Query 025892
Match_columns 246
No_of_seqs 119 out of 1087
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 10:45:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025892.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025892hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03750 proteasome_alpha_type_ 100.0 3.9E-63 8.5E-68 418.2 29.5 226 9-239 1-226 (227)
2 PRK03996 proteasome subunit al 100.0 5.7E-62 1.2E-66 414.6 30.4 238 1-242 1-239 (241)
3 PTZ00246 proteasome subunit al 100.0 8.3E-62 1.8E-66 416.2 30.1 235 7-244 3-243 (253)
4 KOG0176 20S proteasome, regula 100.0 1.9E-62 4.2E-67 387.2 20.4 232 6-242 5-241 (241)
5 KOG0182 20S proteasome, regula 100.0 8.6E-61 1.9E-65 381.5 24.9 246 1-246 1-246 (246)
6 KOG0183 20S proteasome, regula 100.0 4E-61 8.7E-66 384.1 19.3 235 6-244 1-235 (249)
7 cd03754 proteasome_alpha_type_ 100.0 7.8E-60 1.7E-64 394.8 26.4 213 8-220 1-215 (215)
8 TIGR03633 arc_protsome_A prote 100.0 1.3E-59 2.9E-64 396.0 27.3 222 8-234 2-224 (224)
9 cd03751 proteasome_alpha_type_ 100.0 1.9E-59 4.2E-64 391.4 26.4 210 7-220 2-212 (212)
10 cd03752 proteasome_alpha_type_ 100.0 4.9E-59 1.1E-63 389.7 26.8 211 7-220 1-213 (213)
11 cd03755 proteasome_alpha_type_ 100.0 7.1E-59 1.5E-63 387.1 26.1 207 9-220 1-207 (207)
12 COG0638 PRE1 20S proteasome, a 100.0 2.4E-58 5.2E-63 390.1 29.1 232 8-245 2-235 (236)
13 cd03749 proteasome_alpha_type_ 100.0 1.5E-58 3.2E-63 386.2 26.3 209 9-221 1-211 (211)
14 cd03756 proteasome_alpha_arche 100.0 9.7E-58 2.1E-62 381.4 27.1 210 8-221 1-210 (211)
15 KOG0184 20S proteasome, regula 100.0 3.1E-57 6.8E-62 363.5 22.1 235 4-242 3-238 (254)
16 cd01911 proteasome_alpha prote 100.0 1E-56 2.3E-61 374.7 25.6 209 9-220 1-209 (209)
17 cd03753 proteasome_alpha_type_ 100.0 1.4E-56 3.1E-61 374.8 25.6 208 9-220 1-213 (213)
18 KOG0181 20S proteasome, regula 100.0 2.6E-57 5.7E-62 357.3 18.1 229 8-242 5-233 (233)
19 KOG0178 20S proteasome, regula 100.0 1.3E-54 2.9E-59 345.8 22.9 235 8-244 4-242 (249)
20 KOG0863 20S proteasome, regula 100.0 4.4E-52 9.5E-57 335.5 22.4 230 8-242 5-236 (264)
21 TIGR03690 20S_bact_beta protea 100.0 5E-47 1.1E-51 318.3 25.3 204 36-244 2-216 (219)
22 TIGR03691 20S_bact_alpha prote 100.0 2E-46 4.3E-51 315.5 25.9 212 17-239 8-228 (228)
23 cd03760 proteasome_beta_type_4 100.0 1.4E-46 3.1E-51 310.8 23.5 188 35-224 1-191 (197)
24 PTZ00488 Proteasome subunit be 100.0 6.1E-46 1.3E-50 316.0 25.6 204 31-244 35-240 (247)
25 cd03758 proteasome_beta_type_2 100.0 7.9E-46 1.7E-50 305.4 23.8 184 37-224 2-187 (193)
26 cd03759 proteasome_beta_type_3 100.0 1.3E-45 2.9E-50 304.6 23.7 189 36-230 3-194 (195)
27 cd03761 proteasome_beta_type_5 100.0 8.6E-45 1.9E-49 298.1 23.8 185 37-230 1-187 (188)
28 cd03757 proteasome_beta_type_1 100.0 6.8E-45 1.5E-49 304.0 22.9 191 35-229 7-206 (212)
29 TIGR03634 arc_protsome_B prote 100.0 3.2E-44 6.9E-49 294.0 23.3 182 36-224 1-184 (185)
30 cd03764 proteasome_beta_archea 100.0 1.6E-43 3.4E-48 290.6 24.0 186 37-231 1-188 (188)
31 cd03765 proteasome_beta_bacter 100.0 1.5E-43 3.3E-48 298.5 23.1 186 37-225 1-202 (236)
32 cd03762 proteasome_beta_type_6 100.0 3.5E-43 7.5E-48 288.6 23.6 182 37-225 1-184 (188)
33 cd03763 proteasome_beta_type_7 100.0 4.6E-43 1E-47 288.1 23.6 185 37-231 1-187 (189)
34 PF00227 Proteasome: Proteasom 100.0 3.6E-42 7.8E-47 282.4 23.2 186 32-220 1-190 (190)
35 cd01912 proteasome_beta protea 100.0 1.4E-41 3.1E-46 279.0 22.7 182 37-224 1-184 (189)
36 cd01906 proteasome_protease_Hs 100.0 7.9E-41 1.7E-45 272.7 23.6 180 37-220 1-182 (182)
37 KOG0179 20S proteasome, regula 100.0 1.2E-37 2.5E-42 248.6 18.9 196 31-230 24-230 (235)
38 KOG0175 20S proteasome, regula 100.0 1.2E-37 2.6E-42 255.4 16.8 199 35-242 70-270 (285)
39 KOG0177 20S proteasome, regula 100.0 3.7E-37 8.1E-42 242.3 16.5 188 38-231 3-192 (200)
40 KOG0174 20S proteasome, regula 100.0 1E-36 2.2E-41 240.5 14.3 203 31-241 15-219 (224)
41 KOG0173 20S proteasome, regula 100.0 6.2E-35 1.3E-39 238.9 16.4 189 30-227 32-222 (271)
42 KOG0185 20S proteasome, regula 100.0 3E-35 6.6E-40 238.5 14.4 222 12-238 12-243 (256)
43 KOG0180 20S proteasome, regula 100.0 1.3E-32 2.8E-37 213.6 16.7 184 36-225 8-194 (204)
44 PRK05456 ATP-dependent proteas 100.0 9.4E-32 2E-36 216.5 18.4 165 36-219 1-171 (172)
45 cd01913 protease_HslV Protease 100.0 5.5E-31 1.2E-35 210.8 18.6 163 37-219 1-170 (171)
46 TIGR03692 ATP_dep_HslV ATP-dep 100.0 1.8E-30 3.8E-35 207.8 17.4 165 37-219 1-170 (171)
47 cd01901 Ntn_hydrolase The Ntn 100.0 3.5E-29 7.6E-34 198.6 21.4 161 37-203 1-163 (164)
48 PF10584 Proteasome_A_N: Prote 99.5 2.9E-15 6.4E-20 78.7 2.3 23 9-31 1-23 (23)
49 COG5405 HslV ATP-dependent pro 99.5 2.2E-13 4.7E-18 105.6 11.6 169 35-221 3-176 (178)
50 COG3484 Predicted proteasome-t 99.2 4.2E-10 9.1E-15 90.6 11.6 185 37-224 2-202 (255)
51 PF09894 DUF2121: Uncharacteri 96.7 0.037 8E-07 45.0 10.9 152 37-224 2-181 (194)
52 COG4079 Uncharacterized protei 95.3 1.5 3.3E-05 37.1 15.0 171 37-239 2-197 (293)
53 KOG3361 Iron binding protein i 66.2 13 0.00027 28.6 4.3 44 152-197 71-114 (157)
54 PF00178 Ets: Ets-domain; Int 60.0 22 0.00049 25.1 4.5 27 217-243 21-47 (85)
55 smart00413 ETS erythroblast tr 59.3 17 0.00037 25.9 3.7 27 216-242 20-46 (87)
56 smart00481 POLIIIAc DNA polyme 56.4 14 0.00031 24.2 2.9 32 14-46 6-38 (67)
57 COG0279 GmhA Phosphoheptose is 49.5 24 0.00051 28.4 3.5 37 15-51 115-151 (176)
58 PF11211 DUF2997: Protein of u 48.6 39 0.00085 21.1 3.8 33 151-183 2-34 (48)
59 PF07499 RuvA_C: RuvA, C-termi 44.6 15 0.00033 22.6 1.5 34 167-201 12-45 (47)
60 cd06404 PB1_aPKC PB1 domain is 43.6 1.1E+02 0.0023 21.6 5.7 52 186-242 17-68 (83)
61 KOG3806 Predicted transcriptio 42.7 33 0.00071 27.7 3.4 25 217-241 88-112 (177)
62 PRK08868 flagellar protein Fla 39.2 1.8E+02 0.004 22.7 7.0 33 212-244 99-132 (144)
63 PF14804 Jag_N: Jag N-terminus 38.8 37 0.00079 21.6 2.6 29 189-223 5-33 (52)
64 PF06057 VirJ: Bacterial virul 32.7 47 0.001 27.3 2.9 35 107-145 43-77 (192)
65 PF03646 FlaG: FlaG protein; 30.3 1.7E+02 0.0038 21.1 5.5 32 212-243 65-97 (107)
66 PF03928 DUF336: Domain of unk 29.8 63 0.0014 24.4 3.1 36 187-225 1-36 (132)
67 PRK09732 hypothetical protein; 28.2 1.5E+02 0.0033 22.8 5.0 37 186-225 4-40 (134)
68 TIGR02261 benz_CoA_red_D benzo 27.9 52 0.0011 28.4 2.6 57 135-201 97-158 (262)
69 PF02811 PHP: PHP domain; Int 27.7 59 0.0013 25.0 2.7 31 14-45 7-38 (175)
70 PHA01810 hypothetical protein 27.7 71 0.0015 22.0 2.7 38 169-206 12-49 (100)
71 PF08140 Cuticle_1: Crustacean 27.5 87 0.0019 18.8 2.7 29 15-51 5-33 (40)
72 PRK11092 bifunctional (p)ppGpp 26.7 61 0.0013 32.1 3.1 43 9-51 384-433 (702)
73 COG3411 Ferredoxin [Energy pro 26.5 1.3E+02 0.0027 20.1 3.6 24 219-242 21-44 (64)
74 COG1891 Uncharacterized protei 25.7 1.6E+02 0.0035 24.0 4.8 53 189-241 92-175 (235)
75 COG4728 Uncharacterized protei 25.7 76 0.0016 23.3 2.6 31 68-98 9-39 (124)
76 PF05589 DUF768: Protein of un 25.0 74 0.0016 21.2 2.3 41 170-210 4-44 (64)
77 PF04539 Sigma70_r3: Sigma-70 24.6 1.4E+02 0.0031 19.9 3.9 33 91-123 3-35 (78)
78 PF10632 He_PIG_assoc: He_PIG 23.8 1.1E+02 0.0024 16.9 2.5 22 137-159 5-26 (29)
79 TIGR03192 benz_CoA_bzdQ benzoy 23.7 78 0.0017 27.8 2.9 56 133-198 123-183 (293)
80 COG4245 TerY Uncharacterized p 23.0 2E+02 0.0043 23.7 4.9 36 193-229 22-58 (207)
81 TIGR03285 methan_mark_14 putat 22.7 2.4E+02 0.0051 25.8 5.7 59 185-244 56-115 (445)
82 PRK07738 flagellar protein Fla 22.6 3.4E+02 0.0074 20.4 6.8 32 212-243 74-106 (117)
83 PF01380 SIS: SIS domain SIS d 22.5 1.1E+02 0.0023 22.4 3.2 34 12-45 56-89 (131)
84 PF00564 PB1: PB1 domain; Int 22.4 2.5E+02 0.0054 18.8 6.1 51 187-243 20-70 (84)
85 cd06396 PB1_NBR1 The PB1 domai 22.2 2.8E+02 0.0062 19.4 5.7 48 188-243 21-68 (81)
86 KOG2599 Pyridoxal/pyridoxine/p 22.1 5.4E+02 0.012 22.6 8.6 100 103-208 157-263 (308)
87 PRK08452 flagellar protein Fla 21.8 3.6E+02 0.0079 20.4 6.8 31 213-243 82-113 (124)
88 TIGR03544 DivI1A_domain DivIVA 21.7 78 0.0017 18.0 1.7 18 227-244 15-32 (34)
89 PF09887 DUF2114: Uncharacteri 20.9 3.6E+02 0.0079 24.7 6.5 59 185-244 58-118 (448)
90 TIGR02259 benz_CoA_red_A benzo 20.7 87 0.0019 28.9 2.7 57 135-201 267-328 (432)
91 PRK10886 DnaA initiator-associ 20.7 1.4E+02 0.0029 24.5 3.6 34 14-47 114-147 (196)
92 COG0317 SpoT Guanosine polypho 20.2 1.2E+02 0.0025 30.1 3.6 45 8-52 384-435 (701)
93 PF09702 Cas_Csa5: CRISPR-asso 20.2 3.3E+02 0.0072 20.0 5.1 64 177-244 9-87 (105)
No 1
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.9e-63 Score=418.18 Aligned_cols=226 Identities=37% Similarity=0.634 Sum_probs=217.4
Q ss_pred CccccceeCCCCcchhhhhHHHHHhccCceEEEEEcCCeEEEEEeccCCCcccccCCceeeEEecCcEEEEEecchHHHH
Q 025892 9 YDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGNTADAR 88 (246)
Q Consensus 9 yd~~~t~fsp~Gri~Q~eya~~av~~~G~tvigi~~~dgVvlaad~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~ 88 (246)
||+++|+|||||||+|||||.+|+++ |+|+|||+++||||||+|++.+++++.+++.+||++|++|++|+++|+.+|++
T Consensus 1 yd~~~t~fsp~Grl~QveyA~~av~~-G~t~igik~~dgVvlaad~~~~~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~ 79 (227)
T cd03750 1 YSFSLTTFSPSGKLVQIEYALAAVSS-GAPSVGIKAANGVVLATEKKVPSPLIDESSVHKVEQITPHIGMVYSGMGPDFR 79 (227)
T ss_pred CCCCCceECCCCeEhHHHHHHHHHHc-CCCEEEEEeCCEEEEEEeecCCccccCCCCcceEEEEcCCEEEEEeEcHHhHH
Confidence 89999999999999999999999994 99999999999999999999998888888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCceeeeeeEEEe
Q 025892 89 SLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSA 168 (246)
Q Consensus 89 ~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~~~~a~ 168 (246)
.+.+++|.+++.|++.+|++++++.++++|++.+|.|+++++.|||+|++||||||+ .||+||++||+|++.+++++|+
T Consensus 80 ~l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rP~~v~~li~G~D~-~g~~Ly~~d~~G~~~~~~~~a~ 158 (227)
T cd03750 80 VLVKKARKIAQQYYLVYGEPIPVSQLVREIASVMQEYTQSGGVRPFGVSLLIAGWDE-GGPYLYQVDPSGSYFTWKATAI 158 (227)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCCCChheEEEEEEEeC-CCCEEEEECCCCCEEeeeEEEE
Confidence 999999999999999999999999999999999999999999999999999999996 6999999999999999999999
Q ss_pred cCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEeCCceEEEcCHHHHHHHH
Q 025892 169 GLKEQEAINFLEKKMKNDPAFSYEETVQTAVSALQSVLQEDFKATEIEVGVVRSDDRVFRVLSSEEIDEHL 239 (246)
Q Consensus 169 G~g~~~~~~~Le~~~~~~~~~s~~ea~~l~~~al~~~~~~d~~~~~iei~iv~~~~~~~~~l~~~ei~~~~ 239 (246)
|+|++.++++||++| +++||++||++++++||+.+.+|++...+++|++|++++ +++.++|+||++++
T Consensus 159 G~g~~~~~~~Le~~~--~~~ms~eeai~l~~~~l~~~~~~~l~~~~iev~iv~~~~-~~~~~~~~ei~~~~ 226 (227)
T cd03750 159 GKNYSNAKTFLEKRY--NEDLELEDAIHTAILTLKEGFEGQMTEKNIEIGICGETK-GFRLLTPAEIKDYL 226 (227)
T ss_pred CCCCHHHHHHHHhhc--cCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEECCC-CEEECCHHHHHHHh
Confidence 999999999999996 789999999999999999999988877799999999874 49999999999986
No 2
>PRK03996 proteasome subunit alpha; Provisional
Probab=100.00 E-value=5.7e-62 Score=414.62 Aligned_cols=238 Identities=37% Similarity=0.656 Sum_probs=225.8
Q ss_pred CCCC-CCCCCccccceeCCCCcchhhhhHHHHHhccCceEEEEEcCCeEEEEEeccCCCcccccCCceeeEEecCcEEEE
Q 025892 1 MSRG-SGAGYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLL 79 (246)
Q Consensus 1 ~~~~-~~~~yd~~~t~fsp~Gri~Q~eya~~av~~~G~tvigi~~~dgVvlaad~~~~~~l~~~~~~~Ki~~i~~~i~~~ 79 (246)
|-|+ ++.+||+++|+|||||||+|+|||.+|++ +|+|+|||+++||||||+|++.++.++..++.+||++|++|++|+
T Consensus 1 ~~~~~~~~~y~~~~~~fsp~Gr~~Q~eya~~av~-~G~t~igik~~dgVvlaad~r~~~~~~~~~~~~KI~~I~~~i~~~ 79 (241)
T PRK03996 1 MMMQPQQMGYDRAITIFSPDGRLYQVEYAREAVK-RGTTAVGVKTKDGVVLAVDKRITSPLIEPSSIEKIFKIDDHIGAA 79 (241)
T ss_pred CCCCccccccCCCCceECCCCeEhHHHHHHHHHH-hCCCEEEEEeCCEEEEEEeccCCCcccCCCccceEEEEcCCEEEE
Confidence 4454 68999999999999999999999999999 599999999999999999999998888888899999999999999
Q ss_pred EecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCce
Q 025892 80 ATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGH 159 (246)
Q Consensus 80 ~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~ 159 (246)
+||+.+|++.+.++++.+++.|++.++++++++.++++|++.+|.|+++++.|||++++||||||+ .||+||.+||+|+
T Consensus 80 ~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~~~~ilaG~d~-~gp~Ly~id~~G~ 158 (241)
T PRK03996 80 SAGLVADARVLIDRARVEAQINRLTYGEPIGVETLTKKICDHKQQYTQHGGVRPFGVALLIAGVDD-GGPRLFETDPSGA 158 (241)
T ss_pred EcccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCccchheEEEEEEEeC-CcCEEEEECCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999996 7899999999999
Q ss_pred eeeeeEEEecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEeCCceEEEcCHHHHHHHH
Q 025892 160 FFGHKATSAGLKEQEAINFLEKKMKNDPAFSYEETVQTAVSALQSVLQEDFKATEIEVGVVRSDDRVFRVLSSEEIDEHL 239 (246)
Q Consensus 160 ~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~s~~ea~~l~~~al~~~~~~d~~~~~iei~iv~~~~~~~~~l~~~ei~~~~ 239 (246)
+.+++++|+|+|++.++++||+.| +++|+++||++++++||+.+.+++.+.++++|+++++++++|+.++++||++++
T Consensus 159 ~~~~~~~a~G~g~~~~~~~Le~~~--~~~~s~eeai~l~~~al~~~~~~~~~~~~i~i~ii~~~~~~~~~~~~~ei~~~~ 236 (241)
T PRK03996 159 YLEYKATAIGAGRDTVMEFLEKNY--KEDLSLEEAIELALKALAKANEGKLDPENVEIAYIDVETKKFRKLSVEEIEKYL 236 (241)
T ss_pred eecceEEEECCCcHHHHHHHHHhc--ccCCCHHHHHHHHHHHHHHHhccCCCCCcEEEEEEECCCCcEEECCHHHHHHHH
Confidence 999999999999999999999985 789999999999999999998876655689999999998789999999999999
Q ss_pred HHh
Q 025892 240 TAI 242 (246)
Q Consensus 240 ~~i 242 (246)
+++
T Consensus 237 ~~~ 239 (241)
T PRK03996 237 EKL 239 (241)
T ss_pred HHh
Confidence 875
No 3
>PTZ00246 proteasome subunit alpha; Provisional
Probab=100.00 E-value=8.3e-62 Score=416.25 Aligned_cols=235 Identities=35% Similarity=0.551 Sum_probs=220.7
Q ss_pred CCCccccceeCCCCcchhhhhHHHHHhccCceEEEEEcCCeEEEEEeccCCCccccc-CCceeeEEecCcEEEEEecchH
Q 025892 7 AGYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQ-TCVTHLFPITKYLGLLATGNTA 85 (246)
Q Consensus 7 ~~yd~~~t~fsp~Gri~Q~eya~~av~~~G~tvigi~~~dgVvlaad~~~~~~l~~~-~~~~Ki~~i~~~i~~~~sG~~~ 85 (246)
++||+++|+|||||||||+|||++|+++ |+|+|||+++||||||+|++.++.++.. ++.+||++|++|++|+++|+.+
T Consensus 3 ~~yd~~~~~fsp~Grl~QvEYA~~av~~-g~t~Igik~~dgVvlaad~r~s~~~~~~~~~~~KI~~I~~~i~~~~sG~~~ 81 (253)
T PTZ00246 3 RRYDSRTTTFSPEGRLYQVEYALEAINN-ASLTVGILCKEGVILGADKPISSKLLDPGKINEKIYKIDSHIFCAVAGLTA 81 (253)
T ss_pred CccCCCCceECCCCEEhHHHHHHHHHHh-CCCEEEEEECCEEEEEEecCCCCcCccCCCCcccEEEecCCEEEEEEEcHH
Confidence 3799999999999999999999999995 9999999999999999999999666554 4689999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCceeeeeeE
Q 025892 86 DARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKA 165 (246)
Q Consensus 86 D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~~~ 165 (246)
|++.+.+.+|.+++.|++.+++++++..+++.++..+|.|+|+++.|||+|++||||||++.||+||++||+|++.++++
T Consensus 82 D~~~l~~~~r~~~~~~~~~~~~~~~v~~l~~~l~~~~q~~~~~~~~rP~~v~~li~G~D~~~gp~Ly~~D~~Gs~~~~~~ 161 (253)
T PTZ00246 82 DANILINQCRLYAQRYRYTYGEPQPVEQLVVQICDLKQSYTQFGGLRPFGVSFLFAGYDENLGYQLYHTDPSGNYSGWKA 161 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccCCEEEEEEEEeCCCCcEEEEECCCCCEecceE
Confidence 99999999999999999999999999999999999999999999999999999999999767899999999999999999
Q ss_pred EEecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCC-CcEEEEEEEeCC----ceEEEcCHHHHHHHHH
Q 025892 166 TSAGLKEQEAINFLEKKMKNDPAFSYEETVQTAVSALQSVLQEDFKA-TEIEVGVVRSDD----RVFRVLSSEEIDEHLT 240 (246)
Q Consensus 166 ~a~G~g~~~~~~~Le~~~~~~~~~s~~ea~~l~~~al~~~~~~d~~~-~~iei~iv~~~~----~~~~~l~~~ei~~~~~ 240 (246)
+|+|+|+..++++||+.| +++|+++||++++++||+.+..+|..+ .+++|++|++++ +.|+.++++||++++.
T Consensus 162 ~a~G~gs~~~~~~Le~~~--~~~ms~eeai~l~~~al~~~~~~d~~s~~~vev~ii~~~~~~~~~~~~~l~~~ei~~~l~ 239 (253)
T PTZ00246 162 TAIGQNNQTAQSILKQEW--KEDLTLEQGLLLAAKVLTKSMDSTSPKADKIEVGILSHGETDGEPIQKMLSEKEIAELLK 239 (253)
T ss_pred EEECCCcHHHHHHHHHhc--cCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCcCCCCCeEECCHHHHHHHHH
Confidence 999999999999999985 789999999999999999999988765 589999999874 3499999999999999
Q ss_pred Hhhc
Q 025892 241 AISE 244 (246)
Q Consensus 241 ~i~~ 244 (246)
++.+
T Consensus 240 ~~~~ 243 (253)
T PTZ00246 240 KVTQ 243 (253)
T ss_pred HHhh
Confidence 8864
No 4
>KOG0176 consensus 20S proteasome, regulatory subunit alpha type PSMA5/PUP2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-62 Score=387.21 Aligned_cols=232 Identities=33% Similarity=0.596 Sum_probs=220.5
Q ss_pred CCCCccccceeCCCCcchhhhhHHHHHhccCceEEEEEcCCeEEEEEeccCCCcccccCCceeeEEecCcEEEEEecchH
Q 025892 6 GAGYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGNTA 85 (246)
Q Consensus 6 ~~~yd~~~t~fsp~Gri~Q~eya~~av~~~G~tvigi~~~dgVvlaad~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~ 85 (246)
.+.||+.+++|||||||||+|||.+|++ .|+|.|||+.++|||||++||.+++|+.+.+.+||++|++||+|++||+.+
T Consensus 5 rseydrgVNTfSpEGRlfQVEYaieAik-LGsTaIGv~TkEgVvL~vEKritSpLm~p~sveKi~eid~HIgca~SGl~a 83 (241)
T KOG0176|consen 5 RSEYDRGVNTFSPEGRLFQVEYAIEAIK-LGSTAIGVKTKEGVVLAVEKRITSPLMEPSSVEKIVEIDDHIGCAMSGLIA 83 (241)
T ss_pred HHHhcccccccCCCceeeehhhHHHHHh-cCCceeeeeccceEEEEEeccccCcccCchhhhhheehhhceeeecccccc
Confidence 3579999999999999999999999999 599999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhhhhccCC-----CCCccceeEEEEEeCCCCcEEEEEcCCcee
Q 025892 86 DARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAY-----MRPLGVVAMVLGIDEEKGPQLYKCDPAGHF 160 (246)
Q Consensus 86 D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~-----~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~ 160 (246)
|++++++.+|.++++|++.||++|+++.+++.++++..+|..... .|||||++|+||+|+ .||+||..||+|++
T Consensus 84 DarTlve~arv~~qnh~f~Y~e~i~VEs~tq~v~~LaLrFGe~~~~~~~msRPFGValliAG~D~-~gpqL~h~dPSGtf 162 (241)
T KOG0176|consen 84 DARTLVERARVETQNHWFTYGEPISVESLTQAVSDLALRFGEGDDEEAIMSRPFGVALLIAGHDE-TGPQLYHLDPSGTF 162 (241)
T ss_pred chHHHHHHHHHHhhhceeecCCcccHHHHHHHHHHHHhHhCCCcchhhhhcCCcceEEEEeeccC-CCceEEEeCCCCce
Confidence 999999999999999999999999999999999999988865422 499999999999996 89999999999999
Q ss_pred eeeeEEEecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEeCCceEEEcCHHHHHHHHH
Q 025892 161 FGHKATSAGLKEQEAINFLEKKMKNDPAFSYEETVQTAVSALQSVLQEDFKATEIEVGVVRSDDRVFRVLSSEEIDEHLT 240 (246)
Q Consensus 161 ~~~~~~a~G~g~~~~~~~Le~~~~~~~~~s~~ea~~l~~~al~~~~~~d~~~~~iei~iv~~~~~~~~~l~~~ei~~~~~ 240 (246)
.+|++-|||+|+.-+.+.|++.| .++|+++||+.+++..|+.+++..+++.|+++.+|++.+. |+.++|||++.++.
T Consensus 163 ~~~~AKAIGSgsEga~~~L~~e~--~~~ltL~ea~~~~L~iLkqVMeeKl~~~Nvev~~vt~e~~-f~~~t~EE~~~~i~ 239 (241)
T KOG0176|consen 163 IRYKAKAIGSGSEGAESSLQEEY--HKDLTLKEAEKIVLKILKQVMEEKLNSNNVEVAVVTPEGE-FHIYTPEEVEQVIK 239 (241)
T ss_pred EEecceeccccchHHHHHHHHHH--hhcccHHHHHHHHHHHHHHHHHHhcCccceEEEEEcccCc-eEecCHHHHHHHHh
Confidence 99999999999999999999996 6789999999999999999999999999999999999874 99999999999987
Q ss_pred Hh
Q 025892 241 AI 242 (246)
Q Consensus 241 ~i 242 (246)
++
T Consensus 240 ~~ 241 (241)
T KOG0176|consen 240 RL 241 (241)
T ss_pred cC
Confidence 54
No 5
>KOG0182 consensus 20S proteasome, regulatory subunit alpha type PSMA6/SCL1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.6e-61 Score=381.55 Aligned_cols=246 Identities=66% Similarity=1.020 Sum_probs=240.4
Q ss_pred CCCCCCCCCccccceeCCCCcchhhhhHHHHHhccCceEEEEEcCCeEEEEEeccCCCcccccCCceeeEEecCcEEEEE
Q 025892 1 MSRGSGAGYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLA 80 (246)
Q Consensus 1 ~~~~~~~~yd~~~t~fsp~Gri~Q~eya~~av~~~G~tvigi~~~dgVvlaad~~~~~~l~~~~~~~Ki~~i~~~i~~~~ 80 (246)
|++++..+||+++|+|||||||+|||||+||+++.|.|+||++++|++|+++.|+.+.+|++++.+..+|+|+.+++|++
T Consensus 1 ~s~gs~agfDrhitIFspeGrLyQVEYafkAin~~gltsVavrgkDcavvvsqKkvpDKLld~~tvt~~f~itk~ig~v~ 80 (246)
T KOG0182|consen 1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQAGLTSVAVRGKDCAVVVTQKKVPDKLLDSSTVTHLFRITKKIGCVI 80 (246)
T ss_pred CCCCCcCCccceEEEECCCceEEeeehHHHHhhcCCCceEEEcCCceEEEEecccCcccccccccceeEEEeeccceEEE
Confidence 89999999999999999999999999999999988999999999999999999999999999999999999999999999
Q ss_pred ecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCcee
Q 025892 81 TGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHF 160 (246)
Q Consensus 81 sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~ 160 (246)
+|..+|++..+..+|.++.++++.||.+||++.|+++++++.|.|||+..+||+||.+++.|+|++.||.+|.+||.|-+
T Consensus 81 tG~~aDar~~v~rar~eAa~~~yk~Gyemp~DiL~k~~Ad~~QvytQ~a~mRplg~~~~~i~~D~E~gP~vYk~DpAGyy 160 (246)
T KOG0182|consen 81 TGMIADARSQVQRARYEAAEFRYKYGYEMPCDILAKRMADKSQVYTQNAAMRPLGVAATLIGVDEERGPSVYKTDPAGYY 160 (246)
T ss_pred ecCCcchHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHhhHHHHHhhhhhhcccceeEEEEEeccccCcceEeecCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeEEEecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEeCCceEEEcCHHHHHHHHH
Q 025892 161 FGHKATSAGLKEQEAINFLEKKMKNDPAFSYEETVQTAVSALQSVLQEDFKATEIEVGVVRSDDRVFRVLSSEEIDEHLT 240 (246)
Q Consensus 161 ~~~~~~a~G~g~~~~~~~Le~~~~~~~~~s~~ea~~l~~~al~~~~~~d~~~~~iei~iv~~~~~~~~~l~~~ei~~~~~ 240 (246)
..+++++.|-....+..+||++|+++.+++.+|++++++.||..++.-|..+..+||++++.+.+.|+.|+.+||+++|.
T Consensus 161 ~g~kAtaaG~Kq~e~tsfLEKk~Kk~~~~t~~e~ve~ai~al~~sl~~Dfk~se~EVgvv~~~~p~f~~Ls~~eie~hL~ 240 (246)
T KOG0182|consen 161 YGFKATAAGVKQQEATSFLEKKYKKDIDLTFEETVETAISALQSSLGIDFKSSELEVGVVTVDNPEFRILSAEEIEEHLQ 240 (246)
T ss_pred ccceeeecccchhhHHHHHHHhhccCccchHHHHHHHHHHHHHHHHhcccCCcceEEEEEEcCCcceeeccHHHHHHHHH
Confidence 99999999999999999999999777789999999999999999998899888999999999999999999999999999
Q ss_pred HhhccC
Q 025892 241 AISERD 246 (246)
Q Consensus 241 ~i~~~~ 246 (246)
.|.++|
T Consensus 241 ~IAEkd 246 (246)
T KOG0182|consen 241 AIAEKD 246 (246)
T ss_pred HhhhcC
Confidence 999987
No 6
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-61 Score=384.06 Aligned_cols=235 Identities=37% Similarity=0.567 Sum_probs=223.2
Q ss_pred CCCCccccceeCCCCcchhhhhHHHHHhccCceEEEEEcCCeEEEEEeccCCCcccccCCceeeEEecCcEEEEEecchH
Q 025892 6 GAGYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGNTA 85 (246)
Q Consensus 6 ~~~yd~~~t~fsp~Gri~Q~eya~~av~~~G~tvigi~~~dgVvlaad~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~ 85 (246)
+++||+.+|+|||||+|||||||++|+++ |+|+||++++|+|||+.+++...+|.+.+...||..+++|++|+|+|+.+
T Consensus 1 msrydraltvFSPDGhL~QVEYAqEAvrk-GstaVgvrg~~~vvlgvEkkSv~~Lq~~r~~rkI~~ld~hV~mafaGl~a 79 (249)
T KOG0183|consen 1 MSRYDRALTVFSPDGHLFQVEYAQEAVRK-GSTAVGVRGNNCVVLGVEKKSVPKLQDERTVRKISMLDDHVVMAFAGLTA 79 (249)
T ss_pred CCccccceEEECCCCCEEeeHhHHHHHhc-CceEEEeccCceEEEEEeecchhhhhhhhhhhhheeecceeeEEecCCCc
Confidence 35899999999999999999999999995 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCceeeeeeE
Q 025892 86 DARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKA 165 (246)
Q Consensus 86 D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~~~ 165 (246)
|++.+++.+|.+|++|+++.+.+++++.++++|+.+.|+|||..+.||||++++++|||+++.|+||.+||+|.|.+|++
T Consensus 80 DArilinrArvecqShrlt~edpvtveyitRyiA~~kQrYTqs~grRPFGvs~Li~GfD~~g~p~lyqtePsG~f~ewka 159 (249)
T KOG0183|consen 80 DARILINRARVECQSHRLTLEDPVTVEYITRYIAGLKQRYTQSNGRRPFGVSTLIGGFDPDGTPRLYQTEPSGIFSEWKA 159 (249)
T ss_pred cceeehhhHhHhhhhhhcccCCCcHHHHHHHHHHHhhhhhhccCCcccccceEEEEeeCCCCCeeeEeeCCCcchhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999977899999999999999999
Q ss_pred EEecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEeCCceEEEcCHHHHHHHHHHhhc
Q 025892 166 TSAGLKEQEAINFLEKKMKNDPAFSYEETVQTAVSALQSVLQEDFKATEIEVGVVRSDDRVFRVLSSEEIDEHLTAISE 244 (246)
Q Consensus 166 ~a~G~g~~~~~~~Le~~~~~~~~~s~~ea~~l~~~al~~~~~~d~~~~~iei~iv~~~~~~~~~l~~~ei~~~~~~i~~ 244 (246)
.|+|.+++.+..+||++|...+-.+..++++|++++|.++... ...+||++++++.+. ++.|+.++|+.++..|+.
T Consensus 160 ~aiGr~sk~VrEflEK~y~e~~~~~~~~~ikL~ir~LleVvqs--~~~nie~aVm~~~~~-~~~l~~~~I~~~v~~ie~ 235 (249)
T KOG0183|consen 160 NAIGRSSKTVREFLEKNYKEEAIATEGETIKLAIRALLEVVQS--GGKNIEVAVMKRRKD-LKMLESEEIDDIVKEIEQ 235 (249)
T ss_pred cccccccHHHHHHHHHhcccccccccccHHHHHHHHHHHHhhc--CCCeeEEEEEecCCc-eeecCHHHHHHHHHHHHH
Confidence 9999999999999999986556688899999999999998753 345899999999876 999999999999998864
No 7
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=7.8e-60 Score=394.84 Aligned_cols=213 Identities=71% Similarity=1.085 Sum_probs=202.2
Q ss_pred CCccccceeCCCCcchhhhhHHHHHhccCceEEEEEcCCeEEEEEeccCCCcccccCCceeeEEecCcEEEEEecchHHH
Q 025892 8 GYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGNTADA 87 (246)
Q Consensus 8 ~yd~~~t~fsp~Gri~Q~eya~~av~~~G~tvigi~~~dgVvlaad~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~ 87 (246)
+||+++|+|||||||+|+|||.+|+++.|+|+|||+++||||||+|+|.++.++..++.+||++|+++++|++||+.+|+
T Consensus 1 ~yd~~~~~fsp~Grl~Qveya~~a~~~~g~t~igi~~~d~Vvlaad~r~~~~~i~~~~~~Ki~~I~~~i~~~~sG~~~D~ 80 (215)
T cd03754 1 GFDRHITIFSPEGRLYQVEYAFKAVKNAGLTSVAVRGKDCAVVVTQKKVPDKLIDPSTVTHLFRITDEIGCVMTGMIADS 80 (215)
T ss_pred CCCCCCeeECCCCeEeHHHhHHHHHhcCCccEEEEEeCCEEEEEEeccccccccCCcccCceEEEcCCEEEEEEechhhH
Confidence 69999999999999999999999998668899999999999999999998777777788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCceeeeeeEEE
Q 025892 88 RSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATS 167 (246)
Q Consensus 88 ~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~~~~a 167 (246)
+.+.+++|.++..|+++++++|+++.+|+++++++|.|+++++.|||++++|+||||+++||+||++||+|++.+++++|
T Consensus 81 ~~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~q~yt~~~~~RP~~v~~ii~G~D~~~gp~Ly~~Dp~Gs~~~~~~~a 160 (215)
T cd03754 81 RSQVQRARYEAAEFKYKYGYEMPVDVLAKRIADINQVYTQHAYMRPLGVSMILIGIDEELGPQLYKCDPAGYFAGYKATA 160 (215)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhCCCCCcCCeeEEEEEEEeCCCCeEEEEEcCCccEEeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999976799999999999999999999
Q ss_pred ecCChHHHHHHHHhhccCCCCC--CHHHHHHHHHHHHHHhhhccCCCCcEEEEEE
Q 025892 168 AGLKEQEAINFLEKKMKNDPAF--SYEETVQTAVSALQSVLQEDFKATEIEVGVV 220 (246)
Q Consensus 168 ~G~g~~~~~~~Le~~~~~~~~~--s~~ea~~l~~~al~~~~~~d~~~~~iei~iv 220 (246)
+|+|++.++++||++|++..+| |.+||++++++||..+.+||+...++||++|
T Consensus 161 ~G~gs~~~~~~Le~~~~~~~~~~~s~eeai~l~~~al~~~~~rd~~~~~~ei~~~ 215 (215)
T cd03754 161 AGVKEQEATNFLEKKLKKKPDLIESYEETVELAISCLQTVLSTDFKATEIEVGVV 215 (215)
T ss_pred ECCCcHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEC
Confidence 9999999999999997544458 9999999999999999999988779999885
No 8
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=1.3e-59 Score=396.02 Aligned_cols=222 Identities=40% Similarity=0.689 Sum_probs=211.5
Q ss_pred CCccccceeCCCCcchhhhhHHHHHhccCceEEEEEcCCeEEEEEeccCCCcccccCCceeeEEecCcEEEEEecchHHH
Q 025892 8 GYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGNTADA 87 (246)
Q Consensus 8 ~yd~~~t~fsp~Gri~Q~eya~~av~~~G~tvigi~~~dgVvlaad~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~ 87 (246)
+||.++|+|||||||+|+|||.+|+++ |+|+|||+++||||||+|+|.++.++..++.+||++|+++++|++||+.+|+
T Consensus 2 ~~~~~~~~f~p~Grl~Qieya~~av~~-G~tvigi~~~dgvvlaad~r~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~ 80 (224)
T TIGR03633 2 GYDRAITVFSPDGRLYQVEYAREAVKR-GTTAVGIKTKDGVVLAVDKRITSKLVEPSSIEKIFKIDDHIGAATSGLVADA 80 (224)
T ss_pred CCCCCCceECCCCeEeHHHHHHHHHHc-CCCEEEEEECCEEEEEEeccCCccccCCCccceEEEECCCEEEEEeecHHhH
Confidence 799999999999999999999999995 9999999999999999999999888888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCceeeeeeEEE
Q 025892 88 RSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATS 167 (246)
Q Consensus 88 ~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~~~~a 167 (246)
+.+.+.++.++..|+++++++++++.++++|++.+|.|+++++.|||+|++||||+|+ ++|+||.+||.|++.+++++|
T Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~~~~~~rP~~v~~ll~G~d~-~~~~Ly~~D~~G~~~~~~~~a 159 (224)
T TIGR03633 81 RVLIDRARIEAQINRLTYGEPIDVETLAKKICDLKQQYTQHGGVRPFGVALLIAGVDD-GGPRLFETDPSGALLEYKATA 159 (224)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCccccceEEEEEEEeC-CcCEEEEECCCCCeecceEEE
Confidence 9999999999999999999999999999999999999999999999999999999995 789999999999999999999
Q ss_pred ecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCC-CcEEEEEEEeCCceEEEcCHHH
Q 025892 168 AGLKEQEAINFLEKKMKNDPAFSYEETVQTAVSALQSVLQEDFKA-TEIEVGVVRSDDRVFRVLSSEE 234 (246)
Q Consensus 168 ~G~g~~~~~~~Le~~~~~~~~~s~~ea~~l~~~al~~~~~~d~~~-~~iei~iv~~~~~~~~~l~~~e 234 (246)
+|+++..++++|++.| +++|+++||++++++||+.+.+ |+.+ ++++|++|+++++.|+.++++|
T Consensus 160 ~G~g~~~~~~~L~~~~--~~~~~~eeai~l~~~al~~~~~-d~~~~~~i~i~ii~~~g~~~~~~~~~~ 224 (224)
T TIGR03633 160 IGAGRQAVTEFLEKEY--REDLSLDEAIELALKALYSAVE-DKLTPENVEVAYITVEDKKFRKLSVEE 224 (224)
T ss_pred ECCCCHHHHHHHHHhc--cCCCCHHHHHHHHHHHHHHHhc-ccCCCCcEEEEEEEcCCCcEEECCCCC
Confidence 9999999999999985 7899999999999999999887 6544 5899999999887799999875
No 9
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.9e-59 Score=391.44 Aligned_cols=210 Identities=38% Similarity=0.561 Sum_probs=199.9
Q ss_pred CCCccccceeCCCCcchhhhhHHHHHhccCceEEEEEcCCeEEEEEeccCCCcccccCCceeeEEecCcEEEEEecchHH
Q 025892 7 AGYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGNTAD 86 (246)
Q Consensus 7 ~~yd~~~t~fsp~Gri~Q~eya~~av~~~G~tvigi~~~dgVvlaad~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D 86 (246)
++||+++|+|||||||+|+|||.+|+++ |+|+|||+++||||||+|++.++.++..++.+||++|++|++|+++|+.+|
T Consensus 2 ~~yd~~~t~fsp~Grl~Qveya~~a~~~-G~tvIgik~kdgVvla~d~r~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D 80 (212)
T cd03751 2 TGYDLSASTFSPDGRVFQVEYANKAVEN-SGTAIGIRCKDGVVLAVEKLVTSKLYEPGSNKRIFNVDRHIGIAVAGLLAD 80 (212)
T ss_pred CCccCCCceECCCCcchHHHHHHHHHhc-CCCEEEEEeCCEEEEEEEccccccccCcchhcceeEecCcEEEEEEEChHh
Confidence 6899999999999999999999999995 999999999999999999999888887788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCceeeeeeEE
Q 025892 87 ARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKAT 166 (246)
Q Consensus 87 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~~~~ 166 (246)
++.+.+++|.+++.|++.++++++++.++++|++.+|.|++++++|||+|++||||||+ +||+||++||+|++.+++++
T Consensus 81 ~~~l~~~~r~~~~~y~~~~~~~~~v~~la~~ls~~~~~~t~~~~~rP~~vs~li~G~D~-~gp~Ly~~D~~Gs~~~~~~~ 159 (212)
T cd03751 81 GRHLVSRAREEAENYRDNYGTPIPVKVLADRVAMYMHAYTLYSSVRPFGCSVLLGGYDS-DGPQLYMIEPSGVSYGYFGC 159 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccCCCcCCceEEEEEEEEeC-CcCEEEEECCCCCEEeeEEE
Confidence 99999999999999999999999999999999999999999999999999999999996 68999999999999999999
Q ss_pred EecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhc-cCCCCcEEEEEE
Q 025892 167 SAGLKEQEAINFLEKKMKNDPAFSYEETVQTAVSALQSVLQE-DFKATEIEVGVV 220 (246)
Q Consensus 167 a~G~g~~~~~~~Le~~~~~~~~~s~~ea~~l~~~al~~~~~~-d~~~~~iei~iv 220 (246)
|+|+|+..++++||+.| +++||++||+++++++|+.+.+. +....+|||+++
T Consensus 160 a~G~g~~~a~~~Lek~~--~~dms~eeai~l~~~~L~~~~~~~~~~~~~iei~~~ 212 (212)
T cd03751 160 AIGKGKQAAKTELEKLK--FSELTCREAVKEAAKIIYIVHDEIKDKAFELELSWV 212 (212)
T ss_pred EECCCCHHHHHHHHHhc--cCCCCHHHHHHHHHHHHHHHhhccCCCCccEEEEEC
Confidence 99999999999999995 78999999999999999999974 356678999874
No 10
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.9e-59 Score=389.72 Aligned_cols=211 Identities=36% Similarity=0.559 Sum_probs=199.7
Q ss_pred CCCccccceeCCCCcchhhhhHHHHHhccCceEEEEEcCCeEEEEEeccCCCccccc-CCceeeEEecCcEEEEEecchH
Q 025892 7 AGYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQ-TCVTHLFPITKYLGLLATGNTA 85 (246)
Q Consensus 7 ~~yd~~~t~fsp~Gri~Q~eya~~av~~~G~tvigi~~~dgVvlaad~~~~~~l~~~-~~~~Ki~~i~~~i~~~~sG~~~ 85 (246)
.+||+++|+|||||||+|+|||.||+++ |+|+|||+++||||||+|++.+++++.. ++.+||++|++|++|++||+.+
T Consensus 1 ~~yd~~~~~fsp~Grl~Qveya~~a~~~-G~t~igi~~~dgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~ 79 (213)
T cd03752 1 RRYDSRTTIFSPEGRLYQVEYAMEAISH-AGTCLGILAKDGIVLAAEKKVTSKLLDQSFSSEKIYKIDDHIACAVAGITS 79 (213)
T ss_pred CCcCCCCceECCCCEEhHHHhHHHHHhc-CCCEEEEEeCCEEEEEEEeccCCcccCCCcCcceEEEecCCEEEEEecChH
Confidence 4799999999999999999999999995 9999999999999999999999666654 4889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCceeeeeeE
Q 025892 86 DARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKA 165 (246)
Q Consensus 86 D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~~~ 165 (246)
|++.+.+++|.+++.|+++++++|+++.+++.|+..+|.||+.++.|||+|++||||||++.||+||.+||+|++.++++
T Consensus 80 D~~~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~~~~t~~~~~RP~~v~~li~G~D~~~g~~ly~~d~~G~~~~~~~ 159 (213)
T cd03752 80 DANILINYARLIAQRYLYSYQEPIPVEQLVQRLCDIKQGYTQYGGLRPFGVSFLYAGWDKHYGFQLYQSDPSGNYSGWKA 159 (213)
T ss_pred hHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCcccceeEEEEEEEeCCCCCEEEEECCCCCeeeeeE
Confidence 99999999999999999999999999999999999999999999999999999999999767999999999999999999
Q ss_pred EEecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCC-CcEEEEEE
Q 025892 166 TSAGLKEQEAINFLEKKMKNDPAFSYEETVQTAVSALQSVLQEDFKA-TEIEVGVV 220 (246)
Q Consensus 166 ~a~G~g~~~~~~~Le~~~~~~~~~s~~ea~~l~~~al~~~~~~d~~~-~~iei~iv 220 (246)
+|+|+++..++++||++| +++||++||++++++||..+.+|+... .+++|++|
T Consensus 160 ~a~G~gs~~~~~~Le~~y--~~~ms~eea~~l~~~al~~~~~r~~~~~~~~ei~~~ 213 (213)
T cd03752 160 TAIGNNNQAAQSLLKQDY--KDDMTLEEALALAVKVLSKTMDSTKLTSEKLEFATL 213 (213)
T ss_pred EEECCCcHHHHHHHHHhc--cCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEC
Confidence 999999999999999996 789999999999999999999988554 58999875
No 11
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=7.1e-59 Score=387.12 Aligned_cols=207 Identities=38% Similarity=0.618 Sum_probs=197.7
Q ss_pred CccccceeCCCCcchhhhhHHHHHhccCceEEEEEcCCeEEEEEeccCCCcccccCCceeeEEecCcEEEEEecchHHHH
Q 025892 9 YDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGNTADAR 88 (246)
Q Consensus 9 yd~~~t~fsp~Gri~Q~eya~~av~~~G~tvigi~~~dgVvlaad~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~ 88 (246)
||+++|+|||||||+|+|||.+|+++ |+|+|||+++||||||+|++.++.++.+++.+||++|++|++|++||+.+|++
T Consensus 1 ~d~~~~~fsp~Gr~~Qveya~~av~~-G~t~Igik~~dgVvlaad~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~ 79 (207)
T cd03755 1 YDRAITVFSPDGHLFQVEYAQEAVRK-GTTAVGVRGKDCVVLGVEKKSVAKLQDPRTVRKICMLDDHVCLAFAGLTADAR 79 (207)
T ss_pred CCCCCceECCCCeEeHHHHHHHHHHc-CCCEEEEEeCCEEEEEEecCCCCcccCCCccCcEEEECCCEEEEEecchhhHH
Confidence 89999999999999999999999995 99999999999999999999887788778899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCceeeeeeEEEe
Q 025892 89 SLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSA 168 (246)
Q Consensus 89 ~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~~~~a~ 168 (246)
.+.+++|.+++.|+++++++|+++.++++|++.+|+|+++++.|||+|++||||||++++|+||.+||+|++.+++++|+
T Consensus 80 ~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~y~~~~~~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~a~ 159 (207)
T cd03755 80 VLINRARLECQSHRLTVEDPVTVEYITRYIAGLQQRYTQSGGVRPFGISTLIVGFDPDGTPRLYQTDPSGTYSAWKANAI 159 (207)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCcccceeEEEEEEEeCCCCeEEEEECCCcCEEcceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999767999999999999999999999
Q ss_pred cCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEE
Q 025892 169 GLKEQEAINFLEKKMKNDPAFSYEETVQTAVSALQSVLQEDFKATEIEVGVV 220 (246)
Q Consensus 169 G~g~~~~~~~Le~~~~~~~~~s~~ea~~l~~~al~~~~~~d~~~~~iei~iv 220 (246)
|+|+..++++||++| +++|+.+||++++++||..+.+ .+..++||+++
T Consensus 160 G~gs~~~~~~Le~~~--~~~ms~eeai~l~~~~l~~~~~--~~~~~~e~~~~ 207 (207)
T cd03755 160 GRNSKTVREFLEKNY--KEEMTRDDTIKLAIKALLEVVQ--SGSKNIELAVM 207 (207)
T ss_pred CCCCHHHHHHHHhhc--cCCCCHHHHHHHHHHHHHHHhC--CCCCeEEEEEC
Confidence 999999999999995 7899999999999999999986 45568999875
No 12
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-58 Score=390.11 Aligned_cols=232 Identities=43% Similarity=0.700 Sum_probs=218.5
Q ss_pred CCccccceeCCCCcchhhhhHHHHHhccCceEEEEEcCCeEEEEEeccCCCc-ccccCCceeeEEecCcEEEEEecchHH
Q 025892 8 GYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDK-LLDQTCVTHLFPITKYLGLLATGNTAD 86 (246)
Q Consensus 8 ~yd~~~t~fsp~Gri~Q~eya~~av~~~G~tvigi~~~dgVvlaad~~~~~~-l~~~~~~~Ki~~i~~~i~~~~sG~~~D 86 (246)
+||+.+++||||||++|+|||.+++++.|+|+|||+++||||||+|+|.+++ ++..++.+|||+|+||++|++||+.+|
T Consensus 2 ~~~~~~~~fsp~g~l~q~e~a~~a~~~~gtT~vgik~~dgVVlaadkr~t~~~~~~~~~~~Ki~~I~d~i~~~~sG~~aD 81 (236)
T COG0638 2 GYDRAITIFSPEGRLFQVEYALEAVKRGGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDDHIGMAIAGLAAD 81 (236)
T ss_pred CCcCcceeECCCCchHHHHHHHHHHHcCCceEEEEEecCEEEEEEeccCCCCceecccccceEEEecCCEEEEeccCcHh
Confidence 7999999999999999999999999976699999999999999999999955 555667999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCceeeeeeEE
Q 025892 87 ARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKAT 166 (246)
Q Consensus 87 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~~~~ 166 (246)
++.|+++++.+++.|++.++++|+++.+++.+++++|.|+++ .|||+|++||||+|+ ++|+||++||+|++.++++.
T Consensus 82 a~~lv~~~r~~a~~~~~~~~~~i~v~~la~~ls~~l~~~~~~--~rP~gv~~iiaG~d~-~~p~Ly~~Dp~G~~~~~~~~ 158 (236)
T COG0638 82 AQVLVRYARAEAQLYRLRYGEPISVEALAKLLSNILQEYTQS--GRPYGVSLLVAGVDD-GGPRLYSTDPSGSYNEYKAT 158 (236)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccC--cccceEEEEEEEEcC-CCCeEEEECCCCceeecCEE
Confidence 999999999999999999999999999999999999999887 799999999999998 89999999999999999999
Q ss_pred EecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCC-CcEEEEEEEeCCceEEEcCHHHHHHHHHHhhcc
Q 025892 167 SAGLKEQEAINFLEKKMKNDPAFSYEETVQTAVSALQSVLQEDFKA-TEIEVGVVRSDDRVFRVLSSEEIDEHLTAISER 245 (246)
Q Consensus 167 a~G~g~~~~~~~Le~~~~~~~~~s~~ea~~l~~~al~~~~~~d~~~-~~iei~iv~~~~~~~~~l~~~ei~~~~~~i~~~ 245 (246)
|+|+|++.++++||+.| +++|+.|||++++++||+.+.+||..+ ++++|+++++++ +++.+++++++.++..+..+
T Consensus 159 a~Gsgs~~a~~~Le~~y--~~~m~~eeai~la~~al~~a~~rd~~s~~~~~v~vi~~~~-~~~~~~~~~~~~~~~~~~~~ 235 (236)
T COG0638 159 AIGSGSQFAYGFLEKEY--REDLSLEEAIELAVKALRAAIERDAASGGGIEVAVITKDE-GFRKLDGEEIKKLLDDLSEK 235 (236)
T ss_pred EEcCCcHHHHHHHHhhc--cCCCCHHHHHHHHHHHHHHHHhccccCCCCeEEEEEEcCC-CeEEcCHHHHHHHHHHHhhc
Confidence 99999999999999996 788999999999999999999999854 588999999974 49999999999999887654
No 13
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.5e-58 Score=386.20 Aligned_cols=209 Identities=35% Similarity=0.609 Sum_probs=197.7
Q ss_pred CccccceeCCCCcchhhhhHHHHHhccCceEEEEEcCCeEEEEEeccCCCcccccCCceeeEEecCcEEEEEecchHHHH
Q 025892 9 YDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGNTADAR 88 (246)
Q Consensus 9 yd~~~t~fsp~Gri~Q~eya~~av~~~G~tvigi~~~dgVvlaad~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~ 88 (246)
||+++|+|||||||||+|||++|+++ |+|+|||+++||||||+|+|.++.+. ++.+||++|++|++|++||+.+|++
T Consensus 1 yd~~~t~fsp~Grl~Qveya~~av~~-G~t~IgIk~~dgVvlaad~r~~~~l~--~~~~KI~~I~~~i~~~~sG~~~D~~ 77 (211)
T cd03749 1 YDTDVTTWSPQGRLFQVEYAMEAVKQ-GSATVGLKSKTHAVLVALKRATSELS--SYQKKIFKVDDHIGIAIAGLTADAR 77 (211)
T ss_pred CCCCCceECCCCeEeHHHHHHHHHhc-CCCEEEEEeCCEEEEEEeccCccccC--CccccEEEeCCCEEEEEEeChHhHH
Confidence 89999999999999999999999995 99999999999999999999876653 4669999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCceeeeeeEEEe
Q 025892 89 SLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSA 168 (246)
Q Consensus 89 ~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~~~~a~ 168 (246)
.+.+++|.+++.|+++++++|+++.+++.+++.+|.||++.+.|||+|++||||||+ .||+||++||+|++.+++++|+
T Consensus 78 ~l~~~~r~~~~~~~~~~~~~~~v~~la~~is~~~~~~t~~~~~rP~~v~~ii~G~D~-~gp~Ly~~Dp~G~~~~~~~~a~ 156 (211)
T cd03749 78 VLSRYMRQECLNYRFVYDSPIPVSRLVSKVAEKAQINTQRYGRRPYGVGLLIAGYDE-SGPHLFQTCPSGNYFEYKATSI 156 (211)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEEcC-CCCeEEEECCCcCEeeeeEEEE
Confidence 999999999999999999999999999999999999999999999999999999996 6899999999999999999999
Q ss_pred cCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhcc--CCCCcEEEEEEE
Q 025892 169 GLKEQEAINFLEKKMKNDPAFSYEETVQTAVSALQSVLQED--FKATEIEVGVVR 221 (246)
Q Consensus 169 G~g~~~~~~~Le~~~~~~~~~s~~ea~~l~~~al~~~~~~d--~~~~~iei~iv~ 221 (246)
|+|++.++++||++|+++++|+++||+++++++|+.+.++| .+..+|||++|+
T Consensus 157 G~g~~~a~~~Le~~~~~~~~ms~ee~i~~~~~~l~~~~~~~~~~~~~~iei~ii~ 211 (211)
T cd03749 157 GARSQSARTYLERHFEEFEDCSLEELIKHALRALRETLPGEQELTIKNVSIAIVG 211 (211)
T ss_pred CCCcHHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHhccCCCCCCCcEEEEEEC
Confidence 99999999999999865589999999999999999999887 555699999984
No 14
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=9.7e-58 Score=381.40 Aligned_cols=210 Identities=39% Similarity=0.674 Sum_probs=201.9
Q ss_pred CCccccceeCCCCcchhhhhHHHHHhccCceEEEEEcCCeEEEEEeccCCCcccccCCceeeEEecCcEEEEEecchHHH
Q 025892 8 GYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGNTADA 87 (246)
Q Consensus 8 ~yd~~~t~fsp~Gri~Q~eya~~av~~~G~tvigi~~~dgVvlaad~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~ 87 (246)
+||+++|+|||||||+|+|||.||+++ |+|+|||+++||||||+|++.++.++..++.+||++|+++++|++||+.+|+
T Consensus 1 ~y~~~~~~fsp~G~l~Q~eya~~av~~-G~t~igik~~dgvvla~d~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~ 79 (211)
T cd03756 1 GYDRAITVFSPDGRLYQVEYAREAVKR-GTTALGIKCKEGVVLAVDKRITSKLVEPESIEKIYKIDDHVGAATSGLVADA 79 (211)
T ss_pred CCCCCCceECCCCeEhHHHHHHHHHHc-CCCEEEEEECCEEEEEEeccCCCcccCCCccceEEEEcCCEEEEEecCHHHH
Confidence 699999999999999999999999995 9999999999999999999999888888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCceeeeeeEEE
Q 025892 88 RSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATS 167 (246)
Q Consensus 88 ~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~~~~a 167 (246)
+.+.+.++.+++.|+++++++++++.+++.|++.+|.|+++++.|||++++||||||+ .+|+||.+||+|++.+++++|
T Consensus 80 ~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~ll~G~D~-~~~~ly~vd~~G~~~~~~~~a 158 (211)
T cd03756 80 RVLIDRARVEAQIHRLTYGEPIDVEVLVKKICDLKQQYTQHGGVRPFGVALLIAGVDD-GGPRLFETDPSGAYNEYKATA 158 (211)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCeechhEEEEEEEEeC-CCCEEEEECCCCCeeeeEEEE
Confidence 9999999999999999999999999999999999999999999999999999999996 799999999999999999999
Q ss_pred ecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEE
Q 025892 168 AGLKEQEAINFLEKKMKNDPAFSYEETVQTAVSALQSVLQEDFKATEIEVGVVR 221 (246)
Q Consensus 168 ~G~g~~~~~~~Le~~~~~~~~~s~~ea~~l~~~al~~~~~~d~~~~~iei~iv~ 221 (246)
+|++++.++++||++| +|+|+++||++++++||+.+.+++....+++|++|+
T Consensus 159 ~G~g~~~~~~~Le~~~--~~~m~~~ea~~l~~~~l~~~~~~~~~~~~~~v~ii~ 210 (211)
T cd03756 159 IGSGRQAVTEFLEKEY--KEDMSLEEAIELALKALYAALEENETPENVEIAYVT 210 (211)
T ss_pred ECCCCHHHHHHHHhhc--cCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEe
Confidence 9999999999999995 789999999999999999999888866699999986
No 15
>KOG0184 consensus 20S proteasome, regulatory subunit alpha type PSMA3/PRE10 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-57 Score=363.48 Aligned_cols=235 Identities=33% Similarity=0.521 Sum_probs=216.7
Q ss_pred CCCCCCccccceeCCCCcchhhhhHHHHHhccCceEEEEEcCCeEEEEEeccCCCcccccCCceeeEEecCcEEEEEecc
Q 025892 4 GSGAGYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGN 83 (246)
Q Consensus 4 ~~~~~yd~~~t~fsp~Gri~Q~eya~~av~~~G~tvigi~~~dgVvlaad~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~ 83 (246)
|++++||.+.++||||||+||+|||+||+.| |+|+|||||+||||++++|..+++|..+...+||+.|++||+|+++|+
T Consensus 3 sIGtGyDls~s~fSpdGrvfQveYA~KAven-~~T~IGIk~kdGVVl~vEKli~SkLy~p~sn~ri~~V~r~iG~avaGl 81 (254)
T KOG0184|consen 3 SIGTGYDLSASTFSPDGRVFQVEYAQKAVEN-SGTCIGIKCKDGVVLAVEKLITSKLYEPGSNERIFSVDRHIGMAVAGL 81 (254)
T ss_pred cccccccccceeeCCCCceehHHHHHHHHhc-CCcEEEEecCCeEEEEEeeeecccccccCCCCceEeecccccEEEecc
Confidence 4599999999999999999999999999996 889999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCceeeee
Q 025892 84 TADARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGH 163 (246)
Q Consensus 84 ~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~ 163 (246)
.+|.+.+.+.+|.++.+|+.+|+.++|.+.++..+++++|.||..+..||||++.++++||. +||+||.++|+|..+.+
T Consensus 82 ~~Dg~~l~~~ar~ea~~~~~~y~~piP~~~la~rva~yvh~~Tly~~vRpfG~~~~~~~yd~-~g~~LymiepSG~~~~Y 160 (254)
T KOG0184|consen 82 IPDGRHLVNRARDEAASWRKNYGDPIPGKHLADRVADYVHAFTLYSSVRPFGASTILGSYDD-EGPQLYMIEPSGSSYGY 160 (254)
T ss_pred ccchHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHhhhheeehhhccccccceEEEEEEeC-CCceEEEEcCCCCccce
Confidence 99999999999999999999999999999999999999999999999999999999999995 89999999999999999
Q ss_pred eEEEecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccC-CCCcEEEEEEEeCCceEEEcCHHHHHHHHHHh
Q 025892 164 KATSAGLKEQEAINFLEKKMKNDPAFSYEETVQTAVSALQSVLQEDF-KATEIEVGVVRSDDRVFRVLSSEEIDEHLTAI 242 (246)
Q Consensus 164 ~~~a~G~g~~~~~~~Le~~~~~~~~~s~~ea~~l~~~al~~~~~~d~-~~~~iei~iv~~~~~~~~~l~~~ei~~~~~~i 242 (246)
+++|+|.|.+.|...||++ ...+|+.+|+++.+.+.|..+.+..- ....|||.|+.....+.+...|+||-+..++.
T Consensus 161 ~~aaiGKgrq~aKtElEKL--~~~~mt~~e~VkeaakIiY~~HDe~KdK~feiEm~wvg~eTnG~h~~vp~el~~ea~~~ 238 (254)
T KOG0184|consen 161 KGAAIGKGRQAAKTELEKL--KIDEMTCKELVKEAAKIIYKVHDENKDKEFEIEMGWVGEETNGLHEKVPSELLEEAEKY 238 (254)
T ss_pred eeeeccchhHHHHHHHHhc--ccccccHHHHHHHHHheeEeecccccCcceEEEEEEEEeecCCccccCcHHHHHHHHHH
Confidence 9999999999999999998 45689999999999999998876532 23379999999775557777777876665543
No 16
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=100.00 E-value=1e-56 Score=374.66 Aligned_cols=209 Identities=52% Similarity=0.827 Sum_probs=199.6
Q ss_pred CccccceeCCCCcchhhhhHHHHHhccCceEEEEEcCCeEEEEEeccCCCcccccCCceeeEEecCcEEEEEecchHHHH
Q 025892 9 YDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGNTADAR 88 (246)
Q Consensus 9 yd~~~t~fsp~Gri~Q~eya~~av~~~G~tvigi~~~dgVvlaad~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~ 88 (246)
||+++|+|||||||+|+|||+++++ +|+|+|||+++||||||+|++.++.++..++.+||++|++|++|+++|+.+|++
T Consensus 1 ~~~~~~~f~~~G~~~q~eya~~~~~-~G~tvigi~~~dgVvlaaD~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~ 79 (209)
T cd01911 1 YDRSITTFSPEGRLFQVEYALEAVK-NGSTAVGIKGKDGVVLAVEKKVTSKLLDPSSVEKIFKIDDHIGCAVAGLTADAR 79 (209)
T ss_pred CCCCCccCCCCCEEeHHHHHHHHHH-cCCCEEEEEECCEEEEEEEecCCccccCCcccceEEEecCCeEEEeccCcHhHH
Confidence 8999999999999999999999998 499999999999999999999997777778899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCceeeeeeEEEe
Q 025892 89 SLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSA 168 (246)
Q Consensus 89 ~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~~~~a~ 168 (246)
.+.+.++.++..|+++++++|+++.+|++|++.+|.|+++++.|||+|++||||||++.||+||.+||.|++.+++++++
T Consensus 80 ~l~~~l~~~~~~~~~~~g~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~iv~G~d~~~~~~Ly~iD~~G~~~~~~~~a~ 159 (209)
T cd01911 80 VLVNRARVEAQNYRYTYGEPIPVEVLVKRIADLAQVYTQYGGVRPFGVSLLIAGYDEEGGPQLYQTDPSGTYFGYKATAI 159 (209)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccChhheEEEEEEcCCCCcEEEEECCCCCeeeeeEEEe
Confidence 99999999999999999999999999999999999999999999999999999999866999999999999999999999
Q ss_pred cCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEE
Q 025892 169 GLKEQEAINFLEKKMKNDPAFSYEETVQTAVSALQSVLQEDFKATEIEVGVV 220 (246)
Q Consensus 169 G~g~~~~~~~Le~~~~~~~~~s~~ea~~l~~~al~~~~~~d~~~~~iei~iv 220 (246)
|+|+..++++||+.| +|+|+.+||++++++||+.+.+||+...+++|+++
T Consensus 160 G~g~~~~~~~L~~~~--~~~ms~~ea~~l~~~~l~~~~~~d~~~~~~~i~i~ 209 (209)
T cd01911 160 GKGSQEAKTFLEKRY--KKDLTLEEAIKLALKALKEVLEEDKKAKNIEIAVV 209 (209)
T ss_pred CCCcHHHHHHHHHhc--ccCCCHHHHHHHHHHHHHHHHhccCCCCcEEEEEC
Confidence 999999999999995 78999999999999999999999994458999874
No 17
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.4e-56 Score=374.83 Aligned_cols=208 Identities=36% Similarity=0.632 Sum_probs=197.1
Q ss_pred CccccceeCCCCcchhhhhHHHHHhccCceEEEEEcCCeEEEEEeccCCCcccccCCceeeEEecCcEEEEEecchHHHH
Q 025892 9 YDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGNTADAR 88 (246)
Q Consensus 9 yd~~~t~fsp~Gri~Q~eya~~av~~~G~tvigi~~~dgVvlaad~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~ 88 (246)
||+++|+|||||||+|+|||++++++ |+|+|||+++||||||+|++.++.++..++.+||++|++|++|++||+.+|++
T Consensus 1 ~~~~~~~f~p~G~~~Q~eya~~a~~~-G~t~igik~~dgVvlaad~r~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~ 79 (213)
T cd03753 1 YDRGVNTFSPEGRLFQVEYAIEAIKL-GSTAIGIKTKEGVVLAVEKRITSPLMEPSSVEKIMEIDDHIGCAMSGLIADAR 79 (213)
T ss_pred CCCCCccCCCCCeEhHHHHHHHHHhc-CCCEEEEEeCCEEEEEEecccCCcCcCCCccceEEEEcCCEEEEEecCHHHHH
Confidence 89999999999999999999999995 99999999999999999999987777778899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhhhhcc-----CCCCCccceeEEEEEeCCCCcEEEEEcCCceeeee
Q 025892 89 SLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQH-----AYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGH 163 (246)
Q Consensus 89 ~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~-----~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~ 163 (246)
.+.+.++.+++.|++.++++++++.++++|++.+|.|+++ .+.|||+|++||||||+ +||+||.+||+|++.++
T Consensus 80 ~l~~~~r~~~~~~~~~~~~~i~~~~~~~~ls~~~~~~~~~~~~~~~~~rP~~v~~ii~G~D~-~gp~Ly~vd~~G~~~~~ 158 (213)
T cd03753 80 TLIDHARVEAQNHRFTYNEPMTVESVTQAVSDLALQFGEGDDGKKAMSRPFGVALLIAGVDE-NGPQLFHTDPSGTFTRC 158 (213)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhCcccccccccccceEEEEEEEEcC-CCCEEEEECCCCCeecc
Confidence 9999999999999999999999999999999999999874 34699999999999996 78999999999999999
Q ss_pred eEEEecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEE
Q 025892 164 KATSAGLKEQEAINFLEKKMKNDPAFSYEETVQTAVSALQSVLQEDFKATEIEVGVV 220 (246)
Q Consensus 164 ~~~a~G~g~~~~~~~Le~~~~~~~~~s~~ea~~l~~~al~~~~~~d~~~~~iei~iv 220 (246)
+++|+|++++.++++|+++| +++|+++||++++++||+.+.+++.+..++||++|
T Consensus 159 ~~~a~G~~~~~~~~~L~~~~--~~~ls~eeai~l~~~~l~~~~~~~~~~~~~ei~~~ 213 (213)
T cd03753 159 DAKAIGSGSEGAQSSLQEKY--HKDMTLEEAEKLALSILKQVMEEKLNSTNVELATV 213 (213)
T ss_pred cEEEECCCcHHHHHHHHhhc--cCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEC
Confidence 99999999999999999985 78999999999999999999887877789999875
No 18
>KOG0181 consensus 20S proteasome, regulatory subunit alpha type PSMA2/PRE8 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-57 Score=357.35 Aligned_cols=229 Identities=36% Similarity=0.608 Sum_probs=221.6
Q ss_pred CCccccceeCCCCcchhhhhHHHHHhccCceEEEEEcCCeEEEEEeccCCCcccccCCceeeEEecCcEEEEEecchHHH
Q 025892 8 GYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGNTADA 87 (246)
Q Consensus 8 ~yd~~~t~fsp~Gri~Q~eya~~av~~~G~tvigi~~~dgVvlaad~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~ 87 (246)
+|.+++|+|||+|+|-|+|||+.|+.+ |.+.|||+..||||||++++..+.|.+.++++|++.|.++|+|.+||+.+|+
T Consensus 5 ~y~fslTtFSpsGKL~QieyAL~Av~~-G~~SvGi~A~nGvVlatekk~~s~L~~~~sv~KV~~i~~~IG~vYSGmgpD~ 83 (233)
T KOG0181|consen 5 GYSFSLTTFSPSGKLVQIEYALTAVVN-GQTSVGIKAANGVVLATEKKDVSPLVDEESVRKVEKITPHIGCVYSGMGPDY 83 (233)
T ss_pred ccceeeEEEcCCCceehHHHHHHHHhC-CCCceeeeecCceEEEeccCCCCccchhhhhhhHhhccCCcceEEecCCCce
Confidence 799999999999999999999999995 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCceeeeeeEEE
Q 025892 88 RSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATS 167 (246)
Q Consensus 88 ~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~~~~a 167 (246)
+.+++..|+.++.|...|+++||+..|.+.++..+|+|||+++.||||+++++||||+ ++|.||++||+|++..|+++|
T Consensus 84 RvlV~~~rkiAe~Yy~vY~e~~pt~qlv~~~asvmQEyTqsgGvrPFGvslliaG~~~-~~p~LyQvdPSGsyf~wkatA 162 (233)
T KOG0181|consen 84 RVLVHKSRKIAEQYYRVYGEPIPTTQLVQEVASVMQEYTQSGGVRPFGVSLLIAGWDE-GGPLLYQVDPSGSYFAWKATA 162 (233)
T ss_pred eehhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEeecCC-CceeEEEECCccceeehhhhh
Confidence 9999999999999999999999999999999999999999999999999999999997 799999999999999999999
Q ss_pred ecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEeCCceEEEcCHHHHHHHHHHh
Q 025892 168 AGLKEQEAINFLEKKMKNDPAFSYEETVQTAVSALQSVLQEDFKATEIEVGVVRSDDRVFRVLSSEEIDEHLTAI 242 (246)
Q Consensus 168 ~G~g~~~~~~~Le~~~~~~~~~s~~ea~~l~~~al~~~~~~d~~~~~iei~iv~~~~~~~~~l~~~ei~~~~~~i 242 (246)
.|.+...++.+||++| +++|.+++++..|+.+|++..+....+++|||+++..++ |++|++.||+++++.+
T Consensus 163 ~Gkn~v~aktFlEkR~--~edleldd~ihtailtlkE~fege~~~~nieigv~~~~~--F~~lt~~eI~d~l~~l 233 (233)
T KOG0181|consen 163 MGKNYVNAKTFLEKRY--NEDLELDDAIHTAILTLKESFEGEMTAKNIEIGVCGENG--FRRLTPAEIEDYLASL 233 (233)
T ss_pred hccCcchHHHHHHHHh--ccccccchHHHHHHHHHHHHhccccccCceEEEEecCCc--eeecCHHHHHHHHhcC
Confidence 9999999999999995 789999999999999999999989999999999999664 9999999999998764
No 19
>KOG0178 consensus 20S proteasome, regulatory subunit alpha type PSMA4/PRE9 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-54 Score=345.79 Aligned_cols=235 Identities=35% Similarity=0.566 Sum_probs=218.8
Q ss_pred CCccccceeCCCCcchhhhhHHHHHhccCceEEEEEcCCeEEEEEeccCCCccccc-CCceeeEEecCcEEEEEecchHH
Q 025892 8 GYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQ-TCVTHLFPITKYLGLLATGNTAD 86 (246)
Q Consensus 8 ~yd~~~t~fsp~Gri~Q~eya~~av~~~G~tvigi~~~dgVvlaad~~~~~~l~~~-~~~~Ki~~i~~~i~~~~sG~~~D 86 (246)
+||...|+||||||++|||||++++.+.| |+|||.++||||||++++.+++|++. ...+||++|+||++|+.+|+++|
T Consensus 4 ~ydsrttiFspEGRLyQVEyAmeais~aG-t~iGila~DGvvLa~e~k~t~kll~t~~~~EKiY~l~d~iaC~vaGlt~D 82 (249)
T KOG0178|consen 4 RYDSRTTIFSPEGRLYQVEYAMEAISHAG-TCIGILASDGVVLAGENKVTSKLLDTSIPMEKIYKLNDNIACAVAGLTSD 82 (249)
T ss_pred CcCCcccccCCCcchHHHHHHHHHHhhhc-ceeEEEecCceEEEeecccchhhhhccccHHHhhhcCCceEEEEeccccc
Confidence 79999999999999999999999999755 99999999999999999999998865 46799999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCceeeeeeEE
Q 025892 87 ARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKAT 166 (246)
Q Consensus 87 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~~~~ 166 (246)
+..|++++|..++.|.++||++||++.|.+.|+++.|.|||..+.||||||++-+|||...|.+||+.||+|++..|++.
T Consensus 83 AnvL~n~aRi~AQ~yl~~y~e~iP~eqLv~~lcdiKQayTQygG~RPFGVSfLYaGwd~~~gyqLy~SdPSGny~gWka~ 162 (249)
T KOG0178|consen 83 ANVLKNYARIIAQRYLFRYGEEIPCEQLVTFLCDIKQAYTQYGGKRPFGVSFLYAGWDDRYGYQLYQSDPSGNYGGWKAT 162 (249)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHhhccCcCCCceeeeeeceecCcceEEEecCCCCCcccccee
Confidence 99999999999999999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred EecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhcc-CCCCcEEEEEEEeCCc--eEEEcCHHHHHHHHHHhh
Q 025892 167 SAGLKEQEAINFLEKKMKNDPAFSYEETVQTAVSALQSVLQED-FKATEIEVGVVRSDDR--VFRVLSSEEIDEHLTAIS 243 (246)
Q Consensus 167 a~G~g~~~~~~~Le~~~~~~~~~s~~ea~~l~~~al~~~~~~d-~~~~~iei~iv~~~~~--~~~~l~~~ei~~~~~~i~ 243 (246)
|+|.++..++..|..-|+ ...++.+||+++|++.|....+.. +.+..+||+.++++.. .++.+.++||.++++++.
T Consensus 163 ciG~N~~Aa~s~Lkqdyk-dd~~~~~eA~~laikvL~kt~d~~~lt~eklEia~~~k~~~k~v~~i~~~~ev~kll~k~~ 241 (249)
T KOG0178|consen 163 CIGANSGAAQSMLKQDYK-DDENDLEEAKALAIKVLSKTLDSGSLTAEKLEIATITKDCNKTVLKILKKDEVLKLLEKYH 241 (249)
T ss_pred eeccchHHHHHHHHhhhc-cccccHHHHHHHHHHHHHhhcccCCCChhheEEEEEEecCCceEEEecCHHHHHHHHHHhh
Confidence 999999999999999874 445679999999999999998775 4567899999998754 278899999999999875
Q ss_pred c
Q 025892 244 E 244 (246)
Q Consensus 244 ~ 244 (246)
+
T Consensus 242 ~ 242 (249)
T KOG0178|consen 242 E 242 (249)
T ss_pred h
Confidence 3
No 20
>KOG0863 consensus 20S proteasome, regulatory subunit alpha type PSMA1/PRE5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-52 Score=335.45 Aligned_cols=230 Identities=33% Similarity=0.552 Sum_probs=217.7
Q ss_pred CCccccceeCCCCcchhhhhHHHHHhccCceEEEEEcCCeEEEEEeccCCCcccccCCceeeEEecCcEEEEEecchHHH
Q 025892 8 GYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGNTADA 87 (246)
Q Consensus 8 ~yd~~~t~fsp~Gri~Q~eya~~av~~~G~tvigi~~~dgVvlaad~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~ 87 (246)
-||...|+|||+|||||+|||++|++. |+++||+|.++..||++-++..+.|. ..++||++|++|++++++|+++|+
T Consensus 5 qyd~d~t~wsPqGrl~QvEya~Eavkq-GsatVGLks~thaVLvAl~r~~seLs--s~QkKi~~iD~h~g~siAGLt~Da 81 (264)
T KOG0863|consen 5 QYDNDVTTWSPQGRLHQVEYAMEAVKQ-GSATVGLKSRTHAVLVALKRAQSELS--SHQKKIFKIDDHIGISIAGLTADA 81 (264)
T ss_pred cccCceeEECCcceehHHHHHHHHHhc-ccceEeecccceEEEeeeccchhHHH--HhhheeEecccccceEEeccCcch
Confidence 599999999999999999999999995 99999999999999999999887764 567999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCceeeeeeEEE
Q 025892 88 RSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATS 167 (246)
Q Consensus 88 ~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~~~~a 167 (246)
+.|.++++.+|..+++.+++++|+.-+...|++.+|..||+.++|||||.++++|||+ .|||||.++|+|++.+++..+
T Consensus 82 rvl~~Ylr~ec~~~~~~~~r~~pv~rl~~~l~~k~q~~Tq~ygrRpYGVGllv~gYDe-~G~hl~e~~Psg~v~e~~g~s 160 (264)
T KOG0863|consen 82 RVLSRYLRQECLNSRFIYGRPLPVLRLVEDLGDKAQENTQRYGRRPYGVGLLVAGYDE-SGPHLYEFCPSGNVFECKGMS 160 (264)
T ss_pred HHHHHHHHHHHhhhhhccCCcccHHHHHHHHHHHHhhhhhhhCCccccceEEEEeecC-CCceeEEEcCCccEEEEeeee
Confidence 9999999999999999999999999999999999999999999999999999999997 899999999999999999999
Q ss_pred ecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhcc--CCCCcEEEEEEEeCCceEEEcCHHHHHHHHHHh
Q 025892 168 AGLKEQEAINFLEKKMKNDPAFSYEETVQTAVSALQSVLQED--FKATEIEVGVVRSDDRVFRVLSSEEIDEHLTAI 242 (246)
Q Consensus 168 ~G~g~~~~~~~Le~~~~~~~~~s~~ea~~l~~~al~~~~~~d--~~~~~iei~iv~~~~~~~~~l~~~ei~~~~~~i 242 (246)
||+.++.++++||++....++++.||.+..++.||+.....| +...+++|+||.++.+ |..++.+++.+++.-.
T Consensus 161 IGsRSQsARTyLEr~~e~f~~~~~eELI~~gi~Alr~tlp~de~lt~~nvsI~Ivgkd~p-f~~~d~~~~~k~~~~~ 236 (264)
T KOG0863|consen 161 IGSRSQSARTYLERNLEEFEDSSPEELIKHGIMALRETLPEDEDLTGENVSIAIVGKDEP-FTILDQKDVAKYVDLF 236 (264)
T ss_pred cccchhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCcccccccceeEEEEEeCCCc-eEeecHHHHHHHHHHh
Confidence 999999999999999877889999999999999999999854 5556999999999998 9999999999887643
No 21
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=100.00 E-value=5e-47 Score=318.26 Aligned_cols=204 Identities=21% Similarity=0.263 Sum_probs=189.0
Q ss_pred CceEEEEEcCCeEEEEEeccCC-CcccccCCceeeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Q 025892 36 AITSIGVRGKDSVCVVTQKKVP-DKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVL 114 (246)
Q Consensus 36 G~tvigi~~~dgVvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 114 (246)
|+|+|||+++||||||+|++.+ +.++.+++.+|||+|++|++|+++|+.+|++.+.+++|.+++.|+++++++|+++.+
T Consensus 2 G~T~igi~~kdgVvlaad~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~l 81 (219)
T TIGR03690 2 GTTIVALTYPGGVLMAGDRRATQGNMIASRDVEKVYPTDEYSAVGIAGTAGLAIELVRLFQVELEHYEKIEGVPLTLDGK 81 (219)
T ss_pred CcEEEEEEECCEEEEEECCccccCcEEEcCCcceEEEcCCcEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 8999999999999999999999 588888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhccCCCCCccceeEEEEEeCC-CCcEEEEEcCCc-eeeeeeEEEecCChHHHHHHHHhhccCCCCCCHH
Q 025892 115 SRWIADKSQVYTQHAYMRPLGVVAMVLGIDEE-KGPQLYKCDPAG-HFFGHKATSAGLKEQEAINFLEKKMKNDPAFSYE 192 (246)
Q Consensus 115 a~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~-~gp~Ly~id~~G-~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~s~~ 192 (246)
+++|++++|.++ ...+|||++++||||||+. ++|+||++||+| ++..++++|+|+|++.++++||++| +++||.+
T Consensus 82 a~~ls~~~~~~~-~~~~rp~~v~~iiaG~D~~~~~~~Ly~~Dp~G~~~~~~~~~a~G~g~~~a~~~Le~~~--~~~ms~e 158 (219)
T TIGR03690 82 ANRLAAMVRGNL-PAAMQGLAVVPLLAGYDLDAGAGRIFSYDVTGGRYEERGYHAVGSGSVFAKGALKKLY--SPDLDED 158 (219)
T ss_pred HHHHHHHHHhhh-hhccCCceEEEEEEEECCCCCCcEEEEEeCCCCeeecCCeEEEeccHHHHHHHHHhcC--CCCcCHH
Confidence 999999998876 4558999999999999964 579999999999 5777899999999999999999985 7899999
Q ss_pred HHHHHHHHHHHHhhhccCCCC---c-----EEEEEEEeCCceEEEcCHHHHHHHHHHhhc
Q 025892 193 ETVQTAVSALQSVLQEDFKAT---E-----IEVGVVRSDDRVFRVLSSEEIDEHLTAISE 244 (246)
Q Consensus 193 ea~~l~~~al~~~~~~d~~~~---~-----iei~iv~~~~~~~~~l~~~ei~~~~~~i~~ 244 (246)
||++++.+||..+.+||..++ . ++|++|++++ |++++++||+++++.+.+
T Consensus 159 eai~l~~~al~~~~~~d~~s~~~~~~~~~~~ei~ii~~~g--~~~l~~~ei~~~~~~~~~ 216 (219)
T TIGR03690 159 DALRVAVEALYDAADDDSATGGPDLVRGIYPTVVVITADG--ARRVPESELEELARAIVE 216 (219)
T ss_pred HHHHHHHHHHHHHHhcccccCCcccccccccEEEEEccCc--eEEcCHHHHHHHHHHHHh
Confidence 999999999999999997554 2 3999998664 999999999999998875
No 22
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=100.00 E-value=2e-46 Score=315.47 Aligned_cols=212 Identities=18% Similarity=0.242 Sum_probs=187.2
Q ss_pred CCCCcch-hhhhHHHHHhccCceEEEEEcCCeEEEEEeccCCCcccccCCceeeEEecCcEEEEEecchHHHHHHHHHHH
Q 025892 17 SPEGRLF-QVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQAR 95 (246)
Q Consensus 17 sp~Gri~-Q~eya~~av~~~G~tvigi~~~dgVvlaad~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~ 95 (246)
+|+--+- -.|||++|+++ |+|+|||+++||||||+|++. ++.+|||+|++|++|+++|+.+|++.+++.++
T Consensus 8 ~~~~~~~~~~EYA~kav~~-g~T~VGIk~kdgVVLaaek~~-------~~~~KI~~I~d~ig~~~sG~~~D~~~lv~~~r 79 (228)
T TIGR03691 8 SPEQIMRDRAELARKGIAR-GRSVVVLTYADGILFVAENPS-------RSLHKISELYDRIGFAAVGKYNEFENLRRAGI 79 (228)
T ss_pred CHHHHHhhHHHHHHHHHHc-CCcEEEEEeCCeEEEEEecCC-------CCcCcEEEecCCEEEEEcCCHHHHHHHHHHHH
Confidence 4443343 35899999995 999999999999999999973 46789999999999999999999999999999
Q ss_pred HHHHHHHHHcC-CCCCHHHHHHHHHHHhhhhhccCCCCCccceeEEEEEeC-CCCcEEEEEcCCceeeeee-EEEecCCh
Q 025892 96 NEAAEYRFKFG-YEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDE-EKGPQLYKCDPAGHFFGHK-ATSAGLKE 172 (246)
Q Consensus 96 ~~~~~~~~~~~-~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~-~~gp~Ly~id~~G~~~~~~-~~a~G~g~ 172 (246)
.+++.|++.++ .+++++.+|+++++.+..++ +++.|||+|++|+||||+ +.||+||++||+|++.+++ ++|+|+++
T Consensus 80 ~~a~~~~~~~~~~~~~v~~la~~~tq~~~~~~-~~~~RP~gvs~Li~G~d~~~~gp~Ly~vDpsG~~~~~~~~~aiG~gs 158 (228)
T TIGR03691 80 RYADMRGYSYDRRDVTGRGLANAYAQTLGTIF-TEQQKPYEVEICVAEVGETPDQDQLYRITFDGSIVDERGFVVMGGTT 158 (228)
T ss_pred HHHHHHhhhcCCCCccHHHHHHHHHhhccccc-ccccCcceEEEEEEEEcCCCCCCEEEEECCCCCceeccceEEECCCh
Confidence 99999999998 68999999998888887665 567899999999999985 4789999999999999976 89999999
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhh--cc-CCCCcEEEEEEEeCC--ceEEEcCHHHHHHHH
Q 025892 173 QEAINFLEKKMKNDPAFSYEETVQTAVSALQSVLQ--ED-FKATEIEVGVVRSDD--RVFRVLSSEEIDEHL 239 (246)
Q Consensus 173 ~~~~~~Le~~~~~~~~~s~~ea~~l~~~al~~~~~--~d-~~~~~iei~iv~~~~--~~~~~l~~~ei~~~~ 239 (246)
+.++++||++| +++||++||++++++||..+.+ |+ .+..++||++|++++ +.|++|+++||++++
T Consensus 159 ~~a~~~Lek~y--~~~ms~eeai~la~~aL~~~~~~~r~~~~~~~iEv~ii~k~~~~~~f~~l~~~ei~~~l 228 (228)
T TIGR03691 159 EPIATALKESY--RDGLSLADALGLAVQALRAGGNGEKRELDAASLEVAVLDRSRPRRAFRRITGEALERLL 228 (228)
T ss_pred HHHHHHHHHhc--CCCCCHHHHHHHHHHHHHHHhccccccCCccceEEEEEeCCCCccceEECCHHHHHhhC
Confidence 99999999996 7899999999999999999964 43 556699999999653 459999999999864
No 23
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.4e-46 Score=310.85 Aligned_cols=188 Identities=19% Similarity=0.260 Sum_probs=175.5
Q ss_pred cCceEEEEEcCCeEEEEEeccCC-CcccccCCceeeEEecCcEEEEEecchHHHHHHHHHHHHHHH-HHHHHcCCCCCHH
Q 025892 35 TAITSIGVRGKDSVCVVTQKKVP-DKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAA-EYRFKFGYEMPVD 112 (246)
Q Consensus 35 ~G~tvigi~~~dgVvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~-~~~~~~~~~~~~~ 112 (246)
+|+|+|||+++||||||+|+|.+ +.++.+++.+|||+|++|++|+++|+.+|++.+.+++|.+++ .|++.++++|+++
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 80 (197)
T cd03760 1 TGTSVIAIKYKDGVIIAADTLGSYGSLARFKNVERIFKVGDNTLLGASGDYADFQYLKRLLDQLVIDDECLDDGHSLSPK 80 (197)
T ss_pred CCceEEEEEeCCcEEEEEcCcccccceeecCCCCcEEEecCcEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence 48999999999999999999999 899988899999999999999999999999999999999987 4678899999999
Q ss_pred HHHHHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCceeeeeeEEEecCChHHHHHHHHhhccCCCCCCHH
Q 025892 113 VLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFSYE 192 (246)
Q Consensus 113 ~la~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~s~~ 192 (246)
.++++|++.+ |++++++|||+|++||||||+++||+||++||+|++.+++++|+|+|+.+++++||+.|+..++||++
T Consensus 81 ~la~~i~~~~--y~~~~~~rP~~v~~iiaG~D~~~gp~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~ms~e 158 (197)
T cd03760 81 EIHSYLTRVL--YNRRSKMNPLWNTLVVGGVDNEGEPFLGYVDLLGTAYEDPHVATGFGAYLALPLLREAWEKKPDLTEE 158 (197)
T ss_pred HHHHHHHHHH--HHHhhcCCCceEEEEEEEEcCCCCEEEEEEcCCccEEECCEeEEccHHHHHHHHHHhhcCCCCCCCHH
Confidence 9999999986 88888899999999999999757899999999999999999999999999999999997322399999
Q ss_pred HHHHHHHHHHHHhhhccCCC-CcEEEEEEEeCC
Q 025892 193 ETVQTAVSALQSVLQEDFKA-TEIEVGVVRSDD 224 (246)
Q Consensus 193 ea~~l~~~al~~~~~~d~~~-~~iei~iv~~~~ 224 (246)
||++++++||+.+.+||..+ ++++|++|++++
T Consensus 159 ea~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g 191 (197)
T cd03760 159 EARALIEECMKVLYYRDARSINKYQIAVVTKEG 191 (197)
T ss_pred HHHHHHHHHHHHHHHhccccCCceEEEEECCCC
Confidence 99999999999999999765 589999999986
No 24
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=100.00 E-value=6.1e-46 Score=316.01 Aligned_cols=204 Identities=17% Similarity=0.198 Sum_probs=187.5
Q ss_pred HHhccCceEEEEEcCCeEEEEEeccCC-CcccccCCceeeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCC
Q 025892 31 AVKATAITSIGVRGKDSVCVVTQKKVP-DKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEM 109 (246)
Q Consensus 31 av~~~G~tvigi~~~dgVvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~ 109 (246)
.++ +|+|+|||+++||||||+|+|.+ +.++.+++.+||++|++|++|+++|+.+|++.+.+++|.+++.|+++++++|
T Consensus 35 ~~~-~G~T~IgIk~kdgVvlAaD~r~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~g~~i 113 (247)
T PTZ00488 35 EFA-HGTTTLAFKYGGGIIIAVDSKATAGPYIASQSVKKVIEINPTLLGTMAGGAADCSFWERELAMQCRLYELRNGELI 113 (247)
T ss_pred ccC-CCceEEEEEeCCEEEEEEecCcccCCEEEcCCcCceEEcCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 456 59999999999999999999998 7888889999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCceeeeeeEEEecCChHHHHHHHHhhccCCCCC
Q 025892 110 PVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAF 189 (246)
Q Consensus 110 ~~~~la~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~ 189 (246)
+++.+|++|++++|.+ +..|+.+++||||||+ .||+||++||+|++.+++++|+|+|+..++++||+.| +++|
T Consensus 114 sv~~la~~ls~~l~~~----R~~~~~v~~iiaG~D~-~gp~Ly~vDp~Gs~~~~~~~a~G~gs~~~~~~Le~~~--k~dm 186 (247)
T PTZ00488 114 SVAAASKILANIVWNY----KGMGLSMGTMICGWDK-KGPGLFYVDNDGTRLHGNMFSCGSGSTYAYGVLDAGF--KWDL 186 (247)
T ss_pred CHHHHHHHHHHHHHhc----CCCCeeEEEEEEEEeC-CCCEEEEEcCCcceeecCCEEEccCHHHHHHHHHhcC--cCCC
Confidence 9999999999999764 2224445589999996 7899999999999999999999999999999999995 7799
Q ss_pred CHHHHHHHHHHHHHHhhhccCCC-CcEEEEEEEeCCceEEEcCHHHHHHHHHHhhc
Q 025892 190 SYEETVQTAVSALQSVLQEDFKA-TEIEVGVVRSDDRVFRVLSSEEIDEHLTAISE 244 (246)
Q Consensus 190 s~~ea~~l~~~al~~~~~~d~~~-~~iei~iv~~~~~~~~~l~~~ei~~~~~~i~~ 244 (246)
|.+||++++++||+.+.+||..+ ++++|++|++++ ++.++++||+++++.+.+
T Consensus 187 s~eEai~l~~kal~~~~~Rd~~sg~~~ei~iI~k~g--~~~l~~~ei~~~l~~~~~ 240 (247)
T PTZ00488 187 NDEEAQDLGRRAIYHATFRDAYSGGAINLYHMQKDG--WKKISADDCFDLHQKYAA 240 (247)
T ss_pred CHHHHHHHHHHHHHHHHHhccccCCCeEEEEEcCCc--cEECCHHHHHHHHHHHhh
Confidence 99999999999999999999765 589999999775 999999999999998764
No 25
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=7.9e-46 Score=305.43 Aligned_cols=184 Identities=18% Similarity=0.304 Sum_probs=174.2
Q ss_pred ceEEEEEcCCeEEEEEeccCC-CcccccCCceeeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q 025892 37 ITSIGVRGKDSVCVVTQKKVP-DKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLS 115 (246)
Q Consensus 37 ~tvigi~~~dgVvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 115 (246)
+|+|||+++||||||+|+|.+ +.++.+++.+|||+|++|++|++||+.+|++.|.++++.+++.|+++++++++++.++
T Consensus 2 ~t~igi~~~dgVvlaad~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la 81 (193)
T cd03758 2 ETLIGIKGKDFVILAADTSAARSILVLKDDEDKIYKLSDHKLMACSGEAGDRLQFAEYIQKNIQLYKMRNGYELSPKAAA 81 (193)
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEecCcccEEEeCCCeEEEEccchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 599999999999999999998 6778888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCceeeeeeEEEecCChHHHHHHHHhhccCCCCCCHHHHH
Q 025892 116 RWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFSYEETV 195 (246)
Q Consensus 116 ~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~s~~ea~ 195 (246)
++|++.+|.|++.. |||++++||||||++.||+||++||+|++.+++++|+|+|+++++++||+.| +++||.+||+
T Consensus 82 ~~l~~~~~~~~~~~--rP~~~~~li~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~--~~~ms~eeai 157 (193)
T cd03758 82 NFTRRELAESLRSR--TPYQVNLLLAGYDKVEGPSLYYIDYLGTLVKVPYAAHGYGAYFCLSILDRYY--KPDMTVEEAL 157 (193)
T ss_pred HHHHHHHHHHhhcC--CCeEEEEEEEEEcCCCCcEEEEECCCcceEECCeeEEeecHHHHHHHHHhcc--CCCCCHHHHH
Confidence 99999999886543 8999999999999767899999999999999999999999999999999996 6899999999
Q ss_pred HHHHHHHHHhhhccCCCC-cEEEEEEEeCC
Q 025892 196 QTAVSALQSVLQEDFKAT-EIEVGVVRSDD 224 (246)
Q Consensus 196 ~l~~~al~~~~~~d~~~~-~iei~iv~~~~ 224 (246)
+++++||+.+.+||+.++ +++|++|++++
T Consensus 158 ~l~~~a~~~~~~rd~~~~~~i~i~ii~~~g 187 (193)
T cd03758 158 ELMKKCIKELKKRFIINLPNFTVKVVDKDG 187 (193)
T ss_pred HHHHHHHHHHHHhccccCCceEEEEEcCCC
Confidence 999999999999998765 89999999886
No 26
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.3e-45 Score=304.57 Aligned_cols=189 Identities=21% Similarity=0.248 Sum_probs=173.8
Q ss_pred CceEEEEEcCCeEEEEEeccCCCcccc-cCCceeeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Q 025892 36 AITSIGVRGKDSVCVVTQKKVPDKLLD-QTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVL 114 (246)
Q Consensus 36 G~tvigi~~~dgVvlaad~~~~~~l~~-~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 114 (246)
|+|+|||+++||||||+|++.++.++. .++.+|||+|++|++|++||+.+|++.+.+.+|.+++.|+++++++|+++.+
T Consensus 3 G~t~igik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~l 82 (195)
T cd03759 3 GGAVVAMAGKDCVAIASDLRLGVQQQTVSTDFQKVFRIGDRLYIGLAGLATDVQTLAQKLRFRVNLYRLREEREIKPKTF 82 (195)
T ss_pred CceEEEEEcCCEEEEEEccccccCCEeEecCCCeEEEeCCCEEEEccchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 899999999999999999999876655 5578999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCceeeeee-EEEecCChHHHHHHHHhhccCCCCCCHHH
Q 025892 115 SRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHK-ATSAGLKEQEAINFLEKKMKNDPAFSYEE 193 (246)
Q Consensus 115 a~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~~-~~a~G~g~~~~~~~Le~~~~~~~~~s~~e 193 (246)
+++|++.+ |+++ .+||+|++||||||++++|+||++||+|++.+++ ++|+|+|++.++++||+.| +|+||.+|
T Consensus 83 a~~l~~~l--y~~r--~~P~~v~~ii~G~D~~~~p~Ly~~D~~G~~~~~~~~~a~G~g~~~~~~~Le~~~--~~~~s~~e 156 (195)
T cd03759 83 SSLISSLL--YEKR--FGPYFVEPVVAGLDPDGKPFICTMDLIGCPSIPSDFVVSGTASEQLYGMCESLW--RPDMEPDE 156 (195)
T ss_pred HHHHHHHH--HHhc--CCCceEEEEEEEEcCCCCEEEEEEcCCCcccccCCEEEEcccHHHHHHHHHhcc--CCCCCHHH
Confidence 99999998 5553 5799999999999976789999999999998887 9999999999999999995 78999999
Q ss_pred HHHHHHHHHHHhhhccCCCC-cEEEEEEEeCCceEEEc
Q 025892 194 TVQTAVSALQSVLQEDFKAT-EIEVGVVRSDDRVFRVL 230 (246)
Q Consensus 194 a~~l~~~al~~~~~~d~~~~-~iei~iv~~~~~~~~~l 230 (246)
|++++++||+.+.+||+.++ +++|++|++++...+.|
T Consensus 157 a~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g~~~~~~ 194 (195)
T cd03759 157 LFETISQALLSAVDRDALSGWGAVVYIITKDKVTTRTL 194 (195)
T ss_pred HHHHHHHHHHHHHhhCcccCCceEEEEEcCCcEEEEec
Confidence 99999999999999997664 89999999988655544
No 27
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=8.6e-45 Score=298.12 Aligned_cols=185 Identities=21% Similarity=0.258 Sum_probs=173.4
Q ss_pred ceEEEEEcCCeEEEEEeccCCC-cccccCCceeeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q 025892 37 ITSIGVRGKDSVCVVTQKKVPD-KLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLS 115 (246)
Q Consensus 37 ~tvigi~~~dgVvlaad~~~~~-~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 115 (246)
+|+|||+++||||||+|++.++ .++.+++.+|||+|++|++|+++|+.+|++.|.+++|.+++.|++.++++|+++.++
T Consensus 1 tT~igi~~kdgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i~~~~la 80 (188)
T cd03761 1 TTTLAFIFQGGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCQYWERVLGRECRLYELRNKERISVAAAS 80 (188)
T ss_pred CcEEEEEECCEEEEEEcCCccCCcEEEcCCcceEEEccCcEEEEeCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 5899999999999999999995 777788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCceeeeeeEEEecCChHHHHHHHHhhccCCCCCCHHHHH
Q 025892 116 RWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFSYEETV 195 (246)
Q Consensus 116 ~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~s~~ea~ 195 (246)
++|++++|.|+ ..||++++||||||+ .||+||++||+|++.+++++|+|+|+++++++||+.| +++||.+||+
T Consensus 81 ~~ls~~l~~~~----~~~~~v~~li~G~D~-~g~~L~~~dp~G~~~~~~~~a~G~g~~~~~~~Le~~~--~~~~s~eea~ 153 (188)
T cd03761 81 KLLSNMLYQYK----GMGLSMGTMICGWDK-TGPGLYYVDSDGTRLKGDLFSVGSGSTYAYGVLDSGY--RYDLSVEEAY 153 (188)
T ss_pred HHHHHHHHhcC----CCCeEEEEEEEEEeC-CCCEEEEEcCCceEEEcCeEEEcccHHHHHHHHHhcC--CCCCCHHHHH
Confidence 99999998874 358999999999996 7999999999999999999999999999999999995 7899999999
Q ss_pred HHHHHHHHHhhhccCCCC-cEEEEEEEeCCceEEEc
Q 025892 196 QTAVSALQSVLQEDFKAT-EIEVGVVRSDDRVFRVL 230 (246)
Q Consensus 196 ~l~~~al~~~~~~d~~~~-~iei~iv~~~~~~~~~l 230 (246)
+++++||+.+.+||..++ +++|++|++++ ++++
T Consensus 154 ~l~~~~l~~~~~rd~~sg~~~~v~ii~~~g--~~~~ 187 (188)
T cd03761 154 DLARRAIYHATHRDAYSGGNVNLYHVREDG--WRKI 187 (188)
T ss_pred HHHHHHHHHHHHhcccCCCCeEEEEEcCCc--eEEc
Confidence 999999999999997765 89999999886 5544
No 28
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=6.8e-45 Score=303.98 Aligned_cols=191 Identities=19% Similarity=0.314 Sum_probs=174.9
Q ss_pred cCceEEEEEcCCeEEEEEeccCCCcc-cccCCceeeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHH
Q 025892 35 TAITSIGVRGKDSVCVVTQKKVPDKL-LDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDV 113 (246)
Q Consensus 35 ~G~tvigi~~~dgVvlaad~~~~~~l-~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 113 (246)
.|+|+|||+++||||||+|++.+..+ +..++.+||++|++|++|++||+.+|++.+.+.++.+++.|+++++++++++.
T Consensus 7 ~G~Tvigik~~dgVvlaaD~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~i~~~~ 86 (212)
T cd03757 7 NGGTVLAIAGNDFAVIAGDTRLSEGYSILSRDSPKIFKLTDKCVLGSSGFQADILALTKRLKARIKMYKYSHNKEMSTEA 86 (212)
T ss_pred CCccEEEEEcCCEEEEEECCccccCCEeEeCCCCeEEEcCCCEEEEccchHHHHHHHHHHHHHHHHHHhHHhCCCCCHHH
Confidence 59999999999999999999999554 55778999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCceeeeeeEEEecCChHHHHHHHHhhcc-------CC
Q 025892 114 LSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMK-------ND 186 (246)
Q Consensus 114 la~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~-------~~ 186 (246)
++++|++.+ |++ +.|||++++||||||++++|+||++||+|++.+++++|+|+|+.+++++||+.|+ |+
T Consensus 87 la~~ls~~l--y~~--R~~P~~~~~iiaG~D~~~~p~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~ 162 (212)
T cd03757 87 IAQLLSTIL--YSR--RFFPYYVFNILAGIDEEGKGVVYSYDPVGSYERETYSAGGSASSLIQPLLDNQVGRKNQNNVER 162 (212)
T ss_pred HHHHHHHHH--Hhh--cCCCeEEEEEEEEEcCCCCEEEEEEcCccCeeecCEEEEeecHHHHHHHHHHHHHhhccCcCCC
Confidence 999999999 443 3579999999999997667999999999999999999999999999999999974 34
Q ss_pred CCCCHHHHHHHHHHHHHHhhhccCCCC-cEEEEEEEeCCceEEE
Q 025892 187 PAFSYEETVQTAVSALQSVLQEDFKAT-EIEVGVVRSDDRVFRV 229 (246)
Q Consensus 187 ~~~s~~ea~~l~~~al~~~~~~d~~~~-~iei~iv~~~~~~~~~ 229 (246)
++||++||++++.+||+.+.+||+.++ +++|++|+++|...+.
T Consensus 163 ~~ms~eea~~l~~~~l~~~~~rd~~sg~~i~i~iit~~g~~~~~ 206 (212)
T cd03757 163 TPLSLEEAVSLVKDAFTSAAERDIYTGDSLEIVIITKDGIEEET 206 (212)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCcccCCCEEEEEEcCCCEEEEe
Confidence 899999999999999999999997664 8999999999854443
No 29
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=3.2e-44 Score=293.99 Aligned_cols=182 Identities=29% Similarity=0.482 Sum_probs=173.2
Q ss_pred CceEEEEEcCCeEEEEEeccCC-CcccccCCceeeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Q 025892 36 AITSIGVRGKDSVCVVTQKKVP-DKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVL 114 (246)
Q Consensus 36 G~tvigi~~~dgVvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 114 (246)
|+|+|||+++||||||+|++.+ +.++..++.+|||+|++|++|+++|..+|++.+.++++.+++.|++.++++++++.+
T Consensus 1 G~t~igi~~~dgVvla~d~~~~~~~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
T TIGR03634 1 GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRILKAEAKLYELRRGRPMSVKAL 80 (185)
T ss_pred CCcEEEEEeCCEEEEEEcCcccCCCEEecCCcccEEEcCCCEEEEcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 7899999999999999999998 788888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCceeeeeeEEEecCChHHHHHHHHhhccCCCCCCHHHH
Q 025892 115 SRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFSYEET 194 (246)
Q Consensus 115 a~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~s~~ea 194 (246)
+++|++.+|.+ ++|||+|++||||||+ .||+||.+||+|++.+++++|+|+++++++++||+.| +++||++||
T Consensus 81 a~~l~~~~~~~----~~rP~~v~~ivaG~d~-~g~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~--~~~~s~~ea 153 (185)
T TIGR03634 81 ATLLSNILNSN----RFFPFIVQLLVGGVDE-EGPHLYSLDPAGGIIEDDYTATGSGSPVAYGVLEDEY--REDMSVEEA 153 (185)
T ss_pred HHHHHHHHHhc----CCCCeEEEEEEEEEeC-CCCEEEEECCCCCeEECCEEEEcCcHHHHHHHHHhcC--CCCCCHHHH
Confidence 99999999765 5799999999999996 6899999999999999999999999999999999996 789999999
Q ss_pred HHHHHHHHHHhhhccCCCC-cEEEEEEEeCC
Q 025892 195 VQTAVSALQSVLQEDFKAT-EIEVGVVRSDD 224 (246)
Q Consensus 195 ~~l~~~al~~~~~~d~~~~-~iei~iv~~~~ 224 (246)
++++++||+.+.+|++.++ +++|++++++|
T Consensus 154 ~~l~~~~l~~~~~r~~~~~~~~~v~ii~~~g 184 (185)
T TIGR03634 154 KKLAVRAIKSAIERDVASGNGIDVAVITKDG 184 (185)
T ss_pred HHHHHHHHHHHHHhcccCCCCEEEEEEcCCC
Confidence 9999999999999997764 89999999876
No 30
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.6e-43 Score=290.60 Aligned_cols=186 Identities=27% Similarity=0.450 Sum_probs=175.0
Q ss_pred ceEEEEEcCCeEEEEEeccCC-CcccccCCceeeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q 025892 37 ITSIGVRGKDSVCVVTQKKVP-DKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLS 115 (246)
Q Consensus 37 ~tvigi~~~dgVvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 115 (246)
+|+|||+++||||||+|++.+ +.++.+++.+||++|++|++++++|+.+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 tt~iai~~~dgvvia~d~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (188)
T cd03764 1 TTTVGIVCKDGVVLAADKRASMGNFIASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRILKAEARLYELRRGRPMSIKALA 80 (188)
T ss_pred CcEEEEEeCCEEEEEEccccccCCEEecCCcccEEEccCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 589999999999999999999 6888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCceeeeeeEEEecCChHHHHHHHHhhccCCCCCCHHHHH
Q 025892 116 RWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFSYEETV 195 (246)
Q Consensus 116 ~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~s~~ea~ 195 (246)
+++++.+|.+ ++|||+|++||||||+ ++|+||.+||+|++.+++++|+|+|+++++++||+.| +++|+++||+
T Consensus 81 ~~i~~~~~~~----~~~P~~~~~lvaG~d~-~~~~ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~~--~~~~~~~ea~ 153 (188)
T cd03764 81 TLLSNILNSS----KYFPYIVQLLIGGVDE-EGPHLYSLDPLGSIIEDKYTATGSGSPYAYGVLEDEY--KEDMTVEEAK 153 (188)
T ss_pred HHHHHHHHhc----CCCCcEEEEEEEEEeC-CCCEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHhcC--CCCCCHHHHH
Confidence 9999999764 5789999999999997 7899999999999999999999999999999999985 7899999999
Q ss_pred HHHHHHHHHhhhccCCCC-cEEEEEEEeCCceEEEcC
Q 025892 196 QTAVSALQSVLQEDFKAT-EIEVGVVRSDDRVFRVLS 231 (246)
Q Consensus 196 ~l~~~al~~~~~~d~~~~-~iei~iv~~~~~~~~~l~ 231 (246)
+++++||+.+.+||+.++ +++|++|++++ ++.++
T Consensus 154 ~l~~~~l~~~~~rd~~~~~~i~i~iv~~~g--~~~~~ 188 (188)
T cd03764 154 KLAIRAIKSAIERDSASGDGIDVVVITKDG--YKELE 188 (188)
T ss_pred HHHHHHHHHHHhhcCCCCCcEEEEEECCCC--eEeCC
Confidence 999999999999997664 89999999886 77763
No 31
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.5e-43 Score=298.49 Aligned_cols=186 Identities=13% Similarity=0.216 Sum_probs=169.3
Q ss_pred ceEEEEEcCCeEEEEEeccCCCcccccCCceeeEEec----CcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCC-CCCH
Q 025892 37 ITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPIT----KYLGLLATGNTADARSLVHQARNEAAEYRFKFGY-EMPV 111 (246)
Q Consensus 37 ~tvigi~~~dgVvlaad~~~~~~l~~~~~~~Ki~~i~----~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~-~~~~ 111 (246)
|-+|||+++||||||+|+|.+++++..++.+||++|+ +|++|++||+.+|++.+.+++|.+++.|++++|+ ++++
T Consensus 1 ~~~vGIk~kdGVVLaadkr~~~~l~~~~~~~KI~~I~~~~d~~I~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~v 80 (236)
T cd03765 1 TYCLGIKLDAGLVFASDSRTNAGVDNISTYRKMFVFSVPGERVIVLLTAGNLATTQAVISLLQRDLEDPEETNLLNAPTM 80 (236)
T ss_pred CeEEEEEeCCeEEEEEccCccCCCccccccceEEEecCCCCCEEEEEcCCcHHHHHHHHHHHHHHHHhhHHhhCCCCCCH
Confidence 4589999999999999999988877767889999998 8999999999999999999999999999999999 8999
Q ss_pred HHHHHHHHHHhhh-hhccCC-----CCCccceeEEEEEeCCCCcEEEEEcCCceeeee----eEEEecCChHHHHHHHHh
Q 025892 112 DVLSRWIADKSQV-YTQHAY-----MRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGH----KATSAGLKEQEAINFLEK 181 (246)
Q Consensus 112 ~~la~~l~~~~~~-~t~~~~-----~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~----~~~a~G~g~~~~~~~Le~ 181 (246)
+.+|+++++.++. ++|..+ .|||+|++||||||++.||+||++||+|++.++ +++|+|. +++++++||+
T Consensus 81 ~~la~~i~~~l~~~~~q~~~~~~~~~rp~gvslIigG~D~~~Gp~LY~idpsG~~~e~~a~~~~~AiG~-~~~a~~~Lek 159 (236)
T cd03765 81 FDAARYVGETLREVQEQDREALKKAGIDFSASFILGGQIKGEEPRLFLIYPQGNFIEATPDTPFLQIGE-TKYGKPILDR 159 (236)
T ss_pred HHHHHHHHHHHHHHHhhcccccccCCcceEEEEEEEeEECCCCCEEEEECCCCCEEeecCCCceeeeCC-chhhHHHHHH
Confidence 9999999998644 455543 489999999999996678999999999999999 4589996 6999999999
Q ss_pred hccCCCCCCHHHHHHHHHHHHHHhhhccCCCC-cEEEEEEEeCCc
Q 025892 182 KMKNDPAFSYEETVQTAVSALQSVLQEDFKAT-EIEVGVVRSDDR 225 (246)
Q Consensus 182 ~~~~~~~~s~~ea~~l~~~al~~~~~~d~~~~-~iei~iv~~~~~ 225 (246)
+| +++||++||++++++||..+..||..++ +|+|++|+++|.
T Consensus 160 ~y--k~~ms~eeai~la~~al~~a~~rd~~sg~~iev~vI~k~G~ 202 (236)
T cd03765 160 VI--TPDTSLEDAAKCALVSMDSTMRSNLSVGPPLDLLVYERDSL 202 (236)
T ss_pred hc--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEECCCe
Confidence 96 7899999999999999999999997765 899999999974
No 32
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.5e-43 Score=288.58 Aligned_cols=182 Identities=16% Similarity=0.227 Sum_probs=171.4
Q ss_pred ceEEEEEcCCeEEEEEeccCC-CcccccCCceeeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q 025892 37 ITSIGVRGKDSVCVVTQKKVP-DKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLS 115 (246)
Q Consensus 37 ~tvigi~~~dgVvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 115 (246)
+|+|||+++||||||+|++.+ +.++.+++.+||++|++|++|+++|+.+|++.+.+.++.+++.|++.++++++++.++
T Consensus 1 ~t~igi~~~dgVvla~D~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~~a 80 (188)
T cd03762 1 TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQLHDRIYCCRSGSAADTQAIADYVRYYLDMHSIELGEPPLVKTAA 80 (188)
T ss_pred CeEEEEEECCeEEEEEcccccCCceEEcCCcccEEEccCCEEEEecccHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHH
Confidence 589999999999999999998 5788788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCceeeeeeEEEecCChHHHHHHHHhhccCCCCCCHHHHH
Q 025892 116 RWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFSYEETV 195 (246)
Q Consensus 116 ~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~s~~ea~ 195 (246)
++|++.++.+ .|||++++||||+|++.||+||.+||.|++.+++++++|+++++++++||+.| +++||++||+
T Consensus 81 ~~l~~~~~~~-----~~~~~~~~ii~G~d~~~gp~ly~~d~~G~~~~~~~~~~G~g~~~~~~~Le~~~--~~~~s~~ea~ 153 (188)
T cd03762 81 SLFKNLCYNY-----KEMLSAGIIVAGWDEQNGGQVYSIPLGGMLIRQPFAIGGSGSTYIYGYVDANY--KPGMTLEECI 153 (188)
T ss_pred HHHHHHHHhc-----cccceeeEEEEEEcCCCCcEEEEECCCCCEEecCEEEEcccHHHHHHHHHhcC--CCCCCHHHHH
Confidence 9999999765 37999999999999767899999999999999999999999999999999985 7899999999
Q ss_pred HHHHHHHHHhhhccCCCC-cEEEEEEEeCCc
Q 025892 196 QTAVSALQSVLQEDFKAT-EIEVGVVRSDDR 225 (246)
Q Consensus 196 ~l~~~al~~~~~~d~~~~-~iei~iv~~~~~ 225 (246)
+++++||+.+.+||+.++ +++|++|++++.
T Consensus 154 ~l~~~al~~~~~rd~~~~~~~~i~~i~~~g~ 184 (188)
T cd03762 154 KFVKNALSLAMSRDGSSGGVIRLVIITKDGV 184 (188)
T ss_pred HHHHHHHHHHHHhccccCCCEEEEEECCCCE
Confidence 999999999999998765 899999998874
No 33
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.6e-43 Score=288.11 Aligned_cols=185 Identities=19% Similarity=0.278 Sum_probs=172.1
Q ss_pred ceEEEEEcCCeEEEEEeccCC-CcccccCCceeeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q 025892 37 ITSIGVRGKDSVCVVTQKKVP-DKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLS 115 (246)
Q Consensus 37 ~tvigi~~~dgVvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 115 (246)
+|+|||+++||||||+|+|.+ +.++..++.+|||+|+++++|+++|+.+|++.+.+.++.+++.|+++++++++++.++
T Consensus 1 tt~igi~~~dgvvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (189)
T cd03763 1 TTIVGVVFKDGVVLGADTRATEGPIVADKNCEKIHYIAPNIYCCGAGTAADTEAVTNMISSNLELHRLNTGRKPRVVTAL 80 (189)
T ss_pred CeEEEEEECCeEEEEEcCCcccCceEEcCCccceEEecCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 589999999999999999999 4677788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCceeeeeeEEEecCChHHHHHHHHhhccCCCCCCHHHHH
Q 025892 116 RWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFSYEETV 195 (246)
Q Consensus 116 ~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~s~~ea~ 195 (246)
++|++.++.|+ .||+|++||||||+ .||+||.+||.|++.+++++|+|+++..++++||+.| +|+||++||+
T Consensus 81 ~~l~~~l~~~~-----~p~~v~~ivaG~d~-~g~~ly~~d~~G~~~~~~~~a~G~~~~~~~~~L~~~~--~~~ls~~ea~ 152 (189)
T cd03763 81 TMLKQHLFRYQ-----GHIGAALVLGGVDY-TGPHLYSIYPHGSTDKLPFVTMGSGSLAAMSVLEDRY--KPDMTEEEAK 152 (189)
T ss_pred HHHHHHHHHcC-----CccceeEEEEeEcC-CCCEEEEECCCCCEEecCEEEEcCCHHHHHHHHHhhc--CCCCCHHHHH
Confidence 99999997662 39999999999996 6899999999999999999999999999999999995 7899999999
Q ss_pred HHHHHHHHHhhhccCCCC-cEEEEEEEeCCceEEEcC
Q 025892 196 QTAVSALQSVLQEDFKAT-EIEVGVVRSDDRVFRVLS 231 (246)
Q Consensus 196 ~l~~~al~~~~~~d~~~~-~iei~iv~~~~~~~~~l~ 231 (246)
+++++||+.+.+||+.++ +++|++|++++ ++...
T Consensus 153 ~l~~~~l~~~~~rd~~~~~~~~v~ii~~~g--~~~~~ 187 (189)
T cd03763 153 KLVCEAIEAGIFNDLGSGSNVDLCVITKDG--VEYLR 187 (189)
T ss_pred HHHHHHHHHHHHhcCcCCCceEEEEEcCCc--EEEec
Confidence 999999999999997654 89999999987 55544
No 34
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=100.00 E-value=3.6e-42 Score=282.45 Aligned_cols=186 Identities=34% Similarity=0.565 Sum_probs=173.3
Q ss_pred HhccCceEEEEEcCCeEEEEEeccCC-Cccc-ccCCceeeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCC
Q 025892 32 VKATAITSIGVRGKDSVCVVTQKKVP-DKLL-DQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEM 109 (246)
Q Consensus 32 v~~~G~tvigi~~~dgVvlaad~~~~-~~l~-~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~ 109 (246)
|+ +|+|+|||+++||||||+|++.+ +..+ .++..+|||+|++|+++++||+.+|++.+.++++.++..|++.+++++
T Consensus 1 v~-~G~t~vgi~~~dgvvla~d~~~~~g~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~ 79 (190)
T PF00227_consen 1 VN-NGTTVVGIKGKDGVVLAADKRISYGSKLRSPNTVDKIFKINDNIIIGFSGLTADFQYLIRRLREEAQEYRFSYGRPI 79 (190)
T ss_dssp HH-TSBEEEEEEESSEEEEEEEEEEEETTEEEESSTSSSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGT
T ss_pred CC-CCeEEEEEEECCEEEEEEccccccccccccccccceeeeccCcceeeccccccchHHHHhhhcccchhhhhccCccc
Confidence 35 49999999999999999999998 4444 455579999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCceeeee-eEEEecCChHHHHHHHHhhccCCCC
Q 025892 110 PVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGH-KATSAGLKEQEAINFLEKKMKNDPA 188 (246)
Q Consensus 110 ~~~~la~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~-~~~a~G~g~~~~~~~Le~~~~~~~~ 188 (246)
+++.+++.+++.++.++++.++|||++++|+||||+.++|+||.+||+|++.++ +++|+|+|++.++++|++.| +++
T Consensus 80 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~~li~G~d~~~~~~l~~vd~~G~~~~~~~~~aiG~g~~~~~~~l~~~~--~~~ 157 (190)
T PF00227_consen 80 SPEYLAKAIASLIQNYTYRSGRRPYGVSLLIAGYDEDGGPQLYSVDPSGSYIECKRFAAIGSGSQFAQPILEKLY--KPD 157 (190)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTSTTSEEEEEEEEETTTEEEEEEEETTSEEEEBSSEEEESTTHHHHHHHHHHHH--TTT
T ss_pred cchhhhhhhHHHHhhhcccccccCccccceeeeeccccccceeeeccccccccccccccchhcchhhhHHHHhhc--cCC
Confidence 999999999999999999999999999999999998666999999999999999 69999999999999999996 789
Q ss_pred CCHHHHHHHHHHHHHHhhhccCCC-CcEEEEEE
Q 025892 189 FSYEETVQTAVSALQSVLQEDFKA-TEIEVGVV 220 (246)
Q Consensus 189 ~s~~ea~~l~~~al~~~~~~d~~~-~~iei~iv 220 (246)
|+++||++++++||+.+.++|..+ ++++|++|
T Consensus 158 ~~~~ea~~~~~~~l~~~~~~d~~~~~~~~v~vi 190 (190)
T PF00227_consen 158 LSLEEAIELALKALKEAIDRDILSGDNIEVAVI 190 (190)
T ss_dssp SSHHHHHHHHHHHHHHHHHHBTTSTSEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHhhCCccCCeEEEEEC
Confidence 999999999999999999998765 58999986
No 35
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.4e-41 Score=279.01 Aligned_cols=182 Identities=24% Similarity=0.424 Sum_probs=170.6
Q ss_pred ceEEEEEcCCeEEEEEeccCCCcccc-cCCceeeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q 025892 37 ITSIGVRGKDSVCVVTQKKVPDKLLD-QTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLS 115 (246)
Q Consensus 37 ~tvigi~~~dgVvlaad~~~~~~l~~-~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 115 (246)
+|+|||+++||||||+|++.+..+.. .++.+|||+|+++++|+++|+.+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 tt~i~i~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (189)
T cd01912 1 TTIVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKISDNILLGTAGSAADTQALTRLLKRNLRLYELRNGRELSVKAAA 80 (189)
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEEcCCcCcEEEccCCEEEEccccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 58999999999999999999955544 78899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCceeeeeeEEEecCChHHHHHHHHhhccCCCCCCHHHHH
Q 025892 116 RWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFSYEETV 195 (246)
Q Consensus 116 ~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~s~~ea~ 195 (246)
+++++.++.+++ |||++++||||+|++++|+||.+||+|++.+++++|+|+++++++++||+.| +++||++||+
T Consensus 81 ~~l~~~~~~~~~----~P~~~~~iv~G~d~~~~~~l~~id~~G~~~~~~~~a~G~~~~~~~~~Le~~~--~~~~s~~ea~ 154 (189)
T cd01912 81 NLLSNILYSYRG----FPYYVSLIVGGVDKGGGPFLYYVDPLGSLIEAPFVATGSGSKYAYGILDRGY--KPDMTLEEAV 154 (189)
T ss_pred HHHHHHHHhcCC----CCeEEEEEEEEEcCCCCeEEEEECCCCCeEecCEEEEcccHHHHHHHHHhcc--CCCCCHHHHH
Confidence 999999977643 7999999999999767899999999999999999999999999999999995 7899999999
Q ss_pred HHHHHHHHHhhhccCCCC-cEEEEEEEeCC
Q 025892 196 QTAVSALQSVLQEDFKAT-EIEVGVVRSDD 224 (246)
Q Consensus 196 ~l~~~al~~~~~~d~~~~-~iei~iv~~~~ 224 (246)
+++++||+.+.+||+.++ +++|++|++++
T Consensus 155 ~~~~~~l~~~~~~d~~~~~~~~v~vi~~~g 184 (189)
T cd01912 155 ELVKKAIDSAIERDLSSGGGVDVAVITKDG 184 (189)
T ss_pred HHHHHHHHHHHHhcCccCCcEEEEEECCCC
Confidence 999999999999987664 89999999886
No 36
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=100.00 E-value=7.9e-41 Score=272.70 Aligned_cols=180 Identities=41% Similarity=0.676 Sum_probs=168.4
Q ss_pred ceEEEEEcCCeEEEEEeccCCCcccc-cCCceeeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q 025892 37 ITSIGVRGKDSVCVVTQKKVPDKLLD-QTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLS 115 (246)
Q Consensus 37 ~tvigi~~~dgVvlaad~~~~~~l~~-~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 115 (246)
+|+|||+++||||||+|++.+..+.. .++.+|||+|+++++|+++|..+|++.+.+.++.++..|++.++++++++.++
T Consensus 1 tt~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (182)
T cd01906 1 TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLRKEAQLYRLRYGEPIPVEALA 80 (182)
T ss_pred CcEEEEEeCCEEEEEEecccCCcCeecCCCcceEEEECCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 58999999999999999999855444 77899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCceeeeeeEEEecCChHHHHHHHHhhccCCCCCCHHHHH
Q 025892 116 RWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFSYEETV 195 (246)
Q Consensus 116 ~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~s~~ea~ 195 (246)
++|++.+|.+++. .|||++++||||+|+..+|+||.+||+|++.+++++|+|+++++++++||+.| +++||.+||+
T Consensus 81 ~~l~~~~~~~~~~--~~p~~~~~lv~G~d~~~~~~Ly~id~~G~~~~~~~~a~G~g~~~~~~~L~~~~--~~~~s~~ea~ 156 (182)
T cd01906 81 KLLANLLYEYTQS--LRPLGVSLLVAGVDEEGGPQLYSVDPSGSYIEYKATAIGSGSQYALGILEKLY--KPDMTLEEAI 156 (182)
T ss_pred HHHHHHHHHhCCC--ccChheEEEEEEEeCCCCcEEEEECCCCCEeeccEEEECCCcHHHHHHHHHHc--cCCCCHHHHH
Confidence 9999999998765 79999999999999757999999999999999999999999999999999996 6789999999
Q ss_pred HHHHHHHHHhhhccCCC-CcEEEEEE
Q 025892 196 QTAVSALQSVLQEDFKA-TEIEVGVV 220 (246)
Q Consensus 196 ~l~~~al~~~~~~d~~~-~~iei~iv 220 (246)
+++++||+.+.++|..+ .+++|+++
T Consensus 157 ~l~~~~l~~~~~~~~~~~~~~~i~ii 182 (182)
T cd01906 157 ELALKALKSALERDLYSGGNIEVAVI 182 (182)
T ss_pred HHHHHHHHHHHcccCCCCCCEEEEEC
Confidence 99999999999999855 48999875
No 37
>KOG0179 consensus 20S proteasome, regulatory subunit beta type PSMB1/PRE7 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-37 Score=248.60 Aligned_cols=196 Identities=18% Similarity=0.320 Sum_probs=179.4
Q ss_pred HHhccCceEEEEEcCCeEEEEEeccCC-CcccccCCceeeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCC
Q 025892 31 AVKATAITSIGVRGKDSVCVVTQKKVP-DKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEM 109 (246)
Q Consensus 31 av~~~G~tvigi~~~dgVvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~ 109 (246)
+....|.|+|||.+.|++|+|+|+|.+ +.-+.++..+|||+++|+++++.+|+++|+..|...++.....|+..++..|
T Consensus 24 PY~~NGGT~vaIaG~dFavvA~DTR~s~gy~I~sR~~~Ki~~l~D~~vl~~sGF~aD~l~L~k~i~~r~~~Y~~~h~k~m 103 (235)
T KOG0179|consen 24 PYEDNGGTTVAIAGEDFAVVAGDTRMSSGYNINSRDQSKIFKLGDNIVLGSSGFYADTLALVKVIKSRIKQYEHDHNKKM 103 (235)
T ss_pred ccccCCceEEEEcCCceEEEecccccccceeeeccccchheeccCceEEecccchhhHHHHHHHHHHHHHHHhhcccccc
Confidence 334348899999999999999999999 5567788999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCceeeeeeEEEecCChHHHHHHHHhhccC----
Q 025892 110 PVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKN---- 185 (246)
Q Consensus 110 ~~~~la~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~---- 185 (246)
++..+|++|+..+ | .+++.||.+..+|||+|+++++.+|+.||.|++.+..+.|.|+++..++++|+.++..
T Consensus 104 s~~s~A~lls~~L--Y--~kRFFPYYv~~ilaGiDeeGKG~VySyDPvGsyer~~~~AgGsa~~mI~PfLDnQi~~kn~~ 179 (235)
T KOG0179|consen 104 SIHSAAQLLSTIL--Y--SKRFFPYYVFNILAGIDEEGKGAVYSYDPVGSYERVTCRAGGSAASMIQPFLDNQIGHKNQN 179 (235)
T ss_pred cHHHHHHHHHHHH--h--hcccccceeeeeeecccccCceeEEeecCCcceeeeeeecCCcchhhhhhhhhhhccCcCcc
Confidence 9999999999999 5 4578999999999999998889999999999999999999999999999999987632
Q ss_pred -----CCCCCHHHHHHHHHHHHHHhhhccCCCC-cEEEEEEEeCCceEEEc
Q 025892 186 -----DPAFSYEETVQTAVSALQSVLQEDFKAT-EIEVGVVRSDDRVFRVL 230 (246)
Q Consensus 186 -----~~~~s~~ea~~l~~~al~~~~~~d~~~~-~iei~iv~~~~~~~~~l 230 (246)
++.||+|+|++|+..++..+.+||+..+ .++|+|+++++...+.+
T Consensus 180 ~e~~~~~~Ls~e~ai~lv~d~F~SAaERdI~tGD~l~i~I~tk~gV~~e~~ 230 (235)
T KOG0179|consen 180 LENAERTPLSLERAIRLVKDAFTSAAERDIYTGDKLEICIITKDGVEVETL 230 (235)
T ss_pred cccCcccccCHHHHHHHHHHHhhhhhhcccccCCcEEEEEEecCCEEEEee
Confidence 2458999999999999999999999986 89999999998755554
No 38
>KOG0175 consensus 20S proteasome, regulatory subunit beta type PSMB5/PSMB8/PRE2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-37 Score=255.40 Aligned_cols=199 Identities=21% Similarity=0.242 Sum_probs=186.7
Q ss_pred cCceEEEEEcCCeEEEEEeccCC-CcccccCCceeeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHH
Q 025892 35 TAITSIGVRGKDSVCVVTQKKVP-DKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDV 113 (246)
Q Consensus 35 ~G~tvigi~~~dgVvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 113 (246)
+|||++|++++.|||+|+|+|++ +.++.++.++||.+|+++++-+++|-++|++.+.+.+.++|.+|++++++.|++..
T Consensus 70 hGTTTLAF~f~~GvivAvDSRAs~G~YIasqtv~KVIeIn~ylLGTmAGgAADCqfWer~L~kecRL~eLRnkeriSVsa 149 (285)
T KOG0175|consen 70 HGTTTLAFKFKGGVIVAVDSRASAGSYIASQTVKKVIEINPYLLGTMAGGAADCQFWERVLAKECRLHELRNKERISVSA 149 (285)
T ss_pred CCceEEEEEecCcEEEEEeccccccceeechhhceeeeechhhhhcccCcchhhHHHHHHHHHHHHHHHHhcCcceehHH
Confidence 59999999999999999999999 89999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCceeeeeeEEEecCChHHHHHHHHhhccCCCCCCHHH
Q 025892 114 LSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFSYEE 193 (246)
Q Consensus 114 la~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~s~~e 193 (246)
.++.|+++++.| +++ -+.+..+|||||+ .||.||.+|..|+-..-+-.++|+|+.+|.++|+..| +++||.+|
T Consensus 150 ASKllsN~~y~Y---kGm-GLsmGtMi~G~Dk-~GP~lyYVDseG~Rl~G~~FSVGSGs~yAYGVLDsgY--r~dls~eE 222 (285)
T KOG0175|consen 150 ASKLLSNMVYQY---KGM-GLSMGTMIAGWDK-KGPGLYYVDSEGTRLSGDLFSVGSGSTYAYGVLDSGY--RYDLSDEE 222 (285)
T ss_pred HHHHHHHHHhhc---cCc-chhheeeEeeccC-CCCceEEEcCCCCEecCceEeecCCCceeEEeeccCC--CCCCCHHH
Confidence 999999999776 333 6889999999997 8999999999999999999999999999999999985 78899999
Q ss_pred HHHHHHHHHHHhhhccCCCC-cEEEEEEEeCCceEEEcCHHHHHHHHHHh
Q 025892 194 TVQTAVSALQSVLQEDFKAT-EIEVGVVRSDDRVFRVLSSEEIDEHLTAI 242 (246)
Q Consensus 194 a~~l~~~al~~~~~~d~~~~-~iei~iv~~~~~~~~~l~~~ei~~~~~~i 242 (246)
|.+|+++|+..+..||..++ .+.++.|+++| +.++++.++.++..++
T Consensus 223 A~~L~rrAI~hAThRDaySGG~vnlyHv~edG--W~~v~~~Dv~~L~~~~ 270 (285)
T KOG0175|consen 223 AYDLARRAIYHATHRDAYSGGVVNLYHVKEDG--WVKVSNTDVSELHYHY 270 (285)
T ss_pred HHHHHHHHHHHHHhcccccCceEEEEEECCcc--ceecCCccHHHHHHHH
Confidence 99999999999999999887 69999999997 7888988888885544
No 39
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-37 Score=242.31 Aligned_cols=188 Identities=18% Similarity=0.303 Sum_probs=175.8
Q ss_pred eEEEEEcCCeEEEEEeccCC-CcccccCCceeeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHH
Q 025892 38 TSIGVRGKDSVCVVTQKKVP-DKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLSR 116 (246)
Q Consensus 38 tvigi~~~dgVvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~ 116 (246)
+++||++.|+|++|+|+... +-++..++.+|++.|++++.|+++|..+|+.++.+++++.++.|++++|.+++|+.+|+
T Consensus 3 ~llGIkg~dfvilAsDt~~~~si~~~k~~~dK~~~ls~~~lm~~~Ge~GDt~qF~eyi~~Ni~LYkirnGyeLSp~~aah 82 (200)
T KOG0177|consen 3 TLLGIKGPDFVILASDTSAARSILVLKDDHDKIHRLSDHILMATVGEAGDTVQFTEYIQKNIQLYKIRNGYELSPSAAAH 82 (200)
T ss_pred eEEEeecCCEEEEeecchhhcceEEecccccceEEeccceeeeeecCCCceehHHHHHHhhhhHHhhhcCCcCCHHHHHH
Confidence 78999999999999999988 67778889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCceeeeeeEEEecCChHHHHHHHHhhccCCCCCCHHHHHH
Q 025892 117 WIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFSYEETVQ 196 (246)
Q Consensus 117 ~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~s~~ea~~ 196 (246)
+..+.+.++.++ .+||.|++++||+|++.||.||++|..|+..+.++++.|.++.++.++|++.| +|+||.+||++
T Consensus 83 FtR~~La~~LRs--r~~yqV~~LvaGYd~~~gp~L~~iDyla~~~~vpy~~hGy~~~f~~sIlDr~Y--~pdmt~eea~~ 158 (200)
T KOG0177|consen 83 FTRRELAESLRS--RTPYQVNILVAGYDPEEGPELYYIDYLATLVSVPYAAHGYGSYFCLSILDRYY--KPDMTIEEALD 158 (200)
T ss_pred HHHHHHHHHHhc--CCCceEEEEEeccCCCCCCceeeehhhhhcccCCcccccchhhhhHHHHHhhh--CCCCCHHHHHH
Confidence 999999887642 57999999999999999999999999999999999999999999999999985 89999999999
Q ss_pred HHHHHHHHhhhcc-CCCCcEEEEEEEeCCceEEEcC
Q 025892 197 TAVSALQSVLQED-FKATEIEVGVVRSDDRVFRVLS 231 (246)
Q Consensus 197 l~~~al~~~~~~d-~~~~~iei~iv~~~~~~~~~l~ 231 (246)
+..+|+.++.+|- ++..++.|.+|+++| .+.++
T Consensus 159 lmkKCv~El~kRlvin~~~f~v~IVdkdG--ir~~~ 192 (200)
T KOG0177|consen 159 LMKKCVLELKKRLVINLPGFIVKIVDKDG--IRKLD 192 (200)
T ss_pred HHHHHHHHHHHhcccCCCCcEEEEEcCCC--ceecc
Confidence 9999999999985 456799999999998 56554
No 40
>KOG0174 consensus 20S proteasome, regulatory subunit beta type PSMB6/PSMB9/PRE3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-36 Score=240.52 Aligned_cols=203 Identities=17% Similarity=0.230 Sum_probs=189.2
Q ss_pred HHhccCceEEEEEcCCeEEEEEeccCC-CcccccCCceeeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCC
Q 025892 31 AVKATAITSIGVRGKDSVCVVTQKKVP-DKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEM 109 (246)
Q Consensus 31 av~~~G~tvigi~~~dgVvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~ 109 (246)
.+. +|+|++|+++++||||++|+|.+ +.++.++-.+|+.+|.|||+||.||.++|+|.+.+.++.....|..++++++
T Consensus 15 evs-tGTTImAv~y~gGVvlGaDSRTs~GayvanRvtDKlT~itD~i~cCRSGSAADtQaiaD~~~Y~L~~~~~q~~~~p 93 (224)
T KOG0174|consen 15 EVS-TGTTIMAVEYDGGVVLGADSRTSTGAYVANRVTDKLTPITDNIYCCRSGSAADTQAIADIVRYHLELYTIQENKPP 93 (224)
T ss_pred ccc-cCceEEEEEEcCcEEEeccCCccchHHHHhhhcccceeccccEEEecCCchhhHHHHHHHHHHHHHHhhhhcCCCc
Confidence 355 69999999999999999999999 8899999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCceeeeeeEEEecCChHHHHHHHHhhccCCCCC
Q 025892 110 PVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAF 189 (246)
Q Consensus 110 ~~~~la~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~ 189 (246)
.+...|+.+.++.++|. .-+.+.+||||||+..|.++|.+.-.|+..+.++..-|+|+.+++++++.+| +|+|
T Consensus 94 ~v~~aA~l~r~~~Y~~r-----e~L~AgliVAGwD~~~gGqVY~iplGG~l~rq~~aIgGSGStfIYGf~D~~~--r~nM 166 (224)
T KOG0174|consen 94 LVHTAASLFREICYNYR-----EMLSAGLIVAGWDEKEGGQVYSIPLGGSLTRQPFAIGGSGSTFIYGFCDANW--RPNM 166 (224)
T ss_pred hHHHHHHHHHHHHHhCH-----HhhhcceEEeecccccCceEEEeecCceEeecceeeccCCceeeeeeehhhc--CCCC
Confidence 99999999999997663 2588999999999999999999999999999999999999999999999995 8999
Q ss_pred CHHHHHHHHHHHHHHhhhccCCCC-cEEEEEEEeCCceEEEcCHHHHHHHHHH
Q 025892 190 SYEETVQTAVSALQSVLQEDFKAT-EIEVGVVRSDDRVFRVLSSEEIDEHLTA 241 (246)
Q Consensus 190 s~~ea~~l~~~al~~~~~~d~~~~-~iei~iv~~~~~~~~~l~~~ei~~~~~~ 241 (246)
++||++.++.+|+..++.||-+++ .|.+.+++++|..++.+.++++.++..+
T Consensus 167 t~EE~~~fvk~Av~lAi~rDGsSGGviR~~~I~~~Gver~~~~~d~~~~~~v~ 219 (224)
T KOG0174|consen 167 TLEECVRFVKNAVSLAIERDGSSGGVIRLVIINKAGVERRFFPGDKLGQFAVE 219 (224)
T ss_pred CHHHHHHHHHHHHHHHHhccCCCCCEEEEEEEccCCceEEEecCCcccccccc
Confidence 999999999999999999998886 7999999999998999999998776543
No 41
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.2e-35 Score=238.90 Aligned_cols=189 Identities=21% Similarity=0.295 Sum_probs=175.4
Q ss_pred HHHhccCceEEEEEcCCeEEEEEeccCC-CcccccCCceeeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCC
Q 025892 30 KAVKATAITSIGVRGKDSVCVVTQKKVP-DKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYE 108 (246)
Q Consensus 30 ~av~~~G~tvigi~~~dgVvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 108 (246)
++.+ +|+|++|+.++||||+++|+|++ ++++..++.+||+.|.++|+||.+|-++|...+.+.+..+.++|+++.+++
T Consensus 32 ~~tk-TGTtIvgv~~k~gvIlgADtRaT~G~IvaDKnC~KIH~ia~~IyccGAGtAADte~vt~m~ss~l~Lh~l~t~R~ 110 (271)
T KOG0173|consen 32 KATK-TGTTIVGVIFKDGVILGADTRATEGPIVADKNCEKIHFIAPNIYCCGAGTAADTEMVTRMISSNLELHRLNTGRK 110 (271)
T ss_pred cccc-cCcEEEEEEeCCeEEEeecccccCCCeeecchhHHHhhcccceEEccCCchhhHHHHHHHHHHHHHHHHhccCCC
Confidence 3444 79999999999999999999999 888889999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCceeeeeeEEEecCChHHHHHHHHhhccCCCC
Q 025892 109 MPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPA 188 (246)
Q Consensus 109 ~~~~~la~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~ 188 (246)
+++-...++|.+.+.+|. + -.++.+|+||.|+ .|||||++.|.|+....+|.+.|+|+..++.+||.+| +|+
T Consensus 111 ~rVv~A~~mlkQ~LFrYq---G--~IgA~LiiGGvD~-TGpHLy~i~phGStd~~Pf~alGSGslaAmsvlEsr~--k~d 182 (271)
T KOG0173|consen 111 PRVVTALRMLKQHLFRYQ---G--HIGAALILGGVDP-TGPHLYSIHPHGSTDKLPFTALGSGSLAAMSVLESRW--KPD 182 (271)
T ss_pred CceeeHHHHHHHHHHHhc---C--cccceeEEccccC-CCCceEEEcCCCCcCccceeeeccchHHHHHHHHHhc--Ccc
Confidence 999999999999997662 2 5899999999998 7999999999999999999999999999999999985 899
Q ss_pred CCHHHHHHHHHHHHHHhhhccCCCC-cEEEEEEEeCCceE
Q 025892 189 FSYEETVQTAVSALQSVLQEDFKAT-EIEVGVVRSDDRVF 227 (246)
Q Consensus 189 ~s~~ea~~l~~~al~~~~~~d~~~~-~iei~iv~~~~~~~ 227 (246)
|+.|||.+|+.+|+...+-.|+.++ ++++|+|++.+..|
T Consensus 183 lt~eea~~Lv~eAi~AGi~nDLgSGsnvdlcVI~~~~~~~ 222 (271)
T KOG0173|consen 183 LTKEEAIKLVCEAIAAGIFNDLGSGSNVDLCVITKKGVEY 222 (271)
T ss_pred cCHHHHHHHHHHHHHhhhccccCCCCceeEEEEeCCCccc
Confidence 9999999999999999999999887 89999999776433
No 42
>KOG0185 consensus 20S proteasome, regulatory subunit beta type PSMB4/PRE4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-35 Score=238.46 Aligned_cols=222 Identities=18% Similarity=0.274 Sum_probs=192.9
Q ss_pred ccceeCCCCcch------hhhhHHHHHhccCceEEEEEcCCeEEEEEeccCC-CcccccCCceeeEEecCcEEEEEecch
Q 025892 12 HITIFSPEGRLF------QVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVP-DKLLDQTCVTHLFPITKYLGLLATGNT 84 (246)
Q Consensus 12 ~~t~fsp~Gri~------Q~eya~~av~~~G~tvigi~~~dgVvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~ 84 (246)
.+++|.|.|..- .+.-...++- +||+|||+|++||||||||+..+ +++...++++||+++++|+++++||..
T Consensus 12 a~~~f~~~~~~m~~a~~~~~qrt~~p~v-TGTSVla~ky~~GVviaaD~lgSYGslaR~~nVeRi~kVgdntllG~sGdi 90 (256)
T KOG0185|consen 12 APGTFYPSGSLMENAGDYPIQRTLNPIV-TGTSVLALKYKDGVVIAADTLGSYGSLARYKNVERIFKVGDNTLLGASGDI 90 (256)
T ss_pred CCCcCcCccchhhhccCCCcccccCcee-ccceEEEEEecCceEEEecccccchhhhhhcCceeeEEecCceEEecCccH
Confidence 356777775542 1111334454 69999999999999999999999 899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHHcCCCCCHHHHHHHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCceeeee
Q 025892 85 ADARSLVHQARNEAAEY-RFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGH 163 (246)
Q Consensus 85 ~D~~~l~~~~~~~~~~~-~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~ 163 (246)
+|+|.+.+.+....... ++..|+.+.|+.++++|++++ |.+++.+.|++..++|||+|+.+.|+|-.+|-.|...+.
T Consensus 91 sD~Q~i~r~L~~l~iedn~~~Dg~~l~Pk~ih~yltrvl--Y~rRsKmnPlwntlvVgGv~~~g~~~lg~V~~~G~~Y~~ 168 (256)
T KOG0185|consen 91 SDFQYIQRVLEQLVIEDNRLDDGQSLGPKAIHSYLTRVL--YARRSKMNPLWNTLVVGGVDNTGEPFLGYVDLLGVAYES 168 (256)
T ss_pred HHHHHHHHHHHHHHhcccccccccccChHHHHHHHHHHH--HHhhhccCchhhheeEeeecCCCCeeEEEEeeccccccC
Confidence 99999999998887774 366779999999999999999 667889999999999999998777999999999999999
Q ss_pred eEEEecCChHHHHHHHHhhcc-CCCCCCHHHHHHHHHHHHHHhhhccCCCC-cEEEEEEEeCCceEEEcCHHHHHHH
Q 025892 164 KATSAGLKEQEAINFLEKKMK-NDPAFSYEETVQTAVSALQSVLQEDFKAT-EIEVGVVRSDDRVFRVLSSEEIDEH 238 (246)
Q Consensus 164 ~~~a~G~g~~~~~~~Le~~~~-~~~~~s~~ea~~l~~~al~~~~~~d~~~~-~iei~iv~~~~~~~~~l~~~ei~~~ 238 (246)
+..|+|.|+..+.++|++.|. +.++++.+||.+++.+||+....||+.+. ++++++|+++| +..-.|..|+.-
T Consensus 169 ~~vATGfg~hLa~P~lR~~~~~k~~~~s~eeA~~li~~cMrVL~YRD~ra~n~fqva~v~~eG--v~i~~p~qv~~~ 243 (256)
T KOG0185|consen 169 PVVATGFGAHLALPLLRDEWEKKGEDLSREEAEALIEKCMRVLYYRDARASNEFQVATVDEEG--VTISKPYQVKTN 243 (256)
T ss_pred chhhhhhHHHhhhHHHHHhhhccchhhHHHHHHHHHHHHHHHHhccccccccceEEEEEcccc--eEecCceeeeec
Confidence 999999999999999999985 45789999999999999999999999875 79999999976 555555555433
No 43
>KOG0180 consensus 20S proteasome, regulatory subunit beta type PSMB3/PUP3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-32 Score=213.56 Aligned_cols=184 Identities=18% Similarity=0.233 Sum_probs=172.6
Q ss_pred CceEEEEEcCCeEEEEEeccCC-CcccccCCceeeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Q 025892 36 AITSIGVRGKDSVCVVTQKKVP-DKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVL 114 (246)
Q Consensus 36 G~tvigi~~~dgVvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 114 (246)
|+++||++++|||.||+|.|.. ......++++|||+|+|+++++.+|++.|++++.++++...++|+++.++.|.|+.+
T Consensus 8 Gg~vvAM~gk~cvaIa~D~RlG~q~~tistdf~ki~~igdr~y~GL~glatDvqtl~~~~~fr~nLy~lre~R~i~P~~~ 87 (204)
T KOG0180|consen 8 GGSVVAMAGKNCVAIASDLRLGVQSQTISTDFQKIFKIGDRLYLGLTGLATDVQTLLERLRFRKNLYELREEREIKPETF 87 (204)
T ss_pred CceEEEEeCCceEEEEeccccceeeeeeeccchhheecCCeeEEeccccchhHHHHHHHHHHHHhHHHhhhhcccCcHHH
Confidence 8899999999999999999998 455567899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCceeeee-eEEEecCChHHHHHHHHhhccCCCCCCHHH
Q 025892 115 SRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGH-KATSAGLKEQEAINFLEKKMKNDPAFSYEE 193 (246)
Q Consensus 115 a~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~-~~~a~G~g~~~~~~~Le~~~~~~~~~s~~e 193 (246)
+++++..+++ .++-||.+..+|||+|++++|++..+|..|+.... ++.+.|.+++...+.+|..| +|+|..||
T Consensus 88 s~mvS~~lYe----kRfgpYf~~PvVAGl~~~~kPfIc~mD~IGc~~~~~DFVvsGTa~e~L~GmCE~ly--~pnmepd~ 161 (204)
T KOG0180|consen 88 SSMVSSLLYE----KRFGPYFTEPVVAGLDDDNKPFICGMDLIGCIDAPKDFVVSGTASEQLYGMCEALY--EPNMEPDE 161 (204)
T ss_pred HHHHHHHHHH----hhcCCcccceeEeccCCCCCeeEeecccccCcCccCCeEEecchHHHHHHHHHHhc--CCCCCHHH
Confidence 9999999943 35679999999999999889999999999999865 89999999999999999995 89999999
Q ss_pred HHHHHHHHHHHhhhccCCCC-cEEEEEEEeCCc
Q 025892 194 TVQTAVSALQSVLQEDFKAT-EIEVGVVRSDDR 225 (246)
Q Consensus 194 a~~l~~~al~~~~~~d~~~~-~iei~iv~~~~~ 225 (246)
.++.+.+||.++.+||+-++ +..+++|+++..
T Consensus 162 LFetisQa~Lna~DRDalSGwGa~vyiI~kdkv 194 (204)
T KOG0180|consen 162 LFETISQALLNAVDRDALSGWGAVVYIITKDKV 194 (204)
T ss_pred HHHHHHHHHHhHhhhhhhccCCeEEEEEccchh
Confidence 99999999999999998877 899999999865
No 44
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=100.00 E-value=9.4e-32 Score=216.54 Aligned_cols=165 Identities=15% Similarity=0.136 Sum_probs=141.6
Q ss_pred CceEEEEEcCCeEEEEEeccCC-CcccccCCceeeEEe-cCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHH
Q 025892 36 AITSIGVRGKDSVCVVTQKKVP-DKLLDQTCVTHLFPI-TKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDV 113 (246)
Q Consensus 36 G~tvigi~~~dgVvlaad~~~~-~~l~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 113 (246)
|+|+|||+++||||||+|+|.+ +.++.+++.+||++| +++++|++||..+|++.|.++++.+++.|+. +. ++.
T Consensus 1 gtTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~KI~~i~~d~i~~~~aG~~aD~q~l~~~l~~~~~~y~~--~~---~~~ 75 (172)
T PRK05456 1 GTTILAVRRNGKVAIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEHQG--NL---LRA 75 (172)
T ss_pred CcEEEEEEECCEEEEEECCceEeCcEEEcCCCceEEEeCCCCEEEEEeccHHHHHHHHHHHHHHHHHccC--cc---HHH
Confidence 6899999999999999999999 889999999999999 9999999999999999999999999999873 22 466
Q ss_pred HHHHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCceeeee--eEEEecCChHHHHHHHHhhccCC-CCCC
Q 025892 114 LSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGH--KATSAGLKEQEAINFLEKKMKND-PAFS 190 (246)
Q Consensus 114 la~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~--~~~a~G~g~~~~~~~Le~~~~~~-~~~s 190 (246)
+++.+..+. . ....+|+.+++|++ |. |+||.+|+.|++.+. ++.++|+|+.+++++||+.| + |+|
T Consensus 76 ~a~l~~~l~-~---~~~~~~l~~~~lv~--d~---~~ly~id~~G~~~~~~~~~~a~GSGs~~a~g~ld~~y--~~~~m- 143 (172)
T PRK05456 76 AVELAKDWR-T---DRYLRRLEAMLIVA--DK---EHSLIISGNGDVIEPEDGIIAIGSGGNYALAAARALL--ENTDL- 143 (172)
T ss_pred HHHHHHHHH-h---ccCCCccEEEEEEE--cC---CcEEEECCCCcEeccCCCeEEEecCHHHHHHHHHHhh--hcCCC-
Confidence 665543332 1 12246888999994 43 699999999999766 79999999999999999996 5 899
Q ss_pred HHHHHHHHHHHHHHhhhccCCCC-cEEEEE
Q 025892 191 YEETVQTAVSALQSVLQEDFKAT-EIEVGV 219 (246)
Q Consensus 191 ~~ea~~l~~~al~~~~~~d~~~~-~iei~i 219 (246)
||++++++|++.+.+||..++ +|++-.
T Consensus 144 --eA~~la~kai~~A~~Rd~~sg~~i~v~~ 171 (172)
T PRK05456 144 --SAEEIAEKALKIAADICIYTNHNITIEE 171 (172)
T ss_pred --CHHHHHHHHHHHHHHhCeeCCCcEEEEE
Confidence 999999999999999998776 777653
No 45
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=99.98 E-value=5.5e-31 Score=210.77 Aligned_cols=163 Identities=15% Similarity=0.067 Sum_probs=137.7
Q ss_pred ceEEEEEcCCeEEEEEeccCC-CcccccCCceeeEEecC-cEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Q 025892 37 ITSIGVRGKDSVCVVTQKKVP-DKLLDQTCVTHLFPITK-YLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVL 114 (246)
Q Consensus 37 ~tvigi~~~dgVvlaad~~~~-~~l~~~~~~~Ki~~i~~-~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 114 (246)
+|+|||+++||||||+|+|.+ +.++.+++.+||++|++ |++|+++|..+|++.|.++++.++++|+.+.++ .+
T Consensus 1 tTivgi~~~dgVvlaaD~r~t~G~~v~~~~~~Ki~~i~d~~i~~~~aG~~aD~~~l~~~~~~~~~~y~~~~~~-----~a 75 (171)
T cd01913 1 TTILAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVIAGFAGSTADAFTLFERFEAKLEQYPGNLLR-----AA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeccEEEcCCcceEEEeCCCCEEEEecccHHHHHHHHHHHHHHHHHhhchHHH-----HH
Confidence 599999999999999999999 88999999999999999 999999999999999999999999999988774 33
Q ss_pred HHHHHHHhhhhhccCCCCCcc-ceeEEEEEeCCCCcEEEEEcCCceeeeee--EEEecCChHHHHHHHHhhccCCC-CCC
Q 025892 115 SRWIADKSQVYTQHAYMRPLG-VVAMVLGIDEEKGPQLYKCDPAGHFFGHK--ATSAGLKEQEAINFLEKKMKNDP-AFS 190 (246)
Q Consensus 115 a~~l~~~~~~~t~~~~~rP~~-v~~iv~G~D~~~gp~Ly~id~~G~~~~~~--~~a~G~g~~~~~~~Le~~~~~~~-~~s 190 (246)
++.+...+ .| +.+|+. +.++++++ ++||.+||.|++.+.+ +.++|||+++++++||.+| ++ +||
T Consensus 76 a~l~~~l~-~~----~~~~~l~a~~iv~~~-----~~ly~id~~G~~ie~~~~~~a~GSGS~ya~g~ld~~y--k~~~ms 143 (171)
T cd01913 76 VELAKDWR-TD----RYLRRLEAMLIVADK-----EHTLLISGNGDVIEPDDGIAAIGSGGNYALAAARALL--DHTDLS 143 (171)
T ss_pred HHHHHHHH-hc----cCcCceEEEEEEeCC-----CcEEEECCCCCEeccCCCeEEEeCCHHHHHHHHHHhh--ccCCCC
Confidence 44433332 11 234655 66666544 3899999999999984 9999999999999999996 67 499
Q ss_pred HHHHHHHHHHHHHHhhhccCCCC-cEEEEE
Q 025892 191 YEETVQTAVSALQSVLQEDFKAT-EIEVGV 219 (246)
Q Consensus 191 ~~ea~~l~~~al~~~~~~d~~~~-~iei~i 219 (246)
+.++|.+|++.+.+||..++ +|++-.
T Consensus 144 ---~~~la~~Av~~A~~rd~~tg~~i~~~~ 170 (171)
T cd01913 144 ---AEEIARKALKIAADICIYTNHNITVEE 170 (171)
T ss_pred ---HHHHHHHHHHHHHhhCcccCCCEEEEe
Confidence 66999999999999999876 787653
No 46
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=99.97 E-value=1.8e-30 Score=207.82 Aligned_cols=165 Identities=16% Similarity=0.143 Sum_probs=137.5
Q ss_pred ceEEEEEcCCeEEEEEeccCC-CcccccCCceeeEEe-cCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Q 025892 37 ITSIGVRGKDSVCVVTQKKVP-DKLLDQTCVTHLFPI-TKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVL 114 (246)
Q Consensus 37 ~tvigi~~~dgVvlaad~~~~-~~l~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 114 (246)
+|+|||+++||||||+|+|.+ +.++.+++.+||++| ++|++|+++|..+|++.|.++++.+++.|+++. .+.+
T Consensus 1 tTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~Ki~~i~~d~i~~~~aG~~aD~q~l~~~~~~~~~~y~~~~-----~~~~ 75 (171)
T TIGR03692 1 TTILAVRRNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEYQGNL-----TRAA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeceEEEcCCCCeEEEeCCCCEEEEecchHHHHHHHHHHHHHHHHHccCch-----HHHH
Confidence 599999999999999999999 889999999999999 599999999999999999999999999987643 3556
Q ss_pred HHHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCceeeee--eEEEecCChHHHHHHHHhhccCCCCCCHH
Q 025892 115 SRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGH--KATSAGLKEQEAINFLEKKMKNDPAFSYE 192 (246)
Q Consensus 115 a~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~--~~~a~G~g~~~~~~~Le~~~~~~~~~s~~ 192 (246)
++.+.... .| ...+.+.+.++++|+ ++||.+||.|.+.++ ++.++|||+++++++||.+|+ +++|+
T Consensus 76 a~l~~~~~-~~---~~~~~l~a~~iv~~~-----~~ly~i~~~G~~ie~~~~~~a~GSGS~~a~g~ld~~y~-~~~~s-- 143 (171)
T TIGR03692 76 VELAKDWR-TD---RYLRRLEAMLIVADK-----ETSLLISGTGDVIEPEDGIAAIGSGGNYALAAARALLR-NTDLS-- 143 (171)
T ss_pred HHHHHHHh-hc---ccccccEEEEEEEcC-----CCEEEEcCCCcEeccCCCeEEEeCCHHHHHHHHHHhhh-cCCCC--
Confidence 66655531 11 112234466666544 389999999999997 599999999999999999974 46777
Q ss_pred HHHHHHHHHHHHhhhccCCCC-cEEEEE
Q 025892 193 ETVQTAVSALQSVLQEDFKAT-EIEVGV 219 (246)
Q Consensus 193 ea~~l~~~al~~~~~~d~~~~-~iei~i 219 (246)
|++++++|++.+.+||..++ +|++-.
T Consensus 144 -a~~la~~Av~~A~~rd~~sg~~i~v~~ 170 (171)
T TIGR03692 144 -AEEIAREALKIAADICIYTNHNITIEE 170 (171)
T ss_pred -HHHHHHHHHHHHHhhCccCCCCEEEEe
Confidence 99999999999999999876 787753
No 47
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=99.97 E-value=3.5e-29 Score=198.59 Aligned_cols=161 Identities=34% Similarity=0.494 Sum_probs=151.9
Q ss_pred ceEEEEEcCCeEEEEEeccCCCcccc-cCCceeeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q 025892 37 ITSIGVRGKDSVCVVTQKKVPDKLLD-QTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLS 115 (246)
Q Consensus 37 ~tvigi~~~dgVvlaad~~~~~~l~~-~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 115 (246)
+|+||++++||||+|+|++.+..+.. .....||+.++++++++++|+.+|++.+.++++.+++.|++.++.++++..++
T Consensus 1 ~t~i~i~~~~gvila~d~~~~~~~~~~~~~~~ki~~~~~~~~~~~sG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
T cd01901 1 STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLREALQLYRLRYGEPISVVALA 80 (164)
T ss_pred CcEEEEEeCCEEEEEEecccCccCeecCCCcceEEEecCCeEEEEecChHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 58999999999999999999855444 67889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCceeeee-eEEEecCChHHHHHHHHhhccCCCCCCHHHH
Q 025892 116 RWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGH-KATSAGLKEQEAINFLEKKMKNDPAFSYEET 194 (246)
Q Consensus 116 ~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~-~~~a~G~g~~~~~~~Le~~~~~~~~~s~~ea 194 (246)
+.+++.++.+++ .||+++++|+||+|+ ++|+||.+||.|++.++ .++++|+++..+.++|++.| +++|+.+|+
T Consensus 81 ~~~~~~~~~~~~---~~p~~~~~iiag~~~-~~~~l~~id~~g~~~~~~~~~~~G~~~~~~~~~l~~~~--~~~~~~~~~ 154 (164)
T cd01901 81 KELAKLLQVYTQ---GRPFGVNLIVAGVDE-GGGNLYYIDPSGPVIENPGAVATGSRSQRAKSLLEKLY--KPDMTLEEA 154 (164)
T ss_pred HHHHHHHHHhcC---CCCcceEEEEEEEcC-CCCEEEEECCCcCEeecCcEEEECCCCHHHHHHHHHHh--cCCCCHHHH
Confidence 999999998876 789999999999997 88999999999999999 99999999999999999985 678999999
Q ss_pred HHHHHHHHH
Q 025892 195 VQTAVSALQ 203 (246)
Q Consensus 195 ~~l~~~al~ 203 (246)
++++.+||.
T Consensus 155 ~~~~~~~l~ 163 (164)
T cd01901 155 VELALKALK 163 (164)
T ss_pred HHHHHHHHh
Confidence 999999986
No 48
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=99.54 E-value=2.9e-15 Score=78.74 Aligned_cols=23 Identities=83% Similarity=1.328 Sum_probs=22.2
Q ss_pred CccccceeCCCCcchhhhhHHHH
Q 025892 9 YDRHITIFSPEGRLFQVEYAFKA 31 (246)
Q Consensus 9 yd~~~t~fsp~Gri~Q~eya~~a 31 (246)
||+++|+|||+|||+|||||.||
T Consensus 1 YD~~~t~FSp~Grl~QVEYA~~A 23 (23)
T PF10584_consen 1 YDRSITTFSPDGRLFQVEYAMKA 23 (23)
T ss_dssp TSSSTTSBBTTSSBHHHHHHHHH
T ss_pred CCCCceeECCCCeEEeeEeeecC
Confidence 89999999999999999999987
No 49
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=2.2e-13 Score=105.65 Aligned_cols=169 Identities=17% Similarity=0.172 Sum_probs=126.0
Q ss_pred cCceEEEEEcCCeEEEEEeccCC-CcccccCCceeeEEecC-cEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHH
Q 025892 35 TAITSIGVRGKDSVCVVTQKKVP-DKLLDQTCVTHLFPITK-YLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVD 112 (246)
Q Consensus 35 ~G~tvigi~~~dgVvlaad~~~~-~~l~~~~~~~Ki~~i~~-~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~ 112 (246)
++||+++++-++-|+||+|.+.+ +..+...+..|+.+|.. +++.+|+|.++|++.|.+.+..+++.|. |. .-
T Consensus 3 h~TTiv~vr~~gkv~iagDGQVtlG~tvmK~narKvRkl~~gkvlaGFAGstADaftLfe~fe~kle~~~---g~---L~ 76 (178)
T COG5405 3 HMTTIVAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEQYQ---GD---LF 76 (178)
T ss_pred eeEEEEEEeeCCeEEEecCceEeecceeeeccHHHHHHHcCCcEEEEecccchhHHHHHHHHHHHHHHcc---Cc---HH
Confidence 47999999999999999999999 88888888888888776 8999999999999999999999998874 21 11
Q ss_pred HHHHHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCceeeee--eEEEecCChHHHHHHHHhhccCCCCCC
Q 025892 113 VLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGH--KATSAGLKEQEAINFLEKKMKNDPAFS 190 (246)
Q Consensus 113 ~la~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~--~~~a~G~g~~~~~~~Le~~~~~~~~~s 190 (246)
..+..++.- +...+.+|.+-+-++|+-- -+++-+...|...+. ..+|||||..+++......+. .+++|
T Consensus 77 raavelaKd---wr~Dk~lr~LEAmllVad~-----~~il~isG~gdV~epe~~~~aIGSGgnyAl~AarAl~~-~~~ls 147 (178)
T COG5405 77 RAAVELAKD---WRTDKYLRKLEAMLLVADK-----THILIITGNGDVIEPEDDIIAIGSGGNYALSAARALME-NTELS 147 (178)
T ss_pred HHHHHHHHh---hhhhhHHHHHhhheeEeCC-----CcEEEEecCcceecCCCCeEEEcCCchHHHHHHHHHHh-ccCCC
Confidence 122222222 2222335667788888633 348888888988865 589999999999999988874 55665
Q ss_pred HHHHHHHHHHHHHHhhhccCCCC-cEEEEEEE
Q 025892 191 YEETVQTAVSALQSVLQEDFKAT-EIEVGVVR 221 (246)
Q Consensus 191 ~~ea~~l~~~al~~~~~~d~~~~-~iei~iv~ 221 (246)
|.++++++|..+.+-+++++ +|.|..++
T Consensus 148 ---A~eIa~~sl~iA~eiciyTN~ni~ve~l~ 176 (178)
T COG5405 148 ---AREIAEKSLKIAGDICIYTNHNIVVEELR 176 (178)
T ss_pred ---HHHHHHHHHhhhheEEEecCCcEEEEEee
Confidence 66788889988765444443 56655443
No 50
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=4.2e-10 Score=90.59 Aligned_cols=185 Identities=14% Similarity=0.145 Sum_probs=139.9
Q ss_pred ceEEEEEcCCeEEEEEeccCCCcccccCCceeeEEec---Cc-EEEEEecchHHHHHHHHHHHHHHHHHH-HHcCCCCCH
Q 025892 37 ITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPIT---KY-LGLLATGNTADARSLVHQARNEAAEYR-FKFGYEMPV 111 (246)
Q Consensus 37 ~tvigi~~~dgVvlaad~~~~~~l~~~~~~~Ki~~i~---~~-i~~~~sG~~~D~~~l~~~~~~~~~~~~-~~~~~~~~~ 111 (246)
+-|||++-..|.|+++|+|.+-.+-.-...+|+|... ++ ++++.+|+.+=.|.+.+.+.+..+.-. -..-+-++.
T Consensus 2 TYCv~l~l~~GlVf~sDsRTNAGvD~istfkKl~~~~~pGdRvlvl~taGNLA~tQaV~~ll~e~~~~d~~~~L~n~~sm 81 (255)
T COG3484 2 TYCVGLILDFGLVFGSDSRTNAGVDYISTFKKLFVFELPGDRVLVLCTAGNLAITQAVLHLLDERIQRDDGDSLLNIPSM 81 (255)
T ss_pred ceEEEEEeccceEEecccccccCchHHHHHHHHhhccCCCceEEEEEecCccHHHHHHHHHHHHHhhccchhhhhcchhH
Confidence 5799999999999999999873332224556776554 33 567789999999999999987775211 111233456
Q ss_pred HHHHHHHHHHhhhhhccCC------CCCccceeEEEEEeCCCCcEEEEEcCCceeeee----eEEEecCChHHHHHHHHh
Q 025892 112 DVLSRWIADKSQVYTQHAY------MRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGH----KATSAGLKEQEAINFLEK 181 (246)
Q Consensus 112 ~~la~~l~~~~~~~t~~~~------~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~----~~~a~G~g~~~~~~~Le~ 181 (246)
-..+..++....+-..+.+ .--|.|++|+||--..+-|.||.+-|.|++.+. ++.-+|.. .+-+++|++
T Consensus 82 ~eattlvgetvrEv~~rds~~leka~~dfn~sfllGGQI~G~pp~Ly~IYpqGNFIqaT~etpf~QiGEt-KYGKPildR 160 (255)
T COG3484 82 YEATTLVGETVREVQARDSPALEKAGIDFNCSFLLGGQIKGEPPRLYLIYPQGNFIQATPETPFLQIGET-KYGKPILDR 160 (255)
T ss_pred HHHHHHHHHHHHHHHhccCchhhccCcceeEEEEEcceecCCCceeEEEccCCCeeecCCCCceeEcccc-ccCchhhhh
Confidence 6677777777755432211 134899999999976344899999999999864 68888864 367899999
Q ss_pred hccCCCCCCHHHHHHHHHHHHHHhhhccCCCC-cEEEEEEEeCC
Q 025892 182 KMKNDPAFSYEETVQTAVSALQSVLQEDFKAT-EIEVGVVRSDD 224 (246)
Q Consensus 182 ~~~~~~~~s~~ea~~l~~~al~~~~~~d~~~~-~iei~iv~~~~ 224 (246)
.+ .-+++++|+.++++-++...++.+++.+ .+++-++.++.
T Consensus 161 ~i--~~~~pLeea~kcaLvS~DSTlkSNiSVGlPldLl~~e~ds 202 (255)
T COG3484 161 TI--TYDTPLEEAAKCALVSFDSTLKSNISVGLPLDLLVYEADS 202 (255)
T ss_pred hh--hccCCHHHHhhheEEecchhhhccccccCCceeEEEeccc
Confidence 86 5679999999999999999999999988 79998888774
No 51
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. They do show distant similarity to NTPases and to nucleic acid binding enzymes.
Probab=96.66 E-value=0.037 Score=44.98 Aligned_cols=152 Identities=17% Similarity=0.221 Sum_probs=89.6
Q ss_pred ceEEEEEcCCeEEEEEeccCCCcccccCCceeeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHH
Q 025892 37 ITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLSR 116 (246)
Q Consensus 37 ~tvigi~~~dgVvlaad~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~ 116 (246)
+.+||.-+++|.|||.|+|. ++|-|.-.....|.+.| | .|+=-+-+.|.+
T Consensus 2 SLII~y~GknGaViaGDkR~---------------------I~F~G~~~~re~LEeeL------Y---sG~IktdeEL~k 51 (194)
T PF09894_consen 2 SLIIAYYGKNGAVIAGDKRN---------------------IAFRGDEEKREKLEEEL------Y---SGKIKTDEELLK 51 (194)
T ss_pred eEEEEEecCCCcEEecccee---------------------eeecCCHHHHHHHHHHH------h---CCccCCHHHHHH
Confidence 57999999999999999984 46777766666665544 2 222223344443
Q ss_pred HHHH---HhhhhhccCCCCCccceeEEE------EEeCCCCcEEEEE-------cCCceeeeeeEEEecCCh--------
Q 025892 117 WIAD---KSQVYTQHAYMRPLGVVAMVL------GIDEEKGPQLYKC-------DPAGHFFGHKATSAGLKE-------- 172 (246)
Q Consensus 117 ~l~~---~~~~~t~~~~~rP~~v~~iv~------G~D~~~gp~Ly~i-------d~~G~~~~~~~~a~G~g~-------- 172 (246)
.... .++.--.+...+-.+- +++| |.|. ..-.+|-+ |-.|.-.. -...|.++
T Consensus 52 kA~Elgv~i~I~D~r~KV~~~~~-vlvGEV~s~~g~~s-kRRRiY~t~g~~~Ivei~~~~i~--~~~~g~~sgiIVfGNk 127 (194)
T PF09894_consen 52 KAEELGVKIKITDDREKVRKIGD-VLVGEVTSISGKDS-KRRRIYATKGKYAIVEIENDEIT--NKSRGEGSGIIVFGNK 127 (194)
T ss_pred HHHHcCCEEEEecCchheEEeCC-EEEEEEEEEcCccc-eeeEEEecCCCEEEEEecCCeEE--EEecCCceeEEEECCH
Confidence 3222 1111000111222333 3333 2332 33456653 22333222 23334443
Q ss_pred ---HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCC-CCcEEEEEEEeCC
Q 025892 173 ---QEAINFLEKKMKNDPAFSYEETVQTAVSALQSVLQEDFK-ATEIEVGVVRSDD 224 (246)
Q Consensus 173 ---~~~~~~Le~~~~~~~~~s~~ea~~l~~~al~~~~~~d~~-~~~iei~iv~~~~ 224 (246)
+.+...|.++| .+.|+++++.++..++|..+....++ +..+++...++.-
T Consensus 128 ~~K~ia~~~lkk~~--~~k~~l~~i~~i~~~i~~~~a~~tpsvS~~~d~~~~~~~~ 181 (194)
T PF09894_consen 128 FTKEIANKELKKYW--KPKMSLKDIENIFEKIMEEVASKTPSVSKEYDIYITTKKE 181 (194)
T ss_pred HHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHHHhhcCCCccCcEEEEEecccc
Confidence 56677777875 58999999999999999999766665 4579998877653
No 52
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=95.33 E-value=1.5 Score=37.07 Aligned_cols=171 Identities=17% Similarity=0.181 Sum_probs=102.6
Q ss_pred ceEEEEEcCCeEEEEEeccCCCcccccCCceeeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHH
Q 025892 37 ITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLSR 116 (246)
Q Consensus 37 ~tvigi~~~dgVvlaad~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~ 116 (246)
+.+|+.-++||.|+|.|+|. +++-|.-.|.+.|.+.+ | .|+--+-+.|++
T Consensus 2 tLviay~gknGaviaGDrR~---------------------i~frgdee~re~lEekL------Y---sGeIkteEEL~r 51 (293)
T COG4079 2 TLVIAYIGKNGAVIAGDRRE---------------------ITFRGDEEDREKLEEKL------Y---SGEIKTEEELAR 51 (293)
T ss_pred eEEEEEecCCCcEEeccceE---------------------EEEecChhHHHHHHHHh------h---cCccccHHHHHH
Confidence 57899999999999999984 45667777777666644 2 344445566776
Q ss_pred HHHHHhhhhhc---cCCCCCccceeEEEEEeCC-----CCcEEEEEcCCceeee-----eeEEEecC-------C----h
Q 025892 117 WIADKSQVYTQ---HAYMRPLGVVAMVLGIDEE-----KGPQLYKCDPAGHFFG-----HKATSAGL-------K----E 172 (246)
Q Consensus 117 ~l~~~~~~~t~---~~~~rP~~v~~iv~G~D~~-----~gp~Ly~id~~G~~~~-----~~~~a~G~-------g----~ 172 (246)
....+--+++- +...|-..-+.++|-.... ..-.+|.+--.=.+.+ ......|. | -
T Consensus 52 ~aeel~Vki~vtDdr~KVrk~~d~VvvGEV~s~~~~~vkRRRvYAT~Ga~aIvel~gs~vts~~~g~g~aiIv~Gnk~~K 131 (293)
T COG4079 52 KAEELGVKITVTDDRNKVRKRNDGVVVGEVSSVERGIVKRRRVYATAGAYAIVELRGSEVTSTSQGKGSAIIVFGNKFTK 131 (293)
T ss_pred HHHHcCCEEEEEcchHhhhcccCcEEEEEeecccccceeeeEEeecCCceEEEEecCCeeEeeecCCCceEEEECcHHHH
Confidence 65554322221 1122344444555544331 1234555321111111 11222333 2 2
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCC-CCcEEEEEEEeCCceEEEcCHHHHHHHH
Q 025892 173 QEAINFLEKKMKNDPAFSYEETVQTAVSALQSVLQEDFK-ATEIEVGVVRSDDRVFRVLSSEEIDEHL 239 (246)
Q Consensus 173 ~~~~~~Le~~~~~~~~~s~~ea~~l~~~al~~~~~~d~~-~~~iei~iv~~~~~~~~~l~~~ei~~~~ 239 (246)
+.+..+|.++| .+.++++++.+....+|..+..-.++ +..++++.+.++-..+.+|..++|+.+.
T Consensus 132 e~aneflk~~l--~~k~~lqd~~dal~elfe~vss~tpsVskeydiy~vs~~~d~~~rl~kkDie~L~ 197 (293)
T COG4079 132 EVANEFLKDNL--TKKSKLQDAVDALMELFETVSSKTPSVSKEYDIYQVSSNVDPVLRLVKKDIETLR 197 (293)
T ss_pred HHHHHHHHhhc--cCCCCHHHHHHHHHHHHHHhhcCCCcccceeEEEEecCCcCHHHHHHHHHHHHHH
Confidence 44566788775 67899999999999999887755454 4579999988775446666667666553
No 53
>KOG3361 consensus Iron binding protein involved in Fe-S cluster formation [Energy production and conversion]
Probab=66.17 E-value=13 Score=28.62 Aligned_cols=44 Identities=18% Similarity=0.138 Sum_probs=37.5
Q ss_pred EEEcCCceeeeeeEEEecCChHHHHHHHHhhccCCCCCCHHHHHHH
Q 025892 152 YKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFSYEETVQT 197 (246)
Q Consensus 152 y~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~s~~ea~~l 197 (246)
..+|-+|.+...++-..|.|+..+..-+-..| -.++++||+..+
T Consensus 71 Ikvd~~g~I~dakFKTFGCGSAIASSS~aTew--vkgkt~dea~kI 114 (157)
T KOG3361|consen 71 IKVDDSGVIEDAKFKTFGCGSAIASSSLATEW--VKGKTLDEALKI 114 (157)
T ss_pred EEECCCCcEEEeeeeecccchHhhhhHHHHHH--HccccHHHHHhc
Confidence 45788999999999999999999988888775 567899998764
No 54
>PF00178 Ets: Ets-domain; InterPro: IPR000418 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription []. The ets oncogene is such a factor, possessing a region of 85-90 amino acids known as the ETS (erythroblast transformation specific) domain [, , ]. This domain is rich in positively-charged and aromatic residues, and binds to purine-rich segments of DNA. The ETS domain has been identified in other transcription factors such as PU.1, human erg, human elf-1, human elk-1, GA binding protein, and a number of others [, , ]. It is generally localized at the C terminus of the protein, with the exception of ELF-1, ELK-1, ELK-3, ELK-4 and ERF where it is found at the N terminus. NMR-analysis of the structure of the Ets domains revealed that it contains three alpha-helixes (1-3) and four-stranded beta-sheets (1-4) arranged in the order alpha1-beta1-beta2-alpha2-alpha3-beta3-beta4 forming a winged helix-turn-helix (wHTH) topology []. The third alpha-helix is responsive to contact to the major groove of the DNA. Different members of the Ets family proteins display distinct DNA binding specificities. The Ets domains and the flanking amino acid sequences of the proteins influence the binding affinity, and the alteration of a single amino acid in the Ets domain can change its DNA binding specificities. Avian leukemia virus E26 is a replication defective retrovirus that induces a mixed erythroid/myeloid leukemia in chickens.This virus carries two distinct oncogenes: v-myb and v-ets. The ets portion of this oncogene is required for the induction of erythroblastosis. V-ets and c-ets-1, its cellular progenitor, have been shown [] to be nuclear DNA-binding proteins. Ets-1 differs slightly from v-ets at its carboxy-terminal region. In most species where it has been sequenced, c-ets-1 exists in various isoforms generated by alternative splicing and differential phosphorylation.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1DUX_F 4AVP_B 1HBX_G 1BC7_C 1K6O_A 1BC8_C 1PUE_E 1FLI_A 2DAO_A 1WWX_A ....
Probab=60.04 E-value=22 Score=25.07 Aligned_cols=27 Identities=7% Similarity=0.164 Sum_probs=22.3
Q ss_pred EEEEEeCCceEEEcCHHHHHHHHHHhh
Q 025892 217 VGVVRSDDRVFRVLSSEEIDEHLTAIS 243 (246)
Q Consensus 217 i~iv~~~~~~~~~l~~~ei~~~~~~i~ 243 (246)
|.+.++++..|+.++|++|.+++..--
T Consensus 21 I~Wt~~~~~eFki~d~~~vA~lWG~~k 47 (85)
T PF00178_consen 21 IAWTGKRGGEFKIVDPEAVARLWGKHK 47 (85)
T ss_dssp EEEEETSTTEEEESSHHHHHHHHHHHT
T ss_pred eEeeccCCCeEEecCHHHHHHHHHHHc
Confidence 667886777899999999999987543
No 55
>smart00413 ETS erythroblast transformation specific domain. variation of the helix-turn-helix motif
Probab=59.25 E-value=17 Score=25.86 Aligned_cols=27 Identities=15% Similarity=0.206 Sum_probs=22.3
Q ss_pred EEEEEEeCCceEEEcCHHHHHHHHHHh
Q 025892 216 EVGVVRSDDRVFRVLSSEEIDEHLTAI 242 (246)
Q Consensus 216 ei~iv~~~~~~~~~l~~~ei~~~~~~i 242 (246)
-|.+.+++++.|+.++|++|.+.++.-
T Consensus 20 ~I~W~~k~~g~Fkl~~~~~vA~lWG~~ 46 (87)
T smart00413 20 IIRWTDRDGGEFKLVDPEEVARLWGQR 46 (87)
T ss_pred eEEeeCCCCCEEEecCHHHHHHHHhhh
Confidence 467888766679999999999998853
No 56
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=56.40 E-value=14 Score=24.22 Aligned_cols=32 Identities=19% Similarity=0.283 Sum_probs=27.4
Q ss_pred ceeCC-CCcchhhhhHHHHHhccCceEEEEEcCC
Q 025892 14 TIFSP-EGRLFQVEYAFKAVKATAITSIGVRGKD 46 (246)
Q Consensus 14 t~fsp-~Gri~Q~eya~~av~~~G~tvigi~~~d 46 (246)
|.||+ +|.+.--+|...+..+ |-..+||.=.+
T Consensus 6 t~~S~~~~~~~~~~~~~~a~~~-g~~~v~iTDh~ 38 (67)
T smart00481 6 SDYSLLDGALSPEELVKRAKEL-GLKAIAITDHG 38 (67)
T ss_pred cCCccccccCCHHHHHHHHHHc-CCCEEEEeeCC
Confidence 67888 9999989999999884 99999987665
No 57
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=49.51 E-value=24 Score=28.40 Aligned_cols=37 Identities=30% Similarity=0.285 Sum_probs=27.8
Q ss_pred eeCCCCcchhhhhHHHHHhccCceEEEEEcCCeEEEE
Q 025892 15 IFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVV 51 (246)
Q Consensus 15 ~fsp~Gri~Q~eya~~av~~~G~tvigi~~~dgVvla 51 (246)
-+||.|.---|--|.++.+..|.++||+.++||=-++
T Consensus 115 gISTSGNS~nVl~Ai~~Ak~~gm~vI~ltG~~GG~~~ 151 (176)
T COG0279 115 GISTSGNSKNVLKAIEAAKEKGMTVIALTGKDGGKLA 151 (176)
T ss_pred EEeCCCCCHHHHHHHHHHHHcCCEEEEEecCCCcccc
Confidence 4677777765555655555579999999999997765
No 58
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=48.57 E-value=39 Score=21.11 Aligned_cols=33 Identities=21% Similarity=0.172 Sum_probs=27.5
Q ss_pred EEEEcCCceeeeeeEEEecCChHHHHHHHHhhc
Q 025892 151 LYKCDPAGHFFGHKATSAGLKEQEAINFLEKKM 183 (246)
Q Consensus 151 Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~ 183 (246)
-|.|+|+|.+...--...|.+...+...||+..
T Consensus 2 ~~~I~~dG~V~~~v~G~~G~~C~~~t~~lE~~L 34 (48)
T PF11211_consen 2 EFTIYPDGRVEEEVEGFKGSSCLEATAALEEAL 34 (48)
T ss_pred EEEECCCcEEEEEEEeccChhHHHHHHHHHHHh
Confidence 367899999988777778999988888888765
No 59
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=44.57 E-value=15 Score=22.59 Aligned_cols=34 Identities=26% Similarity=0.409 Sum_probs=24.6
Q ss_pred EecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHH
Q 025892 167 SAGLKEQEAINFLEKKMKNDPAFSYEETVQTAVSA 201 (246)
Q Consensus 167 a~G~g~~~~~~~Le~~~~~~~~~s~~ea~~l~~~a 201 (246)
+.|+....+...+.+... .++++.++.++.+++.
T Consensus 12 ~LGy~~~e~~~av~~~~~-~~~~~~e~~ik~aLk~ 45 (47)
T PF07499_consen 12 SLGYSKAEAQKAVSKLLE-KPGMDVEELIKQALKL 45 (47)
T ss_dssp HTTS-HHHHHHHHHHHHH-STTS-HHHHHHHHHCC
T ss_pred HcCCCHHHHHHHHHHhhc-CCCCCHHHHHHHHHhh
Confidence 458888889999988754 6889988888777653
No 60
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=43.56 E-value=1.1e+02 Score=21.60 Aligned_cols=52 Identities=15% Similarity=0.213 Sum_probs=38.0
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEeCCceEEEcCHHHHHHHHHHh
Q 025892 186 DPAFSYEETVQTAVSALQSVLQEDFKATEIEVGVVRSDDRVFRVLSSEEIDEHLTAI 242 (246)
Q Consensus 186 ~~~~s~~ea~~l~~~al~~~~~~d~~~~~iei~iv~~~~~~~~~l~~~ei~~~~~~i 242 (246)
.+.++.++..+.++...+. .....+.|.+++++|.-+..=+.+|+++.++=+
T Consensus 17 d~~~s~e~L~~~v~~~c~~-----~~~q~ft~kw~DEEGDp~tiSS~~EL~EA~rl~ 68 (83)
T cd06404 17 DPSISLEELCNEVRDMCRF-----HNDQPFTLKWIDEEGDPCTISSQMELEEAFRLY 68 (83)
T ss_pred CCCcCHHHHHHHHHHHhCC-----CCCCcEEEEEECCCCCceeecCHHHHHHHHHHH
Confidence 3457777777666655543 222479999999998778899999999987643
No 61
>KOG3806 consensus Predicted transcription factor [Transcription]
Probab=42.66 E-value=33 Score=27.74 Aligned_cols=25 Identities=16% Similarity=0.311 Sum_probs=20.6
Q ss_pred EEEEEeCCceEEEcCHHHHHHHHHH
Q 025892 217 VGVVRSDDRVFRVLSSEEIDEHLTA 241 (246)
Q Consensus 217 i~iv~~~~~~~~~l~~~ei~~~~~~ 241 (246)
|++..+++..|+.++|+||.+.|..
T Consensus 88 I~Wtg~~g~EFkl~dp~eVArlWG~ 112 (177)
T KOG3806|consen 88 IAWTGKDGLEFKLVDPDEVARLWGA 112 (177)
T ss_pred eEEeCCCCceEEecCHHHHHHHHhh
Confidence 5566667768999999999999874
No 62
>PRK08868 flagellar protein FlaG; Provisional
Probab=39.21 E-value=1.8e+02 Score=22.72 Aligned_cols=33 Identities=21% Similarity=0.295 Sum_probs=26.7
Q ss_pred CCcEEEEEEEeCCc-eEEEcCHHHHHHHHHHhhc
Q 025892 212 ATEIEVGVVRSDDR-VFRVLSSEEIDEHLTAISE 244 (246)
Q Consensus 212 ~~~iei~iv~~~~~-~~~~l~~~ei~~~~~~i~~ 244 (246)
++.+-|.|++++.+ -+|.++|||+-++.+.|.+
T Consensus 99 tgr~VVkViD~~T~EVIRQIP~Ee~L~la~~l~e 132 (144)
T PRK08868 99 SGRDVVTIYEASTGDIIRQIPDEEMLEVLRRLAE 132 (144)
T ss_pred CCCEEEEEEECCCCceeeeCCCHHHHHHHHHHHH
Confidence 45688899996643 6999999999999988874
No 63
>PF14804 Jag_N: Jag N-terminus; PDB: 3GKU_B.
Probab=38.82 E-value=37 Score=21.60 Aligned_cols=29 Identities=24% Similarity=0.334 Sum_probs=19.7
Q ss_pred CCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEeC
Q 025892 189 FSYEETVQTAVSALQSVLQEDFKATEIEVGVVRSD 223 (246)
Q Consensus 189 ~s~~ea~~l~~~al~~~~~~d~~~~~iei~iv~~~ 223 (246)
-|++||++.|.+-|..- ...+++-|+.+.
T Consensus 5 kt~eeAi~~A~~~l~~~------~~~~~~eVi~~g 33 (52)
T PF14804_consen 5 KTVEEAIEKALKELGVP------REELEYEVIEEG 33 (52)
T ss_dssp SSHHHHHHHHHHHTT--------GGGEEEEEEE--
T ss_pred CCHHHHHHHHHHHhCCC------hHHEEEEEEEcC
Confidence 48899999888877643 235888888874
No 64
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=32.74 E-value=47 Score=27.31 Aligned_cols=35 Identities=11% Similarity=0.050 Sum_probs=27.8
Q ss_pred CCCCHHHHHHHHHHHhhhhhccCCCCCccceeEEEEEeC
Q 025892 107 YEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDE 145 (246)
Q Consensus 107 ~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~ 145 (246)
.+-+|+.++..|+++++.|.++++.+.+ +|.||.-
T Consensus 43 ~~rtP~~~a~Dl~~~i~~y~~~w~~~~v----vLiGYSF 77 (192)
T PF06057_consen 43 SERTPEQTAADLARIIRHYRARWGRKRV----VLIGYSF 77 (192)
T ss_pred hhCCHHHHHHHHHHHHHHHHHHhCCceE----EEEeecC
Confidence 3557999999999999999988775443 7778854
No 65
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=30.32 E-value=1.7e+02 Score=21.06 Aligned_cols=32 Identities=19% Similarity=0.322 Sum_probs=24.3
Q ss_pred CCcEEEEEEEeCCc-eEEEcCHHHHHHHHHHhh
Q 025892 212 ATEIEVGVVRSDDR-VFRVLSSEEIDEHLTAIS 243 (246)
Q Consensus 212 ~~~iei~iv~~~~~-~~~~l~~~ei~~~~~~i~ 243 (246)
++.+-|.+++++.+ -.|.++|+++-++.+.|.
T Consensus 65 ~~~~vVkViD~~T~eVIRqIP~Ee~l~l~~~l~ 97 (107)
T PF03646_consen 65 SGRVVVKVIDKETGEVIRQIPPEELLDLAKRLR 97 (107)
T ss_dssp TTEEEEEEEETTT-SEEEEE-HHHHHHHHHHHH
T ss_pred CCcEEEEEEECCCCcEEEeCCcHHHHHHHHHHH
Confidence 45688999997644 579999999988887765
No 66
>PF03928 DUF336: Domain of unknown function (DUF336); InterPro: IPR005624 This entry contains uncharacterised proteins, including GlcG P45504 from SWISSPROT. The alignment contains many conserved motifs that are suggestive of cofactor binding and enzymatic activity.; PDB: 2A2L_D 3FPW_A 3FPV_E.
Probab=29.80 E-value=63 Score=24.43 Aligned_cols=36 Identities=14% Similarity=0.357 Sum_probs=25.8
Q ss_pred CCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEeCCc
Q 025892 187 PAFSYEETVQTAVSALQSVLQEDFKATEIEVGVVRSDDR 225 (246)
Q Consensus 187 ~~~s~~ea~~l~~~al~~~~~~d~~~~~iei~iv~~~~~ 225 (246)
|.+++++|.+++..++..+.++.. ++-|+||+..+-
T Consensus 1 p~l~~~~A~~l~~~a~~~a~~~g~---~v~iaVvd~~G~ 36 (132)
T PF03928_consen 1 PSLTLEDAWKLGDAAVEEARERGL---PVSIAVVDAGGH 36 (132)
T ss_dssp EEE-HHHHHHHHHHHHHHHHHTT------EEEEEETTS-
T ss_pred CCcCHHHHHHHHHHHHHHHHHhCC---CeEEEEEECCCC
Confidence 347899999999999999886543 377888888764
No 67
>PRK09732 hypothetical protein; Provisional
Probab=28.23 E-value=1.5e+02 Score=22.77 Aligned_cols=37 Identities=5% Similarity=0.168 Sum_probs=30.0
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEeCCc
Q 025892 186 DPAFSYEETVQTAVSALQSVLQEDFKATEIEVGVVRSDDR 225 (246)
Q Consensus 186 ~~~~s~~ea~~l~~~al~~~~~~d~~~~~iei~iv~~~~~ 225 (246)
.+.||++.|.+++..++..+.+... .+-|+||+..|-
T Consensus 4 ~~~Ltl~~A~~~~~aA~~~A~~~g~---~v~iaVvD~~G~ 40 (134)
T PRK09732 4 KVILSQQMASAIIAAGQEEAQKNNW---SVSIAVADDGGH 40 (134)
T ss_pred cccCCHHHHHHHHHHHHHHHHHhCC---CEEEEEEcCCCC
Confidence 4569999999999999998876432 689999998873
No 68
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=27.91 E-value=52 Score=28.42 Aligned_cols=57 Identities=16% Similarity=0.161 Sum_probs=38.4
Q ss_pred cceeEE--EEEeCCCCcEEEEEcCCceeeee---eEEEecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHH
Q 025892 135 GVVAMV--LGIDEEKGPQLYKCDPAGHFFGH---KATSAGLKEQEAINFLEKKMKNDPAFSYEETVQTAVSA 201 (246)
Q Consensus 135 ~v~~iv--~G~D~~~gp~Ly~id~~G~~~~~---~~~a~G~g~~~~~~~Le~~~~~~~~~s~~ea~~l~~~a 201 (246)
.+..++ ||-|. .+..+|..|..... +.||.|.|+ +||..- ..-+++++|.-+++.++
T Consensus 97 ~~~tIiDIGGQD~----K~I~~~~~G~v~~f~MNdkCAAGTG~-----FLe~~A-~~L~i~leel~~~a~~~ 158 (262)
T TIGR02261 97 EARAVLDIGALHG----RAIRMDERGKVEAYKMTSQCASGSGQ-----FLENIA-RYLGIAQDEIGSLSQQA 158 (262)
T ss_pred CCCEEEEeCCCce----EEEEEcCCCcEeeEEecCcccccccH-----HHHHHH-HHhCCCHHHHHHHHhcC
Confidence 345554 67765 37889999998865 588999995 555432 13457888777776555
No 69
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=27.66 E-value=59 Score=25.04 Aligned_cols=31 Identities=23% Similarity=0.347 Sum_probs=25.6
Q ss_pred ceeC-CCCcchhhhhHHHHHhccCceEEEEEcC
Q 025892 14 TIFS-PEGRLFQVEYAFKAVKATAITSIGVRGK 45 (246)
Q Consensus 14 t~fs-p~Gri~Q~eya~~av~~~G~tvigi~~~ 45 (246)
|.|| ++|...--||...|.+ .|-+.|||.=.
T Consensus 7 T~~s~~dg~~~~~e~v~~A~~-~Gl~~i~iTDH 38 (175)
T PF02811_consen 7 TKYSILDGKDSPEEYVEQAKE-KGLDAIAITDH 38 (175)
T ss_dssp -TTTSSTSSSSHHHHHHHHHH-TTESEEEEEEE
T ss_pred ccCcchhhcCCHHHHHHHHHH-cCCCEEEEcCC
Confidence 5688 8999988999999998 59999988654
No 70
>PHA01810 hypothetical protein
Probab=27.66 E-value=71 Score=21.96 Aligned_cols=38 Identities=18% Similarity=0.447 Sum_probs=30.0
Q ss_pred cCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhh
Q 025892 169 GLKEQEAINFLEKKMKNDPAFSYEETVQTAVSALQSVL 206 (246)
Q Consensus 169 G~g~~~~~~~Le~~~~~~~~~s~~ea~~l~~~al~~~~ 206 (246)
|.+.........+.+.|+|.-+.+.|+.++..|-....
T Consensus 12 gqaytemlqlfnkliqwnpaytfdnainlvsacqqlll 49 (100)
T PHA01810 12 GQAYTEMLQLFNKLIQWNPAYTFDNAINLVSACQQLLL 49 (100)
T ss_pred hHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHHHHH
Confidence 55556677777888889999999999999988865544
No 71
>PF08140 Cuticle_1: Crustacean cuticle protein repeat; InterPro: IPR012539 This family consists of the cuticle proteins from the Cancer pagurus (Rock crab) and the Homarus americanus (American lobster). These proteins are isolated from the calcified regions of the crustacean and they contain two copies of an 18 residue sequence motif, which thus far has been found only in crustacean calcified exoskeletons [].; GO: 0042302 structural constituent of cuticle
Probab=27.51 E-value=87 Score=18.82 Aligned_cols=29 Identities=21% Similarity=0.406 Sum_probs=21.2
Q ss_pred eeCCCCcchhhhhHHHHHhccCceEEEEEcCCeEEEE
Q 025892 15 IFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVV 51 (246)
Q Consensus 15 ~fsp~Gri~Q~eya~~av~~~G~tvigi~~~dgVvla 51 (246)
+-.|||+..|+ . .|-..|.+.+..|+|+.
T Consensus 5 ii~~dG~~~q~-------~-~~~a~ivl~GpSG~v~s 33 (40)
T PF08140_consen 5 IITPDGTNVQF-------P-HGVANIVLIGPSGAVLS 33 (40)
T ss_pred eECCCCCEEEC-------C-cccceEEEECCceEEee
Confidence 45799999998 3 24336777888888874
No 72
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=26.65 E-value=61 Score=32.15 Aligned_cols=43 Identities=23% Similarity=0.522 Sum_probs=33.7
Q ss_pred CccccceeCCCCcch-------hhhhHHHHHhccCceEEEEEcCCeEEEE
Q 025892 9 YDRHITIFSPEGRLF-------QVEYAFKAVKATAITSIGVRGKDSVCVV 51 (246)
Q Consensus 9 yd~~~t~fsp~Gri~-------Q~eya~~av~~~G~tvigi~~~dgVvla 51 (246)
|+..+-+|+|.|.+. .+.+|...-..-|..|+|.+-++-+|-.
T Consensus 384 ~~d~v~VfTP~G~v~~LP~GaT~lDFAY~iHt~iG~~c~gAkVNg~~vpL 433 (702)
T PRK11092 384 FPDEIYVFTPEGRIVELPAGATPVDFAYAVHTDIGHACVGARVDRQPYPL 433 (702)
T ss_pred ccceEEEECCCCCEEeCCCCCchhhhhHhhCchhhceeEEEEECCEECCC
Confidence 556789999999998 5667777766679999999997665544
No 73
>COG3411 Ferredoxin [Energy production and conversion]
Probab=26.46 E-value=1.3e+02 Score=20.13 Aligned_cols=24 Identities=13% Similarity=0.187 Sum_probs=20.0
Q ss_pred EEEeCCceEEEcCHHHHHHHHHHh
Q 025892 219 VVRSDDRVFRVLSSEEIDEHLTAI 242 (246)
Q Consensus 219 iv~~~~~~~~~l~~~ei~~~~~~i 242 (246)
++..++.+.+.++|+.+++++++-
T Consensus 21 ~vYpegvWY~~V~p~~a~rIv~~h 44 (64)
T COG3411 21 VVYPEGVWYTRVDPEDARRIVQSH 44 (64)
T ss_pred EEecCCeeEeccCHHHHHHHHHHH
Confidence 456788889999999999998753
No 74
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.67 E-value=1.6e+02 Score=24.01 Aligned_cols=53 Identities=23% Similarity=0.360 Sum_probs=35.0
Q ss_pred CCHHHHHHHHHHHHHHhhhccCC--------------------------CC-cEEEEEEE---eCCc-eEEEcCHHHHHH
Q 025892 189 FSYEETVQTAVSALQSVLQEDFK--------------------------AT-EIEVGVVR---SDDR-VFRVLSSEEIDE 237 (246)
Q Consensus 189 ~s~~ea~~l~~~al~~~~~~d~~--------------------------~~-~iei~iv~---~~~~-~~~~l~~~ei~~ 237 (246)
-+.+||+++...+.+.+.+-|.+ .. ..++..++ |+|+ .|.+++.+++++
T Consensus 92 kn~~eA~e~m~~vvrAVkd~d~~k~VVAaGYaDa~Rvgsv~Pl~~P~vaa~ag~DvaMvDTaiKDGkslFdfm~~e~l~e 171 (235)
T COG1891 92 KNEEEALEVMKNVVRAVKDFDPSKKVVAAGYADAHRVGSVSPLLLPEVAAEAGADVAMVDTAIKDGKSLFDFMDEEELEE 171 (235)
T ss_pred ccHHHHHHHHHHHHHHHhccCCCceEEeccccchhhccCcCccccHHHHHhcCCCEEEEecccccchhHHhhhcHHHHHH
Confidence 36788888888887766542211 00 23455554 5555 588999999999
Q ss_pred HHHH
Q 025892 238 HLTA 241 (246)
Q Consensus 238 ~~~~ 241 (246)
|+..
T Consensus 172 Fvd~ 175 (235)
T COG1891 172 FVDL 175 (235)
T ss_pred HHHH
Confidence 9874
No 75
>COG4728 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.65 E-value=76 Score=23.29 Aligned_cols=31 Identities=29% Similarity=0.333 Sum_probs=27.1
Q ss_pred eeEEecCcEEEEEecchHHHHHHHHHHHHHH
Q 025892 68 HLFPITKYLGLLATGNTADARSLVHQARNEA 98 (246)
Q Consensus 68 Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~ 98 (246)
-+|+|-+.+++.+.|..+|.-.+.++++...
T Consensus 9 ~~~~i~~~~gl~~v~~~~~~s~~~~k~~~~~ 39 (124)
T COG4728 9 IIFKIKDKLGLTFVSKSADMSIQVEKAERLI 39 (124)
T ss_pred EEEEEhhhcCcEEEEecchhHHHHHHHHHhh
Confidence 4788999999999999999999999887664
No 76
>PF05589 DUF768: Protein of unknown function (DUF768); InterPro: IPR008486 This family consists of several uncharacterised hypothetical proteins from Rhizobium loti (Mesorhizobium loti).
Probab=25.02 E-value=74 Score=21.24 Aligned_cols=41 Identities=5% Similarity=0.023 Sum_probs=27.9
Q ss_pred CChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccC
Q 025892 170 LKEQEAINFLEKKMKNDPAFSYEETVQTAVSALQSVLQEDF 210 (246)
Q Consensus 170 ~g~~~~~~~Le~~~~~~~~~s~~ea~~l~~~al~~~~~~d~ 210 (246)
.|..++..++.++....+.-+.--+.+|+.+|+..+....+
T Consensus 4 r~~~Fl~~WI~e~V~~~~~~d~is~~~La~kl~adA~a~Gi 44 (64)
T PF05589_consen 4 RGIEFLDSWIAENVPDTPKADIISAAELAEKLFADAEAAGI 44 (64)
T ss_pred hHHHHHHHHHHhcCCCccccchhhHHHHHHHHHHHHHHcCC
Confidence 35667788888876444444455568899999988765443
No 77
>PF04539 Sigma70_r3: Sigma-70 region 3; InterPro: IPR007624 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 3 forms a discrete compact three helical domain within the sigma-factor. Region is not normally involved in the recognition of promoter DNA, but in some specific bacterial promoters containing an extended -10 promoter element, residues within region 3 play an important role. Region 3 primarily is involved in binding the core RNA polymerase in the holoenzyme [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1L0O_C 1KU2_B 1RP3_C 1SC5_A 1TTY_A 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P ....
Probab=24.59 E-value=1.4e+02 Score=19.86 Aligned_cols=33 Identities=9% Similarity=0.118 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh
Q 025892 91 VHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQ 123 (246)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~ 123 (246)
.+.+++-........|+.++.+.+|..+.--..
T Consensus 3 l~~i~~a~~~L~~~lgr~Pt~eEiA~~lgis~~ 35 (78)
T PF04539_consen 3 LRKIERARRELEQELGREPTDEEIAEELGISVE 35 (78)
T ss_dssp HHHHHHHHHHHHHHHSS--BHHHHHHHHTS-HH
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHcccHH
Confidence 345555556667788999999999988654443
No 78
>PF10632 He_PIG_assoc: He_PIG associated, NEW1 domain of bacterial glycohydrolase; InterPro: IPR019599 This domain has been named NEW1 but its actual function is not known. It is found on proteins which are bacterial galactosidases []. The domain is associated with IPR008009 from INTERPRO, a putative Ig-containing domain.
Probab=23.85 E-value=1.1e+02 Score=16.94 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=15.9
Q ss_pred eeEEEEEeCCCCcEEEEEcCCce
Q 025892 137 VAMVLGIDEEKGPQLYKCDPAGH 159 (246)
Q Consensus 137 ~~iv~G~D~~~gp~Ly~id~~G~ 159 (246)
+..+.|.-+ +.|+||.+-.+|.
T Consensus 5 ~~~v~G~rP-g~pfl~~IpatG~ 26 (29)
T PF10632_consen 5 SPRVFGARP-GSPFLFTIPATGE 26 (29)
T ss_pred cCcEEcccC-CCcEEEEeeccCc
Confidence 334556655 6799999988885
No 79
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=23.67 E-value=78 Score=27.83 Aligned_cols=56 Identities=16% Similarity=0.144 Sum_probs=36.5
Q ss_pred CccceeEE--EEEeCCCCcEEEEEcCCceeeee---eEEEecCChHHHHHHHHhhccCCCCCCHHHHHHHH
Q 025892 133 PLGVVAMV--LGIDEEKGPQLYKCDPAGHFFGH---KATSAGLKEQEAINFLEKKMKNDPAFSYEETVQTA 198 (246)
Q Consensus 133 P~~v~~iv--~G~D~~~gp~Ly~id~~G~~~~~---~~~a~G~g~~~~~~~Le~~~~~~~~~s~~ea~~l~ 198 (246)
|-.+..++ ||-|. .+..+|..|..... +.||.|+|+ +||..- ..-+++++|.-+++
T Consensus 123 pp~v~tIIDIGGQDs----K~I~~d~~G~v~dF~MNdkCAAGTGr-----FLE~~A-~~Lgi~leel~~~a 183 (293)
T TIGR03192 123 GNAVRTILDMGGQDC----KAIHCDEKGKVTNFLMNDKCAAGTGR-----GMEVIS-DLMQIPIADLGPRS 183 (293)
T ss_pred CCCCCEEEEeCCCce----EEEEEcCCCcEeeeeecCcccccccH-----HHHHHH-HHcCCCHHHHHHHH
Confidence 43455554 77775 37888999987764 588999995 555432 13357777765554
No 80
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=23.03 E-value=2e+02 Score=23.72 Aligned_cols=36 Identities=22% Similarity=0.341 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhhhccCCC-CcEEEEEEEeCCceEEE
Q 025892 193 ETVQTAVSALQSVLQEDFKA-TEIEVGVVRSDDRVFRV 229 (246)
Q Consensus 193 ea~~l~~~al~~~~~~d~~~-~~iei~iv~~~~~~~~~ 229 (246)
|+++..++.|.+....|..+ ..++|+|||-+++ .+.
T Consensus 22 ealN~Glq~m~~~Lkqdp~Ale~v~lsIVTF~~~-a~~ 58 (207)
T COG4245 22 EALNAGLQMMIDTLKQDPYALERVELSIVTFGGP-ARV 58 (207)
T ss_pred HHHHHHHHHHHHHHHhChhhhheeEEEEEEecCc-ceE
Confidence 57788888888888777765 4799999999875 443
No 81
>TIGR03285 methan_mark_14 putative methanogenesis marker protein 14. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=22.74 E-value=2.4e+02 Score=25.82 Aligned_cols=59 Identities=20% Similarity=0.320 Sum_probs=41.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhhc-cCCCCcEEEEEEEeCCceEEEcCHHHHHHHHHHhhc
Q 025892 185 NDPAFSYEETVQTAVSALQSVLQE-DFKATEIEVGVVRSDDRVFRVLSSEEIDEHLTAISE 244 (246)
Q Consensus 185 ~~~~~s~~ea~~l~~~al~~~~~~-d~~~~~iei~iv~~~~~~~~~l~~~ei~~~~~~i~~ 244 (246)
|.-.||.|-.-+++++.|.+..+. .+.-..++. +|+..|...-.=+|+|+.+++..+.+
T Consensus 56 ~g~eLtresV~elV~dtl~e~~k~A~l~i~DL~F-VVRSTGV~Agf~speevg~~I~ALA~ 115 (445)
T TIGR03285 56 WGVELTRESVAELVKDTLKESLKKAGLDIDDLDF-VVRSTGVTAGFASPEEVGEMIKALAD 115 (445)
T ss_pred cCccccHHHHHHHHHHHHHHHHHHcCCChhhccE-EEeccceeeccCCHHHHHHHHHHHHh
Confidence 345688888888888888887754 333334444 56677765556789999999987764
No 82
>PRK07738 flagellar protein FlaG; Provisional
Probab=22.59 E-value=3.4e+02 Score=20.39 Aligned_cols=32 Identities=22% Similarity=0.273 Sum_probs=25.9
Q ss_pred CCcEEEEEEEeCCc-eEEEcCHHHHHHHHHHhh
Q 025892 212 ATEIEVGVVRSDDR-VFRVLSSEEIDEHLTAIS 243 (246)
Q Consensus 212 ~~~iei~iv~~~~~-~~~~l~~~ei~~~~~~i~ 243 (246)
.+.+-|.+++++.+ -.|.++|+++-+++..+.
T Consensus 74 t~~~vVkVvD~~T~EVIRQIPpEe~L~l~~~m~ 106 (117)
T PRK07738 74 LNEYYVQVVDERTNEVIREIPPKKLLDMYAAMM 106 (117)
T ss_pred CCcEEEEEEECCCCeeeeeCCCHHHHHHHHHHH
Confidence 35688999997643 599999999999988765
No 83
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=22.51 E-value=1.1e+02 Score=22.38 Aligned_cols=34 Identities=15% Similarity=0.123 Sum_probs=24.8
Q ss_pred ccceeCCCCcchhhhhHHHHHhccCceEEEEEcC
Q 025892 12 HITIFSPEGRLFQVEYAFKAVKATAITSIGVRGK 45 (246)
Q Consensus 12 ~~t~fsp~Gri~Q~eya~~av~~~G~tvigi~~~ 45 (246)
-+-+||..|+-.+.-...+..++.|.++|.|...
T Consensus 56 ~vi~is~sg~~~~~~~~~~~ak~~g~~vi~iT~~ 89 (131)
T PF01380_consen 56 LVIIISYSGETRELIELLRFAKERGAPVILITSN 89 (131)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHHTTSEEEEEESS
T ss_pred eeEeeeccccchhhhhhhHHHHhcCCeEEEEeCC
Confidence 3557888999887766666666568888888764
No 84
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=22.45 E-value=2.5e+02 Score=18.79 Aligned_cols=51 Identities=10% Similarity=0.230 Sum_probs=38.4
Q ss_pred CCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEeCCceEEEcCHHHHHHHHHHhh
Q 025892 187 PAFSYEETVQTAVSALQSVLQEDFKATEIEVGVVRSDDRVFRVLSSEEIDEHLTAIS 243 (246)
Q Consensus 187 ~~~s~~ea~~l~~~al~~~~~~d~~~~~iei~iv~~~~~~~~~l~~~ei~~~~~~i~ 243 (246)
++++.++....+.+.+... ...+.+.+.+.+|..+..-+.+++...++...
T Consensus 20 ~~~s~~~L~~~i~~~~~~~------~~~~~l~Y~D~dgD~V~i~sd~Dl~~a~~~~~ 70 (84)
T PF00564_consen 20 SDVSFDDLRSKIREKFGLL------DEDFQLKYKDEDGDLVTISSDEDLQEAIEQAK 70 (84)
T ss_dssp STSHHHHHHHHHHHHHTTS------TSSEEEEEEETTSSEEEESSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCC------CccEEEEeeCCCCCEEEeCCHHHHHHHHHHHH
Confidence 4556677766666665543 35799999999988788888999999988654
No 85
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=22.21 E-value=2.8e+02 Score=19.36 Aligned_cols=48 Identities=15% Similarity=0.179 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEeCCceEEEcCHHHHHHHHHHhh
Q 025892 188 AFSYEETVQTAVSALQSVLQEDFKATEIEVGVVRSDDRVFRVLSSEEIDEHLTAIS 243 (246)
Q Consensus 188 ~~s~~ea~~l~~~al~~~~~~d~~~~~iei~iv~~~~~~~~~l~~~ei~~~~~~i~ 243 (246)
+.+.++....+.+.+... .|.|.+++.++..+..-+..|+++.++-..
T Consensus 21 ~~~~~~L~~ev~~rf~l~--------~f~lKYlDde~e~v~lssd~eLeE~~rl~~ 68 (81)
T cd06396 21 NTTWASVEAMVKVSFGLN--------DIQIKYVDEENEEVSVNSQGEYEEALKSAV 68 (81)
T ss_pred CCCHHHHHHHHHHHhCCC--------cceeEEEcCCCCEEEEEchhhHHHHHHHHH
Confidence 446666666555554422 799999999987788889999999988443
No 86
>KOG2599 consensus Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme transport and metabolism]
Probab=22.08 E-value=5.4e+02 Score=22.57 Aligned_cols=100 Identities=13% Similarity=0.049 Sum_probs=55.9
Q ss_pred HHcCCCCCHHHHHHHHHHHhhhhhcc------CC-CCCccceeEEEEEeCCCCcEEEEEcCCceeeeeeEEEecCChHHH
Q 025892 103 FKFGYEMPVDVLSRWIADKSQVYTQH------AY-MRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEA 175 (246)
Q Consensus 103 ~~~~~~~~~~~la~~l~~~~~~~t~~------~~-~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~ 175 (246)
+-.|.++..+.-+....+.+|.-.-. .- .-|.+..+.+.|.+....+..|.+. .-+..-+|.|.-+.
T Consensus 157 iLtg~~I~t~eda~~a~~~lhq~~v~~vVITS~~~~~~~g~~l~c~gs~~~~~~f~~~ip------ki~~~FtGTGDLfs 230 (308)
T KOG2599|consen 157 ILTGMEIRTEEDAKRAVEKLHQKGVKTVVITSFDLGEFTGETLRCIGSSCGSERFRYLIP------KIDGVFTGTGDLFS 230 (308)
T ss_pred hhcCCeeccHHHHHHHHHHHHHhCCCEEEEEeeeeCCCCCcEEEEEEeccCCceEEEEec------ccceEEecccHHHH
Confidence 34566665555555544444321000 00 0133445555666653323344432 23566788998777
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhc
Q 025892 176 INFLEKKMKNDPAFSYEETVQTAVSALQSVLQE 208 (246)
Q Consensus 176 ~~~Le~~~~~~~~~s~~ea~~l~~~al~~~~~~ 208 (246)
-=+|....+...+-++..|++.++.++..++.+
T Consensus 231 aLLla~~~~~~~~~~l~~a~e~~ls~~~~viqk 263 (308)
T KOG2599|consen 231 ALLLAWLHESPDNDDLSKAVEQVLSSVQAVIQK 263 (308)
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHH
Confidence 666666544333467788888888888887765
No 87
>PRK08452 flagellar protein FlaG; Provisional
Probab=21.85 E-value=3.6e+02 Score=20.44 Aligned_cols=31 Identities=23% Similarity=0.319 Sum_probs=24.9
Q ss_pred CcEEEEEEEeCC-ceEEEcCHHHHHHHHHHhh
Q 025892 213 TEIEVGVVRSDD-RVFRVLSSEEIDEHLTAIS 243 (246)
Q Consensus 213 ~~iei~iv~~~~-~~~~~l~~~ei~~~~~~i~ 243 (246)
+.+-|.|++.+. .-.|.++||++-++.+.+.
T Consensus 82 ~~~vVkVvD~~T~eVIRqIP~Ee~L~l~~~m~ 113 (124)
T PRK08452 82 KGLVVSVKEANGGKVIREIPSKEAIELMEYMR 113 (124)
T ss_pred CcEEEEEEECCCCceeeeCCCHHHHHHHHHHH
Confidence 468888898764 3699999999998888765
No 88
>TIGR03544 DivI1A_domain DivIVA domain. This model describes a domain found in Bacillus subtilis cell division initiation protein DivIVA, and homologs, toward the N-terminus. It is also found as a repeated domain in certain other proteins, including family TIGR03543.
Probab=21.72 E-value=78 Score=17.96 Aligned_cols=18 Identities=22% Similarity=0.493 Sum_probs=14.7
Q ss_pred EEEcCHHHHHHHHHHhhc
Q 025892 227 FRVLSSEEIDEHLTAISE 244 (246)
Q Consensus 227 ~~~l~~~ei~~~~~~i~~ 244 (246)
++=++++||+.+|.++..
T Consensus 15 ~rGY~~~eVD~fLd~v~~ 32 (34)
T TIGR03544 15 LRGYDAAEVDAFLDRVAD 32 (34)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 455889999999998764
No 89
>PF09887 DUF2114: Uncharacterized protein conserved in archaea (DUF2114); InterPro: IPR008303 There are currently no experimental data for members of this group or their homologues. The exact function of this protein is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=20.88 E-value=3.6e+02 Score=24.74 Aligned_cols=59 Identities=20% Similarity=0.280 Sum_probs=43.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhhc-cCCCC-cEEEEEEEeCCceEEEcCHHHHHHHHHHhhc
Q 025892 185 NDPAFSYEETVQTAVSALQSVLQE-DFKAT-EIEVGVVRSDDRVFRVLSSEEIDEHLTAISE 244 (246)
Q Consensus 185 ~~~~~s~~ea~~l~~~al~~~~~~-d~~~~-~iei~iv~~~~~~~~~l~~~ei~~~~~~i~~ 244 (246)
|--.||.|-.-+++++.|.+..++ .++-. .++. +|+..|...-.=+|+|+.+|+..+.+
T Consensus 58 ~g~eLTrEsV~elVrdtl~e~~k~A~l~i~~DL~F-VVRSTGVvAgf~speevg~~I~ALA~ 118 (448)
T PF09887_consen 58 WGVELTRESVAELVRDTLLESHKKAHLDIKKDLDF-VVRSTGVVAGFDSPEEVGEFIKALAD 118 (448)
T ss_pred cCccccHHHHHHHHHHHHHHHHHHcCCCccccceE-EEeecceeeccCCHHHHHHHHHHHHh
Confidence 345688888889999998887765 34433 4554 66777765556789999999987764
No 90
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=20.74 E-value=87 Score=28.95 Aligned_cols=57 Identities=18% Similarity=0.191 Sum_probs=37.2
Q ss_pred cceeEE--EEEeCCCCcEEEEEcCCceeeee---eEEEecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHH
Q 025892 135 GVVAMV--LGIDEEKGPQLYKCDPAGHFFGH---KATSAGLKEQEAINFLEKKMKNDPAFSYEETVQTAVSA 201 (246)
Q Consensus 135 ~v~~iv--~G~D~~~gp~Ly~id~~G~~~~~---~~~a~G~g~~~~~~~Le~~~~~~~~~s~~ea~~l~~~a 201 (246)
.+..|+ ||-|. .+..+|..|.+... +.||.|+|+ +||..- ..-+++++|.-+++.++
T Consensus 267 ~vrTIIDIGGQDs----K~I~ld~~G~V~dF~MNDKCAAGTGr-----FLE~mA-~~Lgi~leEl~~lA~~a 328 (432)
T TIGR02259 267 GTRTVLDIGGQDT----KGIQIDDHGIVENFQMNDRCAAGCGR-----YLGYIA-DEMNMGLHELGPLAMKS 328 (432)
T ss_pred CCCEEEEeCCCce----EEEEEcCCCcEeeeeecCcccccchH-----HHHHHH-HHcCCCHHHHHHHHhcC
Confidence 344444 67765 38899999987753 588999995 555432 13457777776665554
No 91
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=20.69 E-value=1.4e+02 Score=24.54 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=27.8
Q ss_pred ceeCCCCcchhhhhHHHHHhccCceEEEEEcCCe
Q 025892 14 TIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDS 47 (246)
Q Consensus 14 t~fsp~Gri~Q~eya~~av~~~G~tvigi~~~dg 47 (246)
-.+|..|+--.+-.+.+..++.|.++|+|.+.++
T Consensus 114 i~iS~SG~s~~v~~a~~~Ak~~G~~vI~IT~~~~ 147 (196)
T PRK10886 114 LAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDG 147 (196)
T ss_pred EEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 4588899988888888877777999999998644
No 92
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=20.24 E-value=1.2e+02 Score=30.15 Aligned_cols=45 Identities=16% Similarity=0.463 Sum_probs=32.7
Q ss_pred CCccccceeCCCCcch-------hhhhHHHHHhccCceEEEEEcCCeEEEEE
Q 025892 8 GYDRHITIFSPEGRLF-------QVEYAFKAVKATAITSIGVRGKDSVCVVT 52 (246)
Q Consensus 8 ~yd~~~t~fsp~Gri~-------Q~eya~~av~~~G~tvigi~~~dgVvlaa 52 (246)
-|+..+-+|+|.|++. .+.+|-.--..-|..|+|.+-++-+|-..
T Consensus 384 lf~d~VyvfTPkG~vi~LP~GatplDFAY~vHt~iG~~c~gAkVnG~ivpl~ 435 (701)
T COG0317 384 LFPDRVYVFTPKGKVIDLPKGATPLDFAYAVHTDIGHRCIGAKVNGRIVPLT 435 (701)
T ss_pred ccCceEEEECCCCCEEeCCCCCcchhhhhhhhchhcceeeEEEECCEEeccc
Confidence 3566788999999997 44555555444699999999987555443
No 93
>PF09702 Cas_Csa5: CRISPR-associated protein (Cas_Csa5); InterPro: IPR010157 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor family of Cas protein found in various species of Sulfolobus and Pyrococcus (all archaeal). It is found with two different CRISPR loci in Sulfolobus solfataricus.
Probab=20.22 E-value=3.3e+02 Score=20.00 Aligned_cols=64 Identities=14% Similarity=0.293 Sum_probs=33.3
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHhh---hcc-CCC-----CcEEEEEE--EeCCceEEEc----CHHHHHHHHHH
Q 025892 177 NFLEKKMKNDPAFSYEETVQTAVSALQSVL---QED-FKA-----TEIEVGVV--RSDDRVFRVL----SSEEIDEHLTA 241 (246)
Q Consensus 177 ~~Le~~~~~~~~~s~~ea~~l~~~al~~~~---~~d-~~~-----~~iei~iv--~~~~~~~~~l----~~~ei~~~~~~ 241 (246)
+++++. ---+|.|.++.....|++... .+. +.. ++.-+.+. ++++ ....+ +++||+.|++.
T Consensus 9 ~~vDRi---aNALs~E~v~~aL~dAlR~~~s~~~s~ei~~~~~~~~~~y~~v~~~ekeg-~~i~~g~lPt~~eVe~Fl~~ 84 (105)
T PF09702_consen 9 TYVDRI---ANALSPEAVEVALYDALRIFRSIIDSAEIDKSQVEEGRRYIAVIVKEKEG-NYIIVGYLPTDEEVEDFLDD 84 (105)
T ss_pred cHHHHH---HhhcCHHHHHHHHHHHHHHHHHHhccccccccccccCccccceeeccCCC-CEEecCCCCChHHHHHHHHH
Confidence 355554 124788777777777766543 221 111 12222222 2333 23332 48999999987
Q ss_pred hhc
Q 025892 242 ISE 244 (246)
Q Consensus 242 i~~ 244 (246)
+.+
T Consensus 85 v~~ 87 (105)
T PF09702_consen 85 VER 87 (105)
T ss_pred HHH
Confidence 653
Done!