Query 025892
Match_columns 246
No_of_seqs 119 out of 1087
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 19:59:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025892.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025892hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iru_A 20S proteasome; cell cy 100.0 6.3E-66 2.2E-70 439.1 31.1 246 1-246 1-246 (246)
2 1ryp_A 20S proteasome; multica 100.0 2E-65 6.9E-70 435.2 27.9 238 7-246 1-243 (243)
3 3h4p_A Proteasome subunit alph 100.0 1.1E-65 3.8E-70 441.1 22.7 239 1-244 4-242 (264)
4 1iru_B 20S proteasome; cell cy 100.0 8.9E-64 3E-68 422.6 29.1 232 6-243 2-233 (233)
5 1yar_A Proteasome alpha subuni 100.0 1.5E-63 5.2E-68 421.2 27.4 233 1-239 1-233 (233)
6 1ryp_C 20S proteasome; multica 100.0 5.7E-63 1.9E-67 420.4 30.1 234 8-244 4-243 (244)
7 1ryp_D 20S proteasome; multica 100.0 7.7E-63 2.6E-67 418.8 30.0 234 8-245 1-237 (241)
8 1iru_C 20S proteasome; cell cy 100.0 7.7E-63 2.6E-67 423.4 29.8 235 8-245 4-243 (261)
9 1iru_E 20S proteasome; cell cy 100.0 9.7E-63 3.3E-67 418.2 28.6 236 1-242 1-241 (241)
10 1iru_G 20S proteasome; cell cy 100.0 8.8E-63 3E-67 421.4 28.5 237 4-243 2-240 (254)
11 1j2p_A Alpha-ring, proteasome 100.0 2.9E-62 1E-66 416.4 30.0 231 8-244 7-238 (246)
12 1iru_D 20S proteasome; cell cy 100.0 1.2E-62 4.2E-67 419.2 26.8 231 9-245 3-235 (248)
13 1ryp_E 20S proteasome; multica 100.0 3E-62 1E-66 415.4 28.5 232 10-245 1-238 (242)
14 1ryp_B 20S proteasome; multica 100.0 6.1E-62 2.1E-66 415.4 29.7 232 8-242 4-250 (250)
15 3nzj_F Proteasome component C1 100.0 5.2E-62 1.8E-66 422.2 29.5 233 4-238 3-239 (288)
16 1iru_F 20S proteasome; cell cy 100.0 2.9E-62 1E-66 420.0 26.0 233 7-244 4-238 (263)
17 1ryp_G 20S proteasome; multica 100.0 7.6E-61 2.6E-65 407.2 29.2 236 6-243 1-239 (244)
18 1ryp_F 20S proteasome; multica 100.0 7.4E-62 2.5E-66 410.8 22.3 226 8-239 4-233 (233)
19 1q5q_A Proteasome alpha-type s 100.0 4.1E-52 1.4E-56 356.2 21.9 220 13-244 4-237 (259)
20 3mi0_A Proteasome subunit alph 100.0 3.3E-50 1.1E-54 341.7 26.5 208 24-243 16-238 (248)
21 3h4p_a Proteasome subunit beta 100.0 4E-49 1.4E-53 330.0 23.9 202 36-245 1-205 (219)
22 1yar_H Proteasome beta subunit 100.0 9.5E-48 3.2E-52 321.2 26.5 204 30-243 3-208 (217)
23 1j2q_H Proteasome beta subunit 100.0 1.7E-47 5.9E-52 316.2 25.5 198 37-243 1-201 (202)
24 2jay_A Proteasome; hydrolase; 100.0 4.5E-48 1.5E-52 335.5 22.9 232 6-244 22-276 (291)
25 3nzj_K Proteasome component PR 100.0 7.6E-48 2.6E-52 333.3 22.2 209 27-244 67-277 (287)
26 1q5r_H Proteasome beta-type su 100.0 3.7E-47 1.3E-51 330.0 24.3 211 28-244 58-284 (294)
27 1q5q_H Proteasome beta-type su 100.0 1.6E-46 5.5E-51 317.3 24.9 203 37-244 1-219 (235)
28 1ryp_L 20S proteasome; multica 100.0 8E-47 2.7E-51 314.5 22.3 200 37-244 1-202 (212)
29 1iru_L 20S proteasome; cell cy 100.0 1.2E-46 4.1E-51 311.6 22.9 200 37-245 1-202 (204)
30 1iru_H 20S proteasome; cell cy 100.0 4.4E-47 1.5E-51 314.5 19.3 198 37-241 1-200 (205)
31 1iru_N 20S proteasome; cell cy 100.0 7.5E-48 2.6E-52 322.2 14.7 204 30-239 3-209 (219)
32 1ryp_N 20S proteasome; multica 100.0 1.5E-47 5.2E-52 323.2 14.2 204 30-239 3-219 (233)
33 1iru_M 20S proteasome; cell cy 100.0 4.7E-45 1.6E-49 304.0 25.2 190 35-228 8-206 (213)
34 1ryp_H 20S proteasome; multica 100.0 2.7E-45 9.3E-50 303.8 21.4 193 29-230 3-197 (205)
35 1g0u_M Proteasome component PR 100.0 7.9E-47 2.7E-51 324.6 12.3 208 25-238 31-250 (266)
36 1ryp_K 20S proteasome; multica 100.0 1E-44 3.5E-49 298.7 23.3 190 37-232 2-194 (198)
37 3nzj_H Proteasome component PU 100.0 1.3E-44 4.5E-49 309.4 24.1 194 28-231 22-217 (261)
38 3unf_N Proteasome subunit beta 100.0 1.7E-45 5.9E-50 303.5 17.9 195 37-240 1-198 (199)
39 3unf_H Proteasome subunit beta 100.0 7.6E-45 2.6E-49 306.6 21.8 192 37-238 1-194 (234)
40 1ryp_M 20S proteasome; multica 100.0 3.1E-44 1E-48 300.9 25.2 190 35-228 8-215 (222)
41 1iru_J 20S proteasome; cell cy 100.0 1.2E-43 4.1E-48 293.9 24.8 191 35-231 7-201 (205)
42 1ryp_J 20S proteasome; multica 100.0 3.7E-43 1.3E-47 290.7 25.5 190 35-231 7-200 (204)
43 1iru_K 20S proteasome; cell cy 100.0 1.1E-43 3.7E-48 293.3 22.1 189 37-231 2-192 (201)
44 1ryp_I 20S proteasome; multica 100.0 3E-43 1E-47 294.9 23.9 186 37-231 1-188 (222)
45 1iru_I 20S proteasome; cell cy 100.0 2.7E-42 9.3E-47 291.2 23.5 187 37-233 1-189 (234)
46 2z3b_A ATP-dependent protease 100.0 3.6E-36 1.2E-40 244.1 17.5 167 35-220 4-179 (180)
47 1m4y_A ATP-dependent protease 100.0 1.3E-35 4.5E-40 238.9 17.9 166 37-220 1-171 (171)
48 1g3k_A ATP-dependent protease 100.0 2.5E-35 8.7E-40 237.9 17.7 167 37-221 1-173 (174)
49 1yo5_C SAM pointed domain cont 57.0 17 0.00058 25.4 4.5 26 217-242 31-56 (97)
50 2dao_A Transcription factor ET 48.6 22 0.00075 25.7 4.1 26 217-242 28-53 (118)
51 1vd2_A Protein kinase C, IOTA 44.5 37 0.0013 23.2 4.6 50 186-240 23-72 (89)
52 3jtg_A ETS-related transcripti 44.1 34 0.0012 24.1 4.5 26 217-242 25-50 (103)
53 2hc5_A ORF 99, hypothetical pr 41.8 62 0.0021 23.2 5.7 32 212-243 66-98 (117)
54 1wwx_A E74-like factor 5 ESE-2 39.0 28 0.00097 24.7 3.4 26 217-242 29-54 (107)
55 3rj2_X ORF158L protein, putati 36.7 10 0.00034 27.5 0.7 16 8-23 54-69 (138)
56 2yxo_A Histidinol phosphatase; 32.0 29 0.001 27.9 3.0 32 14-46 8-39 (267)
57 3hvz_A Uncharacterized protein 31.3 29 0.00099 23.0 2.3 41 9-50 4-51 (78)
58 1hbx_G ETS-domain protein ELK- 29.4 45 0.0015 25.3 3.3 26 217-243 25-50 (157)
59 3jx9_A Putative phosphoheptose 26.0 49 0.0017 25.4 3.1 31 13-44 81-112 (170)
60 1bc8_C SAP-1, protein (SAP-1 E 24.8 29 0.001 24.0 1.4 25 217-242 24-48 (93)
61 1pue_E Protein (transcription 23.1 1.3E+02 0.0045 20.4 4.5 26 217-242 21-48 (89)
62 1fli_A FLI-1; transcription/DN 22.4 35 0.0012 23.9 1.4 25 217-242 25-49 (98)
63 1oey_J P40-PHOX, neutrophil cy 21.3 2.2E+02 0.0074 20.0 5.4 69 150-241 9-77 (107)
64 3fpw_A HBPS, extracellular HAE 20.5 1.5E+02 0.0051 23.2 4.9 37 186-225 62-98 (192)
65 1awc_A Protein (GA binding pro 20.1 41 0.0014 24.0 1.4 25 217-242 20-44 (110)
No 1
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=100.00 E-value=6.3e-66 Score=439.06 Aligned_cols=246 Identities=61% Similarity=0.989 Sum_probs=230.8
Q ss_pred CCCCCCCCCccccceeCCCCcchhhhhHHHHHhccCceEEEEEcCCeEEEEEeccCCCcccccCCceeeEEecCcEEEEE
Q 025892 1 MSRGSGAGYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLA 80 (246)
Q Consensus 1 ~~~~~~~~yd~~~t~fsp~Gri~Q~eya~~av~~~G~tvigi~~~dgVvlaad~~~~~~l~~~~~~~Ki~~i~~~i~~~~ 80 (246)
|.|+++++||+++|+|||||||||+|||.+|++++|+|+|||+++||||||+|+|.+++++.+++.+||++|++|++|++
T Consensus 1 ~~m~~~~~yd~~~t~fsp~Grl~QvEya~~av~~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~ 80 (246)
T 1iru_A 1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCVM 80 (246)
T ss_dssp -CCSCCCTTTTTSSCCCTTSCCHHHHHHHHHHHTTCCEEEEEECSSEEEEEEECCCCCSSBCGGGCCSEEESSSSCEEEE
T ss_pred CCCCccCCcCCCCccCCCCCeehHHHHHHHHHhcCCCCEEEEEeCCEEEEEEeecCCCcccCCCccCceEEECCCEEEEE
Confidence 67777889999999999999999999999999944999999999999999999999988998899999999999999999
Q ss_pred ecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCcee
Q 025892 81 TGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHF 160 (246)
Q Consensus 81 sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~ 160 (246)
+|+.+|++.|.++++.+++.|+++++++++++.+++++++++|.|+++++.|||++++||||||+.+||+||.+||+|++
T Consensus 81 aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~ 160 (246)
T 1iru_A 81 TGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYY 160 (246)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSBCCCSEEEEEEEEETTTEEEEEEECTTSCE
T ss_pred eccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCCCCcceEEEEEEEeCCCCeEEEEEcCCeeE
Confidence 99999999999999999999999999999999999999999999999988999999999999997678999999999999
Q ss_pred eeeeEEEecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEeCCceEEEcCHHHHHHHHH
Q 025892 161 FGHKATSAGLKEQEAINFLEKKMKNDPAFSYEETVQTAVSALQSVLQEDFKATEIEVGVVRSDDRVFRVLSSEEIDEHLT 240 (246)
Q Consensus 161 ~~~~~~a~G~g~~~~~~~Le~~~~~~~~~s~~ea~~l~~~al~~~~~~d~~~~~iei~iv~~~~~~~~~l~~~ei~~~~~ 240 (246)
.+++++|+|+|+++++++||++|+..++|+++||++++++||..+.+||.+..+++|++|+++++.|+.++++||+++++
T Consensus 161 ~~~~~~aiG~gs~~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~rd~sg~~i~v~vi~~~g~~~~~l~~~ei~~~~~ 240 (246)
T 1iru_A 161 CGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLV 240 (246)
T ss_dssp EEBSEEEEETTHHHHHHHHHHHTTSCCCCCHHHHHHHHHHHHHHHTTCCCCTTSEEEEEEETTEEEEEECCHHHHHHHHH
T ss_pred EEeeEEEECCCcHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEECCCCeEEECCHHHHHHHHH
Confidence 99999999999999999999996322399999999999999999999995545899999999887799999999999999
Q ss_pred HhhccC
Q 025892 241 AISERD 246 (246)
Q Consensus 241 ~i~~~~ 246 (246)
.|.++|
T Consensus 241 ~~~~~~ 246 (246)
T 1iru_A 241 ALAERD 246 (246)
T ss_dssp HHHTC-
T ss_pred HhhccC
Confidence 998875
No 2
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=100.00 E-value=2e-65 Score=435.19 Aligned_cols=238 Identities=52% Similarity=0.860 Sum_probs=225.5
Q ss_pred CCCccccceeCCCCcchhhhhHHHHHhccCceEEEEEcCCeEEEEEeccCCCcccccCCceeeEEecCcEEEEEecchHH
Q 025892 7 AGYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGNTAD 86 (246)
Q Consensus 7 ~~yd~~~t~fsp~Gri~Q~eya~~av~~~G~tvigi~~~dgVvlaad~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D 86 (246)
++||+++|+|||||||||+|||.||++++|+|+|||+++||||||+|+|.+++++.+++.+||++|++|++|+++|+.+|
T Consensus 1 ~~yd~~~t~fsp~Grl~QvEYA~~av~~~Gtt~vgi~~~dgVvlaad~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD 80 (243)
T 1ryp_A 1 AGYDRHITIFSPEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTVSYIFCISRTIGMVVNGPIPD 80 (243)
T ss_dssp CGGGGTSSSCCTTSCCHHHHHHHHHTTTTCCCEEEEECSSEEEEEEECCCCCTTBCGGGCCSEEECSSSCEEEEESCHHH
T ss_pred CCCCCCCceECCCCeeHHHHHHHHHHhcCCCcEEEEEeCCEEEEEEEecCCccccCCCcCCceEEECCCEEEEEEecHHH
Confidence 47999999999999999999999999933999999999999999999999999998899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCceeeeeeEE
Q 025892 87 ARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKAT 166 (246)
Q Consensus 87 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~~~~ 166 (246)
++.|.+.++.+++.|+++++++|+++.++++|++++|.|++++++|||+|++||||||+++||+||++||+|++.+++++
T Consensus 81 ~~~l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~l~~y~~~~~~rP~~v~~lvaG~D~~~gp~Ly~~dp~G~~~~~~~~ 160 (243)
T 1ryp_A 81 ARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKAT 160 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEETTTEEEEEEECTTSCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccccceEEEEEEEcCCCCcEEEEEcCCCCEEEEEEE
Confidence 99999999999999999999999999999999999999999988999999999999997678999999999999999999
Q ss_pred EecCChHHHHHHHHhhccCCC-----CCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEeCCceEEEcCHHHHHHHHHH
Q 025892 167 SAGLKEQEAINFLEKKMKNDP-----AFSYEETVQTAVSALQSVLQEDFKATEIEVGVVRSDDRVFRVLSSEEIDEHLTA 241 (246)
Q Consensus 167 a~G~g~~~~~~~Le~~~~~~~-----~~s~~ea~~l~~~al~~~~~~d~~~~~iei~iv~~~~~~~~~l~~~ei~~~~~~ 241 (246)
|+|++++.++++||+.|+..+ +||++||++++++||..+.+||.+..+++|++|++++ |+.++++||++++..
T Consensus 161 a~G~gs~~a~~~Le~~~~~~~~~~~~~ms~eea~~l~~~al~~~~~rd~s~~~iev~vi~~~g--~~~l~~~ei~~~~~~ 238 (243)
T 1ryp_A 161 ATGPKQQEITTNLENHFKKSKIDHINEESWEKVVEFAITHMIDALGTEFSKNDLEVGVATKDK--FFTLSAENIEERLVA 238 (243)
T ss_dssp EESTTHHHHHHHHHHHHHHHCSSSCCCSSHHHHHHHHHHHHHHHHTCCCCTTSEEEEEEETTE--EEECCHHHHHHHHHH
T ss_pred EECCCcHHHHHHHHHHhhhcccccccCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEECCC--eEECCHHHHHHHHHH
Confidence 999999999999999974211 8999999999999999999999655699999999985 999999999999999
Q ss_pred hhccC
Q 025892 242 ISERD 246 (246)
Q Consensus 242 i~~~~ 246 (246)
|.++|
T Consensus 239 ~~~~~ 243 (243)
T 1ryp_A 239 IAEQD 243 (243)
T ss_dssp HTTTC
T ss_pred hhccC
Confidence 98876
No 3
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1.1e-65 Score=441.12 Aligned_cols=239 Identities=34% Similarity=0.602 Sum_probs=217.4
Q ss_pred CCCCCCCCCccccceeCCCCcchhhhhHHHHHhccCceEEEEEcCCeEEEEEeccCCCcccccCCceeeEEecCcEEEEE
Q 025892 1 MSRGSGAGYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLA 80 (246)
Q Consensus 1 ~~~~~~~~yd~~~t~fsp~Gri~Q~eya~~av~~~G~tvigi~~~dgVvlaad~~~~~~l~~~~~~~Ki~~i~~~i~~~~ 80 (246)
|.+.++++||+++|+|||||||||||||.+|++ +|+|+|||+++||||||+|+|.+++++..++.+||++|++|++|++
T Consensus 4 ~~~~~~~~yd~~~t~fSp~Grl~QvEYA~~av~-~Gtt~vgi~~~dgVVlaaD~r~~~~li~~~~~~KI~~i~d~i~~~~ 82 (264)
T 3h4p_A 4 MQMVPPSAYDRAITVFSPEGRLYQVEYAREAVR-RGTTAIGIACKDGVVLAVDRRITSKLVKIRSIEKIFQIDDHVAAAT 82 (264)
T ss_dssp ------------CCCCCSSSSCHHHHHHHHHHH-HSCCEEEECCSSEEEEEEECCCCSTTBCTTTCCCEEEEETTEEEEE
T ss_pred CcCCCccccCCCcceECCCCeeHHHHhHHHHHh-cCCcEEEEEECCEEEEEEecCccCCccccCccccEEEecCcEEEEe
Confidence 777889999999999999999999999999999 4999999999999999999999977888899999999999999999
Q ss_pred ecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCcee
Q 025892 81 TGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHF 160 (246)
Q Consensus 81 sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~ 160 (246)
+|+.+|++.|+++++.+++.|+++++++++++.++++|++++|.|++++++|||+|++||||||+ +||+||++||+|++
T Consensus 83 aG~~aD~~~l~~~~r~~~~~y~~~~~~~i~v~~la~~l~~~~~~yt~~~~~rP~~v~~lvaG~D~-~gp~Ly~iDp~G~~ 161 (264)
T 3h4p_A 83 SGLVADARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDK-NEARLFETDPSGAL 161 (264)
T ss_dssp EECSHHHHHHHTTHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHTTSBSSCCCCSEEEEEEEEET-TEEEEEEECTTCCC
T ss_pred ccchHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCCeeEEEEEEEEeC-CcCEEEEECCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999996 79999999999999
Q ss_pred eeeeEEEecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEeCCceEEEcCHHHHHHHHH
Q 025892 161 FGHKATSAGLKEQEAINFLEKKMKNDPAFSYEETVQTAVSALQSVLQEDFKATEIEVGVVRSDDRVFRVLSSEEIDEHLT 240 (246)
Q Consensus 161 ~~~~~~a~G~g~~~~~~~Le~~~~~~~~~s~~ea~~l~~~al~~~~~~d~~~~~iei~iv~~~~~~~~~l~~~ei~~~~~ 240 (246)
.+++++|+|+|+++++++||+.| +++||++||++++++||..+.++ .+.++++|++|++++.+|++++++||+++++
T Consensus 162 ~~~~~~aiGsgs~~a~~~Le~~~--~~~ms~eea~~la~~al~~a~~~-~sg~~iev~vi~~~~~~~~~l~~~ei~~~~~ 238 (264)
T 3h4p_A 162 IEYKATAIGSGRPVVMELLEKEY--RDDITLDEGLELAITALTKANED-IKPENVDVCIITVKDAQFKKIPVEEIKKLIE 238 (264)
T ss_dssp EEESEEEESTTHHHHTTTHHHHC--CTTCCSHHHHHHHHHHHHHHSSS-CCTTSEEEEEEETTTTEEEECCTTTTGGGTT
T ss_pred EecCeEEECCCHHHHHHHHHHhc--cCCCCHHHHHHHHHHHHHHHHhc-cCCCeEEEEEEEeCCCcEEECCHHHHHHHHH
Confidence 99999999999999999999995 78999999999999999999987 5556999999998877799999999999998
Q ss_pred Hhhc
Q 025892 241 AISE 244 (246)
Q Consensus 241 ~i~~ 244 (246)
.+.+
T Consensus 239 ~~~~ 242 (264)
T 3h4p_A 239 KVKK 242 (264)
T ss_dssp TTTT
T ss_pred HHHH
Confidence 8763
No 4
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=100.00 E-value=8.9e-64 Score=422.60 Aligned_cols=232 Identities=35% Similarity=0.595 Sum_probs=222.0
Q ss_pred CCCCccccceeCCCCcchhhhhHHHHHhccCceEEEEEcCCeEEEEEeccCCCcccccCCceeeEEecCcEEEEEecchH
Q 025892 6 GAGYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGNTA 85 (246)
Q Consensus 6 ~~~yd~~~t~fsp~Gri~Q~eya~~av~~~G~tvigi~~~dgVvlaad~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~ 85 (246)
.++||+++|+|||||||||+|||.+|+++ |+|+|||+++||||||+|+|.+++++.+++.+||++|++|++|++||+.+
T Consensus 2 ~~~yd~~~t~fsp~Grl~QvEya~~av~~-Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~a 80 (233)
T 1iru_B 2 ERGYSFSLTTFSPSGKLVQIEYALAAVAG-GAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGLVYSGMGP 80 (233)
T ss_dssp CCCCCSBSCCCCTTSCCHHHHHHHHHHHT-SCCEEEEECSSCEEEEEECCCCCSSBCSTTCCSSEESSSSEEEEEEECHH
T ss_pred CCCccCCceeECCCCeEehhHhHHHHHHc-CCcEEEEEeCCEEEEEEEecCCccccccccCCeEEEECCCEEEEEEEccH
Confidence 35899999999999999999999999995 99999999999999999999998899889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCceeeeeeE
Q 025892 86 DARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKA 165 (246)
Q Consensus 86 D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~~~ 165 (246)
|++.|.++++.+++.|+++++++++++.+++++++.+|.|++++++|||++++||||||+ +||+||.+||+|++.++++
T Consensus 81 D~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rP~~v~~lvaG~D~-~gp~Ly~id~~G~~~~~~~ 159 (233)
T 1iru_B 81 DYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNE-GRPYLFQSDPSGAYFAWKA 159 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCSEEEEEEEECS-SSEEEEEECTTSCEEEBSE
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCCCCcEEEEEEEEEeC-CCCeEEEECCCCCEEEeeE
Confidence 999999999999999999999999999999999999999999989999999999999995 7899999999999999999
Q ss_pred EEecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEeCCceEEEcCHHHHHHHHHHhh
Q 025892 166 TSAGLKEQEAINFLEKKMKNDPAFSYEETVQTAVSALQSVLQEDFKATEIEVGVVRSDDRVFRVLSSEEIDEHLTAIS 243 (246)
Q Consensus 166 ~a~G~g~~~~~~~Le~~~~~~~~~s~~ea~~l~~~al~~~~~~d~~~~~iei~iv~~~~~~~~~l~~~ei~~~~~~i~ 243 (246)
+|+|+|+++++++||++| +++||++||++++++||..+.+||.+.++++|++|++++ ++.++++||++++++|+
T Consensus 160 ~aiG~gs~~a~~~Le~~~--~~~ms~eea~~la~~al~~~~~~d~sg~~i~v~vi~~~g--~~~l~~~ei~~~~~~~~ 233 (233)
T 1iru_B 160 TAMGKNYVNGKTFLEKRY--NEDLELEDAIHTAILTLKESFEGQMTEDNIEVGICNEAG--FRRLTPTEVKDYLAAIA 233 (233)
T ss_dssp EEESTTHHHHHHHHHHHC--CTTCCHHHHHHHHHHHHHTTCCSCCCSSSEEEEEEETTE--EEECCHHHHHHHHTTCC
T ss_pred EEECCCCHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEEECCC--EEECCHHHHHHHHHhcC
Confidence 999999999999999996 689999999999999999999999665699999999986 99999999999998763
No 5
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=100.00 E-value=1.5e-63 Score=421.15 Aligned_cols=233 Identities=36% Similarity=0.609 Sum_probs=212.2
Q ss_pred CCCCCCCCCccccceeCCCCcchhhhhHHHHHhccCceEEEEEcCCeEEEEEeccCCCcccccCCceeeEEecCcEEEEE
Q 025892 1 MSRGSGAGYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLA 80 (246)
Q Consensus 1 ~~~~~~~~yd~~~t~fsp~Gri~Q~eya~~av~~~G~tvigi~~~dgVvlaad~~~~~~l~~~~~~~Ki~~i~~~i~~~~ 80 (246)
|-|+. ++||+++|+|||||||||+|||.+|+++ |+|+|||+++||||||+|+|.+.+++..++.+||++|++|++|++
T Consensus 1 ~~m~~-~~yd~~~t~fsp~Grl~QvEya~~av~~-Gtt~vgi~~~dgVvlaaD~r~~~~~~~~~~~~Ki~~i~~~i~~~~ 78 (233)
T 1yar_A 1 MQQGQ-MAYSRAITVFSPDGRLFQVEYAREAVKK-GSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLIDDYVAAVT 78 (233)
T ss_dssp -------------CCCCTTSCCHHHHHHHHHHTT-SCCEEEEEETTEEEEEECCCCCCTTBCSTTCCSEEEEETTEEEEE
T ss_pred CCccc-ccCCCCCceECcCCeeHHHHhHHHHHhc-CCcEEEEEECCEEEEEEeccCCcccccccccCeEEEecCCEEEEE
Confidence 44444 5999999999999999999999999995 999999999999999999999977888889999999999999999
Q ss_pred ecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCcee
Q 025892 81 TGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHF 160 (246)
Q Consensus 81 sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~ 160 (246)
||+.+|++.|.++++.+++.|+++++++++++.+++++++++|.|+++++.|||++++||||||+ +||+||.+||+|++
T Consensus 79 aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~-~gp~Ly~id~~G~~ 157 (233)
T 1yar_A 79 SGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQ-IGPRLFDCDPAGTI 157 (233)
T ss_dssp EEBHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECS-SCEEEEEECTTCCE
T ss_pred eeCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCcCcceEEEEEEEEeC-CCCEEEEECCCCCE
Confidence 99999999999999999999999999999999999999999999999989999999999999997 79999999999999
Q ss_pred eeeeEEEecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEeCCceEEEcCHHHHHHHH
Q 025892 161 FGHKATSAGLKEQEAINFLEKKMKNDPAFSYEETVQTAVSALQSVLQEDFKATEIEVGVVRSDDRVFRVLSSEEIDEHL 239 (246)
Q Consensus 161 ~~~~~~a~G~g~~~~~~~Le~~~~~~~~~s~~ea~~l~~~al~~~~~~d~~~~~iei~iv~~~~~~~~~l~~~ei~~~~ 239 (246)
.+++++|+|+|+++++++||+.| +++||++||++++++||..+.++|++.++++|++|+++++ |++++++||++++
T Consensus 158 ~~~~~~aiG~gs~~a~~~Le~~~--~~~~s~eea~~la~~al~~~~~~d~s~~~i~v~vi~~~~~-~~~~~~~ei~~~l 233 (233)
T 1yar_A 158 NEYKATAIGSGKDAVVSFLEREY--KENLPEKEAVTLGIKALKSSLEEGEELKAPEIASITVGNK-YRIYDQEEVKKFL 233 (233)
T ss_dssp EEBSEEEESTTHHHHHHHHHHHC--CTTCCHHHHHHHHHHHHHHTSCSSCCCCCCEEEEEETTSC-CEECCHHHHHTTC
T ss_pred EeeeEEEEcCCcHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC-EEECCHHHHHhhC
Confidence 99999999999999999999996 6899999999999999999999998656899999999986 9999999998763
No 6
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=100.00 E-value=5.7e-63 Score=420.36 Aligned_cols=234 Identities=32% Similarity=0.562 Sum_probs=221.9
Q ss_pred CCccccceeCCCCcchhhhhHHHHHhccCceEEEEEcCCeEEEEEeccCCCcccc-cCCceeeEEecCcEEEEEecchHH
Q 025892 8 GYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLD-QTCVTHLFPITKYLGLLATGNTAD 86 (246)
Q Consensus 8 ~yd~~~t~fsp~Gri~Q~eya~~av~~~G~tvigi~~~dgVvlaad~~~~~~l~~-~~~~~Ki~~i~~~i~~~~sG~~~D 86 (246)
+||+++|+|||||||||+|||.+|+++ |+|+|||+++||||||+|+|.+.+++. +++.+||++|++|++|++||+.+|
T Consensus 4 ~yd~~~t~fsp~Grl~QvEyA~~av~~-Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD 82 (244)
T 1ryp_C 4 RYDSRTTIFSPEGRLYQVEYALESISH-AGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTAD 82 (244)
T ss_dssp GGCCCTTCBCTTSCBHHHHHHHHHHTT-SCCEEEEEETTEEEEEEECSSCCSSBCSTTCCSSEEESSSSEEEEEEECHHH
T ss_pred ccCCCCceECcCCeeHHHHhHHHHHhc-CCcEEEEEeCCEEEEEEeeccCCcCccCCCCCCcEEEECCCEEEEEEEcHHH
Confidence 799999999999999999999999995 999999999999999999999966666 889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCceeeeeeEE
Q 025892 87 ARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKAT 166 (246)
Q Consensus 87 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~~~~ 166 (246)
++.|.++++.+++.|+++++++++++.+++++++++|.|++++++|||++++||||||+++||+||.+||+|++.+++++
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~ 162 (244)
T 1ryp_C 83 AEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAI 162 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEETTTEEEEEEECTTCCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccceEEEEEEEEEcCCCCCEEEEECCCccEEeeeEE
Confidence 99999999999999999999999999999999999999999999999999999999995478999999999999999999
Q ss_pred EecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhc-cCCCCcEEEEEEE--eCCce--EEEcCHHHHHHHHHH
Q 025892 167 SAGLKEQEAINFLEKKMKNDPAFSYEETVQTAVSALQSVLQE-DFKATEIEVGVVR--SDDRV--FRVLSSEEIDEHLTA 241 (246)
Q Consensus 167 a~G~g~~~~~~~Le~~~~~~~~~s~~ea~~l~~~al~~~~~~-d~~~~~iei~iv~--~~~~~--~~~l~~~ei~~~~~~ 241 (246)
|+|+|+++++++||++| +++|+++||++++++||..+.+| +.+.++++|++|+ ++++. |+.++++||++++..
T Consensus 163 aiGsgs~~a~~~Le~~~--~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~~~~~~~~~~l~~~ei~~~~~~ 240 (244)
T 1ryp_C 163 SVGANTSAAQTLLQMDY--KDDMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGANDGEVYQKIFKPQEIKDILVK 240 (244)
T ss_dssp EESTTHHHHHHHHHHHC--CTTCCHHHHHHHHHHHHHHHCSSSSCCGGGEEEEEEECCSSSSSCEEEECCHHHHHHHHHH
T ss_pred EECCCcHHHHHHHHHhh--hcCCCHHHHHHHHHHHHHHHhccccCCCCcEEEEEEEeecCCCceeEEECCHHHHHHHHHH
Confidence 99999999999999996 68999999999999999999999 5554589999999 88765 999999999999998
Q ss_pred hhc
Q 025892 242 ISE 244 (246)
Q Consensus 242 i~~ 244 (246)
|..
T Consensus 241 ~~~ 243 (244)
T 1ryp_C 241 TGI 243 (244)
T ss_dssp HTC
T ss_pred hhc
Confidence 753
No 7
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=100.00 E-value=7.7e-63 Score=418.84 Aligned_cols=234 Identities=36% Similarity=0.589 Sum_probs=219.2
Q ss_pred CCccccceeCCCCcchhhhhHHHHHhccCceEEEEEcCCeEEEEEeccCCCcccccC-CceeeEEecCcEEEEEecchHH
Q 025892 8 GYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQT-CVTHLFPITKYLGLLATGNTAD 86 (246)
Q Consensus 8 ~yd~~~t~fsp~Gri~Q~eya~~av~~~G~tvigi~~~dgVvlaad~~~~~~l~~~~-~~~Ki~~i~~~i~~~~sG~~~D 86 (246)
+||+++|+|||||||||+|||.+|+++ |+|+|||+++||||||+|+|.+..++..+ +.+||++|++|++|+++|+.+|
T Consensus 1 ~yd~~~t~fsp~Grl~QvEya~~av~~-Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD 79 (241)
T 1ryp_D 1 GYDRALSIFSPDGHIFQVEYALEAVKR-GTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNAD 79 (241)
T ss_dssp CCCCCCSCCBTTTBCHHHHHHHHHHTT-SCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEETTEEEEEEECHHH
T ss_pred CCCCCceeECCCCcchHHHHHHHHHHc-CCCEEEEEeCCEEEEEEeeccCccCccccCCcCcEEEecCCEEEEEeecHHH
Confidence 699999999999999999999999995 99999999999999999999996655554 8999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhhhhccCCCCCccceeEEEEEeCC-CCcEEEEEcCCceeeeeeE
Q 025892 87 ARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEE-KGPQLYKCDPAGHFFGHKA 165 (246)
Q Consensus 87 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~-~gp~Ly~id~~G~~~~~~~ 165 (246)
++.|.++++.+++.|+++++++|+++.+++++++++|.|++++++|||++++||||||++ +||+||.+||+|++.++++
T Consensus 80 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~ 159 (241)
T 1ryp_D 80 SRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSA 159 (241)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCTTCCSCEEEEECTTSCEEEBSE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHccCCCCCCcceeeEEEEEcCCCCCeeEEEECCCCCEEEeee
Confidence 999999999999999999999999999999999999999998889999999999999975 7899999999999999999
Q ss_pred EEecCChHHHHHHHHhhccC-CCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEeCCceEEEcCHHHHHHHHHHhhc
Q 025892 166 TSAGLKEQEAINFLEKKMKN-DPAFSYEETVQTAVSALQSVLQEDFKATEIEVGVVRSDDRVFRVLSSEEIDEHLTAISE 244 (246)
Q Consensus 166 ~a~G~g~~~~~~~Le~~~~~-~~~~s~~ea~~l~~~al~~~~~~d~~~~~iei~iv~~~~~~~~~l~~~ei~~~~~~i~~ 244 (246)
+|+|+|+++++++||++|.. +++||++||++++++||..+.+ .+.++++|++|+++++ |+.++++||++++.++.+
T Consensus 160 ~aiG~gs~~a~~~Le~~~~~~~~~ms~eea~~l~~~al~~~~~--~sg~~i~v~vi~~~~~-~~~l~~~ei~~~~~~~~~ 236 (241)
T 1ryp_D 160 QTIGRNSKTVREFLEKNYDRKEPPATVEECVKLTVRSLLEVVQ--TGAKNIEITVVKPDSD-IVALSSEEINQYVTQIEQ 236 (241)
T ss_dssp EEESTTHHHHHHHHHTTCCTTSCCCSHHHHHHHHHHHHHHHHC--SCSTTEEEEEEETTTE-EEECCHHHHHHHHHHHTH
T ss_pred EEECCCcHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHhc--CCCCcEEEEEEECCCc-EEECCHHHHHHHHHHHhh
Confidence 99999999999999999632 7899999999999999999985 5556899999999874 999999999999998865
Q ss_pred c
Q 025892 245 R 245 (246)
Q Consensus 245 ~ 245 (246)
+
T Consensus 237 ~ 237 (241)
T 1ryp_D 237 E 237 (241)
T ss_dssp H
T ss_pred h
Confidence 3
No 8
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=100.00 E-value=7.7e-63 Score=423.35 Aligned_cols=235 Identities=30% Similarity=0.510 Sum_probs=221.0
Q ss_pred CCccccceeCCCCcchhhhhHHHHHhccCceEEEEEcCCeEEEEEeccCCCcccc-cCCceeeEEecCcEEEEEecchHH
Q 025892 8 GYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLD-QTCVTHLFPITKYLGLLATGNTAD 86 (246)
Q Consensus 8 ~yd~~~t~fsp~Gri~Q~eya~~av~~~G~tvigi~~~dgVvlaad~~~~~~l~~-~~~~~Ki~~i~~~i~~~~sG~~~D 86 (246)
+||+++|+|||||||||+|||.+|+++ |+|+|||+++||||||+|+|.+..++. .++.+||++|++|++|++||+.+|
T Consensus 4 ~yd~~~t~fsp~Grl~QvEYA~~av~~-Gtt~vgi~~~dgVVlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD 82 (261)
T 1iru_C 4 RYDSRTTIFSPEGRLYQVEYAMEAIGH-AGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSD 82 (261)
T ss_dssp TTCCCTTCCCTTSCCHHHHHHHHHHTT-SCCEEEEBCSSEEEEEECCCCCCTTBCCCSSCSSEEECSSSEEEEEEECHHH
T ss_pred ccCCCCccCCCCCeehHHHhHHHHHhc-CCcEEEEEeCCEEEEEEecccCCcccccCCCCccEEEecCCEEEEEeEcHHH
Confidence 899999999999999999999999995 999999999999999999999955554 445899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCceeeeeeEE
Q 025892 87 ARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKAT 166 (246)
Q Consensus 87 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~~~~ 166 (246)
++.|.++++.+++.|+++++++++++.+++++++++|.|+++.++|||++++||||||+.+||+||.+||+|++.+++++
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~ 162 (261)
T 1iru_C 83 ANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKAT 162 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEETTTEEEEEEEETTTEEEECSEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcCcceEEEEEEEEeCCCCcEEEEECCCceEEeeeeE
Confidence 99999999999999999999999999999999999999999989999999999999996578999999999999999999
Q ss_pred EecCChHHHHHHHHhhccCCC-CCCHHHHHHHHHHHHHHhhhccCCCC-cEEEEEEEeCCc--eEEEcCHHHHHHHHHHh
Q 025892 167 SAGLKEQEAINFLEKKMKNDP-AFSYEETVQTAVSALQSVLQEDFKAT-EIEVGVVRSDDR--VFRVLSSEEIDEHLTAI 242 (246)
Q Consensus 167 a~G~g~~~~~~~Le~~~~~~~-~~s~~ea~~l~~~al~~~~~~d~~~~-~iei~iv~~~~~--~~~~l~~~ei~~~~~~i 242 (246)
|+|+|+++++++||+.| ++ +||++||++++++||..+.++|..++ +++|++|+++++ .|++++++||++++..+
T Consensus 163 aiGsgs~~a~~~Le~~~--~~~~ms~eeA~~la~~al~~~~~~d~~sg~~i~v~vi~~~~~~~~~~~l~~~ei~~~l~~~ 240 (261)
T 1iru_C 163 CIGNNSAAAVSMLKQDY--KEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLIKKH 240 (261)
T ss_dssp EESTTTTHHHHHHHHHC--CTTCCCHHHHHHHHHHHHHHSSSCTTCCSTTCEEEEEECCSSSCEEEECCHHHHHHHHHHH
T ss_pred EeCcccHHHHHHHHHhh--ccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEcCCCeeeEEECCHHHHHHHHHHH
Confidence 99999999999999996 67 99999999999999999999987654 899999999875 38999999999999998
Q ss_pred hcc
Q 025892 243 SER 245 (246)
Q Consensus 243 ~~~ 245 (246)
.++
T Consensus 241 ~~~ 243 (261)
T 1iru_C 241 EEE 243 (261)
T ss_dssp HTT
T ss_pred Hhc
Confidence 643
No 9
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=100.00 E-value=9.7e-63 Score=418.21 Aligned_cols=236 Identities=31% Similarity=0.584 Sum_probs=217.5
Q ss_pred CCCCCCCCCccccceeCCCCcchhhhhHHHHHhccCceEEEEEcCCeEEEEEeccCCCcccccCCceeeEEecCcEEEEE
Q 025892 1 MSRGSGAGYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLA 80 (246)
Q Consensus 1 ~~~~~~~~yd~~~t~fsp~Gri~Q~eya~~av~~~G~tvigi~~~dgVvlaad~~~~~~l~~~~~~~Ki~~i~~~i~~~~ 80 (246)
|-|+. ++||+++|+|||||||||+|||.+|+++ |+|+|||+++||||||+|+|.+.+++..++.+||++|++|++|++
T Consensus 1 ~~m~~-~~yd~~~t~fsp~Grl~QvEya~~av~~-Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~Ki~~i~~~i~~~~ 78 (241)
T 1iru_E 1 MFLTR-SEYDRGVNTFSPEGRLFQVEYDIEAIKL-GSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAM 78 (241)
T ss_dssp --------CCCCTTCBCTTSCBHHHHHHHHHHTT-SCCEEEEEETTEEEEEEECCCCCTTBCTTSCCSEEEEETTEEEEE
T ss_pred CCCcc-CCCCCCCceECCCCccHHHHHHHHHHHc-CCcEEEEEcCCEEEEEEecccCCcCcCccccceEEEEcCCEEEEE
Confidence 44443 5899999999999999999999999995 999999999999999999999966666888999999999999999
Q ss_pred ecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhhhhccCC-----CCCccceeEEEEEeCCCCcEEEEEc
Q 025892 81 TGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAY-----MRPLGVVAMVLGIDEEKGPQLYKCD 155 (246)
Q Consensus 81 sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~-----~rP~~v~~iv~G~D~~~gp~Ly~id 155 (246)
||+.+|++.|.++++.+++.|+++++++++++.+++++++++|.|+++.+ .|||++++||||||+ +||+||.+|
T Consensus 79 aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~y~~~~~~~~l~~rp~~v~~lvaG~D~-~gp~Ly~id 157 (241)
T 1iru_E 79 SGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDE-KGPQLFHMD 157 (241)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEET-TEEEEEEEC
T ss_pred eeChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccccccccccccceEEEEEEEEeC-CCCEEEEEC
Confidence 99999999999999999999999999999999999999999999998877 899999999999994 899999999
Q ss_pred CCceeeeeeEEEecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEeCCceEEEcCHHHH
Q 025892 156 PAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFSYEETVQTAVSALQSVLQEDFKATEIEVGVVRSDDRVFRVLSSEEI 235 (246)
Q Consensus 156 ~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~s~~ea~~l~~~al~~~~~~d~~~~~iei~iv~~~~~~~~~l~~~ei 235 (246)
|+|++.+++++|+|+|+++++++||+.| +++||++||++++++||..+.+|+.+..+++|++|+++++ |++++++||
T Consensus 158 p~G~~~~~~~~aiGsgs~~a~~~Le~~~--~~~ms~eea~~la~~al~~~~~~~~sg~~i~v~vi~~~~~-~~~l~~~ei 234 (241)
T 1iru_E 158 PSGTFVQCDARAIGSASEGAQSSLQELY--HKSMTLKEAIKSSLIILKQVMEEKLNATNIELATVQPGQN-FHMFTKEEL 234 (241)
T ss_dssp TTSCEEEBSEEEESTTHHHHHHHHHHHC--CTTCCHHHHHHHHHHHHHHHCSSCCCTTSEEEEEECSSSC-CEECCHHHH
T ss_pred CCCcEEecceEEECCCcHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEEECCCC-eEECCHHHH
Confidence 9999999999999999999999999996 7899999999999999999999854555899999999987 999999999
Q ss_pred HHHHHHh
Q 025892 236 DEHLTAI 242 (246)
Q Consensus 236 ~~~~~~i 242 (246)
++++++|
T Consensus 235 ~~~~~~~ 241 (241)
T 1iru_E 235 EEVIKDI 241 (241)
T ss_dssp HHHHTTC
T ss_pred HHHHHhC
Confidence 9998754
No 10
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=100.00 E-value=8.8e-63 Score=421.42 Aligned_cols=237 Identities=32% Similarity=0.470 Sum_probs=221.7
Q ss_pred CCCCCCccccceeCCCCcchhhhhHHHHHhccCceEEEEEcCCeEEEEEeccCCCcccccCCceeeEEecCcEEEEEecc
Q 025892 4 GSGAGYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGN 83 (246)
Q Consensus 4 ~~~~~yd~~~t~fsp~Gri~Q~eya~~av~~~G~tvigi~~~dgVvlaad~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~ 83 (246)
|++++||+++|+|||||||||+|||.+|+++ |+|+|||+++||||||+|+|.+.+++..++.+||++|++|++|+++|+
T Consensus 2 ~~~~~yd~~~t~fsp~Grl~QvEyA~~av~~-Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~KI~~i~~~i~~~~aG~ 80 (254)
T 1iru_G 2 SIGTGYDLSASTFSPDGRVFQVEYAMKAVEN-SSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGL 80 (254)
T ss_dssp CCCSSTTSCTTCCCTTSCCHHHHHHHHHHHT-SCCEEEEECSSBEEEEEEEECSCTTBCTTTTCCEEEEETTEEEEEEEC
T ss_pred CcccccCCCCccCCcCCccHHHHhHHHHHhc-CCCEEEEEECCEEEEEEecccCCCCcCcCcCCcEEEECCCEEEEEecC
Confidence 4577999999999999999999999999995 999999999999999999999976666788999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCceeeee
Q 025892 84 TADARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGH 163 (246)
Q Consensus 84 ~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~ 163 (246)
.+|++.|.++++.+++.|+++++++|+++.+++++++++|.|++++++|||++++||||||+.+||+||.+||+|++.++
T Consensus 81 ~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~ 160 (254)
T 1iru_G 81 LADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGY 160 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEETTTEEEEEEECTTCCEEEB
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccccccccceEEEEEEEEeCCCCcEEEEEcCCCCEEee
Confidence 99999999999999999999999999999999999999999999988999999999999995578999999999999999
Q ss_pred eEEEecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCCC-cEEEEEEEeCCc-eEEEcCHHHHHHHHHH
Q 025892 164 KATSAGLKEQEAINFLEKKMKNDPAFSYEETVQTAVSALQSVLQEDFKAT-EIEVGVVRSDDR-VFRVLSSEEIDEHLTA 241 (246)
Q Consensus 164 ~~~a~G~g~~~~~~~Le~~~~~~~~~s~~ea~~l~~~al~~~~~~d~~~~-~iei~iv~~~~~-~~~~l~~~ei~~~~~~ 241 (246)
+++|+|+|+++++++||++| +++|+++||++++++||+.+.+++..++ +++|++|+++.+ .|+.++++||+++++.
T Consensus 161 ~~~aiGsgs~~a~~~Le~~~--~~~ms~eea~~la~~al~~~~~~~~~~~~~iev~vi~~~~~g~~~~l~~~~i~~~~~~ 238 (254)
T 1iru_G 161 WGCAIGKARQAAKTEIEKLQ--MKEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGRHEIVPKDIREEAEKY 238 (254)
T ss_dssp SEEEESTTHHHHHHHHTTSC--GGGCCHHHHHHHHHHHHHHHSCSSSSCCEEEEEEECBTTTTTCCEECCHHHHHHHHHH
T ss_pred eeEEecCccHHHHHHHHHhc--cCCCCHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEEcCCCCCeEECCHHHHHHHHHH
Confidence 99999999999999999985 6799999999999999999988776444 799999998732 4999999999999986
Q ss_pred hh
Q 025892 242 IS 243 (246)
Q Consensus 242 i~ 243 (246)
+.
T Consensus 239 ~~ 240 (254)
T 1iru_G 239 AK 240 (254)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 11
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=100.00 E-value=2.9e-62 Score=416.42 Aligned_cols=231 Identities=35% Similarity=0.616 Sum_probs=218.9
Q ss_pred CCccccceeCCCCcchhhhhHHHHHhccCceEEEEEcCCeEEEEEeccCCCcccccCCceeeEEecCcEEEEEecchHHH
Q 025892 8 GYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGNTADA 87 (246)
Q Consensus 8 ~yd~~~t~fsp~Gri~Q~eya~~av~~~G~tvigi~~~dgVvlaad~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~ 87 (246)
+||+++|+|||||||||+|||.+|+++ |+|+|||+++||||||+|+|.+++++..++.+||++|++|++|+++|+.+|+
T Consensus 7 ~yd~~~t~fsp~Grl~QvEya~~av~~-Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~KI~~i~~~i~~~~aG~~aD~ 85 (246)
T 1j2p_A 7 GYDRAITVFSPDGRLFQVEYAREAVKR-GATAIGIKCKEGVILIADKRVGSKLLEKDTIEKIYKIDEHICAATSGLVADA 85 (246)
T ss_dssp TSSSCTTCCCTTSCCHHHHHHHHHHHT-SCCEEEEEETTEEEEEEECCCSCTTBCGGGCCSEEECSSSEEEEEEECHHHH
T ss_pred CcCCCCceECCCCeehHHHhHHHHHHc-CCcEEEEEECCEEEEEEeccCCccccccCccCcEEEECCCEEEEEeEccHHH
Confidence 899999999999999999999999995 9999999999999999999999878888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCceeeeeeEEE
Q 025892 88 RSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATS 167 (246)
Q Consensus 88 ~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~~~~a 167 (246)
+.|.+.++.+++.|+++++++++++.+++++++.+|.|+++.+.|||++++|||||| +||+||.+||+|++.+++++|
T Consensus 86 ~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D--~gp~Ly~idp~G~~~~~~~~a 163 (246)
T 1j2p_A 86 RVLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVN--EVPKLYETDPSGALLEYKATA 163 (246)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEES--SSEEEEEECTTCCEEEBSEEE
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCcccccEEEEEEEEC--CCCEEEEECCCceEEeeeEEE
Confidence 999999999999999999999999999999999999999998999999999999999 689999999999999999999
Q ss_pred ecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEE-eCCceEEEcCHHHHHHHHHHhhc
Q 025892 168 AGLKEQEAINFLEKKMKNDPAFSYEETVQTAVSALQSVLQEDFKATEIEVGVVR-SDDRVFRVLSSEEIDEHLTAISE 244 (246)
Q Consensus 168 ~G~g~~~~~~~Le~~~~~~~~~s~~ea~~l~~~al~~~~~~d~~~~~iei~iv~-~~~~~~~~l~~~ei~~~~~~i~~ 244 (246)
+|+|+++++++||+.| +++||++||++++++||..+.++..+.++++|++|+ +++ +|+.++++||+++++++.+
T Consensus 164 iGsgs~~a~~~Le~~~--~~~ms~eea~~la~~al~~~~~~~~sg~~i~v~vi~~~~~-~~~~l~~~ei~~~~~~~~~ 238 (246)
T 1j2p_A 164 IGMGRMAVTEFFEKEY--RDDLSFDDAMVLGLVAMGLSIESELVPENIEVGYVKVDDR-TFKEVSPEELKPYVERANE 238 (246)
T ss_dssp ESTTHHHHHHHHHHHC--CTTCCHHHHHHHHHHHHHHHHTSCCCGGGEEEEEEETTTC-CCEECCHHHHHHHHHHHHH
T ss_pred ECCCcHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEEEcCCC-ceEECCHHHHHHHHHHHHH
Confidence 9999999999999996 689999999999999999999883333589999999 655 4999999999999998753
No 12
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=100.00 E-value=1.2e-62 Score=419.17 Aligned_cols=231 Identities=36% Similarity=0.589 Sum_probs=219.7
Q ss_pred CccccceeCCCCcchhhhhHHHHHhccCceEEEEEcCCeEEEEEeccCCCcccccCCceeeEEecCcEEEEEecchHHHH
Q 025892 9 YDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGNTADAR 88 (246)
Q Consensus 9 yd~~~t~fsp~Gri~Q~eya~~av~~~G~tvigi~~~dgVvlaad~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~ 88 (246)
||+++|+|||||||||+|||.+|+++ |+|+|||+++||||||+|+|.+.+++..++.+||++|++|++|+++|+.+|++
T Consensus 3 yd~~~t~fsp~Grl~QvEYA~~av~~-Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~ 81 (248)
T 1iru_D 3 YDRAITVFSPDGHLFQVEYAQEAVKK-GSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADAR 81 (248)
T ss_dssp CCCCCSCCCTTSCCHHHHHHHHHHHT-SCCEEEECCSSEEEEEECCCCCCSSSCGGGGCSEEESSSSCEEEEEECHHHHH
T ss_pred ccCCCceECCCCcchHHHHHHHHHHc-CCCEEEEEeCCEEEEEEeecccccCccCCCCCcEEEEcCCEEEEEeecHHHHH
Confidence 99999999999999999999999995 99999999999999999999997788888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCceeeeeeEEEe
Q 025892 89 SLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSA 168 (246)
Q Consensus 89 ~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~~~~a~ 168 (246)
.|.++++.+++.|+++++++++++.+++++++++|.|+++++.|||++++||||||+++||+||.+||+|++.+++++|+
T Consensus 82 ~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~ai 161 (248)
T 1iru_D 82 IVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAI 161 (248)
T ss_dssp HHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECSSSCEEEEEECTTSCEEEBSEEEE
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCcccccEEEEEEEEeCCCCcEEEEEcCCCcEEEeeEEEE
Confidence 99999999999999999999999999999999999999998899999999999999557999999999999999999999
Q ss_pred cCChHHHHHHHHhhccCCCCC--CHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEeCCceEEEcCHHHHHHHHHHhhcc
Q 025892 169 GLKEQEAINFLEKKMKNDPAF--SYEETVQTAVSALQSVLQEDFKATEIEVGVVRSDDRVFRVLSSEEIDEHLTAISER 245 (246)
Q Consensus 169 G~g~~~~~~~Le~~~~~~~~~--s~~ea~~l~~~al~~~~~~d~~~~~iei~iv~~~~~~~~~l~~~ei~~~~~~i~~~ 245 (246)
|+|++.++++||++| +++| |++||++++++||..+.+ .+.++++|++|+++++ |+.++++||++++..+.++
T Consensus 162 G~gs~~a~~~Le~~~--~~~m~~s~eea~~la~~al~~~~~--~sg~~i~v~vi~~~g~-~~~l~~~ei~~~~~~~~~~ 235 (248)
T 1iru_D 162 GRGAKSVREFLEKNY--TDEAIETDDLTIKLVIKALLEVVQ--SGGKNIELAVMRRDQS-LKILNPEEIEKYVAEIEKE 235 (248)
T ss_dssp STTHHHHHHHHTTTC--CSSTTCSHHHHHHHHHHHHHTTSC--TTSTTCCEEEEESSSC-EECCCHHHHHHHTTTTTTT
T ss_pred CCCcHHHHHHHHHhh--cccccCCHHHHHHHHHHHHHHHHc--CCCCcEEEEEEECCCc-EEECCHHHHHHHHHHHHhc
Confidence 999999999999995 6899 999999999999999886 4445899999999885 9999999999999988654
No 13
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=100.00 E-value=3e-62 Score=415.41 Aligned_cols=232 Identities=28% Similarity=0.525 Sum_probs=219.7
Q ss_pred ccccceeCCCCcchhhhhHHHHHhccCceEEEEEcCCeEEEEEeccCCCcccccCCceeeEEecCcEEEEEecchHHHHH
Q 025892 10 DRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGNTADARS 89 (246)
Q Consensus 10 d~~~t~fsp~Gri~Q~eya~~av~~~G~tvigi~~~dgVvlaad~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~ 89 (246)
|+++|+|||||||||+|||.+|+++ |+|+|||+++||||||+|+|.+.+++.+++.+||++|++|++|++||+.+|++.
T Consensus 1 d~~~t~fsp~Grl~QvEyA~~av~~-Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~ 79 (242)
T 1ryp_E 1 DRGVSTFSPEGRLFQVEYSLEAIKL-GSTAIGIATKEGVVLGVEKRATSPLLESDSIEKIVEIDRHIGCAMSGLTADARS 79 (242)
T ss_dssp CCCTTCBCTTSCBHHHHHHHHHHTT-SCCEEEEECSSCEEEEEECCCSSTTBCGGGCCCEEEEETTEEEEEEESGGGHHH
T ss_pred CCCCceECCCCcChHHHhHHHHHHc-CCCEEEEEECCEEEEEEeecCCCcCccCccCCceEEEcCCEEEEEeecHHHHHH
Confidence 7899999999999999999999995 999999999999999999999976666888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhhhhccCC------CCCccceeEEEEEeCCCCcEEEEEcCCceeeee
Q 025892 90 LVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAY------MRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGH 163 (246)
Q Consensus 90 l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~------~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~ 163 (246)
|.++++.+++.|+++++++++++.+++++++++|.||++.+ .|||++++||||||+.+||+||.+||+|++.++
T Consensus 80 l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~~~~l~~RP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~ 159 (242)
T 1ryp_E 80 MIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRY 159 (242)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEETTTEEEEEEECTTSCEEEB
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccccccCcceEEEEEEEEeCCCCCEEEEECCCCCEecc
Confidence 99999999999999999999999999999999999999887 899999999999996578999999999999999
Q ss_pred eEEEecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEeCCceEEEcCHHHHHHHHHHhh
Q 025892 164 KATSAGLKEQEAINFLEKKMKNDPAFSYEETVQTAVSALQSVLQEDFKATEIEVGVVRSDDRVFRVLSSEEIDEHLTAIS 243 (246)
Q Consensus 164 ~~~a~G~g~~~~~~~Le~~~~~~~~~s~~ea~~l~~~al~~~~~~d~~~~~iei~iv~~~~~~~~~l~~~ei~~~~~~i~ 243 (246)
+++|+|+|+++++++||++| +++||++||++++++||..+.+|+.+..+++|++|+++++ |++++++||+++++++.
T Consensus 160 ~~~aiGsgs~~a~~~Le~~~--~~~ms~eea~~la~~al~~~~~~~~sg~~i~v~vi~~~~~-~~~~~~~ei~~~~~~~~ 236 (242)
T 1ryp_E 160 NAKAIGSGSEGAQAELLNEW--HSSLTLKEAELLVLKILKQVMEEKLDENNAQLSCITKQDG-FKIYDNEKTAELIKELK 236 (242)
T ss_dssp SEEEESTTHHHHHHHHHHHC--CTTCCHHHHHHHHHHHHHHHCSSCCCTTSEEEEEEETTTE-EEECCHHHHHHHHHHHH
T ss_pred CEEEECCCCHHHHHHHHHhh--ccCCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC-eEECCHHHHHHHHHHHh
Confidence 99999999999999999996 7899999999999999999999855556899999999986 99999999999999887
Q ss_pred cc
Q 025892 244 ER 245 (246)
Q Consensus 244 ~~ 245 (246)
++
T Consensus 237 ~~ 238 (242)
T 1ryp_E 237 EK 238 (242)
T ss_dssp HH
T ss_pred hh
Confidence 53
No 14
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=100.00 E-value=6.1e-62 Score=415.40 Aligned_cols=232 Identities=32% Similarity=0.532 Sum_probs=220.2
Q ss_pred CCccccceeCCCCcchhhhhHHHHHhccCceEEEEEcCCeEEEEEeccCCCcccccCCceeeEEecCcEEEEEecchHHH
Q 025892 8 GYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGNTADA 87 (246)
Q Consensus 8 ~yd~~~t~fsp~Gri~Q~eya~~av~~~G~tvigi~~~dgVvlaad~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~ 87 (246)
+||+++|+|||||||||+|||.+|+++ |+|+|||+++||||||+|+|.+++++.+++.+||++|++|++|++||+.+|+
T Consensus 4 ~yd~~~t~fsp~Grl~QvEyA~~av~~-Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~ 82 (250)
T 1ryp_B 4 RYSFSLTTFSPSGKLGQIDYALTAVKQ-GVTSLGIKATNGVVIATEKKSSSPLAMSETLSKVSLLTPDIGAVYSGMGPDY 82 (250)
T ss_dssp CCCSBSSCBCTTSCBHHHHHHHHHHHT-SCCEEEEEETTEEEEEEECCCSCSSBCGGGCCSSEEEETTEEEEEEECHHHH
T ss_pred cccCCceeECCCCccHHHHhHHHHHHc-CCcEEEEEECCEEEEEEeccCCCccccCcccCceEEECCCEEEEeeeCHHHH
Confidence 899999999999999999999999995 9999999999999999999999889888999999999999999999999999
Q ss_pred HHHHHHHHHHHHH-HHHHcCCCCCHHHHHHHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCceeeeeeEE
Q 025892 88 RSLVHQARNEAAE-YRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKAT 166 (246)
Q Consensus 88 ~~l~~~~~~~~~~-~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~~~~ 166 (246)
+.|.++++.+++. |+..++++++++.+++.++++++.|+++.++|||++++||||||+.+||+||.+||+|++.+++++
T Consensus 83 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~ 162 (250)
T 1ryp_B 83 RVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKAT 162 (250)
T ss_dssp HHHHHHHHHHHHHTTHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCCEEEEEEEEETTTEEEEEEECTTSCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcccceEEEEEEEEcCCCCcEEEEECCCCCEEeecee
Confidence 9999999999999 999999999999999999999999999888999999999999997678999999999999999999
Q ss_pred EecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEeC--------------CceEEEcCH
Q 025892 167 SAGLKEQEAINFLEKKMKNDPAFSYEETVQTAVSALQSVLQEDFKATEIEVGVVRSD--------------DRVFRVLSS 232 (246)
Q Consensus 167 a~G~g~~~~~~~Le~~~~~~~~~s~~ea~~l~~~al~~~~~~d~~~~~iei~iv~~~--------------~~~~~~l~~ 232 (246)
|+|+|+++++++||+.| +++||++||++++++||..+.+++.+.++++|++|+++ ++.|+++++
T Consensus 163 aiGsgs~~a~~~Le~~~--~~~ms~eea~~la~~al~~~~~~~~sg~~i~v~vi~~~~~~~~~~~~~~~~~~~~~~~l~~ 240 (250)
T 1ryp_B 163 AIGKGSVAAKTFLEKRW--NDELELEDAIHIALLTLKESVEGEFNGDTIELAIIGDENPDLLGYTGIPTDKGPRFRKLTS 240 (250)
T ss_dssp EESTTHHHHHHHHHHHC--CTTCCHHHHHHHHHHHHHHHCCSCCSTTTEEEEEECSCCGGGTSEESCSSCCCCSEEECCH
T ss_pred EecCccHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHHHhccccCCCCEEEEEEEccccccccccccccCCCCCeEECCH
Confidence 99999999999999996 68999999999999999999988776569999999986 235999999
Q ss_pred HHHHHHHHHh
Q 025892 233 EEIDEHLTAI 242 (246)
Q Consensus 233 ~ei~~~~~~i 242 (246)
+||+++++++
T Consensus 241 ~ei~~~l~~~ 250 (250)
T 1ryp_B 241 QEINDRLEAL 250 (250)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHHhC
Confidence 9999998754
No 15
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=100.00 E-value=5.2e-62 Score=422.20 Aligned_cols=233 Identities=29% Similarity=0.485 Sum_probs=214.4
Q ss_pred CCCCCCccccceeCCCCcchhhhhHHHHHhccCceEEEEEcCCeEEEEEeccCCCcccccCCceeeEEecCcEEEEEecc
Q 025892 4 GSGAGYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGN 83 (246)
Q Consensus 4 ~~~~~yd~~~t~fsp~Gri~Q~eya~~av~~~G~tvigi~~~dgVvlaad~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~ 83 (246)
|++++||+++|+|||||||||||||.+|+++ |+|+|||+++||||||+|+|.+++++..+..+||++|++|++|+++|+
T Consensus 3 ~~~~~yd~~~t~fSP~Grl~QvEYA~kAv~~-GtT~Vgik~kdGVVlAaD~r~t~gl~~~~~~~KI~~I~d~i~~~~aG~ 81 (288)
T 3nzj_F 3 SIGTGYDLSNSVFSPDGRNFQVEYAVKAVEN-GTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGCVYSGL 81 (288)
T ss_dssp --CCCTTSSTTCCCTTSCCHHHHHHHHHHHT-SCCEEEEEETTEEEEEEEEEECCTTBCTTCSCCCEEETTTEEEEEEEC
T ss_pred CCcCCccCCcccCCCCCchHHHHHHHHHHhc-CCcEEEEEECCEEEEEEcCCcccCCccccccceEEEEcCCEEEEecCc
Confidence 4589999999999999999999999999995 999999999999999999999977766668899999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCceeeee
Q 025892 84 TADARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGH 163 (246)
Q Consensus 84 ~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~ 163 (246)
.+|++.|+++++.+++.|+++++++|+++.++++|++++|.||+++++|||+|++||||||+ .||+||++||+|++.++
T Consensus 82 ~aD~~~l~~~lr~e~~~y~~~~~~~i~v~~lA~~l~~~l~~yt~~~~~rP~gv~~lvaG~D~-~Gp~Ly~iDp~G~~~~~ 160 (288)
T 3nzj_F 82 IPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDK-NGAHLYMLEPSGSYWGY 160 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEET-TEEEEEEECTTSCEEEB
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEEEEeC-CCCEEEEECCCCCEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999997 78999999999999999
Q ss_pred eEEEecCChHHHHHHHHhhcc-CCCCCCHHHHHHHHHHHHHHhhhccCCCC-cEEEEEEEe--CCceEEEcCHHHHHHH
Q 025892 164 KATSAGLKEQEAINFLEKKMK-NDPAFSYEETVQTAVSALQSVLQEDFKAT-EIEVGVVRS--DDRVFRVLSSEEIDEH 238 (246)
Q Consensus 164 ~~~a~G~g~~~~~~~Le~~~~-~~~~~s~~ea~~l~~~al~~~~~~d~~~~-~iei~iv~~--~~~~~~~l~~~ei~~~ 238 (246)
+++|+|+|++.++++||++++ |+++||++||++++++||..+.+++..++ .++|++|++ +++.++.++.+++++.
T Consensus 161 ~~~aiGsgs~~a~~~Lek~~~~~~~~ms~eEAv~la~~al~~a~~~~~~~~~~iev~vIt~~~~~~~~~~vp~~~~~~~ 239 (288)
T 3nzj_F 161 KGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKGDLLQEA 239 (288)
T ss_dssp SEEEESTTHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHGGGGTTSEEEEEEEEEETTTSTTCCEECCHHHHHHH
T ss_pred CEEEEcCcHHHHHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEEecCCCceEEECCHHHHHHH
Confidence 999999999999999999943 47899999999999999999999876554 899999998 3444566666666654
No 16
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=100.00 E-value=2.9e-62 Score=420.00 Aligned_cols=233 Identities=30% Similarity=0.549 Sum_probs=219.3
Q ss_pred CCCccccceeCCCCcchhhhhHHHHHhccCceEEEEEcCCeEEEEEeccCCCcccccCCceeeEEecCcEEEEEecchHH
Q 025892 7 AGYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGNTAD 86 (246)
Q Consensus 7 ~~yd~~~t~fsp~Gri~Q~eya~~av~~~G~tvigi~~~dgVvlaad~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D 86 (246)
.+||+++|+|||||||||+|||.+|+++ |+|+|||+++||||||+|+|.+.++. ++.+||++|++|++|++||+.+|
T Consensus 4 ~~yd~~~t~fsP~Grl~QvEYA~~av~~-Gtt~vgi~~~dgVVlaaD~r~~~gl~--~~~~KI~~i~~~i~~~~aG~~aD 80 (263)
T 1iru_F 4 NQYDNDVTVWSPQGRIHQIEYAMEAVKQ-GSATVGLKSKTHAVLVALKRAQSELA--AHQKKILHVDNHIGISIAGLTAD 80 (263)
T ss_dssp CTTTSCTTCCCTTSCCHHHHHHHHHHHH-SCCEEEEECSSEEEEEEECCCSSTTB--CCCCCEEEEETTEEEEEEECHHH
T ss_pred CCCCCCCccCCCCCeehHHHHHHHHHHc-CCcEEEEEeCCEEEEEEecccccccc--cchhcEEEEcCCEEEEEeCCHHH
Confidence 5899999999999999999999999995 99999999999999999999997764 47799999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCceeeeeeEE
Q 025892 87 ARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKAT 166 (246)
Q Consensus 87 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~~~~ 166 (246)
++.|.++++.+++.|+++++++++++.+++++++++|.|+|+++.|||++++||||||+ +||+||.+||+|++.+++++
T Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~t~~~~~RP~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~ 159 (263)
T 1iru_F 81 ARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDD-MGPHIFQTCPSANYFDCRAM 159 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEET-TEEEEEEECSSSCEEEESEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhcccccccceEEEEEEEEcC-CCCEEEEECCCCCEEEeeEE
Confidence 99999999999999999999999999999999999999999989999999999999997 78999999999999999999
Q ss_pred EecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhcc--CCCCcEEEEEEEeCCceEEEcCHHHHHHHHHHhhc
Q 025892 167 SAGLKEQEAINFLEKKMKNDPAFSYEETVQTAVSALQSVLQED--FKATEIEVGVVRSDDRVFRVLSSEEIDEHLTAISE 244 (246)
Q Consensus 167 a~G~g~~~~~~~Le~~~~~~~~~s~~ea~~l~~~al~~~~~~d--~~~~~iei~iv~~~~~~~~~l~~~ei~~~~~~i~~ 244 (246)
|+|+|+++++++||++|++.++||++||++++++||..+.+|| .+.++++|++|+++++ |+.++++||++++.++..
T Consensus 160 aiGsgs~~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~rd~~~sg~~iev~vi~~~~~-~~~l~~~ei~~~~~~~~~ 238 (263)
T 1iru_F 160 SIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLE-FTIYDDDDVSPFLEGLEE 238 (263)
T ss_dssp EESTTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCTTCCCCTTTEEEEEEETTEE-EEEECSGGGHHHHTTCCC
T ss_pred EcCcccHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHhccccCCCCcEEEEEEECCCC-eEECCHHHHHHHHHHHhc
Confidence 9999999999999999743248999999999999999999998 3445899999999864 999999999999998863
No 17
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=100.00 E-value=7.6e-61 Score=407.17 Aligned_cols=236 Identities=28% Similarity=0.467 Sum_probs=215.1
Q ss_pred CCCCccccceeCCCCcchhhhhHHHHHhccCceEEEEEcCCeEEEEEeccCCCcccccCCceeeEEecCcEEEEEecchH
Q 025892 6 GAGYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGNTA 85 (246)
Q Consensus 6 ~~~yd~~~t~fsp~Gri~Q~eya~~av~~~G~tvigi~~~dgVvlaad~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~ 85 (246)
+++||+++|+|||||||||+|||.+|+++ |+|+|||+++||||||+|+|.+.+++..+..+||++|++|++|++||+.+
T Consensus 1 ~~~yd~~~t~fsp~Grl~QvEya~~av~~-Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~KI~~i~~~i~~~~aG~~a 79 (244)
T 1ryp_G 1 GTGYDLSNSVFSPDGRNFQVEYAVKAVEN-GTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGCVYSGLIP 79 (244)
T ss_dssp CCCTTSSTTCCCTTSCCHHHHHHHHHHHT-SCCEEEEEETTEEEEEEEEECCCTTBCTTTSCCCEEETTTEEEEEEECHH
T ss_pred CCCccCCcccCCcCCchHHHHhHHHHHHC-CCCEEEEEECCEEEEEEecccCCCCccccccCceEEecCCEEEEEcccHH
Confidence 46899999999999999999999999995 99999999999999999999996666666669999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCceeeeeeE
Q 025892 86 DARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKA 165 (246)
Q Consensus 86 D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~~~ 165 (246)
|++.|.++++.+++.|+++++++++++.+++++++.+|.||+++++|||++++||||||+ +||+||.+||+|++.++++
T Consensus 80 D~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~ 158 (244)
T 1ryp_G 80 DGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDK-NGAHLYMLEPSGSYWGYKG 158 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEET-TEEEEEEECTTSCEEEBSE
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccCceEEEEEEEEeC-CcCEEEEECCCCCEEEeeE
Confidence 999999999999999999999999999999999999999999988999999999999996 7999999999999999999
Q ss_pred EEecCChHHHHHHHHhhcc-CCCCCCHHHHHHHHHHHHHHhhhccCCCC-cEEEEEEEe-CCceEEEcCHHHHHHHHHHh
Q 025892 166 TSAGLKEQEAINFLEKKMK-NDPAFSYEETVQTAVSALQSVLQEDFKAT-EIEVGVVRS-DDRVFRVLSSEEIDEHLTAI 242 (246)
Q Consensus 166 ~a~G~g~~~~~~~Le~~~~-~~~~~s~~ea~~l~~~al~~~~~~d~~~~-~iei~iv~~-~~~~~~~l~~~ei~~~~~~i 242 (246)
+|+|+|+++++++||+.++ |+++||++||++++++||..+.++|..++ +++|++|++ +..+++.+.|+++-+..++.
T Consensus 159 ~aiG~gs~~a~~~Le~~~~~~~~~ms~eea~~la~~al~~~~~~d~~s~~~iev~vi~~~~~~g~~~~~~~~~~~~~~~~ 238 (244)
T 1ryp_G 159 AATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKGDLLQEAIDF 238 (244)
T ss_dssp EEESTTHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHGGGGTTSCEEEEEEEEETTTTTTSEEECCTHHHHHHHHH
T ss_pred EEECCChHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEEecCCCCeeeeChHHHHHHHHHH
Confidence 9999999999999999721 36789999999999999999999988765 899999997 22237777777776665554
Q ss_pred h
Q 025892 243 S 243 (246)
Q Consensus 243 ~ 243 (246)
.
T Consensus 239 ~ 239 (244)
T 1ryp_G 239 A 239 (244)
T ss_dssp H
T ss_pred H
Confidence 3
No 18
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=100.00 E-value=7.4e-62 Score=410.84 Aligned_cols=226 Identities=27% Similarity=0.465 Sum_probs=211.8
Q ss_pred CCccccceeCCCCcchhhhhHHHHHhccCceEEEEEcCCeEEEEEeccCCCcccccCCceeeEEecCcEEEEEecchHHH
Q 025892 8 GYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGNTADA 87 (246)
Q Consensus 8 ~yd~~~t~fsp~Gri~Q~eya~~av~~~G~tvigi~~~dgVvlaad~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~ 87 (246)
+||+++|+|||||||||+|||.+|+++ |+|+|||+++||||||+|+|.+..+. ++.+||++|++|++|++||+.+|+
T Consensus 4 ~yd~~~t~fsp~Grl~QvEyA~~av~~-Gtt~vgi~~~dgVvlaaD~r~~~~l~--~~~~Ki~~i~~~i~~~~aG~~aD~ 80 (233)
T 1ryp_F 4 NYDGDTVTFSPTGRLFQVEYALEAIKQ-GSVTVGLRSNTHAVLVALKRNADELS--SYQKKIIKCDEHMGLSLAGLAPDA 80 (233)
T ss_dssp HHSSCTTCCCTTSCCHHHHHHHHHHHT-SCCEEEEECSSEEEEEEECCCSSTTB--CCCCCEEEEETTEEEEEEECHHHH
T ss_pred cccCCCccCCCCCeehHHHHHHHHHHc-CCCEEEEEcCCEEEEEEEeccccccc--cccCcEEEEcCCEEEEEEechHHH
Confidence 699999999999999999999999995 99999999999999999999997765 477999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCceeeeeeEEE
Q 025892 88 RSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATS 167 (246)
Q Consensus 88 ~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~~~~a 167 (246)
+.|.+.++.+++.|+++++++|+++.+++++++++|.|||+.+.|||++++||||||+ .||+||++||+|++.+++++|
T Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~a 159 (233)
T 1ryp_F 81 RVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDK-SGAHLLEFQPSGNVTELYGTA 159 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEET-TEEEEEEECTTSCEEEESEEE
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCCcCcceEEEEEEEeC-CcCEEEEECCCCCeeeeeEEE
Confidence 9999999999999999999999999999999999999999999999999999999997 789999999999999999999
Q ss_pred ecCChHHHHHHHHhhccCCCCC--CHHHHHHHHHHHHHHhhhcc-C-CCCcEEEEEEEeCCceEEEcCHHHHHHHH
Q 025892 168 AGLKEQEAINFLEKKMKNDPAF--SYEETVQTAVSALQSVLQED-F-KATEIEVGVVRSDDRVFRVLSSEEIDEHL 239 (246)
Q Consensus 168 ~G~g~~~~~~~Le~~~~~~~~~--s~~ea~~l~~~al~~~~~~d-~-~~~~iei~iv~~~~~~~~~l~~~ei~~~~ 239 (246)
+|+|++.++++||++|++.++| |++||++++++||..+. +| . +..+++|++|+++++ |+.++++||++++
T Consensus 160 iG~gs~~a~~~Le~~~~~~~~m~~s~eea~~~a~~al~~~~-~d~~~s~~~i~v~vi~~~~~-~~~l~~~ei~~~l 233 (233)
T 1ryp_F 160 IGARSQGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQSL-RDESLTVDNLSIAIVGKDTP-FTIYDGEAVAKYI 233 (233)
T ss_dssp ESTTHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHTTSC-CSSCCCTTTEEEEEEETTEE-EEEEEGGGGGGGC
T ss_pred ECCCcHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHh-hcccCCCCcEEEEEEECCCC-EEECCHHHHHhhC
Confidence 9999999999999997432389 99999999999999999 76 4 445899999999865 9999999998763
No 19
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=100.00 E-value=4.1e-52 Score=356.15 Aligned_cols=220 Identities=19% Similarity=0.244 Sum_probs=194.8
Q ss_pred cceeCCCCcch-hhhhHHHHHhccCceEEEEEcCCeEEEEEeccCCCcccccCCceeeEEecCcEEEEEecchHHHHHHH
Q 025892 13 ITIFSPEGRLF-QVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGNTADARSLV 91 (246)
Q Consensus 13 ~t~fsp~Gri~-Q~eya~~av~~~G~tvigi~~~dgVvlaad~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~ 91 (246)
+..|||||++. |+|||.+++++ |+|+|||+++||||||+|+| +++.+||++|++|++|+++|+.+|++.|.
T Consensus 4 p~~~sPe~~~~~qvEYA~~av~~-Gtt~vgi~~~dgVVlaaD~r-------s~~~~KI~~I~d~i~~~~aG~~aD~~~l~ 75 (259)
T 1q5q_A 4 PYYASAEQIMRDRSELARKGIAR-GRSVVVLTFRDGVLFVAENP-------STALHKVSELYDRLGFAAVGKYNEFENLR 75 (259)
T ss_dssp -----CHHHHHHHHHHHHHHHHT-SCCEEEEECSSEEEEEECCS-------CSSSCSEEEEETTEEEEEEECHHHHHHHH
T ss_pred CcccCHHHHHHHHHHHHHHHHhc-CCcEEEEEeCCEEEEEEecC-------CCCcCcEEEeCCCEEEEEccCHHHHHHHH
Confidence 34689999995 99999999995 99999999999999999999 36789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCC-CCCHHHHHHHHHH-HhhhhhccCCCCCccceeEEEEEe--C-CCCcEEEEEcCCceee-eeeE
Q 025892 92 HQARNEAAEYRFKFGY-EMPVDVLSRWIAD-KSQVYTQHAYMRPLGVVAMVLGID--E-EKGPQLYKCDPAGHFF-GHKA 165 (246)
Q Consensus 92 ~~~~~~~~~~~~~~~~-~~~~~~la~~l~~-~~~~~t~~~~~rP~~v~~iv~G~D--~-~~gp~Ly~id~~G~~~-~~~~ 165 (246)
++++.+++.|++.+++ +++++.++++|++ +.|.|+ .+.|||+|++|||||| + .+||+||++||+|++. ++++
T Consensus 76 ~~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~q~yt--~~~rP~~v~~lvaG~D~~~~~~gp~Ly~idp~G~~~~~~~~ 153 (259)
T 1q5q_A 76 RAGIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFT--EQPKPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQHF 153 (259)
T ss_dssp HHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHH--HSSSCCCEEEEEEECCCSSCCCCCEEEEEETTSCEEEESSE
T ss_pred HHHHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHhc--cCCCCceEEEEEEEEcccCCCCCCEEEEECCCCceeeCCCE
Confidence 9999999999999884 9999999999999 667787 3678999999999999 3 4799999999999999 7899
Q ss_pred EEecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhh-----hccCCCCcEEEEEEEeCC--ceEEEcCHHHHHHH
Q 025892 166 TSAGLKEQEAINFLEKKMKNDPAFSYEETVQTAVSALQSVL-----QEDFKATEIEVGVVRSDD--RVFRVLSSEEIDEH 238 (246)
Q Consensus 166 ~a~G~g~~~~~~~Le~~~~~~~~~s~~ea~~l~~~al~~~~-----~~d~~~~~iei~iv~~~~--~~~~~l~~~ei~~~ 238 (246)
+|+|++++.++++||++| +++|+++||++++++||..+. +||++..+++|++|++++ ++|+.++++||+++
T Consensus 154 ~aiG~gs~~a~~~Le~~~--~~~ms~eea~~la~~al~~~~~~~~~~rd~sg~~iev~vi~~~~~~~~~~~l~~~ei~~~ 231 (259)
T 1q5q_A 154 VVMGGTTEPIATAMRESY--RADLDLEAAVGIAVNALRQGGAGEGEKRNVDVASLEVAVLDQSRPRRAFRRIAGTALEQL 231 (259)
T ss_dssp EEESSSHHHHHHHHHHHC--CTTCCHHHHHHHHHHHHTTCC--------CCSSCSEEEEEETTSSSCCEEECCHHHHHTT
T ss_pred EEECCChHHHHHHHHhhc--cCCCCHHHHHHHHHHHHHHHhhcccccccCCCCcEEEEEEECCCCcCCeEECCHHHHHHH
Confidence 999999999999999995 789999999999999999998 888855589999999985 24999999999999
Q ss_pred HHHhhc
Q 025892 239 LTAISE 244 (246)
Q Consensus 239 ~~~i~~ 244 (246)
+..+.+
T Consensus 232 ~~~~~~ 237 (259)
T 1q5q_A 232 VPAEPA 237 (259)
T ss_dssp SCCC--
T ss_pred HHHhhh
Confidence 887754
No 20
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=100.00 E-value=3.3e-50 Score=341.70 Aligned_cols=208 Identities=18% Similarity=0.258 Sum_probs=187.6
Q ss_pred hhhhHHHHHhccCceEEEEEcCCeEEEEEeccCCCcccccCCceeeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHH
Q 025892 24 QVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRF 103 (246)
Q Consensus 24 Q~eya~~av~~~G~tvigi~~~dgVvlaad~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~ 103 (246)
++|||.||+++ |+|+|||+++||||||+|+| +++.+|||+|++|++|+++|+.+|++.|.+.++.+++.|++
T Consensus 16 r~EYA~~av~~-GtT~vgi~~kdgVVlaadkr-------~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~l~~~ 87 (248)
T 3mi0_A 16 RSELARKGIAR-AKSVVALAYAGGVLFVAENP-------SRSLQKISELYDRVGFAAAGKFNEFDNLRRGGIQFADTRGY 87 (248)
T ss_dssp HHHHHHHHHHT-SCCEEEEEETTEEEEEEECC-------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHhC-CCcEEEEEeCCEEEEEEeCC-------CCCCCCeEEECCCEEEEEccCHHHHHHHHHHHHHHHHHHHH
Confidence 68999999995 99999999999999999999 35789999999999999999999999999999999999999
Q ss_pred HcC-CCCCHHHHHHHHH-HHhhhhhccCCCCCccceeEEEEEeC---CCCcEEEEEcCCceeee-eeEEEecCChHHHHH
Q 025892 104 KFG-YEMPVDVLSRWIA-DKSQVYTQHAYMRPLGVVAMVLGIDE---EKGPQLYKCDPAGHFFG-HKATSAGLKEQEAIN 177 (246)
Q Consensus 104 ~~~-~~~~~~~la~~l~-~~~~~~t~~~~~rP~~v~~iv~G~D~---~~gp~Ly~id~~G~~~~-~~~~a~G~g~~~~~~ 177 (246)
.++ ++++++.|+++|+ .+.|.||| ++|||+|++||||||+ .+||+||++||+|++.+ ++++|+|+|++.+++
T Consensus 88 ~~~~~~i~v~~la~~l~~~l~q~yt~--~~rP~gv~~liaG~D~~~~~~gp~Ly~~Dp~G~~~~e~~~~a~Gsgs~~a~~ 165 (248)
T 3mi0_A 88 AYDRRDVTGRQLANVYAQTLGTIFTE--QAKPYEVELCVAEVAHYGETKRPELYRITYDGSIADEPHFVVMGGTTEPIAN 165 (248)
T ss_dssp HSCGGGCCHHHHHHHHHHHHHHHHHH--SSSCCCEEEEEEECCCTTCCCCCEEEEECTTSCEEEESSEEEESSCHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHHHHHhcc--CCCCceEEEEEEEEcCCCCCCCCEEEEECCCeEEeecccEEEECccHHHHHH
Confidence 999 8999999999999 77888987 6889999999999997 47999999999999995 999999999999999
Q ss_pred HHHhhccCCCCCCHHHHHHHHHHHHHHhh-------hccCCCCcEEEEEEEeCC--ceEEEcCHHHHHHHHHHhh
Q 025892 178 FLEKKMKNDPAFSYEETVQTAVSALQSVL-------QEDFKATEIEVGVVRSDD--RVFRVLSSEEIDEHLTAIS 243 (246)
Q Consensus 178 ~Le~~~~~~~~~s~~ea~~l~~~al~~~~-------~~d~~~~~iei~iv~~~~--~~~~~l~~~ei~~~~~~i~ 243 (246)
+||++| +++|+++||++++++||..+. ++++...+++|++|++++ +.|+.++++||++++.++.
T Consensus 166 ~Le~~y--~~~mt~eeai~la~~aL~~~~~~~~~~~~~~~~~~~iev~vv~~~g~~~~f~~l~~~ei~~~l~~~~ 238 (248)
T 3mi0_A 166 ALKESY--AENASLTDALRIAVAALRAGSADTSGGDQPTLGVASLEVAVLDANRPRRAFRRITGSALQALLVDQE 238 (248)
T ss_dssp HHHHHC--CTTCCHHHHHHHHHHHHHHC------------CCTTEEEEEEETTSSSCCEEECCHHHHHHTC----
T ss_pred HHHhhc--CCCCCHHHHHHHHHHHHHHHHhhcccCcccccCCCcEEEEEEECCCCcccEEECCHHHHHHHHHHcC
Confidence 999995 789999999999999999998 667777899999999985 4699999999999988764
No 21
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=4e-49 Score=329.98 Aligned_cols=202 Identities=25% Similarity=0.400 Sum_probs=189.4
Q ss_pred CceEEEEEcCCeEEEEEeccCC-CcccccCCceeeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Q 025892 36 AITSIGVRGKDSVCVVTQKKVP-DKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVL 114 (246)
Q Consensus 36 G~tvigi~~~dgVvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 114 (246)
|+|+|||+++||||||+|+|.+ +.++..++.+||++|++|++|+++|+.+|++.|.++++.+++.|+++++++++++.+
T Consensus 1 Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~l 80 (219)
T 3h4p_a 1 MTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLAC 80 (219)
T ss_dssp -CCEEEEEETTEEEEECCCCEEETTEEEETTCCCEEEEETTEEEECCSCHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHH
T ss_pred CccEEEEEECCEEEEEEcCCcccCCEeeccccceeEEecCCEEEEeeEcHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 7899999999999999999998 568888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCceeeeee-EEEecCChHHHHHHHHhhccCCCCCCHHH
Q 025892 115 SRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHK-ATSAGLKEQEAINFLEKKMKNDPAFSYEE 193 (246)
Q Consensus 115 a~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~~-~~a~G~g~~~~~~~Le~~~~~~~~~s~~e 193 (246)
++++++.+|.| +.|||++++||||||+.+||+||.+||+|++.+++ +.|+|+|+++++++||+.| +++||++|
T Consensus 81 a~~l~~~~~~~----~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~--~~~ms~ee 154 (219)
T 3h4p_a 81 ATLLSNILHSS----RMFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGY--DRDMSVEE 154 (219)
T ss_dssp HHHHHHHHHHT----TTTTCCCCCEEEEEETTTEEEEEEECSSCCEEECSSEEEESTTHHHHHHHHHTSC--CTTCCHHH
T ss_pred HHHHHHHHHHh----cCCCceEEEEEEEEeCCCCcEEEEECCCCceEecCCEEEEcCCHHHHHHHHHHhc--CCCCCHHH
Confidence 99999999876 36899999999999976789999999999999999 9999999999999999985 78999999
Q ss_pred HHHHHHHHHHHhhhccCCCC-cEEEEEEEeCCceEEEcCHHHHHHHHHHhhcc
Q 025892 194 TVQTAVSALQSVLQEDFKAT-EIEVGVVRSDDRVFRVLSSEEIDEHLTAISER 245 (246)
Q Consensus 194 a~~l~~~al~~~~~~d~~~~-~iei~iv~~~~~~~~~l~~~ei~~~~~~i~~~ 245 (246)
|++++++||..+.+||..++ +++|++|++++ |++++++||++++..++++
T Consensus 155 a~~la~~al~~~~~rd~~sg~~i~v~vi~~~g--~~~l~~~ei~~~l~~~~~~ 205 (219)
T 3h4p_a 155 GIKLALNALKSAMERDTFSGNGISLAVITKDG--VKIFEDEEIEKILDSMKAK 205 (219)
T ss_dssp HHHHHHHHHHHHHTSCSSCCSCCCEEEEETTE--EEECCHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCC--eEEcCHHHHHHHHHHhhcc
Confidence 99999999999999998774 89999999984 9999999999999998864
No 22
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=100.00 E-value=9.5e-48 Score=321.22 Aligned_cols=204 Identities=24% Similarity=0.397 Sum_probs=187.1
Q ss_pred HHHhccCceEEEEEcCCeEEEEEeccCC-CcccccCCceeeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCC
Q 025892 30 KAVKATAITSIGVRGKDSVCVVTQKKVP-DKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYE 108 (246)
Q Consensus 30 ~av~~~G~tvigi~~~dgVvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 108 (246)
.+++ +|+|+|||+++||||||+|+|.+ +.++.+++.+||++|+++++|++||+.+|++.|.++++.+++.|+++++++
T Consensus 3 ~~~~-~Gtt~vgi~~~dgVvlaaD~r~~~g~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (217)
T 1yar_H 3 QTLE-TGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVN 81 (217)
T ss_dssp -------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCCC-CCccEEEEEeCCEEEEEEcCCCCCCCEEecCccCCeEEeCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 3566 49999999999999999999999 688889999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCceeeeeeEEEecCChHHHHHHHHhhccCCCC
Q 025892 109 MPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPA 188 (246)
Q Consensus 109 ~~~~~la~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~ 188 (246)
++++.+++++++.++.+ +.|||++++|||||| +||+||.+||+|++.+++++|+|+|+++++++||+.| +++
T Consensus 82 ~~v~~la~~l~~~~~~~----r~rp~~v~~lvaG~D--~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~--~~~ 153 (217)
T 1yar_H 82 MPIEAVATLLSNMLNQV----KYMPYMVQLLVGGID--TAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQY--SEK 153 (217)
T ss_dssp CCHHHHHHHHHHHHHHT----TTSCCCEEEEEEEES--SSEEEEEECTTCCEEEESEEEESTTHHHHHHHHHHHC--CTT
T ss_pred CCHHHHHHHHHHHHHhc----CCCCceEEEEEEEEC--CCCEEEEECCCCCeEecCEEEEcCCHHHHHHHHHhhc--ccC
Confidence 99999999999999764 378999999999999 6899999999999999999999999999999999996 689
Q ss_pred CCHHHHHHHHHHHHHHhhhccCCC-CcEEEEEEEeCCceEEEcCHHHHHHHHHHhh
Q 025892 189 FSYEETVQTAVSALQSVLQEDFKA-TEIEVGVVRSDDRVFRVLSSEEIDEHLTAIS 243 (246)
Q Consensus 189 ~s~~ea~~l~~~al~~~~~~d~~~-~~iei~iv~~~~~~~~~l~~~ei~~~~~~i~ 243 (246)
||++||++++++||..+.+||..+ ++++|++|+++. +++.++++||++++.++.
T Consensus 154 ~s~eea~~la~~al~~~~~rd~~s~~~i~v~vi~~~~-g~~~~~~~ei~~~~~~~~ 208 (217)
T 1yar_H 154 MTVDEGVDLVIRAISAAKQRDSASGGMIDVAVITRKD-GYVQLPTDQIESRIRKLG 208 (217)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTCCSCCEEEEEETTT-EEEECCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEECCC-CEEEcCHHHHHHHHHHHH
Confidence 999999999999999999999765 489999999944 399999999999998775
No 23
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=100.00 E-value=1.7e-47 Score=316.24 Aligned_cols=198 Identities=24% Similarity=0.403 Sum_probs=187.4
Q ss_pred ceEEEEEcCCeEEEEEeccCC-CcccccCCceeeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q 025892 37 ITSIGVRGKDSVCVVTQKKVP-DKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLS 115 (246)
Q Consensus 37 ~tvigi~~~dgVvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 115 (246)
+|+|||+++||||||+|+|.+ +.++.+++.+||++|++|++|++||+.+|++.|.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (202)
T 1j2q_H 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIA 80 (202)
T ss_dssp CCEEEEEETTEEEEEEECCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEECCCcCcCCEEeeccccCEEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 589999999999999999999 6888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCceeeeee-EEEecCChHHHHHHHHhhccCCCCCCHHHH
Q 025892 116 RWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHK-ATSAGLKEQEAINFLEKKMKNDPAFSYEET 194 (246)
Q Consensus 116 ~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~~-~~a~G~g~~~~~~~Le~~~~~~~~~s~~ea 194 (246)
+++++.++.+ +.|||++++||||||+ +||+||.+||+|++.+++ ++|+|+|+++++++||+.| +++||++||
T Consensus 81 ~~l~~~~~~~----r~rp~~~~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~~aiG~g~~~a~~~Le~~~--~~~~s~eea 153 (202)
T 1j2q_H 81 TLTSNLLNSY----RYFPYLVQLLIGGIDS-EGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRF--TPEIGVDEA 153 (202)
T ss_dssp HHHHHHHHHT----TTSCCCEEEEEEEEET-TEEEEEEECTTCCEEEESSEEEESTTHHHHHHHHHHHC--CTTCCHHHH
T ss_pred HHHHHHHHhh----CCCCceEEEEEEEEeC-CCCEEEEECCCCCeeecCCEEEEcCCHHHHHHHHHhhc--CCCcCHHHH
Confidence 9999999764 3789999999999997 789999999999999999 9999999999999999996 689999999
Q ss_pred HHHHHHHHHHhhhccCCC-CcEEEEEEEeCCceEEEcCHHHHHHHHHHhh
Q 025892 195 VQTAVSALQSVLQEDFKA-TEIEVGVVRSDDRVFRVLSSEEIDEHLTAIS 243 (246)
Q Consensus 195 ~~l~~~al~~~~~~d~~~-~~iei~iv~~~~~~~~~l~~~ei~~~~~~i~ 243 (246)
++++++||..+.+||..+ ++++|++|++++ ++.++++||++++++|.
T Consensus 154 ~~la~~al~~~~~~d~~s~~~i~v~vi~~~g--~~~l~~~ei~~~~~~~~ 201 (202)
T 1j2q_H 154 VELAVRAIYSAMKRDSASGDGIDVVKITEDE--FYQYSPEEVEQILAKFR 201 (202)
T ss_dssp HHHHHHHHHHHHTTCTTSCSCEEEEEECSSC--EEECHHHHHHHHGGGTT
T ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEEEeCCC--eEEeCHHHHHHHHHHhh
Confidence 999999999999999765 489999999984 99999999999999875
No 24
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=100.00 E-value=4.5e-48 Score=335.49 Aligned_cols=232 Identities=15% Similarity=0.110 Sum_probs=175.0
Q ss_pred CCCCccccceeCCCCcc-----hh--hhhHHHHHhccCceEEEEEcCCeEEEEEeccCC-CcccccCCceeeEEecCcEE
Q 025892 6 GAGYDRHITIFSPEGRL-----FQ--VEYAFKAVKATAITSIGVRGKDSVCVVTQKKVP-DKLLDQTCVTHLFPITKYLG 77 (246)
Q Consensus 6 ~~~yd~~~t~fsp~Gri-----~Q--~eya~~av~~~G~tvigi~~~dgVvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~ 77 (246)
+++|+..+...+||.-. +| +|||.+ +++ |+|+|||+++||||||+|+|.+ +.++.+++.+||++|++|++
T Consensus 22 ~~~f~~~~~~~~~~~l~~~~~~~~~~~~ya~~-v~~-GtTiVgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~i~d~i~ 99 (291)
T 2jay_A 22 LSSFTDFLRRQAPELLPASISGGAPLAGGDAQ-LPH-GTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTA 99 (291)
T ss_dssp --------------------------------------CCEEEEEETTEEEEEECCC--------CCCCCCEEEEETTEE
T ss_pred CccHHHHhhhcChhhccccccccCcCcccccc-ccC-CcEEEEEEECCEEEEEECCCccCCCeeecCCcccEEEeCCcEE
Confidence 56788888888888654 33 589999 774 9999999999999999999999 56888889999999999999
Q ss_pred EEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhhhhccCCCCCccceeEEEEEeCCCC-----cEEE
Q 025892 78 LLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKG-----PQLY 152 (246)
Q Consensus 78 ~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~g-----p~Ly 152 (246)
|+++|+.+|++.|.++++.+++.|++.++++++++.+++.++++++.|++ ..+|||+|++||||||+.++ |+||
T Consensus 100 ~~~aG~~aD~~~l~~~lr~~~~~y~~~~~~~i~v~~la~~la~~l~~~~~-~~~rpf~v~~lvaG~D~~g~~~~~~p~Ly 178 (291)
T 2jay_A 100 TGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLA-AAMQGLLALPLLAGYDIHASDPQSAGRIV 178 (291)
T ss_dssp EEEESCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTCHH-HHHHTCCCEEEEEEECTTCSCSTTCEEEE
T ss_pred EEEcccHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhhh-hhccccceeEEEEEEeCCCCcCCCCCEEE
Confidence 99999999999999999999999999999999999999999999998865 45789999999999997555 9999
Q ss_pred EEcCCceee--eeeEEEecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCCCcE--------EEEEEEe
Q 025892 153 KCDPAGHFF--GHKATSAGLKEQEAINFLEKKMKNDPAFSYEETVQTAVSALQSVLQEDFKATEI--------EVGVVRS 222 (246)
Q Consensus 153 ~id~~G~~~--~~~~~a~G~g~~~~~~~Le~~~~~~~~~s~~ea~~l~~~al~~~~~~d~~~~~i--------ei~iv~~ 222 (246)
++||+|++. ++++.|+|+|+++++++||+.| +++||++||++++++||..+.++|+.++++ +|++|++
T Consensus 179 ~iDp~G~~~e~~~~~~aiGsgs~~a~~~Le~~~--~~~ms~eEAi~la~~aL~~a~~~D~~sg~~e~vr~~~~~v~vi~~ 256 (291)
T 2jay_A 179 SFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLY--SQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDA 256 (291)
T ss_dssp EECTTSCEEECSSSEEEESTTHHHHHHHHHHHG--GGCCSHHHHHHHHHHHHHHC----------------CCEEEEEET
T ss_pred EECCCCcEEecCCCEEEEecCHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHhhCCCCCCcccccccCCEEEEEEC
Confidence 999999998 8899999999999999999996 689999999999999999999999988765 5999999
Q ss_pred CCceEEEcCHHHHHHHHHHhhc
Q 025892 223 DDRVFRVLSSEEIDEHLTAISE 244 (246)
Q Consensus 223 ~~~~~~~l~~~ei~~~~~~i~~ 244 (246)
++ +++++++||++++.++.+
T Consensus 257 dg--~~~l~~~ei~~~~~~~~~ 276 (291)
T 2jay_A 257 DG--AVDVPESRIAELARAIIE 276 (291)
T ss_dssp TE--EEECCHHHHHHHHHHC--
T ss_pred CC--eEEcCHHHHHHHHHHHHH
Confidence 84 999999999999998864
No 25
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=100.00 E-value=7.6e-48 Score=333.31 Aligned_cols=209 Identities=14% Similarity=0.195 Sum_probs=190.1
Q ss_pred hHHHHHhccCceEEEEEcCCeEEEEEeccCC-CcccccCCceeeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHc
Q 025892 27 YAFKAVKATAITSIGVRGKDSVCVVTQKKVP-DKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKF 105 (246)
Q Consensus 27 ya~~av~~~G~tvigi~~~dgVvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~ 105 (246)
++.++++ +|+|+|||+++||||||+|+|.+ +.++..++.+||++|++|++|+++|+.+|++.|.++++.+++.|++++
T Consensus 67 ~~~~~v~-~GtT~vgik~~dGVVlAaD~r~t~G~li~~~~~~KI~~I~d~i~~~~aG~~AD~~~l~~~lr~~~~~y~~~~ 145 (287)
T 3nzj_K 67 DCKIKIA-HGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELRE 145 (287)
T ss_dssp ----------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhec-cCceEEEEEECCEEEEEEccccccCceeecCCcceEEEEcCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 6788898 59999999999999999999999 688889999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCceeeeeeEEEecCChHHHHHHHHhhccC
Q 025892 106 GYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKN 185 (246)
Q Consensus 106 ~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~ 185 (246)
+++++++.+++++++++|.|++ +||++++||||||+++||+||.+||+|++.++++.|+|+|+++++++||+.|
T Consensus 146 ~~~isv~~la~~ls~~l~~~r~----~p~~v~~lvaG~D~~~gp~Ly~iDp~G~~~~~~~~AiGsgs~~a~~~Le~~y-- 219 (287)
T 3nzj_K 146 KERISVAAASKILSNLVYQYKG----AGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNY-- 219 (287)
T ss_dssp SSCCCHHHHHHHHHHHHHHTTT----SCCCEEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHTSC--
T ss_pred CCCCCHHHHHHHHHHHHHhhcC----CCceEEEEEEEEcCCCCCEEEEECCCceEEEcCeEEEecchHHHHHHHHHhh--
Confidence 9999999999999999988754 4999999999999668899999999999999999999999999999999985
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhccCCCC-cEEEEEEEeCCceEEEcCHHHHHHHHHHhhc
Q 025892 186 DPAFSYEETVQTAVSALQSVLQEDFKAT-EIEVGVVRSDDRVFRVLSSEEIDEHLTAISE 244 (246)
Q Consensus 186 ~~~~s~~ea~~l~~~al~~~~~~d~~~~-~iei~iv~~~~~~~~~l~~~ei~~~~~~i~~ 244 (246)
+++||++||++++++||..+.+||+.++ +++|++|++++ |++++++||++++.++.+
T Consensus 220 ~~dms~eEAi~la~~aL~~a~~rD~~sg~~i~V~vItkdg--~~~l~~~ev~~~l~~~~e 277 (287)
T 3nzj_K 220 KWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTEDG--WIYHGNHDVGELFWKVKE 277 (287)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTE--EEEEEEEEHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHhhCcCCCCceEEEEEeCCC--EEEeCHHHHHHHHHHHHH
Confidence 6899999999999999999999998875 89999999985 999999999999888764
No 26
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=100.00 E-value=3.7e-47 Score=330.01 Aligned_cols=211 Identities=18% Similarity=0.169 Sum_probs=196.4
Q ss_pred HHHHHhccCceEEEEEcCCeEEEEEeccCC-CcccccCCceeeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcC
Q 025892 28 AFKAVKATAITSIGVRGKDSVCVVTQKKVP-DKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFG 106 (246)
Q Consensus 28 a~~av~~~G~tvigi~~~dgVvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~ 106 (246)
|.+|+++ |+|+|||+++||||||+|+|.+ +.++..++.+||++|++|++|+++|+.+|++.|.++++.+++.|+++++
T Consensus 58 a~~Av~~-GtTiVgIk~kdGVVlAaD~r~t~G~li~~~~~~KI~~I~~~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~g 136 (294)
T 1q5r_H 58 SGDLAPH-GTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEG 136 (294)
T ss_dssp --CCSCB-CCCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHhc-CceEEEEEECCEEEEEEcCccccCceeecCCcceEEEECCcEEEEEeecHHHHHHHHHHHHHHHHHhhHhhC
Confidence 7888985 9999999999999999999999 6899899999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhhhhhccCCCCCccceeEEEEEeCCCC-----cEEEEEcCCceeeee--eEEEecCChHHHHHHH
Q 025892 107 YEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKG-----PQLYKCDPAGHFFGH--KATSAGLKEQEAINFL 179 (246)
Q Consensus 107 ~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~g-----p~Ly~id~~G~~~~~--~~~a~G~g~~~~~~~L 179 (246)
++++++.+++.|++++|.|+++. +|||++++||||||+.++ |+||++||+|++.++ +++|+|+|+++++++|
T Consensus 137 ~~isv~~la~~la~~l~~~~~~~-~rp~~v~lLvaG~D~~~g~~~~~p~Ly~iDp~G~~~e~~~~~~AiGsgs~~a~~~L 215 (294)
T 1q5r_H 137 VPLTFDGKANRLASMVRGNLGAA-MQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSAL 215 (294)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHH-TTTTCEEEEEEEECTTCSCTTSCEEEEEECSSSCEEECCSSEEEESTTHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhhh-cCCcceEEEEEEEeCCCCcCCCCCEEEEECCCCeEEecCCCeEEEecCcHHHHHHH
Confidence 99999999999999999988754 799999999999997556 999999999999999 8999999999999999
Q ss_pred HhhccCCCCCCHHHHHHHHHHHHHHhhhccCCCCc---E-----EEEEEEeCCceEEEcCHHHHHHHHHHhhc
Q 025892 180 EKKMKNDPAFSYEETVQTAVSALQSVLQEDFKATE---I-----EVGVVRSDDRVFRVLSSEEIDEHLTAISE 244 (246)
Q Consensus 180 e~~~~~~~~~s~~ea~~l~~~al~~~~~~d~~~~~---i-----ei~iv~~~~~~~~~l~~~ei~~~~~~i~~ 244 (246)
|++| +++|+++||++++++||..+.++|+.++. + +|++|++++ ++.++++||++++.++.+
T Consensus 216 e~~y--~~~ms~eEAi~la~~aL~~a~~rD~~sG~~~~ir~i~~ev~vI~~~g--~~~l~~~ei~~~l~~i~~ 284 (294)
T 1q5r_H 216 KKIY--SPDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAG--AVHVSEETTSELARRIVA 284 (294)
T ss_dssp HHHC--CSSCCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTE--EEECCHHHHHHHHHHHCC
T ss_pred HHhc--cCCCCHHHHHHHHHHHHHHHHhhccccCCchhhcccCCEEEEEECCC--EEEcCHHHHHHHHHHHHH
Confidence 9995 78999999999999999999999987642 5 999999874 999999999999998864
No 27
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=100.00 E-value=1.6e-46 Score=317.32 Aligned_cols=203 Identities=18% Similarity=0.187 Sum_probs=190.6
Q ss_pred ceEEEEEcCCeEEEEEeccCC-CcccccCCceeeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q 025892 37 ITSIGVRGKDSVCVVTQKKVP-DKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLS 115 (246)
Q Consensus 37 ~tvigi~~~dgVvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 115 (246)
+|+|||+++||||||+|+|.+ +.++.+++.+||++|+++++|++||+.+|++.|.++++.+++.|+++++++++++.++
T Consensus 1 tT~vgi~~~dgVVlaaD~r~~~g~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (235)
T 1q5q_H 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKA 80 (235)
T ss_dssp CCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEECCCCCcCCEEecCCcCcEEEeCCcEEEEcCCcHHHHHHHHHHHHHHHHHhHHHhCCCCCHHHHH
Confidence 589999999999999999999 6899899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhccCCCCCccceeEEEEEeCCCC-----cEEEEEcCCceeeee--eEEEecCChHHHHHHHHhhccCCCC
Q 025892 116 RWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKG-----PQLYKCDPAGHFFGH--KATSAGLKEQEAINFLEKKMKNDPA 188 (246)
Q Consensus 116 ~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~g-----p~Ly~id~~G~~~~~--~~~a~G~g~~~~~~~Le~~~~~~~~ 188 (246)
+.|++++|.|+++. +|||++++||||||+.++ |+||.+||+|++.++ +++|+|+|+++++++||+.| +++
T Consensus 81 ~~l~~~~~~~~~~~-~rp~~v~~lvaG~D~~~g~~~~~p~Ly~idp~G~~~~~~~~~~aiGsgs~~a~~~Le~~~--~~~ 157 (235)
T 1q5q_H 81 NRLASMVRGNLGAA-MQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIY--SPD 157 (235)
T ss_dssp HHHHHHHHTTHHHH-TTTCCEEEEEEEECTTCSSTTSCEEEEEECTTSCEEECCSSEEEESTTHHHHHHHHHHHC--CTT
T ss_pred HHHHHHHHHHHHhh-hcccceEEEEEEEECCCCccCCCCEEEEECCCCceEEeCCCeEEECCCHHHHHHHHHhhc--CCC
Confidence 99999999988764 799999999999998557 999999999999999 99999999999999999995 789
Q ss_pred CCHHHHHHHHHHHHHHhhhccCCCCc---E-----EEEEEEeCCceEEEcCHHHHHHHHHHhhc
Q 025892 189 FSYEETVQTAVSALQSVLQEDFKATE---I-----EVGVVRSDDRVFRVLSSEEIDEHLTAISE 244 (246)
Q Consensus 189 ~s~~ea~~l~~~al~~~~~~d~~~~~---i-----ei~iv~~~~~~~~~l~~~ei~~~~~~i~~ 244 (246)
||++||++++++||..+.++|+.+++ + +|++|++++ |+.++++||++++.++.+
T Consensus 158 ms~eeA~~la~~al~~a~~~d~~sg~~~~i~~~~~ev~vi~~~g--~~~l~~~ei~~~~~~~~~ 219 (235)
T 1q5q_H 158 SDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAG--AVHVSEETTSELARRIVA 219 (235)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTE--EEECCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhCcccCCcccccccccEEEEEeCCC--eEEeCHHHHHHHHHHHHH
Confidence 99999999999999999999987653 2 999999874 999999999999998864
No 28
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=100.00 E-value=8e-47 Score=314.52 Aligned_cols=200 Identities=15% Similarity=0.212 Sum_probs=188.3
Q ss_pred ceEEEEEcCCeEEEEEeccCC-CcccccCCceeeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q 025892 37 ITSIGVRGKDSVCVVTQKKVP-DKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLS 115 (246)
Q Consensus 37 ~tvigi~~~dgVvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 115 (246)
+|+|||+++||||||+|+|.+ +.++.+++.+||++|++|++|++||+.+|++.|.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (212)
T 1ryp_L 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAAS 80 (212)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCCeEecCcccceeeeCCcEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 589999999999999999999 5898889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCceeeeeeEEEecCChHHHHHHHHhhccCCCCCCHHHHH
Q 025892 116 RWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFSYEETV 195 (246)
Q Consensus 116 ~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~s~~ea~ 195 (246)
+++++.+|.|++ .||++++||||||+++||+||.+||+|++.+++++|+|+|+++++++||++| +++||++||+
T Consensus 81 ~~l~~~~~~~~~----~p~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~--~~~~s~eea~ 154 (212)
T 1ryp_L 81 KILSNLVYQYKG----AGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNY--KWDLSVEDAL 154 (212)
T ss_dssp HHHHHHHHHTTT----SCCCBEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHHHC--CTTCCHHHHH
T ss_pred HHHHHHHHhhCC----CCceEEEEEEEEeCCCCCEEEEEcCCceeEecCCEEEcCCHHHHHHHHHhhC--CCCCCHHHHH
Confidence 999999998875 3999999999999657899999999999999999999999999999999996 7899999999
Q ss_pred HHHHHHHHHhhhccCCC-CcEEEEEEEeCCceEEEcCHHHHHHHHHHhhc
Q 025892 196 QTAVSALQSVLQEDFKA-TEIEVGVVRSDDRVFRVLSSEEIDEHLTAISE 244 (246)
Q Consensus 196 ~l~~~al~~~~~~d~~~-~~iei~iv~~~~~~~~~l~~~ei~~~~~~i~~ 244 (246)
+++++||..+.+||..+ ++++|++|++++ +++++++||++++.++.+
T Consensus 155 ~la~~al~~~~~rd~~s~~~i~v~vi~~~g--~~~~~~~ei~~~~~~~~~ 202 (212)
T 1ryp_L 155 YLGKRSILAAAHRDAYSGGSVNLYHVTEDG--WIYHGNHDVGELFWKVKE 202 (212)
T ss_dssp HHHHHHHHHHHHHBTTCCSEEEEEEEETTE--EEEEEEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCCceEEEEEcCCc--eEEECHHHHHHHHHHHHH
Confidence 99999999999999765 489999999874 999999999999887764
No 29
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=100.00 E-value=1.2e-46 Score=311.64 Aligned_cols=200 Identities=19% Similarity=0.249 Sum_probs=187.8
Q ss_pred ceEEEEEcCCeEEEEEeccCC-CcccccCCceeeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q 025892 37 ITSIGVRGKDSVCVVTQKKVP-DKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLS 115 (246)
Q Consensus 37 ~tvigi~~~dgVvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 115 (246)
+|+|||+++||||||+|+|.+ +.++.+++.+||++|++|++|++||+.+|++.|.+.++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (204)
T 1iru_L 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAAS 80 (204)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCCEEEcCcccceEEcCCCEEEEccCcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 589999999999999999999 5888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCceeeeeeEEEecCChHHHHHHHHhhccCCCCCCHHHHH
Q 025892 116 RWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFSYEETV 195 (246)
Q Consensus 116 ~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~s~~ea~ 195 (246)
+++++.+|.|+ .+||++++||||||+ +||+||.+||+|++.++++.|+|+|+++++++||++| +++||++||+
T Consensus 81 ~~l~~~~~~~r----~~~~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~--~~~~s~eea~ 153 (204)
T 1iru_L 81 KLLANMVYQYK----GMGLSMGTMICGWDK-RGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGY--SYDLEVEQAY 153 (204)
T ss_dssp HHHHHHHHTTT----TSCCCBEEEEEEECS-SSEEEEEEESSSCEEECSEEEESTTHHHHHHHHHTTC--CTTCCHHHHH
T ss_pred HHHHHHHHHhC----CCCeeEEEEEEEEeC-CCCEEEEECCCCcEEEeCCEEEEcCHHHHHHHHhccC--CCCCCHHHHH
Confidence 99999998874 359999999999997 7999999999999999999999999999999999985 6899999999
Q ss_pred HHHHHHHHHhhhccCCC-CcEEEEEEEeCCceEEEcCHHHHHHHHHHhhcc
Q 025892 196 QTAVSALQSVLQEDFKA-TEIEVGVVRSDDRVFRVLSSEEIDEHLTAISER 245 (246)
Q Consensus 196 ~l~~~al~~~~~~d~~~-~~iei~iv~~~~~~~~~l~~~ei~~~~~~i~~~ 245 (246)
+++++||..+.+||..+ ++++|++|++++ |+.++++||++++.++.+.
T Consensus 154 ~l~~~al~~~~~rd~~s~~~i~v~vi~~~g--~~~l~~~ei~~~~~~~~~~ 202 (204)
T 1iru_L 154 DLARRAIYQATYRDAYSGGAVNLYHVREDG--WIRVSSDNVADLHEKYSGS 202 (204)
T ss_dssp HHHHHHHHHHHHHBTTCCSEEEEEEECSSC--EEEEEEEEHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHhCccCCCceEEEEEeCCc--eEEeCHHHHHHHHHHhccC
Confidence 99999999999999755 589999999874 9999999999999988643
No 30
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=100.00 E-value=4.4e-47 Score=314.48 Aligned_cols=198 Identities=15% Similarity=0.205 Sum_probs=186.3
Q ss_pred ceEEEEEcCCeEEEEEeccCCC-cccccCCceeeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q 025892 37 ITSIGVRGKDSVCVVTQKKVPD-KLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLS 115 (246)
Q Consensus 37 ~tvigi~~~dgVvlaad~~~~~-~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 115 (246)
+|+|||+++||||||+|+|.++ .++..++.+||++|++|++|++||+.+|++.|.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (205)
T 1iru_H 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAA 80 (205)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEecCCcCceEEcCCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 5899999999999999999994 488888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCceeeeeeEEEecCChHHHHHHHHhhccCCCCCCHHHHH
Q 025892 116 RWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFSYEETV 195 (246)
Q Consensus 116 ~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~s~~ea~ 195 (246)
+++++.+|.|++ ||++++||||||+++||+||.+||+|++.+++++++|+|+++++++||++| +++||++||+
T Consensus 81 ~~l~~~~~~~~~-----p~~~~~lvaG~D~~~gp~ly~~d~~G~~~~~~~~a~Gsgs~~a~~~Le~~~--~~~~s~eea~ 153 (205)
T 1iru_H 81 SLFKEMCYRYRE-----DLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATY--REGMTKEECL 153 (205)
T ss_dssp HHHHHHHHHTTT-----TCCEEEEEEEEETTTEEEEEEECTTSCCEECSEEEESGGGGGGHHHHHHHC--CTTCCHHHHH
T ss_pred HHHHHHHHhcCc-----CccEEEEEEEEeCCCCCEEEEECCCCcEEecCEEEECCCHHHHHHHHHHhc--CCCCCHHHHH
Confidence 999999988764 999999999999767899999999999999999999999999999999996 7899999999
Q ss_pred HHHHHHHHHhhhccCCC-CcEEEEEEEeCCceEEEcCHHHHHHHHHH
Q 025892 196 QTAVSALQSVLQEDFKA-TEIEVGVVRSDDRVFRVLSSEEIDEHLTA 241 (246)
Q Consensus 196 ~l~~~al~~~~~~d~~~-~~iei~iv~~~~~~~~~l~~~ei~~~~~~ 241 (246)
+++++||..+.+||..+ ++++|++|++++..++.++++||++++++
T Consensus 154 ~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~l~~~ei~~~~~~ 200 (205)
T 1iru_H 154 QFTANALALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIPKFAVA 200 (205)
T ss_dssp HHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEECGGGSCCCCCC
T ss_pred HHHHHHHHHHHHhccccCCcEEEEEEeCCCeEEEEeChHHhhHHHhh
Confidence 99999999999999765 58999999999877899999999887654
No 31
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=100.00 E-value=7.5e-48 Score=322.23 Aligned_cols=204 Identities=14% Similarity=0.198 Sum_probs=188.9
Q ss_pred HHHhccCceEEEEEcCCeEEEEEeccCC-CcccccCCceeeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHH-HcCC
Q 025892 30 KAVKATAITSIGVRGKDSVCVVTQKKVP-DKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRF-KFGY 107 (246)
Q Consensus 30 ~av~~~G~tvigi~~~dgVvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~-~~~~ 107 (246)
+|+++ |+|+|||+++||||||+|+|.+ +.++.+++.+||++|++|++|+++|+.+|++.|.++++.+++.|++ ++++
T Consensus 3 ~av~~-Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (219)
T 1iru_N 3 NPMVT-GTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGH 81 (219)
T ss_dssp SCCSE-ECCCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred CCccC-CceEEEEEeCCEEEEEECCccccCcEEecCCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 56774 9999999999999999999999 6888889999999999999999999999999999999999999998 9999
Q ss_pred CCCHHHHHHHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCceeeeeeEEEecCChHHHHHHHHhhccCCC
Q 025892 108 EMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDP 187 (246)
Q Consensus 108 ~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~ 187 (246)
+++++.+++++++.+ |+++.++|||++++||||||+ +||+||.+||+|++.+++++|+|+|+++++++||+.|+..+
T Consensus 82 ~~~v~~la~~l~~~l--y~~r~~~~P~~v~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~ 158 (219)
T 1iru_N 82 SYSPRAIHSWLTRAM--YSRRSKMNPLWNTMVIGGYAD-GESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQP 158 (219)
T ss_dssp CCCHHHHHHHHHHHH--HHHHHTTCCCCEEEEEEEEET-TEEEEEEECSSCCEEECSEEECTTHHHHTHHHHHHHHTSCS
T ss_pred CCCHHHHHHHHHHHH--HHhcccCCCceEEEEEEEEEC-CCCEEEEECCCCCeEECCeEEECccHHHHHHHHHhhcCCCC
Confidence 999999999999999 556667899999999999997 69999999999999999999999999999999999974323
Q ss_pred CCCHHHHHHHHHHHHHHhhhccCCCC-cEEEEEEEeCCceEEEcCHHHHHHHH
Q 025892 188 AFSYEETVQTAVSALQSVLQEDFKAT-EIEVGVVRSDDRVFRVLSSEEIDEHL 239 (246)
Q Consensus 188 ~~s~~ea~~l~~~al~~~~~~d~~~~-~iei~iv~~~~~~~~~l~~~ei~~~~ 239 (246)
+||++||++++++||..+.+||+.++ +++|++|++++ ++.++++||+..|
T Consensus 159 ~mt~eea~~l~~~al~~~~~~d~~sg~~i~v~vi~~~g--~~~~~~~~i~~~~ 209 (219)
T 1iru_N 159 VLSQTEARDLVERCMRVLYYRDARSYNRFQTATVTEKG--VEIEGPLSTETNW 209 (219)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTE--EEEEEEECCCCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEcCCC--EEEcCCeeccchh
Confidence 99999999999999999999998764 89999999985 9999999987765
No 32
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=100.00 E-value=1.5e-47 Score=323.22 Aligned_cols=204 Identities=14% Similarity=0.237 Sum_probs=190.0
Q ss_pred HHHhccCceEEEEEcCCeEEEEEeccCC-CcccccCCceeeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHH-----
Q 025892 30 KAVKATAITSIGVRGKDSVCVVTQKKVP-DKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRF----- 103 (246)
Q Consensus 30 ~av~~~G~tvigi~~~dgVvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~----- 103 (246)
+|++ +|+|+|||+++||||||+|+|.+ +.++.+++.+||++|++|++|+++|+.+|++.|.++++.+++.|++
T Consensus 3 ~av~-~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (233)
T 1ryp_N 3 QPIV-TGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLA 81 (233)
T ss_dssp CCCE-EECCEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTT
T ss_pred cccc-CCceEEEEEECCEEEEEEcCccccCCeeecCCcCceEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHhhccchh
Confidence 5677 49999999999999999999999 6888888999999999999999999999999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCceeeeeeEEEecCChHHHHHHHHhhc
Q 025892 104 KFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKM 183 (246)
Q Consensus 104 ~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~ 183 (246)
+++++++++.+++++++.+ |+++.++|||++++||||||+++||+||.+||+|++.++++.|+|+|+++++++||+.|
T Consensus 82 ~~~~~~~v~~la~~l~~~l--y~~r~~~~P~~v~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~ 159 (233)
T 1ryp_N 82 DAEEALEPSYIFEYLATVM--YQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVV 159 (233)
T ss_dssp TTTTSCCHHHHHHHHHHHH--HHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHHHHHHHTTTC
T ss_pred hcCCCCCHHHHHHHHHHHH--HHhcCCCCCceEEEEEEEEcCCCCEEEEEECCCcCeEEcCEEEECcCHHHHHHHHHHhh
Confidence 8999999999999999999 56667789999999999999756999999999999999999999999999999999996
Q ss_pred cCCC-----CCCHHHHHHHHHHHHHHhhhccCCCC-cEEEEEEEeCCceEEEcCHHHHHHH-H
Q 025892 184 KNDP-----AFSYEETVQTAVSALQSVLQEDFKAT-EIEVGVVRSDDRVFRVLSSEEIDEH-L 239 (246)
Q Consensus 184 ~~~~-----~~s~~ea~~l~~~al~~~~~~d~~~~-~iei~iv~~~~~~~~~l~~~ei~~~-~ 239 (246)
++ +||++||++++++||..+.+||+.++ +++|++|+++++ ++.++++||+++ |
T Consensus 160 --~~~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~g-~~~~~~~~i~~~~w 219 (233)
T 1ryp_N 160 --DRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTG-LTFKKNLQVENMKW 219 (233)
T ss_dssp --SSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTE-EEEEEEEECCSCCC
T ss_pred --ccccccCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEECCCC-eEEcChHhcccccc
Confidence 55 89999999999999999999998765 899999999843 999999998877 5
No 33
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=100.00 E-value=4.7e-45 Score=303.98 Aligned_cols=190 Identities=14% Similarity=0.238 Sum_probs=175.0
Q ss_pred cCceEEEEEcCCeEEEEEeccCCC-cccccCCceeeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHH
Q 025892 35 TAITSIGVRGKDSVCVVTQKKVPD-KLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDV 113 (246)
Q Consensus 35 ~G~tvigi~~~dgVvlaad~~~~~-~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 113 (246)
+|+|+|||+++||||||+|+|.+. .++.+++.+||++|++|++|++||+.+|++.|.++++.+++.|+++++++++++.
T Consensus 8 ~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~ 87 (213)
T 1iru_M 8 NGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGA 87 (213)
T ss_dssp CCCEEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHH
T ss_pred CCCcEEEEEeCCEEEEEECCCcccCCEEecCCCCcEEEcCCCEEEEccccHHHHHHHHHHHHHHHHHHHHhcCCCCCHHH
Confidence 599999999999999999999994 5555678999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCceeeeeeEEEecCChHHHHHHHHhhcc-------CC
Q 025892 114 LSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMK-------ND 186 (246)
Q Consensus 114 la~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~-------~~ 186 (246)
++++|++.+ |+++ .|||++++||||||++++|+||.+||+|++.+++++|+|+|+++++++||+.|+ |+
T Consensus 88 la~~l~~~~--y~~r--~~P~~v~~lvaG~D~~g~p~Ly~id~~G~~~~~~~~aiGsg~~~a~~~Le~~~~~~~~~~~~~ 163 (213)
T 1iru_M 88 IAAMLSTIL--YSRR--FFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEH 163 (213)
T ss_dssp HHHHHHHHH--HHTT--TSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTTCCSCSSCCC
T ss_pred HHHHHHHHH--HhhC--CCCceEEEEEEEEcCCCCEEEEEECCCCCEEECCEEEEeeCHHHHHHHHhhccccccccccCC
Confidence 999999999 6655 789999999999997566999999999999999999999999999999999964 46
Q ss_pred CCCCHHHHHHHHHHHHHHhhhccCCC-CcEEEEEEEeCCceEE
Q 025892 187 PAFSYEETVQTAVSALQSVLQEDFKA-TEIEVGVVRSDDRVFR 228 (246)
Q Consensus 187 ~~~s~~ea~~l~~~al~~~~~~d~~~-~~iei~iv~~~~~~~~ 228 (246)
++||++||++++++||..+.++|+.+ ++++|++|++++...+
T Consensus 164 ~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~ 206 (213)
T 1iru_M 164 VPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGIREE 206 (213)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHBTTSCSEEEEEEEETTEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCccCCcEEEEEEcCCCeEEE
Confidence 89999999999999999999999875 4899999999875333
No 34
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=100.00 E-value=2.7e-45 Score=303.77 Aligned_cols=193 Identities=15% Similarity=0.168 Sum_probs=178.9
Q ss_pred HHHHhccCceEEEEEcCCeEEEEEeccCC-CcccccCCceeeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCC
Q 025892 29 FKAVKATAITSIGVRGKDSVCVVTQKKVP-DKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGY 107 (246)
Q Consensus 29 ~~av~~~G~tvigi~~~dgVvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 107 (246)
.++++ +|+|+|||+++||||||+|+|.+ +.++..++.+||++|++|++|++||+.+|++.+.++++.+++.|++++++
T Consensus 3 ~~av~-~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~ 81 (205)
T 1ryp_H 3 KGEVS-LGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGT 81 (205)
T ss_dssp TTCCB-CCCCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCc-CCceEEEEEeCCEEEEEEcCCcccCcEEEcCCcCceEEcCCCEEEEccCCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 46787 49999999999999999999999 45888889999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCceeeeeeEEEecCChHHHHHHHHhhccCCC
Q 025892 108 EMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDP 187 (246)
Q Consensus 108 ~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~ 187 (246)
++++.+++++++.+|.|+++ |++++||||||+++||+||.+||+|++.+++++|+|+|+++++++||+.| ++
T Consensus 82 -~~v~~la~~l~~~~~~~~~~-----~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~--~~ 153 (205)
T 1ryp_H 82 -PSTETAASVFKELCYENKDN-----LTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNF--RE 153 (205)
T ss_dssp -CCHHHHHHHHHHHHHHTTTT-----CCEEEEEEEEETTTEEEEEEECTTSCCEEESEEEESGGGGGGHHHHHHHC--CT
T ss_pred -CCHHHHHHHHHHHHHhhhcC-----ceEEEEEEEEecCCCcEEEEECCCccEEecCEEEEEecHHHHHHHHHhcc--CC
Confidence 99999999999999988642 99999999999767899999999999999999999999999999999995 78
Q ss_pred CCCHHHHHHHHHHHHHHhhhccCCC-CcEEEEEEEeCCceEEEc
Q 025892 188 AFSYEETVQTAVSALQSVLQEDFKA-TEIEVGVVRSDDRVFRVL 230 (246)
Q Consensus 188 ~~s~~ea~~l~~~al~~~~~~d~~~-~~iei~iv~~~~~~~~~l 230 (246)
+||++||++++++||..+.+||+.+ ++++|++|++++...+.+
T Consensus 154 ~~s~eea~~l~~~al~~a~~~d~~sg~~i~v~vi~~~g~~~~~~ 197 (205)
T 1ryp_H 154 NMSKEETVDFIKHSLSQAIKWDGSSGGVIRMVVLTAAGVERLIF 197 (205)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCccCCeEEEEEEcCCCEEEEEe
Confidence 9999999999999999999999865 489999999998644445
No 35
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=100.00 E-value=7.9e-47 Score=324.62 Aligned_cols=208 Identities=13% Similarity=0.228 Sum_probs=191.4
Q ss_pred hhhHHHHHhccCceEEEEEcCCeEEEEEeccCC-CcccccCCceeeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHH
Q 025892 25 VEYAFKAVKATAITSIGVRGKDSVCVVTQKKVP-DKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRF 103 (246)
Q Consensus 25 ~eya~~av~~~G~tvigi~~~dgVvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~ 103 (246)
.+-+.++++ +|+|+|||+++||||||+|+|.+ +.++.+++.+||++|++|++|+++|+.+|++.|.++++.+++.|++
T Consensus 31 ~~~~~~av~-~GtT~vgi~~~dgVVlAaD~r~t~g~~i~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~ 109 (266)
T 1g0u_M 31 MVNTQQPIV-TGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAY 109 (266)
T ss_dssp ---CCCCCE-EECCEEEEEETTEEEEEEECCEEETTEEEECCCCCEEECTTSEEEEEEEEHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhccCcc-cCceEEEEEECCEEEEEEcCCcccCceeecCCcCcEEEcCCCEEEEeccCHHHHHHHHHHHHHHHHHhhh
Confidence 345678888 49999999999999999999998 6788888999999999999999999999999999999999999998
Q ss_pred -----HcCCCCCHHHHHHHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCceeeeeeEEEecCChHHHHHH
Q 025892 104 -----KFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINF 178 (246)
Q Consensus 104 -----~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~ 178 (246)
+++++++++.+++++++.+ |+++.++|||++++||||||+++||+||.+||+|++.+++++|+|+|+++++++
T Consensus 110 ~~~~~~~~~~~~v~~la~~l~~~l--y~~r~~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~ 187 (266)
T 1g0u_M 110 DNPLADAEEALEPSYIFEYLATVM--YQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPL 187 (266)
T ss_dssp TCTTTTTTTSCCHHHHHHHHHHHH--HHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHTHHHH
T ss_pred ccchhhcCCCCCHHHHHHHHHHHH--HHhccCCCCceEEEEEEEEcCCCCEEEEEECCCCCEEeCCEEEEccCHHHHHHH
Confidence 8999999999999999999 666667899999999999997569999999999999999999999999999999
Q ss_pred HHhhccCCC-----CCCHHHHHHHHHHHHHHhhhccCCCC-cEEEEEEEeCCceEEEcCHHHHHHH
Q 025892 179 LEKKMKNDP-----AFSYEETVQTAVSALQSVLQEDFKAT-EIEVGVVRSDDRVFRVLSSEEIDEH 238 (246)
Q Consensus 179 Le~~~~~~~-----~~s~~ea~~l~~~al~~~~~~d~~~~-~iei~iv~~~~~~~~~l~~~ei~~~ 238 (246)
||+.| ++ +||++||++++++||..+.+||+.++ +++|++|+++++ ++.++++||+++
T Consensus 188 Le~~~--~~~~~~~~ms~eeA~~la~~al~~a~~rd~~sg~~i~v~vI~k~~g-~~~~~~~ei~~~ 250 (266)
T 1g0u_M 188 LRKVV--DRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTG-LTFKKNLQVENM 250 (266)
T ss_dssp HTTTC--SSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTE-EEEEEEEECCCC
T ss_pred HHHhh--cccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEECCCC-eEEcCHHHhhhh
Confidence 99996 55 89999999999999999999998765 899999999843 999999998877
No 36
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=100.00 E-value=1e-44 Score=298.71 Aligned_cols=190 Identities=17% Similarity=0.238 Sum_probs=175.8
Q ss_pred ceEEEEEcCCeEEEEEeccCC-CcccccCCceeeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q 025892 37 ITSIGVRGKDSVCVVTQKKVP-DKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLS 115 (246)
Q Consensus 37 ~tvigi~~~dgVvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 115 (246)
+|+|||+++||||||+|+|.+ +.++.+++.+||++|++|++|+++|+.+|++.|.++++.+++.|+++++++++++.++
T Consensus 2 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 81 (198)
T 1ryp_K 2 DIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAVS 81 (198)
T ss_dssp CCEEEEECSSCEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred ceEEEEEECCEEEEEECCCcccCCEEEecCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 699999999999999999998 5555577899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhccCCCCCccceeEEEEEeC-CCCcEEEEEcCCceeeeeeEEEecCChHHHHHHHHhhccCCCCCCHHHH
Q 025892 116 RWIADKSQVYTQHAYMRPLGVVAMVLGIDE-EKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFSYEET 194 (246)
Q Consensus 116 ~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~-~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~s~~ea 194 (246)
+++++.++.|++. ++||++++||||||+ ++||+||.+||+|++.+++++|+|+|+++++++||+.| +++||++||
T Consensus 82 ~~l~~~l~~~~~~--r~p~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~--~~~~s~eea 157 (198)
T 1ryp_K 82 SFVRQELAKSIRS--RRPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHY--RPDMTTEEG 157 (198)
T ss_dssp HHHHHHHHHHTTS--SSCCCEEEEEEEEETTTTEEEEEEECTTCCEEECSEEECTTHHHHHHHHHHHHC--CTTCCHHHH
T ss_pred HHHHHHHHHhccc--CCCceEEEEEEEEeCCCCCcEEEEECCCCCEEECCEEEEcccHHHHHHHHHhhc--CCCCCHHHH
Confidence 9999999887632 359999999999996 47899999999999999999999999999999999996 689999999
Q ss_pred HHHHHHHHHHhhhccCCC-CcEEEEEEEeCCceEEEcCH
Q 025892 195 VQTAVSALQSVLQEDFKA-TEIEVGVVRSDDRVFRVLSS 232 (246)
Q Consensus 195 ~~l~~~al~~~~~~d~~~-~~iei~iv~~~~~~~~~l~~ 232 (246)
++++++||..+.+||..+ ++++|++|++++ ++.+++
T Consensus 158 ~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g--~~~~~~ 194 (198)
T 1ryp_K 158 LDLLKLCVQELEKRMPMDFKGVIVKIVDKDG--IRQVDD 194 (198)
T ss_dssp HHHHHHHHHHHHHHCSBCCCCEEEEEEETTE--EEEECC
T ss_pred HHHHHHHHHHHHHhCccCCCceEEEEEcCCC--EEEecc
Confidence 999999999999999765 589999999984 888775
No 37
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=100.00 E-value=1.3e-44 Score=309.41 Aligned_cols=194 Identities=19% Similarity=0.225 Sum_probs=174.4
Q ss_pred HHHHHhccCceEEEEEcCCeEEEEEeccCC-CcccccCCceeeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcC
Q 025892 28 AFKAVKATAITSIGVRGKDSVCVVTQKKVP-DKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFG 106 (246)
Q Consensus 28 a~~av~~~G~tvigi~~~dgVvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~ 106 (246)
..||++ +|+|+|||+++||||||+|+|.+ +.++..++.+||++|++|++|++||+.+|++.+.+.++.+++.|+++++
T Consensus 22 ~~kav~-~GtTivgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~ 100 (261)
T 3nzj_H 22 QPKATS-TGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTS 100 (261)
T ss_dssp ---------CCEEEEEETTEEEEEEECCEEETTEEEETTCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcccc-cCceEEEEEECCEEEEEEcCCcccCCeeccCCcceEEEEcCCEEEEeccCHHHHHHHHHHHHHHHHHhHHhhC
Confidence 368888 49999999999999999999999 6788888999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCceeeeeeEEEecCChHHHHHHHHhhccCC
Q 025892 107 YEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKND 186 (246)
Q Consensus 107 ~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~ 186 (246)
++++++.+++++++.++.| .+||++++||||||+ .||+||++||+|++.+++++|+|+|++.++++||++| +
T Consensus 101 ~~~~v~~~a~~l~~~l~~~-----~~~~gv~llvaG~D~-~Gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~--~ 172 (261)
T 3nzj_H 101 REPRVVSALQMLKQHLFKY-----QGHIGAYLIVAGVDP-TGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHW--K 172 (261)
T ss_dssp SCCCHHHHHHHHHHHHHHT-----TTCSCEEEEEEEEET-TEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHC--C
T ss_pred CCCCHHHHHHHHHHHHHHh-----cCcccEEEEEEEEeC-CCCEEEEECCCccEEecCeEEeccchHHHHHHHHHHh--c
Confidence 9999999999999988654 469999999999997 7899999999999999999999999999999999995 7
Q ss_pred CCCCHHHHHHHHHHHHHHhhhccCCCC-cEEEEEEEeCCceEEEcC
Q 025892 187 PAFSYEETVQTAVSALQSVLQEDFKAT-EIEVGVVRSDDRVFRVLS 231 (246)
Q Consensus 187 ~~~s~~ea~~l~~~al~~~~~~d~~~~-~iei~iv~~~~~~~~~l~ 231 (246)
++||++||++++++||..+..||+.++ +++|++|+++++ ++.+.
T Consensus 173 ~~ms~eEA~~la~~al~~a~~rD~~sg~~iev~vI~kdg~-~~~~~ 217 (261)
T 3nzj_H 173 QDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKD-AEYLR 217 (261)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEEETTSC-EEEEE
T ss_pred cCCCHHHHHHHHHHHHHHHHhhCCCCCCcEEEEEEECCCc-EEEec
Confidence 899999999999999999999998665 899999999985 55443
No 38
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=100.00 E-value=1.7e-45 Score=303.53 Aligned_cols=195 Identities=17% Similarity=0.201 Sum_probs=180.9
Q ss_pred ceEEEEEcCCeEEEEEeccCC-CcccccCCceeeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q 025892 37 ITSIGVRGKDSVCVVTQKKVP-DKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLS 115 (246)
Q Consensus 37 ~tvigi~~~dgVvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 115 (246)
||+|||+++||||||+|+|.+ +.++.+++.+||++|++|++|+++|+.+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (199)
T 3unf_N 1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAA 80 (199)
T ss_dssp CEEEEEECSSCEEEEECCCEEETTEEEESSCCCEEEEETTEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred CeEEEEEeCCeEEEEECCcccCCceeEccccCceEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 699999999999999999999 5688889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCceeeee-eEEEecCChHHHHHHHHhhccCCCCCCHHHH
Q 025892 116 RWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGH-KATSAGLKEQEAINFLEKKMKNDPAFSYEET 194 (246)
Q Consensus 116 ~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~-~~~a~G~g~~~~~~~Le~~~~~~~~~s~~ea 194 (246)
+++++.++.| +|||++++||||||+.++|+||+ |+|++.++ .++++|+|+++++++||++| +++||++||
T Consensus 81 ~~l~~~l~~~-----~~p~~v~~lvaG~D~~~~p~ly~--p~G~~~~~~~~~~~Gsgs~~a~~~Le~~~--~~~ms~eea 151 (199)
T 3unf_N 81 NVVKNISYKY-----REDLLAHLIVAGWDQREGGQVYG--TMGGMLIRQPFTIGGSGSSYIYGYVDAAY--KPGMTPEEC 151 (199)
T ss_dssp HHHHHHHHHT-----TTTCCCCEEEEEEETTTEEEEEE--CGGGCCEECSEEEEEGGGGGGHHHHHHHC--CSSCCHHHH
T ss_pred HHHHHHHHhc-----CCCceEEEEEEEEeCCCCcEEEE--ECCCceecCCEEEEccCHHHHHHHHHhhc--CCCCCHHHH
Confidence 9999999764 46999999999999867899999 99998766 46667999999999999996 689999999
Q ss_pred HHHHHHHHHHhhhccCCC-CcEEEEEEEeCCceEEEcCHHHHHHHHH
Q 025892 195 VQTAVSALQSVLQEDFKA-TEIEVGVVRSDDRVFRVLSSEEIDEHLT 240 (246)
Q Consensus 195 ~~l~~~al~~~~~~d~~~-~~iei~iv~~~~~~~~~l~~~ei~~~~~ 240 (246)
++++++||..+.+||+.+ ++++|++|++++..++.++++||+++++
T Consensus 152 ~~la~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~l~~~ei~~~~~ 198 (199)
T 3unf_N 152 RRFTTNAITLAMNRDGSSGGVIYLVTITAAGVDHRVILGDELPKFYD 198 (199)
T ss_dssp HHHHHHHHHHHHHHCTTCCSCEEEEEECSSCEEEEEECGGGSCCCCC
T ss_pred HHHHHHHHHHHHHhccccCCCeEEEEEcCCCEEEEEcCcccCccccc
Confidence 999999999999999876 4899999999987899999999987754
No 39
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=100.00 E-value=7.6e-45 Score=306.57 Aligned_cols=192 Identities=19% Similarity=0.291 Sum_probs=178.6
Q ss_pred ceEEEEEcCCeEEEEEeccCC-CcccccCCceeeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q 025892 37 ITSIGVRGKDSVCVVTQKKVP-DKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLS 115 (246)
Q Consensus 37 ~tvigi~~~dgVvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 115 (246)
||+|||+++||||||+|+|.+ +.++..++.+||++|++|++|++||+.+|++.+.++++.++++|+++++++++++.++
T Consensus 1 TT~vgi~~kdgVVlaaD~r~t~g~~v~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 3unf_H 1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVT 80 (234)
T ss_dssp CEEEEEECSSEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEECCCcccCCEeccCccccEEEecCCEEEEecccHHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Confidence 699999999999999999999 4556678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCceeeeeeEEEecCChHHHHHHHHhhccCCCCCCHHHHH
Q 025892 116 RWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFSYEETV 195 (246)
Q Consensus 116 ~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~s~~ea~ 195 (246)
+++++.++.| .+||++++||||||+ +||+||++||+|++.++++.|+|+|++.++++||+.| +++|+++||+
T Consensus 81 ~~l~~~l~~~-----~~p~~v~llvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~--~~~ms~eeA~ 152 (234)
T 3unf_H 81 RILRQTLFRY-----QGHVGASLVVGGVDL-NGPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDRF--QPNMTLEAAQ 152 (234)
T ss_dssp HHHHHHHHHT-----TTCSCEEEEEEEEET-TEEEEEEECTTSCEEECSEEEEETTHHHHHHHHHHHC--CSSCCHHHHH
T ss_pred HHHHHHHHhc-----CCCccEEEEEEEEeC-CCCEEEEECCCCCEEeccEEEEcCCchhhHHHHHhcc--CCCCCHHHHH
Confidence 9999999765 469999999999997 7999999999999999999999999999999999995 7899999999
Q ss_pred HHHHHHHHHhhhccCCCC-cEEEEEEEeCCceEEEcCHHHHHHH
Q 025892 196 QTAVSALQSVLQEDFKAT-EIEVGVVRSDDRVFRVLSSEEIDEH 238 (246)
Q Consensus 196 ~l~~~al~~~~~~d~~~~-~iei~iv~~~~~~~~~l~~~ei~~~ 238 (246)
+++++||..+..+|+.++ +++|++|++++ ++.+.+.+|+.-
T Consensus 153 ~la~~al~~~~~~D~~sg~~iev~vi~~dg--~~~l~~~~i~~~ 194 (234)
T 3unf_H 153 ELLVEAITAGILSDLGSGGNVDACVITAGG--AKLQRALSTPTE 194 (234)
T ss_dssp HHHHHHHHHHHHHBTTCCSCEEEEEEESSC--EEEEEEEECCCC
T ss_pred HHHHHHHHHHHhhcCCCCCcEEEEEEECCC--EEEeCceecccc
Confidence 999999999999998654 89999999985 899888877543
No 40
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=100.00 E-value=3.1e-44 Score=300.94 Aligned_cols=190 Identities=19% Similarity=0.316 Sum_probs=175.1
Q ss_pred cCceEEEEEcCCeEEEEEeccCCC-cccccCCceeeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcC-CCCCHH
Q 025892 35 TAITSIGVRGKDSVCVVTQKKVPD-KLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFG-YEMPVD 112 (246)
Q Consensus 35 ~G~tvigi~~~dgVvlaad~~~~~-~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~-~~~~~~ 112 (246)
+|+|+|||+++||||||+|+|.+. .++..++.+||++|++|++|+++|+.+|++.|.+.++.+++.|+++++ ++++++
T Consensus 8 ~Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~v~ 87 (222)
T 1ryp_M 8 NGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHNDKKLSIN 87 (222)
T ss_dssp CCCEEEEEECSSCEEEEEECCEEETTEEEESCCCCCEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHTTTCCCCHH
T ss_pred CCccEEEEEeCCEEEEEEecccccCCEecCCCcCcEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCCHH
Confidence 599999999999999999999994 556778999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCceeeeeeEEEecCChHHHHHHHHhhcc--------
Q 025892 113 VLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMK-------- 184 (246)
Q Consensus 113 ~la~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~-------- 184 (246)
.+|+++++.+ |+++ .+||++++||||||++++|+||.+||.|++.+++++|+|+|+++++++||+.++
T Consensus 88 ~la~~l~~~l--y~~r--~~P~~v~~ivaG~D~~g~p~Ly~~dp~G~~~~~~~~a~Gsg~~~a~~~Le~~~~~~~~~~~~ 163 (222)
T 1ryp_M 88 SAARNIQHLL--YGKR--FFPYYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQYEPG 163 (222)
T ss_dssp HHHHHHHHHH--HTTT--TSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTSCTTCBCTT
T ss_pred HHHHHHHHHH--HhcC--CCCceEEEEEEEEcCCCCeEEEEECCCcCEEecCEEEEcCcHHHHHHHHhcccccccccccc
Confidence 9999999998 5433 679999999999997566999999999999999999999999999999999864
Q ss_pred -------CCCCCCHHHHHHHHHHHHHHhhhccCCCC-cEEEEEEEeCCceEE
Q 025892 185 -------NDPAFSYEETVQTAVSALQSVLQEDFKAT-EIEVGVVRSDDRVFR 228 (246)
Q Consensus 185 -------~~~~~s~~ea~~l~~~al~~~~~~d~~~~-~iei~iv~~~~~~~~ 228 (246)
|+++||++||++++++||..+.+||+.++ +++|++|++++...+
T Consensus 164 ~~~~~~~~~~~~s~eeA~~la~~al~~a~~rd~~sg~~i~v~vi~~~g~~~~ 215 (222)
T 1ryp_M 164 TNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIVTKDGVRKE 215 (222)
T ss_dssp STTCSBCCCCCCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEEE
T ss_pred cccccccCCCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEcCCCeEEE
Confidence 57899999999999999999999998764 899999999875333
No 41
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=100.00 E-value=1.2e-43 Score=293.85 Aligned_cols=191 Identities=17% Similarity=0.256 Sum_probs=174.1
Q ss_pred cCceEEEEEcCCeEEEEEeccCCCc-ccccCCceeeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHH
Q 025892 35 TAITSIGVRGKDSVCVVTQKKVPDK-LLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDV 113 (246)
Q Consensus 35 ~G~tvigi~~~dgVvlaad~~~~~~-l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 113 (246)
+|+|+|||+++||||||+|+|.+.. ++..++.+||++|++|++|++||+.+|++.|.++++.+++.|+++++++++++.
T Consensus 7 ~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~ 86 (205)
T 1iru_J 7 NGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPYT 86 (205)
T ss_dssp SCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHHHHHHHSSSCCCHHH
T ss_pred CCCeEEEEEeCCEEEEEECCccccCCeEeecCCccEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHhhcCCCCCHHH
Confidence 5999999999999999999999954 444558899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhccCCCCCccceeEEEEEeC-CCCcEEEEEcCCceeeee-eEEEecCChHHHHHHHHhhccCCCCCCH
Q 025892 114 LSRWIADKSQVYTQHAYMRPLGVVAMVLGIDE-EKGPQLYKCDPAGHFFGH-KATSAGLKEQEAINFLEKKMKNDPAFSY 191 (246)
Q Consensus 114 la~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~-~~gp~Ly~id~~G~~~~~-~~~a~G~g~~~~~~~Le~~~~~~~~~s~ 191 (246)
+++++++.+ |+++ ..||++++||||||+ ++||+||.+||+|++.++ .++|+|+|+++++++||+.| +++||+
T Consensus 87 la~~l~~~~--y~~r--~~P~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~--~~~~s~ 160 (205)
T 1iru_J 87 LMSMVANLL--YEKR--FGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLW--EPNMDP 160 (205)
T ss_dssp HHHHHHHHH--HTTT--TSCCSCCCEEEEECTTSCCEEEEEECTTCCEEECSSEEEEETTHHHHHHHHHHHC--CSSCCH
T ss_pred HHHHHHHHH--HHhc--CCCceEEEEEEEEeCCCCCeEEEEECCCCCccccCCeeEeeeCHHHHHHHHhccc--CCCCCH
Confidence 999999999 7665 349999999999995 478999999999999766 66999999999999999996 789999
Q ss_pred HHHHHHHHHHHHHhhhccCCCC-cEEEEEEEeCCceEEEcC
Q 025892 192 EETVQTAVSALQSVLQEDFKAT-EIEVGVVRSDDRVFRVLS 231 (246)
Q Consensus 192 ~ea~~l~~~al~~~~~~d~~~~-~iei~iv~~~~~~~~~l~ 231 (246)
+||++++++||..+.+||+.++ +++|++|++++..++.+.
T Consensus 161 eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~~~ 201 (205)
T 1iru_J 161 DHLFETISQAMLNAVDRDAVSGMGVIVHIIEKDKITTRTLK 201 (205)
T ss_dssp HHHHHHHHHHHHHHGGGBTTSCSCEEEEEEESSBEEEEEBC
T ss_pred HHHHHHHHHHHHHHHHhCcccCCceEEEEEcCCCEEEEEee
Confidence 9999999999999999998764 899999999986565554
No 42
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=100.00 E-value=3.7e-43 Score=290.72 Aligned_cols=190 Identities=19% Similarity=0.223 Sum_probs=173.0
Q ss_pred cCceEEEEEcCCeEEEEEeccCCCc-ccccCCceeeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHH
Q 025892 35 TAITSIGVRGKDSVCVVTQKKVPDK-LLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDV 113 (246)
Q Consensus 35 ~G~tvigi~~~dgVvlaad~~~~~~-l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 113 (246)
+|+|+|||+++||||||+|+|.+.. ++..++.+||++|+ |++|+++|+.+|++.|.++++.+++.|+++++++++++.
T Consensus 7 ~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~ 85 (204)
T 1ryp_J 7 NGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEMFRYKTNLYKLKEERAIEPET 85 (204)
T ss_dssp SCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEET-TEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHH
T ss_pred CCCeEEEEEeCCEEEEEEcCCcccCCEEeeCCcceEEEeC-CEEEEeeEcHHHHHHHHHHHHHHHHHHhhccCCCCCHHH
Confidence 5999999999999999999999954 44455899999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhccCCCCCccceeEEEEEeC-CCCcEEEEEcCCceeeee-eEEEecCChHHHHHHHHhhccCCCCCCH
Q 025892 114 LSRWIADKSQVYTQHAYMRPLGVVAMVLGIDE-EKGPQLYKCDPAGHFFGH-KATSAGLKEQEAINFLEKKMKNDPAFSY 191 (246)
Q Consensus 114 la~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~-~~gp~Ly~id~~G~~~~~-~~~a~G~g~~~~~~~Le~~~~~~~~~s~ 191 (246)
+++++++.+ |+++.+ ||++++||||||+ ++||+||.+||+|++.++ .++|+|+|+++++++||+.| +++||+
T Consensus 86 la~~l~~~~--y~~~~~--P~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~--~~~~s~ 159 (204)
T 1ryp_J 86 FTQLVSSSL--YERRFG--PYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLY--EPNLEP 159 (204)
T ss_dssp HHHHHHHHH--HTTTTS--CCCEEEEEEEECTTTCCEEEEEECTTCCEECCSSEEEEETTHHHHHHHHHHHC--CSSCCH
T ss_pred HHHHHHHHH--HHhcCC--CceEEEEEEEEeCCCCceEEEEECCCCCccccCceeEeccCHHHHHHHHhhhc--CCCcCH
Confidence 999999999 776543 9999999999996 478999999999999766 67999999999999999996 789999
Q ss_pred HHHHHHHHHHHHHhhhccCCC-CcEEEEEEEeCCceEEEcC
Q 025892 192 EETVQTAVSALQSVLQEDFKA-TEIEVGVVRSDDRVFRVLS 231 (246)
Q Consensus 192 ~ea~~l~~~al~~~~~~d~~~-~~iei~iv~~~~~~~~~l~ 231 (246)
+||++++++||..+.++|..+ ++++|++|++++..++.+.
T Consensus 160 eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~~~ 200 (204)
T 1ryp_J 160 EDLFETISQALLNAADRDALSGWGAVVYIIKKDEVVKRYLK 200 (204)
T ss_dssp HHHHHHHHHHHHHHHTTBTTSCSCEEEEEEESSCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHhCcccCCcEEEEEEcCCCEEEEEee
Confidence 999999999999999999765 5899999999986555543
No 43
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=100.00 E-value=1.1e-43 Score=293.25 Aligned_cols=189 Identities=18% Similarity=0.291 Sum_probs=173.4
Q ss_pred ceEEEEEcCCeEEEEEeccCC-CcccccCCceeeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q 025892 37 ITSIGVRGKDSVCVVTQKKVP-DKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLS 115 (246)
Q Consensus 37 ~tvigi~~~dgVvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 115 (246)
+|+|||+++||||||+|+|.+ +.++.+++.+||++|++|++|+++|+.+|++.+.++++.+++.|+++++++++++.++
T Consensus 2 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 81 (201)
T 1iru_K 2 EYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAA 81 (201)
T ss_dssp CCEEEEECSSEEEEEEECCEEETTEEEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEccCcceEEEecCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 699999999999999999999 5788889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCceeeeeeEEEecCChHHHHHHHHhhccCCCCCCHHHHH
Q 025892 116 RWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFSYEETV 195 (246)
Q Consensus 116 ~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~s~~ea~ 195 (246)
+++++.+..+ .+ ..|||++++||||||+++||+||.+||+|++.+++++|+|+|+++++++||+.| +++||++||+
T Consensus 82 ~~~~~~l~~~-~~-~~~p~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~--~~~~s~eea~ 157 (201)
T 1iru_K 82 NFTRRNLADC-LR-SRTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYY--TPTISRERAV 157 (201)
T ss_dssp HHHHHHHHHH-HT-SSSCCCEEEEEEEEETTTEEEEEEECTTCCEEECSEEEESHHHHHHHHHHHHHC--CTTCCHHHHH
T ss_pred HHHHHHHHHH-Hh-cCCCccEEEEEEEEeCCCCeEEEEECCCcCeEECCEEEECCcHHHHHHHHHhcc--cCCCCHHHHH
Confidence 9998765222 12 237999999999999767899999999999999999999999999999999995 7899999999
Q ss_pred HHHHHHHHHhhhccCCCC-cEEEEEEEeCCceEEEcC
Q 025892 196 QTAVSALQSVLQEDFKAT-EIEVGVVRSDDRVFRVLS 231 (246)
Q Consensus 196 ~l~~~al~~~~~~d~~~~-~iei~iv~~~~~~~~~l~ 231 (246)
+++++||..+.+||+.++ +++|++|++++ ++.+.
T Consensus 158 ~l~~~al~~a~~rd~~sg~~i~v~vi~~~g--~~~~~ 192 (201)
T 1iru_K 158 ELLRKCLEELQKRFILNLPTFSVRIIDKNG--IHDLD 192 (201)
T ss_dssp HHHHHHHHHHHHTBCBCCCCEEEEEEETTE--EECCC
T ss_pred HHHHHHHHHHHhhccccCCceEEEEEcCCC--eEEee
Confidence 999999999999998765 89999999985 66655
No 44
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=100.00 E-value=3e-43 Score=294.89 Aligned_cols=186 Identities=18% Similarity=0.226 Sum_probs=173.0
Q ss_pred ceEEEEEcCCeEEEEEeccCC-CcccccCCceeeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q 025892 37 ITSIGVRGKDSVCVVTQKKVP-DKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLS 115 (246)
Q Consensus 37 ~tvigi~~~dgVvlaad~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 115 (246)
+|+|||+++||||||+|+|.+ +.++..++.+||++|++|++|++||+.+|++.|.++++.+++.|+++++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~t~g~~~~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (222)
T 1ryp_I 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSAL 80 (222)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEEcCCcccCCeeecCCcccEEEecCCEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 589999999999999999999 5556677899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCceeeeeeEEEecCChHHHHHHHHhhccCCCCCCHHHHH
Q 025892 116 RWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFSYEETV 195 (246)
Q Consensus 116 ~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~s~~ea~ 195 (246)
+++++.++.| .|||++++||||||+ +||+||.+||+|++.+++++|+|+|++.++++||+.| +++||++||+
T Consensus 81 ~~l~~~l~~~-----~~p~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~--~~~ms~eeA~ 152 (222)
T 1ryp_I 81 QMLKQHLFKY-----QGHIGAYLIVAGVDP-TGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHW--KQDLTKEEAI 152 (222)
T ss_dssp HHHHHHHHHT-----TTCSCEEEEEEEEET-TEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHC--CSSCCHHHHH
T ss_pred HHHHHHHhhc-----CCCCCeeEEEEEEeC-CCCEEEEECCCCCEEecCEEEECCCHHHHHHHHHhhC--CCCcCHHHHH
Confidence 9999998765 479999999999997 7899999999999999999999999999999999995 7899999999
Q ss_pred HHHHHHHHHhhhccCCCC-cEEEEEEEeCCceEEEcC
Q 025892 196 QTAVSALQSVLQEDFKAT-EIEVGVVRSDDRVFRVLS 231 (246)
Q Consensus 196 ~l~~~al~~~~~~d~~~~-~iei~iv~~~~~~~~~l~ 231 (246)
+++++||..+.+||+.++ +++|++++++++ ++.+.
T Consensus 153 ~la~~al~~~~~~d~~sg~~i~v~vi~~~g~-~~~~~ 188 (222)
T 1ryp_I 153 KLASDAIQAGIWNDLGSGSNVDVCVMEIGKD-AEYLR 188 (222)
T ss_dssp HHHHHHHHHHHHHCTTCCSCEEEEEEETTSC-EEEEE
T ss_pred HHHHHHHHHHHhccccCCCcEEEEEEECCCC-EEEEe
Confidence 999999999999998764 899999999873 66554
No 45
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=100.00 E-value=2.7e-42 Score=291.20 Aligned_cols=187 Identities=18% Similarity=0.241 Sum_probs=172.8
Q ss_pred ceEEEEEcCCeEEEEEeccCCC-cccccCCceeeEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q 025892 37 ITSIGVRGKDSVCVVTQKKVPD-KLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLS 115 (246)
Q Consensus 37 ~tvigi~~~dgVvlaad~~~~~-~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 115 (246)
+|+|||+++||||||+|+|.+. .++..++.+||++|++|++|++||+.+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 TTivgi~~~dgVVlaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 1iru_I 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTAN 80 (234)
T ss_dssp CCEEEEEETTEEEEEECCCEESSSBEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCceeccCcccceEEecCCEEEEecCcHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 5899999999999999999994 455567889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCceeeeeeEEEecCChHHHHHHHHhhccCCCCCCHHHHH
Q 025892 116 RWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFSYEETV 195 (246)
Q Consensus 116 ~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~s~~ea~ 195 (246)
+++++.++.| .+||++++||||||+ +||+||.+||+|++.+++++|+|+|++.++++||+.| +++||++||+
T Consensus 81 ~~l~~~l~~~-----~~~~~v~llvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~--~~~ms~eeA~ 152 (234)
T 1iru_I 81 RMLKQMLFRY-----RGYIGAALVLGGVDV-TGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKF--RPDMEEEEAK 152 (234)
T ss_dssp HHHHHHHHHT-----TTCSCEEEEEEEECS-SCEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHSC--CTTCCHHHHH
T ss_pred HHHHHHHHhc-----CCCCceeEEEEEEcC-CCCEEEEECCCCCEEecCEEEECCchHHHHHHHHHhc--cCCCCHHHHH
Confidence 9999999765 359999999999997 7899999999999999999999999999999999995 7899999999
Q ss_pred HHHHHHHHHhhhccCCC-CcEEEEEEEeCCceEEEcCHH
Q 025892 196 QTAVSALQSVLQEDFKA-TEIEVGVVRSDDRVFRVLSSE 233 (246)
Q Consensus 196 ~l~~~al~~~~~~d~~~-~~iei~iv~~~~~~~~~l~~~ 233 (246)
+++++||..+..+|+.+ ++++|++|++++ ++.+.+.
T Consensus 153 ~la~~al~~a~~~d~~sg~~i~v~vi~k~g--~~~~~~~ 189 (234)
T 1iru_I 153 NLVSEAIAAGIFNDLGSGSNIDLCVISKNK--LDFLRPY 189 (234)
T ss_dssp THHHHHHHHHHHHCTTCCSCEEEEEEETTE--EECCSEE
T ss_pred HHHHHHHHHHHHhcccCCCCEEEEEEECCc--EEEEcce
Confidence 99999999999999876 489999999985 7766543
No 46
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=100.00 E-value=3.6e-36 Score=244.15 Aligned_cols=167 Identities=17% Similarity=0.159 Sum_probs=147.3
Q ss_pred cCceEEEEEcCCeEEEEEeccCC-Ccc-cccCCceeeEEe-cCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCH
Q 025892 35 TAITSIGVRGKDSVCVVTQKKVP-DKL-LDQTCVTHLFPI-TKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPV 111 (246)
Q Consensus 35 ~G~tvigi~~~dgVvlaad~~~~-~~l-~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 111 (246)
+|+|+|||+++||||||+|+|.+ +.+ +.+++.+||++| ++|++|+++|+.+|++.|.++++.+++.|+ + +
T Consensus 4 ~GtTivgi~~~dgVvlaaD~r~t~g~~~i~~~~~~KI~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~y~---g--~-- 76 (180)
T 2z3b_A 4 HATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYN---G--N-- 76 (180)
T ss_dssp CCCCEEEEEETTEEEEEECCCEEETTTEEEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHHHHHHTT---T--C--
T ss_pred CCeEEEEEEECCEEEEEECCCccCCCceEecCCCCcEEEECCCCEEEEeCchHHHHHHHHHHHHHHHHHhc---C--C--
Confidence 59999999999999999999999 578 889999999999 999999999999999999999999999987 3 2
Q ss_pred HHHHHHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCceeee--eeEEEecCChHHHHHHHHhhccCCC--
Q 025892 112 DVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFG--HKATSAGLKEQEAINFLEKKMKNDP-- 187 (246)
Q Consensus 112 ~~la~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~--~~~~a~G~g~~~~~~~Le~~~~~~~-- 187 (246)
+.+.++++.+.+++....|||++++||| | +|+||.+||+|++.+ ++++|+|+|+++++++||++| ++
T Consensus 77 --~~~~~~~l~~~~~~~~~~rp~~~~~lva--d---~p~ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~--~~~~ 147 (180)
T 2z3b_A 77 --LKRAAVELAKEWRSDKVLRKLEAMLIVM--N---QDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALK--KHAG 147 (180)
T ss_dssp --HHHHHHHHHHHHHHCTTGGGCCCCEEEE--C---SSCEEEECTTCCEECCSSSEEEESTTHHHHHHHHHHHH--HHHG
T ss_pred --hHHHHHHHHHHHHhhhCcCcceEEEEEE--c---CCeEEEECCCCcEEEeCCCEEEECCCHHHHHHHHHHhh--hccC
Confidence 2333334455566677789999999999 3 699999999999998 499999999999999999997 44
Q ss_pred -CCCHHHHHHHHHHHHHHhhhccCCCC-cEEEEEE
Q 025892 188 -AFSYEETVQTAVSALQSVLQEDFKAT-EIEVGVV 220 (246)
Q Consensus 188 -~~s~~ea~~l~~~al~~~~~~d~~~~-~iei~iv 220 (246)
+||.+| ++++||..+.+||+.++ +++|.+|
T Consensus 148 ~~mt~ee---l~~~al~~a~~rd~~sg~~i~v~~i 179 (180)
T 2z3b_A 148 ESMSASE---IARAALETAGEICVYTNDQIILEEL 179 (180)
T ss_dssp GGCCHHH---HHHHHHHHHHHHCTTCCSCCEEEEE
T ss_pred CCCCHHH---HHHHHHHHHHHhcCccCCeEEEEEE
Confidence 899999 47899999999998876 8999887
No 47
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=100.00 E-value=1.3e-35 Score=238.95 Aligned_cols=166 Identities=14% Similarity=0.115 Sum_probs=144.7
Q ss_pred ceEEEEEcCCeEEEEEeccCC-CcccccCCceeeEEe-cCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Q 025892 37 ITSIGVRGKDSVCVVTQKKVP-DKLLDQTCVTHLFPI-TKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVL 114 (246)
Q Consensus 37 ~tvigi~~~dgVvlaad~~~~-~~l~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 114 (246)
+|+|||+++||||||+|+|.+ +.++.+++.+||++| ++|++|+++|+.+|++.|.++++.+++.|+.+ .++.+
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~-----~~~~~ 75 (171)
T 1m4y_A 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGN-----LTKAA 75 (171)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTC-----HHHHH
T ss_pred CeEEEEEECCEEEEEECCCcccCCEEEeCCcceEEEeCCCCEEEEeCccHHHHHHHHHHHHHHHHHhccc-----HHHHH
Confidence 589999999999999999999 688889999999999 99999999999999999999999999998744 14444
Q ss_pred HHHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCceeeeee--EEEecCChHHHHHHHHhhccCCCCCCHH
Q 025892 115 SRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHK--ATSAGLKEQEAINFLEKKMKNDPAFSYE 192 (246)
Q Consensus 115 a~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~~--~~a~G~g~~~~~~~Le~~~~~~~~~s~~ 192 (246)
+++ .+.+++++..|||++++|+| | ||+||.+||+|++.+++ +.|+|+|+++++++||+.|++ ++||.
T Consensus 76 ~~l----~~~~~~~~~~~~~~~~~lv~--D---~p~Ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~-~~ms~- 144 (171)
T 1m4y_A 76 VEL----AKDWRTDRVLRRLEALLLVA--D---KENIFIISGNGEVIQPDDDAAAIGSGGPYALAAAKALLRN-TDLSA- 144 (171)
T ss_dssp HHH----HHHHHHCTTGGGCCCEEEEE--C---SSCEEEECTTSCEECCSSSEEEESTTHHHHHHHHHHHHHH-CCCCH-
T ss_pred HHH----HHHHHHhCCCCceEEEEEEE--c---CCEEEEECCCCCEEecCCCEEEECCcHHHHHHHHHHhccc-CCCCH-
Confidence 444 33455566678999999998 5 79999999999999988 999999999999999999732 78996
Q ss_pred HHHHHHHHHHHHhhhccCCCC-cEEEEEE
Q 025892 193 ETVQTAVSALQSVLQEDFKAT-EIEVGVV 220 (246)
Q Consensus 193 ea~~l~~~al~~~~~~d~~~~-~iei~iv 220 (246)
++++++||+.+.+||+.++ +++|.++
T Consensus 145 --~~l~~~al~~a~~rd~~sg~~i~v~~~ 171 (171)
T 1m4y_A 145 --REIVEKAMTIAGEICIYTNQNIVIEEV 171 (171)
T ss_dssp --HHHHHHHHHHHHHHCTTCCSCCEEEEC
T ss_pred --HHHHHHHHHHHHHhCcccCCeEEEEEC
Confidence 6789999999999998765 7888763
No 48
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=100.00 E-value=2.5e-35 Score=237.93 Aligned_cols=167 Identities=13% Similarity=0.076 Sum_probs=144.8
Q ss_pred ceEEEEEcCCeEEEEEeccCC-CcccccCCceeeEEe-cCcEEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Q 025892 37 ITSIGVRGKDSVCVVTQKKVP-DKLLDQTCVTHLFPI-TKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVL 114 (246)
Q Consensus 37 ~tvigi~~~dgVvlaad~~~~-~~l~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 114 (246)
+|+|||+++||||||+|+|.+ +.++.+++.+||++| ++|++|+++|+.+|++.|.++++.+++.|++ +.
T Consensus 1 tT~vgi~~~dgVvlaaD~r~t~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~------~~--- 71 (174)
T 1g3k_A 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQG------HL--- 71 (174)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTT------CH---
T ss_pred CeEEEEEECCEEEEEECCCCccCCeeEeCCCCcEEEECCCCEEEEeCccHHHHHHHHHHHHHHHHHhcC------cH---
Confidence 589999999999999999999 568889999999999 9999999999999999999999999999875 33
Q ss_pred HHHHHHHhhhhhccCCCCCccceeEEEEEeCCCCcEEEEEcCCceeeeee---EEEecCChHHHHHHHHhhccCCCCCCH
Q 025892 115 SRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHK---ATSAGLKEQEAINFLEKKMKNDPAFSY 191 (246)
Q Consensus 115 a~~l~~~~~~~t~~~~~rP~~v~~iv~G~D~~~gp~Ly~id~~G~~~~~~---~~a~G~g~~~~~~~Le~~~~~~~~~s~ 191 (246)
.+.++.+.+.+++++..||+ +++++|+| +|+||.+||+|++.+++ +.|+|+|+++++++||++|+ .++||.
T Consensus 72 ~~~~~~l~~~~~~~~~~r~~--~~~l~g~d---~p~Ly~~d~~G~~~~~~~~~~~a~Gsgs~~a~~~le~~~~-~~~mt~ 145 (174)
T 1g3k_A 72 LKSAVELAKDWRTDRALRKL--EAMLIVAD---EKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVE-NTELSA 145 (174)
T ss_dssp HHHHHHHHHHHHHSTTGGGC--CCEEEEEC---SSCEEEEETTTEEECCCTTCEEEESTTHHHHHHHHHHHHH-HCCCCH
T ss_pred HHHHHHHHHHHHhccCcCcc--eEEEEEEC---CCEEEEEcCCCcEEecCCCcEEEEcccHHHHHHHHHHhcc-cCCCCH
Confidence 33444444555666667776 46778887 69999999999999988 99999999999999999973 178995
Q ss_pred HHHHHHHHHHHHHhhhccCCCC-cEEEEEEE
Q 025892 192 EETVQTAVSALQSVLQEDFKAT-EIEVGVVR 221 (246)
Q Consensus 192 ~ea~~l~~~al~~~~~~d~~~~-~iei~iv~ 221 (246)
+ +++++||+.+.+||+.++ +++|++|+
T Consensus 146 ~---~l~~~al~~a~~rd~~sg~~i~v~~i~ 173 (174)
T 1g3k_A 146 H---EIVEKSLRIAGDICVFTNTNFTIEELP 173 (174)
T ss_dssp H---HHHHHHHHHHHHHCTTCCSCCEEEEEC
T ss_pred H---HHHHHHHHHHHHhccccCCceEEEEec
Confidence 4 799999999999998765 89999985
No 49
>1yo5_C SAM pointed domain containing ETS transcription factor; protein-DNA complex, double helix, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.4.5.21
Probab=56.99 E-value=17 Score=25.40 Aligned_cols=26 Identities=8% Similarity=0.229 Sum_probs=21.5
Q ss_pred EEEEEeCCceEEEcCHHHHHHHHHHh
Q 025892 217 VGVVRSDDRVFRVLSSEEIDEHLTAI 242 (246)
Q Consensus 217 i~iv~~~~~~~~~l~~~ei~~~~~~i 242 (246)
|.+.+++.+.|+.++|++|.+.+..-
T Consensus 31 I~W~~~~~g~Fkl~d~~~VArlWG~r 56 (97)
T 1yo5_C 31 IRWLNKEKGIFKIEDSAQVARLWGIR 56 (97)
T ss_dssp EEEEETTTTEEEESCHHHHHHHHHHH
T ss_pred eEeecCCCCEEEecCHHHHHHHHHhc
Confidence 56787766679999999999998853
No 50
>2dao_A Transcription factor ETV6; ETS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.61 E-value=22 Score=25.73 Aligned_cols=26 Identities=8% Similarity=0.267 Sum_probs=22.1
Q ss_pred EEEEEeCCceEEEcCHHHHHHHHHHh
Q 025892 217 VGVVRSDDRVFRVLSSEEIDEHLTAI 242 (246)
Q Consensus 217 i~iv~~~~~~~~~l~~~ei~~~~~~i 242 (246)
|.+.+++++.|+.++|++|.+.+..-
T Consensus 28 I~W~~~~~g~Fklvdp~~VArlWG~r 53 (118)
T 2dao_A 28 IRWEDKESKIFRIVDPNGLARLWGNH 53 (118)
T ss_dssp EEEEEGGGTEEEESCHHHHHHHHHHH
T ss_pred eEeeCCCCCeEEEeCHHHHHHHHHhc
Confidence 77888776679999999999998853
No 51
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=44.54 E-value=37 Score=23.21 Aligned_cols=50 Identities=14% Similarity=0.181 Sum_probs=39.1
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEeCCceEEEcCHHHHHHHHH
Q 025892 186 DPAFSYEETVQTAVSALQSVLQEDFKATEIEVGVVRSDDRVFRVLSSEEIDEHLT 240 (246)
Q Consensus 186 ~~~~s~~ea~~l~~~al~~~~~~d~~~~~iei~iv~~~~~~~~~l~~~ei~~~~~ 240 (246)
.++++.++..+.++..++.. ....+.+.+++++|......+.+|+++.++
T Consensus 23 ~~~i~~~~L~~kv~~~~~~~-----~~~~f~lky~DEeGD~itisSd~EL~eAl~ 72 (89)
T 1vd2_A 23 EPSISFEGLCNEVRDMCSFD-----NEQLFTMKWIDEEGDPCTVSSQLELEEAFR 72 (89)
T ss_dssp CTTCCHHHHHHHHHHHTTCC-----SSCCEEEEECCSSSCCEECCSHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhCCC-----CCCeEEEEEECCCCCcccccCHHHHHHHHH
Confidence 45788888888777755521 224699999999887788999999999987
No 52
>3jtg_A ETS-related transcription factor ELF-3; ELF3, protein-DNA complex, type II TGF-beta receptor, activa alternative splicing, cytoplasm; HET: DNA; 2.20A {Mus musculus} SCOP: a.4.5.21
Probab=44.09 E-value=34 Score=24.08 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=21.9
Q ss_pred EEEEEeCCceEEEcCHHHHHHHHHHh
Q 025892 217 VGVVRSDDRVFRVLSSEEIDEHLTAI 242 (246)
Q Consensus 217 i~iv~~~~~~~~~l~~~ei~~~~~~i 242 (246)
|.+++++.+.|+.++|++|.+.+..-
T Consensus 25 I~W~~~~~g~Fkl~dp~~VArlWG~r 50 (103)
T 3jtg_A 25 MKWENRHEGVFKFLRSEAVAQLWGQK 50 (103)
T ss_dssp EEEEETTTTEEEESSHHHHHHHHHHH
T ss_pred cccccCCCceEEecCHHHHHHHHHhc
Confidence 77888776679999999999998753
No 53
>2hc5_A ORF 99, hypothetical protein YVYC; NESG, GFT-PSI, protein structure initiative, northeast structural genomics consortium, alpha-beta, FLAG; NMR {Bacillus subtilis} SCOP: d.352.1.1
Probab=41.79 E-value=62 Score=23.23 Aligned_cols=32 Identities=19% Similarity=0.275 Sum_probs=26.1
Q ss_pred CCcEEEEEEEeCCc-eEEEcCHHHHHHHHHHhh
Q 025892 212 ATEIEVGVVRSDDR-VFRVLSSEEIDEHLTAIS 243 (246)
Q Consensus 212 ~~~iei~iv~~~~~-~~~~l~~~ei~~~~~~i~ 243 (246)
++.+-|.+++++.+ -.|.++|+++-++.+.+.
T Consensus 66 ~~~~vVkVvD~~TgEVIRqIPpEe~L~l~~~l~ 98 (117)
T 2hc5_A 66 LNEYYVKVIEDSTNEVIREIPPKRWLDFYAAMT 98 (117)
T ss_dssp TTEEEEEEEETTTTEEEEEECHHHHHHHHHHHH
T ss_pred CCcEEEEEEECCCCcEEEeCChHHHHHHHHHHH
Confidence 45688999997755 479999999999888765
No 54
>1wwx_A E74-like factor 5 ESE-2B; DNA binding, transcriptional activation and repression, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.21
Probab=38.95 E-value=28 Score=24.71 Aligned_cols=26 Identities=19% Similarity=0.290 Sum_probs=21.2
Q ss_pred EEEEEeCCceEEEcCHHHHHHHHHHh
Q 025892 217 VGVVRSDDRVFRVLSSEEIDEHLTAI 242 (246)
Q Consensus 217 i~iv~~~~~~~~~l~~~ei~~~~~~i 242 (246)
|.+.+++.+.|+.++|++|.+.+..-
T Consensus 29 I~W~~~~~g~Fkl~d~e~VArlWG~r 54 (107)
T 1wwx_A 29 LEWEDREQGIFRVVKSEALAKMWGQR 54 (107)
T ss_dssp CEEEETTTTEEECSCHHHHHHHHHHH
T ss_pred EEeecCCCCEEEecCHHHHHHHHHhc
Confidence 56778765579999999999998753
No 55
>3rj2_X ORF158L protein, putative uncharacterized protein; histone 3, protein binding; 2.20A {Singapore grouper iridovirus}
Probab=36.72 E-value=10 Score=27.50 Aligned_cols=16 Identities=25% Similarity=0.470 Sum_probs=13.9
Q ss_pred CCccccceeCCCCcch
Q 025892 8 GYDRHITIFSPEGRLF 23 (246)
Q Consensus 8 ~yd~~~t~fsp~Gri~ 23 (246)
+-|+..|.|+|+||+.
T Consensus 54 gm~h~vTfF~~~Grl~ 69 (138)
T 3rj2_X 54 FMRHRVTFFNATGRYI 69 (138)
T ss_dssp TCEEEEEEECTTSCEE
T ss_pred cceeEEEEEcCCCcEE
Confidence 5688999999999875
No 56
>2yxo_A Histidinol phosphatase; metal-dependent, hydrolase; 1.60A {Thermus thermophilus} PDB: 2yz5_A 2z4g_A
Probab=31.98 E-value=29 Score=27.87 Aligned_cols=32 Identities=9% Similarity=0.042 Sum_probs=27.2
Q ss_pred ceeCCCCcchhhhhHHHHHhccCceEEEEEcCC
Q 025892 14 TIFSPEGRLFQVEYAFKAVKATAITSIGVRGKD 46 (246)
Q Consensus 14 t~fsp~Gri~Q~eya~~av~~~G~tvigi~~~d 46 (246)
|.||+||..---|++..|.+ .|-+.||++=.+
T Consensus 8 t~~S~DG~~~~ee~v~~A~~-~Gl~~iaiTDH~ 39 (267)
T 2yxo_A 8 TPLCGHAEGHPEAYLEEARA-KGLKGVVFTDHS 39 (267)
T ss_dssp CGGGSSCCSCHHHHHHHHHH-TTCSEEEEEEEC
T ss_pred cCCCCCCCCCHHHHHHHHHH-cCCCEEEEcCCC
Confidence 68999999988899999998 599999987653
No 57
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=31.33 E-value=29 Score=23.00 Aligned_cols=41 Identities=20% Similarity=0.400 Sum_probs=24.4
Q ss_pred CccccceeCCCCcchhhh-------hHHHHHhccCceEEEEEcCCeEEE
Q 025892 9 YDRHITIFSPEGRLFQVE-------YAFKAVKATAITSIGVRGKDSVCV 50 (246)
Q Consensus 9 yd~~~t~fsp~Gri~Q~e-------ya~~av~~~G~tvigi~~~dgVvl 50 (246)
|...+.+|+|+|.++.++ .|..--...|..++|.+.+ |-++
T Consensus 4 ~~~~i~v~tP~G~~~~lp~GaT~~D~A~~Ih~~lg~~~v~AkVN-G~~v 51 (78)
T 3hvz_A 4 APEEVFVFTPKGDVISLPIGSTVIDFAYAIHSAVGNRMIGAKVD-GRIV 51 (78)
T ss_dssp --CEEEEECTTSCEEEEETTCBHHHHHHHHCHHHHHTEEEEEET-TEEE
T ss_pred cCceEEEECCCCCEEEecCCCCHHHHHHHhhhhhhcceEEEEEC-CEEc
Confidence 556789999999998643 3333221125577887774 4443
No 58
>1hbx_G ETS-domain protein ELK-4; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: a.4.5.21
Probab=29.35 E-value=45 Score=25.27 Aligned_cols=26 Identities=19% Similarity=0.295 Sum_probs=20.8
Q ss_pred EEEEEeCCceEEEcCHHHHHHHHHHhh
Q 025892 217 VGVVRSDDRVFRVLSSEEIDEHLTAIS 243 (246)
Q Consensus 217 i~iv~~~~~~~~~l~~~ei~~~~~~i~ 243 (246)
|.+.++++ .|+.++|++|.+.|..--
T Consensus 25 I~Wt~~~g-eFklvdpe~VArLWG~rK 50 (157)
T 1hbx_G 25 ICWTSNDG-QFKLLQAEEVARLWGIRK 50 (157)
T ss_dssp EEECSSSS-CEEETTHHHHHHHHHHGG
T ss_pred eEEeCCCC-EEEecCcHHHHHHHHhcc
Confidence 55677765 599999999999998543
No 59
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=26.02 E-value=49 Score=25.41 Aligned_cols=31 Identities=10% Similarity=-0.036 Sum_probs=26.9
Q ss_pred cceeCCCCcch-hhhhHHHHHhccCceEEEEEc
Q 025892 13 ITIFSPEGRLF-QVEYAFKAVKATAITSIGVRG 44 (246)
Q Consensus 13 ~t~fsp~Gri~-Q~eya~~av~~~G~tvigi~~ 44 (246)
+-+||+.|+-- -+|-|.++-+ .|.++|+|..
T Consensus 81 vii~S~Sg~n~~~ie~A~~ake-~G~~vIaITs 112 (170)
T 3jx9_A 81 VLIFTPDTERSDLLASLARYDA-WHTPYSIITL 112 (170)
T ss_dssp EEEEESCSCCHHHHHHHHHHHH-HTCCEEEEES
T ss_pred EEEEeCCCCCHHHHHHHHHHHH-CCCcEEEEeC
Confidence 45899999985 8889999988 5999999988
No 60
>1bc8_C SAP-1, protein (SAP-1 ETS domain); DNA-binding domain, winged helix-turn-helix, DNA-binding specificity, transcription/DNA complex; HET: DNA; 1.93A {Homo sapiens} SCOP: a.4.5.21 PDB: 1bc7_C* 1k6o_A 1dux_C*
Probab=24.84 E-value=29 Score=23.96 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=19.8
Q ss_pred EEEEEeCCceEEEcCHHHHHHHHHHh
Q 025892 217 VGVVRSDDRVFRVLSSEEIDEHLTAI 242 (246)
Q Consensus 217 i~iv~~~~~~~~~l~~~ei~~~~~~i 242 (246)
|.+.++++ .|+.++|++|.+.++.-
T Consensus 24 I~W~~~~g-~Fkl~d~~~VArlWG~r 48 (93)
T 1bc8_C 24 ICWTSNDG-QFKLLQAEEVARLWGIR 48 (93)
T ss_dssp SEECSSSS-EEECTTHHHHHHHHHHH
T ss_pred eEEeCCCC-EEEecCHHHHHHHHHhc
Confidence 45666665 69999999999998853
No 61
>1pue_E Protein (transcription factor PU.1 (TF PU.1)); complex (transcription regulating/DNA), oncogene, transforming protein, DNA- binding, activator; HET: DNA; 2.10A {Mus musculus} SCOP: a.4.5.21
Probab=23.10 E-value=1.3e+02 Score=20.41 Aligned_cols=26 Identities=15% Similarity=0.167 Sum_probs=20.9
Q ss_pred EEEEEeCCceEEEc--CHHHHHHHHHHh
Q 025892 217 VGVVRSDDRVFRVL--SSEEIDEHLTAI 242 (246)
Q Consensus 217 i~iv~~~~~~~~~l--~~~ei~~~~~~i 242 (246)
|.+.+++.+.|+.+ +|++|.+.++.-
T Consensus 21 I~W~~~~~g~Fk~~~~~~e~VArlWG~r 48 (89)
T 1pue_E 21 IWWVDKDKGTFQFSSKHKEALAHRWGIQ 48 (89)
T ss_dssp EEEEETTTTEEEECTTTHHHHHHHHHHH
T ss_pred eEeecCCCcEEEEecCChHHHHHHhhcc
Confidence 68888775569986 799999998853
No 62
>1fli_A FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP: a.4.5.21
Probab=22.41 E-value=35 Score=23.85 Aligned_cols=25 Identities=8% Similarity=0.205 Sum_probs=19.1
Q ss_pred EEEEEeCCceEEEcCHHHHHHHHHHh
Q 025892 217 VGVVRSDDRVFRVLSSEEIDEHLTAI 242 (246)
Q Consensus 217 i~iv~~~~~~~~~l~~~ei~~~~~~i 242 (246)
|.+.++++ .|+.++|++|.+.+..-
T Consensus 25 I~W~~~~g-~Fklvd~e~VArlWG~r 49 (98)
T 1fli_A 25 ITWEGTNG-EFKMTDPDEVARRWGER 49 (98)
T ss_dssp EECTTSSS-SCEECCHHHHHHHHHHH
T ss_pred eEEeCCCC-EEEEcCHHHHHHHHHhc
Confidence 44555544 59999999999999853
No 63
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=21.33 E-value=2.2e+02 Score=19.96 Aligned_cols=69 Identities=12% Similarity=0.239 Sum_probs=48.9
Q ss_pred EEEEEcCCceeeeeeEEEecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEeCCceEEE
Q 025892 150 QLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFSYEETVQTAVSALQSVLQEDFKATEIEVGVVRSDDRVFRV 229 (246)
Q Consensus 150 ~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~s~~ea~~l~~~al~~~~~~d~~~~~iei~iv~~~~~~~~~ 229 (246)
+-|..++.|+..+. +++.. .+...| +.+|.+.++++.|. ...|-+..-+.+|..++.
T Consensus 9 rcy~~~~~~~~ird--I~vee-----------dl~~~P--~ykdLl~lmr~~F~--------~~DIaLNYrD~eGDLIri 65 (107)
T 1oey_J 9 RVYYYEDTISTIKD--IAVEE-----------DLSSTP--LLKDLLELTRREFQ--------REDIALNYRDAEGDLVRL 65 (107)
T ss_dssp EEEEEETTEEEEEE--EEECS-----------CTTCCC--CHHHHHHHHHHHHC--------CSSEEEEEECTTSCEEEC
T ss_pred eeEEecccCceeee--EEEcc-----------ccccCC--CHHHHHHHHHHHhc--------ccceeeeeecCCCCEEEE
Confidence 45677788876642 34432 222244 67899999888877 235888888999989999
Q ss_pred cCHHHHHHHHHH
Q 025892 230 LSSEEIDEHLTA 241 (246)
Q Consensus 230 l~~~ei~~~~~~ 241 (246)
++.++|.=.+++
T Consensus 66 lddeDv~lmi~~ 77 (107)
T 1oey_J 66 LSDEDVALMVRQ 77 (107)
T ss_dssp CSHHHHHHHHHH
T ss_pred cchHHHHHHHHH
Confidence 999999876654
No 64
>3fpw_A HBPS, extracellular HAEM-binding protein; heme binding protein; 1.60A {Streptomyces reticuli} PDB: 3fpv_A
Probab=20.52 E-value=1.5e+02 Score=23.21 Aligned_cols=37 Identities=16% Similarity=0.299 Sum_probs=30.9
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEeCCc
Q 025892 186 DPAFSYEETVQTAVSALQSVLQEDFKATEIEVGVVRSDDR 225 (246)
Q Consensus 186 ~~~~s~~ea~~l~~~al~~~~~~d~~~~~iei~iv~~~~~ 225 (246)
.+.+++++|.+++..++..+.++.. .+-|.|++..+-
T Consensus 62 ~~~ltl~~A~~l~~aA~~~A~~~g~---pV~IaVvD~~G~ 98 (192)
T 3fpw_A 62 STHLTLEAATKAARAAVEAAEKDGR---HVSVAVVDRNGN 98 (192)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHTTC---CCEEEEEETTSC
T ss_pred cCCCCHHHHHHHHHHHHHHHHhcCC---CEEEEEEeCCCC
Confidence 5779999999999999999887654 588888887763
No 65
>1awc_A Protein (GA binding protein alpha); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: a.4.5.21
Probab=20.11 E-value=41 Score=23.99 Aligned_cols=25 Identities=12% Similarity=0.206 Sum_probs=20.0
Q ss_pred EEEEEeCCceEEEcCHHHHHHHHHHh
Q 025892 217 VGVVRSDDRVFRVLSSEEIDEHLTAI 242 (246)
Q Consensus 217 i~iv~~~~~~~~~l~~~ei~~~~~~i 242 (246)
|.+.++++ .|+.++|++|.+.++.-
T Consensus 20 I~W~~~~g-eFkl~d~e~VArlWG~r 44 (110)
T 1awc_A 20 ISWVGDEG-EFKLNQPELVAQKWGQR 44 (110)
T ss_dssp SEECSSSS-EEECSSHHHHHHHHHHH
T ss_pred eEEeCCCC-EEEecCHHHHHHHHHHc
Confidence 46667654 69999999999998853
Done!