Query 025895
Match_columns 246
No_of_seqs 126 out of 1635
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 10:47:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025895.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025895hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1064 AdhP Zn-dependent alco 100.0 4.1E-52 8.8E-57 358.4 21.8 214 7-244 1-215 (339)
2 COG1062 AdhC Zn-dependent alco 100.0 5.5E-49 1.2E-53 333.5 21.3 235 8-244 1-235 (366)
3 KOG0022 Alcohol dehydrogenase, 100.0 4.4E-48 9.6E-53 323.5 21.6 241 4-244 2-242 (375)
4 KOG0023 Alcohol dehydrogenase, 100.0 7.8E-45 1.7E-49 305.2 20.0 224 1-241 1-228 (360)
5 KOG0024 Sorbitol dehydrogenase 100.0 1.4E-43 3.1E-48 298.2 18.2 212 7-242 2-217 (354)
6 TIGR02818 adh_III_F_hyde S-(hy 100.0 2.6E-40 5.6E-45 294.4 24.9 232 10-242 2-233 (368)
7 cd08301 alcohol_DH_plants Plan 100.0 4.5E-40 9.8E-45 292.7 25.0 235 8-242 1-235 (369)
8 PLN02740 Alcohol dehydrogenase 100.0 6.6E-40 1.4E-44 293.0 24.9 238 5-242 6-246 (381)
9 cd08300 alcohol_DH_class_III c 100.0 1.6E-39 3.4E-44 289.3 25.2 234 8-242 1-234 (368)
10 cd08281 liver_ADH_like1 Zinc-d 100.0 8.1E-39 1.7E-43 285.0 23.8 232 10-243 1-240 (371)
11 PLN02827 Alcohol dehydrogenase 100.0 9E-38 1.9E-42 279.0 25.2 232 6-241 9-240 (378)
12 cd08277 liver_alcohol_DH_like 100.0 9.6E-38 2.1E-42 277.5 24.9 231 8-241 1-231 (365)
13 TIGR03451 mycoS_dep_FDH mycoth 100.0 8.9E-38 1.9E-42 277.0 23.5 224 9-242 1-224 (358)
14 cd08239 THR_DH_like L-threonin 100.0 1.3E-37 2.9E-42 273.5 22.4 210 10-242 1-211 (339)
15 TIGR02819 fdhA_non_GSH formald 100.0 4.9E-37 1.1E-41 275.4 22.8 215 9-241 2-232 (393)
16 PRK09880 L-idonate 5-dehydroge 100.0 4E-37 8.6E-42 271.3 21.5 213 7-242 2-217 (343)
17 PLN02586 probable cinnamyl alc 100.0 7.4E-37 1.6E-41 271.5 22.7 216 7-242 10-231 (360)
18 TIGR02822 adh_fam_2 zinc-bindi 100.0 1.2E-36 2.6E-41 267.1 22.7 208 12-243 1-213 (329)
19 cd08299 alcohol_DH_class_I_II_ 100.0 4E-36 8.7E-41 267.9 25.3 234 6-241 4-237 (373)
20 COG1063 Tdh Threonine dehydrog 100.0 1.4E-36 3E-41 268.5 21.3 212 10-241 1-216 (350)
21 COG0604 Qor NADPH:quinone redu 100.0 6.4E-36 1.4E-40 261.5 20.1 186 10-242 1-190 (326)
22 cd08230 glucose_DH Glucose deh 100.0 1.3E-35 2.7E-40 262.9 21.4 210 10-242 1-222 (355)
23 PLN02178 cinnamyl-alcohol dehy 100.0 5.2E-35 1.1E-39 260.9 22.8 211 12-242 9-226 (375)
24 PLN02514 cinnamyl-alcohol dehy 100.0 7.7E-35 1.7E-39 258.2 23.6 225 1-241 1-227 (357)
25 TIGR03201 dearomat_had 6-hydro 100.0 9.5E-35 2.1E-39 256.8 21.3 205 13-242 2-213 (349)
26 cd05279 Zn_ADH1 Liver alcohol 100.0 6.8E-34 1.5E-38 252.8 24.8 231 10-242 1-231 (365)
27 cd08237 ribitol-5-phosphate_DH 100.0 5.2E-34 1.1E-38 251.4 20.3 203 9-241 2-211 (341)
28 PRK10309 galactitol-1-phosphat 100.0 9.2E-34 2E-38 250.1 21.7 207 10-242 1-208 (347)
29 cd08231 MDR_TM0436_like Hypoth 100.0 3E-33 6.5E-38 247.9 23.1 217 11-242 2-225 (361)
30 cd08278 benzyl_alcohol_DH Benz 100.0 4.4E-33 9.6E-38 247.6 23.4 232 8-242 1-234 (365)
31 PRK10083 putative oxidoreducta 100.0 6.2E-33 1.4E-37 243.6 22.1 208 10-242 1-209 (339)
32 cd08233 butanediol_DH_like (2R 100.0 8.9E-33 1.9E-37 244.0 22.3 209 10-242 1-220 (351)
33 cd08296 CAD_like Cinnamyl alco 100.0 1.4E-32 3E-37 241.3 23.0 209 10-242 1-210 (333)
34 cd08285 NADP_ADH NADP(H)-depen 100.0 1.6E-32 3.5E-37 242.4 23.3 211 10-241 1-213 (351)
35 cd05278 FDH_like Formaldehyde 100.0 1.4E-31 3E-36 235.5 23.1 211 10-241 1-214 (347)
36 cd08283 FDH_like_1 Glutathione 100.0 1.7E-31 3.8E-36 239.1 23.1 224 10-239 1-229 (386)
37 cd05284 arabinose_DH_like D-ar 100.0 1.5E-31 3.3E-36 234.7 21.9 209 10-241 1-214 (340)
38 cd08279 Zn_ADH_class_III Class 100.0 3.5E-31 7.5E-36 235.2 24.0 229 10-241 1-229 (363)
39 cd08256 Zn_ADH2 Alcohol dehydr 100.0 2.3E-31 5E-36 235.0 22.6 210 10-242 1-222 (350)
40 cd08260 Zn_ADH6 Alcohol dehydr 100.0 5.3E-31 1.2E-35 232.0 23.3 209 10-241 1-211 (345)
41 cd08246 crotonyl_coA_red croto 100.0 2.5E-31 5.4E-36 238.4 21.4 214 6-241 9-240 (393)
42 cd08286 FDH_like_ADH2 formalde 100.0 8.2E-31 1.8E-35 230.8 23.2 210 10-241 1-213 (345)
43 PRK13771 putative alcohol dehy 100.0 5.2E-31 1.1E-35 230.8 21.5 207 10-241 1-208 (334)
44 cd08240 6_hydroxyhexanoate_dh_ 100.0 8.1E-31 1.8E-35 231.4 22.0 210 10-241 1-222 (350)
45 cd08284 FDH_like_2 Glutathione 100.0 1.1E-30 2.5E-35 229.5 22.9 211 10-241 1-214 (344)
46 cd08282 PFDH_like Pseudomonas 100.0 1.4E-30 3.1E-35 232.2 23.7 217 10-241 1-223 (375)
47 KOG1197 Predicted quinone oxid 100.0 2.3E-31 4.9E-36 217.4 16.6 191 5-245 4-199 (336)
48 cd08259 Zn_ADH5 Alcohol dehydr 100.0 1.7E-30 3.8E-35 226.6 23.1 208 10-241 1-209 (332)
49 PRK09422 ethanol-active dehydr 100.0 1.8E-30 3.8E-35 227.8 22.3 207 10-241 1-209 (338)
50 TIGR01751 crot-CoA-red crotony 100.0 2.6E-30 5.7E-35 232.3 21.9 214 6-241 4-236 (398)
51 PLN02702 L-idonate 5-dehydroge 100.0 4.8E-30 1E-34 227.9 22.9 210 9-242 17-229 (364)
52 cd08263 Zn_ADH10 Alcohol dehyd 100.0 4.4E-30 9.6E-35 228.3 22.6 230 10-241 1-234 (367)
53 cd08238 sorbose_phosphate_red 100.0 1.7E-30 3.7E-35 234.4 20.1 197 8-238 1-222 (410)
54 cd08298 CAD2 Cinnamyl alcohol 100.0 7.6E-30 1.6E-34 223.0 23.0 209 10-242 1-214 (329)
55 KOG0025 Zn2+-binding dehydroge 100.0 2.3E-30 5.1E-35 214.8 17.4 192 5-245 15-215 (354)
56 cd05283 CAD1 Cinnamyl alcohol 100.0 6.8E-30 1.5E-34 224.6 21.5 215 11-242 1-216 (337)
57 cd08242 MDR_like Medium chain 100.0 1.1E-29 2.3E-34 221.3 21.9 202 10-242 1-202 (319)
58 TIGR01202 bchC 2-desacetyl-2-h 100.0 5.9E-30 1.3E-34 222.7 19.1 184 9-238 1-188 (308)
59 cd08264 Zn_ADH_like2 Alcohol d 100.0 1.8E-29 3.9E-34 220.3 21.5 203 10-241 1-205 (325)
60 cd08254 hydroxyacyl_CoA_DH 6-h 100.0 2.2E-29 4.9E-34 220.2 22.1 209 10-241 1-211 (338)
61 cd08261 Zn_ADH7 Alcohol dehydr 100.0 2.6E-29 5.7E-34 220.5 22.2 205 10-241 1-205 (337)
62 cd08245 CAD Cinnamyl alcohol d 100.0 3.5E-29 7.5E-34 218.9 21.8 207 11-241 1-208 (330)
63 PRK05396 tdh L-threonine 3-deh 100.0 3E-29 6.6E-34 220.6 21.5 208 10-242 1-211 (341)
64 cd08262 Zn_ADH8 Alcohol dehydr 100.0 3.8E-29 8.2E-34 219.8 21.4 196 10-241 1-208 (341)
65 cd08287 FDH_like_ADH3 formalde 100.0 6E-29 1.3E-33 218.8 22.3 208 10-242 1-216 (345)
66 cd08265 Zn_ADH3 Alcohol dehydr 100.0 5.9E-29 1.3E-33 222.6 22.2 208 9-241 28-250 (384)
67 cd08235 iditol_2_DH_like L-idi 100.0 1.3E-28 2.8E-33 216.4 22.4 207 10-241 1-212 (343)
68 cd08266 Zn_ADH_like1 Alcohol d 100.0 1.2E-28 2.6E-33 215.1 21.9 209 10-241 1-213 (342)
69 cd08291 ETR_like_1 2-enoyl thi 100.0 6E-29 1.3E-33 217.3 19.3 182 10-242 1-191 (324)
70 cd08236 sugar_DH NAD(P)-depend 100.0 2.3E-28 4.9E-33 215.0 21.9 206 10-241 1-206 (343)
71 cd08297 CAD3 Cinnamyl alcohol 100.0 3.6E-28 7.8E-33 213.6 22.7 209 10-242 1-213 (341)
72 cd05285 sorbitol_DH Sorbitol d 100.0 2.5E-28 5.5E-33 215.0 21.5 207 12-242 1-210 (343)
73 cd08232 idonate-5-DH L-idonate 100.0 3.3E-28 7.1E-33 213.6 21.3 208 14-241 2-212 (339)
74 cd08234 threonine_DH_like L-th 100.0 4E-28 8.7E-33 212.4 21.4 206 10-241 1-206 (334)
75 cd08258 Zn_ADH4 Alcohol dehydr 100.0 8.5E-28 1.8E-32 208.8 22.3 208 10-241 1-212 (306)
76 cd08292 ETR_like_2 2-enoyl thi 100.0 6.1E-28 1.3E-32 210.2 20.3 181 10-241 1-186 (324)
77 TIGR03366 HpnZ_proposed putati 100.0 1.9E-28 4.1E-33 210.4 16.1 161 66-242 1-168 (280)
78 cd05281 TDH Threonine dehydrog 100.0 1.2E-27 2.5E-32 210.6 21.5 207 10-241 1-210 (341)
79 TIGR02817 adh_fam_1 zinc-bindi 100.0 6.1E-28 1.3E-32 211.4 18.5 185 11-242 1-197 (336)
80 cd08274 MDR9 Medium chain dehy 100.0 2.3E-27 4.9E-32 208.9 20.5 199 10-241 1-223 (350)
81 cd08293 PTGR2 Prostaglandin re 100.0 3E-27 6.5E-32 208.0 20.3 170 22-242 23-204 (345)
82 cd08290 ETR 2-enoyl thioester 100.0 2.1E-27 4.6E-32 208.5 18.8 184 10-242 1-198 (341)
83 PRK10754 quinone oxidoreductas 100.0 5.2E-27 1.1E-31 204.9 19.7 184 9-241 1-187 (327)
84 cd08295 double_bond_reductase_ 100.0 9.2E-27 2E-31 204.7 19.6 181 9-242 7-200 (338)
85 cd08294 leukotriene_B4_DH_like 99.9 1.9E-26 4.1E-31 201.3 20.3 174 9-241 2-190 (329)
86 TIGR00692 tdh L-threonine 3-de 99.9 2E-26 4.2E-31 202.8 20.5 201 16-241 5-208 (340)
87 PLN03154 putative allyl alcoho 99.9 2.7E-26 5.9E-31 202.9 21.5 184 5-241 4-206 (348)
88 TIGR02825 B4_12hDH leukotriene 99.9 2.6E-26 5.7E-31 200.8 20.2 161 22-241 19-185 (325)
89 cd05280 MDR_yhdh_yhfp Yhdh and 99.9 4.3E-26 9.3E-31 198.4 20.7 187 10-242 1-194 (325)
90 cd08276 MDR7 Medium chain dehy 99.9 1.5E-25 3.2E-30 195.6 21.9 204 10-242 1-207 (336)
91 cd08248 RTN4I1 Human Reticulon 99.9 5.5E-26 1.2E-30 200.1 18.9 184 10-241 1-208 (350)
92 PTZ00354 alcohol dehydrogenase 99.9 1E-25 2.2E-30 196.7 20.4 183 9-241 1-187 (334)
93 cd08250 Mgc45594_like Mgc45594 99.9 1.4E-25 2.9E-30 196.0 20.6 180 9-241 1-186 (329)
94 cd05188 MDR Medium chain reduc 99.9 1.6E-25 3.6E-30 189.2 18.8 179 36-241 1-180 (271)
95 cd08289 MDR_yhfp_like Yhfp put 99.9 2.2E-25 4.7E-30 194.4 20.0 187 10-242 1-194 (326)
96 cd08243 quinone_oxidoreductase 99.9 2.9E-25 6.2E-30 192.4 20.4 187 10-242 1-190 (320)
97 cd08270 MDR4 Medium chain dehy 99.9 3E-25 6.5E-30 191.6 20.3 177 10-241 1-179 (305)
98 cd08252 AL_MDR Arginate lyase 99.9 2.6E-25 5.6E-30 194.7 20.0 185 10-241 1-197 (336)
99 cd08249 enoyl_reductase_like e 99.9 7.3E-26 1.6E-30 199.2 16.6 188 10-241 1-200 (339)
100 cd08244 MDR_enoyl_red Possible 99.9 4.4E-25 9.6E-30 192.0 20.8 183 10-241 1-189 (324)
101 TIGR02823 oxido_YhdH putative 99.9 6E-25 1.3E-29 191.5 21.1 185 11-241 1-192 (323)
102 cd08288 MDR_yhdh Yhdh putative 99.9 8.8E-25 1.9E-29 190.4 20.8 186 10-241 1-193 (324)
103 cd08273 MDR8 Medium chain dehy 99.9 2.4E-24 5.2E-29 188.1 20.5 181 10-241 1-185 (331)
104 cd08271 MDR5 Medium chain dehy 99.9 5.8E-24 1.3E-28 184.5 20.7 184 10-241 1-187 (325)
105 cd08247 AST1_like AST1 is a cy 99.9 4.8E-24 1E-28 188.3 20.2 187 10-241 1-199 (352)
106 cd05276 p53_inducible_oxidored 99.9 4.7E-24 1E-28 184.0 19.7 182 10-241 1-186 (323)
107 cd08253 zeta_crystallin Zeta-c 99.9 5.6E-24 1.2E-28 184.0 19.9 187 10-241 1-191 (325)
108 cd08272 MDR6 Medium chain dehy 99.9 7.6E-24 1.6E-28 183.6 19.7 186 10-241 1-190 (326)
109 KOG1198 Zinc-binding oxidoredu 99.9 4.4E-24 9.6E-29 187.6 17.1 174 22-245 20-210 (347)
110 cd08269 Zn_ADH9 Alcohol dehydr 99.9 1.5E-23 3.2E-28 181.5 18.8 172 16-241 2-176 (312)
111 cd05282 ETR_like 2-enoyl thioe 99.9 1.3E-23 2.7E-28 182.8 18.4 170 22-241 14-185 (323)
112 cd05286 QOR2 Quinone oxidoredu 99.9 4.5E-23 9.7E-28 177.7 20.5 181 11-242 1-184 (320)
113 cd05289 MDR_like_2 alcohol deh 99.9 5.9E-23 1.3E-27 176.5 18.4 184 10-241 1-190 (309)
114 cd08268 MDR2 Medium chain dehy 99.9 1.3E-22 2.8E-27 175.8 20.5 187 10-241 1-191 (328)
115 TIGR02824 quinone_pig3 putativ 99.9 2.7E-22 5.9E-27 173.6 20.1 182 10-241 1-186 (325)
116 cd05288 PGDH Prostaglandin deh 99.9 3.5E-22 7.6E-27 174.4 20.0 177 10-241 2-193 (329)
117 cd08267 MDR1 Medium chain dehy 99.9 2.8E-22 6.1E-27 173.6 18.5 171 23-241 15-189 (319)
118 PF08240 ADH_N: Alcohol dehydr 99.9 3.1E-23 6.8E-28 153.6 10.1 108 34-163 1-109 (109)
119 cd08251 polyketide_synthase po 99.9 6.2E-22 1.3E-26 169.9 18.1 164 29-241 2-167 (303)
120 cd08241 QOR1 Quinone oxidoredu 99.9 1.4E-21 3E-26 168.9 19.7 181 10-241 1-186 (323)
121 COG2130 Putative NADP-dependen 99.9 5.3E-22 1.1E-26 166.5 16.4 170 22-245 27-204 (340)
122 cd08275 MDR3 Medium chain dehy 99.9 7.7E-21 1.7E-25 165.7 20.1 180 11-241 1-185 (337)
123 cd05195 enoyl_red enoyl reduct 99.9 8.1E-21 1.7E-25 161.3 16.7 152 35-239 1-153 (293)
124 smart00829 PKS_ER Enoylreducta 99.8 4.4E-20 9.6E-25 156.7 16.0 148 39-240 2-150 (288)
125 cd08255 2-desacetyl-2-hydroxye 99.8 8.9E-18 1.9E-22 143.3 13.9 124 62-239 19-142 (277)
126 KOG1196 Predicted NAD-dependen 99.7 1.2E-15 2.6E-20 128.1 17.9 183 8-245 2-207 (343)
127 KOG1202 Animal-type fatty acid 99.6 4.8E-15 1E-19 141.6 11.1 161 22-242 1429-1600(2376)
128 PRK09424 pntA NAD(P) transhydr 98.1 9.8E-06 2.1E-10 74.9 7.3 50 192-242 162-211 (509)
129 TIGR01035 hemA glutamyl-tRNA r 97.6 2E-06 4.4E-11 78.0 -5.4 134 65-240 88-226 (417)
130 cd00401 AdoHcyase S-adenosyl-L 97.6 0.00024 5.2E-09 64.2 7.7 57 184-241 190-247 (413)
131 TIGR00561 pntA NAD(P) transhyd 97.3 0.00062 1.3E-08 63.0 6.8 49 193-242 162-210 (511)
132 cd05213 NAD_bind_Glutamyl_tRNA 97.1 0.0004 8.7E-09 60.7 3.8 83 158-241 139-225 (311)
133 PRK00517 prmA ribosomal protei 97.0 0.0038 8.2E-08 52.8 8.1 82 148-237 78-160 (250)
134 PF01488 Shikimate_DH: Shikima 96.9 0.0034 7.4E-08 47.9 6.9 44 194-237 11-54 (135)
135 PRK05476 S-adenosyl-L-homocyst 96.9 0.0039 8.4E-08 56.7 7.4 58 183-241 199-257 (425)
136 PRK12771 putative glutamate sy 96.8 0.0023 5E-08 60.4 6.2 52 191-243 133-205 (564)
137 TIGR00936 ahcY adenosylhomocys 96.7 0.0062 1.3E-07 55.0 7.5 49 192-241 192-240 (406)
138 PRK08306 dipicolinate synthase 96.7 0.0089 1.9E-07 51.9 8.1 47 194-241 151-197 (296)
139 PRK00045 hemA glutamyl-tRNA re 96.4 0.0046 1E-07 56.4 5.1 136 65-241 90-229 (423)
140 PF01262 AlaDh_PNT_C: Alanine 96.4 0.012 2.6E-07 46.6 6.7 45 196-241 21-65 (168)
141 PLN02494 adenosylhomocysteinas 96.3 0.013 2.9E-07 53.6 7.4 57 184-241 242-299 (477)
142 PRK03369 murD UDP-N-acetylmura 96.1 0.017 3.7E-07 53.7 6.8 50 191-241 8-57 (488)
143 TIGR00518 alaDH alanine dehydr 96.0 0.02 4.4E-07 51.3 6.6 46 194-240 166-212 (370)
144 PF13823 ADH_N_assoc: Alcohol 95.9 0.0082 1.8E-07 31.1 2.3 22 10-32 1-22 (23)
145 PRK11873 arsM arsenite S-adeno 95.7 0.032 6.9E-07 47.6 6.6 49 189-238 72-121 (272)
146 TIGR02853 spore_dpaA dipicolin 95.6 0.039 8.4E-07 47.7 6.7 46 194-240 150-195 (287)
147 PRK12549 shikimate 5-dehydroge 95.5 0.06 1.3E-06 46.4 7.6 43 194-236 126-168 (284)
148 PRK12550 shikimate 5-dehydroge 95.5 0.066 1.4E-06 45.9 7.7 46 191-236 118-163 (272)
149 COG0169 AroE Shikimate 5-dehyd 95.5 0.046 9.9E-07 47.1 6.6 44 194-237 125-168 (283)
150 PRK08324 short chain dehydroge 95.5 0.035 7.6E-07 53.7 6.5 77 148-236 386-463 (681)
151 PTZ00075 Adenosylhomocysteinas 95.4 0.078 1.7E-06 48.8 8.1 49 192-241 251-299 (476)
152 TIGR01809 Shik-DH-AROM shikima 95.3 0.051 1.1E-06 46.8 6.5 43 194-236 124-166 (282)
153 PF02826 2-Hacid_dh_C: D-isome 95.3 0.053 1.1E-06 43.3 6.0 46 193-239 34-79 (178)
154 cd01075 NAD_bind_Leu_Phe_Val_D 95.2 0.072 1.6E-06 43.5 6.7 47 193-240 26-73 (200)
155 PRK00258 aroE shikimate 5-dehy 95.1 0.068 1.5E-06 45.9 6.7 44 193-236 121-164 (278)
156 PRK14027 quinate/shikimate deh 95.1 0.1 2.2E-06 45.0 7.6 43 194-236 126-168 (283)
157 PRK06949 short chain dehydroge 95.0 0.078 1.7E-06 44.2 6.6 42 193-235 7-49 (258)
158 PRK04148 hypothetical protein; 95.0 0.081 1.7E-06 40.3 5.9 48 192-241 14-61 (134)
159 PRK05872 short chain dehydroge 94.9 0.087 1.9E-06 45.4 6.6 45 194-239 8-54 (296)
160 PRK07814 short chain dehydroge 94.8 0.096 2.1E-06 44.1 6.6 41 194-235 9-50 (263)
161 PRK12829 short chain dehydroge 94.7 0.1 2.2E-06 43.6 6.5 45 192-237 8-53 (264)
162 PRK05867 short chain dehydroge 94.5 0.12 2.6E-06 43.1 6.6 41 194-235 8-49 (253)
163 PLN03209 translocon at the inn 94.5 0.12 2.6E-06 48.8 7.0 47 188-235 73-120 (576)
164 PRK12548 shikimate 5-dehydroge 94.5 0.17 3.8E-06 43.7 7.5 36 194-229 125-160 (289)
165 PRK07523 gluconate 5-dehydroge 94.5 0.13 2.7E-06 43.0 6.6 40 194-234 9-49 (255)
166 PRK07060 short chain dehydroge 94.4 0.13 2.8E-06 42.5 6.5 42 194-236 8-50 (245)
167 PLN02780 ketoreductase/ oxidor 94.4 0.11 2.4E-06 45.5 6.3 41 194-235 52-93 (320)
168 PRK12749 quinate/shikimate deh 94.4 0.17 3.6E-06 43.8 7.3 37 194-230 123-159 (288)
169 PRK05866 short chain dehydroge 94.4 0.13 2.8E-06 44.4 6.6 40 195-235 40-80 (293)
170 PRK07576 short chain dehydroge 94.4 0.14 2.9E-06 43.3 6.6 39 194-233 8-47 (264)
171 PRK07831 short chain dehydroge 94.3 0.14 3E-06 43.0 6.5 43 192-235 14-58 (262)
172 TIGR01318 gltD_gamma_fam gluta 94.3 0.13 2.7E-06 47.6 6.6 49 193-242 139-208 (467)
173 PRK08213 gluconate 5-dehydroge 94.2 0.16 3.4E-06 42.6 6.6 41 194-235 11-52 (259)
174 PRK05854 short chain dehydroge 94.1 0.15 3.3E-06 44.3 6.6 41 194-235 13-54 (313)
175 PRK12769 putative oxidoreducta 94.1 0.12 2.6E-06 49.8 6.3 36 193-229 325-360 (654)
176 PRK06196 oxidoreductase; Provi 94.0 0.16 3.5E-06 44.1 6.5 41 194-235 25-66 (315)
177 cd01065 NAD_bind_Shikimate_DH 94.0 0.34 7.4E-06 37.2 7.7 47 193-239 17-64 (155)
178 PRK08945 putative oxoacyl-(acy 94.0 0.17 3.7E-06 42.0 6.4 42 191-233 8-50 (247)
179 PRK06841 short chain dehydroge 94.0 0.18 3.9E-06 42.0 6.5 43 194-237 14-57 (255)
180 PRK06124 gluconate 5-dehydroge 93.9 0.2 4.3E-06 41.8 6.6 40 194-234 10-50 (256)
181 PRK12809 putative oxidoreducta 93.8 0.14 3E-06 49.3 6.2 49 194-243 309-378 (639)
182 KOG2304 3-hydroxyacyl-CoA dehy 93.8 0.12 2.6E-06 42.9 4.8 46 191-237 7-52 (298)
183 PRK08085 gluconate 5-dehydroge 93.7 0.21 4.7E-06 41.6 6.6 40 194-234 8-48 (254)
184 TIGR00507 aroE shikimate 5-deh 93.7 0.29 6.4E-06 41.7 7.4 42 193-235 115-156 (270)
185 cd01080 NAD_bind_m-THF_DH_Cycl 93.5 0.36 7.8E-06 38.3 7.1 58 175-233 24-82 (168)
186 PRK09242 tropinone reductase; 93.4 0.26 5.6E-06 41.2 6.5 41 194-235 8-49 (257)
187 PRK05717 oxidoreductase; Valid 93.4 0.26 5.6E-06 41.2 6.5 40 194-234 9-49 (255)
188 PRK06197 short chain dehydroge 93.4 0.22 4.8E-06 43.0 6.2 39 194-233 15-54 (306)
189 TIGR00406 prmA ribosomal prote 93.3 0.54 1.2E-05 40.6 8.4 44 192-237 157-200 (288)
190 PF00670 AdoHcyase_NAD: S-aden 93.1 0.34 7.4E-06 38.1 6.3 49 192-241 20-68 (162)
191 cd01078 NAD_bind_H4MPT_DH NADP 93.1 0.35 7.7E-06 38.9 6.7 42 194-236 27-69 (194)
192 KOG1014 17 beta-hydroxysteroid 93.1 0.23 5.1E-06 42.9 5.7 43 193-237 47-91 (312)
193 PRK08277 D-mannonate oxidoredu 93.1 0.3 6.6E-06 41.3 6.5 40 194-234 9-49 (278)
194 PF02254 TrkA_N: TrkA-N domain 92.9 0.37 8.1E-06 35.1 6.1 43 198-241 1-43 (116)
195 PLN02253 xanthoxin dehydrogena 92.9 0.34 7.3E-06 41.1 6.5 39 194-233 17-56 (280)
196 PRK11705 cyclopropane fatty ac 92.8 0.28 6.2E-06 44.1 6.1 56 182-239 155-210 (383)
197 PRK06935 2-deoxy-D-gluconate 3 92.7 0.34 7.3E-06 40.6 6.2 34 194-228 14-48 (258)
198 PRK13940 glutamyl-tRNA reducta 92.6 0.51 1.1E-05 43.0 7.6 47 193-239 179-226 (414)
199 TIGR02964 xanthine_xdhC xanthi 92.4 0.29 6.2E-06 41.4 5.4 38 192-230 97-134 (246)
200 PRK07097 gluconate 5-dehydroge 92.4 0.43 9.3E-06 40.1 6.5 41 194-235 9-50 (265)
201 PF00070 Pyr_redox: Pyridine n 92.3 0.37 8E-06 32.8 5.0 33 197-230 1-33 (80)
202 cd05311 NAD_bind_2_malic_enz N 92.3 0.5 1.1E-05 39.3 6.6 36 193-228 23-60 (226)
203 PF13478 XdhC_C: XdhC Rossmann 92.2 0.14 3E-06 39.2 3.0 34 198-232 1-34 (136)
204 PRK01438 murD UDP-N-acetylmura 92.2 0.45 9.8E-06 44.0 6.9 47 194-241 15-66 (480)
205 PRK07533 enoyl-(acyl carrier p 92.2 0.4 8.6E-06 40.3 6.0 37 194-231 9-48 (258)
206 PRK06113 7-alpha-hydroxysteroi 92.1 0.5 1.1E-05 39.4 6.5 40 194-234 10-50 (255)
207 PLN02520 bifunctional 3-dehydr 92.0 0.43 9.4E-06 44.9 6.6 42 194-236 378-419 (529)
208 PF02353 CMAS: Mycolic acid cy 91.9 0.37 8E-06 41.3 5.5 49 186-236 54-102 (273)
209 PRK00377 cbiT cobalt-precorrin 91.8 0.56 1.2E-05 38.0 6.3 48 188-236 34-82 (198)
210 PRK06484 short chain dehydroge 91.7 0.52 1.1E-05 43.9 6.7 44 193-237 267-311 (520)
211 PRK06720 hypothetical protein; 91.6 0.71 1.5E-05 36.5 6.5 39 194-233 15-54 (169)
212 PRK07775 short chain dehydroge 91.6 0.61 1.3E-05 39.5 6.6 39 194-233 9-48 (274)
213 PLN00141 Tic62-NAD(P)-related 91.5 0.6 1.3E-05 39.0 6.4 39 195-234 17-56 (251)
214 PRK15181 Vi polysaccharide bio 91.3 0.43 9.2E-06 42.1 5.5 47 181-229 2-49 (348)
215 PF12847 Methyltransf_18: Meth 91.2 0.71 1.5E-05 33.1 5.7 42 194-237 1-43 (112)
216 PLN00203 glutamyl-tRNA reducta 91.0 0.55 1.2E-05 44.0 6.1 43 195-237 266-308 (519)
217 KOG1205 Predicted dehydrogenas 91.0 0.51 1.1E-05 40.6 5.4 41 194-235 11-52 (282)
218 PLN02686 cinnamoyl-CoA reducta 90.9 0.68 1.5E-05 41.3 6.4 43 193-236 51-94 (367)
219 PRK07424 bifunctional sterol d 90.9 0.67 1.5E-05 42.1 6.4 39 194-233 177-216 (406)
220 PRK10669 putative cation:proto 90.8 0.54 1.2E-05 44.5 5.9 45 196-241 418-462 (558)
221 PRK12367 short chain dehydroge 90.7 0.67 1.5E-05 38.9 5.9 34 195-229 14-48 (245)
222 PF03807 F420_oxidored: NADP o 90.6 1.1 2.4E-05 31.4 6.1 43 197-240 1-48 (96)
223 PRK06523 short chain dehydroge 90.5 0.56 1.2E-05 39.2 5.3 36 194-230 8-44 (260)
224 PRK03562 glutathione-regulated 90.4 0.63 1.4E-05 44.7 6.0 47 195-242 400-446 (621)
225 cd05211 NAD_bind_Glu_Leu_Phe_V 90.4 0.99 2.1E-05 37.3 6.5 36 194-229 22-57 (217)
226 PRK12814 putative NADPH-depend 90.4 0.66 1.4E-05 44.8 6.2 36 193-229 191-226 (652)
227 PLN02896 cinnamyl-alcohol dehy 90.3 0.88 1.9E-05 40.1 6.6 40 193-233 8-48 (353)
228 TIGR02469 CbiT precorrin-6Y C5 90.3 1.2 2.6E-05 32.3 6.4 48 188-236 13-60 (124)
229 PF13450 NAD_binding_8: NAD(P) 90.2 0.59 1.3E-05 31.0 4.1 30 200-230 1-30 (68)
230 PRK03659 glutathione-regulated 89.8 0.71 1.5E-05 44.1 5.9 45 196-241 401-445 (601)
231 PRK08159 enoyl-(acyl carrier p 89.6 1 2.2E-05 38.3 6.1 35 194-229 9-46 (272)
232 PRK07574 formate dehydrogenase 89.5 0.89 1.9E-05 41.0 5.9 39 194-233 191-229 (385)
233 PF07991 IlvN: Acetohydroxy ac 89.5 1.3 2.9E-05 34.9 6.1 48 194-241 3-50 (165)
234 PRK14982 acyl-ACP reductase; P 89.5 1.1 2.4E-05 39.7 6.3 44 193-236 153-198 (340)
235 PRK00141 murD UDP-N-acetylmura 89.4 1.2 2.5E-05 41.4 6.8 47 193-240 13-60 (473)
236 PRK13403 ketol-acid reductoiso 89.4 1 2.3E-05 39.5 6.0 47 193-240 14-60 (335)
237 KOG1208 Dehydrogenases with di 89.2 1.1 2.5E-05 39.2 6.2 42 194-236 34-76 (314)
238 PRK06171 sorbitol-6-phosphate 89.2 0.63 1.4E-05 39.0 4.6 37 194-231 8-45 (266)
239 PLN03139 formate dehydrogenase 89.2 0.9 2E-05 41.0 5.7 45 194-239 198-242 (386)
240 PF13241 NAD_binding_7: Putati 89.2 0.48 1E-05 34.2 3.3 35 194-229 6-40 (103)
241 PLN02778 3,5-epimerase/4-reduc 89.1 1.2 2.6E-05 38.5 6.3 51 195-246 9-64 (298)
242 PRK06719 precorrin-2 dehydroge 89.1 1 2.2E-05 35.2 5.4 32 194-226 12-43 (157)
243 COG0031 CysK Cysteine synthase 89.0 1.7 3.8E-05 37.6 7.1 56 187-243 54-112 (300)
244 TIGR02632 RhaD_aldol-ADH rhamn 88.9 1.1 2.4E-05 43.4 6.6 41 194-235 413-454 (676)
245 PRK09310 aroDE bifunctional 3- 88.8 1.8 3.8E-05 40.3 7.5 42 194-236 331-372 (477)
246 PRK07201 short chain dehydroge 88.7 1.2 2.6E-05 42.7 6.6 40 195-235 371-411 (657)
247 PLN02172 flavin-containing mon 88.7 0.71 1.5E-05 42.7 4.8 34 195-229 10-43 (461)
248 PRK13984 putative oxidoreducta 88.7 1.3 2.9E-05 42.2 6.8 37 192-229 280-316 (604)
249 PLN02928 oxidoreductase family 88.6 0.95 2.1E-05 40.2 5.4 35 194-229 158-192 (347)
250 PRK05855 short chain dehydroge 88.5 1.3 2.8E-05 41.4 6.6 41 194-235 314-355 (582)
251 PTZ00079 NADP-specific glutama 88.5 2 4.3E-05 39.5 7.4 35 193-228 235-270 (454)
252 TIGR01317 GOGAT_sm_gam glutama 88.4 1.3 2.9E-05 41.1 6.5 35 193-228 141-175 (485)
253 PLN02730 enoyl-[acyl-carrier-p 88.4 1 2.2E-05 39.2 5.4 37 194-232 8-47 (303)
254 KOG0029 Amine oxidase [Seconda 88.1 0.77 1.7E-05 42.9 4.7 36 193-229 13-48 (501)
255 PRK07985 oxidoreductase; Provi 88.1 1.4 3.1E-05 37.9 6.1 34 194-228 48-82 (294)
256 PRK13243 glyoxylate reductase; 88.0 1.5 3.2E-05 38.8 6.2 37 194-231 149-185 (333)
257 KOG1252 Cystathionine beta-syn 87.8 1.9 4.2E-05 37.9 6.5 56 187-243 95-154 (362)
258 PRK09496 trkA potassium transp 87.7 1.9 4.1E-05 39.4 7.0 45 194-239 230-274 (453)
259 PRK09134 short chain dehydroge 87.6 1.9 4.1E-05 36.0 6.4 38 194-232 8-47 (258)
260 PRK08993 2-deoxy-D-gluconate 3 87.4 1.9 4.1E-05 35.9 6.3 34 195-229 10-44 (253)
261 PRK06701 short chain dehydroge 87.3 1.7 3.8E-05 37.2 6.2 36 193-229 44-80 (290)
262 PRK12831 putative oxidoreducta 87.3 1.2 2.6E-05 41.1 5.5 36 192-228 137-172 (464)
263 PRK07364 2-octaprenyl-6-methox 87.2 0.83 1.8E-05 41.1 4.3 34 196-230 19-52 (415)
264 PRK01710 murD UDP-N-acetylmura 87.2 1.6 3.4E-05 40.2 6.2 34 195-229 14-47 (458)
265 TIGR02355 moeB molybdopterin s 87.2 1.3 2.8E-05 37.2 5.2 34 196-229 25-58 (240)
266 cd05191 NAD_bind_amino_acid_DH 87.2 2.2 4.7E-05 29.5 5.5 35 193-227 21-55 (86)
267 PLN02427 UDP-apiose/xylose syn 87.2 1.7 3.6E-05 38.9 6.2 41 194-235 13-55 (386)
268 TIGR02356 adenyl_thiF thiazole 87.2 1.4 3E-05 36.0 5.2 34 195-228 21-54 (202)
269 PF00899 ThiF: ThiF family; I 87.1 1.5 3.3E-05 33.0 5.1 35 195-229 2-36 (135)
270 PRK14967 putative methyltransf 87.0 2.7 5.9E-05 34.6 7.0 48 188-237 30-77 (223)
271 COG0334 GdhA Glutamate dehydro 87.0 2.4 5.3E-05 38.3 6.9 42 188-230 199-241 (411)
272 COG0686 Ald Alanine dehydrogen 87.0 0.95 2.1E-05 39.4 4.2 42 196-238 169-210 (371)
273 TIGR02354 thiF_fam2 thiamine b 86.9 1.2 2.5E-05 36.4 4.6 34 195-228 21-54 (200)
274 PRK08328 hypothetical protein; 86.9 1.4 3E-05 36.8 5.1 35 195-229 27-61 (231)
275 PRK08261 fabG 3-ketoacyl-(acyl 86.7 1.7 3.8E-05 39.7 6.2 34 194-228 209-243 (450)
276 PRK12810 gltD glutamate syntha 86.7 1.3 2.8E-05 40.9 5.4 35 193-228 141-175 (471)
277 PRK08410 2-hydroxyacid dehydro 86.6 1.5 3.2E-05 38.4 5.4 35 194-229 144-178 (311)
278 PRK07792 fabG 3-ketoacyl-(acyl 86.6 2.3 4.9E-05 36.8 6.5 34 194-228 11-45 (306)
279 PRK13943 protein-L-isoaspartat 86.5 2.3 4.9E-05 37.4 6.5 50 187-237 73-123 (322)
280 PLN02214 cinnamoyl-CoA reducta 86.5 1.6 3.5E-05 38.4 5.6 37 194-231 9-46 (342)
281 PRK06128 oxidoreductase; Provi 86.4 1.7 3.7E-05 37.3 5.7 34 194-228 54-88 (300)
282 COG0111 SerA Phosphoglycerate 86.3 1.5 3.3E-05 38.6 5.3 32 195-227 142-173 (324)
283 PRK12480 D-lactate dehydrogena 86.3 1.9 4.1E-05 38.1 5.9 37 194-231 145-181 (330)
284 COG2230 Cfa Cyclopropane fatty 86.1 3.7 8.1E-05 35.3 7.4 54 182-237 60-113 (283)
285 PF06325 PrmA: Ribosomal prote 86.1 1.3 2.8E-05 38.5 4.6 43 192-236 159-201 (295)
286 PLN03013 cysteine synthase 86.0 2.7 5.9E-05 38.4 6.9 56 188-243 167-225 (429)
287 COG1052 LdhA Lactate dehydroge 85.9 1.8 4E-05 38.0 5.6 36 194-230 145-180 (324)
288 PRK06436 glycerate dehydrogena 85.8 1.8 3.9E-05 37.7 5.5 35 194-229 121-155 (303)
289 COG0373 HemA Glutamyl-tRNA red 85.6 3.6 7.8E-05 37.4 7.4 49 193-241 176-225 (414)
290 COG1086 Predicted nucleoside-d 85.5 2.3 5.1E-05 40.0 6.2 44 192-235 247-291 (588)
291 PRK08261 fabG 3-ketoacyl-(acyl 85.5 0.66 1.4E-05 42.4 2.7 44 188-232 27-75 (450)
292 PLN02256 arogenate dehydrogena 85.5 3.2 6.8E-05 36.2 6.8 53 186-240 27-79 (304)
293 PLN02657 3,8-divinyl protochlo 85.4 1.7 3.6E-05 39.2 5.3 39 192-231 57-96 (390)
294 PRK06718 precorrin-2 dehydroge 85.4 2.2 4.7E-05 34.8 5.5 35 194-229 9-43 (202)
295 PRK06932 glycerate dehydrogena 85.3 1.7 3.6E-05 38.1 5.0 35 194-229 146-180 (314)
296 PRK05690 molybdopterin biosynt 85.2 2.1 4.6E-05 36.0 5.5 35 195-229 32-66 (245)
297 PLN00198 anthocyanidin reducta 85.2 2 4.4E-05 37.5 5.6 35 195-230 9-44 (338)
298 PRK06487 glycerate dehydrogena 85.0 1.9 4.1E-05 37.8 5.3 34 194-228 147-180 (317)
299 KOG1210 Predicted 3-ketosphing 85.0 2.6 5.6E-05 36.8 5.9 46 191-237 29-75 (331)
300 PRK06141 ornithine cyclodeamin 85.0 3.3 7.2E-05 36.2 6.8 44 193-236 123-167 (314)
301 PLN02556 cysteine synthase/L-3 84.9 3.5 7.5E-05 37.0 7.0 56 188-243 103-161 (368)
302 PRK15469 ghrA bifunctional gly 84.9 1.9 4.1E-05 37.7 5.2 37 194-231 135-171 (312)
303 KOG1201 Hydroxysteroid 17-beta 84.8 2.4 5.3E-05 36.6 5.6 38 193-231 36-74 (300)
304 TIGR01138 cysM cysteine syntha 84.8 4.3 9.4E-05 35.0 7.3 56 188-243 52-109 (290)
305 cd05313 NAD_bind_2_Glu_DH NAD( 84.6 2.3 5E-05 36.1 5.4 34 193-227 36-69 (254)
306 PRK14175 bifunctional 5,10-met 84.4 4.7 0.0001 34.8 7.3 56 175-232 138-195 (286)
307 PLN02927 antheraxanthin epoxid 84.4 1.6 3.5E-05 42.2 4.8 37 192-229 78-114 (668)
308 TIGR01470 cysG_Nterm siroheme 84.3 3.4 7.5E-05 33.8 6.2 25 195-219 9-33 (205)
309 PRK14031 glutamate dehydrogena 84.2 2.2 4.7E-05 39.2 5.4 34 193-227 226-259 (444)
310 PRK14192 bifunctional 5,10-met 84.2 3.4 7.3E-05 35.7 6.4 39 193-232 157-196 (283)
311 PRK07340 ornithine cyclodeamin 84.1 4 8.6E-05 35.5 6.8 43 193-235 123-166 (304)
312 COG3288 PntA NAD/NADP transhyd 84.0 0.86 1.9E-05 39.6 2.5 51 191-242 160-210 (356)
313 PRK08644 thiamine biosynthesis 84.0 2.4 5.1E-05 34.9 5.1 34 195-228 28-61 (212)
314 PRK08317 hypothetical protein; 84.0 3.6 7.8E-05 33.5 6.3 52 186-238 11-63 (241)
315 PF11017 DUF2855: Protein of u 83.9 12 0.00025 32.8 9.5 47 193-240 134-182 (314)
316 PRK04176 ribulose-1,5-biphosph 83.9 1.8 3.9E-05 36.7 4.6 33 196-229 26-58 (257)
317 cd01483 E1_enzyme_family Super 83.9 2.4 5.2E-05 32.2 4.9 32 197-228 1-32 (143)
318 TIGR00292 thiazole biosynthesi 83.9 1.8 3.9E-05 36.7 4.5 33 196-229 22-54 (254)
319 PRK08291 ectoine utilization p 83.9 4 8.7E-05 35.9 6.8 44 193-236 130-174 (330)
320 PRK08762 molybdopterin biosynt 83.8 2.6 5.7E-05 37.8 5.8 35 194-228 134-168 (376)
321 COG2518 Pcm Protein-L-isoaspar 83.8 4.9 0.00011 33.0 6.8 52 186-240 64-119 (209)
322 cd00757 ThiF_MoeB_HesA_family 83.7 2.6 5.5E-05 35.0 5.3 35 195-229 21-55 (228)
323 PRK12475 thiamine/molybdopteri 83.7 2.4 5.1E-05 37.6 5.3 35 195-229 24-58 (338)
324 PLN02695 GDP-D-mannose-3',5'-e 83.6 2.2 4.7E-05 38.1 5.2 35 193-228 19-54 (370)
325 PRK12770 putative glutamate sy 83.5 2.2 4.9E-05 37.6 5.1 37 192-229 15-51 (352)
326 PRK12779 putative bifunctional 83.4 1.8 3.8E-05 43.7 4.9 36 193-229 304-339 (944)
327 PRK08132 FAD-dependent oxidore 83.2 1.7 3.6E-05 41.0 4.5 33 196-229 24-56 (547)
328 PRK14030 glutamate dehydrogena 83.1 2.5 5.5E-05 38.8 5.4 32 193-225 226-257 (445)
329 PRK08223 hypothetical protein; 83.1 2.4 5.1E-05 36.7 4.9 35 195-229 27-61 (287)
330 TIGR01316 gltA glutamate synth 83.1 2.3 5.1E-05 39.0 5.2 35 193-228 131-165 (449)
331 PRK07688 thiamine/molybdopteri 83.1 2.5 5.5E-05 37.4 5.3 33 196-228 25-57 (339)
332 cd01562 Thr-dehyd Threonine de 82.9 4.4 9.6E-05 34.9 6.7 49 195-243 65-115 (304)
333 PRK11761 cysM cysteine synthas 82.9 5.6 0.00012 34.4 7.3 56 188-243 56-113 (296)
334 TIGR02992 ectoine_eutC ectoine 82.9 4.4 9.5E-05 35.6 6.7 43 193-235 127-170 (326)
335 PRK08618 ornithine cyclodeamin 82.8 5.5 0.00012 35.0 7.3 44 193-236 125-169 (325)
336 cd01076 NAD_bind_1_Glu_DH NAD( 82.8 5.1 0.00011 33.4 6.7 34 194-228 30-63 (227)
337 PRK11790 D-3-phosphoglycerate 82.7 2.7 6E-05 38.2 5.5 35 194-229 150-184 (409)
338 PRK09853 putative selenate red 82.6 2.2 4.7E-05 43.2 5.1 36 193-229 537-572 (1019)
339 PRK06183 mhpA 3-(3-hydroxyphen 82.3 1.9 4.2E-05 40.5 4.5 33 196-229 11-43 (538)
340 PRK15116 sulfur acceptor prote 82.2 3 6.5E-05 35.7 5.2 35 194-228 29-63 (268)
341 TIGR01139 cysK cysteine syntha 82.2 6.8 0.00015 33.8 7.6 56 188-243 50-107 (298)
342 PRK11749 dihydropyrimidine deh 82.2 2.6 5.6E-05 38.7 5.2 36 193-229 138-173 (457)
343 PLN02206 UDP-glucuronate decar 81.9 2.9 6.2E-05 38.4 5.3 34 194-228 118-152 (442)
344 PLN02735 carbamoyl-phosphate s 81.8 2.4 5.1E-05 43.6 5.1 52 178-230 6-68 (1102)
345 PRK10717 cysteine synthase A; 81.8 6.7 0.00015 34.4 7.5 56 188-243 57-114 (330)
346 PLN02572 UDP-sulfoquinovose sy 81.6 2.7 5.9E-05 38.5 5.1 34 193-227 45-79 (442)
347 PRK00364 groES co-chaperonin G 81.6 3.2 7E-05 29.6 4.4 25 71-95 36-69 (95)
348 PRK05600 thiamine biosynthesis 81.5 3 6.6E-05 37.4 5.2 34 195-228 41-74 (370)
349 COG1179 Dinucleotide-utilizing 81.5 2.3 5.1E-05 35.7 4.1 35 195-229 30-64 (263)
350 PRK00676 hemA glutamyl-tRNA re 81.4 3.5 7.6E-05 36.5 5.4 39 193-231 172-210 (338)
351 cd00755 YgdL_like Family of ac 81.3 3.4 7.3E-05 34.5 5.1 34 196-229 12-45 (231)
352 TIGR03315 Se_ygfK putative sel 81.2 2.7 5.8E-05 42.7 5.1 34 194-228 536-569 (1012)
353 PLN02565 cysteine synthase 81.2 6.5 0.00014 34.5 7.1 56 188-243 59-117 (322)
354 PLN02166 dTDP-glucose 4,6-dehy 81.1 3.4 7.3E-05 37.9 5.5 35 193-228 118-153 (436)
355 PRK05597 molybdopterin biosynt 81.1 3.3 7.2E-05 36.9 5.3 35 195-229 28-62 (355)
356 PRK00257 erythronate-4-phospha 81.1 3.4 7.4E-05 37.2 5.4 36 193-229 114-149 (381)
357 PF00289 CPSase_L_chain: Carba 81.0 1.9 4.1E-05 31.7 3.1 36 196-232 3-38 (110)
358 cd00320 cpn10 Chaperonin 10 Kd 80.9 3.9 8.4E-05 29.0 4.6 25 71-95 35-68 (93)
359 PRK06567 putative bifunctional 80.8 3.3 7.1E-05 41.8 5.6 35 193-228 381-415 (1028)
360 PRK15438 erythronate-4-phospha 80.6 3.8 8.2E-05 36.9 5.5 35 193-228 114-148 (378)
361 PRK12831 putative oxidoreducta 80.6 4.9 0.00011 37.1 6.4 36 192-228 278-313 (464)
362 PRK11207 tellurite resistance 80.6 4.5 9.7E-05 32.7 5.5 47 188-237 24-70 (197)
363 TIGR01136 cysKM cysteine synth 80.5 8.9 0.00019 33.1 7.7 56 188-243 51-108 (299)
364 PTZ00188 adrenodoxin reductase 80.5 3.9 8.4E-05 38.2 5.6 36 194-230 38-74 (506)
365 PRK11730 fadB multifunctional 80.4 4.1 8.9E-05 39.9 6.1 39 196-235 314-352 (715)
366 TIGR01316 gltA glutamate synth 80.3 5.3 0.00011 36.7 6.5 36 192-228 269-304 (449)
367 PLN00093 geranylgeranyl diphos 80.3 2.7 5.9E-05 38.7 4.6 34 196-230 40-73 (450)
368 PRK08125 bifunctional UDP-gluc 80.1 3.5 7.5E-05 39.9 5.5 39 192-231 312-352 (660)
369 PRK08638 threonine dehydratase 80.0 6.6 0.00014 34.6 6.8 48 196-243 76-125 (333)
370 PRK08198 threonine dehydratase 79.8 6.9 0.00015 35.4 7.0 50 194-243 69-120 (404)
371 PLN02306 hydroxypyruvate reduc 79.8 3.7 8E-05 37.1 5.2 35 194-229 164-199 (386)
372 PRK12778 putative bifunctional 79.7 3.4 7.4E-05 40.6 5.3 34 194-228 430-463 (752)
373 PTZ00414 10 kDa heat shock pro 79.7 5 0.00011 28.9 4.8 23 72-94 46-72 (100)
374 cd01485 E1-1_like Ubiquitin ac 79.4 4.1 8.8E-05 33.1 4.9 33 196-228 20-52 (198)
375 PRK00811 spermidine synthase; 79.1 4.9 0.00011 34.6 5.6 44 194-238 76-119 (283)
376 TIGR01373 soxB sarcosine oxida 79.1 3.7 7.9E-05 36.9 5.0 39 190-228 25-64 (407)
377 cd01492 Aos1_SUMO Ubiquitin ac 79.0 4.3 9.4E-05 32.9 4.9 34 195-228 21-54 (197)
378 PLN02852 ferredoxin-NADP+ redu 78.9 4 8.7E-05 38.1 5.3 37 193-230 24-62 (491)
379 TIGR01381 E1_like_apg7 E1-like 78.9 3.8 8.3E-05 39.3 5.1 35 194-228 337-371 (664)
380 COG2264 PrmA Ribosomal protein 78.9 12 0.00025 32.7 7.7 73 158-237 130-203 (300)
381 PLN02970 serine racemase 78.7 7.9 0.00017 34.0 6.9 48 196-243 76-125 (328)
382 COG0281 SfcA Malic enzyme [Ene 78.7 6.1 0.00013 35.8 6.1 49 180-228 184-234 (432)
383 PLN02477 glutamate dehydrogena 78.6 4.4 9.5E-05 36.9 5.3 34 194-228 205-239 (410)
384 PRK14533 groES co-chaperonin G 78.6 5.9 0.00013 28.0 4.9 24 72-95 37-64 (91)
385 cd06448 L-Ser-dehyd Serine deh 78.6 7.5 0.00016 34.0 6.7 51 193-243 49-101 (316)
386 PRK05479 ketol-acid reductoiso 78.5 6 0.00013 34.9 6.0 46 194-240 16-62 (330)
387 PRK13942 protein-L-isoaspartat 78.5 9.5 0.00021 31.2 6.9 51 186-237 68-119 (212)
388 PLN02463 lycopene beta cyclase 78.4 3.6 7.9E-05 37.9 4.8 33 197-230 30-62 (447)
389 TIGR02437 FadB fatty oxidation 78.3 5.2 0.00011 39.1 6.1 39 196-235 314-352 (714)
390 TIGR01327 PGDH D-3-phosphoglyc 78.3 5.7 0.00012 37.4 6.2 34 194-228 137-170 (525)
391 PRK06153 hypothetical protein; 78.2 3.5 7.6E-05 37.1 4.5 35 195-229 176-210 (393)
392 PF13738 Pyr_redox_3: Pyridine 78.2 3.9 8.4E-05 32.6 4.5 38 193-231 165-202 (203)
393 PRK08294 phenol 2-monooxygenas 78.2 2.8 6E-05 40.4 4.1 34 196-230 33-67 (634)
394 PLN02356 phosphateglycerate ki 78.2 9.7 0.00021 34.8 7.4 54 190-243 99-154 (423)
395 TIGR02441 fa_ox_alpha_mit fatt 78.2 5.3 0.00011 39.3 6.1 39 196-235 336-374 (737)
396 PF10727 Rossmann-like: Rossma 78.0 2.8 6.2E-05 31.6 3.3 41 196-237 11-52 (127)
397 PF01135 PCMT: Protein-L-isoas 77.9 6.9 0.00015 32.1 5.9 50 186-236 64-114 (209)
398 PRK13581 D-3-phosphoglycerate 77.8 5.8 0.00013 37.4 6.1 35 194-229 139-173 (526)
399 PRK07878 molybdopterin biosynt 77.5 4.4 9.6E-05 36.6 5.0 35 195-229 42-76 (392)
400 PRK08605 D-lactate dehydrogena 77.3 4.9 0.00011 35.4 5.1 37 194-231 145-182 (332)
401 PRK07411 hypothetical protein; 77.2 4.6 0.0001 36.5 5.0 34 196-229 39-72 (390)
402 PF00056 Ldh_1_N: lactate/mala 77.0 9.2 0.0002 29.2 6.0 37 197-233 2-40 (141)
403 PRK11749 dihydropyrimidine deh 77.0 8.4 0.00018 35.4 6.8 50 192-241 270-327 (457)
404 PRK07048 serine/threonine dehy 77.0 9 0.00019 33.5 6.7 48 196-243 73-122 (321)
405 KOG0069 Glyoxylate/hydroxypyru 76.8 4.5 9.8E-05 35.7 4.7 47 193-240 160-206 (336)
406 PLN02576 protoporphyrinogen ox 76.8 3.9 8.4E-05 37.8 4.6 33 196-229 13-46 (496)
407 PRK09414 glutamate dehydrogena 76.8 8.7 0.00019 35.4 6.7 32 193-225 230-261 (445)
408 PF00208 ELFV_dehydrog: Glutam 76.6 4.1 8.9E-05 34.3 4.3 32 193-225 30-61 (244)
409 PRK06608 threonine dehydratase 76.6 8.7 0.00019 34.0 6.5 47 197-243 74-122 (338)
410 TIGR01137 cysta_beta cystathio 76.5 11 0.00025 34.4 7.6 55 188-242 55-111 (454)
411 PF01946 Thi4: Thi4 family; PD 76.3 4.4 9.5E-05 33.6 4.2 32 197-229 19-50 (230)
412 PRK12775 putative trifunctiona 75.8 4.7 0.0001 41.0 5.2 34 194-228 429-462 (1006)
413 PLN02712 arogenate dehydrogena 75.7 8 0.00017 37.6 6.5 45 194-240 368-412 (667)
414 COG2242 CobL Precorrin-6B meth 75.7 11 0.00025 30.3 6.3 49 188-237 28-76 (187)
415 cd01561 CBS_like CBS_like: Thi 75.6 14 0.00031 31.6 7.6 51 192-242 50-102 (291)
416 PRK06110 hypothetical protein; 75.6 11 0.00023 33.1 6.8 45 199-243 73-120 (322)
417 PRK15409 bifunctional glyoxyla 75.5 5.8 0.00013 34.9 5.1 35 194-229 144-179 (323)
418 PRK06481 fumarate reductase fl 75.2 5 0.00011 37.5 4.9 34 195-229 61-94 (506)
419 KOG1203 Predicted dehydrogenas 75.1 6.5 0.00014 35.7 5.3 43 192-235 76-119 (411)
420 PF02670 DXP_reductoisom: 1-de 75.1 7.6 0.00016 29.4 4.9 43 198-241 1-49 (129)
421 PLN02985 squalene monooxygenas 75.0 4.9 0.00011 37.7 4.8 34 195-229 43-76 (514)
422 PRK08246 threonine dehydratase 74.9 14 0.0003 32.2 7.2 50 194-243 67-118 (310)
423 PLN00011 cysteine synthase 74.6 13 0.00029 32.5 7.2 56 188-243 61-119 (323)
424 PLN02852 ferredoxin-NADP+ redu 74.5 6.1 0.00013 36.9 5.2 26 192-217 163-188 (491)
425 PRK09288 purT phosphoribosylgl 74.4 6 0.00013 35.4 5.1 34 196-230 13-46 (395)
426 KOG0685 Flavin-containing amin 74.0 6.5 0.00014 36.3 5.0 37 193-229 19-55 (498)
427 KOG2018 Predicted dinucleotide 73.8 5.7 0.00012 34.8 4.4 36 194-229 73-108 (430)
428 PLN02366 spermidine synthase 73.8 8.4 0.00018 33.6 5.6 45 193-238 90-134 (308)
429 PRK07121 hypothetical protein; 73.6 5.5 0.00012 36.9 4.7 33 196-229 21-53 (492)
430 PTZ00367 squalene epoxidase; P 73.6 5.5 0.00012 37.9 4.7 33 196-229 34-66 (567)
431 PRK06046 alanine dehydrogenase 73.3 16 0.00036 32.0 7.4 44 193-236 127-171 (326)
432 TIGR02440 FadJ fatty oxidation 73.2 9 0.0002 37.4 6.2 39 196-235 305-344 (699)
433 cd05312 NAD_bind_1_malic_enz N 73.2 8.7 0.00019 33.1 5.4 35 194-228 24-68 (279)
434 PRK11154 fadJ multifunctional 72.8 8.8 0.00019 37.6 6.0 40 195-235 309-349 (708)
435 PF03949 Malic_M: Malic enzyme 72.8 6 0.00013 33.6 4.3 45 184-228 14-68 (255)
436 PF13580 SIS_2: SIS domain; PD 72.3 10 0.00022 28.7 5.2 40 186-226 95-137 (138)
437 PRK12770 putative glutamate sy 72.1 12 0.00026 32.9 6.4 33 195-227 172-204 (352)
438 PF10294 Methyltransf_16: Puta 72.1 5.5 0.00012 31.5 3.8 45 190-236 41-85 (173)
439 PLN02948 phosphoribosylaminoim 72.0 7.8 0.00017 37.0 5.4 37 193-230 20-56 (577)
440 COG1648 CysG Siroheme synthase 72.0 11 0.00025 30.9 5.7 35 194-229 11-45 (210)
441 PRK09754 phenylpropionate diox 71.9 7.3 0.00016 35.0 5.0 37 192-229 141-177 (396)
442 PF12242 Eno-Rase_NADH_b: NAD( 71.8 8.8 0.00019 26.2 4.1 38 190-228 34-73 (78)
443 PRK13255 thiopurine S-methyltr 71.8 13 0.00029 30.6 6.1 42 191-235 34-75 (218)
444 TIGR01127 ilvA_1Cterm threonin 71.8 16 0.00034 32.8 7.1 47 197-243 50-98 (380)
445 PRK13944 protein-L-isoaspartat 71.7 17 0.00036 29.5 6.7 50 186-236 64-114 (205)
446 cd00762 NAD_bind_malic_enz NAD 71.6 6.8 0.00015 33.2 4.4 36 193-228 23-68 (254)
447 PLN02712 arogenate dehydrogena 71.6 13 0.00028 36.2 6.8 43 196-240 53-95 (667)
448 PRK06382 threonine dehydratase 71.5 16 0.00034 33.2 7.1 46 198-243 76-123 (406)
449 PRK06381 threonine synthase; V 71.4 11 0.00023 33.0 5.7 47 197-243 64-113 (319)
450 PRK15317 alkyl hydroperoxide r 70.9 7.3 0.00016 36.5 4.9 31 195-226 211-241 (517)
451 cd00640 Trp-synth-beta_II Tryp 70.7 17 0.00037 30.2 6.6 49 194-242 49-99 (244)
452 PRK12778 putative bifunctional 70.7 11 0.00024 37.1 6.2 37 192-228 567-603 (752)
453 PRK05562 precorrin-2 dehydroge 70.5 12 0.00026 31.1 5.5 34 194-228 24-57 (223)
454 KOG0399 Glutamate synthase [Am 70.2 6 0.00013 40.6 4.2 36 193-229 1783-1818(2142)
455 PRK01747 mnmC bifunctional tRN 70.1 7.5 0.00016 37.6 4.9 32 196-228 261-292 (662)
456 PF03059 NAS: Nicotianamine sy 70.0 7.4 0.00016 33.4 4.3 44 195-238 121-165 (276)
457 PRK08813 threonine dehydratase 69.9 20 0.00043 32.0 7.1 46 198-243 84-131 (349)
458 TIGR03840 TMPT_Se_Te thiopurin 69.9 19 0.0004 29.6 6.5 41 192-235 32-72 (213)
459 PRK12775 putative trifunctiona 69.8 13 0.00028 38.0 6.6 36 192-227 568-603 (1006)
460 PRK01581 speE spermidine synth 69.8 15 0.00034 32.9 6.4 44 193-237 149-192 (374)
461 cd01491 Ube1_repeat1 Ubiquitin 69.8 10 0.00022 32.8 5.1 35 195-229 19-53 (286)
462 PLN00016 RNA-binding protein; 69.4 6.5 0.00014 35.0 4.1 38 193-231 50-92 (378)
463 PRK08287 cobalt-precorrin-6Y C 69.4 19 0.00041 28.5 6.5 49 188-237 25-73 (187)
464 PRK00216 ubiE ubiquinone/menaq 69.4 15 0.00033 29.9 6.0 49 189-238 46-95 (239)
465 PRK13656 trans-2-enoyl-CoA red 69.3 11 0.00024 34.1 5.4 33 193-227 39-74 (398)
466 PF00166 Cpn10: Chaperonin 10 69.3 12 0.00025 26.5 4.6 26 71-96 35-69 (93)
467 TIGR00080 pimt protein-L-isoas 69.1 20 0.00044 29.2 6.7 51 186-237 69-120 (215)
468 TIGR02035 D_Ser_am_lyase D-ser 69.0 17 0.00036 33.4 6.6 46 198-243 154-202 (431)
469 TIGR03329 Phn_aa_oxid putative 69.0 7.8 0.00017 35.6 4.6 31 197-228 26-58 (460)
470 PTZ00245 ubiquitin activating 68.9 11 0.00023 32.3 4.9 34 196-229 27-60 (287)
471 PRK07476 eutB threonine dehydr 68.9 18 0.00039 31.6 6.6 46 198-243 70-117 (322)
472 TIGR02991 ectoine_eutB ectoine 68.7 18 0.00039 31.6 6.6 48 196-243 68-117 (317)
473 PRK14191 bifunctional 5,10-met 68.7 29 0.00062 30.0 7.6 56 175-232 137-194 (285)
474 TIGR00438 rrmJ cell division p 68.6 12 0.00025 29.8 5.0 42 189-230 27-68 (188)
475 PRK04457 spermidine synthase; 68.3 18 0.0004 30.6 6.4 45 193-238 65-109 (262)
476 cd06447 D-Ser-dehyd D-Serine d 68.0 23 0.00049 32.3 7.2 46 198-243 136-184 (404)
477 TIGR03140 AhpF alkyl hydropero 68.0 8.6 0.00019 36.0 4.7 33 193-226 210-242 (515)
478 PRK12814 putative NADPH-depend 67.9 17 0.00036 35.2 6.8 38 191-228 319-356 (652)
479 TIGR00477 tehB tellurite resis 67.4 16 0.00035 29.3 5.6 46 188-236 24-69 (195)
480 PLN02529 lysine-specific histo 67.3 9.6 0.00021 37.5 5.0 35 194-229 159-193 (738)
481 PRK08639 threonine dehydratase 67.2 23 0.00049 32.3 7.2 46 196-241 74-121 (420)
482 COG1635 THI4 Ribulose 1,5-bisp 67.1 8.7 0.00019 32.1 3.9 32 196-228 31-62 (262)
483 COG1148 HdrA Heterodisulfide r 67.0 9.1 0.0002 35.6 4.4 38 192-230 121-158 (622)
484 PRK07334 threonine dehydratase 67.0 19 0.00041 32.6 6.6 47 197-243 73-121 (403)
485 TIGR01372 soxA sarcosine oxida 67.0 7.9 0.00017 39.4 4.5 32 196-228 164-195 (985)
486 PRK12835 3-ketosteroid-delta-1 66.8 8.5 0.00019 36.7 4.5 34 195-229 11-44 (584)
487 COG1249 Lpd Pyruvate/2-oxoglut 66.8 11 0.00024 34.9 5.0 37 193-230 171-207 (454)
488 PHA01634 hypothetical protein 66.7 18 0.00039 27.5 5.2 42 194-237 28-69 (156)
489 PLN03075 nicotianamine synthas 66.7 23 0.00049 30.8 6.6 46 194-239 123-169 (296)
490 PLN02464 glycerol-3-phosphate 66.6 9.3 0.0002 36.8 4.7 33 196-229 72-104 (627)
491 PRK12779 putative bifunctional 66.6 15 0.00032 37.3 6.3 34 194-228 446-479 (944)
492 KOG2013 SMT3/SUMO-activating c 66.4 8.5 0.00019 35.6 4.1 36 194-229 11-46 (603)
493 PTZ00098 phosphoethanolamine N 66.4 20 0.00044 30.3 6.3 51 186-238 44-94 (263)
494 PRK09224 threonine dehydratase 66.3 21 0.00045 33.5 6.8 47 197-243 70-118 (504)
495 PRK07402 precorrin-6B methylas 66.3 23 0.00051 28.2 6.4 50 187-237 33-82 (196)
496 PF01113 DapB_N: Dihydrodipico 66.1 15 0.00033 27.2 4.9 33 197-229 2-36 (124)
497 PLN02260 probable rhamnose bio 66.1 14 0.00031 35.6 6.0 52 194-246 379-435 (668)
498 PRK06996 hypothetical protein; 66.0 10 0.00023 33.9 4.7 34 196-229 12-48 (398)
499 PRK12769 putative oxidoreducta 66.0 14 0.0003 35.7 5.8 50 193-242 466-523 (654)
500 PRK00107 gidB 16S rRNA methylt 65.8 21 0.00046 28.6 6.0 45 192-237 43-87 (187)
No 1
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=100.00 E-value=4.1e-52 Score=358.36 Aligned_cols=214 Identities=37% Similarity=0.529 Sum_probs=203.7
Q ss_pred ccceeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccC
Q 025895 7 VITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQ 86 (246)
Q Consensus 7 ~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~ 86 (246)
+++|||+++++.++|++++|++.|+|+++||+|||+|+|+|++|++.+.|.++...+|.++|||.+|+|+++|++|+.|+
T Consensus 1 ~~~mkA~~~~~~~~pl~i~e~~~p~p~~~eVlI~v~~~GVChsDlH~~~G~~~~~~~P~ipGHEivG~V~~vG~~V~~~k 80 (339)
T COG1064 1 MMTMKAAVLKKFGQPLEIEEVPVPEPGPGEVLIKVEACGVCHTDLHVAKGDWPVPKLPLIPGHEIVGTVVEVGEGVTGLK 80 (339)
T ss_pred CcceEEEEEccCCCCceEEeccCCCCCCCeEEEEEEEEeecchhhhhhcCCCCCCCCCccCCcceEEEEEEecCCCccCC
Confidence 47899999999999999999999999999999999999999999999999999888999999999999999999999999
Q ss_pred CCCEEEe-eCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCC
Q 025895 87 PGDHVIP-CYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP 165 (246)
Q Consensus 87 ~Gd~V~~-~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~ 165 (246)
+||||.+ +...+|++|.+|.+|++++|++... .|++ .+| +|+||+++++.+++++|+
T Consensus 81 ~GDrVgV~~~~~~Cg~C~~C~~G~E~~C~~~~~---~gy~-~~G------------------Gyaeyv~v~~~~~~~iP~ 138 (339)
T COG1064 81 VGDRVGVGWLVISCGECEYCRSGNENLCPNQKI---TGYT-TDG------------------GYAEYVVVPARYVVKIPE 138 (339)
T ss_pred CCCEEEecCccCCCCCCccccCcccccCCCccc---ccee-ecC------------------cceeEEEEchHHeEECCC
Confidence 9999999 8899999999999999999999765 5555 555 999999999999999999
Q ss_pred CCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCccc
Q 025895 166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSSKY 244 (246)
Q Consensus 166 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~~~ 244 (246)
+++++.||.+.|+..|.|+++ +..+++||++|+|+|+|++|++++|+|+++|+ +|++++++++|++++++|||+..+
T Consensus 139 ~~d~~~aApllCaGiT~y~al-k~~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga-~Via~~~~~~K~e~a~~lGAd~~i 215 (339)
T COG1064 139 GLDLAEAAPLLCAGITTYRAL-KKANVKPGKWVAVVGAGGLGHMAVQYAKAMGA-EVIAITRSEEKLELAKKLGADHVI 215 (339)
T ss_pred CCChhhhhhhhcCeeeEeeeh-hhcCCCCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEeCChHHHHHHHHhCCcEEE
Confidence 999999999999999999987 44999999999999999999999999999998 999999999999999999999765
No 2
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=100.00 E-value=5.5e-49 Score=333.46 Aligned_cols=235 Identities=60% Similarity=1.037 Sum_probs=227.7
Q ss_pred cceeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCC
Q 025895 8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQP 87 (246)
Q Consensus 8 ~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~ 87 (246)
+++||++.+++++||+++|+.+++|++|||+||+.++|+||+|...++|..+.+ +|.++|||++|+|++||++|+++++
T Consensus 1 mk~~aAV~~~~~~Pl~i~ei~l~~P~~gEVlVri~AtGVCHTD~~~~~G~~p~~-~P~vLGHEgAGiVe~VG~gVt~vkp 79 (366)
T COG1062 1 MKTRAAVAREAGKPLEIEEVDLDPPRAGEVLVRITATGVCHTDAHTLSGDDPEG-FPAVLGHEGAGIVEAVGEGVTSVKP 79 (366)
T ss_pred CCceEeeeecCCCCeEEEEEecCCCCCCeEEEEEEEeeccccchhhhcCCCCCC-CceecccccccEEEEecCCccccCC
Confidence 578999999999999999999999999999999999999999999999998886 9999999999999999999999999
Q ss_pred CCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCC
Q 025895 88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA 167 (246)
Q Consensus 88 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~ 167 (246)
||+|+.....+|++|.+|.+++.++|...+..-+.|.. .+|++++..++.+.+++++.++|++|..+++.++++++++.
T Consensus 80 GDhVI~~f~p~CG~C~~C~sGk~nlC~~~~~~~~kG~m-~dGttrls~~~~~~~h~lG~stFa~y~vv~~~s~vki~~~~ 158 (366)
T COG1062 80 GDHVILLFTPECGQCKFCLSGKPNLCEAIRATQGKGTM-PDGTTRLSGNGVPVYHYLGCSTFAEYTVVHEISLVKIDPDA 158 (366)
T ss_pred CCEEEEcccCCCCCCchhhCCCcccccchhhhcccccc-cCCceeeecCCcceeeeeccccchhheeecccceEECCCCC
Confidence 99999988889999999999999999999998888866 99999999999999999999999999999999999999999
Q ss_pred CchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCccc
Q 025895 168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSSKY 244 (246)
Q Consensus 168 ~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~~~ 244 (246)
+++.++++.|...|.+-++.+.+++++|++|.|+|.|++|++++|-|+..|+.+||++|.+++|++++++|||+..+
T Consensus 159 p~~~a~llGCgV~TG~Gav~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~v 235 (366)
T COG1062 159 PLEKACLLGCGVTTGIGAVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFV 235 (366)
T ss_pred CccceEEEeeeeccChHHhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999655
No 3
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.4e-48 Score=323.53 Aligned_cols=241 Identities=73% Similarity=1.218 Sum_probs=232.9
Q ss_pred CCcccceeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCC
Q 025895 4 EGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVT 83 (246)
Q Consensus 4 ~~~~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~ 83 (246)
....+++||++.+++++||.++|+..++|+..||+||++++++||+|...|++..+...||.++|||++|+|+++|.+|+
T Consensus 2 ~gkvI~CKAAV~w~a~~PL~IEei~V~pPka~EVRIKI~~t~vCHTD~~~~~g~~~~~~fP~IlGHEaaGIVESvGegV~ 81 (375)
T KOG0022|consen 2 AGKVITCKAAVAWEAGKPLVIEEIEVAPPKAHEVRIKILATGVCHTDAYVWSGKDPEGLFPVILGHEAAGIVESVGEGVT 81 (375)
T ss_pred CCCceEEeEeeeccCCCCeeEEEEEeCCCCCceEEEEEEEEeeccccceeecCCCccccCceEecccceeEEEEecCCcc
Confidence 35678999999999999999999999999999999999999999999999999987778999999999999999999999
Q ss_pred ccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEc
Q 025895 84 EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI 163 (246)
Q Consensus 84 ~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i 163 (246)
++++||+|+......|+.|.+|.++..|.|...+.+.+.+.+..||++|+.-+|+.+|++++.++|+||.+++...+++|
T Consensus 82 ~vk~GD~Viplf~p~CgeCk~C~s~ktNlC~~~~~~~~~~~~~~DgtSRF~~~gk~iyHfmg~StFsEYTVv~~~~v~kI 161 (375)
T KOG0022|consen 82 TVKPGDHVIPLFTPQCGECKFCKSPKTNLCEKFRADNGKGGMPYDGTSRFTCKGKPIYHFMGTSTFSEYTVVDDISVAKI 161 (375)
T ss_pred ccCCCCEEeeccccCCCCcccccCCCCChhhhhcccccccccccCCceeeeeCCCceEEecccccceeEEEeecceeEec
Confidence 99999999999999999999999999999999999988888888999999999999999999999999999999999999
Q ss_pred CCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCcc
Q 025895 164 DPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSSK 243 (246)
Q Consensus 164 p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~~ 243 (246)
++..+++.++++.|.+.|+|.|.++.+++++|+++.|+|.|.+|+++++-||+.|+.+||++|.+++|.++++++|++..
T Consensus 162 d~~aPl~kvcLLgCGvsTG~GAa~~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~ 241 (375)
T KOG0022|consen 162 DPSAPLEKVCLLGCGVSTGYGAAWNTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEF 241 (375)
T ss_pred CCCCChhheeEeeccccccchhhhhhcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999854
Q ss_pred c
Q 025895 244 Y 244 (246)
Q Consensus 244 ~ 244 (246)
+
T Consensus 242 i 242 (375)
T KOG0022|consen 242 I 242 (375)
T ss_pred c
Confidence 3
No 4
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=7.8e-45 Score=305.21 Aligned_cols=224 Identities=31% Similarity=0.460 Sum_probs=200.9
Q ss_pred CCCCCcccceeeeEeecCCC--CeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEc
Q 025895 1 MSTEGQVITCKAAVAWEPNK--PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESV 78 (246)
Q Consensus 1 m~~~~~~~~~ka~~~~~~~~--~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~v 78 (246)
|++...+.++++|.++++++ ++++.+++.|+|+++||+||++|+||||+|++.|.+.+....+|.++|||.+|+|+++
T Consensus 1 ~~~~~~p~k~~g~~~~~~~G~l~p~~~~~~~~~~g~~dv~vkI~~cGIChsDlH~~~gdwg~s~~PlV~GHEiaG~Vvkv 80 (360)
T KOG0023|consen 1 MSSMSIPEKQFGWAARDPSGVLSPEVFSFPVREPGENDVLVKIEYCGVCHSDLHAWKGDWGLSKYPLVPGHEIAGVVVKV 80 (360)
T ss_pred CCcccCchhhEEEEEECCCCCCCcceeEcCCCCCCCCcEEEEEEEEeccchhHHHhhccCCcccCCccCCceeeEEEEEE
Confidence 67777889999999999998 5677999999999999999999999999999999999988889999999999999999
Q ss_pred CCCCCccCCCCEEEee-CCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeec
Q 025895 79 GEGVTEVQPGDHVIPC-YQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHD 157 (246)
Q Consensus 79 G~~~~~~~~Gd~V~~~-~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 157 (246)
|+++++|++||||-+- ...+|..|.+|.++.++.|++.-. ...|+. .|| ..++|+|++|+++++
T Consensus 81 Gs~V~~~kiGD~vGVg~~~~sC~~CE~C~~~~E~yCpk~~~-t~~g~~-~DG-------------t~~~ggf~~~~~v~~ 145 (360)
T KOG0023|consen 81 GSNVTGFKIGDRVGVGWLNGSCLSCEYCKSGNENYCPKMHF-TYNGVY-HDG-------------TITQGGFQEYAVVDE 145 (360)
T ss_pred CCCcccccccCeeeeeEEeccccCccccccCCcccCCceeE-eccccc-cCC-------------CCccCccceeEEEee
Confidence 9999999999999654 567999999999999999995322 123333 444 677789999999999
Q ss_pred CceEEcCCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh-hHHHHHh
Q 025895 158 VSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP-KKFDRGM 236 (246)
Q Consensus 158 ~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~-~~~~~~~ 236 (246)
.++++||++++.+.||.+.|+..|.|.+| ...++.||++|.|.|+|++|.+++|+||+||. +|+++++++ +|.+..+
T Consensus 146 ~~a~kIP~~~pl~~aAPlLCaGITvYspL-k~~g~~pG~~vgI~GlGGLGh~aVq~AKAMG~-rV~vis~~~~kkeea~~ 223 (360)
T KOG0023|consen 146 VFAIKIPENLPLASAAPLLCAGITVYSPL-KRSGLGPGKWVGIVGLGGLGHMAVQYAKAMGM-RVTVISTSSKKKEEAIK 223 (360)
T ss_pred eeEEECCCCCChhhccchhhcceEEeehh-HHcCCCCCcEEEEecCcccchHHHHHHHHhCc-EEEEEeCCchhHHHHHH
Confidence 99999999999999999999999999986 66888899999999997799999999999999 999999998 5666667
Q ss_pred hcCCC
Q 025895 237 SCVSS 241 (246)
Q Consensus 237 ~lg~~ 241 (246)
.|||+
T Consensus 224 ~LGAd 228 (360)
T KOG0023|consen 224 SLGAD 228 (360)
T ss_pred hcCcc
Confidence 79998
No 5
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.4e-43 Score=298.24 Aligned_cols=212 Identities=28% Similarity=0.410 Sum_probs=195.4
Q ss_pred ccceeeeEeecCCCCeEEEEeecCCC-CCCeEEEEEeeeecchhhhhhhcCCCCCC---CCCcccccceEEEEEEcCCCC
Q 025895 7 VITCKAAVAWEPNKPLVIEDVQVAPP-QAGEVRIKILFTALCHTDAYTWSGKDPEG---LFPCILGHEAAGIVESVGEGV 82 (246)
Q Consensus 7 ~~~~ka~~~~~~~~~~~~~e~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~~~~~~~---~~p~v~G~e~vG~V~~vG~~~ 82 (246)
..+|+|++++++++ ++++++|.|++ .|+||+|++.++|||++|++.|....... +-|.++|||.+|+|+++|+.|
T Consensus 2 ~~~~~A~vl~g~~d-i~i~~~p~p~i~~p~eVlv~i~a~GICGSDvHy~~~G~ig~~v~k~PmvlGHEssGiV~evG~~V 80 (354)
T KOG0024|consen 2 AADNLALVLRGKGD-IRIEQRPIPTITDPDEVLVAIKAVGICGSDVHYYTHGRIGDFVVKKPMVLGHESSGIVEEVGDEV 80 (354)
T ss_pred CcccceeEEEccCc-eeEeeCCCCCCCCCCEEEEEeeeEEecCccchhhccCCcCccccccccccccccccchhhhcccc
Confidence 36899999999999 99999999997 99999999999999999999997765432 479999999999999999999
Q ss_pred CccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEE
Q 025895 83 TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAK 162 (246)
Q Consensus 83 ~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 162 (246)
+++++||||++-|..+|+.|.+|.+|..|+|.+... .++-..+| ++++|++.+++++++
T Consensus 81 k~LkVGDrVaiEpg~~c~~cd~CK~GrYNlCp~m~f---~atpp~~G------------------~la~y~~~~~dfc~K 139 (354)
T KOG0024|consen 81 KHLKVGDRVAIEPGLPCRDCDFCKEGRYNLCPHMVF---CATPPVDG------------------TLAEYYVHPADFCYK 139 (354)
T ss_pred cccccCCeEEecCCCccccchhhhCcccccCCcccc---ccCCCcCC------------------ceEEEEEechHheee
Confidence 999999999999999999999999999999998765 23323445 999999999999999
Q ss_pred cCCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895 163 IDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS 242 (246)
Q Consensus 163 ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~ 242 (246)
+||++|++++|++. ++.++++|. +++++++|++|||+|+|++|+++...||++|+.+|++++..++|+++++++||+.
T Consensus 140 LPd~vs~eeGAl~e-PLsV~~HAc-r~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~ 217 (354)
T KOG0024|consen 140 LPDNVSFEEGALIE-PLSVGVHAC-RRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATV 217 (354)
T ss_pred CCCCCchhhccccc-chhhhhhhh-hhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeE
Confidence 99999999999876 689999986 7799999999999999999999999999999999999999999999999999984
No 6
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=100.00 E-value=2.6e-40 Score=294.35 Aligned_cols=232 Identities=63% Similarity=1.078 Sum_probs=199.3
Q ss_pred eeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCCCC
Q 025895 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD 89 (246)
Q Consensus 10 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~Gd 89 (246)
|||+++...+++++++++|.|+|+++||+|||++++||++|++.+.+.++...+|.++|||++|+|+++|+++++|++||
T Consensus 2 ~~a~~~~~~~~~l~~~~~~~P~~~~~eVlI~v~a~gi~~sD~~~~~g~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~Gd 81 (368)
T TIGR02818 2 SRAAVAWAAGQPLKIEEVDVEMPQKGEVLVRIVATGVCHTDAFTLSGADPEGVFPVILGHEGAGIVEAVGEGVTSVKVGD 81 (368)
T ss_pred ceEEEEecCCCCeEEEEecCCCCCCCeEEEEEEEecccHHHHHHhcCCCCCCCCCeeeccccEEEEEEECCCCccCCCCC
Confidence 89999999888899999999999999999999999999999999988765556789999999999999999999999999
Q ss_pred EEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCCc
Q 025895 90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL 169 (246)
Q Consensus 90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~ 169 (246)
||++.+..+|++|.+|..+..+.|.+.....+.|.. .+|..++...|.+.++....|+|+||+.+|...++++|+++++
T Consensus 82 rV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~g~~-~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~lP~~l~~ 160 (368)
T TIGR02818 82 HVIPLYTAECGECKFCLSGKTNLCVAVRETQGKGLM-PDGTSRFSKDGQPIYHYMGCSTFSEYTVVPEISLAKINPAAPL 160 (368)
T ss_pred EEEEcCCCCCCCChhhhCCCcccccCcccccccccc-cCCccccccCCCcccccccCccceeeEEechhheEECCCCCCH
Confidence 999999899999999999999999875432222322 1221112222222222223569999999999999999999999
Q ss_pred hhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895 170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS 242 (246)
Q Consensus 170 ~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~ 242 (246)
++++.+++++.|+|+++.+..+++++++|||+|+|++|++++|+|+.+|+.+|++++++++|++.++++|++.
T Consensus 161 ~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~~ 233 (368)
T TIGR02818 161 EEVCLLGCGVTTGIGAVLNTAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATD 233 (368)
T ss_pred HHhhhhcchhHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCe
Confidence 9999999999999998877889999999999999999999999999999977999999999999999999973
No 7
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=100.00 E-value=4.5e-40 Score=292.70 Aligned_cols=235 Identities=69% Similarity=1.164 Sum_probs=202.6
Q ss_pred cceeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCC
Q 025895 8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQP 87 (246)
Q Consensus 8 ~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~ 87 (246)
++|||+++.+++++++++++|.|+|+++||+||+.+++||++|++.+.+..+...+|.++|||++|+|+++|+++++|++
T Consensus 1 ~~~ka~~~~~~~~~~~l~~~~~p~~~~~evlIkv~a~gi~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~ 80 (369)
T cd08301 1 ITCKAAVAWEAGKPLVIEEVEVAPPQAMEVRIKILHTSLCHTDVYFWEAKGQTPLFPRILGHEAAGIVESVGEGVTDLKP 80 (369)
T ss_pred CccEEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEeeCchhHHHhcCCCCCCCCCcccccccceEEEEeCCCCCcccc
Confidence 48999999998888999999999999999999999999999999999887655567899999999999999999999999
Q ss_pred CCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCC
Q 025895 88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA 167 (246)
Q Consensus 88 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~ 167 (246)
||||++.+..+|++|.+|..+..+.|.+.......|....++..++...|...++..+.|+|+||+.++...++++|+++
T Consensus 81 GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~~ 160 (369)
T cd08301 81 GDHVLPVFTGECKECRHCKSEKSNMCDLLRINTDRGVMINDGKSRFSINGKPIYHFVGTSTFSEYTVVHVGCVAKINPEA 160 (369)
T ss_pred CCEEEEccCCCCCCCchhcCCCcccCcCcccccccccccCCCccccccCCcceeeeeccccceeEEEEecccEEECCCCC
Confidence 99999999999999999999999999986543222322122222222233333333455799999999999999999999
Q ss_pred CchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895 168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS 242 (246)
Q Consensus 168 ~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~ 242 (246)
++++++.+.+.+.|+|+++.+..+++++++|||+|+|++|++++|+|+.+|+.+|++++++++|++.++++|++.
T Consensus 161 ~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga~~ 235 (369)
T cd08301 161 PLDKVCLLSCGVSTGLGAAWNVAKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGVTE 235 (369)
T ss_pred CHHHhhhhcchhhHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCce
Confidence 999999999899999998877888999999999999999999999999999877999999999999999999873
No 8
>PLN02740 Alcohol dehydrogenase-like
Probab=100.00 E-value=6.6e-40 Score=293.03 Aligned_cols=238 Identities=60% Similarity=1.084 Sum_probs=199.4
Q ss_pred CcccceeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCC-CCCCcccccceEEEEEEcCCCCC
Q 025895 5 GQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVT 83 (246)
Q Consensus 5 ~~~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~-~~~p~v~G~e~vG~V~~vG~~~~ 83 (246)
+++++|||++++++++++.++|+|.|.|+++||+||+++++||++|++.+.|.... ..+|.++|||++|+|+++|++++
T Consensus 6 ~~~~~mka~~~~~~~~~~~~~e~~~P~~~~~eVlV~v~~~gic~sD~~~~~g~~~~~~~~p~i~GhE~~G~V~~vG~~v~ 85 (381)
T PLN02740 6 GKVITCKAAVAWGPGEPLVMEEIRVDPPQKMEVRIKILYTSICHTDLSAWKGENEAQRAYPRILGHEAAGIVESVGEGVE 85 (381)
T ss_pred ccceeeEEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEecChhhHHHhCCCCcccCCCCccccccceEEEEEeCCCCC
Confidence 35689999999999988999999999999999999999999999999999887532 35789999999999999999999
Q ss_pred ccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCcccccc--CCcceeeccCCcceeeeEEeecCceE
Q 025895 84 EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSI--NGKPIYHFMGTSTFSQYTVVHDVSVA 161 (246)
Q Consensus 84 ~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~ 161 (246)
.+++||||++.+..+|+.|.+|..+..+.|.+....+..+....+|...++. .+...+.....|+|+||+.+|.+.++
T Consensus 86 ~~~vGdrV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~G~~aey~~v~~~~~~ 165 (381)
T PLN02740 86 DLKAGDHVIPIFNGECGDCRYCKRDKTNLCETYRVDPFKSVMVNDGKTRFSTKGDGQPIYHFLNTSTFTEYTVLDSACVV 165 (381)
T ss_pred cCCCCCEEEecCCCCCCCChhhcCCCcccccCccccccccccccCCCcccccccCCCcccccccCccceeEEEEehHHeE
Confidence 9999999999999999999999999999999865321110000111000000 00111112235799999999999999
Q ss_pred EcCCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895 162 KIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS 241 (246)
Q Consensus 162 ~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~ 241 (246)
++|+++++++++.+.+++.|+|+++.+..+++++++|||+|+|++|++++|+|+.+|+.+|++++++++|++.++++|++
T Consensus 166 ~iP~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~ 245 (381)
T PLN02740 166 KIDPNAPLKKMSLLSCGVSTGVGAAWNTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGIT 245 (381)
T ss_pred ECCCCCCHHHhhhhcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCCc
Confidence 99999999999999999999999877788999999999999999999999999999996699999999999999999997
Q ss_pred c
Q 025895 242 S 242 (246)
Q Consensus 242 ~ 242 (246)
.
T Consensus 246 ~ 246 (381)
T PLN02740 246 D 246 (381)
T ss_pred E
Confidence 3
No 9
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=100.00 E-value=1.6e-39 Score=289.26 Aligned_cols=234 Identities=76% Similarity=1.237 Sum_probs=201.7
Q ss_pred cceeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCC
Q 025895 8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQP 87 (246)
Q Consensus 8 ~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~ 87 (246)
.+|||+++.+.+++++++++|.|.|+++||+||+++++||++|.+.+.+.++...+|.++|||++|+|+++|+++++|++
T Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~P~~~~~eVlIrv~a~gi~~~D~~~~~g~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~v 80 (368)
T cd08300 1 ITCKAAVAWEAGKPLSIEEVEVAPPKAGEVRIKILATGVCHTDAYTLSGADPEGLFPVILGHEGAGIVESVGEGVTSVKP 80 (368)
T ss_pred CcceEEEEecCCCCcEEEEeecCCCCCCEEEEEEEEEEechhhHHHhcCCCccCCCCceeccceeEEEEEeCCCCccCCC
Confidence 47999999988888999999999999999999999999999999999887655568999999999999999999999999
Q ss_pred CCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCC
Q 025895 88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA 167 (246)
Q Consensus 88 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~ 167 (246)
||+|+..+..+|+.|.+|..++.+.|.+.......|.. .+|..++..+|.+.++..+.|+|+||+.++...++++|+++
T Consensus 81 GdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~~g~~-~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~l 159 (368)
T cd08300 81 GDHVIPLYTPECGECKFCKSGKTNLCQKIRATQGKGLM-PDGTSRFSCKGKPIYHFMGTSTFSEYTVVAEISVAKINPEA 159 (368)
T ss_pred CCEEEEcCCCCCCCChhhcCCCcCcCCCcccccccccc-CCCccccccCCcccccccccccceeEEEEchhceEeCCCCC
Confidence 99999988899999999999999999875432222222 22222222233333333345799999999999999999999
Q ss_pred CchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895 168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS 242 (246)
Q Consensus 168 ~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~ 242 (246)
++++++.+.+++.++|+++.+..+++++++|||+|+|++|++++|+|+.+|+.+|++++++++|++.++++|++.
T Consensus 160 ~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~lGa~~ 234 (368)
T cd08300 160 PLDKVCLLGCGVTTGYGAVLNTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGATD 234 (368)
T ss_pred ChhhhhhhccchhhhHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCE
Confidence 999999999999999998877888999999999999999999999999999967999999999999999999973
No 10
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=100.00 E-value=8.1e-39 Score=284.99 Aligned_cols=232 Identities=44% Similarity=0.756 Sum_probs=193.7
Q ss_pred eeeeEeecCC--------CCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCC
Q 025895 10 CKAAVAWEPN--------KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 81 (246)
Q Consensus 10 ~ka~~~~~~~--------~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~ 81 (246)
|||+++.+.| +.++++++|.|.|+++||+||+.+++||++|++.+.+.++. .+|.++|||++|+|+++|++
T Consensus 1 mka~~~~~~g~~~~~~~~~~l~~~~~~~P~~~~~evlV~v~~~gi~~~D~~~~~g~~~~-~~p~i~GhE~~G~V~~vG~~ 79 (371)
T cd08281 1 MRAAVLRETGAPTPYADSRPLVIEEVELDPPGPGEVLVKIAAAGLCHSDLSVINGDRPR-PLPMALGHEAAGVVVEVGEG 79 (371)
T ss_pred CcceEEEecccccccccCCCceEEEeecCCCCCCeEEEEEEEEeeCccchHhhcCCCCC-CCCccCCccceeEEEEeCCC
Confidence 7999999866 33899999999999999999999999999999999886543 56899999999999999999
Q ss_pred CCccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceE
Q 025895 82 VTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVA 161 (246)
Q Consensus 82 ~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 161 (246)
++++++||||++.+...|+.|.+|..|..+.|.+.......|.. .+|...+..++.......+.|+|+||+.+|...++
T Consensus 80 v~~~~~GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~~~g~~-~~g~~~~~~~~~~~~~~~g~G~~aey~~v~~~~~~ 158 (371)
T cd08281 80 VTDLEVGDHVVLVFVPSCGHCRPCAEGRPALCEPGAAANGAGTL-LSGGRRLRLRGGEINHHLGVSAFAEYAVVSRRSVV 158 (371)
T ss_pred CCcCCCCCEEEEccCCCCCCCccccCCCcccccCcccccccccc-ccCcccccccCcccccccCcccceeeEEecccceE
Confidence 99999999999888889999999999999999876543222221 11111111111111111123699999999999999
Q ss_pred EcCCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895 162 KIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS 241 (246)
Q Consensus 162 ~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~ 241 (246)
++|+++++++++.+.++..|||+++....+++++++|||.|+|++|++++|+|+.+|+++|++++.+++|++.++++|++
T Consensus 159 ~lP~~l~~~~aa~~~~~~~ta~~~~~~~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~ 238 (371)
T cd08281 159 KIDKDVPLEIAALFGCAVLTGVGAVVNTAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGAT 238 (371)
T ss_pred ECCCCCChHHhhhhcchHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCc
Confidence 99999999999999989999999877888899999999999999999999999999996699999999999999999997
Q ss_pred cc
Q 025895 242 SK 243 (246)
Q Consensus 242 ~~ 243 (246)
..
T Consensus 239 ~~ 240 (371)
T cd08281 239 AT 240 (371)
T ss_pred eE
Confidence 43
No 11
>PLN02827 Alcohol dehydrogenase-like
Probab=100.00 E-value=9e-38 Score=279.01 Aligned_cols=232 Identities=54% Similarity=1.007 Sum_probs=191.6
Q ss_pred cccceeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCcc
Q 025895 6 QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEV 85 (246)
Q Consensus 6 ~~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~ 85 (246)
+...|||+++.++++.++++|+|.|.|+++||+|||.+++||++|++.+.+.. .+|.++|||++|+|+++|+++++|
T Consensus 9 ~~~~mka~~~~~~~~~~~~~e~~~P~~~~~eVlVkv~~~gic~sD~~~~~g~~---~~p~i~GhE~~G~V~~vG~~v~~~ 85 (378)
T PLN02827 9 NVITCRAAVAWGAGEALVMEEVEVSPPQPLEIRIKVVSTSLCRSDLSAWESQA---LFPRIFGHEASGIVESIGEGVTEF 85 (378)
T ss_pred ccceeEEEEEecCCCCceEEEeecCCCCCCEEEEEEEEEecChhHHHHhcCCC---CCCeeecccceEEEEEcCCCCccc
Confidence 34789999999988779999999999999999999999999999999887642 467899999999999999999999
Q ss_pred CCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCC
Q 025895 86 QPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP 165 (246)
Q Consensus 86 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~ 165 (246)
++||+|++.+...|++|.+|.++..++|.+.... ..|....+....+...|...+.....|+|+||+.+|...++++|+
T Consensus 86 ~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~G~~aeyv~v~~~~~~~iP~ 164 (378)
T PLN02827 86 EKGDHVLTVFTGECGSCRHCISGKSNMCQVLGLE-RKGVMHSDQKTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVDP 164 (378)
T ss_pred CCCCEEEEecCCCCCCChhhhCcCcccccCcccc-ccccccCCCcccccccCcccccccccccceeeEEechhheEECCC
Confidence 9999999999889999999999999999874321 011100000000001111111111246999999999999999999
Q ss_pred CCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895 166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS 241 (246)
Q Consensus 166 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~ 241 (246)
++++++++.+.+++.++|+++....+++++++|||+|+|++|++++|+|+++|+..|++++++++|++.++++|++
T Consensus 165 ~l~~~~aa~l~~~~~~a~~~~~~~~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa~ 240 (378)
T PLN02827 165 LAPLHKICLLSCGVAAGLGAAWNVADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVT 240 (378)
T ss_pred CCCHHHhhhhcchhHhhHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCc
Confidence 9999999998888888888776778899999999999999999999999999996688999999999999999997
No 12
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=100.00 E-value=9.6e-38 Score=277.50 Aligned_cols=231 Identities=64% Similarity=1.090 Sum_probs=199.3
Q ss_pred cceeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCC
Q 025895 8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQP 87 (246)
Q Consensus 8 ~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~ 87 (246)
++|||+++.+.+++++++|+|.|.++++||+||++++++|++|++.+.+..+ ..+|.++|||++|+|+++|++++++++
T Consensus 1 ~~~ka~~~~~~~~~~~~~~~~~p~~~~~evlVkv~~~gi~~sD~~~~~g~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~~ 79 (365)
T cd08277 1 IKCKAAVAWEAGKPLVIEEIEVAPPKANEVRIKMLATSVCHTDILAIEGFKA-TLFPVILGHEGAGIVESVGEGVTNLKP 79 (365)
T ss_pred CccEEEEEccCCCCcEEEEEECCCCCCCEEEEEEEEEeechhhHHHhcCCCC-CCCCeecccceeEEEEeeCCCCccCCC
Confidence 4689999998888899999999999999999999999999999999988654 457899999999999999999999999
Q ss_pred CCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCC
Q 025895 88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA 167 (246)
Q Consensus 88 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~ 167 (246)
||+|+..+..+|++|.+|..+..++|.+.... ..|.. .++...+...|...+...+.|+|+||+.++.+.++++|+++
T Consensus 80 GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~-~~g~~-~~~~~~~~~~~~~~~~~~~~g~~ae~~~v~~~~~~~lP~~l 157 (365)
T cd08277 80 GDKVIPLFIGQCGECSNCRSGKTNLCQKYRAN-ESGLM-PDGTSRFTCKGKKIYHFLGTSTFSQYTVVDENYVAKIDPAA 157 (365)
T ss_pred CCEEEECCCCCCCCCchhcCcCcccCcCcccc-ccccc-cCCccccccCCcccccccccccceeeEEEchhheEECCCCC
Confidence 99999988899999999999999999986532 12222 22222222233333333345799999999999999999999
Q ss_pred CchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895 168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS 241 (246)
Q Consensus 168 ~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~ 241 (246)
++++++.+.+++.|+|+++.+...++++++|||+|+|++|++++|+|+.+|+.+|++++++++|++.++++|++
T Consensus 158 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ga~ 231 (365)
T cd08277 158 PLEHVCLLGCGFSTGYGAAWNTAKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGAT 231 (365)
T ss_pred CHHHhhHhcchhHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCC
Confidence 99999999999999999877788899999999999999999999999999997799999999999999999987
No 13
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=100.00 E-value=8.9e-38 Score=276.97 Aligned_cols=224 Identities=40% Similarity=0.654 Sum_probs=192.1
Q ss_pred ceeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCCC
Q 025895 9 TCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG 88 (246)
Q Consensus 9 ~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~G 88 (246)
||||+++.+++++++++|+|.|.|+++||+|||.+++||++|++.+.+..+. .+|.++|||++|+|+++|+++++|++|
T Consensus 1 ~mka~~~~~~~~~~~~~~~~~p~~~~~evlV~v~~~gi~~~D~~~~~g~~~~-~~p~i~G~e~~G~V~~vG~~v~~~~~G 79 (358)
T TIGR03451 1 TVRGVIARSKGAPVELETIVVPDPGPGEVIVDIQACGVCHTDLHYREGGIND-EFPFLLGHEAAGVVEAVGEGVTDVAPG 79 (358)
T ss_pred CcEEEEEccCCCCCEEEEEECCCCCCCeEEEEEEEEeecHHHHHHhcCCccc-cCCcccccceEEEEEEeCCCCcccCCC
Confidence 6999999999988999999999999999999999999999999998886532 578999999999999999999999999
Q ss_pred CEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCC
Q 025895 89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP 168 (246)
Q Consensus 89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~ 168 (246)
|+|++.+...|+.|.+|..+..+.|.+..... ......+| .........|+|+||+.+|.+.++++|++++
T Consensus 80 drV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~-~~~~~~~g--------~~~~~~~~~G~~aey~~v~~~~~~~ip~~~~ 150 (358)
T TIGR03451 80 DYVVLNWRAVCGQCRACKRGRPWYCFDTHNAT-QKMTLTDG--------TELSPALGIGAFAEKTLVHAGQCTKVDPAAD 150 (358)
T ss_pred CEEEEccCCCCCCChHHhCcCcccCcCccccc-cccccccC--------cccccccccccccceEEEehhheEECCCCCC
Confidence 99999999999999999999999998532110 00000001 0000001246999999999999999999999
Q ss_pred chhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895 169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS 242 (246)
Q Consensus 169 ~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~ 242 (246)
+++++.+.+.+.++|.++.+...++++++|||+|+|++|++++|+|+.+|+.+|++++++++|++.++++|++.
T Consensus 151 ~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~ 224 (358)
T TIGR03451 151 PAAAGLLGCGVMAGLGAAVNTGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATH 224 (358)
T ss_pred hhHhhhhcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCce
Confidence 99999999899999987777788999999999999999999999999999966999999999999999999974
No 14
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=100.00 E-value=1.3e-37 Score=273.50 Aligned_cols=210 Identities=28% Similarity=0.452 Sum_probs=187.7
Q ss_pred eeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCC-CCCCcccccceEEEEEEcCCCCCccCCC
Q 025895 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQPG 88 (246)
Q Consensus 10 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~-~~~p~v~G~e~vG~V~~vG~~~~~~~~G 88 (246)
|||+++.+++. ++++++|.|.|+++||+||+.+++||++|++.+.+.+.. ..+|.++|||++|+|+++|++++++++|
T Consensus 1 mka~~~~~~~~-l~~~~~~~p~~~~~evlV~v~~~gi~~~D~~~~~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~G 79 (339)
T cd08239 1 MRGAVFPGDRT-VELREFPVPVPGPGEVLLRVKASGLCGSDLHYYYHGHRAPAYQGVIPGHEPAGVVVAVGPGVTHFRVG 79 (339)
T ss_pred CeEEEEecCCc-eEEEecCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCccCCCCceeccCceEEEEEECCCCccCCCC
Confidence 79999998776 999999999999999999999999999999988766432 2357899999999999999999999999
Q ss_pred CEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCC
Q 025895 89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP 168 (246)
Q Consensus 89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~ 168 (246)
|+|+..+...|+.|.+|..++++.|.+... ..|.. .+ |+|++|+.++...++++|++++
T Consensus 80 d~V~~~~~~~c~~c~~c~~g~~~~c~~~~~--~~g~~-~~------------------G~~ae~~~v~~~~~~~~P~~~~ 138 (339)
T cd08239 80 DRVMVYHYVGCGACRNCRRGWMQLCTSKRA--AYGWN-RD------------------GGHAEYMLVPEKTLIPLPDDLS 138 (339)
T ss_pred CEEEECCCCCCCCChhhhCcCcccCcCccc--ccccC-CC------------------CcceeEEEechHHeEECCCCCC
Confidence 999999999999999999999999987542 12222 23 4999999999999999999999
Q ss_pred chhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895 169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS 242 (246)
Q Consensus 169 ~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~ 242 (246)
+++++.+.+++.|+|+++ ....++++++|||+|+|.+|++++|+|+.+|+++|++++++++|++.++++|++.
T Consensus 139 ~~~aa~l~~~~~ta~~~l-~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~ 211 (339)
T cd08239 139 FADGALLLCGIGTAYHAL-RRVGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADF 211 (339)
T ss_pred HHHhhhhcchHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCE
Confidence 999999999999999986 5577889999999999999999999999999954999999999999999999874
No 15
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=100.00 E-value=4.9e-37 Score=275.42 Aligned_cols=215 Identities=28% Similarity=0.403 Sum_probs=180.2
Q ss_pred ceeeeEeecCCCCeEEEEeecCCCC-------CCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCC
Q 025895 9 TCKAAVAWEPNKPLVIEDVQVAPPQ-------AGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 81 (246)
Q Consensus 9 ~~ka~~~~~~~~~~~~~e~~~p~~~-------~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~ 81 (246)
-|||+++.++++ ++++|+|.|.|+ +|||||||+++|||++|++.+.+..+. .+|.++|||++|+|+++|++
T Consensus 2 ~mka~v~~~~~~-~~~~e~~~P~~~~~~~~~~~~eVlVkv~a~gIcgsD~~~~~g~~~~-~~p~i~GhE~~G~V~~vG~~ 79 (393)
T TIGR02819 2 GNRGVVYLGPGK-VEVQDIDYPKLELPDGRKCEHGVILKVVTTNICGSDQHMVRGRTTA-PTGLVLGHEITGEVIEKGRD 79 (393)
T ss_pred CceEEEEecCCc-eeEEeccCCcccCCCccCCCCeEEEEEEEeeecHHHHHHHCCCCCC-CCCccccceeEEEEEEEcCc
Confidence 489999999887 999999999874 689999999999999999999876532 56899999999999999999
Q ss_pred CCccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCC---CCceecCCCccccccCCcceeeccCCcceeeeEEeecC
Q 025895 82 VTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT---GAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV 158 (246)
Q Consensus 82 ~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~---~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 158 (246)
+++|++||||++.+...|+.|.+|.+|+.++|.+..... ..|.... + ...|+|+||+.+|..
T Consensus 80 V~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~-~--------------~~~G~~aey~~v~~~ 144 (393)
T TIGR02819 80 VEFIKIGDIVSVPFNIACGRCRNCKEGHTGVCLNVNPARAGAAYGYVDM-G--------------GWVGGQSEYVMVPYA 144 (393)
T ss_pred cccccCCCEEEEecccCCCCChHHHCcCcccCcCCCCCCccceeccccc-C--------------CCCCceEEEEEechh
Confidence 999999999999999999999999999999999743110 0111000 0 013599999999964
Q ss_pred --ceEEcCCCCCc----hhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHH
Q 025895 159 --SVAKIDPQAPL----DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKF 232 (246)
Q Consensus 159 --~~~~ip~~~~~----~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~ 232 (246)
+++++|++++. ..++.+..++.++|+++ ...+++++++|||.|+|++|++++|+|+.+|++.+++++++++|+
T Consensus 145 ~~~l~~vP~~~~~~~~~~~~a~l~~~~~ta~~a~-~~~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~ 223 (393)
T TIGR02819 145 DFNLLKFPDRDQALEKIRDLTMLSDIFPTGYHGA-VTAGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARL 223 (393)
T ss_pred hCceEECCCcccccccccceeeeccHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHH
Confidence 79999998753 34566777888999976 457899999999999999999999999999996677778889999
Q ss_pred HHHhhcCCC
Q 025895 233 DRGMSCVSS 241 (246)
Q Consensus 233 ~~~~~lg~~ 241 (246)
++++++|++
T Consensus 224 ~~a~~~Ga~ 232 (393)
T TIGR02819 224 AQARSFGCE 232 (393)
T ss_pred HHHHHcCCe
Confidence 999999996
No 16
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=100.00 E-value=4e-37 Score=271.34 Aligned_cols=213 Identities=20% Similarity=0.307 Sum_probs=180.5
Q ss_pred ccceeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhc-CCCC--CCCCCcccccceEEEEEEcCCCCC
Q 025895 7 VITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWS-GKDP--EGLFPCILGHEAAGIVESVGEGVT 83 (246)
Q Consensus 7 ~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~-~~~~--~~~~p~v~G~e~vG~V~~vG~~~~ 83 (246)
...+|++++.++++ ++++++|.| +.++||||||.++|||++|++.+. +... ...+|.++|||++|+|+++ +++
T Consensus 2 ~~~~~~~~~~~~~~-~~~~~~~~p-~~~~evlVkv~a~gic~sD~~~~~~g~~~~~~~~~p~v~GhE~~G~V~~v--~v~ 77 (343)
T PRK09880 2 QVKTQSCVVAGKKD-VAVTEQEIE-WNNNGTLVQITRGGICGSDLHYYQEGKVGNFVIKAPMVLGHEVIGKIVHS--DSS 77 (343)
T ss_pred cccceEEEEecCCc-eEEEecCCC-CCCCeEEEEEEEEEECccccHhhccCCcccccccCCcccCcccEEEEEEe--cCc
Confidence 46789999999988 999999987 689999999999999999999875 3322 2357899999999999999 678
Q ss_pred ccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEc
Q 025895 84 EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI 163 (246)
Q Consensus 84 ~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i 163 (246)
+|++||+|++.+..+|+.|.+|..+..+.|.+... .|....+ ....|+|+||++++.+.++++
T Consensus 78 ~~~vGdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~---~g~~~~~--------------~~~~G~~aey~~v~~~~~~~~ 140 (343)
T PRK09880 78 GLKEGQTVAINPSKPCGHCKYCLSHNENQCTTMRF---FGSAMYF--------------PHVDGGFTRYKVVDTAQCIPY 140 (343)
T ss_pred cCCCCCEEEECCCCCCcCChhhcCCChhhCCCcce---eeccccc--------------CCCCCceeeeEEechHHeEEC
Confidence 89999999999999999999999999999997553 1211000 011349999999999999999
Q ss_pred CCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895 164 DPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS 242 (246)
Q Consensus 164 p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~ 242 (246)
|+++++++++ +..++.++|+++. .....++++|+|.|+|++|++++|+|+.+|+++|++++++++|+++++++|++.
T Consensus 141 P~~l~~~~aa-~~~~~~~a~~al~-~~~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~ 217 (343)
T PRK09880 141 PEKADEKVMA-FAEPLAVAIHAAH-QAGDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADK 217 (343)
T ss_pred CCCCCHHHHH-hhcHHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcE
Confidence 9999987665 3457788999874 455668999999999999999999999999977999999999999999999984
No 17
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=100.00 E-value=7.4e-37 Score=271.47 Aligned_cols=216 Identities=26% Similarity=0.324 Sum_probs=184.3
Q ss_pred ccceeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccC
Q 025895 7 VITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQ 86 (246)
Q Consensus 7 ~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~ 86 (246)
+++++++.+.+..+++++.++|.|.|+++||+|||.+++||++|++.+.+.++...+|.++|||++|+|+++|+++++|+
T Consensus 10 ~~~~~~~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~gic~sD~~~~~g~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~ 89 (360)
T PLN02586 10 PQKAFGWAARDPSGVLSPFHFSRRENGDEDVTVKILYCGVCHSDLHTIKNEWGFTRYPIVPGHEIVGIVTKLGKNVKKFK 89 (360)
T ss_pred hhheeEEEecCCCCCceEEeecCCCCCCCeEEEEEEEecCChhhHhhhcCCcCCCCCCccCCcceeEEEEEECCCCCccC
Confidence 57778888888777799999999999999999999999999999999887655446789999999999999999999999
Q ss_pred CCCEEEeeCC-CCCCCChhhhCCCCCCCCCccCCC----CCceecCCCccccccCCcceeeccCCcceeeeEEeecCceE
Q 025895 87 PGDHVIPCYQ-AECRECKFCKSGKTNLCGKVRGAT----GAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVA 161 (246)
Q Consensus 87 ~Gd~V~~~~~-~~~~~c~~c~~~~~~~c~~~~~~~----~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 161 (246)
+||+|++.+. .+|+.|.+|..|..+.|.+..... ..|.. .+ |+|+||+.+|.+.++
T Consensus 90 vGdrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~-~~------------------G~~aey~~v~~~~~~ 150 (360)
T PLN02586 90 EGDRVGVGVIVGSCKSCESCDQDLENYCPKMIFTYNSIGHDGTK-NY------------------GGYSDMIVVDQHFVL 150 (360)
T ss_pred CCCEEEEccccCcCCCCccccCCCcccCCCccccccccccCCCc-CC------------------CccceEEEEchHHee
Confidence 9999986554 579999999999999999754210 00111 12 499999999999999
Q ss_pred EcCCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhH-HHHHhhcCC
Q 025895 162 KIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK-FDRGMSCVS 240 (246)
Q Consensus 162 ~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~-~~~~~~lg~ 240 (246)
++|+++++++++.+.+...|+|+++......+++++|||.|+|++|++++|+|+.+|+ +|++++.++++ .+.++++|+
T Consensus 151 ~lP~~ls~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~vi~~~~~~~~~~~~~~~~Ga 229 (360)
T PLN02586 151 RFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISSSSNKEDEAINRLGA 229 (360)
T ss_pred eCCCCCCHHHhhhhhcchHHHHHHHHHhcccCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCcchhhhHHHhCCC
Confidence 9999999999999999999999987666667899999999999999999999999999 78887777665 456678999
Q ss_pred Cc
Q 025895 241 SS 242 (246)
Q Consensus 241 ~~ 242 (246)
+.
T Consensus 230 ~~ 231 (360)
T PLN02586 230 DS 231 (360)
T ss_pred cE
Confidence 73
No 18
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=100.00 E-value=1.2e-36 Score=267.06 Aligned_cols=208 Identities=25% Similarity=0.349 Sum_probs=183.5
Q ss_pred eeEeecCCC----CeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCC
Q 025895 12 AAVAWEPNK----PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQP 87 (246)
Q Consensus 12 a~~~~~~~~----~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~ 87 (246)
|+.+.+++. .++++++|.|.|+++||+||+++++||++|.+.+.|.++...+|.++|||++|+|+++|+++++|++
T Consensus 1 ~~~~~~~g~~~~~~l~~~~~p~P~~~~~evlVkv~~~gi~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~ 80 (329)
T TIGR02822 1 AWEVERPGPIEDGPLRFVERPVPRPGPGELLVRVRACGVCRTDLHVSEGDLPVHRPRVTPGHEVVGEVAGRGADAGGFAV 80 (329)
T ss_pred CeeeecCCcCCCCCceEEeCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCCCCCCCccCCcceEEEEEEECCCCcccCC
Confidence 355665553 3899999999999999999999999999999999887654455789999999999999999999999
Q ss_pred CCEEEeeCC-CCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCC
Q 025895 88 GDHVIPCYQ-AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (246)
Q Consensus 88 Gd~V~~~~~-~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~ 166 (246)
||+|++.+. .+|+.|.+|..+..+.|.+... .|.. .+| +|+||+.+|...++++|++
T Consensus 81 Gd~V~~~~~~~~c~~c~~c~~g~~~~c~~~~~---~g~~-~~G------------------~~aey~~v~~~~~~~lP~~ 138 (329)
T TIGR02822 81 GDRVGIAWLRRTCGVCRYCRRGAENLCPASRY---TGWD-TDG------------------GYAEYTTVPAAFAYRLPTG 138 (329)
T ss_pred CCEEEEcCccCcCCCChHHhCcCcccCCCccc---CCcc-cCC------------------cceeEEEeccccEEECCCC
Confidence 999987654 5799999999999999987653 2322 234 9999999999999999999
Q ss_pred CCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCcc
Q 025895 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSSK 243 (246)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~~ 243 (246)
+++++++.+.+.+.|||+++ ...+++++++|||+|+|++|++++|+|+.+|+ +|++++++++|+++++++|++..
T Consensus 139 ~~~~~aa~l~~~~~ta~~~~-~~~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a~~~Ga~~v 213 (329)
T TIGR02822 139 YDDVELAPLLCAGIIGYRAL-LRASLPPGGRLGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAAARRLALALGAASA 213 (329)
T ss_pred CCHHHhHHHhccchHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHhCCcee
Confidence 99999999999999999987 45789999999999999999999999999999 79999999999999999999843
No 19
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=100.00 E-value=4e-36 Score=267.92 Aligned_cols=234 Identities=58% Similarity=0.969 Sum_probs=204.0
Q ss_pred cccceeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCcc
Q 025895 6 QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEV 85 (246)
Q Consensus 6 ~~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~ 85 (246)
...+||++++..++++++++++|.|.+.++||+||+++++||++|.+.+.+... ..+|.++|||++|+|+++|++++.+
T Consensus 4 ~~~~~~a~~~~~~~~~~~l~~~p~p~~~~~~vlvkv~~~gi~~~D~~~~~g~~~-~~~p~v~G~e~~G~V~~vG~~v~~~ 82 (373)
T cd08299 4 KVIKCKAAVLWEPKKPFSIEEIEVAPPKAHEVRIKIVATGICRSDDHVVSGKLV-TPFPVILGHEAAGIVESVGEGVTTV 82 (373)
T ss_pred ccceeEEEEEecCCCCcEEEEeecCCCCCCEEEEEEEEEEcCcccHHHhcCCCC-CCCCccccccceEEEEEeCCCCccC
Confidence 346799999999888899999999999999999999999999999999988753 3578899999999999999999999
Q ss_pred CCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCC
Q 025895 86 QPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP 165 (246)
Q Consensus 86 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~ 165 (246)
++||+|++.+..+|++|.+|..++.+.|++.......|.. .++..+++.+|.+.++..+.|+|++|+.++.+.++++|+
T Consensus 83 ~~Gd~V~~~~~~~c~~c~~c~~~~~~~c~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~G~~~e~~~v~~~~~~~lP~ 161 (373)
T cd08299 83 KPGDKVIPLFVPQCGKCRACLNPESNLCLKNDLGKPQGLM-QDGTSRFTCKGKPIHHFLGTSTFSEYTVVDEIAVAKIDA 161 (373)
T ss_pred CCCCEEEECCCCCCCCChhhhCCCcccCcCcccccccccc-cCCccccccCCcccccccCCCcccceEEecccceeeCCC
Confidence 9999999988899999999999999999976532212332 333344445555555444568999999999999999999
Q ss_pred CCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895 166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS 241 (246)
Q Consensus 166 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~ 241 (246)
++++++++.+.+++.++|+++....+++++++|+|+|+|++|++++++|+.+|+.+|++++++++|++.++++|++
T Consensus 162 ~l~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~a~~lGa~ 237 (373)
T cd08299 162 AAPLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKDKFAKAKELGAT 237 (373)
T ss_pred CCChHHhheeccchHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCc
Confidence 9999999999999999999877888999999999999899999999999999987799999999999999999986
No 20
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=100.00 E-value=1.4e-36 Score=268.54 Aligned_cols=212 Identities=30% Similarity=0.403 Sum_probs=174.7
Q ss_pred eeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCc-ccccceEEEEEEcCCCCCccCCC
Q 025895 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPC-ILGHEAAGIVESVGEGVTEVQPG 88 (246)
Q Consensus 10 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~-v~G~e~vG~V~~vG~~~~~~~~G 88 (246)
|++++++.++...++++.+.|.+.++||+|||.++|||++|++.+.+..+....|. ++|||++|+|+++| .++.+++|
T Consensus 1 m~a~~~~~~~~~~~~~~~~~p~~~p~~vlVkv~~~gICGSDlh~~~g~~~~~~~~~~i~GHE~~G~V~evG-~~~~~~~G 79 (350)
T COG1063 1 MKAAVVYVGGGDVRLEEPPPPIPGPGDVLIRVTATGICGSDLHIYRGGEPFVPPGDIILGHEFVGEVVEVG-VVRGFKVG 79 (350)
T ss_pred CceeEEEecCCccccccCCCCCCCCCeEEEEEEEEeEchhhhhhccCCCCCCCCCCcccCccceEEEEEec-cccCCCCC
Confidence 67777787776455888877778999999999999999999999999876666666 99999999999999 77789999
Q ss_pred CEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceec-CCCccccccCCcceeeccCCcceeeeEEeecCc-eEEcCCC
Q 025895 89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM-NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVS-VAKIDPQ 166 (246)
Q Consensus 89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~-~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~ip~~ 166 (246)
|||++.+..+|++|.+|..|..++|.+.+..+...... .+| +|+||+.+|.++ +..+|++
T Consensus 80 drVvv~~~~~Cg~C~~C~~G~~~~C~~~~~~g~~~~~~~~~G------------------~~aEyv~vp~~~~~~~~pd~ 141 (350)
T COG1063 80 DRVVVEPNIPCGHCRYCRAGEYNLCENPGFYGYAGLGGGIDG------------------GFAEYVRVPADFNLAKLPDG 141 (350)
T ss_pred CEEEECCCcCCCCChhHhCcCcccCCCccccccccccCCCCC------------------ceEEEEEeccccCeecCCCC
Confidence 99999999999999999999999999654321111110 234 999999999755 5555888
Q ss_pred CCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh-cCCC
Q 025895 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS-CVSS 241 (246)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~-lg~~ 241 (246)
+ ..+++++..++.++|++.......+++++|+|+|+|++|++++++++.+|+.+||+++.+++|++++++ +|++
T Consensus 142 ~-~~~~aal~epla~~~~~~a~~~~~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~ 216 (350)
T COG1063 142 I-DEEAAALTEPLATAYHGHAERAAVRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD 216 (350)
T ss_pred C-ChhhhhhcChhhhhhhhhhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe
Confidence 7 455566666899997763445555666699999999999999999999999999999999999999999 6666
No 21
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=100.00 E-value=6.4e-36 Score=261.52 Aligned_cols=186 Identities=28% Similarity=0.358 Sum_probs=168.6
Q ss_pred eeeeEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCC-CCCCCCCcccccceEEEEEEcCCCCCccC
Q 025895 10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK-DPEGLFPCILGHEAAGIVESVGEGVTEVQ 86 (246)
Q Consensus 10 ~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~-~~~~~~p~v~G~e~vG~V~~vG~~~~~~~ 86 (246)
||++++++.++| ++++|+|.|.|+++||+|||.+++||+.|...+.|. .+..++|.++|.|++|+|+++|++++.|+
T Consensus 1 mka~~~~~~g~~~~l~~~e~~~P~p~~geVlVrV~a~gvN~~D~~~r~G~~~~~~~~P~i~G~d~aG~V~avG~~V~~~~ 80 (326)
T COG0604 1 MKAVVVEEFGGPEVLKVVEVPEPEPGPGEVLVRVKAAGVNPIDVLVRQGLAPPVRPLPFIPGSEAAGVVVAVGSGVTGFK 80 (326)
T ss_pred CeEEEEeccCCCceeEEEecCCCCCCCCeEEEEEEEeecChHHHHhccCCCCCCCCCCCcccceeEEEEEEeCCCCCCcC
Confidence 789999988877 889999999999999999999999999999999987 33446899999999999999999999999
Q ss_pred CCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCC
Q 025895 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (246)
Q Consensus 87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~ 166 (246)
+||+|+..+. .| . .|+|+||..+|+..++++|++
T Consensus 81 ~GdrV~~~~~-~~---------------------------~------------------~G~~AEy~~v~a~~~~~~P~~ 114 (326)
T COG0604 81 VGDRVAALGG-VG---------------------------R------------------DGGYAEYVVVPADWLVPLPDG 114 (326)
T ss_pred CCCEEEEccC-CC---------------------------C------------------CCcceeEEEecHHHceeCCCC
Confidence 9999986530 00 1 249999999999999999999
Q ss_pred CCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS 242 (246)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~ 242 (246)
+|+++||++++++.|||+++++..+++++++|||+|+ |++|++++|+||++|+ .++++.++++|.++++++|||+
T Consensus 115 ls~~eAAal~~~~~TA~~~l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~lGAd~ 190 (326)
T COG0604 115 LSFEEAAALPLAGLTAWLALFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKELGADH 190 (326)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHhcCCCE
Confidence 9999999999999999999999899999999999986 9999999999999998 7777778888888999999983
No 22
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=100.00 E-value=1.3e-35 Score=262.88 Aligned_cols=210 Identities=24% Similarity=0.305 Sum_probs=172.8
Q ss_pred eeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCC---CCCCcccccceEEEEEEcCCCCCccC
Q 025895 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE---GLFPCILGHEAAGIVESVGEGVTEVQ 86 (246)
Q Consensus 10 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~---~~~p~v~G~e~vG~V~~vG~~~~~~~ 86 (246)
|||+++..++.+++++|+|.|+|+++||+|||++++||++|.+.+.|.++. ..+|.++|||++|+|+++|++ ++|+
T Consensus 1 mka~~~~~~~~~l~~~~~p~p~~~~~evlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~i~G~e~~G~V~~vG~~-~~~~ 79 (355)
T cd08230 1 MKAIAVKPGKPGVRVVDIPEPEPTPGEVLVRTLEVGVCGTDREIVAGEYGTAPPGEDFLVLGHEALGVVEEVGDG-SGLS 79 (355)
T ss_pred CceeEecCCCCCCeEEeCCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCCCCCCCCCeeeccccceEEEEecCC-CCCC
Confidence 688998865444999999999999999999999999999999999886532 246789999999999999999 8999
Q ss_pred CCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCC
Q 025895 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (246)
Q Consensus 87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~ 166 (246)
+||||+..+...|++|.+|..++.+.|.+.... ..|....+ |+|+||+.++.+.++++|++
T Consensus 80 vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~-~~g~~~~~------------------G~~aey~~~~~~~~~~~P~~ 140 (355)
T cd08230 80 PGDLVVPTVRRPPGKCLNCRIGRPDFCETGEYT-ERGIKGLH------------------GFMREYFVDDPEYLVKVPPS 140 (355)
T ss_pred CCCEEEeccccCCCcChhhhCcCcccCCCccee-ccCcCCCC------------------ccceeEEEeccccEEECCCC
Confidence 999999998889999999999999999864321 11221123 49999999999999999999
Q ss_pred CCchhhhhccccchhhhhhhh------hhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC---ChhHHHHHhh
Q 025895 167 APLDKVCLLGCGVPTGLGAVW------NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI---DPKKFDRGMS 237 (246)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~l~------~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~---~~~~~~~~~~ 237 (246)
++ +. +.+..++.+++.++. ...+.+++++|+|+|+|++|++++|+||++|+ +|+++++ +++|++++++
T Consensus 141 ~~-~~-a~~~~p~~~~~~a~~~~~~~~~~~~~~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~~ 217 (355)
T cd08230 141 LA-DV-GVLLEPLSVVEKAIEQAEAVQKRLPTWNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVEE 217 (355)
T ss_pred CC-cc-eeecchHHHHHHHHHHHhhhhhhcccCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHH
Confidence 99 43 334445555444332 22335789999999999999999999999999 8999987 6889999999
Q ss_pred cCCCc
Q 025895 238 CVSSS 242 (246)
Q Consensus 238 lg~~~ 242 (246)
+|++.
T Consensus 218 ~Ga~~ 222 (355)
T cd08230 218 LGATY 222 (355)
T ss_pred cCCEE
Confidence 99973
No 23
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=100.00 E-value=5.2e-35 Score=260.88 Aligned_cols=211 Identities=27% Similarity=0.313 Sum_probs=177.3
Q ss_pred eeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCCCCEE
Q 025895 12 AAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHV 91 (246)
Q Consensus 12 a~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~Gd~V 91 (246)
++++.+.++++++.+++.|.|+++||+|||.+++||++|++.+.|.+....+|.++|||++|+|+++|+++++|++||+|
T Consensus 9 ~~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~gic~sD~~~~~G~~~~~~~p~i~GhE~aG~Vv~vG~~v~~~~vGdrV 88 (375)
T PLN02178 9 GWAANDESGVLSPFHFSRRENGENDVTVKILFCGVCHSDLHTIKNHWGFSRYPIIPGHEIVGIATKVGKNVTKFKEGDRV 88 (375)
T ss_pred EEEEccCCCCceEEeecCCCCCCCeEEEEEEEEcCchHHHHHhcCCCCCCCCCcccCceeeEEEEEECCCCCccCCCCEE
Confidence 45555555569999999999999999999999999999999998865434568999999999999999999999999999
Q ss_pred EeeCCC-CCCCChhhhCCCCCCCCCccCCCC----CceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCC
Q 025895 92 IPCYQA-ECRECKFCKSGKTNLCGKVRGATG----AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (246)
Q Consensus 92 ~~~~~~-~~~~c~~c~~~~~~~c~~~~~~~~----~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~ 166 (246)
.+.+.. .|+.|.+|.+|..+.|.+...... .|.. . .|+|+||+.+|.+.++++|++
T Consensus 89 ~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~-~------------------~G~~aey~~v~~~~~~~lP~~ 149 (375)
T PLN02178 89 GVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSDGTR-N------------------QGGYSDVIVVDHRFVLSIPDG 149 (375)
T ss_pred EEcCccCCCCCChhHhCcchhcCCCccccccccccCCCc-C------------------CCccccEEEEchHHeEECCCC
Confidence 876654 699999999999999997643100 0111 1 349999999999999999999
Q ss_pred CCchhhhhccccchhhhhhhhhhCC-CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChh-HHHHHhhcCCCc
Q 025895 167 APLDKVCLLGCGVPTGLGAVWNTAK-VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK-KFDRGMSCVSSS 242 (246)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~l~~~~~-~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~-~~~~~~~lg~~~ 242 (246)
+++++++.+.+...|+|+++..... .+++++|+|.|+|++|++++|+|+.+|+ +|++++.+++ +.+.++++|++.
T Consensus 150 ls~~~aa~l~~~~~ta~~al~~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~Vi~~~~~~~~~~~~a~~lGa~~ 226 (375)
T PLN02178 150 LPSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGVNGLGGLGHIAVKIGKAFGL-RVTVISRSSEKEREAIDRLGADS 226 (375)
T ss_pred CCHHHcchhhccchHHHHHHHHhCCCCCCCCEEEEEcccHHHHHHHHHHHHcCC-eEEEEeCChHHhHHHHHhCCCcE
Confidence 9999999999999999987644332 3689999999999999999999999999 7888887755 478888999974
No 24
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=100.00 E-value=7.7e-35 Score=258.23 Aligned_cols=225 Identities=24% Similarity=0.266 Sum_probs=188.7
Q ss_pred CCCCCcccceeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCC
Q 025895 1 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGE 80 (246)
Q Consensus 1 m~~~~~~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~ 80 (246)
|.+-.....++|+++..++++++++++|.|+|+++||+||+.+++||++|++.+.+.+....+|.++|||++|+|+++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~eVlVrv~a~gi~~~D~~~~~g~~~~~~~p~i~G~E~~G~Vv~vG~ 80 (357)
T PLN02514 1 MGSLEAEKKTTGWAARDPSGHLSPYTYTLRKTGPEDVVIKVIYCGICHTDLHQIKNDLGMSNYPMVPGHEVVGEVVEVGS 80 (357)
T ss_pred CCccCCCceEEEEEEecCCCCceEEeecCCCCCCCcEEEEEEEeccChHHHHhhcCCcCcCCCCccCCceeeEEEEEECC
Confidence 44444456699999999999999999999999999999999999999999999888664445789999999999999999
Q ss_pred CCCccCCCCEEEeeCC-CCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCc
Q 025895 81 GVTEVQPGDHVIPCYQ-AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVS 159 (246)
Q Consensus 81 ~~~~~~~Gd~V~~~~~-~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 159 (246)
++++|++||+|++.+. ..|++|.+|..+..+.|.+.......++ ..| ....|+|++|+.++...
T Consensus 81 ~v~~~~~Gd~V~~~~~~~~c~~C~~c~~g~~~~c~~~~~~~~~~~--~~g-------------~~~~G~~aey~~v~~~~ 145 (357)
T PLN02514 81 DVSKFTVGDIVGVGVIVGCCGECSPCKSDLEQYCNKRIWSYNDVY--TDG-------------KPTQGGFASAMVVDQKF 145 (357)
T ss_pred CcccccCCCEEEEcCccccCCCChhHhCCCcccCCCccccccccc--cCC-------------ccCCCccccEEEEchHH
Confidence 9999999999986554 3699999999999999987532100000 001 11235999999999999
Q ss_pred eEEcCCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH-hhc
Q 025895 160 VAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG-MSC 238 (246)
Q Consensus 160 ~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~-~~l 238 (246)
++++|+++++++++.+++++.|+|+++......+++++|+|+|+|++|++++|+|+.+|+ ++++++.++++++.+ +++
T Consensus 146 ~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~G~vG~~av~~Ak~~G~-~vi~~~~~~~~~~~~~~~~ 224 (357)
T PLN02514 146 VVKIPEGMAPEQAAPLLCAGVTVYSPLSHFGLKQSGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSDKKREEALEHL 224 (357)
T ss_pred eEECCCCCCHHHhhhhhhhHHHHHHHHHHcccCCCCCeEEEEcccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHhc
Confidence 999999999999999999999999987665666899999999999999999999999999 788888888776554 569
Q ss_pred CCC
Q 025895 239 VSS 241 (246)
Q Consensus 239 g~~ 241 (246)
|++
T Consensus 225 Ga~ 227 (357)
T PLN02514 225 GAD 227 (357)
T ss_pred CCc
Confidence 987
No 25
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=100.00 E-value=9.5e-35 Score=256.76 Aligned_cols=205 Identities=31% Similarity=0.467 Sum_probs=181.1
Q ss_pred eEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCC-CCCCCCcccccceEEEEEEcCCCCCccCCCCEE
Q 025895 13 AVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD-PEGLFPCILGHEAAGIVESVGEGVTEVQPGDHV 91 (246)
Q Consensus 13 ~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~-~~~~~p~v~G~e~vG~V~~vG~~~~~~~~Gd~V 91 (246)
+++++++++++++|+|.|.++++||+||+.++++|++|++.+.+.. ....+|.++|||++|+|+++|+++..+ +||+|
T Consensus 2 ~~~~~~g~~~~~~~~p~P~~~~~evlVrv~~~gic~sD~~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~-~GdrV 80 (349)
T TIGR03201 2 WMMTEPGKPMVKTRVEIPELGAGDVVVKVAGCGVCHTDLSYYYMGVRTNHALPLALGHEISGRVIQAGAGAASW-IGKAV 80 (349)
T ss_pred ceEecCCCCceEEeccCCCCCCCeEEEEEEEEeecccchHHHcCCCCccCCCCeeccccceEEEEEeCCCcCCC-CCCEE
Confidence 5677888779999999999999999999999999999999874433 233568999999999999999999877 99999
Q ss_pred EeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCC------
Q 025895 92 IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP------ 165 (246)
Q Consensus 92 ~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~------ 165 (246)
++.+..+|+.|.+|..+..+.|.+... .|.. .+ |+|+||+.+|.+.++++|+
T Consensus 81 ~~~~~~~cg~c~~c~~g~~~~c~~~~~---~g~~-~~------------------G~~ae~~~v~~~~~~~ip~~~~~~~ 138 (349)
T TIGR03201 81 IVPAVIPCGECELCKTGRGTICRAQKM---PGND-MQ------------------GGFASHIVVPAKGLCVVDEARLAAA 138 (349)
T ss_pred EECCCCCCCCChhhhCcCcccCCCCCc---cCcC-CC------------------CcccceEEechHHeEECCccccccc
Confidence 999999999999999999999986543 2221 23 4999999999999999999
Q ss_pred CCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895 166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS 242 (246)
Q Consensus 166 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~ 242 (246)
+++++.++.+.+++.++|+++. ...++++++|+|+|+|++|++++|+|+.+|+ +|++++++++|++.++++|++.
T Consensus 139 ~~~~~~~a~~~~~~~ta~~a~~-~~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~~~Ga~~ 213 (349)
T TIGR03201 139 GLPLEHVSVVADAVTTPYQAAV-QAGLKKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKGFGADL 213 (349)
T ss_pred CCCHHHhhhhcchHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHhCCce
Confidence 8999999988889999999764 5788999999999999999999999999999 8999999999999999999973
No 26
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=100.00 E-value=6.8e-34 Score=252.81 Aligned_cols=231 Identities=59% Similarity=1.032 Sum_probs=206.6
Q ss_pred eeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCCCC
Q 025895 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD 89 (246)
Q Consensus 10 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~Gd 89 (246)
+||+++.+.+++++++++|.|.+++++|+||+.++++|+.|++.+.+... ..+|.++|||++|+|+++|++++.+++||
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~p~~~~~~vlv~v~~~~i~~~d~~~~~g~~~-~~~~~i~g~e~~G~V~~vG~~v~~~~~Gd 79 (365)
T cd05279 1 CKAAVLWEKGKPLSIEEIEVAPPKAGEVRIKVVATGVCHTDLHVIDGKLP-TPLPVILGHEGAGIVESIGPGVTTLKPGD 79 (365)
T ss_pred CceeEEecCCCCcEEEEeecCCCCCCeEEEEEEEeeecchhHHHhcCCCC-CCCCcccccceeEEEEEeCCCcccCCCCC
Confidence 47899998887799999999999999999999999999999998887654 34678999999999999999999999999
Q ss_pred EEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCCc
Q 025895 90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL 169 (246)
Q Consensus 90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~ 169 (246)
+|+..+..+|++|.+|..+..+.|......+..|.. .+|..++.-+|...++..+.|+|++|+.++.+.++++|+++++
T Consensus 80 ~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~lP~~~~~ 158 (365)
T cd05279 80 KVIPLFGPQCGKCKQCLNPRPNLCSKSRGTNGRGLM-SDGTSRFTCKGKPIHHFLGTSTFAEYTVVSEISLAKIDPDAPL 158 (365)
T ss_pred EEEEcCCCCCCCChhhcCCCcccCCCcccccccccc-cCCcceeeccCCccccccccccccceEEecCCceEECCCCCCH
Confidence 999998899999999999999999988776666655 5566666666766666667789999999999999999999999
Q ss_pred hhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895 170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS 242 (246)
Q Consensus 170 ~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~ 242 (246)
++++.+.+++.++|+++.....++++++|||+|+|++|++++++|+.+|+..|++++++++|++.++++|++.
T Consensus 159 ~~a~~~~~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~ 231 (365)
T cd05279 159 EKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQLGATE 231 (365)
T ss_pred HHhhHhccchhHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCCe
Confidence 9999999899999998878888999999999988999999999999999966888888999999999999863
No 27
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=100.00 E-value=5.2e-34 Score=251.43 Aligned_cols=203 Identities=16% Similarity=0.159 Sum_probs=167.3
Q ss_pred ceeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCC----CCCCcccccceEEEEEEcCCCCCc
Q 025895 9 TCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE----GLFPCILGHEAAGIVESVGEGVTE 84 (246)
Q Consensus 9 ~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~----~~~p~v~G~e~vG~V~~vG~~~~~ 84 (246)
..|+++++++++ ++++|.|.|. +++||+|||+++|||++|++++.|.+.. ..+|.++|||++|+|+++|.+ .
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~P~-~~~eVlVkv~a~gIc~sD~~~~~G~~~~~~~~~~~P~i~GhE~~G~V~~~g~~--~ 77 (341)
T cd08237 2 INQVYRLVRPKF-FEVTYEEENL-REDWVIVRPTYLSICHADQRYYQGNRSPEALKKKLPMALIHEGIGVVVSDPTG--T 77 (341)
T ss_pred cccceEEeccce-EEEeecCCCC-CCCeEEEEEEEEEEcCccHHHHcCCCCcccccCCCCeeccceeEEEEEeeCCC--c
Confidence 468899999987 9999999995 9999999999999999999999886532 257999999999999998864 6
Q ss_pred cCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcC
Q 025895 85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID 164 (246)
Q Consensus 85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip 164 (246)
|++||||.+.+...|+.| .| ...+.|.+... .|.. .+| +|+||+.+|.+.++++|
T Consensus 78 ~~vGdrV~~~~~~~~~~~-~~--~~~~~c~~~~~---~g~~-~~G------------------~~aey~~v~~~~~~~vP 132 (341)
T cd08237 78 YKVGTKVVMVPNTPVEKD-EI--IPENYLPSSRF---RSSG-YDG------------------FMQDYVFLPPDRLVKLP 132 (341)
T ss_pred cCCCCEEEECCCCCchhc-cc--chhccCCCcce---eEec-CCC------------------ceEEEEEEchHHeEECC
Confidence 999999999887777743 45 34567765432 1211 234 89999999999999999
Q ss_pred CCCCchhhhhccccchhhhhhhhh--hCCCCCCCEEEEECCCHHHHHHHHHHHH-cCCCeEEEEcCChhHHHHHhhcCCC
Q 025895 165 PQAPLDKVCLLGCGVPTGLGAVWN--TAKVEPGSIVAVFGLGTVGLAVAEGAKA-AGASRVIGIDIDPKKFDRGMSCVSS 241 (246)
Q Consensus 165 ~~~~~~~aa~l~~~~~ta~~~l~~--~~~~~~~~~VlI~Gag~~G~~ai~~a~~-~G~~~vi~~~~~~~~~~~~~~lg~~ 241 (246)
+++++++|+.+ .++.++|+++.. ...++++++|||+|+|++|++++|+++. +|..+|++++++++|++.+++++++
T Consensus 133 ~~l~~~~aa~~-~~~~~a~~a~~~~~~~~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~ 211 (341)
T cd08237 133 DNVDPEVAAFT-ELVSVGVHAISRFEQIAHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADET 211 (341)
T ss_pred CCCChHHhhhh-chHHHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCce
Confidence 99999987755 477888887643 3456889999999999999999999986 6655899999999999999887665
No 28
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=9.2e-34 Score=250.08 Aligned_cols=207 Identities=28% Similarity=0.420 Sum_probs=177.8
Q ss_pred eeeeEeecCCCCeEEEEeecCCC-CCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCCC
Q 025895 10 CKAAVAWEPNKPLVIEDVQVAPP-QAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG 88 (246)
Q Consensus 10 ~ka~~~~~~~~~~~~~e~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~G 88 (246)
|||++++++++ ++++|+|.|.| .++||+|||.++++|++|...+..... ..+|.++|||++|+|+++|+++++|++|
T Consensus 1 Mka~~~~~~~~-~~~~~~~~P~~~~~~evlV~v~~~gi~~~D~~~~~~~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~vG 78 (347)
T PRK10309 1 MKSVVNDTDGI-VRVAESPIPEIKHQDDVLVKVASSGLCGSDIPRIFKNGA-HYYPITLGHEFSGYVEAVGSGVDDLHPG 78 (347)
T ss_pred CceEEEeCCCc-eEEEECCCCCCCCCCEEEEEEEEEEEchhcHHHHhCCCC-CCCCcccccceEEEEEEeCCCCCCCCCC
Confidence 78999999886 99999999998 599999999999999999875432211 1357899999999999999999999999
Q ss_pred CEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCC
Q 025895 89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP 168 (246)
Q Consensus 89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~ 168 (246)
|+|++.+..+|+.|.+|..|..+.|.+... .|.. .+ |+|++|+.++.+.++++|++++
T Consensus 79 d~V~~~~~~~c~~c~~c~~g~~~~c~~~~~---~g~~-~~------------------G~~aey~~v~~~~~~~lP~~~s 136 (347)
T PRK10309 79 DAVACVPLLPCFTCPECLRGFYSLCAKYDF---IGSR-RD------------------GGNAEYIVVKRKNLFALPTDMP 136 (347)
T ss_pred CEEEECCCcCCCCCcchhCcCcccCCCcce---eccC-CC------------------CccceeEEeehHHeEECcCCCC
Confidence 999999999999999999999999986432 2211 23 4999999999999999999999
Q ss_pred chhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895 169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS 242 (246)
Q Consensus 169 ~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~ 242 (246)
+++++.+. .+.++|+++ ....++++++|+|+|+|++|++++|+|+.+|++.|++++++++|++.++++|++.
T Consensus 137 ~~~aa~~~-~~~~~~~~~-~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~~ 208 (347)
T PRK10309 137 IEDGAFIE-PITVGLHAF-HLAQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQ 208 (347)
T ss_pred HHHhhhhh-HHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCce
Confidence 99988763 455577764 5677889999999999999999999999999955899999999999999999873
No 29
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=100.00 E-value=3e-33 Score=247.94 Aligned_cols=217 Identities=29% Similarity=0.451 Sum_probs=188.9
Q ss_pred eeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCc------
Q 025895 11 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTE------ 84 (246)
Q Consensus 11 ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~------ 84 (246)
||+++.++++.++++++|.|.|+++||+||+.++++|+.|.....|.++...+|.++|||++|+|+++|++++.
T Consensus 2 ka~~~~~~~~~l~~~~~~~p~~~~~evlV~v~a~~l~~~d~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~~~~ 81 (361)
T cd08231 2 RAAVLTGPGKPLEIREVPLPDLEPGAVLVRVRLAGVCGSDVHTVAGRRPRVPLPIILGHEGVGRVVALGGGVTTDVAGEP 81 (361)
T ss_pred eEEEEcCCCCCCEEEeccCCCCCCCeEEEEEEEEeecCccHHHhcCCCCCCCCCcccccCCceEEEEeCCCccccccCCc
Confidence 78999998877999999999999999999999999999999988887653467889999999999999999986
Q ss_pred cCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecC-ceEEc
Q 025895 85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV-SVAKI 163 (246)
Q Consensus 85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~i 163 (246)
|++||+|+..+..+|+.|.+|..+..+.|.+.+.. |.....+ .....|+|++|+.++.+ .++++
T Consensus 82 ~~~Gd~V~~~~~~~~~~c~~~~~~~~~~c~~~~~~---~~~~~~~------------~~~~~g~~a~~~~v~~~~~~~~l 146 (361)
T cd08231 82 LKVGDRVTWSVGAPCGRCYRCLVGDPTKCENRKKY---GHEASCD------------DPHLSGGYAEHIYLPPGTAIVRV 146 (361)
T ss_pred cCCCCEEEEcccCCCCCChhHhCcCccccccchhc---ccccccc------------CCCCCcccceEEEecCCCceEEC
Confidence 99999999999999999999999999999976542 2210100 00123599999999986 79999
Q ss_pred CCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895 164 DPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS 242 (246)
Q Consensus 164 p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~ 242 (246)
|+++++++++.+++++.|||+++......+++++|||+|+|.+|++++++|+.+|+++|+++++++++.++++++|++.
T Consensus 147 P~~~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~ 225 (361)
T cd08231 147 PDNVPDEVAAPANCALATVLAALDRAGPVGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFGADA 225 (361)
T ss_pred CCCCCHHHHHHhcCHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCCe
Confidence 9999999999888999999998877666679999999999999999999999999978999999999999999999873
No 30
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=100.00 E-value=4.4e-33 Score=247.57 Aligned_cols=232 Identities=41% Similarity=0.721 Sum_probs=192.4
Q ss_pred cceeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCC
Q 025895 8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQP 87 (246)
Q Consensus 8 ~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~ 87 (246)
++|||+++.++++++++++.|.|.+.+++|+||+.++++|++|+..+.+.++ ..+|.++|||++|+|+++|+++.++++
T Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~~v~Vkv~a~gi~~~d~~~~~g~~~-~~~p~v~G~e~~G~V~~vG~~v~~~~~ 79 (365)
T cd08278 1 MKTTAAVVREPGGPFVLEDVELDDPRPDEVLVRIVATGICHTDLVVRDGGLP-TPLPAVLGHEGAGVVEAVGSAVTGLKP 79 (365)
T ss_pred CccEEeeeccCCCcceEEEeecCCCCCCeEEEEEEEeecCcccHHHhcCCCC-CCCCcccccceeEEEEEeCCCcccCCC
Confidence 5799999999877799999999999999999999999999999999888654 346789999999999999999999999
Q ss_pred CCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccc-cccCCccee-eccCCcceeeeEEeecCceEEcCC
Q 025895 88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSR-FSINGKPIY-HFMGTSTFSQYTVVHDVSVAKIDP 165 (246)
Q Consensus 88 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~-~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~ip~ 165 (246)
||+|++.+. .|++|.+|..+..+.|.+.......|.. .+|-.- ....|.+.+ +....|+|++|+.++.+.++++|+
T Consensus 80 Gd~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~v~~~~~~~iP~ 157 (365)
T cd08278 80 GDHVVLSFA-SCGECANCLSGHPAYCENFFPLNFSGRR-PDGSTPLSLDDGTPVHGHFFGQSSFATYAVVHERNVVKVDK 157 (365)
T ss_pred CCEEEEccc-CCCCChHHhCCCcccccCcccccccccc-cCCcccccccCCcccccccccccceeeEEEecchhEEECCC
Confidence 999998764 8999999999999999865432111211 111000 000000000 022356999999999999999999
Q ss_pred CCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895 166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS 242 (246)
Q Consensus 166 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~ 242 (246)
++++++++.+++++.+|+.++.....++++++|+|+|+|.+|++++++|+++|+..+++++++++|.+.++++|++.
T Consensus 158 ~~s~~~a~~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~~~ 234 (365)
T cd08278 158 DVPLELLAPLGCGIQTGAGAVLNVLKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGATH 234 (365)
T ss_pred CCCHHHhhhhcchhhhhhHHHhhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCcE
Confidence 99999999999999999998878888999999999988999999999999999977999999999999999999873
No 31
>PRK10083 putative oxidoreductase; Provisional
Probab=100.00 E-value=6.2e-33 Score=243.60 Aligned_cols=208 Identities=26% Similarity=0.445 Sum_probs=183.4
Q ss_pred eeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCCCC
Q 025895 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD 89 (246)
Q Consensus 10 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~Gd 89 (246)
|||+++.+++. ++++++|.|.|++++|+||+.+++||++|+..+.+..+...+|.++|||++|+|+++|++++.+++||
T Consensus 1 m~a~~~~~~~~-~~~~~~~~p~~~~~~vlV~v~~~gi~~~d~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd 79 (339)
T PRK10083 1 MKSIVIEKPNS-LAIEERPIPQPAAGEVRVKVKLAGICGSDSHIYRGHNPFAKYPRVIGHEFFGVIDAVGEGVDAARIGE 79 (339)
T ss_pred CeEEEEecCCe-eEEEeccCCCCCCCeEEEEEEEEEEcccchHHHcCCCCcCCCCcccccceEEEEEEECCCCccCCCCC
Confidence 68999998886 99999999999999999999999999999998888765446789999999999999999999999999
Q ss_pred EEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCCc
Q 025895 90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL 169 (246)
Q Consensus 90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~ 169 (246)
+|++.+...|+.|.+|..++.++|.+... .++. . .|+|++|+.++...++++|+++++
T Consensus 80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~------------------~g~~~~~~~~~~~~~~~ip~~~~~ 137 (339)
T PRK10083 80 RVAVDPVISCGHCYPCSIGKPNVCTSLVV---LGVH-R------------------DGGFSEYAVVPAKNAHRIPDAIAD 137 (339)
T ss_pred EEEEccccCCCCCccccCcCcccCCCCce---EEEc-c------------------CCcceeeEEechHHeEECcCCCCH
Confidence 99999999999999999999999986542 1211 1 248999999999999999999999
Q ss_pred hhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHH-cCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895 170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKA-AGASRVIGIDIDPKKFDRGMSCVSSS 242 (246)
Q Consensus 170 ~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~-~G~~~vi~~~~~~~~~~~~~~lg~~~ 242 (246)
+.++ +...+.++|. +....+++++++|+|+|+|.+|++++|+|+. +|+..+++++++++|+++++++|++.
T Consensus 138 ~~a~-~~~~~~~a~~-~~~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~ 209 (339)
T PRK10083 138 QYAV-MVEPFTIAAN-VTGRTGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADW 209 (339)
T ss_pred HHHh-hhchHHHHHH-HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcE
Confidence 8876 4457777885 5577889999999999999999999999996 69977889999999999999999974
No 32
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=100.00 E-value=8.9e-33 Score=244.05 Aligned_cols=209 Identities=30% Similarity=0.481 Sum_probs=182.0
Q ss_pred eeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCC---C--------CCCCCcccccceEEEEEEc
Q 025895 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD---P--------EGLFPCILGHEAAGIVESV 78 (246)
Q Consensus 10 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~---~--------~~~~p~v~G~e~vG~V~~v 78 (246)
|||+++.++++ ++++++|.|+|+++||+||+.++++|++|...+.+.. + ...+|.++|||++|+|+++
T Consensus 1 mka~~~~~~~~-l~~~~~~~p~~~~~evlV~v~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~v 79 (351)
T cd08233 1 MKAARYHGRKD-IRVEEVPEPPVKPGEVKIKVAWCGICGSDLHEYLDGPIFIPTEGHPHLTGETAPVTLGHEFSGVVVEV 79 (351)
T ss_pred CceEEEecCCc-eEEEeccCCCCCCCeEEEEEEEEEECccchHhhcCCCccccccccccccccCCCceecccceEEEEEe
Confidence 78999998876 9999999999999999999999999999987665321 1 1136889999999999999
Q ss_pred CCCCCccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecC
Q 025895 79 GEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV 158 (246)
Q Consensus 79 G~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 158 (246)
|++++.+++||+|...+..+|+.|.+|..+..+.|.+... .|....+ |+|++|+.++..
T Consensus 80 G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~------------------g~~a~~~~~~~~ 138 (351)
T cd08233 80 GSGVTGFKVGDRVVVEPTIKCGTCGACKRGLYNLCDSLGF---IGLGGGG------------------GGFAEYVVVPAY 138 (351)
T ss_pred CCCCCCCCCCCEEEECCCCCCCCChHHhCcCcccCCCCce---eccCCCC------------------CceeeEEEechH
Confidence 9999999999999999988999999999999999986432 2211112 499999999999
Q ss_pred ceEEcCCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhc
Q 025895 159 SVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSC 238 (246)
Q Consensus 159 ~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~l 238 (246)
.++++|+++++++++.+ .+..++|+++ ...+++++++|+|+|+|.+|++++|+|+.+|+.+|+++++++++.+.++++
T Consensus 139 ~~~~lP~~~~~~~aa~~-~~~~ta~~~l-~~~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~ 216 (351)
T cd08233 139 HVHKLPDNVPLEEAALV-EPLAVAWHAV-RRSGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEEL 216 (351)
T ss_pred HeEECcCCCCHHHhhhc-cHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh
Confidence 99999999999988776 5778899987 778899999999999999999999999999997899999999999999999
Q ss_pred CCCc
Q 025895 239 VSSS 242 (246)
Q Consensus 239 g~~~ 242 (246)
|++.
T Consensus 217 ga~~ 220 (351)
T cd08233 217 GATI 220 (351)
T ss_pred CCCE
Confidence 9873
No 33
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=100.00 E-value=1.4e-32 Score=241.30 Aligned_cols=209 Identities=30% Similarity=0.488 Sum_probs=186.5
Q ss_pred eeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCCCC
Q 025895 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD 89 (246)
Q Consensus 10 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~Gd 89 (246)
|||+++++++++++++++|.|.+++++|+||+.++++|++|...+.+..+...+|.++|||++|+|+++|+++.++++||
T Consensus 1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd 80 (333)
T cd08296 1 YKAVQVTEPGGPLELVERDVPLPGPGEVLIKVEACGVCHSDAFVKEGAMPGLSYPRVPGHEVVGRIDAVGEGVSRWKVGD 80 (333)
T ss_pred CeEEEEccCCCCceEEeccCCCCCCCEEEEEEEEEecchHHHHHHhCCCCCCCCCcccCcceeEEEEEECCCCccCCCCC
Confidence 79999999966699999999999999999999999999999998888654445688999999999999999999999999
Q ss_pred EEEeeC-CCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCC
Q 025895 90 HVIPCY-QAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP 168 (246)
Q Consensus 90 ~V~~~~-~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~ 168 (246)
+|++.+ ...|++|.+|..|..+.|.+... .|+. .+| +|++|+.++...++++|++++
T Consensus 81 ~V~~~~~~~~~~~~~~~~~g~~~~c~~~~~---~~~~-~~g------------------~~a~~~~v~~~~~~~lp~~~~ 138 (333)
T cd08296 81 RVGVGWHGGHCGTCDACRRGDFVHCENGKV---TGVT-RDG------------------GYAEYMLAPAEALARIPDDLD 138 (333)
T ss_pred EEEeccccCCCCCChhhhCcCcccCCCCCc---cCcc-cCC------------------cceeEEEEchhheEeCCCCCC
Confidence 998754 46899999999999999997653 2322 233 899999999999999999999
Q ss_pred chhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895 169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS 242 (246)
Q Consensus 169 ~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~ 242 (246)
+++++.+++.+.++|+++.. ..+.++++|||+|+|.+|++++++|+.+|+ +|+++++++++++.++++|++.
T Consensus 139 ~~~aa~l~~~~~ta~~~~~~-~~~~~~~~vlV~g~g~iG~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~~g~~~ 210 (333)
T cd08296 139 AAEAAPLLCAGVTTFNALRN-SGAKPGDLVAVQGIGGLGHLAVQYAAKMGF-RTVAISRGSDKADLARKLGAHH 210 (333)
T ss_pred HHHhhhhhhhhHHHHHHHHh-cCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcCCcE
Confidence 99999999999999998754 589999999999999999999999999999 8999999999999999999863
No 34
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=100.00 E-value=1.6e-32 Score=242.39 Aligned_cols=211 Identities=26% Similarity=0.365 Sum_probs=185.8
Q ss_pred eeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCCCC
Q 025895 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD 89 (246)
Q Consensus 10 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~Gd 89 (246)
|||++++++++ ++++++|.|.++++||+||+.++++|++|++.+.+.+....+|.++|||++|+|+++|++++++++||
T Consensus 1 mka~~~~~~~~-~~l~~~~~p~~~~~evlIkv~a~~i~~~d~~~~~g~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd 79 (351)
T cd08285 1 MKAFAMLGIGK-VGWIEKPIPVCGPNDAIVRPTAVAPCTSDVHTVWGGAPGERHGMILGHEAVGVVEEVGSEVKDFKPGD 79 (351)
T ss_pred CceEEEccCCc-cEEEECCCCCCCCCeEEEEEEEEEechhhHHHhcCCCCCCCCCcccCcceEEEEEEecCCcCccCCCC
Confidence 79999999887 99999999999999999999999999999998877655446689999999999999999999999999
Q ss_pred EEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecC--ceEEcCCCC
Q 025895 90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV--SVAKIDPQA 167 (246)
Q Consensus 90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~ip~~~ 167 (246)
+|+..+..+|+.|..|..++.+.|.+.... .+.. ....|+|++|+.++.. .++++|+++
T Consensus 80 ~V~~~~~~~~~~c~~c~~g~~~~~~~~~~~--~~~~-----------------~~~~g~~~~y~~v~~~~~~~~~lP~~~ 140 (351)
T cd08285 80 RVIVPAITPDWRSVAAQRGYPSQSGGMLGG--WKFS-----------------NFKDGVFAEYFHVNDADANLAPLPDGL 140 (351)
T ss_pred EEEEcCcCCCCCCHHHHCcCcccCcCCCCC--cccc-----------------CCCCcceeEEEEcchhhCceEECCCCC
Confidence 999988889999999999999999864210 0000 0123499999999974 899999999
Q ss_pred CchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895 168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS 241 (246)
Q Consensus 168 ~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~ 241 (246)
++++++.++..+.|+|+++ ....++++++|||+|+|.+|++++|+|+.+|+..+++++++++|+++++++|++
T Consensus 141 ~~~~aa~~~~~~~ta~~~~-~~~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~ 213 (351)
T cd08285 141 TDEQAVMLPDMMSTGFHGA-ELANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGAT 213 (351)
T ss_pred CHHHhhhhccchhhHHHHH-HccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCc
Confidence 9999999988999999974 678899999999998899999999999999997799999999999999999986
No 35
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=100.00 E-value=1.4e-31 Score=235.49 Aligned_cols=211 Identities=30% Similarity=0.477 Sum_probs=187.2
Q ss_pred eeeeEeecCCCCeEEEEeecCCC-CCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCCC
Q 025895 10 CKAAVAWEPNKPLVIEDVQVAPP-QAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG 88 (246)
Q Consensus 10 ~ka~~~~~~~~~~~~~e~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~G 88 (246)
||++++.++++ +++.+.|.|.| .+++|+||+.++++|+.|+..+.+.++..++|.++|+|++|+|+++|++++++++|
T Consensus 1 ~ka~~~~~~~~-~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~G 79 (347)
T cd05278 1 MKALVYLGPGK-IGLEEVPDPKIQGPHDAIVRVTATSICGSDLHIYRGGVPGAKHGMILGHEFVGEVVEVGSDVKRLKPG 79 (347)
T ss_pred CceEEEecCCc-eEEEEcCCCCCCCCCeEEEEEEEEEechhhHHHHcCCCCCCCCCceeccceEEEEEEECCCccccCCC
Confidence 68999998887 99999999999 99999999999999999999988877655678999999999999999999999999
Q ss_pred CEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecC--ceEEcCCC
Q 025895 89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV--SVAKIDPQ 166 (246)
Q Consensus 89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~ip~~ 166 (246)
|+|+..+...|+.|.+|..+...+|.+.......+. ...|+|++|++++.+ .++++|++
T Consensus 80 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~g~~~~~~~v~~~~~~~~~lP~~ 140 (347)
T cd05278 80 DRVSVPCITFCGRCRFCRRGYHAHCENGLWGWKLGN-------------------RIDGGQAEYVRVPYADMNLAKIPDG 140 (347)
T ss_pred CEEEecCCCCCCCChhHhCcCcccCcCCCccccccc-------------------CCCCeeeEEEEecchhCeEEECCCC
Confidence 999999999999999999999999987553211111 123499999999987 89999999
Q ss_pred CCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS 241 (246)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~ 241 (246)
+++++++.+++++.|||+++ ...+++++++|||.|+|.+|++++|+|+.+|+..++++++++++.+.++++|++
T Consensus 141 ~~~~~aa~l~~~~~ta~~~~-~~~~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~~ 214 (347)
T cd05278 141 LPDEDALMLSDILPTGFHGA-ELAGIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGAT 214 (347)
T ss_pred CCHHHHhhhcchhhheeehh-hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCCc
Confidence 99999999999999999986 677899999999988899999999999999965788998999999999999876
No 36
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=100.00 E-value=1.7e-31 Score=239.09 Aligned_cols=224 Identities=31% Similarity=0.412 Sum_probs=187.0
Q ss_pred eeeeEeecCCCCeEEEEeecCCC-CCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCCC
Q 025895 10 CKAAVAWEPNKPLVIEDVQVAPP-QAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG 88 (246)
Q Consensus 10 ~ka~~~~~~~~~~~~~e~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~G 88 (246)
|||++++++++ ++++++|.|.| ++++|+||+.+++||++|...+.|.++..++|.++|||++|+|+++|+++.++++|
T Consensus 1 m~a~~~~~~~~-~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G 79 (386)
T cd08283 1 MKALVWHGKGD-VRVEEVPDPKIEDPTDAIVRVTATAICGSDLHLYHGYIPGMKKGDILGHEFMGVVEEVGPEVRNLKVG 79 (386)
T ss_pred CeeEEEecCCC-ceEEeCCCCCCCCCCeEEEEEEEEecchhhhhhhcCCCCCCCCCccccccceEEEEEeCCCCCCCCCC
Confidence 78999998866 99999999998 59999999999999999999998877655678999999999999999999999999
Q ss_pred CEEEeeCCCCCCCChhhhCCCCCCCCCccCCC-CCceecCCCccccccCCc-ceeeccCCcceeeeEEeecC--ceEEcC
Q 025895 89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGAT-GAGVMMNDRKSRFSINGK-PIYHFMGTSTFSQYTVVHDV--SVAKID 164 (246)
Q Consensus 89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~-~~g~~~~~g~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~--~~~~ip 164 (246)
|+|+..+...|++|.+|..+..++|.+..... ..++ +|....++.|. ... ....|+|++|+.++.+ .++++|
T Consensus 80 d~V~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~g~~~~~~~v~~~~~~~~~lp 155 (386)
T cd08283 80 DRVVVPFTIACGECFYCKRGLYSQCDNTNPSAEMAKL---YGHAGAGIFGYSHLT-GGYAGGQAEYVRVPFADVGPFKIP 155 (386)
T ss_pred CEEEEcCcCCCCCChhhcCCCcccCCCcccccccccc---ccccccccccccccc-CCCCCeeEEEEEcccccCeEEECC
Confidence 99999988899999999999999998754321 0000 00000000000 000 0124599999999987 899999
Q ss_pred CCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcC
Q 025895 165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCV 239 (246)
Q Consensus 165 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg 239 (246)
+++++++++.+++.+.++|+++ ....+.++++|||+|+|.+|++++++|+.+|+.+++++++++++++.+++++
T Consensus 156 ~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~ 229 (386)
T cd08283 156 DDLSDEKALFLSDILPTGYHAA-ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL 229 (386)
T ss_pred CCCCHHHHhhhccchhhhHHHH-hhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC
Confidence 9999999999999999999987 7788999999999988999999999999999856999999999999999883
No 37
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=100.00 E-value=1.5e-31 Score=234.73 Aligned_cols=209 Identities=31% Similarity=0.463 Sum_probs=187.6
Q ss_pred eeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCC---CCCCCcccccceEEEEEEcCCCCCccC
Q 025895 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP---EGLFPCILGHEAAGIVESVGEGVTEVQ 86 (246)
Q Consensus 10 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~---~~~~p~v~G~e~vG~V~~vG~~~~~~~ 86 (246)
||++++.+++.++++.+.+.|.+++++|+||+.++++|+.|+..+.+.+. ...+|.++|+|++|+|+++|+++.+++
T Consensus 1 ~ka~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~ 80 (340)
T cd05284 1 MKAARLYEYGKPLRLEDVPVPEPGPGQVLVRVGGAGVCHSDLHVIDGVWGGILPYKLPFTLGHENAGWVEEVGSGVDGLK 80 (340)
T ss_pred CeeeEeccCCCCceEEeCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCcccccCCCCeecccceeEEEEEeCCCCCcCc
Confidence 68999998877799999999999999999999999999999998877654 235688999999999999999999999
Q ss_pred CCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCC
Q 025895 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (246)
Q Consensus 87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~ 166 (246)
+||+|+..+...|+.|.+|..+..++|.+... .|+. .+| +|++|+.++.+.++++|++
T Consensus 81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~g------------------~~~~~~~v~~~~~~~~P~~ 138 (340)
T cd05284 81 EGDPVVVHPPWGCGTCRYCRRGEENYCENARF---PGIG-TDG------------------GFAEYLLVPSRRLVKLPRG 138 (340)
T ss_pred CCCEEEEcCCCCCCCChHHhCcCcccCCCCcc---cCcc-CCC------------------cceeeEEecHHHeEECCCC
Confidence 99999999988999999999999999998775 2332 234 9999999999999999999
Q ss_pred CCchhhhhccccchhhhhhhhhh-CCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCChhHHHHHhhcCCC
Q 025895 167 APLDKVCLLGCGVPTGLGAVWNT-AKVEPGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDRGMSCVSS 241 (246)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~l~~~-~~~~~~~~VlI~Gag~~G~~ai~~a~~~G-~~~vi~~~~~~~~~~~~~~lg~~ 241 (246)
+++++++.+++.+.|||+++... ..+.++++|||+|+|.+|++++++|+.+| . +|+++++++++.+.++++|++
T Consensus 139 ls~~~aa~l~~~~~ta~~~l~~~~~~~~~~~~vlI~g~~~vg~~~~~~a~~~g~~-~v~~~~~~~~~~~~~~~~g~~ 214 (340)
T cd05284 139 LDPVEAAPLADAGLTAYHAVKKALPYLDPGSTVVVIGVGGLGHIAVQILRALTPA-TVIAVDRSEEALKLAERLGAD 214 (340)
T ss_pred CCHHHhhhhcchHHHHHHHHHHhcccCCCCCEEEEEcCcHHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHhCCc
Confidence 99999999999999999987665 46888999999999889999999999999 6 899999999999999999976
No 38
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=100.00 E-value=3.5e-31 Score=235.15 Aligned_cols=229 Identities=46% Similarity=0.812 Sum_probs=191.1
Q ss_pred eeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCCCC
Q 025895 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD 89 (246)
Q Consensus 10 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~Gd 89 (246)
|||+++..++.+++++++|.|.+++++|+||+.++++|+.|...+.+.++ ..+|.++|+|++|+|+++|+++..+++||
T Consensus 1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~i~v~~~~i~~~d~~~~~g~~~-~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd 79 (363)
T cd08279 1 MRAAVLHEVGKPLEIEEVELDDPGPGEVLVRIAAAGLCHSDLHVVTGDLP-APLPAVLGHEGAGVVEEVGPGVTGVKPGD 79 (363)
T ss_pred CeEEEEecCCCCceEEEeeCCCCCCCeEEEEEEEeecCcHHHHHhcCCCC-CCCCccccccceEEEEEeCCCccccCCCC
Confidence 79999999888899999999999999999999999999999998888665 35678999999999999999999999999
Q ss_pred EEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCCc
Q 025895 90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL 169 (246)
Q Consensus 90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~ 169 (246)
+|+..+..+|++|.+|..+..+.|.+.... -.|.. .++...+.--|...+.....|+|++|+.++.+.++++|+++++
T Consensus 80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~ 157 (363)
T cd08279 80 HVVLSWIPACGTCRYCSRGQPNLCDLGAGI-LGGQL-PDGTRRFTADGEPVGAMCGLGTFAEYTVVPEASVVKIDDDIPL 157 (363)
T ss_pred EEEECCCCCCCCChhhcCCCcccCcccccc-ccccc-CCCcccccccCccccccccCccceeeEEeccccEEECCCCCCh
Confidence 999999999999999999999999864210 00000 0000000001111111234569999999999999999999999
Q ss_pred hhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895 170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS 241 (246)
Q Consensus 170 ~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~ 241 (246)
++++.+++.+.++|.++.....+.++++|||+|+|.+|++++++|+.+|+.+|+++++++++.+.++++|++
T Consensus 158 ~~aa~~~~~~~ta~~~~~~~~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~~g~~ 229 (363)
T cd08279 158 DRAALLGCGVTTGVGAVVNTARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARRFGAT 229 (363)
T ss_pred HHeehhcchhHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHhCCe
Confidence 999999999999999887888899999999998899999999999999995599999999999999888875
No 39
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=100.00 E-value=2.3e-31 Score=234.97 Aligned_cols=210 Identities=25% Similarity=0.421 Sum_probs=183.1
Q ss_pred eeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCC---------CCCCcccccceEEEEEEcCC
Q 025895 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE---------GLFPCILGHEAAGIVESVGE 80 (246)
Q Consensus 10 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~---------~~~p~v~G~e~vG~V~~vG~ 80 (246)
|||++++++++ ++++++|.|++.+++|+||+.+++||+.|+..+.+.... ..+|.++|||++|+|+++|+
T Consensus 1 mka~~~~~~~~-~~~~~~~~p~~~~~~v~V~v~a~~i~~~d~~~~~g~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~ 79 (350)
T cd08256 1 MRAVVCHGPQD-YRLEEVPVPRPGPGEILVKVEACGICAGDIKCYHGAPSFWGDENQPPYVKPPMIPGHEFVGRVVELGE 79 (350)
T ss_pred CeeEEEecCCc-eEEEECCCCCCCCCeEEEEEEEEEEcccchhhhcCCCccccccccCccCCCCcccCcceeEEEEEeCC
Confidence 68999998876 999999999999999999999999999999988775311 14677899999999999999
Q ss_pred CCC--ccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecC
Q 025895 81 GVT--EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV 158 (246)
Q Consensus 81 ~~~--~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 158 (246)
+++ .|++||+|+..+..+|+.|.+|..++.++|..... .|+.. ...|+|++|+.++.+
T Consensus 80 ~v~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~-----------------~~~g~~~~~~~~~~~ 139 (350)
T cd08256 80 GAEERGVKVGDRVISEQIVPCWNCRFCNRGQYWMCQKHDL---YGFQN-----------------NVNGGMAEYMRFPKE 139 (350)
T ss_pred CcccCCCCCCCEEEECCcCCCCCChHHhCcCcccCcCccc---eeecc-----------------CCCCcceeeEEcccc
Confidence 998 89999999999999999999999999999986432 22210 012499999999987
Q ss_pred -ceEEcCCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895 159 -SVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS 237 (246)
Q Consensus 159 -~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~ 237 (246)
.++++|+++++++++.+ .++.++|.++ +..+++++++|+|.|+|.+|++++++|+.+|+..+++++++++|.+++.+
T Consensus 140 ~~~~~lP~~~~~~~aa~~-~~~~ta~~a~-~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~ 217 (350)
T cd08256 140 AIVHKVPDDIPPEDAILI-EPLACALHAV-DRANIKFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERLALARK 217 (350)
T ss_pred cceEECCCCCCHHHHhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCHHHHHHHHH
Confidence 57899999999999888 7889999986 77889999999997789999999999999998678899999999999999
Q ss_pred cCCCc
Q 025895 238 CVSSS 242 (246)
Q Consensus 238 lg~~~ 242 (246)
+|++.
T Consensus 218 ~g~~~ 222 (350)
T cd08256 218 FGADV 222 (350)
T ss_pred cCCcE
Confidence 99863
No 40
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=100.00 E-value=5.3e-31 Score=231.99 Aligned_cols=209 Identities=33% Similarity=0.567 Sum_probs=188.6
Q ss_pred eeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCCCC
Q 025895 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD 89 (246)
Q Consensus 10 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~Gd 89 (246)
|||+++.+++.++++++.|.|.+.+++|+||+.++++|+.|+..+.+..+...+|.++|+|++|+|+++|+++..+++||
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~~G~~~~~~~~Gd 80 (345)
T cd08260 1 MRAAVYEEFGEPLEIREVPDPEPPPDGVVVEVEACGVCRSDWHGWQGHDPDVTLPHVPGHEFAGVVVEVGEDVSRWRVGD 80 (345)
T ss_pred CeeEEEecCCCCcEEEEccCCCCCCCeEEEEEEEeeccHHHHHHhcCCCCCCCCCeeeccceeEEEEEECCCCccCCCCC
Confidence 79999999888899999999999999999999999999999999888766556688999999999999999999999999
Q ss_pred EEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecC--ceEEcCCCC
Q 025895 90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV--SVAKIDPQA 167 (246)
Q Consensus 90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~ip~~~ 167 (246)
+|+..+...|++|.+|..|..+.|.++.. .|+. .+| +|++|+.++.. .++++|+++
T Consensus 81 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~g------------------~~~~~~~v~~~~~~~~~iP~~~ 138 (345)
T cd08260 81 RVTVPFVLGCGTCPYCRAGDSNVCEHQVQ---PGFT-HPG------------------SFAEYVAVPRADVNLVRLPDDV 138 (345)
T ss_pred EEEECCCCCCCCCccccCcCcccCCCCcc---cccC-CCC------------------cceeEEEcccccCceEECCCCC
Confidence 99887778899999999999999998642 2222 233 89999999974 899999999
Q ss_pred CchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895 168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS 241 (246)
Q Consensus 168 ~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~ 241 (246)
++++++.+.+...+||+++....++.++++|+|+|+|.+|++++++|+.+|+ +|+++++++++.+.++++|++
T Consensus 139 ~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlV~g~g~vg~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~~g~~ 211 (345)
T cd08260 139 DFVTAAGLGCRFATAFRALVHQARVKPGEWVAVHGCGGVGLSAVMIASALGA-RVIAVDIDDDKLELARELGAV 211 (345)
T ss_pred CHHHhhhhccchHHHHHHHHHccCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHhCCC
Confidence 9999999999999999987777889999999999999999999999999999 899999999999999999986
No 41
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=100.00 E-value=2.5e-31 Score=238.43 Aligned_cols=214 Identities=21% Similarity=0.205 Sum_probs=183.3
Q ss_pred cccceeeeEeec--CCC---CeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCC----------CCCCcccccc
Q 025895 6 QVITCKAAVAWE--PNK---PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE----------GLFPCILGHE 70 (246)
Q Consensus 6 ~~~~~ka~~~~~--~~~---~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~----------~~~p~v~G~e 70 (246)
.+.+|||+++.. ++. .++++++|.|.++++||+||+.+++||++|++.+.+.... ...+.++|||
T Consensus 9 ~~~~~~a~~~~~~~~g~~~~~~~~~~~~~p~l~~~evlI~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~G~e 88 (393)
T cd08246 9 VPEKMYAFAIRPERYGDPAQAIQLEDVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAARQRRGRDEPYHIGGSD 88 (393)
T ss_pred CchhhhheeeecccCCCcccceEEeecCCCCCCCCEEEEEEEEEeeccchhhhhcCCCccccccccccCCCCCccccccc
Confidence 357899998863 232 3789999999999999999999999999999887664210 1123589999
Q ss_pred eEEEEEEcCCCCCccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCccee
Q 025895 71 AAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFS 150 (246)
Q Consensus 71 ~vG~V~~vG~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~ 150 (246)
++|+|+++|++++.+++||+|+..+...|+.|..|..+..++|..... .|+...+ |+|+
T Consensus 89 ~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~---~g~~~~~------------------g~~a 147 (393)
T cd08246 89 ASGIVWAVGEGVKNWKVGDEVVVHCSVWDGNDPERAGGDPMFDPSQRI---WGYETNY------------------GSFA 147 (393)
T ss_pred eEEEEEEeCCCCCcCCCCCEEEEeccccccCccccccccccccccccc---ccccCCC------------------Ccce
Confidence 999999999999999999999999999999999999999999986543 2322123 4999
Q ss_pred eeEEeecCceEEcCCCCCchhhhhccccchhhhhhhhhh--CCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcC
Q 025895 151 QYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNT--AKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI 227 (246)
Q Consensus 151 ~~~~~~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~--~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~ 227 (246)
+|+.++...++++|+++++++++.+.+++.|||+++... .+++++++|+|+|+ |.+|++++++|+.+|+ +++++++
T Consensus 148 ~y~~v~~~~l~~iP~~l~~~~aa~l~~~~~tA~~al~~~~~~~~~~g~~vlV~ga~g~iG~a~~~lak~~G~-~vv~~~~ 226 (393)
T cd08246 148 QFALVQATQLMPKPKHLSWEEAAAYMLVGATAYRMLFGWNPNTVKPGDNVLIWGASGGLGSMAIQLARAAGA-NPVAVVS 226 (393)
T ss_pred eEEEechHHeEECCCCCCHHHHhhhcccHHHHHHHHhhcccccCCCCCEEEEECCCcHHHHHHHHHHHHcCC-eEEEEeC
Confidence 999999999999999999999999999999999987554 67899999999997 9999999999999999 7888899
Q ss_pred ChhHHHHHhhcCCC
Q 025895 228 DPKKFDRGMSCVSS 241 (246)
Q Consensus 228 ~~~~~~~~~~lg~~ 241 (246)
+++|++.++++|++
T Consensus 227 s~~~~~~~~~~G~~ 240 (393)
T cd08246 227 SEEKAEYCRALGAE 240 (393)
T ss_pred CHHHHHHHHHcCCC
Confidence 99999999999976
No 42
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=99.98 E-value=8.2e-31 Score=230.78 Aligned_cols=210 Identities=30% Similarity=0.440 Sum_probs=186.8
Q ss_pred eeeeEeecCCCCeEEEEeecCCC-CCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCCC
Q 025895 10 CKAAVAWEPNKPLVIEDVQVAPP-QAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG 88 (246)
Q Consensus 10 ~ka~~~~~~~~~~~~~e~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~G 88 (246)
|||+++.++++ ++++++|.|+| .++||+||+.++++|+.|+..+.+.+....+|.++|||++|+|+++|+++..+++|
T Consensus 1 m~a~~~~~~~~-~~~~~~~~p~~~~~~ev~v~v~a~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~~G 79 (345)
T cd08286 1 MKALVYHGPGK-ISWEDRPKPTIQEPTDAIVKMLKTTICGTDLHILKGDVPTVTPGRILGHEGVGVVEEVGSAVTNFKVG 79 (345)
T ss_pred CceEEEecCCc-eeEEecCCCCCCCCCeEEEEEEEeeecchhhHHHcCCCCCCCCCceecccceEEEEEeccCccccCCC
Confidence 68999998887 99999999996 89999999999999999999998876554568899999999999999999999999
Q ss_pred CEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecC--ceEEcCCC
Q 025895 89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV--SVAKIDPQ 166 (246)
Q Consensus 89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~ip~~ 166 (246)
|+|+..+...|+.|.+|..+..+.|....+. .|.. .+| +|++|+.++.. .++++|++
T Consensus 80 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~g------------------~~~~~~~v~~~~~~~~~lp~~ 138 (345)
T cd08286 80 DRVLISCISSCGTCGYCRKGLYSHCESGGWI--LGNL-IDG------------------TQAEYVRIPHADNSLYKLPEG 138 (345)
T ss_pred CEEEECCcCCCCCChHHHCcCcccCCCcccc--cccc-cCC------------------eeeeEEEcccccCceEECCCC
Confidence 9999998889999999999999999876442 1211 233 89999999987 89999999
Q ss_pred CCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS 241 (246)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~ 241 (246)
++..+++.+.+.+.+||.++....++.++++|||.|+|.+|++++|+|+.+|+.++++++++++|.+.++++|++
T Consensus 139 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~ 213 (345)
T cd08286 139 VDEEAAVMLSDILPTGYECGVLNGKVKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGAT 213 (345)
T ss_pred CCHHHhhhccchhHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCC
Confidence 999999999999999998766778899999999998899999999999999944899999999999999999986
No 43
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=99.98 E-value=5.2e-31 Score=230.81 Aligned_cols=207 Identities=31% Similarity=0.464 Sum_probs=185.6
Q ss_pred eeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCCCC
Q 025895 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD 89 (246)
Q Consensus 10 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~Gd 89 (246)
|||+++.+++++++++++|.|.+++++++||+.++++|+.|+..+.+..+..++|.++|||++|+|+++|+++..+++||
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~v~V~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~~G~ 80 (334)
T PRK13771 1 MKAVILPGFKQGYRIEEVPDPKPGKDEVVIKVNYAGLCYRDLLQLQGFYPRMKYPVILGHEVVGTVEEVGENVKGFKPGD 80 (334)
T ss_pred CeeEEEcCCCCCcEEEeCCCCCCCCCeEEEEEEEEeechhhHHHhcCCCCCCCCCeeccccceEEEEEeCCCCccCCCCC
Confidence 78999999998899999999999999999999999999999998888765556688999999999999999998899999
Q ss_pred EEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCCc
Q 025895 90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL 169 (246)
Q Consensus 90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~ 169 (246)
+|+..+..+|+.|.+|..+..+.|..... .|.. .+ |+|++|+.++.+.++++|+++++
T Consensus 81 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~------------------g~~~~~~~~~~~~~~~lp~~~~~ 138 (334)
T PRK13771 81 RVASLLYAPDGTCEYCRSGEEAYCKNRLG---YGEE-LD------------------GFFAEYAKVKVTSLVKVPPNVSD 138 (334)
T ss_pred EEEECCCCCCcCChhhcCCCcccCccccc---cccc-cC------------------ceeeeeeecchhceEECCCCCCH
Confidence 99999888999999999999999987643 2211 23 38999999999999999999999
Q ss_pred hhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895 170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS 241 (246)
Q Consensus 170 ~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~ 241 (246)
.+++.+.+.+.++|+++... .+.++++|+|+|+ |.+|++++++++.+|+ +++++++++++++.++++ ++
T Consensus 139 ~~~a~l~~~~~~a~~~~~~~-~~~~~~~vlI~g~~g~~g~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~-~~ 208 (334)
T PRK13771 139 EGAVIVPCVTGMVYRGLRRA-GVKKGETVLVTGAGGGVGIHAIQVAKALGA-KVIAVTSSESKAKIVSKY-AD 208 (334)
T ss_pred HHhhcccchHHHHHHHHHhc-CCCCCCEEEEECCCccHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHH-HH
Confidence 99999999999999987555 8899999999998 9999999999999999 899999999999888777 44
No 44
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=99.98 E-value=8.1e-31 Score=231.36 Aligned_cols=210 Identities=29% Similarity=0.471 Sum_probs=186.9
Q ss_pred eeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCC------------CCCCCcccccceEEEEEE
Q 025895 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP------------EGLFPCILGHEAAGIVES 77 (246)
Q Consensus 10 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~------------~~~~p~v~G~e~vG~V~~ 77 (246)
|||+++..++.++++++.|.|+++++||+||+.++++|+.|+..+.+.++ ..++|.++|||++|+|++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~p~~~~~ev~V~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~ 80 (350)
T cd08240 1 MKAAAVVEPGKPLEEVEIDTPKPPGTEVLVKVTACGVCHSDLHIWDGGYDLGGGKTMSLDDRGVKLPLVLGHEIVGEVVA 80 (350)
T ss_pred CeeEEeccCCCCceEEecCCCCCCCCeEEEEEEEEecCchhHHHHcCCCCccccccccccccCCCCCcccccceeEEEEe
Confidence 79999999888899999999999999999999999999999998877543 124567899999999999
Q ss_pred cCCCCCccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeec
Q 025895 78 VGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHD 157 (246)
Q Consensus 78 vG~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 157 (246)
+|++++++++||+|+..+...|++|.+|..+.++.|.+... .|.. . .|+|++|+.++.
T Consensus 81 vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~------------------~g~~~~~~~~~~ 138 (350)
T cd08240 81 VGPDAADVKVGDKVLVYPWIGCGECPVCLAGDENLCAKGRA---LGIF-Q------------------DGGYAEYVIVPH 138 (350)
T ss_pred eCCCCCCCCCCCEEEECCcCCCCCChHHHCcCcccCCCCCc---eeee-c------------------cCcceeeEEecH
Confidence 99999999999999999999999999999999999987532 1211 2 248999999999
Q ss_pred CceEEcCCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895 158 VSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS 237 (246)
Q Consensus 158 ~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~ 237 (246)
+.++++|+++++.+++.+.+.+.+||+++......+++++|+|+|+|.+|++++|+|+.+|++.|++++++++|.+.+++
T Consensus 139 ~~~~~~p~~~s~~~aa~l~~~~~tA~~~~~~~~~~~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~ 218 (350)
T cd08240 139 SRYLVDPGGLDPALAATLACSGLTAYSAVKKLMPLVADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKA 218 (350)
T ss_pred HHeeeCCCCCCHHHeehhhchhhhHHHHHHhcccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 99999999999999999999999999988776667789999999889999999999999999778999999999999999
Q ss_pred cCCC
Q 025895 238 CVSS 241 (246)
Q Consensus 238 lg~~ 241 (246)
+|++
T Consensus 219 ~g~~ 222 (350)
T cd08240 219 AGAD 222 (350)
T ss_pred hCCc
Confidence 9976
No 45
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=99.98 E-value=1.1e-30 Score=229.55 Aligned_cols=211 Identities=30% Similarity=0.455 Sum_probs=182.6
Q ss_pred eeeeEeecCCCCeEEEEeecCCCC-CCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCCC
Q 025895 10 CKAAVAWEPNKPLVIEDVQVAPPQ-AGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG 88 (246)
Q Consensus 10 ~ka~~~~~~~~~~~~~e~~~p~~~-~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~G 88 (246)
|||+++.+++. ++++++|.|.|. +++|+||+.++++|+.|.....+.++ ..+|.++|+|++|+|+++|++++++++|
T Consensus 1 ~~a~~~~~~~~-~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~-~~~~~~~g~e~~G~V~~vG~~v~~~~~G 78 (344)
T cd08284 1 MKAVVFKGPGD-VRVEEVPIPQIQDPTDAIVKVTAAAICGSDLHIYRGHIP-STPGFVLGHEFVGEVVEVGPEVRTLKVG 78 (344)
T ss_pred CeeEEEecCCC-ceEEeccCCCCCCCCeEEEEEEEeeccccchhhhcCCCC-CCCCcccccceEEEEEeeCCCccccCCC
Confidence 68999988765 999999999985 99999999999999999988877654 2457889999999999999999999999
Q ss_pred CEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecC--ceEEcCCC
Q 025895 89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV--SVAKIDPQ 166 (246)
Q Consensus 89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~ip~~ 166 (246)
|+|+..+...|+.|.+|..+..++|.+....+..+.. ...|+|++|+.++.+ .++++|++
T Consensus 79 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~g~~~~~~~v~~~~~~~~~~p~~ 140 (344)
T cd08284 79 DRVVSPFTIACGECFYCRRGQSGRCAKGGLFGYAGSP------------------NLDGAQAEYVRVPFADGTLLKLPDG 140 (344)
T ss_pred CEEEEcccCCCCCChHHhCcCcccCCCCccccccccC------------------CCCCceeEEEEcccccCceEECCCC
Confidence 9999998899999999999999999875431110111 113489999999864 99999999
Q ss_pred CCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS 241 (246)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~ 241 (246)
+++++++.+++.+.|||+++. ...+.++++|+|+|+|.+|++++++|+.+|+.++++++++++|.+.++++|++
T Consensus 141 l~~~~a~~l~~~~~ta~~~~~-~~~~~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~ 214 (344)
T cd08284 141 LSDEAALLLGDILPTGYFGAK-RAQVRPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAALGAE 214 (344)
T ss_pred CCHHHhhhhcCchHHHHhhhH-hcCCccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHhCCe
Confidence 999999999999999999874 47888999999998899999999999999975799998999999999999864
No 46
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=99.98 E-value=1.4e-30 Score=232.24 Aligned_cols=217 Identities=30% Similarity=0.426 Sum_probs=182.8
Q ss_pred eeeeEeecCCCCeEEEEeecCCC-CCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCCC
Q 025895 10 CKAAVAWEPNKPLVIEDVQVAPP-QAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG 88 (246)
Q Consensus 10 ~ka~~~~~~~~~~~~~e~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~G 88 (246)
||++++.+++. ++++++|.|.+ +++||+||+++++||+.|+..+.+..+ ..+|.++|||++|+|+++|+++..+++|
T Consensus 1 m~~~~~~~~~~-~~~~~~~~p~~~~~~evlv~v~a~~i~~~D~~~~~g~~~-~~~p~~~g~e~~G~V~~vG~~v~~~~~G 78 (375)
T cd08282 1 MKAVVYGGPGN-VAVEDVPDPKIEHPTDAIVRITTTAICGSDLHMYRGRTG-AEPGLVLGHEAMGEVEEVGSAVESLKVG 78 (375)
T ss_pred CceEEEecCCc-eeEEeCCCCCCCCCCeEEEEEEEEeeCHHHHHHHcCCCC-CCCCceeccccEEEEEEeCCCCCcCCCC
Confidence 68999988875 99999999996 899999999999999999999888765 3468899999999999999999999999
Q ss_pred CEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecC--ceEEcCCC
Q 025895 89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV--SVAKIDPQ 166 (246)
Q Consensus 89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~ip~~ 166 (246)
|+|+..+..+|+.|..|..+..+.|.+..+.. ++ .+++..+ .....|+|++|+.+|.. .++++|++
T Consensus 79 d~V~~~~~~~~g~~~~c~~~~~~~~~~~~~~~-------~~-~~~~~~~----~~~~~g~~a~y~~v~~~~~~~~~lP~~ 146 (375)
T cd08282 79 DRVVVPFNVACGRCRNCKRGLTGVCLTVNPGR-------AG-GAYGYVD----MGPYGGGQAEYLRVPYADFNLLKLPDR 146 (375)
T ss_pred CEEEEeCCCCCCCCHHHHCcCcccCCCCCccc-------cc-ccccccc----cCCCCCeeeeEEEeecccCcEEECCCC
Confidence 99999999999999999999999998643210 00 0000000 00113589999999976 89999999
Q ss_pred CCch---hhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895 167 APLD---KVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS 241 (246)
Q Consensus 167 ~~~~---~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~ 241 (246)
++++ +++.+...+.++|+++ ...++.++++|+|.|+|.+|++++|+|+++|+..|++++++++|++.++++|+.
T Consensus 147 ~~~~~~~~~a~~~~~~~ta~~a~-~~~~~~~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~~~g~~ 223 (375)
T cd08282 147 DGAKEKDDYLMLSDIFPTGWHGL-ELAGVQPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAESIGAI 223 (375)
T ss_pred CChhhhhheeeecchHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCe
Confidence 9998 5677778889999987 778899999999998899999999999999986788899999999999999974
No 47
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=99.98 E-value=2.3e-31 Score=217.36 Aligned_cols=191 Identities=29% Similarity=0.328 Sum_probs=176.3
Q ss_pred CcccceeeeEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCC
Q 025895 5 GQVITCKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGV 82 (246)
Q Consensus 5 ~~~~~~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~ 82 (246)
.+++..|-+++++.|.+ +++++.|.|+|.++|++||-.|+|+|..|..+..|.+...+.|+++|-|++|+|+++|+++
T Consensus 4 ~~p~~~k~i~v~e~Ggydvlk~ed~pv~~papgel~iknka~GlNfid~y~RkGlY~~~plPytpGmEaaGvVvAvG~gv 83 (336)
T KOG1197|consen 4 ASPPLLKCIVVTEFGGYDVLKLEDRPVPPPAPGELTIKNKACGLNFIDLYFRKGLYDPAPLPYTPGMEAAGVVVAVGEGV 83 (336)
T ss_pred CCCchheEEEEeccCCcceEEEeeecCCCCCCCceEEeehhcCccHHHHHHhccccCCCCCCcCCCcccceEEEEecCCc
Confidence 45677888899888777 8899999999999999999999999999999999999877899999999999999999999
Q ss_pred CccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEE
Q 025895 83 TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAK 162 (246)
Q Consensus 83 ~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 162 (246)
+++++||||.... + .|.|+|+..+|...+++
T Consensus 84 tdrkvGDrVayl~-------------------------------~------------------~g~yaee~~vP~~kv~~ 114 (336)
T KOG1197|consen 84 TDRKVGDRVAYLN-------------------------------P------------------FGAYAEEVTVPSVKVFK 114 (336)
T ss_pred cccccccEEEEec-------------------------------c------------------chhhheeccccceeecc
Confidence 9999999997432 1 34899999999999999
Q ss_pred cCCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895 163 IDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS 241 (246)
Q Consensus 163 ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~ 241 (246)
+|+.+++..|+++.+...|||.-+++..++++|++||++.+ |++|+++.|+++..|+ .+|++.++.+|.+.+++-|+.
T Consensus 115 vpe~i~~k~aaa~llq~lTAy~ll~e~y~vkpGhtVlvhaAAGGVGlll~Ql~ra~~a-~tI~~asTaeK~~~akenG~~ 193 (336)
T KOG1197|consen 115 VPEAITLKEAAALLLQGLTAYMLLFEAYNVKPGHTVLVHAAAGGVGLLLCQLLRAVGA-HTIATASTAEKHEIAKENGAE 193 (336)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccHHHHHHHHHHhcCc-EEEEEeccHHHHHHHHhcCCc
Confidence 99999999999999999999998999999999999999966 9999999999999999 999999999999999999999
Q ss_pred --cccc
Q 025895 242 --SKYH 245 (246)
Q Consensus 242 --~~~~ 245 (246)
++|+
T Consensus 194 h~I~y~ 199 (336)
T KOG1197|consen 194 HPIDYS 199 (336)
T ss_pred ceeecc
Confidence 6554
No 48
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=99.98 E-value=1.7e-30 Score=226.56 Aligned_cols=208 Identities=39% Similarity=0.626 Sum_probs=186.2
Q ss_pred eeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCCCC
Q 025895 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD 89 (246)
Q Consensus 10 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~Gd 89 (246)
|||+++..+++++.++++|.|.+.+++|+||++++++|+.|+..+.+..+....|.++|||++|+|+++|++++.+++||
T Consensus 1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd 80 (332)
T cd08259 1 MKAAILHKPNKPLQIEEVPDPEPGPGEVLIKVKAAGVCYRDLLFWKGFFPRGKYPLILGHEIVGTVEEVGEGVERFKPGD 80 (332)
T ss_pred CeEEEEecCCCceEEEEccCCCCCCCeEEEEEEEEecchhhhHHhcCCCCCCCCCeeccccceEEEEEECCCCccCCCCC
Confidence 68999988666699999999999999999999999999999999888766556688999999999999999999999999
Q ss_pred EEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCCc
Q 025895 90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL 169 (246)
Q Consensus 90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~ 169 (246)
+|+..+...|++|.+|..+..+.|.+... .|.. .. |+|++|+.++...++++|+++++
T Consensus 81 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~------------------g~~~~~~~v~~~~~~~ip~~~~~ 138 (332)
T cd08259 81 RVILYYYIPCGKCEYCLSGEENLCRNRAE---YGEE-VD------------------GGFAEYVKVPERSLVKLPDNVSD 138 (332)
T ss_pred EEEECCCCCCcCChhhhCCCcccCCCccc---cccc-cC------------------CeeeeEEEechhheEECCCCCCH
Confidence 99999988999999999999999987522 3322 23 38999999999999999999999
Q ss_pred hhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895 170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS 241 (246)
Q Consensus 170 ~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~ 241 (246)
++++.+++++.++|+++.. ..+.++++++|+|+ |.+|++++++++..|+ +++++.+++++.+.++++|.+
T Consensus 139 ~~~~~~~~~~~ta~~~l~~-~~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~~~~ 209 (332)
T cd08259 139 ESAALAACVVGTAVHALKR-AGVKKGDTVLVTGAGGGVGIHAIQLAKALGA-RVIAVTRSPEKLKILKELGAD 209 (332)
T ss_pred HHHhhhccHHHHHHHHHHH-hCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHcCCc
Confidence 9999999999999998766 88899999999998 9999999999999999 899998999998888888765
No 49
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=99.97 E-value=1.8e-30 Score=227.83 Aligned_cols=207 Identities=29% Similarity=0.480 Sum_probs=183.4
Q ss_pred eeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCCCC
Q 025895 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD 89 (246)
Q Consensus 10 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~Gd 89 (246)
||++++.++++...+++.|.|.++++||+||++++++|++|...+.+..+. ..|.++|||++|+|+++|+++..|++||
T Consensus 1 mka~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~d~~~~~g~~~~-~~~~~~g~e~~G~V~~~G~~v~~~~~Gd 79 (338)
T PRK09422 1 MKAAVVNKDHTGDVVVEKTLRPLKHGEALVKMEYCGVCHTDLHVANGDFGD-KTGRILGHEGIGIVKEVGPGVTSLKVGD 79 (338)
T ss_pred CeEEEecCCCCCceEEEecCCCCCCCeEEEEEEEEeechhHHHHHcCCCCC-CCCccCCcccceEEEEECCCCccCCCCC
Confidence 799999998875449999999999999999999999999999988776543 3467899999999999999999999999
Q ss_pred EEEeeC-CCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCC
Q 025895 90 HVIPCY-QAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP 168 (246)
Q Consensus 90 ~V~~~~-~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~ 168 (246)
+|++.+ ..+|+.|.+|..+..+.|.+... .|.. .+| +|++|+.++.+.++++|++++
T Consensus 80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~g------------------~~~~~~~v~~~~~~~~p~~~~ 137 (338)
T PRK09422 80 RVSIAWFFEGCGHCEYCTTGRETLCRSVKN---AGYT-VDG------------------GMAEQCIVTADYAVKVPEGLD 137 (338)
T ss_pred EEEEccCCCCCCCChhhcCCCcccCCCccc---cCcc-ccC------------------cceeEEEEchHHeEeCCCCCC
Confidence 998765 46899999999999999987542 2322 234 999999999999999999999
Q ss_pred chhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHH-cCCCeEEEEcCChhHHHHHhhcCCC
Q 025895 169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKA-AGASRVIGIDIDPKKFDRGMSCVSS 241 (246)
Q Consensus 169 ~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~-~G~~~vi~~~~~~~~~~~~~~lg~~ 241 (246)
+.+++.+++...|+|+++ ....++++++|||+|+|++|++++++|+. +|+ +|+++++++++++.++++|++
T Consensus 138 ~~~aa~l~~~~~ta~~~~-~~~~~~~g~~vlV~g~g~vG~~~~~la~~~~g~-~v~~~~~~~~~~~~~~~~g~~ 209 (338)
T PRK09422 138 PAQASSITCAGVTTYKAI-KVSGIKPGQWIAIYGAGGLGNLALQYAKNVFNA-KVIAVDINDDKLALAKEVGAD 209 (338)
T ss_pred HHHeehhhcchhHHHHHH-HhcCCCCCCEEEEECCcHHHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHcCCc
Confidence 999999999999999986 77889999999999999999999999998 599 899999999999999999986
No 50
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=99.97 E-value=2.6e-30 Score=232.31 Aligned_cols=214 Identities=22% Similarity=0.292 Sum_probs=182.3
Q ss_pred cccceeeeEeec--CCCC---eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCC----------CCCCC-ccccc
Q 025895 6 QVITCKAAVAWE--PNKP---LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP----------EGLFP-CILGH 69 (246)
Q Consensus 6 ~~~~~ka~~~~~--~~~~---~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~----------~~~~p-~v~G~ 69 (246)
.+.+|||+++.. +++| ++++++|.|.+++++|+||+.++++|++|.+...+... ....| .++||
T Consensus 4 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~p~l~~~evlV~v~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~G~ 83 (398)
T TIGR01751 4 VPETMYAFAIREERDGDPRQAIQLEVVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAFLRKYGRDDLPFHIIGS 83 (398)
T ss_pred cchhhhheEEecccCCCcccceEEeecCCCCCCCCeEEEEEEEEecCchhhhhhcCCccchhhhhcccCCCCCCceeccc
Confidence 457799999965 4543 99999999999999999999999999999876655321 00223 37999
Q ss_pred ceEEEEEEcCCCCCccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcce
Q 025895 70 EAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTF 149 (246)
Q Consensus 70 e~vG~V~~vG~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~ 149 (246)
|++|+|+++|+++..+++||+|+..+...|++|.+|..+....|...+. .|....+ |+|
T Consensus 84 e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~------------------g~~ 142 (398)
T TIGR01751 84 DASGVVWRVGPGVTRWKVGDEVVASCLQVDLTAPDGRVGDPMLSSEQRI---WGYETNF------------------GSF 142 (398)
T ss_pred ceEEEEEEeCCCCCCCCCCCEEEEccccccCCchhhccCcccccccccc---ccccCCC------------------ccc
Confidence 9999999999999999999999999999999999999999999976442 2221123 499
Q ss_pred eeeEEeecCceEEcCCCCCchhhhhccccchhhhhhhhh--hCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEc
Q 025895 150 SQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWN--TAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGID 226 (246)
Q Consensus 150 ~~~~~~~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~--~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~ 226 (246)
++|+.++...++++|+++++++++.+.+...++|+++.. ..++.++++|+|+|+ |.+|++++++|+++|+ ++++++
T Consensus 143 ae~~~v~~~~~~~vP~~l~~~~aa~~~~~~~ta~~al~~~~~~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~-~vi~~~ 221 (398)
T TIGR01751 143 AEFALVKDYQLMPKPKHLTWEEAACPGLTGATAYRQLVGWNPATVKPGDNVLIWGAAGGLGSYATQLARAGGG-NPVAVV 221 (398)
T ss_pred eEEEEechHHeEECCCCCCHHHHhhccchHHHHHHHHhhhhccCCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-eEEEEc
Confidence 999999999999999999999999999999999998754 467889999999998 9999999999999999 788888
Q ss_pred CChhHHHHHhhcCCC
Q 025895 227 IDPKKFDRGMSCVSS 241 (246)
Q Consensus 227 ~~~~~~~~~~~lg~~ 241 (246)
+++++.+.++++|++
T Consensus 222 ~~~~~~~~~~~~g~~ 236 (398)
T TIGR01751 222 SSPEKAEYCRELGAE 236 (398)
T ss_pred CCHHHHHHHHHcCCC
Confidence 999999999999986
No 51
>PLN02702 L-idonate 5-dehydrogenase
Probab=99.97 E-value=4.8e-30 Score=227.86 Aligned_cols=210 Identities=25% Similarity=0.381 Sum_probs=174.5
Q ss_pred ceeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCC---CCCCCcccccceEEEEEEcCCCCCcc
Q 025895 9 TCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP---EGLFPCILGHEAAGIVESVGEGVTEV 85 (246)
Q Consensus 9 ~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~---~~~~p~v~G~e~vG~V~~vG~~~~~~ 85 (246)
+++++++..+.. +++++.|.|.++++||+||++++++|++|...+.+... ...+|.++|||++|+|+++|+++.+|
T Consensus 17 ~~~~~~~~~~~~-l~~~~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~ 95 (364)
T PLN02702 17 ENMAAWLVGVNT-LKIQPFKLPPLGPHDVRVRMKAVGICGSDVHYLKTMRCADFVVKEPMVIGHECAGIIEEVGSEVKHL 95 (364)
T ss_pred ccceEEEecCCc-eEEEeccCCCCCCCeEEEEEEEEEEchhhhHHHcCCCCccccCCCCcccccceeEEEEEECCCCCCC
Confidence 344444445544 99999999999999999999999999999998876321 11357789999999999999999999
Q ss_pred CCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCC
Q 025895 86 QPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP 165 (246)
Q Consensus 86 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~ 165 (246)
++||+|+..+..+|++|.+|..|..+.|.+... .+....+ |+|++|+.++...++++|+
T Consensus 96 ~~Gd~V~~~~~~~~~~c~~c~~g~~~~c~~~~~---~~~~~~~------------------g~~~~y~~v~~~~~~~~P~ 154 (364)
T PLN02702 96 VVGDRVALEPGISCWRCNLCKEGRYNLCPEMKF---FATPPVH------------------GSLANQVVHPADLCFKLPE 154 (364)
T ss_pred CCCCEEEEcCCCCCCCCcchhCcCcccCCCccc---cCCCCCC------------------CcccceEEcchHHeEECCC
Confidence 999999999999999999999999999986432 1111112 4999999999999999999
Q ss_pred CCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895 166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS 242 (246)
Q Consensus 166 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~ 242 (246)
++++++++.. ..+.++|+++ ...++.++++|+|+|+|.+|++++++|+.+|+..+++++++++|.++++++|++.
T Consensus 155 ~l~~~~aa~~-~~~~~a~~~~-~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~ 229 (364)
T PLN02702 155 NVSLEEGAMC-EPLSVGVHAC-RRANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQLGADE 229 (364)
T ss_pred CCCHHHHhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCE
Confidence 9999888752 2344577765 6788899999999998999999999999999967899999999999999999874
No 52
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=99.97 E-value=4.4e-30 Score=228.31 Aligned_cols=230 Identities=33% Similarity=0.571 Sum_probs=190.0
Q ss_pred eeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCc---cC
Q 025895 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTE---VQ 86 (246)
Q Consensus 10 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~---~~ 86 (246)
|||+++++++.++++++.|.|.++++||+||+.++++|+.|+..+.+.++. .+|.++|||++|+|+.+|+++.+ ++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~~-~~p~~~g~e~~G~v~~vG~~~~~~~~~~ 79 (367)
T cd08263 1 MKAAVLKGPNPPLTIEEIPVPRPKEGEILIRVAACGVCHSDLHVLKGELPF-PPPFVLGHEISGEVVEVGPNVENPYGLS 79 (367)
T ss_pred CeeEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEeeeCcchHHHhcCCCCC-CCCcccccccceEEEEeCCCCCCCCcCC
Confidence 689999998777999999999999999999999999999999988876644 56789999999999999999988 99
Q ss_pred CCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccC-CcceeeccCCcceeeeEEeecCceEEcCC
Q 025895 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSIN-GKPIYHFMGTSTFSQYTVVHDVSVAKIDP 165 (246)
Q Consensus 87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~ip~ 165 (246)
+||+|+..+..+|++|.+|..+.+++|.++..+...+..-.+|++.+... +.+++ ....|+|++|+.++.+.++++|+
T Consensus 80 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~P~ 158 (367)
T cd08263 80 VGDRVVGSFIMPCGKCRYCARGKENLCEDFFAYNRLKGTLYDGTTRLFRLDGGPVY-MYSMGGLAEYAVVPATALAPLPE 158 (367)
T ss_pred CCCEEEEcCCCCCCCChHHhCcCcccCcCccccccccccccCCcccccccCCCccc-cccCCcceeEEEechhhEEECCC
Confidence 99999998888999999999999999998652111110000110000000 00000 02346999999999999999999
Q ss_pred CCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895 166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS 241 (246)
Q Consensus 166 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~ 241 (246)
++++.+++.+++.+.|||.++.....+.++++|||+|+|.+|++++++|+.+|+..+++++.++++.+.++++|++
T Consensus 159 ~is~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~~g~~ 234 (367)
T cd08263 159 SLDYTESAVLGCAGFTAYGALKHAADVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKELGAT 234 (367)
T ss_pred CCCHHHHhHhcchHHHHHHHHHhcccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCc
Confidence 9999999999999999999887777889999999998899999999999999995599999999999999888876
No 53
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=99.97 E-value=1.7e-30 Score=234.44 Aligned_cols=197 Identities=19% Similarity=0.286 Sum_probs=160.5
Q ss_pred cceeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhh-cCCCCC------CCCCcccccceEEEEEEcCC
Q 025895 8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTW-SGKDPE------GLFPCILGHEAAGIVESVGE 80 (246)
Q Consensus 8 ~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~-~~~~~~------~~~p~v~G~e~vG~V~~vG~ 80 (246)
|+||+++++++++ ++++|+|.|.|+++||+|||.++|||++|++.+ .+.... ..+|.++|||++|+|+++|+
T Consensus 1 m~~~a~~~~~~~~-l~~~e~p~P~~~~~eVlVkV~a~gic~sD~~~~~~g~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~ 79 (410)
T cd08238 1 MKTKAWRMYGKGD-LRLEKFELPEIADDEILVRVISDSLCFSTWKLALQGSDHKKVPNDLAKEPVILGHEFAGTILKVGK 79 (410)
T ss_pred CCcEEEEEEcCCc-eEEEecCCCCCCCCeEEEEEEEeccCCCCHHHHhcCCccccCcccccCCCceeccccEEEEEEeCC
Confidence 5689999999987 999999999999999999999999999999976 443211 14688999999999999999
Q ss_pred CCC-ccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecC-
Q 025895 81 GVT-EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV- 158 (246)
Q Consensus 81 ~~~-~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~- 158 (246)
+++ .|++||||++.+...|+.|..|. + .|.. .+| +|+||+.+|.+
T Consensus 80 ~v~~~~~vGdrV~~~~~~~c~~~~~c~-~-------------~g~~-~~G------------------~~aey~~v~~~~ 126 (410)
T cd08238 80 KWQGKYKPGQRFVIQPALILPDGPSCP-G-------------YSYT-YPG------------------GLATYHIIPNEV 126 (410)
T ss_pred CccCCCCCCCEEEEcCCcCCCCCCCCC-C-------------cccc-CCC------------------cceEEEEecHHh
Confidence 998 59999999999888898887772 1 1111 234 99999999986
Q ss_pred ---ceEEcCCCCCchhhhhc-cccc-hhhhhhh--------hhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcC--CCeE
Q 025895 159 ---SVAKIDPQAPLDKVCLL-GCGV-PTGLGAV--------WNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAG--ASRV 222 (246)
Q Consensus 159 ---~~~~ip~~~~~~~aa~l-~~~~-~ta~~~l--------~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G--~~~v 222 (246)
.++++|+++++++++.+ +... .+++.++ .+..+++++++|+|+|+ |++|++++|+|+.+| +.+|
T Consensus 127 ~~~~~~~lP~~l~~~~aal~epl~~~~~~~~a~~~~~~~~~~~~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~V 206 (410)
T cd08238 127 MEQDCLLIYEGDGYAEASLVEPLSCVIGAYTANYHLQPGEYRHRMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLL 206 (410)
T ss_pred ccCCeEECCCCCCHHHHhhcchHHHHHHHhhhcccccccchhhhcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceE
Confidence 68999999999988754 2111 1233322 24567899999999985 999999999999975 4579
Q ss_pred EEEcCChhHHHHHhhc
Q 025895 223 IGIDIDPKKFDRGMSC 238 (246)
Q Consensus 223 i~~~~~~~~~~~~~~l 238 (246)
++++.+++|++.++++
T Consensus 207 i~~~~~~~r~~~a~~~ 222 (410)
T cd08238 207 VVTDVNDERLARAQRL 222 (410)
T ss_pred EEEcCCHHHHHHHHHh
Confidence 9999999999999997
No 54
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=99.97 E-value=7.6e-30 Score=223.01 Aligned_cols=209 Identities=30% Similarity=0.476 Sum_probs=186.5
Q ss_pred eeeeEeecCCC----CeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCcc
Q 025895 10 CKAAVAWEPNK----PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEV 85 (246)
Q Consensus 10 ~ka~~~~~~~~----~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~ 85 (246)
||++++.++++ ++++++.+.|.++++||+||+.++++|++|...+.+..+....|.++|||++|+|+++|+++.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~irv~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~vG~~v~~~ 80 (329)
T cd08298 1 MKAMVLEKPGPIEENPLRLTEVPVPEPGPGEVLIKVEACGVCRTDLHIVEGDLPPPKLPLIPGHEIVGRVEAVGPGVTRF 80 (329)
T ss_pred CeEEEEecCCCCCCCCceEEeccCCCCCCCEEEEEEEEEeccHHHHHHHhCCCCCCCCCccccccccEEEEEECCCCCCC
Confidence 68999998884 58899999888999999999999999999999988876555668899999999999999999999
Q ss_pred CCCCEEEeeC-CCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcC
Q 025895 86 QPGDHVIPCY-QAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID 164 (246)
Q Consensus 86 ~~Gd~V~~~~-~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip 164 (246)
++||+|++.+ ...|+.|.+|..+..+.|..... .|.. .+| +|++|+.++.+.++++|
T Consensus 81 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~g------------------~~~~~~~~~~~~~~~lp 138 (329)
T cd08298 81 SVGDRVGVPWLGSTCGECRYCRSGRENLCDNARF---TGYT-VDG------------------GYAEYMVADERFAYPIP 138 (329)
T ss_pred cCCCEEEEeccCCCCCCChhHhCcChhhCCCccc---cccc-cCC------------------ceEEEEEecchhEEECC
Confidence 9999998765 36889999999999999987653 2322 233 89999999999999999
Q ss_pred CCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895 165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS 242 (246)
Q Consensus 165 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~ 242 (246)
+++++.+++.+.+++.+||+++ ...+++++++|+|+|+|.+|++++++++..|+ +|+++++++++++.++++|++.
T Consensus 139 ~~~~~~~~~~~~~~~~ta~~~~-~~~~~~~~~~vlV~g~g~vg~~~~~la~~~g~-~v~~~~~~~~~~~~~~~~g~~~ 214 (329)
T cd08298 139 EDYDDEEAAPLLCAGIIGYRAL-KLAGLKPGQRLGLYGFGASAHLALQIARYQGA-EVFAFTRSGEHQELARELGADW 214 (329)
T ss_pred CCCCHHHhhHhhhhhHHHHHHH-HhhCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEcCChHHHHHHHHhCCcE
Confidence 9999999999999999999987 88899999999999999999999999999999 8999999999999999999863
No 55
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=99.97 E-value=2.3e-30 Score=214.77 Aligned_cols=192 Identities=26% Similarity=0.330 Sum_probs=169.9
Q ss_pred CcccceeeeEeecCCCC---eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCC-CCCCcccccceEEEEEEcCC
Q 025895 5 GQVITCKAAVAWEPNKP---LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGE 80 (246)
Q Consensus 5 ~~~~~~ka~~~~~~~~~---~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~-~~~p~v~G~e~vG~V~~vG~ 80 (246)
+++...|++++.+.|+| +++++++.|+...++|+||.+|+.||++|+..+.|.|+. +++|.+=|+|++|+|+.+|+
T Consensus 15 q~~~~~kalvY~~hgdP~kVlql~~~~~p~~~~s~v~Vk~LAaPINPsDIN~IQGvYpvrP~~PAVgGnEGv~eVv~vGs 94 (354)
T KOG0025|consen 15 QMPARSKALVYSEHGDPAKVLQLKNLELPAVPGSDVLVKMLAAPINPSDINQIQGVYPVRPELPAVGGNEGVGEVVAVGS 94 (354)
T ss_pred ccccccceeeecccCCchhhheeecccCCCCCCCceeeeeeecCCChHHhhhhccccCCCCCCCcccCCcceEEEEEecC
Confidence 45577899999999998 788999999988888999999999999999999999985 57899999999999999999
Q ss_pred CCCccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCce
Q 025895 81 GVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSV 160 (246)
Q Consensus 81 ~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 160 (246)
.+..|++||+|+..+. + .|+|++|.+..++.+
T Consensus 95 ~vkgfk~Gd~VIp~~a------------------------------~------------------lGtW~t~~v~~e~~L 126 (354)
T KOG0025|consen 95 NVKGFKPGDWVIPLSA------------------------------N------------------LGTWRTEAVFSESDL 126 (354)
T ss_pred CcCccCCCCeEeecCC------------------------------C------------------CccceeeEeecccce
Confidence 9999999999986643 2 349999999999999
Q ss_pred EEcCCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHH----HH
Q 025895 161 AKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFD----RG 235 (246)
Q Consensus 161 ~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~----~~ 235 (246)
+++++.++.+.||++.++..|||+.|.+-.++.+||+|+-.|+ +.+|++.+|+|++.|+ +.|-+.|+....+ .+
T Consensus 127 i~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L~~GD~vIQNganS~VG~~ViQlaka~Gi-ktinvVRdR~~ieel~~~L 205 (354)
T KOG0025|consen 127 IKVDKDIPLASAATLSVNPCTAYRMLKDFVQLNKGDSVIQNGANSGVGQAVIQLAKALGI-KTINVVRDRPNIEELKKQL 205 (354)
T ss_pred EEcCCcCChhhhheeccCchHHHHHHHHHHhcCCCCeeeecCcccHHHHHHHHHHHHhCc-ceEEEeecCccHHHHHHHH
Confidence 9999999999999999999999999999999999999999998 9999999999999999 5555556654444 55
Q ss_pred hhcCCCcccc
Q 025895 236 MSCVSSSKYH 245 (246)
Q Consensus 236 ~~lg~~~~~~ 245 (246)
+.+||+++.+
T Consensus 206 k~lGA~~ViT 215 (354)
T KOG0025|consen 206 KSLGATEVIT 215 (354)
T ss_pred HHcCCceEec
Confidence 6799997653
No 56
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=99.97 E-value=6.8e-30 Score=224.58 Aligned_cols=215 Identities=28% Similarity=0.353 Sum_probs=184.2
Q ss_pred eeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCCCCE
Q 025895 11 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDH 90 (246)
Q Consensus 11 ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~Gd~ 90 (246)
|+++.+..+..+++++++.|.+.++||+||+.++++|+.|...+.+......+|.++|||++|+|+++|+++.+|++||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~p~~~~~evlirv~a~~i~~~d~~~~~g~~~~~~~p~~~g~e~~G~V~~vG~~v~~~~~Gd~ 80 (337)
T cd05283 1 KGYAARDASGKLEPFTFERRPLGPDDVDIKITYCGVCHSDLHTLRNEWGPTKYPLVPGHEIVGIVVAVGSKVTKFKVGDR 80 (337)
T ss_pred CceEEecCCCCceEEeccCCCCCCCeEEEEEEEecccchHHHHhcCCcCCCCCCcccCcceeeEEEEECCCCcccCCCCE
Confidence 57788887777999999999999999999999999999999998887655567889999999999999999999999999
Q ss_pred EEee-CCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCCc
Q 025895 91 VIPC-YQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL 169 (246)
Q Consensus 91 V~~~-~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~ 169 (246)
|++. ....|++|.+|..+..++|....... .| +........|+|++|+.++.+.++++|+++++
T Consensus 81 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--------------~~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~ 145 (337)
T cd05283 81 VGVGCQVDSCGTCEQCKSGEEQYCPKGVVTY-NG--------------KYPDGTITQGGYADHIVVDERFVFKIPEGLDS 145 (337)
T ss_pred EEEecCCCCCCCCccccCCchhcCcchhhcc-cc--------------cccCCCcCCCcceeEEEechhheEECCCCCCH
Confidence 9743 45689999999999999998754310 01 00000122459999999999999999999999
Q ss_pred hhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895 170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS 242 (246)
Q Consensus 170 ~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~ 242 (246)
++++.+.+...+||.++.. ..+.++++|+|.|+|.+|++++++++.+|+ +++++++++++++.++++|++.
T Consensus 146 ~~aa~l~~~~~ta~~~~~~-~~~~~g~~vlV~g~g~vG~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~ 216 (337)
T cd05283 146 AAAAPLLCAGITVYSPLKR-NGVGPGKRVGVVGIGGLGHLAVKFAKALGA-EVTAFSRSPSKKEDALKLGADE 216 (337)
T ss_pred HHhhhhhhHHHHHHHHHHh-cCCCCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHcCCcE
Confidence 9999999999999997644 568999999998889999999999999999 8999999999999999999873
No 57
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=99.97 E-value=1.1e-29 Score=221.32 Aligned_cols=202 Identities=25% Similarity=0.436 Sum_probs=174.6
Q ss_pred eeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCCCC
Q 025895 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD 89 (246)
Q Consensus 10 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~Gd 89 (246)
|||+++.++++ ++++++|.|+++++||+||+.++++|+.|...+.+.++ .|.++|||++|+|+++|++ +++||
T Consensus 1 ~~a~~~~~~~~-~~~~~~~~p~~~~~~vlV~v~a~~i~~~d~~~~~g~~~---~~~~~G~e~~G~Vv~~G~~---~~~G~ 73 (319)
T cd08242 1 MKALVLDGGLD-LRVEDLPKPEPPPGEALVRVLLAGICNTDLEIYKGYYP---FPGVPGHEFVGIVEEGPEA---ELVGK 73 (319)
T ss_pred CeeEEEeCCCc-EEEEECCCCCCCCCeEEEEEEEEEEccccHHHHcCCCC---CCCccCceEEEEEEEeCCC---CCCCC
Confidence 68999998765 99999999999999999999999999999998877653 5788999999999999988 67999
Q ss_pred EEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCCc
Q 025895 90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL 169 (246)
Q Consensus 90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~ 169 (246)
+|...+..+|+.|.+|..+....|...+. .++...+| +|++|+.++.+.++++|++++.
T Consensus 74 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g------------------~~~~~~~v~~~~~~~lP~~~~~ 132 (319)
T cd08242 74 RVVGEINIACGRCEYCRRGLYTHCPNRTV---LGIVDRDG------------------AFAEYLTLPLENLHVVPDLVPD 132 (319)
T ss_pred eEEECCCcCCCCChhhhCcCcccCCCCcc---cCccCCCC------------------ceEEEEEechHHeEECcCCCCH
Confidence 99999988999999999998888886543 22211233 8999999999999999999999
Q ss_pred hhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895 170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS 242 (246)
Q Consensus 170 ~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~ 242 (246)
++++.+ ..+.++|. +.+..+++++++|||+|+|.+|++++|+|+.+|+ +|++++.++++++.++++|++.
T Consensus 133 ~~aa~~-~~~~~~~~-~~~~~~~~~g~~vlV~g~g~vg~~~~q~a~~~G~-~vi~~~~~~~~~~~~~~~g~~~ 202 (319)
T cd08242 133 EQAVFA-EPLAAALE-ILEQVPITPGDKVAVLGDGKLGLLIAQVLALTGP-DVVLVGRHSEKLALARRLGVET 202 (319)
T ss_pred HHhhhh-hHHHHHHH-HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHcCCcE
Confidence 888764 34455665 4577889999999999889999999999999999 6999999999999999999874
No 58
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=99.97 E-value=5.9e-30 Score=222.68 Aligned_cols=184 Identities=26% Similarity=0.349 Sum_probs=150.3
Q ss_pred ceeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecc-hhhhhhhcCCCCC---CCCCcccccceEEEEEEcCCCCCc
Q 025895 9 TCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALC-HTDAYTWSGKDPE---GLFPCILGHEAAGIVESVGEGVTE 84 (246)
Q Consensus 9 ~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~-~~D~~~~~~~~~~---~~~p~v~G~e~vG~V~~vG~~~~~ 84 (246)
++|++++.+++. ++++|.|.|+|++|||+||+++++|| ++|++.+.|.++. ..+|.++|||++|+|+++|+++ +
T Consensus 1 ~~ka~~~~~~~~-l~~~e~~~p~~~~~evlVkv~~~gi~~~~D~~~~~G~~~~~~~~~~P~i~GhE~~G~V~~vG~~v-~ 78 (308)
T TIGR01202 1 KTQAIVLSGPNQ-IELREVTLTPPSPGDLVVEIWYSGISTGTEKLFWNGLMPPFPGMGYPLVPGYESVGRVVEAGPDT-G 78 (308)
T ss_pred CceEEEEeCCCe-EEEEEecCCCCCCCeEEEEEEEEeeccCchhHHhcCCCCCCCCCCCCccCcceeEEEEEEecCCC-C
Confidence 578999998876 99999999999999999999999996 7999988886543 2579999999999999999998 6
Q ss_pred cCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcC
Q 025895 85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID 164 (246)
Q Consensus 85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip 164 (246)
|++||||+... ..|..|.. | .+ |+|+||+.+|.+.++++|
T Consensus 79 ~~vGdrV~~~~----~~c~~~~~---------------~---~~------------------G~~aey~~v~~~~~~~ip 118 (308)
T TIGR01202 79 FRPGDRVFVPG----SNCYEDVR---------------G---LF------------------GGASKRLVTPASRVCRLD 118 (308)
T ss_pred CCCCCEEEEeC----cccccccc---------------c---cC------------------CcccceEEcCHHHceeCC
Confidence 99999998632 22322110 0 12 399999999999999999
Q ss_pred CCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhc
Q 025895 165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSC 238 (246)
Q Consensus 165 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~l 238 (246)
++++++. +.+. ...+||+++.. . ..++++++|+|+|++|++++|+|+++|++.|++++.+++|++.+.++
T Consensus 119 ~~~~~~~-a~~~-~~~~a~~~~~~-~-~~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~ 188 (308)
T TIGR01202 119 PALGPQG-ALLA-LAATARHAVAG-A-EVKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY 188 (308)
T ss_pred CCCCHHH-Hhhh-HHHHHHHHHHh-c-ccCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc
Confidence 9999865 4444 56889997744 3 33578999999999999999999999996688888888888877654
No 59
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=99.97 E-value=1.8e-29 Score=220.29 Aligned_cols=203 Identities=30% Similarity=0.391 Sum_probs=174.6
Q ss_pred eeeeEeecCC-CCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCCC
Q 025895 10 CKAAVAWEPN-KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG 88 (246)
Q Consensus 10 ~ka~~~~~~~-~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~G 88 (246)
||++++..++ +.+++++.+.|+++++||+||+.++++|++|...+.+. ....+|.++|||++|+|+++|+++.++++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~v~v~~~~i~~~d~~~~~~~-~~~~~~~~~g~e~~G~v~~vG~~v~~~~~G 79 (325)
T cd08264 1 MKALVFEKSGIENLKVEDVKDPKPGPGEVLIRVKMAGVNPVDYNVINAV-KVKPMPHIPGAEFAGVVEEVGDHVKGVKKG 79 (325)
T ss_pred CeeEEeccCCCCceEEEeccCCCCCCCeEEEEEEEEEechHHHHHHhCC-CCCCCCeecccceeEEEEEECCCCCCCCCC
Confidence 6899987665 45889999988899999999999999999999887642 222457789999999999999999999999
Q ss_pred CEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCC
Q 025895 89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP 168 (246)
Q Consensus 89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~ 168 (246)
|+|+..+...|+.|.+|..++.+.|.++.. .|+. . .|+|++|+.++...++++|++++
T Consensus 80 d~V~~~~~~~~~~c~~~~~~~~~~~~~~~~---~~~~-~------------------~g~~~~~~~v~~~~~~~~p~~~~ 137 (325)
T cd08264 80 DRVVVYNRVFDGTCDMCLSGNEMLCRNGGI---IGVV-S------------------NGGYAEYIVVPEKNLFKIPDSIS 137 (325)
T ss_pred CEEEECCCcCCCCChhhcCCCccccCccce---eecc-C------------------CCceeeEEEcCHHHceeCCCCCC
Confidence 999999988999999999999999997543 2221 2 24899999999999999999999
Q ss_pred chhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895 169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS 241 (246)
Q Consensus 169 ~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~ 241 (246)
+++++.+++.+.++|+++.. .+++++++|+|+|+ |.+|++++++|+.+|+ +|+++++ .+.++++|++
T Consensus 138 ~~~~~~~~~~~~~a~~~l~~-~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~-~v~~~~~----~~~~~~~g~~ 205 (325)
T cd08264 138 DELAASLPVAALTAYHALKT-AGLGPGETVVVFGASGNTGIFAVQLAKMMGA-EVIAVSR----KDWLKEFGAD 205 (325)
T ss_pred HHHhhhhhhhhHHHHHHHHh-cCCCCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeH----HHHHHHhCCC
Confidence 99999999999999998754 88999999999998 9999999999999999 7888752 3666777765
No 60
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=99.97 E-value=2.2e-29 Score=220.24 Aligned_cols=209 Identities=34% Similarity=0.517 Sum_probs=187.8
Q ss_pred eeeeEeecCCCC-eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCC-CCCCCcccccceEEEEEEcCCCCCccCC
Q 025895 10 CKAAVAWEPNKP-LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP-EGLFPCILGHEAAGIVESVGEGVTEVQP 87 (246)
Q Consensus 10 ~ka~~~~~~~~~-~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~-~~~~p~v~G~e~vG~V~~vG~~~~~~~~ 87 (246)
||++++..++++ +.+.+.|.|.+.+++|+||+.++++|+.|...+.+.+. ...+|.++|+|++|+|+.+|+++..+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~g~~~~G~v~~~G~~v~~~~~ 80 (338)
T cd08254 1 MKAWRFHKGSKGLLVLEEVPVPEPGPGEVLVKVKAAGVCHSDLHILDGGVPTLTKLPLTLGHEIAGTVVEVGAGVTNFKV 80 (338)
T ss_pred CeeEEEecCCCCceEEeccCCCCCCCCeEEEEEEEEeeccHhHHHHcCCCcccCCCCEeccccccEEEEEECCCCccCCC
Confidence 799999999998 68888999999999999999999999999999888765 3356789999999999999999999999
Q ss_pred CCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCC
Q 025895 88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA 167 (246)
Q Consensus 88 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~ 167 (246)
||+|+.++..+|+.|.+|..+..+.|..+.. .|.. .+| +|++|+.++.+.++++|+++
T Consensus 81 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~g------------------~~~~~~~~~~~~~~~lp~~~ 138 (338)
T cd08254 81 GDRVAVPAVIPCGACALCRRGRGNLCLNQGM---PGLG-IDG------------------GFAEYIVVPARALVPVPDGV 138 (338)
T ss_pred CCEEEECCCCCCCCChhhhCcCcccCCCCCc---cccc-cCC------------------cceeeEEechHHeEECCCCC
Confidence 9999999999999999999999999976543 2222 233 89999999999999999999
Q ss_pred CchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895 168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS 241 (246)
Q Consensus 168 ~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~ 241 (246)
++.+++.+.+++.+||+++.....++++++|||.|+|.+|++++++|+.+|+ +|++++.++++.+.++++|.+
T Consensus 139 ~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vli~g~g~vG~~~~~la~~~G~-~V~~~~~s~~~~~~~~~~g~~ 211 (338)
T cd08254 139 PFAQAAVATDAVLTPYHAVVRAGEVKPGETVLVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAKELGAD 211 (338)
T ss_pred CHHHhhhhcchHHHHHHHHHhccCCCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHhCCC
Confidence 9999999999999999988777889999999998889999999999999999 799999999999999988875
No 61
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=99.97 E-value=2.6e-29 Score=220.53 Aligned_cols=205 Identities=35% Similarity=0.561 Sum_probs=180.0
Q ss_pred eeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCCCC
Q 025895 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD 89 (246)
Q Consensus 10 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~Gd 89 (246)
|||+++++++. +++.++|.|.++++||+|||.++++|+.|.....+..+...+|.++|+|++|+|+++|++++.+++||
T Consensus 1 ~~a~~~~~~~~-~~~~~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~~Gd 79 (337)
T cd08261 1 MKALVCEKPGR-LEVVDIPEPVPGAGEVLVRVKRVGICGSDLHIYHGRNPFASYPRILGHELSGEVVEVGEGVAGLKVGD 79 (337)
T ss_pred CeEEEEeCCCc-eEEEECCCCCCCCCeEEEEEEEEeEcccChHHHcCCCCcCCCCcccccccEEEEEEeCCCCCCCCCCC
Confidence 68999998876 99999999999999999999999999999998887765545678999999999999999999999999
Q ss_pred EEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCCc
Q 025895 90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL 169 (246)
Q Consensus 90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~ 169 (246)
+|+..+...|+.|+.|..+..+.|..... .++. . .|+|++|+.++.+ ++++|+++++
T Consensus 80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~------------------~g~~~~~v~v~~~-~~~~p~~~~~ 136 (337)
T cd08261 80 RVVVDPYISCGECYACRKGRPNCCENLQV---LGVH-R------------------DGGFAEYIVVPAD-ALLVPEGLSL 136 (337)
T ss_pred EEEECCCCCCCCChhhhCcCcccCCCCCe---eeec-C------------------CCcceeEEEechh-eEECCCCCCH
Confidence 99998888999999999999999964321 1111 1 2389999999999 9999999999
Q ss_pred hhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895 170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS 241 (246)
Q Consensus 170 ~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~ 241 (246)
++++.+ ..+.++++++ ....+.++++|||+|+|.+|.+++|+|+.+|+ +|+++.+++++.+.++++|++
T Consensus 137 ~~aa~~-~~~~~a~~~~-~~~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~-~v~~~~~s~~~~~~~~~~g~~ 205 (337)
T cd08261 137 DQAALV-EPLAIGAHAV-RRAGVTAGDTVLVVGAGPIGLGVIQVAKARGA-RVIVVDIDDERLEFARELGAD 205 (337)
T ss_pred HHhhhh-chHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEECCCHHHHHHHHHhCCC
Confidence 998876 5677788765 77889999999999889999999999999999 899999999999999989876
No 62
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=99.97 E-value=3.5e-29 Score=218.94 Aligned_cols=207 Identities=32% Similarity=0.487 Sum_probs=183.4
Q ss_pred eeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCCCCE
Q 025895 11 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDH 90 (246)
Q Consensus 11 ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~Gd~ 90 (246)
||+++.+++..+++++.|.|.+.+++|+||+.++++|+.|...+.+......+|.++|||++|+|+++|+++.++++||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~p~~~g~e~~G~v~~~g~~~~~~~~Gd~ 80 (330)
T cd08245 1 KAAVVHAAGGPLEPEEVPVPEPGPGEVLIKIEACGVCHTDLHAAEGDWGGSKYPLVPGHEIVGEVVEVGAGVEGRKVGDR 80 (330)
T ss_pred CeEEEecCCCCceEEeccCCCCCCCeEEEEEEEEeccHHHHHHHcCCCCCCCCCcccCccceEEEEEECCCCcccccCCE
Confidence 68899999666999999999999999999999999999999988887644456789999999999999999999999999
Q ss_pred EEeeCC-CCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCCc
Q 025895 91 VIPCYQ-AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL 169 (246)
Q Consensus 91 V~~~~~-~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~ 169 (246)
|++.+. .+|++|.+|..+..+.|.+.... ++. .+ |+|++|+.++.+.++++|+++++
T Consensus 81 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~------------------g~~~~~~~v~~~~~~~~p~~~~~ 138 (330)
T cd08245 81 VGVGWLVGSCGRCEYCRRGLENLCQKAVNT---GYT-TQ------------------GGYAEYMVADAEYTVLLPDGLPL 138 (330)
T ss_pred EEEccccCCCCCChhhhCcCcccCcCcccc---Ccc-cC------------------CccccEEEEcHHHeEECCCCCCH
Confidence 988664 67999999999999999986431 211 12 38999999999999999999999
Q ss_pred hhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895 170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS 241 (246)
Q Consensus 170 ~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~ 241 (246)
.+++.+.+...++|.++.. ..+.++++|+|+|+|.+|++++++|+.+|+ +|+++++++++.+.++++|++
T Consensus 139 ~~~~~l~~~~~ta~~~l~~-~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~ 208 (330)
T cd08245 139 AQAAPLLCAGITVYSALRD-AGPRPGERVAVLGIGGLGHLAVQYARAMGF-ETVAITRSPDKRELARKLGAD 208 (330)
T ss_pred HHhhhhhhhHHHHHHHHHh-hCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhCCc
Confidence 9999999999999998744 788999999999888899999999999999 899999999999999888876
No 63
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=99.97 E-value=3e-29 Score=220.59 Aligned_cols=208 Identities=28% Similarity=0.428 Sum_probs=176.2
Q ss_pred eeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCC---CCCCCCcccccceEEEEEEcCCCCCccC
Q 025895 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD---PEGLFPCILGHEAAGIVESVGEGVTEVQ 86 (246)
Q Consensus 10 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~---~~~~~p~v~G~e~vG~V~~vG~~~~~~~ 86 (246)
||++++.++++.+++.+.|.|.|+++||+||++++++|++|..++.+.. ....+|.++|||++|+|+++|++++.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~p~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~V~~vG~~v~~~~ 80 (341)
T PRK05396 1 MKALVKLKAEPGLWLTDVPVPEPGPNDVLIKVKKTAICGTDVHIYNWDEWAQKTIPVPMVVGHEFVGEVVEVGSEVTGFK 80 (341)
T ss_pred CceEEEecCCCceEEEECCCCCCCCCeEEEEEEEEEEcccchHhhcCCCcccccCCCCcccceeeEEEEEEeCCCCCcCC
Confidence 6899999988889999999999999999999999999999998765532 1224678899999999999999999999
Q ss_pred CCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCC
Q 025895 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (246)
Q Consensus 87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~ 166 (246)
+||+|+..+..+|+.|.+|..+..++|..... .+.. . .|+|++|+.++.+.++++|++
T Consensus 81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~------------------~g~~~~~~~v~~~~~~~iP~~ 138 (341)
T PRK05396 81 VGDRVSGEGHIVCGHCRNCRAGRRHLCRNTKG---VGVN-R------------------PGAFAEYLVIPAFNVWKIPDD 138 (341)
T ss_pred CCCEEEECCCCCCCCChhhhCcChhhCCCcce---eeec-C------------------CCcceeeEEechHHeEECcCC
Confidence 99999999999999999999999999986431 2211 2 349999999999999999999
Q ss_pred CCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS 242 (246)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~ 242 (246)
+++++++.+ ..+.+++.++.. ...++++|+|.|+|.+|++++|+|+.+|+..|+++++++++.+.++++|++.
T Consensus 139 l~~~~~~~~-~~~~~~~~~~~~--~~~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~lg~~~ 211 (341)
T PRK05396 139 IPDDLAAIF-DPFGNAVHTALS--FDLVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGATR 211 (341)
T ss_pred CCHHHhHhh-hHHHHHHHHHHc--CCCCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCcE
Confidence 999888754 455666554432 3458999999988999999999999999966888889999999999999873
No 64
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=99.97 E-value=3.8e-29 Score=219.75 Aligned_cols=196 Identities=24% Similarity=0.422 Sum_probs=169.9
Q ss_pred eeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCC-----------CCCCCcccccceEEEEEEc
Q 025895 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP-----------EGLFPCILGHEAAGIVESV 78 (246)
Q Consensus 10 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~-----------~~~~p~v~G~e~vG~V~~v 78 (246)
|||+++.++ +++++++|.|++++++|+||+.++++|+.|...+.+... ...+|.++|+|++|+|+++
T Consensus 1 m~a~~~~~~--~~~~~~~~~p~~~~~~v~V~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~v 78 (341)
T cd08262 1 MRAAVFRDG--PLVVRDVPDPEPGPGQVLVKVLACGICGSDLHATAHPEAMVDDAGGPSLMDLGADIVLGHEFCGEVVDY 78 (341)
T ss_pred CceEEEeCC--ceEEEecCCCCCCCCeEEEEEEEEEEcccchHHHcCCCcccccccccccccCCCCcccccceeEEEEEe
Confidence 689999877 599999999999999999999999999999998877321 2235788999999999999
Q ss_pred CCCCCc-cCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeec
Q 025895 79 GEGVTE-VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHD 157 (246)
Q Consensus 79 G~~~~~-~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 157 (246)
|+++++ +++||+|+..+...|+.|..|..++.+ .. .|+|++|+.++.
T Consensus 79 G~~v~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~--------------~~------------------~g~~~~~~~v~~ 126 (341)
T cd08262 79 GPGTERKLKVGTRVTSLPLLLCGQGASCGIGLSP--------------EA------------------PGGYAEYMLLSE 126 (341)
T ss_pred CCCCcCCCCCCCEEEecCCcCCCCChhhhCCCCc--------------CC------------------CCceeeeEEech
Confidence 999987 999999999999999999999332110 01 238999999999
Q ss_pred CceEEcCCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895 158 VSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS 237 (246)
Q Consensus 158 ~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~ 237 (246)
+.++++|+++++++++ +++++.++|++ ....+++++++|||+|+|.+|.+++|+|+.+|+..++++++++++.+.+++
T Consensus 127 ~~~~~lP~~~s~~~a~-~~~~~~~a~~~-~~~~~~~~g~~VlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~ 204 (341)
T cd08262 127 ALLLRVPDGLSMEDAA-LTEPLAVGLHA-VRRARLTPGEVALVIGCGPIGLAVIAALKARGVGPIVASDFSPERRALALA 204 (341)
T ss_pred HHeEECCCCCCHHHhh-hhhhHHHHHHH-HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH
Confidence 9999999999998877 56688889987 477889999999999889999999999999999668888889999999999
Q ss_pred cCCC
Q 025895 238 CVSS 241 (246)
Q Consensus 238 lg~~ 241 (246)
+|++
T Consensus 205 ~g~~ 208 (341)
T cd08262 205 MGAD 208 (341)
T ss_pred cCCc
Confidence 9986
No 65
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.97 E-value=6e-29 Score=218.81 Aligned_cols=208 Identities=30% Similarity=0.448 Sum_probs=175.9
Q ss_pred eeeeEeecCCCCeEEEEeecCCC-CCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCCC
Q 025895 10 CKAAVAWEPNKPLVIEDVQVAPP-QAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG 88 (246)
Q Consensus 10 ~ka~~~~~~~~~~~~~e~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~G 88 (246)
||++++.++++ +++++.|.|.| +++||+||+.++++|++|+..+.+..+. ..|.++|||++|+|+++|+++..+++|
T Consensus 1 m~~~~~~~~~~-~~~~~~~~p~~~~~~ev~V~v~~~~i~~~d~~~~~g~~~~-~~~~~~g~e~~G~V~~vG~~v~~~~~G 78 (345)
T cd08287 1 MRATVIHGPGD-IRVEEVPDPVIEEPTDAVIRVVATCVCGSDLWPYRGVSPT-RAPAPIGHEFVGVVEEVGSEVTSVKPG 78 (345)
T ss_pred CceeEEecCCc-eeEEeCCCCCCCCCCeEEEEEeeeeecccchhhhcCCCCC-CCCcccccceEEEEEEeCCCCCccCCC
Confidence 78999998776 99999999997 8999999999999999999888776543 347899999999999999999999999
Q ss_pred CEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecC--ceEEcCCC
Q 025895 89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV--SVAKIDPQ 166 (246)
Q Consensus 89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~ip~~ 166 (246)
|+|+......|+.|.+|..++.++|.+... .|.. .+| +|++|+.++.+ .++++|++
T Consensus 79 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~g------------------~~~~~~~v~~~~~~~~~lP~~ 136 (345)
T cd08287 79 DFVIAPFAISDGTCPFCRAGFTTSCVHGGF---WGAF-VDG------------------GQGEYVRVPLADGTLVKVPGS 136 (345)
T ss_pred CEEEeccccCCCCChhhhCcCcccCCCCCc---ccCC-CCC------------------ceEEEEEcchhhCceEECCCC
Confidence 999886667899999999999999986542 2211 334 89999999974 99999999
Q ss_pred CCchhhh-----hccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895 167 APLDKVC-----LLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS 241 (246)
Q Consensus 167 ~~~~~aa-----~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~ 241 (246)
++++.+. .+.+.+.++|+++ ...+++++++|+|.|+|.+|++++++|+++|+..++++++++++.+.++++|++
T Consensus 137 l~~~~~~~~~~~~l~~~~~~a~~~~-~~~~~~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~ga~ 215 (345)
T cd08287 137 PSDDEDLLPSLLALSDVMGTGHHAA-VSAGVRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALAREFGAT 215 (345)
T ss_pred CChhhhhhhhhHhhhcHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCc
Confidence 9873221 1225677888876 467889999999988899999999999999996699999999999999999986
Q ss_pred c
Q 025895 242 S 242 (246)
Q Consensus 242 ~ 242 (246)
.
T Consensus 216 ~ 216 (345)
T cd08287 216 D 216 (345)
T ss_pred e
Confidence 3
No 66
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=99.97 E-value=5.9e-29 Score=222.57 Aligned_cols=208 Identities=28% Similarity=0.475 Sum_probs=175.4
Q ss_pred ceeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCC------C-CCCCCcccccceEEEEEEcCCC
Q 025895 9 TCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD------P-EGLFPCILGHEAAGIVESVGEG 81 (246)
Q Consensus 9 ~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~------~-~~~~p~v~G~e~vG~V~~vG~~ 81 (246)
.+...++..+ + ++++++|.|++++++|+||+.++++|++|+..+.+.. + ...+|.++|||++|+|+++|++
T Consensus 28 ~~~~~~~~~~-~-~~~~~~~~p~~~~~ev~V~v~a~gi~~~D~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~ 105 (384)
T cd08265 28 NLGSKVWRYP-E-LRVEDVPVPNLKPDEILIRVKACGICGSDIHLYETDKDGYILYPGLTEFPVVIGHEFSGVVEKTGKN 105 (384)
T ss_pred cceeEEEeCC-C-EEEEECCCCCCCCCEEEEEEEEEEEcHhHHHHHcCCCCcccccCcccCCCcccccceEEEEEEECCC
Confidence 3445555543 3 9999999999999999999999999999998776321 1 1346789999999999999999
Q ss_pred CCccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceE
Q 025895 82 VTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVA 161 (246)
Q Consensus 82 ~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 161 (246)
+++|++||+|++.+..+|+.|..|..+..++|..+.. .|+. .+| +|++|+.++.+.++
T Consensus 106 v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~---~g~~-~~g------------------~~~~~v~v~~~~~~ 163 (384)
T cd08265 106 VKNFEKGDPVTAEEMMWCGMCRACRSGSPNHCKNLKE---LGFS-ADG------------------AFAEYIAVNARYAW 163 (384)
T ss_pred CCCCCCCCEEEECCCCCCCCChhhhCcCcccCCCcce---eeec-CCC------------------cceeeEEechHHeE
Confidence 9999999999999999999999999999999987542 2322 234 89999999999999
Q ss_pred EcCCCC-------Cchhhhhccccchhhhhhhhhh-CCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHH
Q 025895 162 KIDPQA-------PLDKVCLLGCGVPTGLGAVWNT-AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233 (246)
Q Consensus 162 ~ip~~~-------~~~~aa~l~~~~~ta~~~l~~~-~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~ 233 (246)
++|+++ +++ ++.+..++.++|+++... .+++++++|+|+|+|.+|++++++|+.+|+..|++++++++|.+
T Consensus 164 ~lP~~~~~~~~~~~~~-~a~~~~~~~ta~~al~~~~~~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~ 242 (384)
T cd08265 164 EINELREIYSEDKAFE-AGALVEPTSVAYNGLFIRGGGFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRN 242 (384)
T ss_pred ECCccccccccCCCHH-HhhhhhHHHHHHHHHHhhcCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHH
Confidence 999863 444 555666888999987655 68999999999988999999999999999977999999999999
Q ss_pred HHhhcCCC
Q 025895 234 RGMSCVSS 241 (246)
Q Consensus 234 ~~~~lg~~ 241 (246)
+++++|++
T Consensus 243 ~~~~~g~~ 250 (384)
T cd08265 243 LAKEMGAD 250 (384)
T ss_pred HHHHcCCC
Confidence 99999986
No 67
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=99.97 E-value=1.3e-28 Score=216.45 Aligned_cols=207 Identities=32% Similarity=0.516 Sum_probs=180.8
Q ss_pred eeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCCCC
Q 025895 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD 89 (246)
Q Consensus 10 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~Gd 89 (246)
|||+++.+++. +.+++.+.|.+.+++|+||+.++++|+.|+..+.+.+....+|.++|+|++|+|+++|++++.+++||
T Consensus 1 ~~~~~~~~~~~-~~~~~~~~~~l~~~~v~i~v~~~~l~~~d~~~~~g~~~~~~~~~~~g~~~~G~V~~~G~~v~~~~~Gd 79 (343)
T cd08235 1 MKAAVLHGPND-VRLEEVPVPEPGPGEVLVKVRACGICGTDVKKIRGGHTDLKPPRILGHEIAGEIVEVGDGVTGFKVGD 79 (343)
T ss_pred CeEEEEecCCc-eEEEEccCCCCCCCeEEEEEEEeeeccccHHHHcCCCccCCCCcccccceEEEEEeeCCCCCCCCCCC
Confidence 68999988875 99999999999999999999999999999998887654334577999999999999999999999999
Q ss_pred EEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCc-----eEEcC
Q 025895 90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVS-----VAKID 164 (246)
Q Consensus 90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~ip 164 (246)
+|+..+...|+.|.+|..++.+.|..... .|. ...|+|++|+.++.+. ++++|
T Consensus 80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-------------------~~~g~~~~~v~v~~~~~~~~~~~~lP 137 (343)
T cd08235 80 RVFVAPHVPCGECHYCLRGNENMCPNYKK---FGN-------------------LYDGGFAEYVRVPAWAVKRGGVLKLP 137 (343)
T ss_pred EEEEccCCCCCCChHHHCcCcccCCCcce---ecc-------------------CCCCcceeeEEecccccccccEEECC
Confidence 99999999999999999999999987543 111 1234999999999988 99999
Q ss_pred CCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895 165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS 241 (246)
Q Consensus 165 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~ 241 (246)
+++++.+++.+ +.+.+||+++. ...++++++|+|+|+|.+|++++++|+.+|++.++++++++++.+.++++|++
T Consensus 138 ~~~~~~~aa~~-~~~~~a~~~l~-~~~~~~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~~~g~~ 212 (343)
T cd08235 138 DNVSFEEAALV-EPLACCINAQR-KAGIKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKKLGAD 212 (343)
T ss_pred CCCCHHHHHhh-hHHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCc
Confidence 99999998876 68889999874 45899999999998899999999999999994399999999999988888875
No 68
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=99.97 E-value=1.2e-28 Score=215.07 Aligned_cols=209 Identities=29% Similarity=0.438 Sum_probs=181.9
Q ss_pred eeeeEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCC-CCCCcccccceEEEEEEcCCCCCccC
Q 025895 10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQ 86 (246)
Q Consensus 10 ~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~-~~~p~v~G~e~vG~V~~vG~~~~~~~ 86 (246)
|||+++...+.+ +++++.+.|.+.+++|+||+.++++|++|+..+.+.... ...|.++|||++|+|+++|+++..++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~ 80 (342)
T cd08266 1 MKAVVIRGHGGPEVLEYGDLPEPEPGPDEVLVRVKAAALNHLDLWVRRGMPGIKLPLPHILGSDGAGVVEAVGPGVTNVK 80 (342)
T ss_pred CeEEEEecCCCccceeEeecCCCCCCCCeEEEEEEeeecCHHHHHHhcCCCCCCCCCCeecccceEEEEEEeCCCCCCCC
Confidence 689998844332 888888888899999999999999999999988876532 24578999999999999999998999
Q ss_pred CCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCC
Q 025895 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (246)
Q Consensus 87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~ 166 (246)
+||+|++.+...|+.|.+|..+..+.|..... .|.. .. |+|++|+.++.+.++++|++
T Consensus 81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~-~~------------------g~~~~~~~~~~~~~~~~p~~ 138 (342)
T cd08266 81 PGQRVVIYPGISCGRCEYCLAGRENLCAQYGI---LGEH-VD------------------GGYAEYVAVPARNLLPIPDN 138 (342)
T ss_pred CCCEEEEccccccccchhhccccccccccccc---cccc-cC------------------cceeEEEEechHHceeCCCC
Confidence 99999999999999999999999999986432 2221 22 38999999999999999999
Q ss_pred CCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS 241 (246)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~ 241 (246)
+++.+++.+++++.++|+++.+...+.++++++|+|+ +.+|++++++++.+|+ +++.+++++++.+.+.+++.+
T Consensus 139 ~~~~~a~~~~~~~~~a~~~l~~~~~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~~~ 213 (342)
T cd08266 139 LSFEEAAAAPLTFLTAWHMLVTRARLRPGETVLVHGAGSGVGSAAIQIAKLFGA-TVIATAGSEDKLERAKELGAD 213 (342)
T ss_pred CCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCC
Confidence 9999999998889999998878888999999999998 7999999999999999 899999999999888877764
No 69
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=99.97 E-value=6e-29 Score=217.33 Aligned_cols=182 Identities=23% Similarity=0.246 Sum_probs=156.2
Q ss_pred eeeeEeecCCCC-----eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCC-CCCCcccccceEEEEEEcCCCCC
Q 025895 10 CKAAVAWEPNKP-----LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVT 83 (246)
Q Consensus 10 ~ka~~~~~~~~~-----~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~-~~~p~v~G~e~vG~V~~vG~~~~ 83 (246)
|||+++.++++| ++++++|.|.|+++||+||+.++++|++|+..+.+.++. ..+|.++|||++|+|+++|+++.
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~gi~~~d~~~~~g~~~~~~~~p~v~G~e~~G~V~~vG~~v~ 80 (324)
T cd08291 1 MKALLLEEYGKPLEVKELSLPEPEVPEPGPGEVLIKVEAAPINPSDLGFLKGQYGSTKALPVPPGFEGSGTVVAAGGGPL 80 (324)
T ss_pred CeEEEEeecCCCccccEEEecccCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCCCCCCCcCCCcceEEEEEEECCCcc
Confidence 689999988853 888999999999999999999999999999988886543 35689999999999999999998
Q ss_pred c-cCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEE
Q 025895 84 E-VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAK 162 (246)
Q Consensus 84 ~-~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 162 (246)
+ |++||+|+..+. .+| +|++|+.+|.+.+++
T Consensus 81 ~~~~vGd~V~~~~~------------------------------~~g------------------~~a~~~~v~~~~~~~ 112 (324)
T cd08291 81 AQSLIGKRVAFLAG------------------------------SYG------------------TYAEYAVADAQQCLP 112 (324)
T ss_pred ccCCCCCEEEecCC------------------------------CCC------------------cchheeeecHHHeEE
Confidence 6 999999985421 123 899999999999999
Q ss_pred cCCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEE--CCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCC
Q 025895 163 IDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVF--GLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVS 240 (246)
Q Consensus 163 ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~--Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~ 240 (246)
+|+++++++++.+++...|+|. +...... ++++++|+ |+|.+|++++|+|+.+|+ +|++++++++|++.++++|+
T Consensus 113 iP~~~~~~~aa~~~~~~~ta~~-~~~~~~~-~~~~vlv~~~g~g~vG~~a~q~a~~~G~-~vi~~~~~~~~~~~~~~~g~ 189 (324)
T cd08291 113 LPDGVSFEQGASSFVNPLTALG-MLETARE-EGAKAVVHTAAASALGRMLVRLCKADGI-KVINIVRRKEQVDLLKKIGA 189 (324)
T ss_pred CCCCCCHHHHhhhcccHHHHHH-HHHhhcc-CCCcEEEEccCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCC
Confidence 9999999999988888889975 4455555 45566665 459999999999999999 89999999999999999999
Q ss_pred Cc
Q 025895 241 SS 242 (246)
Q Consensus 241 ~~ 242 (246)
+.
T Consensus 190 ~~ 191 (324)
T cd08291 190 EY 191 (324)
T ss_pred cE
Confidence 74
No 70
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=99.96 E-value=2.3e-28 Score=214.97 Aligned_cols=206 Identities=32% Similarity=0.497 Sum_probs=181.1
Q ss_pred eeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCCCC
Q 025895 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD 89 (246)
Q Consensus 10 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~Gd 89 (246)
|||+++++.++ +.+++.|.|++.++||+||+.++++|+.|.....+.+. ..+|.++|+|++|+|+++|+++..|++||
T Consensus 1 ~~a~~~~~~~~-l~~~~~~~~~l~~~~v~v~v~~~~~n~~d~~~~~~~~~-~~~~~~~g~~~~G~V~~~g~~v~~~~~Gd 78 (343)
T cd08236 1 MKALVLTGPGD-LRYEDIPKPEPGPGEVLVKVKACGICGSDIPRYLGTGA-YHPPLVLGHEFSGTVEEVGSGVDDLAVGD 78 (343)
T ss_pred CeeEEEecCCc-eeEEecCCCCCCCCeEEEEEEEEEECccchHhhcCCCC-CCCCcccCcceEEEEEEECCCCCcCCCCC
Confidence 68999999876 99999999999999999999999999999988777652 24578899999999999999999999999
Q ss_pred EEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCCc
Q 025895 90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL 169 (246)
Q Consensus 90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~ 169 (246)
+|+..+...|+.|.+|..+..+.|..... .|. .+.|+|++|+.++.+.++++|+++++
T Consensus 79 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-------------------~~~g~~~~~~~~~~~~~~~lP~~~~~ 136 (343)
T cd08236 79 RVAVNPLLPCGKCEYCKKGEYSLCSNYDY---IGS-------------------RRDGAFAEYVSVPARNLIKIPDHVDY 136 (343)
T ss_pred EEEEcCCCCCCCChhHHCcChhhCCCcce---Eec-------------------ccCCcccceEEechHHeEECcCCCCH
Confidence 99999888999999999999999987532 121 12349999999999999999999999
Q ss_pred hhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895 170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS 241 (246)
Q Consensus 170 ~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~ 241 (246)
++++.+ ....++|.++. ...++++++|+|+|+|.+|++++++|+.+|+..++++++++++.+.++++|++
T Consensus 137 ~~aa~~-~~~~ta~~~l~-~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~g~~ 206 (343)
T cd08236 137 EEAAMI-EPAAVALHAVR-LAGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELGAD 206 (343)
T ss_pred HHHHhc-chHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCC
Confidence 998887 57889999874 77889999999998899999999999999994499999999999998888875
No 71
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=99.96 E-value=3.6e-28 Score=213.56 Aligned_cols=209 Identities=33% Similarity=0.529 Sum_probs=183.0
Q ss_pred eeeeEeecCC-CCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCC-CCCCcccccceEEEEEEcCCCCCccCC
Q 025895 10 CKAAVAWEPN-KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQP 87 (246)
Q Consensus 10 ~ka~~~~~~~-~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~-~~~p~v~G~e~vG~V~~vG~~~~~~~~ 87 (246)
|||++++.++ ..++++++|.|.+.+++|+||+.++++|+.|...+.+.++. ...|.++|||++|+|+++|+++..+++
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~vG~~~~~~~~ 80 (341)
T cd08297 1 MKAAVVEEFGEKPYEVKDVPVPEPGPGEVLVKLEASGVCHTDLHAALGDWPVKPKLPLIGGHEGAGVVVAVGPGVSGLKV 80 (341)
T ss_pred CceEEeeccCCCCceEEEeeCCCCCCCeEEEEEEEeecchhHHHHHcCCCCcCCCCCccCCcccceEEEEeCCCCCCCCC
Confidence 7899998876 33999999999999999999999999999999988876542 244678999999999999999999999
Q ss_pred CCEEEeeC-CCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCC
Q 025895 88 GDHVIPCY-QAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (246)
Q Consensus 88 Gd~V~~~~-~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~ 166 (246)
||+|+..+ ...|+.|.+|..+....|.+... .|+. .. |+|++|+.++.+.++++|++
T Consensus 81 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~------------------g~~~s~~~~~~~~~~~lp~~ 138 (341)
T cd08297 81 GDRVGVKWLYDACGKCEYCRTGDETLCPNQKN---SGYT-VD------------------GTFAEYAIADARYVTPIPDG 138 (341)
T ss_pred CCEEEEecCCCCCCCCccccCCCcccCCCccc---cccc-cC------------------CcceeEEEeccccEEECCCC
Confidence 99998876 57899999999999999987643 2221 22 38999999999999999999
Q ss_pred CCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS 242 (246)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~ 242 (246)
+++.+++.+++...|||+++.. .+++++++|||+|+ +.+|++++++|+++|+ +|+++.+++++.+.++++|++.
T Consensus 139 ~~~~~~a~l~~~~~ta~~~~~~-~~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~ 213 (341)
T cd08297 139 LSFEQAAPLLCAGVTVYKALKK-AGLKPGDWVVISGAGGGLGHLGVQYAKAMGL-RVIAIDVGDEKLELAKELGADA 213 (341)
T ss_pred CCHHHHHHHHcchHHHHHHHHh-cCCCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHcCCcE
Confidence 9999999999999999998755 58999999999998 6799999999999999 8999999999999999999763
No 72
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.96 E-value=2.5e-28 Score=215.00 Aligned_cols=207 Identities=34% Similarity=0.525 Sum_probs=176.2
Q ss_pred eeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCC-CC--CCCCCcccccceEEEEEEcCCCCCccCCC
Q 025895 12 AAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK-DP--EGLFPCILGHEAAGIVESVGEGVTEVQPG 88 (246)
Q Consensus 12 a~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~-~~--~~~~p~v~G~e~vG~V~~vG~~~~~~~~G 88 (246)
|++++++.. +++++.|.|.+.+++|+||+.++++|+.|...+.+. .. ...+|.++|+|++|+|+++|+.++++++|
T Consensus 1 ~~~~~~~~~-~~~~~~~~~~l~~~~vlV~v~~~~l~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~G 79 (343)
T cd05285 1 AAVLHGPGD-LRLEERPIPEPGPGEVLVRVRAVGICGSDVHYYKHGRIGDFVVKEPMVLGHESAGTVVAVGSGVTHLKVG 79 (343)
T ss_pred CceEecCCc-eeEEECCCCCCCCCeEEEEEEEeeEccccHHHHccCCCcccCCCCCcccCcceeEEEEeeCCCCCCCCCC
Confidence 456777765 999999999999999999999999999998876322 11 12356789999999999999999999999
Q ss_pred CEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCC
Q 025895 89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP 168 (246)
Q Consensus 89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~ 168 (246)
|+|++.+..+|++|.+|..+..+.|.+.... +..... |+|++|+.++.+.++++|++++
T Consensus 80 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~------------------g~~~~~~~v~~~~~~~lP~~~~ 138 (343)
T cd05285 80 DRVAIEPGVPCRTCEFCKSGRYNLCPDMRFA---ATPPVD------------------GTLCRYVNHPADFCHKLPDNVS 138 (343)
T ss_pred CEEEEccccCCCCChhHhCcCcccCcCcccc---ccccCC------------------CceeeeEEecHHHcEECcCCCC
Confidence 9999999999999999999999999875321 110022 3899999999999999999999
Q ss_pred chhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895 169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS 242 (246)
Q Consensus 169 ~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~ 242 (246)
+++++.+ ..+.++++++ ....++++++|+|.|+|.+|++++++|+.+|++.|+++++++++.+.++++|++.
T Consensus 139 ~~~aa~~-~~~~~a~~~~-~~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~ 210 (343)
T cd05285 139 LEEGALV-EPLSVGVHAC-RRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKELGATH 210 (343)
T ss_pred HHHhhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCcE
Confidence 9998876 5778888875 7889999999999988999999999999999944999999999999999998873
No 73
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=99.96 E-value=3.3e-28 Score=213.63 Aligned_cols=208 Identities=28% Similarity=0.468 Sum_probs=173.2
Q ss_pred EeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhc-CCCC--CCCCCcccccceEEEEEEcCCCCCccCCCCE
Q 025895 14 VAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWS-GKDP--EGLFPCILGHEAAGIVESVGEGVTEVQPGDH 90 (246)
Q Consensus 14 ~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~-~~~~--~~~~p~v~G~e~vG~V~~vG~~~~~~~~Gd~ 90 (246)
++++.++ +++++.|.|.++++||+||+.++++|+.|..... +... ...+|.++|+|++|+|+++|++++++++||+
T Consensus 2 ~~~~~~~-~~~~~~~~p~l~~~~v~I~v~~~~i~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd~ 80 (339)
T cd08232 2 VIHAAGD-LRVEERPAPEPGPGEVRVRVAAGGICGSDLHYYQHGGFGTVRLREPMVLGHEVSGVVEAVGPGVTGLAPGQR 80 (339)
T ss_pred eeccCCc-eEEEEcCCCCCCCCEEEEEEEEEEECcccHHHHcCCCCCcccccCCeecCccceEEEEeeCCCCCcCCCCCE
Confidence 4666766 9999999999999999999999999999988763 3221 1245778999999999999999999999999
Q ss_pred EEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCCch
Q 025895 91 VIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLD 170 (246)
Q Consensus 91 V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~ 170 (246)
|+..+...|+.|.+|..|..+.|..... .+....+ ....|+|++|+.++.+.++++|++++++
T Consensus 81 V~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~--------------~~~~g~~~~~v~v~~~~~~~iP~~~~~~ 143 (339)
T cd08232 81 VAVNPSRPCGTCDYCRAGRPNLCLNMRF---LGSAMRF--------------PHVQGGFREYLVVDASQCVPLPDGLSLR 143 (339)
T ss_pred EEEccCCcCCCChHHhCcCcccCccccc---eeecccc--------------CCCCCceeeEEEechHHeEECcCCCCHH
Confidence 9999989999999999999999997532 1100000 0123499999999999999999999999
Q ss_pred hhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895 171 KVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS 241 (246)
Q Consensus 171 ~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~ 241 (246)
+++. ..++.++|+++...... ++++|||.|+|.+|++++|+|+.+|+.+++++++++++.++++++|++
T Consensus 144 ~aa~-~~~~~~a~~~l~~~~~~-~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~~ 212 (339)
T cd08232 144 RAAL-AEPLAVALHAVNRAGDL-AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGAD 212 (339)
T ss_pred Hhhh-cchHHHHHHHHHhcCCC-CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCC
Confidence 8876 56788899887555555 899999988899999999999999986789999999999998999875
No 74
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=99.96 E-value=4e-28 Score=212.41 Aligned_cols=206 Identities=32% Similarity=0.503 Sum_probs=181.2
Q ss_pred eeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCCCC
Q 025895 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD 89 (246)
Q Consensus 10 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~Gd 89 (246)
|||+++.++++ +++.+.|.|++++++|+||+.++++|+.|.....+..+. .+|.++|+|++|+|+.+|++++++++||
T Consensus 1 ~~a~~~~~~~~-~~~~~~~~~~l~~~~v~v~v~~~~l~~~d~~~~~g~~~~-~~p~~~g~~~~G~v~~vG~~v~~~~~Gd 78 (334)
T cd08234 1 MKALVYEGPGE-LEVEEVPVPEPGPDEVLIKVAACGICGTDLHIYEGEFGA-APPLVPGHEFAGVVVAVGSKVTGFKVGD 78 (334)
T ss_pred CeeEEecCCCc-eEEEeccCCCCCCCeEEEEEEEEeEchhhhHHhcCCCCC-CCCcccccceEEEEEEeCCCCCCCCCCC
Confidence 68999998886 999999999999999999999999999999988876543 3678999999999999999999999999
Q ss_pred EEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCCc
Q 025895 90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL 169 (246)
Q Consensus 90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~ 169 (246)
+|+..+...|++|.+|..+..+.|..... .|.. . .|+|++|+.++.+.++++|+++++
T Consensus 79 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~------------------~g~~~~~~~v~~~~~~~lP~~~~~ 136 (334)
T cd08234 79 RVAVDPNIYCGECFYCRRGRPNLCENLTA---VGVT-R------------------NGGFAEYVVVPAKQVYKIPDNLSF 136 (334)
T ss_pred EEEEcCCcCCCCCccccCcChhhCCCcce---eccC-C------------------CCcceeEEEecHHHcEECcCCCCH
Confidence 99998888999999999998888886532 1111 1 238999999999999999999999
Q ss_pred hhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895 170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS 241 (246)
Q Consensus 170 ~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~ 241 (246)
.+++.+ ..+.++++++ ...+++++++|+|+|+|.+|.+++++|+..|+..|+++++++++.+.++++|++
T Consensus 137 ~~aa~~-~~~~~a~~~l-~~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~ 206 (334)
T cd08234 137 EEAALA-EPLSCAVHGL-DLLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGAT 206 (334)
T ss_pred HHHhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCe
Confidence 988766 6778888876 778899999999998899999999999999994489999999999999888875
No 75
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=99.96 E-value=8.5e-28 Score=208.77 Aligned_cols=208 Identities=29% Similarity=0.503 Sum_probs=176.7
Q ss_pred eeeeEeecCC-CCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCCC
Q 025895 10 CKAAVAWEPN-KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG 88 (246)
Q Consensus 10 ~ka~~~~~~~-~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~G 88 (246)
||++++++++ +.++++++|.|.+.+++|+||+.++++|+.|.....+.+.....|.++|+|++|+|+++|++++.+++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~V~v~~~~l~~~d~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G 80 (306)
T cd08258 1 MKALVKTGPGPGNVELREVPEPEPGPGEVLIKVAAAGICGSDLHIYKGDYDPVETPVVLGHEFSGTIVEVGPDVEGWKVG 80 (306)
T ss_pred CeeEEEecCCCCceEEeecCCCCCCCCeEEEEEEEEEechhhHHHHcCCCCcCCCCeeeccceEEEEEEECCCcCcCCCC
Confidence 5788888755 349999999999999999999999999999998888765433457899999999999999999999999
Q ss_pred CEEEeeCC-CCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCC
Q 025895 89 DHVIPCYQ-AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA 167 (246)
Q Consensus 89 d~V~~~~~-~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~ 167 (246)
|+|+..+. ..|+.|.+|..+....|..-.. .|.. . .|+|++|+.++...++++|+++
T Consensus 81 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~------------------~g~~~~~~~v~~~~~~~lp~~~ 138 (306)
T cd08258 81 DRVVSETTFSTCGRCPYCRRGDYNLCPHRKG---IGTQ-A------------------DGGFAEYVLVPEESLHELPENL 138 (306)
T ss_pred CEEEEccCcCCCCCCcchhCcCcccCCCCce---eeec-C------------------CCceEEEEEcchHHeEECcCCC
Confidence 99998874 7899999999998888875321 1211 1 2489999999999999999999
Q ss_pred CchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE--cCChhHHHHHhhcCCC
Q 025895 168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGI--DIDPKKFDRGMSCVSS 241 (246)
Q Consensus 168 ~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~--~~~~~~~~~~~~lg~~ 241 (246)
++++++ +.....++|+++.....++++++|||.|+|.+|++++++|+.+|+ +|+++ ++++++.++++++|++
T Consensus 139 ~~~~aa-~~~~~~~a~~~l~~~~~~~~g~~vlI~g~g~~g~~~~~la~~~G~-~v~~~~~~~~~~~~~~~~~~g~~ 212 (306)
T cd08258 139 SLEAAA-LTEPLAVAVHAVAERSGIRPGDTVVVFGPGPIGLLAAQVAKLQGA-TVVVVGTEKDEVRLDVAKELGAD 212 (306)
T ss_pred CHHHHH-hhchHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEECCCCCHHHHHHHHHhCCc
Confidence 999887 666888899988888889999999998889999999999999999 77776 3455688888888875
No 76
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=99.96 E-value=6.1e-28 Score=210.16 Aligned_cols=181 Identities=27% Similarity=0.301 Sum_probs=160.8
Q ss_pred eeeeEeecCCCC---eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCC-CCCCCcccccceEEEEEEcCCCCCcc
Q 025895 10 CKAAVAWEPNKP---LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP-EGLFPCILGHEAAGIVESVGEGVTEV 85 (246)
Q Consensus 10 ~ka~~~~~~~~~---~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~-~~~~p~v~G~e~vG~V~~vG~~~~~~ 85 (246)
|||+++.+++++ ++++++|.|.+.++||+||+.++++|+.|...+.+.++ ...+|.++|||++|+|+++|+++.++
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~p~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~ 80 (324)
T cd08292 1 MRAAVHTQFGDPADVLEIGEVPKPTPGAGEVLVRTTLSPIHNHDLWTIRGTYGYKPELPAIGGSEAVGVVDAVGEGVKGL 80 (324)
T ss_pred CeeEEEccCCChhHeEEEeecCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCCCCCCCCCCCcceEEEEEEeCCCCCCC
Confidence 689999887754 78999999999999999999999999999999887664 33568899999999999999999999
Q ss_pred CCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCC
Q 025895 86 QPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP 165 (246)
Q Consensus 86 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~ 165 (246)
++||+|+..+. . |+|++|+.++...++++|+
T Consensus 81 ~~Gd~V~~~~~-------------------------------~------------------g~~~~~~~~~~~~~~~ip~ 111 (324)
T cd08292 81 QVGQRVAVAPV-------------------------------H------------------GTWAEYFVAPADGLVPLPD 111 (324)
T ss_pred CCCCEEEeccC-------------------------------C------------------CcceeEEEEchHHeEECCC
Confidence 99999985421 2 2899999999999999999
Q ss_pred CCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895 166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS 241 (246)
Q Consensus 166 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~ 241 (246)
++++++++.+++...++|+++ ....++++++|||+|+ |.+|++++++|+.+|+ .++++.+++++.+.++++|++
T Consensus 112 ~~~~~~aa~~~~~~~ta~~~~-~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~ 186 (324)
T cd08292 112 GISDEVAAQLIAMPLSALMLL-DFLGVKPGQWLIQNAAGGAVGKLVAMLAAARGI-NVINLVRRDAGVAELRALGIG 186 (324)
T ss_pred CCCHHHhhhccccHHHHHHHH-HhhCCCCCCEEEEcccccHHHHHHHHHHHHCCC-eEEEEecCHHHHHHHHhcCCC
Confidence 999999999988889999876 5578999999999987 9999999999999999 888888888888888888875
No 77
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=99.96 E-value=1.9e-28 Score=210.38 Aligned_cols=161 Identities=26% Similarity=0.418 Sum_probs=137.3
Q ss_pred ccccceEEEEEEcCCCCC------ccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcc
Q 025895 66 ILGHEAAGIVESVGEGVT------EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKP 139 (246)
Q Consensus 66 v~G~e~vG~V~~vG~~~~------~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~ 139 (246)
++|||++|+|+++|++++ ++++||||++.+..+|+.|.+|..++.+.|.+.... |.....+
T Consensus 1 v~GHE~~G~V~~vG~~v~~~~~~~~~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~---g~~~~~~---------- 67 (280)
T TIGR03366 1 VLGHEIVGEVVALRGGFTPADDGVPLRLGQRVVWSVTVPCGRCFRCRRGLPQKCDSLRKY---GHEALDS---------- 67 (280)
T ss_pred CCCcccceEEEEeCCCccccccCCCCCCCCEEEEcCCCCCCCChhhhCcCcccCCChhhc---CcccccC----------
Confidence 589999999999999998 899999999999999999999999999999975532 2110000
Q ss_pred eeeccCCcceeeeEEeecC-ceEEcCCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcC
Q 025895 140 IYHFMGTSTFSQYTVVHDV-SVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAG 218 (246)
Q Consensus 140 ~~~~~~~g~~~~~~~~~~~-~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G 218 (246)
.....|+|+||+.+|.. .++++|+++++++++.+.+...|+|+++ +.....++++|||+|+|++|++++|+|+.+|
T Consensus 68 --~~~~~G~~aey~~v~~~~~~~~lP~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~G~G~vG~~~~~~ak~~G 144 (280)
T TIGR03366 68 --GWPLSGGYAEHCHLPAGTAIVPVPDDLPDAVAAPAGCATATVMAAL-EAAGDLKGRRVLVVGAGMLGLTAAAAAAAAG 144 (280)
T ss_pred --CccccccceeeEEecCCCcEEECCCCCCHHHhhHhhhHHHHHHHHH-HhccCCCCCEEEEECCCHHHHHHHHHHHHcC
Confidence 00113499999999997 7999999999999999998889999876 4455669999999999999999999999999
Q ss_pred CCeEEEEcCChhHHHHHhhcCCCc
Q 025895 219 ASRVIGIDIDPKKFDRGMSCVSSS 242 (246)
Q Consensus 219 ~~~vi~~~~~~~~~~~~~~lg~~~ 242 (246)
+.+|++++++++|+++++++|++.
T Consensus 145 ~~~Vi~~~~~~~r~~~a~~~Ga~~ 168 (280)
T TIGR03366 145 AARVVAADPSPDRRELALSFGATA 168 (280)
T ss_pred CCEEEEECCCHHHHHHHHHcCCcE
Confidence 955999999999999999999973
No 78
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=99.96 E-value=1.2e-27 Score=210.59 Aligned_cols=207 Identities=32% Similarity=0.446 Sum_probs=174.5
Q ss_pred eeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCC---CCCCCCcccccceEEEEEEcCCCCCccC
Q 025895 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD---PEGLFPCILGHEAAGIVESVGEGVTEVQ 86 (246)
Q Consensus 10 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~---~~~~~p~v~G~e~vG~V~~vG~~~~~~~ 86 (246)
||+++++.++..+++.+.|.|.|.+++++||+.++++|+.|...+.+.. ....+|.++|||++|+|+.+|++++.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~ 80 (341)
T cd05281 1 MKAIVKTKAGPGAELVEVPVPKPGPGEVLIKVLAASICGTDVHIYEWDEWAQSRIKPPLIFGHEFAGEVVEVGEGVTRVK 80 (341)
T ss_pred CcceEEecCCCceEEEeCCCCCCCCCeEEEEEEEEEEcccchHHHcCCCCccccCCCCcccccceEEEEEEECCCCCCCC
Confidence 6899999888779999999999999999999999999999988754421 1224567899999999999999998999
Q ss_pred CCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCC
Q 025895 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (246)
Q Consensus 87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~ 166 (246)
+||+|+..+..+|+.|.+|..+..++|.... ..|.. . .|+|++|+.++.+.++++|++
T Consensus 81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~------------------~g~~~~~v~v~~~~~~~lP~~ 138 (341)
T cd05281 81 VGDYVSAETHIVCGKCYQCRTGNYHVCQNTK---ILGVD-T------------------DGCFAEYVVVPEENLWKNDKD 138 (341)
T ss_pred CCCEEEECCccCCCCChHHHCcCcccCcccc---eEecc-C------------------CCcceEEEEechHHcEECcCC
Confidence 9999999998999999999999999997531 12211 2 348999999999999999999
Q ss_pred CCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS 241 (246)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~ 241 (246)
++++.+ .+...+.++++++. ...+++++|+|.|+|.+|++++++|+.+|+..|++++++++|.+.++++|++
T Consensus 139 ~~~~~a-~~~~~~~~a~~~~~--~~~~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~ 210 (341)
T cd05281 139 IPPEIA-SIQEPLGNAVHTVL--AGDVSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKMGAD 210 (341)
T ss_pred CCHHHh-hhhhHHHHHHHHHH--hcCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCcc
Confidence 998554 55567777877653 4457899999988899999999999999986688888999999999999986
No 79
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=99.96 E-value=6.1e-28 Score=211.44 Aligned_cols=185 Identities=22% Similarity=0.282 Sum_probs=160.9
Q ss_pred eeeEeecC---CCC--eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCcc
Q 025895 11 KAAVAWEP---NKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEV 85 (246)
Q Consensus 11 ka~~~~~~---~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~ 85 (246)
||+++.++ +++ ++++|+|.|+++++||+||++++++|+.|..++.+..+...+|.++|+|++|+|+++|++++.|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~vG~~v~~~ 80 (336)
T TIGR02817 1 KAVGYKKPLPITDPDALVDIDLPKPKPGGRDLLVEVKAISVNPVDTKVRARMAPEAGQPKILGWDAAGVVVAVGDEVTLF 80 (336)
T ss_pred CceeeccccCCCCcccceecccCCCCCCCCEEEEEEEEEEcChHHHHHHcCCCCCCCCCcccceeeEEEEEEeCCCCCCC
Confidence 56777775 443 8888999999999999999999999999998887765444568899999999999999999999
Q ss_pred CCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCC
Q 025895 86 QPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP 165 (246)
Q Consensus 86 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~ 165 (246)
++||+|+.... .. .+ |+|++|+.++.+.++++|+
T Consensus 81 ~~Gd~V~~~~~---------------------------~~-~~------------------g~~~~~~~v~~~~~~~ip~ 114 (336)
T TIGR02817 81 KPGDEVWYAGD---------------------------ID-RP------------------GSNAEFHLVDERIVGHKPK 114 (336)
T ss_pred CCCCEEEEcCC---------------------------CC-CC------------------CcccceEEEcHHHcccCCC
Confidence 99999974320 00 12 3899999999999999999
Q ss_pred CCCchhhhhccccchhhhhhhhhhCCCCC-----CCEEEEECC-CHHHHHHHHHHHHc-CCCeEEEEcCChhHHHHHhhc
Q 025895 166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEP-----GSIVAVFGL-GTVGLAVAEGAKAA-GASRVIGIDIDPKKFDRGMSC 238 (246)
Q Consensus 166 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~-----~~~VlI~Ga-g~~G~~ai~~a~~~-G~~~vi~~~~~~~~~~~~~~l 238 (246)
++++++++.++++..|||+++....++.+ +++|||+|+ |.+|++++|+|+.+ |+ +|+++.+++++.+.++++
T Consensus 115 ~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~ga~g~vg~~~~~~ak~~~G~-~vi~~~~~~~~~~~l~~~ 193 (336)
T TIGR02817 115 SLSFAEAAALPLTSITAWELLFDRLGINDPVAGDKRALLIIGGAGGVGSILIQLARQLTGL-TVIATASRPESQEWVLEL 193 (336)
T ss_pred CCCHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCC-EEEEEcCcHHHHHHHHHc
Confidence 99999999999999999998877777776 999999987 99999999999998 99 899999999999999999
Q ss_pred CCCc
Q 025895 239 VSSS 242 (246)
Q Consensus 239 g~~~ 242 (246)
|++.
T Consensus 194 g~~~ 197 (336)
T TIGR02817 194 GAHH 197 (336)
T ss_pred CCCE
Confidence 9863
No 80
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.96 E-value=2.3e-27 Score=208.93 Aligned_cols=199 Identities=27% Similarity=0.278 Sum_probs=165.4
Q ss_pred eeeeEeecCCCC--eEEEE-eecCCCCCCeEEEEEeeeecchhhhhhhcCCCC--------------------CCCCCcc
Q 025895 10 CKAAVAWEPNKP--LVIED-VQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP--------------------EGLFPCI 66 (246)
Q Consensus 10 ~ka~~~~~~~~~--~~~~e-~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~--------------------~~~~p~v 66 (246)
||++++...+.+ +.+.+ .+.|.+.+++|+||+.++++|++|..++.+.+. ...+|.+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 80 (350)
T cd08274 1 MRAVLLTGHGGLDKLVYRDDVPVPTPAPGEVLIRVGACGVNNTDINTREGWYSTEVDGATDSTGAGEAGWWGGTLSFPRI 80 (350)
T ss_pred CeEEEEeccCCccceeecccCCCCCCCCCeEEEEEEeccCCHHHHHHhcCCCCCccccccccccccccccccCCCCCCcc
Confidence 688888876643 55654 577788999999999999999999998876542 2356889
Q ss_pred cccceEEEEEEcCCCCCccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCC
Q 025895 67 LGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGT 146 (246)
Q Consensus 67 ~G~e~vG~V~~vG~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~ 146 (246)
+|||++|+|+++|+++.+|++||+|+..+..+|++|..|. .|.. .|.. .+
T Consensus 81 ~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~-----~~~~------~~~~-~~------------------ 130 (350)
T cd08274 81 QGADIVGRVVAVGEGVDTARIGERVLVDPSIRDPPEDDPA-----DIDY------IGSE-RD------------------ 130 (350)
T ss_pred cCCcceEEEEEeCCCCCCCCCCCEEEEecCcCCCCccccc-----cccc------cCCC-CC------------------
Confidence 9999999999999999999999999998888888776542 1211 1110 12
Q ss_pred cceeeeEEeecCceEEcCCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEE
Q 025895 147 STFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGI 225 (246)
Q Consensus 147 g~~~~~~~~~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~ 225 (246)
|+|++|+.++...++++|+++++.+++.+.+++.++|+++ ....++++++|||+|+ |.+|++++++|+.+|+ +++++
T Consensus 131 g~~~~~~~v~~~~~~~ip~~~~~~~~a~l~~~~~ta~~~~-~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~-~vi~~ 208 (350)
T cd08274 131 GGFAEYTVVPAENAYPVNSPLSDVELATFPCSYSTAENML-ERAGVGAGETVLVTGASGGVGSALVQLAKRRGA-IVIAV 208 (350)
T ss_pred ccceEEEEecHHHceeCCCCCCHHHHHhcccHHHHHHHHH-hhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCC-EEEEE
Confidence 3899999999999999999999999999999999999976 7788999999999998 9999999999999999 78888
Q ss_pred cCChhHHHHHhhcCCC
Q 025895 226 DIDPKKFDRGMSCVSS 241 (246)
Q Consensus 226 ~~~~~~~~~~~~lg~~ 241 (246)
+.++ +++.++++|++
T Consensus 209 ~~~~-~~~~~~~~g~~ 223 (350)
T cd08274 209 AGAA-KEEAVRALGAD 223 (350)
T ss_pred eCch-hhHHHHhcCCe
Confidence 7665 88888999985
No 81
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=99.96 E-value=3e-27 Score=208.02 Aligned_cols=170 Identities=19% Similarity=0.218 Sum_probs=142.2
Q ss_pred eEEEEeecCCCC-CCeEEEEEeeeecchhhhhhhcCC---CCCCCCCcccccceEEEEEEcCCCCCccCCCCEEEeeCCC
Q 025895 22 LVIEDVQVAPPQ-AGEVRIKILFTALCHTDAYTWSGK---DPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQA 97 (246)
Q Consensus 22 ~~~~e~~~p~~~-~~eVlVkv~~~~i~~~D~~~~~~~---~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~Gd~V~~~~~~ 97 (246)
++++|+|.|+|. +|||||||.+++||+.|...+... ....++|.++|||++|+|+++|+++++|++||+|+...
T Consensus 23 ~~~~~~~~p~~~~~~evlV~v~a~gin~~d~~~~~~~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~-- 100 (345)
T cd08293 23 FRVEECTLPDELNEGQVLVRTLYLSVDPYMRCRMNEDTGTDYLAPWQLSQVLDGGGVGVVEESKHQKFAVGDIVTSFN-- 100 (345)
T ss_pred eEEEeccCCCCCCCCeEEEEEEEEecCHHHHhhcccccccccCCCccCCCceEeeEEEEEeccCCCCCCCCCEEEecC--
Confidence 889999999874 999999999999999986433211 11224678999999999999999999999999997421
Q ss_pred CCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCCchh----hh
Q 025895 98 ECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDK----VC 173 (246)
Q Consensus 98 ~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~----aa 173 (246)
++|++|++++.+.++++|+++++.+ ++
T Consensus 101 -------------------------------------------------~~~ae~~~v~~~~~~~iP~~~~~~~~~~~~a 131 (345)
T cd08293 101 -------------------------------------------------WPWQTYAVLDGSSLEKVDPQLVDGHLSYFLG 131 (345)
T ss_pred -------------------------------------------------CCceeEEEecHHHeEEcCccccccchhHHhh
Confidence 1699999999999999999864432 34
Q ss_pred hccccchhhhhhhhhhCCCCCC--CEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh-cCCCc
Q 025895 174 LLGCGVPTGLGAVWNTAKVEPG--SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS-CVSSS 242 (246)
Q Consensus 174 ~l~~~~~ta~~~l~~~~~~~~~--~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~-lg~~~ 242 (246)
.+++++.|||+++.+..+++++ ++|||+|+ |++|++++|+|+++|+.+|++++++++|.+.+++ +|++.
T Consensus 132 ~~~~~~~ta~~al~~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~ 204 (345)
T cd08293 132 AVGLPGLTALIGIQEKGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDA 204 (345)
T ss_pred hcCcHHHHHHHHHHHhccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcE
Confidence 5667889999988777778876 99999998 9999999999999998679999999999998876 99873
No 82
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=99.95 E-value=2.1e-27 Score=208.54 Aligned_cols=184 Identities=28% Similarity=0.354 Sum_probs=161.7
Q ss_pred eeeeEeecCCCC---eEEEEeecCCCCC-CeEEEEEeeeecchhhhhhhcCCCCCC-C----CCcccccceEEEEEEcCC
Q 025895 10 CKAAVAWEPNKP---LVIEDVQVAPPQA-GEVRIKILFTALCHTDAYTWSGKDPEG-L----FPCILGHEAAGIVESVGE 80 (246)
Q Consensus 10 ~ka~~~~~~~~~---~~~~e~~~p~~~~-~eVlVkv~~~~i~~~D~~~~~~~~~~~-~----~p~v~G~e~vG~V~~vG~ 80 (246)
|||+++..++.+ +.+++.|.|.|.+ ++|+||+.++++|+.|...+.+..+.. . .|.++|||++|+|+++|+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~v~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~g~e~~G~V~~vG~ 80 (341)
T cd08290 1 AKALVYTEHGEPKEVLQLESYEIPPPGPPNEVLVKMLAAPINPADINQIQGVYPIKPPTTPEPPAVGGNEGVGEVVKVGS 80 (341)
T ss_pred CceEEEccCCCchhheEEeecCCCCCCCCCEEEEEEEecCCCHHHHHHhcCcCCCCCcccCCCCCCCCcceEEEEEEeCC
Confidence 799999998876 8999999999988 999999999999999999887765422 2 577999999999999999
Q ss_pred CCCccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCce
Q 025895 81 GVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSV 160 (246)
Q Consensus 81 ~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 160 (246)
++..+++||+|+.... .. |+|++|+.++.+.+
T Consensus 81 ~v~~~~~Gd~V~~~~~------------------------------~~------------------g~~~~~~~v~~~~~ 112 (341)
T cd08290 81 GVKSLKPGDWVIPLRP------------------------------GL------------------GTWRTHAVVPADDL 112 (341)
T ss_pred CCCCCCCCCEEEecCC------------------------------CC------------------ccchheEeccHHHe
Confidence 9999999999985431 11 38999999999999
Q ss_pred EEcCCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCh----hHHHHH
Q 025895 161 AKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP----KKFDRG 235 (246)
Q Consensus 161 ~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~----~~~~~~ 235 (246)
+++|+++++++++.+++.+.|+|+++.....++++++|||+|+ |.+|++++++|++.|+ +++++.+++ ++.+.+
T Consensus 113 ~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~~ 191 (341)
T cd08290 113 IKVPNDVDPEQAATLSVNPCTAYRLLEDFVKLQPGDWVIQNGANSAVGQAVIQLAKLLGI-KTINVVRDRPDLEELKERL 191 (341)
T ss_pred EeCCCCCCHHHHHHhhccHHHHHHHHHhhcccCCCCEEEEccchhHHHHHHHHHHHHcCC-eEEEEEcCCCcchhHHHHH
Confidence 9999999999999999999999998877778999999999987 9999999999999999 777777665 678888
Q ss_pred hhcCCCc
Q 025895 236 MSCVSSS 242 (246)
Q Consensus 236 ~~lg~~~ 242 (246)
+++|++.
T Consensus 192 ~~~g~~~ 198 (341)
T cd08290 192 KALGADH 198 (341)
T ss_pred HhcCCCE
Confidence 8899873
No 83
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=99.95 E-value=5.2e-27 Score=204.94 Aligned_cols=184 Identities=25% Similarity=0.273 Sum_probs=164.2
Q ss_pred ceeeeEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccC
Q 025895 9 TCKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQ 86 (246)
Q Consensus 9 ~~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~ 86 (246)
+||++++++++.+ ++++++|.|.++++||+||+.++++|+.|+....+.++....|.++|||++|+|+.+|+++..++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~~~~~~~~g~e~~G~v~~vG~~v~~~~ 80 (327)
T PRK10754 1 MAKRIEFHKHGGPEVLQAVEFTPADPAENEVQVENKAIGINYIDTYIRSGLYPPPSLPSGLGTEAAGVVSKVGSGVKHIK 80 (327)
T ss_pred CceEEEEeccCChhHeEEeeccCCCCCCCEEEEEEEEEEcCHHHhhhcCCCCCCCCCCCccCcceEEEEEEeCCCCCCCC
Confidence 6899999987765 88999999999999999999999999999998887765555678899999999999999999999
Q ss_pred CCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCC
Q 025895 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (246)
Q Consensus 87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~ 166 (246)
+||+|+.... .. |+|++|+.++.+.++++|++
T Consensus 81 ~Gd~V~~~~~------------------------------~~------------------g~~~~~v~v~~~~~~~lp~~ 112 (327)
T PRK10754 81 VGDRVVYAQS------------------------------AL------------------GAYSSVHNVPADKAAILPDA 112 (327)
T ss_pred CCCEEEECCC------------------------------CC------------------cceeeEEEcCHHHceeCCCC
Confidence 9999974311 11 38999999999999999999
Q ss_pred CCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS 241 (246)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~ 241 (246)
+++++++.+++...++|.++.....+.++++|+|+|+ |.+|++++++++.+|+ +++++++++++++.++++|++
T Consensus 113 ~~~~~~~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~lak~~G~-~v~~~~~~~~~~~~~~~~g~~ 187 (327)
T PRK10754 113 ISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGSAQKAQRAKKAGAW 187 (327)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHCCCC
Confidence 9999999888888999988777788999999999976 9999999999999999 899999999999999999975
No 84
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=99.95 E-value=9.2e-27 Score=204.75 Aligned_cols=181 Identities=25% Similarity=0.302 Sum_probs=151.8
Q ss_pred ceeeeEeecCCC-CeEEEEeec----CCCCCCeEEEEEeeeecchhhhhhhcCCCCC-CCCCcccccce--EEEEEEcCC
Q 025895 9 TCKAAVAWEPNK-PLVIEDVQV----APPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEA--AGIVESVGE 80 (246)
Q Consensus 9 ~~ka~~~~~~~~-~~~~~e~~~----p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~-~~~p~v~G~e~--vG~V~~vG~ 80 (246)
-+|++....+.. .|++++.|. |+|++|||||||++++||+.|++.+.+.+.. ..+|.++|++. .|.+..+|+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~vlv~v~~~~inp~d~~~~~g~~~~~~~~p~~~g~~~~g~~~~~~v~~ 86 (338)
T cd08295 7 ILKAYVTGFPKESDLELRTTKLTLKVPPGGSGDVLVKNLYLSCDPYMRGRMKGHDDSLYLPPFKPGEVITGYGVAKVVDS 86 (338)
T ss_pred EEecCCCCCCCccceEEEEecCCcCCCCCCCCeEEEEEEEEeeCHHHHHhhccCCccccCCCcCCCCeEeccEEEEEEec
Confidence 356666544333 399999988 8899999999999999999999988775432 24678888754 455556788
Q ss_pred CCCccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeec-Cc
Q 025895 81 GVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHD-VS 159 (246)
Q Consensus 81 ~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~ 159 (246)
+++.|++||+|+.. |+|+||+++|. ..
T Consensus 87 ~v~~~~vGd~V~~~----------------------------------------------------g~~aey~~v~~~~~ 114 (338)
T cd08295 87 GNPDFKVGDLVWGF----------------------------------------------------TGWEEYSLIPRGQD 114 (338)
T ss_pred CCCCCCCCCEEEec----------------------------------------------------CCceeEEEecchhc
Confidence 88889999999621 27999999999 79
Q ss_pred eEEcC-CCCCch-hhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHh
Q 025895 160 VAKID-PQAPLD-KVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM 236 (246)
Q Consensus 160 ~~~ip-~~~~~~-~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~ 236 (246)
++++| +++++. +++.+++++.|||+++.+..++++|++|||+|+ |++|++++|+|+.+|+ +|++++++++|.+.++
T Consensus 115 ~~~lp~~~~~~~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~-~Vi~~~~~~~~~~~~~ 193 (338)
T cd08295 115 LRKIDHTDVPLSYYLGLLGMPGLTAYAGFYEVCKPKKGETVFVSAASGAVGQLVGQLAKLKGC-YVVGSAGSDEKVDLLK 193 (338)
T ss_pred eeecCCCCCCHHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH
Confidence 99995 678876 788899999999998878889999999999998 9999999999999999 8999999999999999
Q ss_pred h-cCCCc
Q 025895 237 S-CVSSS 242 (246)
Q Consensus 237 ~-lg~~~ 242 (246)
+ +|++.
T Consensus 194 ~~lGa~~ 200 (338)
T cd08295 194 NKLGFDD 200 (338)
T ss_pred HhcCCce
Confidence 8 99873
No 85
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=99.95 E-value=1.9e-26 Score=201.29 Aligned_cols=174 Identities=22% Similarity=0.204 Sum_probs=148.0
Q ss_pred ceeeeEeecC--CCC----eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCC
Q 025895 9 TCKAAVAWEP--NKP----LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGV 82 (246)
Q Consensus 9 ~~ka~~~~~~--~~~----~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~ 82 (246)
+||+|++.++ +++ ++++|.|.|+|++|||+|||++++||+.|...... ...+|.++|+|++|+|++ .+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~evlVkv~a~~in~~~~~~~~~---~~~~p~v~G~e~~G~V~~---~~ 75 (329)
T cd08294 2 KAKTWVLKKHFDGKPKESDFELVEEELPPLKDGEVLCEALFLSVDPYMRPYSKR---LNEGDTMIGTQVAKVIES---KN 75 (329)
T ss_pred CceEEEEecCCCCCCCccceEEEecCCCCCCCCcEEEEEEEEecCHHHhccccc---CCCCCcEecceEEEEEec---CC
Confidence 6899999983 343 89999999999999999999999999887552221 124688999999999995 34
Q ss_pred CccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecC---c
Q 025895 83 TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV---S 159 (246)
Q Consensus 83 ~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~ 159 (246)
+.|++||+|+.. ++|++|..++.+ .
T Consensus 76 ~~~~~Gd~V~~~----------------------------------------------------~~~~~~~~~~~~~~~~ 103 (329)
T cd08294 76 SKFPVGTIVVAS----------------------------------------------------FGWRTHTVSDGKDQPD 103 (329)
T ss_pred CCCCCCCEEEee----------------------------------------------------CCeeeEEEECCccccc
Confidence 579999999732 168899999999 9
Q ss_pred eEEcCCCCCc-----hhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHH
Q 025895 160 VAKIDPQAPL-----DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233 (246)
Q Consensus 160 ~~~ip~~~~~-----~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~ 233 (246)
++++|+++++ ..++.+++++.|||+++.+..+++++++|||+|+ |++|++++|+|+.+|+ +|+++++++++.+
T Consensus 104 ~~~iP~~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~-~vi~~~~s~~~~~ 182 (329)
T cd08294 104 LYKLPADLPDDLPPSLALGVLGMPGLTAYFGLLEICKPKAGETVVVNGAAGAVGSLVGQIAKIKGC-KVIGCAGSDDKVA 182 (329)
T ss_pred eEECCccccccCChHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHH
Confidence 9999999882 2234677899999998878888999999999986 9999999999999999 8999999999999
Q ss_pred HHhhcCCC
Q 025895 234 RGMSCVSS 241 (246)
Q Consensus 234 ~~~~lg~~ 241 (246)
.++++|++
T Consensus 183 ~l~~~Ga~ 190 (329)
T cd08294 183 WLKELGFD 190 (329)
T ss_pred HHHHcCCC
Confidence 99999987
No 86
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=99.95 E-value=2e-26 Score=202.75 Aligned_cols=201 Identities=28% Similarity=0.402 Sum_probs=170.5
Q ss_pred ecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCC---CCCCCcccccceEEEEEEcCCCCCccCCCCEEE
Q 025895 16 WEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP---EGLFPCILGHEAAGIVESVGEGVTEVQPGDHVI 92 (246)
Q Consensus 16 ~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~---~~~~p~v~G~e~vG~V~~vG~~~~~~~~Gd~V~ 92 (246)
.+++.++++++.|.|.|+++||+||+.++++|+.|...+.+... ...+|.++|+|++|+|+++|++++++++||+|+
T Consensus 5 ~~~~~~~~l~~~~~p~~~~~ev~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~ 84 (340)
T TIGR00692 5 TKPGYGAELTEVPVPEPGPGEVLIKVLATSICGTDVHIYNWDEWAQSRIKPPQVVGHEVAGEVVGIGPGVEGIKVGDYVS 84 (340)
T ss_pred ccCCCCcEEEECCCCCCCCCeEEEEEEEEEEcccCHHHHcCCCCCCCCCCCCcccccceEEEEEEECCCCCcCCCCCEEE
Confidence 46777799999999999999999999999999999887654321 123567899999999999999999999999999
Q ss_pred eeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCCchhh
Q 025895 93 PCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKV 172 (246)
Q Consensus 93 ~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~a 172 (246)
..+...|+.|..|..+..+.|...+. .|.. . .|+|++|+.++.+.++++|++++++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~------------------~g~~~~~~~~~~~~~~~lp~~~~~~~a 142 (340)
T TIGR00692 85 VETHIVCGKCYACRRGQYHVCQNTKI---FGVD-T------------------DGCFAEYAVVPAQNIWKNPKSIPPEYA 142 (340)
T ss_pred ECCcCCCCCChhhhCcChhhCcCcce---Eeec-C------------------CCcceeEEEeehHHcEECcCCCChHhh
Confidence 99999999999999999999998543 2221 2 248999999999999999999998655
Q ss_pred hhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895 173 CLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS 241 (246)
Q Consensus 173 a~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~ 241 (246)
.++..+.++++++ ....+++++|+|.|+|.+|++++++|+.+|++.|++++++++|.+.++++|++
T Consensus 143 -~~~~~~~~a~~~~--~~~~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~ 208 (340)
T TIGR00692 143 -TIQEPLGNAVHTV--LAGPISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGAT 208 (340)
T ss_pred -hhcchHHHHHHHH--HccCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCc
Confidence 4666788888765 34567899999988899999999999999994488888899999999999986
No 87
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=99.95 E-value=2.7e-26 Score=202.89 Aligned_cols=184 Identities=20% Similarity=0.248 Sum_probs=151.3
Q ss_pred CcccceeeeEeecCCCC------eEEEEe---ecCC-CCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCccccc--ceE
Q 025895 5 GQVITCKAAVAWEPNKP------LVIEDV---QVAP-PQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGH--EAA 72 (246)
Q Consensus 5 ~~~~~~ka~~~~~~~~~------~~~~e~---~~p~-~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~--e~v 72 (246)
.+..+.|++++.+..+. |++++. +.|. +++||||||+.++++|+.|...+.+......+|.++|+ |++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~gevlVkv~a~~inp~~~~~~~~~~~~~~~p~~~G~~~~~~ 83 (348)
T PLN03154 4 GQVVENKQVILKNYIDGIPKETDMEVKLGNKIELKAPKGSGAFLVKNLYLSCDPYMRGRMRDFHDSYLPPFVPGQRIEGF 83 (348)
T ss_pred CccccceEEEEecCCCCCCCcccEEEEeecccCCCCCCCCCeEEEEEEEEccCHHHHHhhhccCCCCCCCcCCCCeeEee
Confidence 45566788888643211 888774 6653 48999999999999999987654332222245889998 889
Q ss_pred EEEEEcCCCCCccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeee
Q 025895 73 GIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQY 152 (246)
Q Consensus 73 G~V~~vG~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~ 152 (246)
|+|..+|++++.|++||+|... ++|+||
T Consensus 84 G~v~~vg~~v~~~~~Gd~V~~~----------------------------------------------------~~~aey 111 (348)
T PLN03154 84 GVSKVVDSDDPNFKPGDLISGI----------------------------------------------------TGWEEY 111 (348)
T ss_pred EEEEEEecCCCCCCCCCEEEec----------------------------------------------------CCcEEE
Confidence 9999999999999999999632 179999
Q ss_pred EEeecCc--eE--EcCCCCCch-hhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEc
Q 025895 153 TVVHDVS--VA--KIDPQAPLD-KVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGID 226 (246)
Q Consensus 153 ~~~~~~~--~~--~ip~~~~~~-~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~ 226 (246)
..++... ++ ++|++++++ +++.++++..|||+++.+...++++++|||+|+ |++|++++|+|+.+|+ +|++++
T Consensus 112 ~~v~~~~~~~~~~~~P~~~~~~~~aa~l~~~~~TA~~al~~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~-~Vi~~~ 190 (348)
T PLN03154 112 SLIRSSDNQLRKIQLQDDIPLSYHLGLLGMAGFTAYAGFYEVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGC-YVVGSA 190 (348)
T ss_pred EEEeccccceEEccCcCCCCHHHHHHHcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEc
Confidence 9998753 54 459999986 688899999999998878888999999999998 9999999999999999 899999
Q ss_pred CChhHHHHHh-hcCCC
Q 025895 227 IDPKKFDRGM-SCVSS 241 (246)
Q Consensus 227 ~~~~~~~~~~-~lg~~ 241 (246)
++++|.+.++ ++|++
T Consensus 191 ~~~~k~~~~~~~lGa~ 206 (348)
T PLN03154 191 GSSQKVDLLKNKLGFD 206 (348)
T ss_pred CCHHHHHHHHHhcCCC
Confidence 9999999987 79997
No 88
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=99.95 E-value=2.6e-26 Score=200.76 Aligned_cols=161 Identities=20% Similarity=0.235 Sum_probs=141.3
Q ss_pred eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCCCCEEEeeCCCCCCC
Q 025895 22 LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRE 101 (246)
Q Consensus 22 ~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~Gd~V~~~~~~~~~~ 101 (246)
++++|.|.|+|++|||+|||.++++|+.|.. +.+.....|.++|.|++|+|+++|+ .|++||+|+..
T Consensus 19 l~~~~~~~p~~~~~evlv~v~a~~~n~~~~~---g~~~~~~~~~i~G~~~~g~v~~~~~---~~~~GdrV~~~------- 85 (325)
T TIGR02825 19 FELKTVELPPLNNGEVLLEALFLSVDPYMRV---AAKRLKEGDTMMGQQVARVVESKNV---ALPKGTIVLAS------- 85 (325)
T ss_pred eEEEeccCCCCCCCcEEEEEEEEecCHHHhc---ccCcCCCCCcEecceEEEEEEeCCC---CCCCCCEEEEe-------
Confidence 8899999999999999999999999997643 3333234578999999999999874 59999999742
Q ss_pred ChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEc----CCCCCchhh-hhcc
Q 025895 102 CKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI----DPQAPLDKV-CLLG 176 (246)
Q Consensus 102 c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i----p~~~~~~~a-a~l~ 176 (246)
++|++|+.++.+.+.++ |++++++++ +.++
T Consensus 86 ---------------------------------------------~~~~~~~~~~~~~~~~l~~~~p~~~~~~~aaa~l~ 120 (325)
T TIGR02825 86 ---------------------------------------------PGWTSHSISDGKDLEKLLTEWPDTLPLSLALGTVG 120 (325)
T ss_pred ---------------------------------------------cCceeeEEechhheEEccccccCCCCHHHHHHhcc
Confidence 15889999998888777 899999987 6788
Q ss_pred ccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895 177 CGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS 241 (246)
Q Consensus 177 ~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~ 241 (246)
+++.|||+++.+..+++++++|||+|+ |++|++++|+|+.+|+ +|++++++++|.+.++++|++
T Consensus 121 ~~~~TA~~~l~~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~-~Vi~~~~s~~~~~~~~~lGa~ 185 (325)
T TIGR02825 121 MPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKVAYLKKLGFD 185 (325)
T ss_pred cHHHHHHHHHHHHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCC
Confidence 899999998888899999999999996 9999999999999999 899999999999999999997
No 89
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=99.95 E-value=4.3e-26 Score=198.45 Aligned_cols=187 Identities=24% Similarity=0.245 Sum_probs=158.3
Q ss_pred eeeeEeecCCC--CeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCC-CCCCcccccceEEEEEEcCCCCCccC
Q 025895 10 CKAAVAWEPNK--PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQ 86 (246)
Q Consensus 10 ~ka~~~~~~~~--~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~-~~~p~v~G~e~vG~V~~vG~~~~~~~ 86 (246)
|||++++++++ +++++|+|.|.+++++|+||+.++++|++|...+.+..+. ..+|.++|||++|+|+++ +++.++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~--~~~~~~ 78 (325)
T cd05280 1 FKALVVEEQDGGVSLFLRTLPLDDLPEGDVLIRVHYSSLNYKDALAATGNGGVTRNYPHTPGIDAAGTVVSS--DDPRFR 78 (325)
T ss_pred CceEEEcccCCCCcceEEeCCCCCCCCCeEEEEEEEeecChHHHHHhcCCCCCCCCCCCccCcccEEEEEEe--CCCCCC
Confidence 79999999886 5999999999999999999999999999999988876542 245789999999999998 456799
Q ss_pred CCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCC
Q 025895 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (246)
Q Consensus 87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~ 166 (246)
+||+|+..+. ..|.. .+ |+|++|+.++.+.++++|++
T Consensus 79 ~Gd~V~~~~~------------------------~~g~~-~~------------------g~~~~~~~v~~~~~~~lp~~ 115 (325)
T cd05280 79 EGDEVLVTGY------------------------DLGMN-TD------------------GGFAEYVRVPADWVVPLPEG 115 (325)
T ss_pred CCCEEEEccc------------------------ccCCC-CC------------------ceeEEEEEEchhhEEECCCC
Confidence 9999986431 01111 12 38999999999999999999
Q ss_pred CCchhhhhccccchhhhhhhhhhCC--CC-CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895 167 APLDKVCLLGCGVPTGLGAVWNTAK--VE-PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS 242 (246)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~l~~~~~--~~-~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~ 242 (246)
+++++++.+++.+.++|.++..... +. .+++|+|+|+ |.+|++++++|+.+|+ +|+++++++++++.++++|++.
T Consensus 116 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~ 194 (325)
T cd05280 116 LSLREAMILGTAGFTAALSVHRLEDNGQTPEDGPVLVTGATGGVGSIAVAILAKLGY-TVVALTGKEEQADYLKSLGASE 194 (325)
T ss_pred CCHHHHHhhHHHHHHHHHHHHHHhhccCCCCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCcE
Confidence 9999999999999999987654433 34 3579999998 9999999999999999 7999999999999999999863
No 90
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.94 E-value=1.5e-25 Score=195.63 Aligned_cols=204 Identities=26% Similarity=0.333 Sum_probs=169.2
Q ss_pred eeeeEeecCC--CCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCC-CCCCcccccceEEEEEEcCCCCCccC
Q 025895 10 CKAAVAWEPN--KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQ 86 (246)
Q Consensus 10 ~ka~~~~~~~--~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~-~~~p~v~G~e~vG~V~~vG~~~~~~~ 86 (246)
|||++++..+ +.+++++.+.|.+++++++||+.++++|+.|+....+..+. ...|.++|||++|+|+++|+.+.+++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~ 80 (336)
T cd08276 1 MKAWRLSGGGGLDNLKLVEEPVPEPGPGEVLVRVHAVSLNYRDLLILNGRYPPPVKDPLIPLSDGAGEVVAVGEGVTRFK 80 (336)
T ss_pred CeEEEEeccCCCcceEEEeccCCCCCCCeEEEEEEEEecCHHHHHHhcCCCCCCCCCCcccccceeEEEEEeCCCCcCCC
Confidence 7899999664 33888899888899999999999999999999988776542 24678999999999999999999999
Q ss_pred CCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCC
Q 025895 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (246)
Q Consensus 87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~ 166 (246)
+||+|.......|+.+.+| .|.... ..|. ...|+|++|+.++.+.++++|++
T Consensus 81 ~Gd~V~~~~~~~~~~~~~~------~~~~~~---~~~~-------------------~~~g~~~~~~~~~~~~~~~lp~~ 132 (336)
T cd08276 81 VGDRVVPTFFPNWLDGPPT------AEDEAS---ALGG-------------------PIDGVLAEYVVLPEEGLVRAPDH 132 (336)
T ss_pred CCCEEEEeccccccccccc------cccccc---cccc-------------------ccCceeeeEEEecHHHeEECCCC
Confidence 9999998776555443332 121110 0111 11348999999999999999999
Q ss_pred CCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS 242 (246)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~ 242 (246)
+++.+++.+.+.+.++|+++.....++++++|+|+|+|.+|++++++++++|+ +|++++.++++++.++++|++.
T Consensus 133 ~~~~~a~~~~~~~~~a~~~l~~~~~~~~g~~vli~g~g~~g~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~ 207 (336)
T cd08276 133 LSFEEAATLPCAGLTAWNALFGLGPLKPGDTVLVQGTGGVSLFALQFAKAAGA-RVIATSSSDEKLERAKALGADH 207 (336)
T ss_pred CCHHHhhhhhHHHHHHHHHHHhhcCCCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCE
Confidence 99999999999999999988777889999999999889999999999999999 8999999999999998888763
No 91
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=99.94 E-value=5.5e-26 Score=200.12 Aligned_cols=184 Identities=24% Similarity=0.258 Sum_probs=157.8
Q ss_pred eeeeEeecCCCC---eEEEEeecCCC-CCCeEEEEEeeeecchhhhhhhcCCCC---------------CCCCCcccccc
Q 025895 10 CKAAVAWEPNKP---LVIEDVQVAPP-QAGEVRIKILFTALCHTDAYTWSGKDP---------------EGLFPCILGHE 70 (246)
Q Consensus 10 ~ka~~~~~~~~~---~~~~e~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~~~~~---------------~~~~p~v~G~e 70 (246)
|||+++++++++ ++++|.+.|.| +++||+||++++++|++|...+.+... ...+|.++|||
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~G~e 80 (350)
T cd08248 1 MKAWQIHSYGGIDSLLLLENARIPVIRKPNQVLIKVHAASVNPIDVLMRSGYGRTLLNKKRKPQSCKYSGIEFPLTLGRD 80 (350)
T ss_pred CceEEecccCCCcceeeecccCCCCCCCCCeEEEEEEEEecCchhHHHHcCCccchhhhhhccccccccCCCCCeeecce
Confidence 789999988876 89999999999 499999999999999999998876421 23568899999
Q ss_pred eEEEEEEcCCCCCccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCccee
Q 025895 71 AAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFS 150 (246)
Q Consensus 71 ~vG~V~~vG~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~ 150 (246)
++|+|+++|+++.++++||+|+..+.. +..|+|+
T Consensus 81 ~~G~v~~vG~~v~~~~~Gd~V~~~~~~----------------------------------------------~~~g~~~ 114 (350)
T cd08248 81 CSGVVVDIGSGVKSFEIGDEVWGAVPP----------------------------------------------WSQGTHA 114 (350)
T ss_pred eEEEEEecCCCcccCCCCCEEEEecCC----------------------------------------------CCCccce
Confidence 999999999999999999999865320 0123899
Q ss_pred eeEEeecCceEEcCCCCCchhhhhccccchhhhhhhhhhCCCC----CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEE
Q 025895 151 QYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVE----PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGI 225 (246)
Q Consensus 151 ~~~~~~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~----~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~ 225 (246)
+|+.++.+.++++|+++++++++.+++.+.++|.++.....+. ++++|+|+|+ |.+|++++++|+.+|+ +|+++
T Consensus 115 ~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~-~v~~~ 193 (350)
T cd08248 115 EYVVVPENEVSKKPKNLSHEEAASLPYAGLTAWSALVNVGGLNPKNAAGKRVLILGGSGGVGTFAIQLLKAWGA-HVTTT 193 (350)
T ss_pred eEEEecHHHeecCCCCCCHHHHhhchhHHHHHHHHHHHhccCCCccCCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEE
Confidence 9999999999999999999999999999999999876666665 4999999996 9999999999999999 78887
Q ss_pred cCChhHHHHHhhcCCC
Q 025895 226 DIDPKKFDRGMSCVSS 241 (246)
Q Consensus 226 ~~~~~~~~~~~~lg~~ 241 (246)
.++ ++.+.++++|++
T Consensus 194 ~~~-~~~~~~~~~g~~ 208 (350)
T cd08248 194 CST-DAIPLVKSLGAD 208 (350)
T ss_pred eCc-chHHHHHHhCCc
Confidence 654 678888888875
No 92
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=99.94 E-value=1e-25 Score=196.68 Aligned_cols=183 Identities=24% Similarity=0.263 Sum_probs=161.1
Q ss_pred ceeeeEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCC-CCCCcccccceEEEEEEcCCCCCcc
Q 025895 9 TCKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEV 85 (246)
Q Consensus 9 ~~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~-~~~p~v~G~e~vG~V~~vG~~~~~~ 85 (246)
||||+++.+.+.+ +++++.+.|.+.+++|+||+.++++|+.|.....+..+. ...|.++|||++|+|+++|+++..+
T Consensus 1 ~m~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vG~~v~~~ 80 (334)
T PTZ00354 1 MMRAVTLKGFGGVDVLKIGESPKPAPKRNDVLIKVSAAGVNRADTLQRQGKYPPPPGSSEILGLEVAGYVEDVGSDVKRF 80 (334)
T ss_pred CcEEEEEEecCCCcceEEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccceeeEEEEEEeCCCCCCC
Confidence 7999999988763 777888888899999999999999999999888775532 2446789999999999999999999
Q ss_pred CCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCC
Q 025895 86 QPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP 165 (246)
Q Consensus 86 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~ 165 (246)
++||+|+... .+ |+|++|++++.+.++++|+
T Consensus 81 ~~Gd~V~~~~-------------------------------~~------------------g~~~~~~~v~~~~~~~ip~ 111 (334)
T PTZ00354 81 KEGDRVMALL-------------------------------PG------------------GGYAEYAVAHKGHVMHIPQ 111 (334)
T ss_pred CCCCEEEEec-------------------------------CC------------------CceeeEEEecHHHcEeCCC
Confidence 9999997432 11 3899999999999999999
Q ss_pred CCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895 166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS 241 (246)
Q Consensus 166 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~ 241 (246)
++++.+++.+.+++.++|+++.....+.++++|+|+|+ |.+|++++++|+.+|+ .++++.+++++.+.++++|++
T Consensus 112 ~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~ 187 (334)
T PTZ00354 112 GYTFEEAAAIPEAFLTAWQLLKKHGDVKKGQSVLIHAGASGVGTAAAQLAEKYGA-ATIITTSSEEKVDFCKKLAAI 187 (334)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCc
Confidence 99999999999999999998877788999999999997 9999999999999999 777788999999999989886
No 93
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=99.94 E-value=1.4e-25 Score=196.02 Aligned_cols=180 Identities=27% Similarity=0.256 Sum_probs=159.3
Q ss_pred ceeeeEeecCCC----CeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCC-CCCCcccccceEEEEEEcCCCCC
Q 025895 9 TCKAAVAWEPNK----PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVT 83 (246)
Q Consensus 9 ~~ka~~~~~~~~----~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~-~~~p~v~G~e~vG~V~~vG~~~~ 83 (246)
.|||+++++++. ++++++++.|.+.++||+||+.++++|+.|+....+.+.. ..+|.++|||++|+|+++|++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~~~~~p~~~g~e~~G~v~~vG~~v~ 80 (329)
T cd08250 1 SFRKLVVHRLSPNFREATSIVDVPVPLPGPGEVLVKNRFVGINASDINFTAGRYDPGVKPPFDCGFEGVGEVVAVGEGVT 80 (329)
T ss_pred CceEEEeccCCCCcccCceEEecCCCCCCCCEEEEEEEEEecCHHHHHHHhCCCCCCCCCCcccCceeEEEEEEECCCCC
Confidence 489999997665 5899999999999999999999999999999988776542 45788999999999999999999
Q ss_pred ccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEc
Q 025895 84 EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI 163 (246)
Q Consensus 84 ~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i 163 (246)
.+++||+|+... . |+|++|+.++.+.++++
T Consensus 81 ~~~~Gd~V~~~~--------------------------------~------------------g~~~s~~~v~~~~~~~i 110 (329)
T cd08250 81 DFKVGDAVATMS--------------------------------F------------------GAFAEYQVVPARHAVPV 110 (329)
T ss_pred CCCCCCEEEEec--------------------------------C------------------cceeEEEEechHHeEEC
Confidence 999999998542 1 28999999999999999
Q ss_pred CCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895 164 DPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS 241 (246)
Q Consensus 164 p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~ 241 (246)
|++. .+++.+++++.++|+++.+...+.++++|+|+|+ |.+|++++++++..|+ +|+++.+++++.+.++++|++
T Consensus 111 p~~~--~~~a~l~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~ 186 (329)
T cd08250 111 PELK--PEVLPLLVSGLTASIALEEVGEMKSGETVLVTAAAGGTGQFAVQLAKLAGC-HVIGTCSSDEKAEFLKSLGCD 186 (329)
T ss_pred CCCc--chhhhcccHHHHHHHHHHHhcCCCCCCEEEEEeCccHHHHHHHHHHHHcCC-eEEEEeCcHHHHHHHHHcCCc
Confidence 9973 4667788899999998877788999999999986 9999999999999999 899999999999999999875
No 94
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=99.94 E-value=1.6e-25 Score=189.16 Aligned_cols=179 Identities=35% Similarity=0.501 Sum_probs=157.3
Q ss_pred eEEEEEeeeecchhhhhhhcCCCC-CCCCCcccccceEEEEEEcCCCCCccCCCCEEEeeCCCCCCCChhhhCCCCCCCC
Q 025895 36 EVRIKILFTALCHTDAYTWSGKDP-EGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCG 114 (246)
Q Consensus 36 eVlVkv~~~~i~~~D~~~~~~~~~-~~~~p~v~G~e~vG~V~~vG~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~ 114 (246)
||+||+.++++|+.|...+.+..+ ...+|.++|||++|+|+++|+++..|++||+|+..+...|+.|.+|.. .|.
T Consensus 1 ~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~G~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~----~~~ 76 (271)
T cd05188 1 EVLVRVEAAGLCGTDLHIRRGGYPPPPKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVVLPNLGCGTCELCRE----LCP 76 (271)
T ss_pred CeEEEEEEEEecchhHHHHcCCCCcCCCCCcccccccEEEEEEECCCCCcCCCCCEEEEcCCCCCCCCHHHHh----hCC
Confidence 689999999999999999888764 345678999999999999999999999999999999999999999986 666
Q ss_pred CccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCCchhhhhccccchhhhhhhhhhCCCCC
Q 025895 115 KVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEP 194 (246)
Q Consensus 115 ~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~ 194 (246)
.... .+ ....|+|++|+.++.+.++++|+++++++++.+++++.++|+++.....+.+
T Consensus 77 ~~~~---~~-------------------~~~~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~~a~~~l~~~~~~~~ 134 (271)
T cd05188 77 GGGI---LG-------------------EGLDGGFAEYVVVPADNLVPLPDGLSLEEAALLPEPLATAYHALRRAGVLKP 134 (271)
T ss_pred CCCE---ec-------------------cccCCcceEEEEechHHeEECCCCCCHHHhhHhcCHHHHHHHHHHhccCCCC
Confidence 5442 11 1123489999999999999999999999999999999999998877777789
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS 241 (246)
Q Consensus 195 ~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~ 241 (246)
+++|||+|+|.+|++++++++..|. +|+++++++++.+.++++|++
T Consensus 135 ~~~vli~g~~~~G~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~ 180 (271)
T cd05188 135 GDTVLVLGAGGVGLLAAQLAKAAGA-RVIVTDRSDEKLELAKELGAD 180 (271)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHhCCc
Confidence 9999999996699999999999998 999999999999999988876
No 95
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=99.94 E-value=2.2e-25 Score=194.38 Aligned_cols=187 Identities=19% Similarity=0.204 Sum_probs=154.3
Q ss_pred eeeeEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCC-CCCCCCcccccceEEEEEEcCCCCCccC
Q 025895 10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD-PEGLFPCILGHEAAGIVESVGEGVTEVQ 86 (246)
Q Consensus 10 ~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~-~~~~~p~v~G~e~vG~V~~vG~~~~~~~ 86 (246)
|||+++.+.+++ +.+++.|.|.|.++||+||+.++++|+.|.....+.. ....+|.++|||++|+|+++| +.+++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~V~~~~--~~~~~ 78 (326)
T cd08289 1 FQALVVEKDEDDVSVSVKNLTLDDLPEGDVLIRVAYSSVNYKDGLASIPGGKIVKRYPFIPGIDLAGTVVESN--DPRFK 78 (326)
T ss_pred CeeEEEeccCCcceeEEEEccCCCCCCCeEEEEEEEEecChHHhhhhcCCccccCCCCcCcccceeEEEEEcC--CCCCC
Confidence 789999988774 8899999999999999999999999999987654321 122457899999999999964 46799
Q ss_pred CCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCC
Q 025895 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (246)
Q Consensus 87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~ 166 (246)
+||+|+..+.. .|.. .+ |+|++|+.++.+.++++|++
T Consensus 79 ~Gd~V~~~~~~------------------------~~~~-~~------------------g~~~~~~~v~~~~~~~~p~~ 115 (326)
T cd08289 79 PGDEVIVTSYD------------------------LGVS-HH------------------GGYSEYARVPAEWVVPLPKG 115 (326)
T ss_pred CCCEEEEcccc------------------------cCCC-CC------------------CcceeEEEEcHHHeEECCCC
Confidence 99999865320 1111 22 38999999999999999999
Q ss_pred CCchhhhhccccchhhhhhhhhh--CC-CCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895 167 APLDKVCLLGCGVPTGLGAVWNT--AK-VEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS 242 (246)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~l~~~--~~-~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~ 242 (246)
+++++++.+++...|+|.++... .. ...+++|||+|+ |.+|++++++|+.+|+ +|+++++++++.+.++++|++.
T Consensus 116 ~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~ 194 (326)
T cd08289 116 LTLKEAMILGTAGFTAALSIHRLEENGLTPEQGPVLVTGATGGVGSLAVSILAKLGY-EVVASTGKADAADYLKKLGAKE 194 (326)
T ss_pred CCHHHHhhhhhHHHHHHHHHHHHHhcCCCCCCCEEEEEcCCchHHHHHHHHHHHCCC-eEEEEecCHHHHHHHHHcCCCE
Confidence 99999999998898998876432 22 344789999998 9999999999999999 8999999999999999999863
No 96
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.94 E-value=2.9e-25 Score=192.38 Aligned_cols=187 Identities=27% Similarity=0.396 Sum_probs=160.8
Q ss_pred eeeeEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCC
Q 025895 10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQP 87 (246)
Q Consensus 10 ~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~ 87 (246)
||++++...+.+ +++.+.+.|.+++++|+||+.++++|+.|+..+.+..+....|.++|||++|+|+++|+ ..+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~g~e~~G~v~~vG~--~~~~~ 78 (320)
T cd08243 1 MKAIVIEQPGGPEVLKLREIPIPEPKPGWVLIRVKAFGLNRSEIFTRQGHSPSVKFPRVLGIEAVGEVEEAPG--GTFTP 78 (320)
T ss_pred CeEEEEcCCCCccceEEeecCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCccccceeEEEEEEecC--CCCCC
Confidence 688888876642 67788888889999999999999999999998887665445678999999999999995 57999
Q ss_pred CCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCC
Q 025895 88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA 167 (246)
Q Consensus 88 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~ 167 (246)
||+|+..... .+.. . .|+|++|+.++...++++|+++
T Consensus 79 Gd~V~~~~~~------------------------~~~~-~------------------~g~~~~~~~~~~~~~~~ip~~~ 115 (320)
T cd08243 79 GQRVATAMGG------------------------MGRT-F------------------DGSYAEYTLVPNEQVYAIDSDL 115 (320)
T ss_pred CCEEEEecCC------------------------CCCC-C------------------CcccceEEEcCHHHcEeCCCCC
Confidence 9999865320 0000 1 2389999999999999999999
Q ss_pred CchhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895 168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS 242 (246)
Q Consensus 168 ~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~ 242 (246)
++++++.+++++.++|.++.....+.++++|+|+|+ |.+|++++++|+.+|+ +|+++..++++.+.++++|++.
T Consensus 116 ~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~ 190 (320)
T cd08243 116 SWAELAALPETYYTAWGSLFRSLGLQPGDTLLIRGGTSSVGLAALKLAKALGA-TVTATTRSPERAALLKELGADE 190 (320)
T ss_pred CHHHHHhcchHHHHHHHHHHHhcCCCCCCEEEEEcCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCcE
Confidence 999999999999999998877788999999999998 9999999999999999 7999999999999999999853
No 97
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.94 E-value=3e-25 Score=191.61 Aligned_cols=177 Identities=19% Similarity=0.168 Sum_probs=154.0
Q ss_pred eeeeEeecCC-CCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCCC
Q 025895 10 CKAAVAWEPN-KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG 88 (246)
Q Consensus 10 ~ka~~~~~~~-~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~G 88 (246)
||++++.+++ ..+++++.|.|.++++||+||+.++++|+.|....... ..|.++|||++|+|+++|+++..|++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~i~~~d~~~~~~~----~~~~~~g~e~~G~v~~~G~~v~~~~~G 76 (305)
T cd08270 1 MRALVVDPDAPLRLRLGEVPDPQPAPHEALVRVAAISLNRGELKFAAER----PDGAVPGWDAAGVVERAAADGSGPAVG 76 (305)
T ss_pred CeEEEEccCCCceeEEEecCCCCCCCCEEEEEEEEEecCHHHHHhhccC----CCCCcccceeEEEEEEeCCCCCCCCCC
Confidence 6889888754 12777799999999999999999999999998876521 235789999999999999999999999
Q ss_pred CEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCC
Q 025895 89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP 168 (246)
Q Consensus 89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~ 168 (246)
|+|+... .+ |+|++|+.++.+.++++|++++
T Consensus 77 d~V~~~~-------------------------------~~------------------g~~~~~~~v~~~~~~~ip~~~~ 107 (305)
T cd08270 77 ARVVGLG-------------------------------AM------------------GAWAELVAVPTGWLAVLPDGVS 107 (305)
T ss_pred CEEEEec-------------------------------CC------------------cceeeEEEEchHHeEECCCCCC
Confidence 9997532 12 3899999999999999999999
Q ss_pred chhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895 169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS 241 (246)
Q Consensus 169 ~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~ 241 (246)
+++++.+++.+.+||+++...... ++++|+|+|+ |.+|++++++++..|+ +++++++++++.+.++++|++
T Consensus 108 ~~~a~~~~~~~~ta~~~~~~~~~~-~~~~vli~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~ 179 (305)
T cd08270 108 FAQAATLPVAGVTALRALRRGGPL-LGRRVLVTGASGGVGRFAVQLAALAGA-HVVAVVGSPARAEGLRELGAA 179 (305)
T ss_pred HHHHHHhHhHHHHHHHHHHHhCCC-CCCEEEEECCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCc
Confidence 999999999999999987655544 5999999998 9999999999999999 899999999999999999986
No 98
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=99.94 E-value=2.6e-25 Score=194.66 Aligned_cols=185 Identities=21% Similarity=0.241 Sum_probs=160.7
Q ss_pred eeeeEeecCCCC-----eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCc
Q 025895 10 CKAAVAWEPNKP-----LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTE 84 (246)
Q Consensus 10 ~ka~~~~~~~~~-----~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~ 84 (246)
|||+++.+++++ ++++++|.|.+.+++|+||+.++++|+.|+..+.+..+...+|.++|||++|+|+++|+++..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~ 80 (336)
T cd08252 1 MKAIGFTQPLPITDPDSLIDIELPKPVPGGRDLLVRVEAVSVNPVDTKVRAGGAPVPGQPKILGWDASGVVEAVGSEVTL 80 (336)
T ss_pred CceEEecCCCCCCcccceeEccCCCCCCCCCEEEEEEEEEEcCHHHHHHHcCCCCCCCCCcccccceEEEEEEcCCCCCC
Confidence 589999988874 666778888889999999999999999999988776543346778999999999999999999
Q ss_pred cCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcC
Q 025895 85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID 164 (246)
Q Consensus 85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip 164 (246)
+++||+|...... ..+ |+|++|+.++...++++|
T Consensus 81 ~~~Gd~V~~~~~~----------------------------~~~------------------g~~~~~~~v~~~~~~~ip 114 (336)
T cd08252 81 FKVGDEVYYAGDI----------------------------TRP------------------GSNAEYQLVDERIVGHKP 114 (336)
T ss_pred CCCCCEEEEcCCC----------------------------CCC------------------ccceEEEEEchHHeeeCC
Confidence 9999999853210 012 389999999999999999
Q ss_pred CCCCchhhhhccccchhhhhhhhhhCCCCC-----CCEEEEECC-CHHHHHHHHHHHHcC-CCeEEEEcCChhHHHHHhh
Q 025895 165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEP-----GSIVAVFGL-GTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDRGMS 237 (246)
Q Consensus 165 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~-----~~~VlI~Ga-g~~G~~ai~~a~~~G-~~~vi~~~~~~~~~~~~~~ 237 (246)
+++++++++.+++.+.++|.++.+...+.+ +++|+|+|+ |.+|++++++|+.+| + +|+++++++++.+.+++
T Consensus 115 ~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~g~~g~vg~~~~~~a~~~G~~-~v~~~~~~~~~~~~~~~ 193 (336)
T cd08252 115 KSLSFAEAAALPLTSLTAWEALFDRLGISEDAENEGKTLLIIGGAGGVGSIAIQLAKQLTGL-TVIATASRPESIAWVKE 193 (336)
T ss_pred CCCCHHHhhhhhhHHHHHHHHHHHhcCCCCCcCCCCCEEEEEcCCchHHHHHHHHHHHcCCc-EEEEEcCChhhHHHHHh
Confidence 999999999999999999998777777777 999999986 999999999999999 7 89999999999999999
Q ss_pred cCCC
Q 025895 238 CVSS 241 (246)
Q Consensus 238 lg~~ 241 (246)
+|++
T Consensus 194 ~g~~ 197 (336)
T cd08252 194 LGAD 197 (336)
T ss_pred cCCc
Confidence 9985
No 99
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=99.94 E-value=7.3e-26 Score=199.18 Aligned_cols=188 Identities=31% Similarity=0.345 Sum_probs=158.7
Q ss_pred eeeeEeecCC-CCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCCC
Q 025895 10 CKAAVAWEPN-KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG 88 (246)
Q Consensus 10 ~ka~~~~~~~-~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~G 88 (246)
|||+++++++ ..++++++|.|.++++||+||++++++|+.|+....+.. ....|.++|||++|+|+.+|++++.+++|
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~-~~~~~~~~g~e~~G~v~~vG~~v~~~~~G 79 (339)
T cd08249 1 QKAAVLTGPGGGLLVVVDVPVPKPGPDEVLVKVKAVALNPVDWKHQDYGF-IPSYPAILGCDFAGTVVEVGSGVTRFKVG 79 (339)
T ss_pred CceEEeccCCCCcccccCCCCCCCCCCEEEEEEEEEEcCchheeeeeccc-ccCCCceeeeeeeEEEEEeCCCcCcCCCC
Confidence 7899999884 338999999999999999999999999999988775543 12356789999999999999999999999
Q ss_pred CEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCC
Q 025895 89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP 168 (246)
Q Consensus 89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~ 168 (246)
|+|+..+...|+ +.. . .|+|++|+.++.+.++++|++++
T Consensus 80 d~V~~~~~~~~~----------------------~~~-~------------------~g~~~~~~~v~~~~~~~ip~~~~ 118 (339)
T cd08249 80 DRVAGFVHGGNP----------------------NDP-R------------------NGAFQEYVVADADLTAKIPDNIS 118 (339)
T ss_pred CEEEEEeccccC----------------------CCC-C------------------CCcccceEEechhheEECCCCCC
Confidence 999876532111 000 2 23899999999999999999999
Q ss_pred chhhhhccccchhhhhhhhhhCCC----------CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895 169 LDKVCLLGCGVPTGLGAVWNTAKV----------EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS 237 (246)
Q Consensus 169 ~~~aa~l~~~~~ta~~~l~~~~~~----------~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~ 237 (246)
+++++.+++.+.++|+++.+...+ +++++|+|+|+ |.+|++++++|+.+|+ +|+++. +++|.+.+++
T Consensus 119 ~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~~~~~~~~~vlI~ga~g~vg~~~~~~a~~~G~-~v~~~~-~~~~~~~~~~ 196 (339)
T cd08249 119 FEEAATLPVGLVTAALALFQKLGLPLPPPKPSPASKGKPVLIWGGSSSVGTLAIQLAKLAGY-KVITTA-SPKNFDLVKS 196 (339)
T ss_pred HHHceecchHHHHHHHHHhccccCCCCCCCCCCCCCCCEEEEEcChhHHHHHHHHHHHHcCC-eEEEEE-CcccHHHHHh
Confidence 999999999999999987665544 78999999998 8999999999999999 788876 5688899999
Q ss_pred cCCC
Q 025895 238 CVSS 241 (246)
Q Consensus 238 lg~~ 241 (246)
+|++
T Consensus 197 ~g~~ 200 (339)
T cd08249 197 LGAD 200 (339)
T ss_pred cCCC
Confidence 9986
No 100
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=99.94 E-value=4.4e-25 Score=191.98 Aligned_cols=183 Identities=28% Similarity=0.356 Sum_probs=158.8
Q ss_pred eeeeEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCC---CCCCcccccceEEEEEEcCCCCCc
Q 025895 10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE---GLFPCILGHEAAGIVESVGEGVTE 84 (246)
Q Consensus 10 ~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~---~~~p~v~G~e~vG~V~~vG~~~~~ 84 (246)
|||+++++++.+ +++.+.+.|.+.+++|+||+.++++|+.|...+.+..+. ...|.++|||++|+|+++|+++..
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~g~e~~G~v~~~G~~v~~ 80 (324)
T cd08244 1 MRAIRLHEFGPPEVLVPEDVPDPVPGPGQVRIAVAAAGVHFVDTQLRSGWGPGPFPPELPYVPGGEVAGVVDAVGPGVDP 80 (324)
T ss_pred CeEEEEcCCCCccceEEeccCCCCCCCCEEEEEEEEEeCCHHHHHHhCCCCCCCCCCCCCcCCccceEEEEEEeCCCCCC
Confidence 689999876653 677788888889999999999999999999888775432 345788999999999999999999
Q ss_pred cCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcC
Q 025895 85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID 164 (246)
Q Consensus 85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip 164 (246)
+++||+|+.... ..+| +|++|+.++...++++|
T Consensus 81 ~~~Gd~V~~~~~-----------------------------~~~g------------------~~~~~~~v~~~~~~~lp 113 (324)
T cd08244 81 AWLGRRVVAHTG-----------------------------RAGG------------------GYAELAVADVDSLHPVP 113 (324)
T ss_pred CCCCCEEEEccC-----------------------------CCCc------------------eeeEEEEEchHHeEeCC
Confidence 999999985421 0123 89999999999999999
Q ss_pred CCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895 165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS 241 (246)
Q Consensus 165 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~ 241 (246)
+++++++++.+++.+.++|. +.....++++++|+|+|+ |.+|++++++|+.+|+ +|+++++++++.+.++++|++
T Consensus 114 ~~~~~~~a~~~~~~~~ta~~-~~~~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g~-~v~~~~~~~~~~~~~~~~g~~ 189 (324)
T cd08244 114 DGLDLEAAVAVVHDGRTALG-LLDLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGA-TVVGAAGGPAKTALVRALGAD 189 (324)
T ss_pred CCCCHHHHhhhcchHHHHHH-HHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCC
Confidence 99999999999999999954 667788999999999986 9999999999999999 899999999999999989886
No 101
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=99.94 E-value=6e-25 Score=191.49 Aligned_cols=185 Identities=26% Similarity=0.263 Sum_probs=155.2
Q ss_pred eeeEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCC-CCCCcccccceEEEEEEcCCCCCccCC
Q 025895 11 KAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQP 87 (246)
Q Consensus 11 ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~-~~~p~v~G~e~vG~V~~vG~~~~~~~~ 87 (246)
||++++..+.+ ++++|+|.|.+.+++|+||+.++++|+.|...+.+.++. ...|.++|||++|+|+. +++..|++
T Consensus 1 ~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~--~~~~~~~~ 78 (323)
T TIGR02823 1 KALVVEKEDGKVSAQVETLDLSDLPEGDVLIKVAYSSLNYKDALAITGKGGVVRSYPMIPGIDAAGTVVS--SEDPRFRE 78 (323)
T ss_pred CeEEEccCCCCcceeEeecCCCCCCCCeEEEEEEEEEcCHHHHHHHcCCCCCCCCCCccceeeeEEEEEe--cCCCCCCC
Confidence 68888877764 689999999999999999999999999999988886532 35588999999999998 55678999
Q ss_pred CCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCC
Q 025895 88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA 167 (246)
Q Consensus 88 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~ 167 (246)
||+|+..+.. .|.. .+ |+|++|+.++.+.++++|+++
T Consensus 79 Gd~V~~~~~~------------------------~~~~-~~------------------g~~~~~~~~~~~~~~~iP~~~ 115 (323)
T TIGR02823 79 GDEVIVTGYG------------------------LGVS-HD------------------GGYSQYARVPADWLVPLPEGL 115 (323)
T ss_pred CCEEEEccCC------------------------CCCC-CC------------------ccceEEEEEchhheEECCCCC
Confidence 9999865321 0110 12 389999999999999999999
Q ss_pred Cchhhhhccccchhhhhhhhhh--CCCCCCC-EEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895 168 PLDKVCLLGCGVPTGLGAVWNT--AKVEPGS-IVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS 241 (246)
Q Consensus 168 ~~~~aa~l~~~~~ta~~~l~~~--~~~~~~~-~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~ 241 (246)
++++++.+++.+.+++.++... ..+.+++ +|+|+|+ |.+|++++++|+.+|+ +++++..++++.+.++++|++
T Consensus 116 ~~~~aa~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~la~~~G~-~vi~~~~~~~~~~~~~~~g~~ 192 (323)
T TIGR02823 116 SLREAMALGTAGFTAALSVMALERNGLTPEDGPVLVTGATGGVGSLAVAILSKLGY-EVVASTGKAEEEDYLKELGAS 192 (323)
T ss_pred CHHHhhhhhhhHHHHHHHHHHhhhcCCCCCCceEEEEcCCcHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHhcCCc
Confidence 9999999998888888765332 3478888 9999998 9999999999999999 788888888888999999986
No 102
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=99.93 E-value=8.8e-25 Score=190.37 Aligned_cols=186 Identities=20% Similarity=0.212 Sum_probs=155.4
Q ss_pred eeeeEeecCCC--CeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCC-CCCCcccccceEEEEEEcCCCCCccC
Q 025895 10 CKAAVAWEPNK--PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQ 86 (246)
Q Consensus 10 ~ka~~~~~~~~--~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~-~~~p~v~G~e~vG~V~~vG~~~~~~~ 86 (246)
|||+++++++. .++++|+|.|.|++++|+||+.++++|+.|...+.+.... ..+|.++|||++|+|++ +++.+++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~--~~~~~~~ 78 (324)
T cd08288 1 FKALVLEKDDGGTSAELRELDESDLPEGDVTVEVHYSTLNYKDGLAITGKGGIVRTFPLVPGIDLAGTVVE--SSSPRFK 78 (324)
T ss_pred CeeEEEeccCCCcceEEEECCCCCCCCCeEEEEEEEEecCHHHHHHhcCCccccCCCCCccccceEEEEEe--CCCCCCC
Confidence 78999998875 3899999999999999999999999999999888776432 24578899999999999 6777899
Q ss_pred CCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCC
Q 025895 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (246)
Q Consensus 87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~ 166 (246)
+||+|+..... + | .+..|+|++|+.++.+.++++|++
T Consensus 79 ~Gd~V~~~~~~--------------~----------~-------------------~~~~g~~~~~~~v~~~~~~~lp~~ 115 (324)
T cd08288 79 PGDRVVLTGWG--------------V----------G-------------------ERHWGGYAQRARVKADWLVPLPEG 115 (324)
T ss_pred CCCEEEECCcc--------------C----------C-------------------CCCCCcceeEEEEchHHeeeCCCC
Confidence 99999864210 0 0 001238999999999999999999
Q ss_pred CCchhhhhccccchhhhhhhh--hhCCCC-CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895 167 APLDKVCLLGCGVPTGLGAVW--NTAKVE-PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS 241 (246)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~l~--~~~~~~-~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~ 241 (246)
+++++++.+++.+.+++.++. ...... ++++|+|+|+ |.+|++++|+|+.+|+ ++++++.+++|.+.++++|++
T Consensus 116 ~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~ga~g~vg~~~~~~A~~~G~-~vi~~~~~~~~~~~~~~~g~~ 193 (324)
T cd08288 116 LSARQAMAIGTAGFTAMLCVMALEDHGVTPGDGPVLVTGAAGGVGSVAVALLARLGY-EVVASTGRPEEADYLRSLGAS 193 (324)
T ss_pred CCHHHHhhhhhHHHHHHHHHHHHhhcCcCCCCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHhcCCC
Confidence 999999999988888876543 123444 6789999998 9999999999999999 899999999999999999986
No 103
>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.93 E-value=2.4e-24 Score=188.05 Aligned_cols=181 Identities=24% Similarity=0.295 Sum_probs=160.1
Q ss_pred eeeeEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCC-CCCCcccccceEEEEEEcCCCCCccC
Q 025895 10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQ 86 (246)
Q Consensus 10 ~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~-~~~p~v~G~e~vG~V~~vG~~~~~~~ 86 (246)
.||+++...+.+ +++++.+.|.|.+++|+||+.++++|+.|..++.+.... ..+|.++|||++|+|+.+|+++..++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~vG~~v~~~~ 80 (331)
T cd08273 1 NREVVVTRRGGPEVLKVVEADLPEPAAGEVVVKVEASGVSFADVQMRRGLYPDQPPLPFTPGYDLVGRVDALGSGVTGFE 80 (331)
T ss_pred CeeEEEccCCCcccEEEeccCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccccceEEEEEEeCCCCccCC
Confidence 378899987754 888999999999999999999999999999988776532 24688999999999999999999999
Q ss_pred CCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCC
Q 025895 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (246)
Q Consensus 87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~ 166 (246)
+||+|...+. . |+|++|+.++.+.++++|++
T Consensus 81 ~Gd~V~~~~~-------------------------------~------------------g~~~~~~~~~~~~~~~~p~~ 111 (331)
T cd08273 81 VGDRVAALTR-------------------------------V------------------GGNAEYINLDAKYLVPVPEG 111 (331)
T ss_pred CCCEEEEeCC-------------------------------C------------------cceeeEEEechHHeEECCCC
Confidence 9999986421 1 28999999999999999999
Q ss_pred CCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS 241 (246)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~ 241 (246)
+++.+++.+++++.++|.++.+...+.++++|+|+|+ |.+|++++++++.+|+ +|+++.. +++.+.++++|++
T Consensus 112 ~~~~~a~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~-~v~~~~~-~~~~~~~~~~g~~ 185 (331)
T cd08273 112 VDAAEAVCLVLNYVTAYQMLHRAAKVLTGQRVLIHGASGGVGQALLELALLAGA-EVYGTAS-ERNHAALRELGAT 185 (331)
T ss_pred CCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHHHHHHHcCC-EEEEEeC-HHHHHHHHHcCCe
Confidence 9999999999999999998877788999999999997 9999999999999999 8888887 8888998888854
No 104
>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.93 E-value=5.8e-24 Score=184.55 Aligned_cols=184 Identities=28% Similarity=0.379 Sum_probs=160.3
Q ss_pred eeeeEeecCC--CCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCC
Q 025895 10 CKAAVAWEPN--KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQP 87 (246)
Q Consensus 10 ~ka~~~~~~~--~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~ 87 (246)
|||+++.+++ +.++++++|.|.+.+++|+||+.++++|+.|.....+......+|.++|||++|+|+.+|+++..+++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~~ 80 (325)
T cd08271 1 MKAWVLPKPGAALQLTLEEIEIPGPGAGEVLVKVHAAGLNPVDWKVIAWGPPAWSYPHVPGVDGAGVVVAVGAKVTGWKV 80 (325)
T ss_pred CeeEEEccCCCcceeEEeccCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCcccccceEEEEEEeCCCCCcCCC
Confidence 7999999988 34999999999999999999999999999999887776543344778999999999999999999999
Q ss_pred CCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCC
Q 025895 88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA 167 (246)
Q Consensus 88 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~ 167 (246)
||+|...+... .+ ++|++|+.++.+.++++|+++
T Consensus 81 Gd~V~~~~~~~----------------------------~~------------------~~~~s~~~~~~~~~~~ip~~~ 114 (325)
T cd08271 81 GDRVAYHASLA----------------------------RG------------------GSFAEYTVVDARAVLPLPDSL 114 (325)
T ss_pred CCEEEeccCCC----------------------------CC------------------ccceeEEEeCHHHeEECCCCC
Confidence 99998653200 12 389999999999999999999
Q ss_pred CchhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895 168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS 241 (246)
Q Consensus 168 ~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~ 241 (246)
++.+++.+.+.+.++|.++.+...+.++++|+|+|+ |.+|++++++++..|+ .++++. ++++.+.+.++|++
T Consensus 115 ~~~~~a~~~~~~~~a~~~~~~~~~~~~g~~vlI~g~~~~ig~~~~~~a~~~g~-~v~~~~-~~~~~~~~~~~g~~ 187 (325)
T cd08271 115 SFEEAAALPCAGLTAYQALFKKLRIEAGRTILITGGAGGVGSFAVQLAKRAGL-RVITTC-SKRNFEYVKSLGAD 187 (325)
T ss_pred CHHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEE-cHHHHHHHHHcCCc
Confidence 999999999999999998878888999999999998 8999999999999999 777776 67788888888875
No 105
>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast. This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi
Probab=99.93 E-value=4.8e-24 Score=188.33 Aligned_cols=187 Identities=22% Similarity=0.252 Sum_probs=153.7
Q ss_pred eeeeEeecCCCCeEEEEeecCCC---CCCeEEEEEeeeecchhhhhhhcCCCCCC-CCCcccccceEEEEEEcCCCCC-c
Q 025895 10 CKAAVAWEPNKPLVIEDVQVAPP---QAGEVRIKILFTALCHTDAYTWSGKDPEG-LFPCILGHEAAGIVESVGEGVT-E 84 (246)
Q Consensus 10 ~ka~~~~~~~~~~~~~e~~~p~~---~~~eVlVkv~~~~i~~~D~~~~~~~~~~~-~~p~v~G~e~vG~V~~vG~~~~-~ 84 (246)
.|+++++++++++++++++.|.| ++++|+||+.++++|++|...+.+..... ..|.++|+|++|+|+++|+++. .
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~I~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~ 80 (352)
T cd08247 1 YKALTFKNNTSPLTITTIKLPLPNCYKDNEIVVKVHAAALNPVDLKLYNSYTFHFKVKEKGLGRDYSGVIVKVGSNVASE 80 (352)
T ss_pred CceEEEecCCCcceeeccCCCCCCCCCCCeEEEEEEEEecChHhHHHhcccccccccCCCccCceeEEEEEEeCcccccC
Confidence 37899999998888888887776 89999999999999999988775432211 2377899999999999999998 8
Q ss_pred cCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecC----ce
Q 025895 85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV----SV 160 (246)
Q Consensus 85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~ 160 (246)
|++||+|+......|+ . .|+|++|++++.. .+
T Consensus 81 ~~~Gd~V~~~~~~~~~--------------------------~------------------~g~~~~~~~v~~~~~~~~~ 116 (352)
T cd08247 81 WKVGDEVCGIYPHPYG--------------------------G------------------QGTLSQYLLVDPKKDKKSI 116 (352)
T ss_pred CCCCCEEEEeecCCCC--------------------------C------------------CceeeEEEEEcccccccee
Confidence 9999999865321100 1 2389999999987 79
Q ss_pred EEcCCCCCchhhhhccccchhhhhhhhhhC-CCCCCCEEEEECC-CHHHHHHHHHHHHcCC-CeEEEEcCChhHHHHHhh
Q 025895 161 AKIDPQAPLDKVCLLGCGVPTGLGAVWNTA-KVEPGSIVAVFGL-GTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRGMS 237 (246)
Q Consensus 161 ~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~-~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~-~~vi~~~~~~~~~~~~~~ 237 (246)
+++|+++++.+++.+++.+.++|+++.... .++++++|+|+|+ +.+|++++++|+.+|. +.++++. ++++.+.+++
T Consensus 117 ~~lP~~l~~~~aa~~~~~~~ta~~~l~~~~~~~~~g~~vlI~ga~~~vg~~~~~~a~~~~~~~~v~~~~-~~~~~~~~~~ 195 (352)
T cd08247 117 TRKPENISLEEAAAWPLVLGTAYQILEDLGQKLGPDSKVLVLGGSTSVGRFAIQLAKNHYNIGTVVGTC-SSRSAELNKK 195 (352)
T ss_pred EECCCCCCHHHHHHhHHHHHHHHHHHHHhhhccCCCCeEEEECCCchHHHHHHHHHHhcCCcceEEEEe-ChhHHHHHHH
Confidence 999999999999999999999999876666 7999999999988 7999999999999854 3567765 4555667788
Q ss_pred cCCC
Q 025895 238 CVSS 241 (246)
Q Consensus 238 lg~~ 241 (246)
+|++
T Consensus 196 ~g~~ 199 (352)
T cd08247 196 LGAD 199 (352)
T ss_pred hCCC
Confidence 8886
No 106
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=99.92 E-value=4.7e-24 Score=184.05 Aligned_cols=182 Identities=29% Similarity=0.341 Sum_probs=159.8
Q ss_pred eeeeEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCC-CCCCcccccceEEEEEEcCCCCCccC
Q 025895 10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQ 86 (246)
Q Consensus 10 ~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~-~~~p~v~G~e~vG~V~~vG~~~~~~~ 86 (246)
||++++.+.+.+ +++.+.+.|.+.+++|+||+.++++|+.|+....+.++. ..+|.++|||++|+|+++|+++..++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vg~~~~~~~ 80 (323)
T cd05276 1 MKAIVIKEPGGPEVLELGEVPKPAPGPGEVLIRVAAAGVNRADLLQRQGLYPPPPGASDILGLEVAGVVVAVGPGVTGWK 80 (323)
T ss_pred CeEEEEecCCCcccceEEecCCCCCCCCEEEEEEEEeecCHHHHHHhCCCCCCCCCCCCcccceeEEEEEeeCCCCCCCC
Confidence 799999885543 778888888889999999999999999999888775532 34678999999999999999998999
Q ss_pred CCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCC
Q 025895 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (246)
Q Consensus 87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~ 166 (246)
+||+|.... .+ |+|++|+.++.+.++++|++
T Consensus 81 ~Gd~V~~~~-------------------------------~~------------------g~~~~~~~~~~~~~~~~p~~ 111 (323)
T cd05276 81 VGDRVCALL-------------------------------AG------------------GGYAEYVVVPAGQLLPVPEG 111 (323)
T ss_pred CCCEEEEec-------------------------------CC------------------CceeEEEEcCHHHhccCCCC
Confidence 999997542 11 28999999999999999999
Q ss_pred CCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS 241 (246)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~ 241 (246)
+++.+++.+...+.++|.++.+...+.++++|+|+|+ |.+|++++++++.+|+ .++++++++++++.++++|++
T Consensus 112 ~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~vlv~g~~~~ig~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~g~~ 186 (323)
T cd05276 112 LSLVEAAALPEVFFTAWQNLFQLGGLKAGETVLIHGGASGVGTAAIQLAKALGA-RVIATAGSEEKLEACRALGAD 186 (323)
T ss_pred CCHHHHhhchhHHHHHHHHHHHhcCCCCCCEEEEEcCcChHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHcCCC
Confidence 9999999999999999998777788999999999997 8999999999999999 899999999999988888865
No 107
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=99.92 E-value=5.6e-24 Score=183.96 Aligned_cols=187 Identities=28% Similarity=0.373 Sum_probs=162.2
Q ss_pred eeeeEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCC-CCCCCcccccceEEEEEEcCCCCCccC
Q 025895 10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP-EGLFPCILGHEAAGIVESVGEGVTEVQ 86 (246)
Q Consensus 10 ~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~-~~~~p~v~G~e~vG~V~~vG~~~~~~~ 86 (246)
||++++..++.+ +++.++|.|.+.+++|+|++.++++|+.|.....+... ....|.++|||++|+|+++|+++.+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~ 80 (325)
T cd08253 1 MRAIRYHEFGAPDVLRLGDLPVPTPGPGEVLVRVHASGVNPVDTYIRAGAYPGLPPLPYVPGSDGAGVVEAVGEGVDGLK 80 (325)
T ss_pred CceEEEcccCCcccceeeecCCCCCCCCEEEEEEEEEecChhHhhhccCCCCCCCCCCeecccceEEEEEeeCCCCCCCC
Confidence 688888876544 88899999999999999999999999999988777543 235688999999999999999999999
Q ss_pred CCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCC
Q 025895 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (246)
Q Consensus 87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~ 166 (246)
+||+|+..+.. ..... |++++|+.++.+.++++|++
T Consensus 81 ~Gd~v~~~~~~--------------------------~~~~~------------------g~~~~~~~~~~~~~~~ip~~ 116 (325)
T cd08253 81 VGDRVWLTNLG--------------------------WGRRQ------------------GTAAEYVVVPADQLVPLPDG 116 (325)
T ss_pred CCCEEEEeccc--------------------------cCCCC------------------cceeeEEEecHHHcEeCCCC
Confidence 99999866420 00012 38999999999999999999
Q ss_pred CCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS 241 (246)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~ 241 (246)
+++.+++.+++++.++|+++.....+.++++|+|+|+ |.+|++++++++.+|+ +|+++++++++.+.+.++|++
T Consensus 117 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~ 191 (325)
T cd08253 117 VSFEQGAALGIPALTAYRALFHRAGAKAGETVLVHGGSGAVGHAAVQLARWAGA-RVIATASSAEGAELVRQAGAD 191 (325)
T ss_pred CCHHHHhhhhhHHHHHHHHHHHHhCCCCCCEEEEEcCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCC
Confidence 9999999999999999998877788999999999987 9999999999999999 899999999999999888875
No 108
>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.92 E-value=7.6e-24 Score=183.56 Aligned_cols=186 Identities=28% Similarity=0.356 Sum_probs=160.4
Q ss_pred eeeeEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCC-CCCCCcccccceEEEEEEcCCCCCccC
Q 025895 10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP-EGLFPCILGHEAAGIVESVGEGVTEVQ 86 (246)
Q Consensus 10 ~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~-~~~~p~v~G~e~vG~V~~vG~~~~~~~ 86 (246)
|||+++.+.+.+ +++++.+.|.+.+++|+|++.++++|+.|.....+... ....|.++|||++|+|+++|+++..++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~ 80 (326)
T cd08272 1 MKALVLESFGGPEVFELREVPRPQPGPGQVLVRVHASGVNPLDTKIRRGGAAARPPLPAILGCDVAGVVEAVGEGVTRFR 80 (326)
T ss_pred CeEEEEccCCCchheEEeecCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccccceeEEEEEeCCCCCCCC
Confidence 689999988775 78888888889999999999999999999988777643 223578899999999999999999999
Q ss_pred CCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCC
Q 025895 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (246)
Q Consensus 87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~ 166 (246)
+||+|..... |..... |+|++|+.++.+.++++|++
T Consensus 81 ~Gd~V~~~~~--------------------------~~~~~~------------------g~~~~~~~v~~~~~~~~p~~ 116 (326)
T cd08272 81 VGDEVYGCAG--------------------------GLGGLQ------------------GSLAEYAVVDARLLALKPAN 116 (326)
T ss_pred CCCEEEEccC--------------------------CcCCCC------------------CceeEEEEecHHHcccCCCC
Confidence 9999985431 000012 38999999999999999999
Q ss_pred CCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS 241 (246)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~ 241 (246)
+++..++.+++.+.++|+++.+...+.++++++|+|+ |.+|++++++++.+|+ +|++++++ ++.+.++++|++
T Consensus 117 ~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~-~v~~~~~~-~~~~~~~~~g~~ 190 (326)
T cd08272 117 LSMREAAALPLVGITAWEGLVDRAAVQAGQTVLIHGGAGGVGHVAVQLAKAAGA-RVYATASS-EKAAFARSLGAD 190 (326)
T ss_pred CCHHHHHHhHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEech-HHHHHHHHcCCC
Confidence 9999999998899999998778889999999999986 9999999999999999 88888888 888888888875
No 109
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=99.92 E-value=4.4e-24 Score=187.58 Aligned_cols=174 Identities=30% Similarity=0.410 Sum_probs=142.9
Q ss_pred eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCC----CCCcccccceEEEE---EEcC-CCCCccCCCCEEEe
Q 025895 22 LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG----LFPCILGHEAAGIV---ESVG-EGVTEVQPGDHVIP 93 (246)
Q Consensus 22 ~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~----~~p~v~G~e~vG~V---~~vG-~~~~~~~~Gd~V~~ 93 (246)
...++.|+|.|++++++|++.++++|+.|+.+..+.+... .+|.+++.++.|.+ ...| ..+..+..||.+..
T Consensus 20 ~~~~~~~iP~~~~~~~~i~~~a~a~NpiD~~~~~g~~~~~~~~~~~p~ii~~~g~~~~~~~~~~g~~~~~~~~~g~~~~~ 99 (347)
T KOG1198|consen 20 LFSEEVPIPEPEDGEVLIKVVAVALNPIDLKIRNGYYSPIPLGREFPGIIGRDGSGVVGAVESVGDDVVGGWVHGDAVVA 99 (347)
T ss_pred EEeecccCCCCCCCceEEEEEEeccChHHHHHHccCcCCCCCccCCCCccccccCCceeEEeccccccccceEeeeEEee
Confidence 4567899999999999999999999999999998887653 36755555555553 3334 22233455554432
Q ss_pred eCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCCchhhh
Q 025895 94 CYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVC 173 (246)
Q Consensus 94 ~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa 173 (246)
. ...|+|+||.++|...++++|+++++.+++
T Consensus 100 ~-------------------------------------------------~~~g~~aey~v~p~~~~~~~P~~l~~~~aa 130 (347)
T KOG1198|consen 100 F-------------------------------------------------LSSGGLAEYVVVPEKLLVKIPESLSFEEAA 130 (347)
T ss_pred c-------------------------------------------------cCCCceeeEEEcchhhccCCCCccChhhhh
Confidence 2 223499999999999999999999999999
Q ss_pred hccccchhhhhhhhhhC------CCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC--ccc
Q 025895 174 LLGCGVPTGLGAVWNTA------KVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS--SKY 244 (246)
Q Consensus 174 ~l~~~~~ta~~~l~~~~------~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~--~~~ 244 (246)
.++.++.|||.+++... +.+++++|||+|+ |++|++++|+|++.|+ ..+++.++++++++++++||| ++|
T Consensus 131 ~~p~~~~tA~~al~~~~~~~~~~~~~~g~~vLv~ggsggVG~~aiQlAk~~~~-~~v~t~~s~e~~~l~k~lGAd~vvdy 209 (347)
T KOG1198|consen 131 ALPLAALTALSALFQLAPGKRSKKLSKGKSVLVLGGSGGVGTAAIQLAKHAGA-IKVVTACSKEKLELVKKLGADEVVDY 209 (347)
T ss_pred cCchHHHHHHHHHHhccccccccccCCCCeEEEEeCCcHHHHHHHHHHHhcCC-cEEEEEcccchHHHHHHcCCcEeecC
Confidence 99999999999999999 8999999999977 8999999999999996 677777999999999999999 555
Q ss_pred c
Q 025895 245 H 245 (246)
Q Consensus 245 ~ 245 (246)
+
T Consensus 210 ~ 210 (347)
T KOG1198|consen 210 K 210 (347)
T ss_pred C
Confidence 4
No 110
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=99.92 E-value=1.5e-23 Score=181.51 Aligned_cols=172 Identities=26% Similarity=0.359 Sum_probs=145.2
Q ss_pred ecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhh-cCCCCC--CCCCcccccceEEEEEEcCCCCCccCCCCEEE
Q 025895 16 WEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTW-SGKDPE--GLFPCILGHEAAGIVESVGEGVTEVQPGDHVI 92 (246)
Q Consensus 16 ~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~-~~~~~~--~~~p~v~G~e~vG~V~~vG~~~~~~~~Gd~V~ 92 (246)
++.++ +++++++.|++.++||+||+.++++|+.|...+ .+.... +.+|.++|+|++|+|+++|++++++++||+|+
T Consensus 2 ~~~~~-~~~~~~~~~~l~~~ev~v~v~~~~i~~~d~~~~~~g~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~ 80 (312)
T cd08269 2 TGPGR-FEVEEHPRPTPGPGQVLVRVEGCGVCGSDLPAFNQGRPWFVYPAEPGGPGHEGWGRVVALGPGVRGLAVGDRVA 80 (312)
T ss_pred CCCCe-eEEEECCCCCCCCCeEEEEEEEeeecccchHHHccCCCCcccCCCCcccceeeEEEEEEECCCCcCCCCCCEEE
Confidence 34555 999999999999999999999999999998887 665322 23478999999999999999999999999998
Q ss_pred eeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCCchhh
Q 025895 93 PCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKV 172 (246)
Q Consensus 93 ~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~a 172 (246)
..+ .|+|++|+.++.+.++++|+++ ..+
T Consensus 81 ~~~--------------------------------------------------~g~~~~~~~v~~~~~~~lP~~~--~~~ 108 (312)
T cd08269 81 GLS--------------------------------------------------GGAFAEYDLADADHAVPLPSLL--DGQ 108 (312)
T ss_pred Eec--------------------------------------------------CCcceeeEEEchhheEECCCch--hhh
Confidence 542 1289999999999999999998 223
Q ss_pred hhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895 173 CLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS 241 (246)
Q Consensus 173 a~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~ 241 (246)
+.+..++.++++++. ..+++++++|+|+|+|.+|++++++|+.+|+..++++.+++++.++++++|++
T Consensus 109 ~~~~~~~~~a~~~~~-~~~~~~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~ 176 (312)
T cd08269 109 AFPGEPLGCALNVFR-RGWIRAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALARELGAT 176 (312)
T ss_pred HHhhhhHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCc
Confidence 322367788888764 78889999999998899999999999999994399999999999999999886
No 111
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=99.92 E-value=1.3e-23 Score=182.76 Aligned_cols=170 Identities=22% Similarity=0.318 Sum_probs=152.1
Q ss_pred eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCC-CCCCcccccceEEEEEEcCCCCCccCCCCEEEeeCCCCCC
Q 025895 22 LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECR 100 (246)
Q Consensus 22 ~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~-~~~p~v~G~e~vG~V~~vG~~~~~~~~Gd~V~~~~~~~~~ 100 (246)
+++++.|.|.+.+++|+||++++++|+.|...+.+.... ..+|.++|||++|+|+++|+++..+++||+|+..+.
T Consensus 14 ~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~---- 89 (323)
T cd05282 14 LELVSLPIPPPGPGEVLVRMLAAPINPSDLITISGAYGSRPPLPAVPGNEGVGVVVEVGSGVSGLLVGQRVLPLGG---- 89 (323)
T ss_pred EEeEeCCCCCCCCCeEEEEEEeccCCHHHHHHhcCcCCCCCCCCCcCCcceEEEEEEeCCCCCCCCCCCEEEEeCC----
Confidence 677888889999999999999999999999988776532 356789999999999999999999999999986531
Q ss_pred CChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCCchhhhhccccch
Q 025895 101 ECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP 180 (246)
Q Consensus 101 ~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~l~~~~~ 180 (246)
+| +|++|+.++...++++|+++++.+++.+++...
T Consensus 90 ---------------------------~g------------------~~~~~~~~~~~~~~~lp~~~~~~~~a~~~~~~~ 124 (323)
T cd05282 90 ---------------------------EG------------------TWQEYVVAPADDLIPVPDSISDEQAAMLYINPL 124 (323)
T ss_pred ---------------------------CC------------------cceeEEecCHHHeEECCCCCCHHHHHHHhccHH
Confidence 22 899999999999999999999999999989999
Q ss_pred hhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895 181 TGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS 241 (246)
Q Consensus 181 ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~ 241 (246)
++|.++.....+.++++|+|+|+ |.+|++++++|+.+|+ .++++.+++++.+.++++|++
T Consensus 125 ta~~~~~~~~~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~ 185 (323)
T cd05282 125 TAWLMLTEYLKLPPGDWVIQNAANSAVGRMLIQLAKLLGF-KTINVVRRDEQVEELKALGAD 185 (323)
T ss_pred HHHHHHHHhccCCCCCEEEEcccccHHHHHHHHHHHHCCC-eEEEEecChHHHHHHHhcCCC
Confidence 99998877778899999999988 8999999999999999 889999999999999999986
No 112
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=99.91 E-value=4.5e-23 Score=177.73 Aligned_cols=181 Identities=32% Similarity=0.389 Sum_probs=157.2
Q ss_pred eeeEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCCC
Q 025895 11 KAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG 88 (246)
Q Consensus 11 ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~G 88 (246)
||+.+...+.+ +.+.+.+.+.+.+++|+||+.++++|+.|.....+..+. .+|.++|||++|+|+.+|+++.++++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~~~~~~-~~~~~~g~e~~G~v~~~g~~~~~~~~G 79 (320)
T cd05286 1 KAVRIHKTGGPEVLEYEDVPVPEPGPGEVLVRNTAIGVNFIDTYFRSGLYPL-PLPFVLGVEGAGVVEAVGPGVTGFKVG 79 (320)
T ss_pred CeEEEecCCCccceEEeecCCCCCCCCEEEEEEEEeecCHHHHHHhcCCCCC-CCCccCCcceeEEEEEECCCCCCCCCC
Confidence 46666655543 667788877789999999999999999999988776543 457789999999999999999999999
Q ss_pred CEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCC
Q 025895 89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP 168 (246)
Q Consensus 89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~ 168 (246)
|+|+... .. |+|++|+.++.+.++++|++++
T Consensus 80 ~~V~~~~-------------------------------~~------------------g~~~~~~~~~~~~~~~~p~~~~ 110 (320)
T cd05286 80 DRVAYAG-------------------------------PP------------------GAYAEYRVVPASRLVKLPDGIS 110 (320)
T ss_pred CEEEEec-------------------------------CC------------------CceeEEEEecHHHceeCCCCCC
Confidence 9998542 02 2899999999999999999999
Q ss_pred chhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895 169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS 242 (246)
Q Consensus 169 ~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~ 242 (246)
+.+++.+.+...++|.++.....+.++++|+|+|+ |.+|++++++++.+|+ .|+++++++++.+.++++|++.
T Consensus 111 ~~~~~~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~ 184 (320)
T cd05286 111 DETAAALLLQGLTAHYLLRETYPVKPGDTVLVHAAAGGVGLLLTQWAKALGA-TVIGTVSSEEKAELARAAGADH 184 (320)
T ss_pred HHHHhhccchHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHCCCCE
Confidence 99999988899999998877788999999999996 9999999999999999 8999999999999999898753
No 113
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=99.91 E-value=5.9e-23 Score=176.50 Aligned_cols=184 Identities=28% Similarity=0.333 Sum_probs=156.7
Q ss_pred eeeeEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCC---CCCCCcccccceEEEEEEcCCCCCc
Q 025895 10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP---EGLFPCILGHEAAGIVESVGEGVTE 84 (246)
Q Consensus 10 ~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~---~~~~p~v~G~e~vG~V~~vG~~~~~ 84 (246)
||++++..++.. +++++.+.|.+++++|+||+.++++|+.|+..+.+... ....|.++|||++|+|+.+|+++.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~ 80 (309)
T cd05289 1 MKAVRIHEYGGPEVLELADVPTPEPGPGEVLVKVHAAGVNPVDLKIREGLLKAAFPLTLPLIPGHDVAGVVVAVGPGVTG 80 (309)
T ss_pred CceEEEcccCCccceeecccCCCCCCCCeEEEEEEEeeCCHHHHHHhcCCccccCCCCCCCccccceeEEEEeeCCCCCC
Confidence 688898877654 56778888888999999999999999999998877542 2345789999999999999999999
Q ss_pred cCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcC
Q 025895 85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID 164 (246)
Q Consensus 85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip 164 (246)
+++||+|...+.. + .+ |+|++|+.++...++++|
T Consensus 81 ~~~G~~V~~~~~~-------------------------~---~~------------------g~~~~~~~~~~~~~~~~p 114 (309)
T cd05289 81 FKVGDEVFGMTPF-------------------------T---RG------------------GAYAEYVVVPADELALKP 114 (309)
T ss_pred CCCCCEEEEccCC-------------------------C---CC------------------CcceeEEEecHHHhccCC
Confidence 9999999865420 0 12 389999999999999999
Q ss_pred CCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895 165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS 241 (246)
Q Consensus 165 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~ 241 (246)
+++++..++.+.+...++|.++.....+.++++|+|+|+ |.+|++++++++..|+ +++++..++ +.+.++++|++
T Consensus 115 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vlv~g~~g~~g~~~~~~a~~~g~-~v~~~~~~~-~~~~~~~~g~~ 190 (309)
T cd05289 115 ANLSFEEAAALPLAGLTAWQALFELGGLKAGQTVLIHGAAGGVGSFAVQLAKARGA-RVIATASAA-NADFLRSLGAD 190 (309)
T ss_pred CCCCHHHHHhhhHHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEecch-hHHHHHHcCCC
Confidence 999999999988889999998777667899999999997 9999999999999999 788887777 88888888864
No 114
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.91 E-value=1.3e-22 Score=175.78 Aligned_cols=187 Identities=33% Similarity=0.390 Sum_probs=159.8
Q ss_pred eeeeEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCC-CCCCcccccceEEEEEEcCCCCCccC
Q 025895 10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQ 86 (246)
Q Consensus 10 ~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~-~~~p~v~G~e~vG~V~~vG~~~~~~~ 86 (246)
||++++...+.+ +.+.+.+.|.+.+++++|++.++++|+.|.....+.... ..+|.++|||++|+|+.+|+++.+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~ 80 (328)
T cd08268 1 MRAVRFHQFGGPEVLRIEELPVPAPGAGEVLIRVEAIGLNRADAMFRRGAYIEPPPLPARLGYEAAGVVEAVGAGVTGFA 80 (328)
T ss_pred CeEEEEeccCCcceeEEeecCCCCCCCCeEEEEEEEEecChHHhheeccccCCCCCCCCCCCcceEEEEEeeCCCCCcCC
Confidence 688888875543 777888888899999999999999999998887665432 24577899999999999999999999
Q ss_pred CCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCC
Q 025895 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (246)
Q Consensus 87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~ 166 (246)
+||+|...+...+. . .|++++|+.++.+.++++|++
T Consensus 81 ~Gd~V~~~~~~~~~--------------------------~------------------~g~~~~~~~~~~~~~~~~p~~ 116 (328)
T cd08268 81 VGDRVSVIPAADLG--------------------------Q------------------YGTYAEYALVPAAAVVKLPDG 116 (328)
T ss_pred CCCEEEeccccccC--------------------------C------------------CccceEEEEechHhcEeCCCC
Confidence 99999865421000 1 238999999999999999999
Q ss_pred CCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS 241 (246)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~ 241 (246)
+++.+++.+++.+.++|.++.....+.++++++|+|+ |.+|++++++++..|+ +++++++++++.+.++++|.+
T Consensus 117 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~g~~ 191 (328)
T cd08268 117 LSFVEAAALWMQYLTAYGALVELAGLRPGDSVLITAASSSVGLAAIQIANAAGA-TVIATTRTSEKRDALLALGAA 191 (328)
T ss_pred CCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHcCCC
Confidence 9999999999999999998877788899999999998 9999999999999999 899999999999888888764
No 115
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=99.90 E-value=2.7e-22 Score=173.56 Aligned_cols=182 Identities=28% Similarity=0.328 Sum_probs=158.0
Q ss_pred eeeeEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCC-CCCCcccccceEEEEEEcCCCCCccC
Q 025895 10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQ 86 (246)
Q Consensus 10 ~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~-~~~p~v~G~e~vG~V~~vG~~~~~~~ 86 (246)
||++.+...+.+ +++.+.+.|.+.+++++||+.++++|+.|...+.+.+.. ..+|.++|||++|+|+.+|+.+.+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vg~~~~~~~ 80 (325)
T TIGR02824 1 MKAIEITEPGGPEVLVLVEVPLPVPKAGEVLIRVAAAGVNRPDLLQRAGKYPPPPGASDILGLEVAGEVVAVGEGVSRWK 80 (325)
T ss_pred CceEEEccCCCcccceEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCCCccceeEEEEEEeCCCCCCCC
Confidence 678888876655 677777777789999999999999999999888765532 23578999999999999999999999
Q ss_pred CCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCC
Q 025895 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (246)
Q Consensus 87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~ 166 (246)
+||+|+... .+ |+|++|+.++...++++|++
T Consensus 81 ~Gd~V~~~~-------------------------------~~------------------~~~~~~~~~~~~~~~~ip~~ 111 (325)
T TIGR02824 81 VGDRVCALV-------------------------------AG------------------GGYAEYVAVPAGQVLPVPEG 111 (325)
T ss_pred CCCEEEEcc-------------------------------CC------------------CcceeEEEecHHHcEeCCCC
Confidence 999997531 11 28999999999999999999
Q ss_pred CCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS 241 (246)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~ 241 (246)
+++..++.+.++..++|.++.....+.++++++|+|+ |.+|++++++++.+|+ +|+++.+++++.+.++++|.+
T Consensus 112 ~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~vlv~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~ 186 (325)
T TIGR02824 112 LSLVEAAALPETFFTVWSNLFQRGGLKAGETVLIHGGASGIGTTAIQLAKAFGA-RVFTTAGSDEKCAACEALGAD 186 (325)
T ss_pred CCHHHHHhhhHHHHHHHHHHHHhcCCCCCCEEEEEcCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCc
Confidence 9999999999999999998778888999999999997 9999999999999999 899999999998888888764
No 116
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=99.90 E-value=3.5e-22 Score=174.37 Aligned_cols=177 Identities=23% Similarity=0.209 Sum_probs=146.9
Q ss_pred eeeeEeecCCC------CeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCC---CCCCCcccccceEEEEEEcCC
Q 025895 10 CKAAVAWEPNK------PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP---EGLFPCILGHEAAGIVESVGE 80 (246)
Q Consensus 10 ~ka~~~~~~~~------~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~---~~~~p~v~G~e~vG~V~~vG~ 80 (246)
.|||++.+.++ .++++++|.|.+.+++|+||+.++++|+.|...+.+... +...+.++|+|++|+|+++|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~Vkv~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~ 81 (329)
T cd05288 2 NRQVVLAKRPEGPPPPDDFELVEVPLPELKDGEVLVRTLYLSVDPYMRGWMSDAKSYSPPVQLGEPMRGGGVGEVVESRS 81 (329)
T ss_pred CcEEEEeccCCCCCCccceeEEeccCCCCCCCeEEEEEEEEecCHHHhhhhccCcccCCCccCCCcccCceEEEEEecCC
Confidence 46777765442 289999999999999999999999999988665544321 112345789999999999996
Q ss_pred CCCccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeec-Cc
Q 025895 81 GVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHD-VS 159 (246)
Q Consensus 81 ~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~ 159 (246)
. ++++||+|+.. + +|++|+.++. +.
T Consensus 82 ~--~~~~Gd~V~~~----------------------------------~------------------~~~~~~~v~~~~~ 107 (329)
T cd05288 82 P--DFKVGDLVSGF----------------------------------L------------------GWQEYAVVDGASG 107 (329)
T ss_pred C--CCCCCCEEecc----------------------------------c------------------ceEEEEEecchhh
Confidence 4 79999999732 1 6999999999 99
Q ss_pred eEEcCCCCC--chhhhh-ccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895 160 VAKIDPQAP--LDKVCL-LGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG 235 (246)
Q Consensus 160 ~~~ip~~~~--~~~aa~-l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~ 235 (246)
++++|++++ +..++. +++++.++|+++.....+.++++|||+|+ |.+|++++++++.+|+ +|+++++++++.+.+
T Consensus 108 ~~~lP~~~~~~~~~~~~~l~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~-~vi~~~~~~~~~~~~ 186 (329)
T cd05288 108 LRKLDPSLGLPLSAYLGVLGMTGLTAYFGLTEIGKPKPGETVVVSAAAGAVGSVVGQIAKLLGA-RVVGIAGSDEKCRWL 186 (329)
T ss_pred cEECCcccCCCHHHHHHhcccHHHHHHHHHHhccCCCCCCEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence 999999985 445555 88899999998877778899999999986 9999999999999999 899999999999999
Q ss_pred hh-cCCC
Q 025895 236 MS-CVSS 241 (246)
Q Consensus 236 ~~-lg~~ 241 (246)
++ +|++
T Consensus 187 ~~~~g~~ 193 (329)
T cd05288 187 VEELGFD 193 (329)
T ss_pred HhhcCCc
Confidence 88 8876
No 117
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.90 E-value=2.8e-22 Score=173.56 Aligned_cols=171 Identities=28% Similarity=0.366 Sum_probs=148.6
Q ss_pred EEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCC---CCCCCcccccceEEEEEEcCCCCCccCCCCEEEeeCCCCC
Q 025895 23 VIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP---EGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAEC 99 (246)
Q Consensus 23 ~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~---~~~~p~v~G~e~vG~V~~vG~~~~~~~~Gd~V~~~~~~~~ 99 (246)
++++.|.|.+.+++|+||+.++++|+.|...+.+... ....|.++|||++|+|+++|+++.++++||+|+..+...
T Consensus 15 ~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~- 93 (319)
T cd08267 15 LEVEVPIPTPKPGEVLVKVHAASVNPVDWKLRRGPPKLLLGRPFPPIPGMDFAGEVVAVGSGVTRFKVGDEVFGRLPPK- 93 (319)
T ss_pred ccccCCCCCCCCCEEEEEEEEeeCCHHHHHHHcCCCcccccCCCCCcccceeeEEEEEeCCCCCCCCCCCEEEEeccCC-
Confidence 7888999999999999999999999999998877652 123467899999999999999999999999998653210
Q ss_pred CCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCCchhhhhccccc
Q 025895 100 RECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGV 179 (246)
Q Consensus 100 ~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~l~~~~ 179 (246)
.. |+|++|+.++.+.++++|+++++++++.+.+.+
T Consensus 94 ---------------------------~~------------------g~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~ 128 (319)
T cd08267 94 ---------------------------GG------------------GALAEYVVAPESGLAKKPEGVSFEEAAALPVAG 128 (319)
T ss_pred ---------------------------CC------------------ceeeEEEEechhheEECCCCCCHHHHHhhhhHH
Confidence 12 289999999999999999999999999999999
Q ss_pred hhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895 180 PTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS 241 (246)
Q Consensus 180 ~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~ 241 (246)
.++|+++.....+.++++|+|+|+ |.+|++++++|+.+|+ +|++++.+ ++.+.++++|++
T Consensus 129 ~~a~~~~~~~~~~~~g~~vli~g~~g~~g~~~~~la~~~g~-~v~~~~~~-~~~~~~~~~g~~ 189 (319)
T cd08267 129 LTALQALRDAGKVKPGQRVLINGASGGVGTFAVQIAKALGA-HVTGVCST-RNAELVRSLGAD 189 (319)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeCH-HHHHHHHHcCCC
Confidence 999998877777999999999998 9999999999999999 88888765 888888888875
No 118
>PF08240 ADH_N: Alcohol dehydrogenase GroES-like domain; InterPro: IPR013154 This is the catalytic domain of alcohol dehydrogenases (1.1.1.1 from EC). Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure; a name derived from the superfamily of proteins with a GroES fold. Proteins with a GroES fold structure have a highly conserved hydrophobic core and a glycyl-aspartate dipeptide which is thought to maintain the fold [, ].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1YKF_D 2NVB_A 3FSR_D 1BXZ_B 3FTN_A 3MEQ_D 3UOG_B 3HZZ_B 4DVJ_A 1P0F_A ....
Probab=99.89 E-value=3.1e-23 Score=153.63 Aligned_cols=108 Identities=37% Similarity=0.689 Sum_probs=93.2
Q ss_pred CCeEEEEEeeeecchhhhhhhcCC-CCCCCCCcccccceEEEEEEcCCCCCccCCCCEEEeeCCCCCCCChhhhCCCCCC
Q 025895 34 AGEVRIKILFTALCHTDAYTWSGK-DPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNL 112 (246)
Q Consensus 34 ~~eVlVkv~~~~i~~~D~~~~~~~-~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~ 112 (246)
|+||+||+++++||++|++++.+. .....+|.++|||++|+|+++|+++++|++||+|++.+...|+.|.+|..+..+.
T Consensus 1 P~eVlVkv~a~gic~~D~~~~~g~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~ 80 (109)
T PF08240_consen 1 PGEVLVKVRAAGICGSDLHIREGGPPPPPKFPLILGHEGVGVVVAVGPGVTDFKVGDRVVVSPNIGCGECEYCLSGRPNL 80 (109)
T ss_dssp TTEEEEEEEEEEE-HHHHHHHTTSSSSTSSSSEES-SEEEEEEEEESTTTTSSGTT-EEEEESEEETSSSHHHHTTTGGG
T ss_pred CCEEEEEEEEeeeCHHHHHHHhhccccCCCCCcccccceeeeeeeeccccccccccceeeeecccCccCchhhcCCcccc
Confidence 689999999999999999999983 4556889999999999999999999999999999999988899999999999999
Q ss_pred CCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEc
Q 025895 113 CGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI 163 (246)
Q Consensus 113 c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i 163 (246)
|.+... .|.. .+| +|+||+.+|.++++++
T Consensus 81 c~~~~~---~g~~-~~G------------------~~aey~~v~~~~~~~v 109 (109)
T PF08240_consen 81 CPNPEV---LGLG-LDG------------------GFAEYVVVPARNLVPV 109 (109)
T ss_dssp TTTBEE---TTTS-STC------------------SSBSEEEEEGGGEEEE
T ss_pred CCCCCE---eEcC-CCC------------------cccCeEEEehHHEEEC
Confidence 987654 3332 444 9999999999999875
No 119
>cd08251 polyketide_synthase polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a
Probab=99.89 E-value=6.2e-22 Score=169.88 Aligned_cols=164 Identities=26% Similarity=0.331 Sum_probs=145.3
Q ss_pred cCCCCCCeEEEEEeeeecchhhhhhhcCCCCC-CCCCcccccceEEEEEEcCCCCCccCCCCEEEeeCCCCCCCChhhhC
Q 025895 29 VAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKS 107 (246)
Q Consensus 29 ~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~-~~~p~v~G~e~vG~V~~vG~~~~~~~~Gd~V~~~~~~~~~~c~~c~~ 107 (246)
.|.+.+++|+||+.++++|+.|+....+.++. ..+|.++|+|++|+|+++|+++.++++||+|+.....
T Consensus 2 ~p~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~---------- 71 (303)
T cd08251 2 VAPPGPGEVRIQVRAFSLNFGDLLCVRGLYPTMPPYPFTPGFEASGVVRAVGPHVTRLAVGDEVIAGTGE---------- 71 (303)
T ss_pred CCCCCCCEEEEEEEEeecChHHHHHHCCCCCCCCCCCCCcCceeeEEEEEECCCCCCCCCCCEEEEecCC----------
Confidence 46788999999999999999999988776542 3568899999999999999999999999999865320
Q ss_pred CCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCCchhhhhccccchhhhhhhh
Q 025895 108 GKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVW 187 (246)
Q Consensus 108 ~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~ 187 (246)
.+| +|++|+.++.+.++++|+++++++++.+++.+.++|.++
T Consensus 72 -------------------~~g------------------~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l- 113 (303)
T cd08251 72 -------------------SMG------------------GHATLVTVPEDQVVRKPASLSFEEACALPVVFLTVIDAF- 113 (303)
T ss_pred -------------------CCc------------------ceeeEEEccHHHeEECCCCCCHHHHHHhHHHHHHHHHHH-
Confidence 123 899999999999999999999999999999999999976
Q ss_pred hhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895 188 NTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS 241 (246)
Q Consensus 188 ~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~ 241 (246)
....++++++|+|+|+ |.+|++++++++.+|+ +++++++++++.+.++++|++
T Consensus 114 ~~~~~~~g~~vli~~~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~ 167 (303)
T cd08251 114 ARAGLAKGEHILIQTATGGTGLMAVQLARLKGA-EIYATASSDDKLEYLKQLGVP 167 (303)
T ss_pred HhcCCCCCCEEEEecCCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHcCCC
Confidence 5788999999999976 9999999999999999 899999999999999989876
No 120
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=99.89 E-value=1.4e-21 Score=168.85 Aligned_cols=181 Identities=34% Similarity=0.457 Sum_probs=155.3
Q ss_pred eeeeEeecCCCC--eEEEEeecCCCC-CCeEEEEEeeeecchhhhhhhcCCCCC-CCCCcccccceEEEEEEcCCCCCcc
Q 025895 10 CKAAVAWEPNKP--LVIEDVQVAPPQ-AGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEV 85 (246)
Q Consensus 10 ~ka~~~~~~~~~--~~~~e~~~p~~~-~~eVlVkv~~~~i~~~D~~~~~~~~~~-~~~p~v~G~e~vG~V~~vG~~~~~~ 85 (246)
|||+++...+.+ +++.+.+ |.+. +++++||+.++++|+.|...+.+.... ...|.++|||++|+|+.+|+++..+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~ 79 (323)
T cd08241 1 MKAVVCKELGGPEDLVLEEVP-PEPGAPGEVRIRVEAAGVNFPDLLMIQGKYQVKPPLPFVPGSEVAGVVEAVGEGVTGF 79 (323)
T ss_pred CeEEEEecCCCcceeEEecCC-CCCCCCCeEEEEEEEEecCHHHHHHHcCCCCCCCCCCCcccceeEEEEEEeCCCCCCC
Confidence 688888754433 7777887 7766 499999999999999999988776532 2346789999999999999999899
Q ss_pred CCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCC
Q 025895 86 QPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP 165 (246)
Q Consensus 86 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~ 165 (246)
++||+|+..+. . |+|++|+.++.+.++++|+
T Consensus 80 ~~G~~V~~~~~-------------------------------~------------------~~~~~~~~~~~~~~~~ip~ 110 (323)
T cd08241 80 KVGDRVVALTG-------------------------------Q------------------GGFAEEVVVPAAAVFPLPD 110 (323)
T ss_pred CCCCEEEEecC-------------------------------C------------------ceeEEEEEcCHHHceeCCC
Confidence 99999986530 1 2899999999999999999
Q ss_pred CCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895 166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS 241 (246)
Q Consensus 166 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~ 241 (246)
++++.+++.+.+...++|.++.....+.++++|+|+|+ |.+|++++++++..|+ .|+++++++++.+.++++|++
T Consensus 111 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~ 186 (323)
T cd08241 111 GLSFEEAAALPVTYGTAYHALVRRARLQPGETVLVLGAAGGVGLAAVQLAKALGA-RVIAAASSEEKLALARALGAD 186 (323)
T ss_pred CCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHcCCc
Confidence 99998888888899999988776788999999999998 9999999999999999 799999999999998888864
No 121
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=99.89 E-value=5.3e-22 Score=166.49 Aligned_cols=170 Identities=25% Similarity=0.310 Sum_probs=141.3
Q ss_pred eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcC--CCCCccCCCCEEEeeCCCCC
Q 025895 22 LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVG--EGVTEVQPGDHVIPCYQAEC 99 (246)
Q Consensus 22 ~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG--~~~~~~~~Gd~V~~~~~~~~ 99 (246)
|+++|.++|+|+++|||||++|.++++.....++.. +.-..|.-+|...+|.++... |....|++||.|....
T Consensus 27 F~lee~~vp~p~~GqvLl~~~ylS~DPymRgrm~d~-~SY~~P~~lG~~~~gg~V~~Vv~S~~~~f~~GD~V~~~~---- 101 (340)
T COG2130 27 FRLEEVDVPEPGEGQVLLRTLYLSLDPYMRGRMSDA-PSYAPPVELGEVMVGGTVAKVVASNHPGFQPGDIVVGVS---- 101 (340)
T ss_pred ceeEeccCCCCCcCceEEEEEEeccCHHHeecccCC-cccCCCcCCCceeECCeeEEEEecCCCCCCCCCEEEecc----
Confidence 999999999999999999999999999655444333 222457777777666555543 4567799999997431
Q ss_pred CCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCCc--hhhhhccc
Q 025895 100 RECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL--DKVCLLGC 177 (246)
Q Consensus 100 ~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~--~~aa~l~~ 177 (246)
+|++|..++.+.+.+++++.-+ .....+.+
T Consensus 102 ------------------------------------------------GWq~y~i~~~~~l~Kvd~~~~pl~~~LgvLGm 133 (340)
T COG2130 102 ------------------------------------------------GWQEYAISDGEGLRKLDPSPAPLSAYLGVLGM 133 (340)
T ss_pred ------------------------------------------------cceEEEeechhhceecCCCCCCcchHHhhcCC
Confidence 7999999999999999866322 23344788
Q ss_pred cchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh-cCCC--cccc
Q 025895 178 GVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS-CVSS--SKYH 245 (246)
Q Consensus 178 ~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~-lg~~--~~~~ 245 (246)
+..|||.+|++..+.++|++|+|.+| |++|..+.|+||..|+ +||.+..+++|.+.+++ +|.| ++||
T Consensus 134 pG~TAY~gLl~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~-rVVGiaGg~eK~~~l~~~lGfD~~idyk 204 (340)
T COG2130 134 PGLTAYFGLLDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGC-RVVGIAGGAEKCDFLTEELGFDAGIDYK 204 (340)
T ss_pred chHHHHHHHHHhcCCCCCCEEEEEecccccchHHHHHHHhhCC-eEEEecCCHHHHHHHHHhcCCceeeecC
Confidence 99999999999999999999999987 9999999999999999 99999999999999998 9999 7775
No 122
>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.88 E-value=7.7e-21 Score=165.74 Aligned_cols=180 Identities=24% Similarity=0.323 Sum_probs=149.7
Q ss_pred eeeEeecCCC--CeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCC-CCCCcccccceEEEEEEcCCCCCccCC
Q 025895 11 KAAVAWEPNK--PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQP 87 (246)
Q Consensus 11 ka~~~~~~~~--~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~-~~~p~v~G~e~vG~V~~vG~~~~~~~~ 87 (246)
|++++...+. .+++++.+.|.+.+++|+||+.++++|+.|...+.+.... +..|.++|||++|+|+.+|+++.++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~~ 80 (337)
T cd08275 1 RAVVLTGFGGLDKLKVEKEALPEPSSGEVRVRVEACGLNFADLMARQGLYDSAPKPPFVPGFECAGTVEAVGEGVKDFKV 80 (337)
T ss_pred CeEEEcCCCCccceEEEecCCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCCCCCCCCCCcceeEEEEEEECCCCcCCCC
Confidence 4566665543 2788888888899999999999999999999988776532 345778999999999999999999999
Q ss_pred CCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCC
Q 025895 88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA 167 (246)
Q Consensus 88 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~ 167 (246)
||+|+.... + |+|++|..++.+.++++|+++
T Consensus 81 G~~V~~~~~-------------------------------~------------------~~~~~~~~~~~~~~~~ip~~~ 111 (337)
T cd08275 81 GDRVMGLTR-------------------------------F------------------GGYAEVVNVPADQVFPLPDGM 111 (337)
T ss_pred CCEEEEecC-------------------------------C------------------CeeeeEEEecHHHeEECCCCC
Confidence 999986421 1 289999999999999999999
Q ss_pred CchhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHc-CCCeEEEEcCChhHHHHHhhcCCC
Q 025895 168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAA-GASRVIGIDIDPKKFDRGMSCVSS 241 (246)
Q Consensus 168 ~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~-G~~~vi~~~~~~~~~~~~~~lg~~ 241 (246)
++.+++.+.+.+.++|+++.....++++++|+|+|+ |.+|++++++++.+ +. .++.. ..+++.+.++++|++
T Consensus 112 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~g~~g~~~~~~a~~~~~~-~~~~~-~~~~~~~~~~~~g~~ 185 (337)
T cd08275 112 SFEEAAAFPVNYLTAYYALFELGNLRPGQSVLVHSAAGGVGLAAGQLCKTVPNV-TVVGT-ASASKHEALKENGVT 185 (337)
T ss_pred CHHHHhhhhHHHHHHHHHHHHhhCCCCCCEEEEEcCcchHHHHHHHHHHHccCc-EEEEe-CCHHHHHHHHHcCCc
Confidence 999999998999999998877888999999999998 99999999999999 43 33222 345677888888875
No 123
>cd05195 enoyl_red enoyl reductase of polyketide synthase. Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase
Probab=99.86 E-value=8.1e-21 Score=161.30 Aligned_cols=152 Identities=26% Similarity=0.242 Sum_probs=137.0
Q ss_pred CeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCCCCEEEeeCCCCCCCChhhhCCCCCCCC
Q 025895 35 GEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCG 114 (246)
Q Consensus 35 ~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~ 114 (246)
+||+||+.++++|+.|+....+.. ..+|.++|||++|+|+++|+++..+++||+|....
T Consensus 1 ~~v~i~v~~~~~~~~d~~~~~g~~--~~~~~~~g~e~~G~v~~~g~~~~~~~~Gd~V~~~~------------------- 59 (293)
T cd05195 1 DEVEVEVKAAGLNFRDVLVALGLL--PGDETPLGLECSGIVTRVGSGVTGLKVGDRVMGLA------------------- 59 (293)
T ss_pred CceEEEEEEEecCHHHHHHHhCCC--CCCCCccceeeeEEEEeecCCccCCCCCCEEEEEe-------------------
Confidence 589999999999999999887764 24578999999999999999999999999998542
Q ss_pred CccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCCchhhhhccccchhhhhhhhhhCCCCC
Q 025895 115 KVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEP 194 (246)
Q Consensus 115 ~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~ 194 (246)
. |+|++|+.++.+.++++|+++++.+++.++++..++|.++.+...+++
T Consensus 60 -------------~------------------g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 108 (293)
T cd05195 60 -------------P------------------GAFATHVRVDARLVVKIPDSLSFEEAATLPVAYLTAYYALVDLARLQK 108 (293)
T ss_pred -------------c------------------CcccceEEechhheEeCCCCCCHHHHhhchHHHHHHHHHHHHHhccCC
Confidence 1 289999999999999999999999999998899999998877788999
Q ss_pred CCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcC
Q 025895 195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCV 239 (246)
Q Consensus 195 ~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg 239 (246)
+++|+|+|+ |.+|++++++++.+|+ +++++.+++++.+.++++|
T Consensus 109 g~~vlv~g~~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~~ 153 (293)
T cd05195 109 GESVLIHAAAGGVGQAAIQLAQHLGA-EVFATVGSEEKREFLRELG 153 (293)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhC
Confidence 999999976 9999999999999999 8999999999999988887
No 124
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=99.85 E-value=4.4e-20 Score=156.73 Aligned_cols=148 Identities=26% Similarity=0.306 Sum_probs=133.8
Q ss_pred EEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccC
Q 025895 39 IKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRG 118 (246)
Q Consensus 39 Vkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~ 118 (246)
||+.++++|+.|...+.+.++ .|.++|||++|+|+++|++++.+++||+|....
T Consensus 2 i~v~~~~i~~~d~~~~~g~~~---~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~----------------------- 55 (288)
T smart00829 2 VEVRAAGLNFRDVLIALGLLP---GEAVLGGECAGVVTRVGPGVTGLAVGDRVMGLA----------------------- 55 (288)
T ss_pred eeEEEEecCHHHHHHhcCCCC---CCCCCCceeEEEEEeeCCCCcCCCCCCEEEEEc-----------------------
Confidence 799999999999998877643 357899999999999999999999999998541
Q ss_pred CCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCCchhhhhccccchhhhhhhhhhCCCCCCCEE
Q 025895 119 ATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIV 198 (246)
Q Consensus 119 ~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~V 198 (246)
+ |+|++|+.++.+.++++|+++++.+++.+.+.+.++|.++.+...+.++++|
T Consensus 56 ---------~------------------g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~v 108 (288)
T smart00829 56 ---------P------------------GSFATYVRTDARLVVPIPDGLSFEEAATVPVVFLTAYYALVDLARLRPGESV 108 (288)
T ss_pred ---------C------------------CceeeEEEccHHHeEECCCCCCHHHHHhchHHHHHHHHHHHHHhCCCCCCEE
Confidence 1 2899999999999999999999999999999999999987677889999999
Q ss_pred EEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCC
Q 025895 199 AVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVS 240 (246)
Q Consensus 199 lI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~ 240 (246)
+|+|+ |.+|++++++++.+|+ +|+++++++++++.++++|+
T Consensus 109 lv~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~ 150 (288)
T smart00829 109 LIHAAAGGVGQAAIQLAQHLGA-EVFATAGSPEKRDFLRELGI 150 (288)
T ss_pred EEecCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCC
Confidence 99986 9999999999999999 89999999999999999987
No 125
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=99.76 E-value=8.9e-18 Score=143.32 Aligned_cols=124 Identities=34% Similarity=0.421 Sum_probs=113.0
Q ss_pred CCCcccccceEEEEEEcCCCCCccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCccee
Q 025895 62 LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIY 141 (246)
Q Consensus 62 ~~p~v~G~e~vG~V~~vG~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~ 141 (246)
++|.++|||++|+|+++|++++++++||+|+...
T Consensus 19 ~~p~v~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~---------------------------------------------- 52 (277)
T cd08255 19 PLPLPPGYSSVGRVVEVGSGVTGFKPGDRVFCFG---------------------------------------------- 52 (277)
T ss_pred cCCcccCcceeEEEEEeCCCCCCCCCCCEEEecC----------------------------------------------
Confidence 5889999999999999999999999999997431
Q ss_pred eccCCcceeeeEEeecCceEEcCCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCe
Q 025895 142 HFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASR 221 (246)
Q Consensus 142 ~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~ 221 (246)
.|++|+.++.+.++++|+++++.+++.+ +.+.++|+++ ...+++++++++|+|+|.+|++++++|+.+|+.+
T Consensus 53 ------~~~~~~~v~~~~~~~ip~~l~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~ 124 (277)
T cd08255 53 ------PHAERVVVPANLLVPLPDGLPPERAALT-ALAATALNGV-RDAEPRLGERVAVVGLGLVGLLAAQLAKAAGARE 124 (277)
T ss_pred ------CcceEEEcCHHHeeECcCCCCHHHhHHH-HHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Confidence 5899999999999999999999998888 7889999976 4688999999999988999999999999999943
Q ss_pred EEEEcCChhHHHHHhhcC
Q 025895 222 VIGIDIDPKKFDRGMSCV 239 (246)
Q Consensus 222 vi~~~~~~~~~~~~~~lg 239 (246)
|+++++++++.++++++|
T Consensus 125 vi~~~~~~~~~~~~~~~g 142 (277)
T cd08255 125 VVGVDPDAARRELAEALG 142 (277)
T ss_pred EEEECCCHHHHHHHHHcC
Confidence 999999999999999998
No 126
>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]
Probab=99.71 E-value=1.2e-15 Score=128.12 Aligned_cols=183 Identities=23% Similarity=0.235 Sum_probs=133.1
Q ss_pred cceeeeEeecCCCC------eEE--EEeec-CCCCCCeEEEEEeeeecchhhhhhhcCCCCC-CCCCccccc----ceEE
Q 025895 8 ITCKAAVAWEPNKP------LVI--EDVQV-APPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGH----EAAG 73 (246)
Q Consensus 8 ~~~ka~~~~~~~~~------~~~--~e~~~-p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~-~~~p~v~G~----e~vG 73 (246)
.+.|++++...-.. |.+ .+.+. .+++.++|+||.+|.+..|...-.+....+. -..|+.+|- .++|
T Consensus 2 v~nkqvvLk~y~~g~P~~~d~~~~~~~~el~~~~~s~~vlvknlYLS~DPymR~rM~~~~~~~y~~~~~~G~pi~g~GV~ 81 (343)
T KOG1196|consen 2 VTNKQVILKNYVTGFPTESDFEFTTTTVELRVPLGSGEVLVKNLYLSCDPYMRIRMGKPDPSDYAPPYEPGKPIDGFGVA 81 (343)
T ss_pred ccccEEEEeccCCCCCccccceeeeeeecccCCCCCccEEeEeeeecCCHHHHhhccCCCcccccCcccCCcEecCCceE
Confidence 34566776652211 333 33443 4468999999999999988865544332222 122333332 6799
Q ss_pred EEEEcCCCCCccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeE
Q 025895 74 IVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYT 153 (246)
Q Consensus 74 ~V~~vG~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~ 153 (246)
+|++. +..++++||.|... . +|.+|.
T Consensus 82 kVi~S--~~~~~~~GD~v~g~------------------------------~----------------------gWeeys 107 (343)
T KOG1196|consen 82 KVIDS--GHPNYKKGDLVWGI------------------------------V----------------------GWEEYS 107 (343)
T ss_pred EEEec--CCCCCCcCceEEEe------------------------------c----------------------cceEEE
Confidence 99996 55679999999533 2 699999
Q ss_pred EeecC--ceEEcCC--CCCchhh-hhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcC
Q 025895 154 VVHDV--SVAKIDP--QAPLDKV-CLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI 227 (246)
Q Consensus 154 ~~~~~--~~~~ip~--~~~~~~a-a~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~ 227 (246)
++..+ ..++|+. +.++... ..+.++..|||..+++....++|++|+|-|| |.+|+++.|+|+.+|+ .||+...
T Consensus 108 ii~~~~~~~~ki~~~~~~pLs~ylg~lGm~glTAy~Gf~ei~~pk~geTv~VSaAsGAvGql~GQ~Ak~~Gc-~VVGsaG 186 (343)
T KOG1196|consen 108 VITPNDLEHFKIQHPTDVPLSYYLGLLGMPGLTAYAGFYEICSPKKGETVFVSAASGAVGQLVGQFAKLMGC-YVVGSAG 186 (343)
T ss_pred EecCcchhcccCCCCCccCHhhhhhccCCchhHHHHHHHHhcCCCCCCEEEEeeccchhHHHHHHHHHhcCC-EEEEecC
Confidence 99654 4455543 4444333 3478899999999999999999999999988 9999999999999999 9999999
Q ss_pred ChhHHHHHhh-cCCC--cccc
Q 025895 228 DPKKFDRGMS-CVSS--SKYH 245 (246)
Q Consensus 228 ~~~~~~~~~~-lg~~--~~~~ 245 (246)
+++|.++++. +|.| ++|+
T Consensus 187 S~EKv~ll~~~~G~d~afNYK 207 (343)
T KOG1196|consen 187 SKEKVDLLKTKFGFDDAFNYK 207 (343)
T ss_pred ChhhhhhhHhccCCccceecc
Confidence 9999998875 7888 6664
No 127
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=99.60 E-value=4.8e-15 Score=141.60 Aligned_cols=161 Identities=19% Similarity=0.205 Sum_probs=138.4
Q ss_pred eEEEEeecC---CCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCC-------cccccceEEEEEEcCCCCCccCCCCEE
Q 025895 22 LVIEDVQVA---PPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFP-------CILGHEAAGIVESVGEGVTEVQPGDHV 91 (246)
Q Consensus 22 ~~~~e~~~p---~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p-------~v~G~e~vG~V~~vG~~~~~~~~Gd~V 91 (246)
+++.|-|.. +..++.=+.-|.|+.||..|+....|+.++...| +++|-|++|| .+-|.||
T Consensus 1429 lrWies~~~~a~~~~~~~e~CtVYYAplNFRDiMLasGkL~~DAiPG~~a~qdclLGmEFsGR----------d~~GrRv 1498 (2376)
T KOG1202|consen 1429 LRWIESPLRHAQPTCPGLELCTVYYAPLNFRDIMLASGKLSPDAIPGDLASQDCLLGMEFSGR----------DASGRRV 1498 (2376)
T ss_pred eeeeecchhhcCCCCCCCceeEEEeccccHHHHHHhcCCCCcccCCCccchhhheeceeeccc----------cCCCcEE
Confidence 667776654 2467777899999999999999999988766544 7889999888 4569999
Q ss_pred EeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCCchh
Q 025895 92 IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDK 171 (246)
Q Consensus 92 ~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~ 171 (246)
+.... .. +.++.+.++.+.+|.+|.+...++
T Consensus 1499 M~mvp-------------------------------Ak------------------sLATt~l~~rd~lWevP~~WTlee 1529 (2376)
T KOG1202|consen 1499 MGMVP-------------------------------AK------------------SLATTVLASRDFLWEVPSKWTLEE 1529 (2376)
T ss_pred EEeee-------------------------------hh------------------hhhhhhhcchhhhhhCCcccchhh
Confidence 75531 11 688888889999999999999999
Q ss_pred hhhccccchhhhhhhhhhCCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895 172 VCLLGCGVPTGLGAVWNTAKVEPGSIVAVF-GLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS 242 (246)
Q Consensus 172 aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~-Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~ 242 (246)
|++.++.+.|+|+|+..+.+.++|++|||+ |+|++|++||.+|.++|+ +|+.+..+.+|++.+.+.-+.+
T Consensus 1530 AstVP~VYsTaYYALVvRG~mkkGekiLIHaGsGGVGQAAIaiALa~G~-~VFTTVGSaEKRefL~~rFPqL 1600 (2376)
T KOG1202|consen 1530 ASTVPVVYSTAYYALVVRGQMKKGEKILIHAGSGGVGQAAIAIALAHGC-TVFTTVGSAEKREFLLKRFPQL 1600 (2376)
T ss_pred cccCceEeeeehhhhhhhccccCCcEEEEecCCCchhHHHHHHHHHcCC-EEEEecCcHHHHHHHHHhchhh
Confidence 999999999999999999999999999999 559999999999999999 9999999999999998766653
No 128
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=98.07 E-value=9.8e-06 Score=74.92 Aligned_cols=50 Identities=30% Similarity=0.311 Sum_probs=47.6
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS 242 (246)
Q Consensus 192 ~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~ 242 (246)
..++++|+|+|+|.+|+++++.|+.+|+ +|+++|.+++|++.++++|+++
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aeslGA~~ 211 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESMGAEF 211 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeE
Confidence 5689999999999999999999999999 8999999999999999999983
No 129
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.60 E-value=2e-06 Score=78.01 Aligned_cols=134 Identities=15% Similarity=0.149 Sum_probs=86.5
Q ss_pred cccccceEEEEEEcCCCCCccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeecc
Q 025895 65 CILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFM 144 (246)
Q Consensus 65 ~v~G~e~vG~V~~vG~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~ 144 (246)
..-|.|+++.+.+|++++++ +|+..+.. ||+|++| ...|..... .|.. .++
T Consensus 88 ~~~~~~a~~hl~~Va~GldS-----~V~GE~qI-~gQvk~a----~~~a~~~~~---~g~~-l~~--------------- 138 (417)
T TIGR01035 88 ILTGESAVEHLFRVASGLDS-----MVVGETQI-LGQVKNA----YKVAQEEKT---VGKV-LER--------------- 138 (417)
T ss_pred hcCchHHHHHHHHHHhhhhh-----hhcCChHH-HHHHHHH----HHHHHHcCC---chHH-HHH---------------
Confidence 34688999999999999876 44444544 8888888 333433222 1211 233
Q ss_pred CCcceeeeEEeecCceEE---c-CCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025895 145 GTSTFSQYTVVHDVSVAK---I-DPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGAS 220 (246)
Q Consensus 145 ~~g~~~~~~~~~~~~~~~---i-p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~ 220 (246)
.|++++.++. .+.. | +..+|...++. ....+..+..++++|+|+|+|.+|..+++.++..|+.
T Consensus 139 ---lf~~a~~~~k-~vr~~t~i~~~~vSv~~~Av---------~la~~~~~~l~~~~VlViGaG~iG~~~a~~L~~~G~~ 205 (417)
T TIGR01035 139 ---LFQKAFSVGK-RVRTETDISAGAVSISSAAV---------ELAERIFGSLKGKKALLIGAGEMGELVAKHLLRKGVG 205 (417)
T ss_pred ---HHHHHHHHhh-hhhhhcCCCCCCcCHHHHHH---------HHHHHHhCCccCCEEEEECChHHHHHHHHHHHHCCCC
Confidence 7888887765 3222 2 22233222221 1012333446679999999999999999999999976
Q ss_pred eEEEEcCChhHHH-HHhhcCC
Q 025895 221 RVIGIDIDPKKFD-RGMSCVS 240 (246)
Q Consensus 221 ~vi~~~~~~~~~~-~~~~lg~ 240 (246)
+|++++++.++.+ .++++|.
T Consensus 206 ~V~v~~rs~~ra~~la~~~g~ 226 (417)
T TIGR01035 206 KILIANRTYERAEDLAKELGG 226 (417)
T ss_pred EEEEEeCCHHHHHHHHHHcCC
Confidence 9999999988754 5566664
No 130
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.58 E-value=0.00024 Score=64.23 Aligned_cols=57 Identities=25% Similarity=0.331 Sum_probs=49.5
Q ss_pred hhhhhhCC-CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895 184 GAVWNTAK-VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS 241 (246)
Q Consensus 184 ~~l~~~~~-~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~ 241 (246)
.++.+..+ ..+|++|+|+|.|.+|+.+++.++.+|+ +|++++.++.|++.++.+|++
T Consensus 190 ~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~~G~~ 247 (413)
T cd00401 190 DGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAMEGYE 247 (413)
T ss_pred HHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHhcCCE
Confidence 33444434 4689999999999999999999999999 899999999999999999985
No 131
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=97.30 E-value=0.00062 Score=63.03 Aligned_cols=49 Identities=31% Similarity=0.342 Sum_probs=45.7
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS 242 (246)
Q Consensus 193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~ 242 (246)
.++++|+|+|+|.+|+.+++.++.+|+ .|++++.++++++.++++|++.
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~lGa~~ 210 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQSMGAEF 210 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeE
Confidence 467899999999999999999999999 7999999999999999999874
No 132
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.15 E-value=0.0004 Score=60.68 Aligned_cols=83 Identities=18% Similarity=0.135 Sum_probs=62.9
Q ss_pred CceEEcCCCCCchhhhhccccchhhhhhhhhhCC---CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHH-H
Q 025895 158 VSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAK---VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKF-D 233 (246)
Q Consensus 158 ~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~---~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~-~ 233 (246)
+.++++|+.+..+.++... +...++.++..... --++.+|+|+|+|.+|..+++.++..|...|++++++++|. +
T Consensus 139 ~~a~~~~k~vr~et~i~~~-~~sv~~~Av~~a~~~~~~l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~ 217 (311)
T cd05213 139 QKAIKVGKRVRTETGISRG-AVSISSAAVELAEKIFGNLKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEE 217 (311)
T ss_pred HHHHHHHHHHhhhcCCCCC-CcCHHHHHHHHHHHHhCCccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 5677888888888777654 55556665432222 14689999999999999999999998877899999998875 5
Q ss_pred HHhhcCCC
Q 025895 234 RGMSCVSS 241 (246)
Q Consensus 234 ~~~~lg~~ 241 (246)
++.++|+.
T Consensus 218 la~~~g~~ 225 (311)
T cd05213 218 LAKELGGN 225 (311)
T ss_pred HHHHcCCe
Confidence 66777764
No 133
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=96.98 E-value=0.0038 Score=52.76 Aligned_cols=82 Identities=26% Similarity=0.367 Sum_probs=54.2
Q ss_pred ceeeeEEeecCceEEcCCCCCchhhhhccccchhhhhhhhhh-CCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEc
Q 025895 148 TFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNT-AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID 226 (246)
Q Consensus 148 ~~~~~~~~~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~-~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~ 226 (246)
+|.+|.. +...++.+++++++..+.-- .|.. ++... ....++++||-+|.|. |.+++.+++ .|+.+|+++|
T Consensus 78 ~~~~~~~-~~~~~i~i~p~~afgtg~h~----tt~~-~l~~l~~~~~~~~~VLDiGcGs-G~l~i~~~~-~g~~~v~giD 149 (250)
T PRK00517 78 SWEDPPD-PDEINIELDPGMAFGTGTHP----TTRL-CLEALEKLVLPGKTVLDVGCGS-GILAIAAAK-LGAKKVLAVD 149 (250)
T ss_pred CCcCCCC-CCeEEEEECCCCccCCCCCH----HHHH-HHHHHHhhcCCCCEEEEeCCcH-HHHHHHHHH-cCCCeEEEEE
Confidence 3555544 66778888888876654321 1111 11111 1256789999999986 888776555 6775799999
Q ss_pred CChhHHHHHhh
Q 025895 227 IDPKKFDRGMS 237 (246)
Q Consensus 227 ~~~~~~~~~~~ 237 (246)
.++..++.+++
T Consensus 150 is~~~l~~A~~ 160 (250)
T PRK00517 150 IDPQAVEAARE 160 (250)
T ss_pred CCHHHHHHHHH
Confidence 99998877654
No 134
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.95 E-value=0.0034 Score=47.92 Aligned_cols=44 Identities=27% Similarity=0.340 Sum_probs=39.3
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS 237 (246)
Q Consensus 194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~ 237 (246)
.+++++|+|+|++|.+++..+...|+++|+++.|+.+|.+.+.+
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~ 54 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAE 54 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHH
Confidence 56899999999999999999999999889999999998776543
No 135
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=96.85 E-value=0.0039 Score=56.67 Aligned_cols=58 Identities=29% Similarity=0.357 Sum_probs=47.0
Q ss_pred hhhhhhhCCCC-CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895 183 LGAVWNTAKVE-PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS 241 (246)
Q Consensus 183 ~~~l~~~~~~~-~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~ 241 (246)
|.++.+..++. .|++|+|+|.|.+|..+++.++.+|+ +|++++.++.|...+...|++
T Consensus 199 ~~ai~rat~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp~ra~~A~~~G~~ 257 (425)
T PRK05476 199 LDGIKRATNVLIAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDPICALQAAMDGFR 257 (425)
T ss_pred HHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCchhhHHHHhcCCE
Confidence 44444443444 89999999999999999999999999 899999999887776666654
No 136
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=96.83 E-value=0.0023 Score=60.42 Aligned_cols=52 Identities=23% Similarity=0.274 Sum_probs=44.1
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC---------------------hhHHHHHhhcCCCcc
Q 025895 191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID---------------------PKKFDRGMSCVSSSK 243 (246)
Q Consensus 191 ~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~---------------------~~~~~~~~~lg~~~~ 243 (246)
..+.+++|+|+|+|+.|+.+++.++..|+ +|++++.. +++++.++++|+++.
T Consensus 133 ~~~~g~~V~VIGaGpaGL~aA~~l~~~G~-~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~ 205 (564)
T PRK12771 133 APDTGKRVAVIGGGPAGLSAAYHLRRMGH-AVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVR 205 (564)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEE
Confidence 46789999999999999999999999999 79889743 456778888998744
No 137
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=96.69 E-value=0.0062 Score=55.03 Aligned_cols=49 Identities=31% Similarity=0.349 Sum_probs=43.4
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS 241 (246)
Q Consensus 192 ~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~ 241 (246)
...|++|+|+|.|.+|+.+++.++.+|+ +|++++.++.|...++..|+.
T Consensus 192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp~r~~~A~~~G~~ 240 (406)
T TIGR00936 192 LIAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDPIRALEAAMDGFR 240 (406)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCChhhHHHHHhcCCE
Confidence 3689999999999999999999999999 899999998887777777764
No 138
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.67 E-value=0.0089 Score=51.88 Aligned_cols=47 Identities=32% Similarity=0.316 Sum_probs=43.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS 241 (246)
Q Consensus 194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~ 241 (246)
.+++++|+|.|.+|+.+++.++.+|+ +|+++++++++++.++++|+.
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~~~~~~~~~~~G~~ 197 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARKSAHLARITEMGLS 197 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCe
Confidence 57899999999999999999999999 999999999988888888765
No 139
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=96.43 E-value=0.0046 Score=56.37 Aligned_cols=136 Identities=18% Similarity=0.152 Sum_probs=80.8
Q ss_pred cccccceEEEEEEcCCCCCccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeecc
Q 025895 65 CILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFM 144 (246)
Q Consensus 65 ~v~G~e~vG~V~~vG~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~ 144 (246)
..-|||+++.+.+|+++.++.-+|+.-+ |++|+.. ...|..... .|.. .++
T Consensus 90 ~~~g~ea~~hl~~V~~GldS~V~GE~qI------lgQvk~a----~~~a~~~g~---~g~~-l~~--------------- 140 (423)
T PRK00045 90 VHEGEEAVRHLFRVASGLDSMVLGEPQI------LGQVKDA----YALAQEAGT---VGTI-LNR--------------- 140 (423)
T ss_pred hcCCHHHHHHHHHHHhhhhhhhcCChHH------HHHHHHH----HHHHHHcCC---chHH-HHH---------------
Confidence 3469999999999999988765565433 3333321 111211110 0100 111
Q ss_pred CCcceeeeEEeecCceEEcCCCCCchhhhhccccchhhhhhhhhhC---CCCCCCEEEEECCCHHHHHHHHHHHHcCCCe
Q 025895 145 GTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTA---KVEPGSIVAVFGLGTVGLAVAEGAKAAGASR 221 (246)
Q Consensus 145 ~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~---~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~ 221 (246)
.|++.+.+ |+.+..+.+.. ..+...++.++.... +-.++++|+|+|+|.+|.++++.++..|+.+
T Consensus 141 ---lf~~a~~~--------~k~v~~~t~i~-~~~~Sv~~~Av~~a~~~~~~~~~~~vlViGaG~iG~~~a~~L~~~G~~~ 208 (423)
T PRK00045 141 ---LFQKAFSV--------AKRVRTETGIG-AGAVSVASAAVELAKQIFGDLSGKKVLVIGAGEMGELVAKHLAEKGVRK 208 (423)
T ss_pred ---HHHHHHHH--------HhhHhhhcCCC-CCCcCHHHHHHHHHHHhhCCccCCEEEEECchHHHHHHHHHHHHCCCCe
Confidence 45444333 33333222222 123444555542221 2256789999999999999999999999878
Q ss_pred EEEEcCChhHHH-HHhhcCCC
Q 025895 222 VIGIDIDPKKFD-RGMSCVSS 241 (246)
Q Consensus 222 vi~~~~~~~~~~-~~~~lg~~ 241 (246)
|++++++.++.+ ++.++|.+
T Consensus 209 V~v~~r~~~ra~~la~~~g~~ 229 (423)
T PRK00045 209 ITVANRTLERAEELAEEFGGE 229 (423)
T ss_pred EEEEeCCHHHHHHHHHHcCCc
Confidence 999999988865 66667643
No 140
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=96.40 E-value=0.012 Score=46.61 Aligned_cols=45 Identities=36% Similarity=0.353 Sum_probs=39.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS 241 (246)
Q Consensus 196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~ 241 (246)
.+|+|+|+|.+|+.|+.+++.+|+ +++..+...++++....+++.
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~lGa-~v~~~d~~~~~~~~~~~~~~~ 65 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGLGA-EVVVPDERPERLRQLESLGAY 65 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHTT--EEEEEESSHHHHHHHHHTTTE
T ss_pred eEEEEECCCHHHHHHHHHHhHCCC-EEEeccCCHHHHHhhhcccCc
Confidence 789999999999999999999999 999999999998888877765
No 141
>PLN02494 adenosylhomocysteinase
Probab=96.33 E-value=0.013 Score=53.62 Aligned_cols=57 Identities=32% Similarity=0.404 Sum_probs=46.2
Q ss_pred hhhhhhCCC-CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895 184 GAVWNTAKV-EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS 241 (246)
Q Consensus 184 ~~l~~~~~~-~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~ 241 (246)
.++.+..++ -.|++|+|+|.|.+|..+++.++.+|+ +|++++.++.+...+...|+.
T Consensus 242 d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~r~~eA~~~G~~ 299 (477)
T PLN02494 242 DGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPICALQALMEGYQ 299 (477)
T ss_pred HHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhHHHHhcCCe
Confidence 334444443 678999999999999999999999999 899999998887677666664
No 142
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.06 E-value=0.017 Score=53.65 Aligned_cols=50 Identities=30% Similarity=0.306 Sum_probs=42.9
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895 191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS 241 (246)
Q Consensus 191 ~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~ 241 (246)
.+.++++|+|+|.|.+|++++.+++..|+ +|+++|.++++.+.++++|..
T Consensus 8 ~~~~~~~v~V~G~G~sG~aa~~~L~~~G~-~v~~~D~~~~~~~~l~~~g~~ 57 (488)
T PRK03369 8 PLLPGAPVLVAGAGVTGRAVLAALTRFGA-RPTVCDDDPDALRPHAERGVA 57 (488)
T ss_pred cccCCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHhCCCE
Confidence 35578899999999999999999999999 899999887777767777764
No 143
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=95.96 E-value=0.02 Score=51.25 Aligned_cols=46 Identities=26% Similarity=0.271 Sum_probs=39.0
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh-cCC
Q 025895 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS-CVS 240 (246)
Q Consensus 194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~-lg~ 240 (246)
++.+|+|+|+|.+|+.+++.++.+|+ +|+++++++++++.+.. ++.
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~l~~~~g~ 212 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINIDRLRQLDAEFGG 212 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcCc
Confidence 34569999999999999999999999 89999999988876653 444
No 144
>PF13823 ADH_N_assoc: Alcohol dehydrogenase GroES-associated; PDB: 2DPH_B.
Probab=95.92 E-value=0.0082 Score=31.09 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=16.1
Q ss_pred eeeeEeecCCCCeEEEEeecCCC
Q 025895 10 CKAAVAWEPNKPLVIEDVQVAPP 32 (246)
Q Consensus 10 ~ka~~~~~~~~~~~~~e~~~p~~ 32 (246)
|||++++++++ ++++++|.|.+
T Consensus 1 MkAv~y~G~~~-v~ve~VpdP~I 22 (23)
T PF13823_consen 1 MKAVVYHGPKD-VRVEEVPDPKI 22 (23)
T ss_dssp -EEEEEEETTE-EEEEEE----S
T ss_pred CcceEEeCCCc-eEEEECCCccc
Confidence 89999999999 99999999875
No 145
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=95.73 E-value=0.032 Score=47.58 Aligned_cols=49 Identities=29% Similarity=0.572 Sum_probs=41.1
Q ss_pred hCCCCCCCEEEEECCCHHHHHHHHHHHHcCCC-eEEEEcCChhHHHHHhhc
Q 025895 189 TAKVEPGSIVAVFGLGTVGLAVAEGAKAAGAS-RVIGIDIDPKKFDRGMSC 238 (246)
Q Consensus 189 ~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~-~vi~~~~~~~~~~~~~~l 238 (246)
...++++++||.+|.|. |..++++++..|.. +|+++|.+++.++.+++.
T Consensus 72 ~~~~~~g~~VLDiG~G~-G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~ 121 (272)
T PRK11873 72 LAELKPGETVLDLGSGG-GFDCFLAARRVGPTGKVIGVDMTPEMLAKARAN 121 (272)
T ss_pred hccCCCCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHH
Confidence 35688999999999977 88888888887762 699999999999888763
No 146
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=95.60 E-value=0.039 Score=47.71 Aligned_cols=46 Identities=30% Similarity=0.332 Sum_probs=40.7
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCC
Q 025895 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVS 240 (246)
Q Consensus 194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~ 240 (246)
.+++++|+|.|.+|...+..++.+|+ +|+++++++++.+.+.++|.
T Consensus 150 ~gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R~~~~~~~~~~~g~ 195 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTIARTFSALGA-RVFVGARSSADLARITEMGL 195 (287)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHCCC
Confidence 46899999999999999999999999 99999999988777766664
No 147
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=95.53 E-value=0.06 Score=46.43 Aligned_cols=43 Identities=28% Similarity=0.333 Sum_probs=37.8
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHh
Q 025895 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM 236 (246)
Q Consensus 194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~ 236 (246)
.+++|+|+|+|+.|.+++..+...|+.+|++++++.+|.+.+.
T Consensus 126 ~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la 168 (284)
T PRK12549 126 SLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALA 168 (284)
T ss_pred cCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence 4578999999999999999999999989999999998876553
No 148
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=95.49 E-value=0.066 Score=45.89 Aligned_cols=46 Identities=26% Similarity=0.233 Sum_probs=39.0
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHh
Q 025895 191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM 236 (246)
Q Consensus 191 ~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~ 236 (246)
....+++++|+|+|+.+.+++..+..+|+.+|+++.|+++|.+.+.
T Consensus 118 ~~~~~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la 163 (272)
T PRK12550 118 QVPPDLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALA 163 (272)
T ss_pred CCCCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHH
Confidence 3444568999999999999999999999988999999998877554
No 149
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=95.47 E-value=0.046 Score=47.09 Aligned_cols=44 Identities=25% Similarity=0.317 Sum_probs=39.8
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS 237 (246)
Q Consensus 194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~ 237 (246)
.+++++|+|+|+.+.+++..++..|+.+|+++.|+.+|.+.+.+
T Consensus 125 ~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~ 168 (283)
T COG0169 125 TGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELAD 168 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Confidence 57899999999999999999999998899999999998776654
No 150
>PRK08324 short chain dehydrogenase; Validated
Probab=95.46 E-value=0.035 Score=53.74 Aligned_cols=77 Identities=23% Similarity=0.292 Sum_probs=54.2
Q ss_pred ceeeeEEeecCceEEcCCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEc
Q 025895 148 TFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGID 226 (246)
Q Consensus 148 ~~~~~~~~~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~ 226 (246)
++++|..+|...++.+ +..+.+++..... ......+++++||+|+ |++|...++.+...|+ +|++++
T Consensus 386 ~~~~~~~l~~~~~f~i-~~~~~e~a~l~~~----------~~~~~l~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~ 453 (681)
T PRK08324 386 AVGRYEPLSEQEAFDI-EYWSLEQAKLQRM----------PKPKPLAGKVALVTGAAGGIGKATAKRLAAEGA-CVVLAD 453 (681)
T ss_pred hcCCccCCChhhhcce-eeehhhhhhhhcC----------CCCcCCCCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEe
Confidence 4667777776666666 5555555542110 0122336789999997 9999999999999999 899999
Q ss_pred CChhHHHHHh
Q 025895 227 IDPKKFDRGM 236 (246)
Q Consensus 227 ~~~~~~~~~~ 236 (246)
+++++.+.+.
T Consensus 454 r~~~~~~~~~ 463 (681)
T PRK08324 454 LDEEAAEAAA 463 (681)
T ss_pred CCHHHHHHHH
Confidence 9988766543
No 151
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=95.38 E-value=0.078 Score=48.78 Aligned_cols=49 Identities=31% Similarity=0.364 Sum_probs=40.8
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS 241 (246)
Q Consensus 192 ~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~ 241 (246)
.-.|++|+|+|.|.+|...++.++.+|+ +|+++++++.+...+...|+.
T Consensus 251 ~LaGKtVgVIG~G~IGr~vA~rL~a~Ga-~ViV~e~dp~~a~~A~~~G~~ 299 (476)
T PTZ00075 251 MIAGKTVVVCGYGDVGKGCAQALRGFGA-RVVVTEIDPICALQAAMEGYQ 299 (476)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhHHHHHhcCce
Confidence 4578999999999999999999999999 899998887776555555553
No 152
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=95.33 E-value=0.051 Score=46.81 Aligned_cols=43 Identities=23% Similarity=0.298 Sum_probs=37.9
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHh
Q 025895 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM 236 (246)
Q Consensus 194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~ 236 (246)
.+++++|+|+|+.+.+++..+..+|+++|+++.|+.+|.+.+.
T Consensus 124 ~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La 166 (282)
T TIGR01809 124 AGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLV 166 (282)
T ss_pred CCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Confidence 4678999999999999999999999989999999988876553
No 153
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=95.27 E-value=0.053 Score=43.32 Aligned_cols=46 Identities=39% Similarity=0.500 Sum_probs=38.4
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcC
Q 025895 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCV 239 (246)
Q Consensus 193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg 239 (246)
-.+.+|.|+|.|.+|...++.++.+|+ +|++++++....+...+.+
T Consensus 34 l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~~~~~~~~~~~ 79 (178)
T PF02826_consen 34 LRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSPKPEEGADEFG 79 (178)
T ss_dssp STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSCHHHHHHHHTT
T ss_pred cCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccCChhhhccccc
Confidence 457999999999999999999999999 9999999988766444443
No 154
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=95.21 E-value=0.072 Score=43.50 Aligned_cols=47 Identities=36% Similarity=0.461 Sum_probs=40.1
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhc-CC
Q 025895 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSC-VS 240 (246)
Q Consensus 193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~l-g~ 240 (246)
-.+.+++|+|.|.+|..+++.+...|+ +|+++++++++.+.+++. |+
T Consensus 26 l~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~~~~~~~~~~~~g~ 73 (200)
T cd01075 26 LEGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADINEEAVARAAELFGA 73 (200)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHcCC
Confidence 356899999999999999999999999 999999999887766543 54
No 155
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=95.14 E-value=0.068 Score=45.90 Aligned_cols=44 Identities=14% Similarity=0.153 Sum_probs=38.0
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHh
Q 025895 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM 236 (246)
Q Consensus 193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~ 236 (246)
..+++++|+|+|++|.+++..+...|+.+|+++.++.++.+.+.
T Consensus 121 ~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~ 164 (278)
T PRK00258 121 LKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELA 164 (278)
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH
Confidence 35678999999999999999999999669999999998876554
No 156
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=95.06 E-value=0.1 Score=44.98 Aligned_cols=43 Identities=26% Similarity=0.234 Sum_probs=37.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHh
Q 025895 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM 236 (246)
Q Consensus 194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~ 236 (246)
.+++++|+|+|+.+.+++..+...|+.+++++.++.+|.+.+.
T Consensus 126 ~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La 168 (283)
T PRK14027 126 KLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALA 168 (283)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHH
Confidence 4678999999999999988888899989999999988866554
No 157
>PRK06949 short chain dehydrogenase; Provisional
Probab=95.01 E-value=0.078 Score=44.25 Aligned_cols=42 Identities=21% Similarity=0.246 Sum_probs=36.1
Q ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895 193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG 235 (246)
Q Consensus 193 ~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~ 235 (246)
..+++++|+|+ |.+|...+..+...|+ +|+++++++++++.+
T Consensus 7 ~~~k~ilItGasg~IG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~ 49 (258)
T PRK06949 7 LEGKVALVTGASSGLGARFAQVLAQAGA-KVVLASRRVERLKEL 49 (258)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 44689999998 9999999999999999 899999998876544
No 158
>PRK04148 hypothetical protein; Provisional
Probab=94.96 E-value=0.081 Score=40.33 Aligned_cols=48 Identities=25% Similarity=0.316 Sum_probs=38.4
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS 241 (246)
Q Consensus 192 ~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~ 241 (246)
...+.+++++|.| .|...+..+..+|+ .|+++|.+++..+.+++.+.+
T Consensus 14 ~~~~~kileIG~G-fG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~~~~ 61 (134)
T PRK04148 14 KGKNKKIVELGIG-FYFKVAKKLKESGF-DVIVIDINEKAVEKAKKLGLN 61 (134)
T ss_pred cccCCEEEEEEec-CCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhCCe
Confidence 3456789999999 88755555557898 999999999999988877654
No 159
>PRK05872 short chain dehydrogenase; Provisional
Probab=94.85 E-value=0.087 Score=45.40 Aligned_cols=45 Identities=22% Similarity=0.333 Sum_probs=37.5
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH-hhcC
Q 025895 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG-MSCV 239 (246)
Q Consensus 194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~-~~lg 239 (246)
.++++||+|+ |++|...++.+...|+ +|+++++++++++.+ ++++
T Consensus 8 ~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~l~~~~~~l~ 54 (296)
T PRK05872 8 AGKVVVVTGAARGIGAELARRLHARGA-KLALVDLEEAELAALAAELG 54 (296)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhc
Confidence 4689999998 9999999999999999 899999998877654 3344
No 160
>PRK07814 short chain dehydrogenase; Provisional
Probab=94.76 E-value=0.096 Score=44.12 Aligned_cols=41 Identities=24% Similarity=0.259 Sum_probs=35.1
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG 235 (246)
Q Consensus 194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~ 235 (246)
+++++||+|+ |++|...++.+...|+ +|+.+++++++.+.+
T Consensus 9 ~~~~vlItGasggIG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~ 50 (263)
T PRK07814 9 DDQVAVVTGAGRGLGAAIALAFAEAGA-DVLIAARTESQLDEV 50 (263)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 4688999998 8999999998888999 999999988776543
No 161
>PRK12829 short chain dehydrogenase; Provisional
Probab=94.66 E-value=0.1 Score=43.64 Aligned_cols=45 Identities=31% Similarity=0.289 Sum_probs=37.6
Q ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895 192 VEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS 237 (246)
Q Consensus 192 ~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~ 237 (246)
.-++.++||+|+ |.+|...+..+...|+ +|+++++++++.+.+.+
T Consensus 8 ~~~~~~vlItGa~g~iG~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~ 53 (264)
T PRK12829 8 PLDGLRVLVTGGASGIGRAIAEAFAEAGA-RVHVCDVSEAALAATAA 53 (264)
T ss_pred ccCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence 346789999998 9999999999999999 89999998876665543
No 162
>PRK05867 short chain dehydrogenase; Provisional
Probab=94.51 E-value=0.12 Score=43.14 Aligned_cols=41 Identities=22% Similarity=0.177 Sum_probs=35.2
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG 235 (246)
Q Consensus 194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~ 235 (246)
.++++||+|+ +++|...+..+...|+ +|+.+++++++.+.+
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~ 49 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKL 49 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHH
Confidence 4688999998 8999999999989999 899999988776544
No 163
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=94.51 E-value=0.12 Score=48.75 Aligned_cols=47 Identities=17% Similarity=0.127 Sum_probs=40.0
Q ss_pred hhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895 188 NTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG 235 (246)
Q Consensus 188 ~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~ 235 (246)
...+.+.+++|||+|+ |.+|...++.+...|+ +|++++++.++.+.+
T Consensus 73 ~~~~~~~gKvVLVTGATGgIG~aLAr~LLk~G~-~Vval~Rn~ekl~~l 120 (576)
T PLN03209 73 KELDTKDEDLAFVAGATGKVGSRTVRELLKLGF-RVRAGVRSAQRAESL 120 (576)
T ss_pred cccccCCCCEEEEECCCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHH
Confidence 3556778899999998 9999999999988999 899999998887543
No 164
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=94.46 E-value=0.17 Score=43.65 Aligned_cols=36 Identities=22% Similarity=0.339 Sum_probs=31.6
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (246)
Q Consensus 194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~ 229 (246)
.+++++|+|+|++|.+++..+...|+++|+++.+++
T Consensus 125 ~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 125 KGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 467899999999999988888889996799999986
No 165
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=94.46 E-value=0.13 Score=43.03 Aligned_cols=40 Identities=40% Similarity=0.478 Sum_probs=34.1
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 025895 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234 (246)
Q Consensus 194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~ 234 (246)
.++++||+|+ |.+|...++.+...|+ +|+.+++++++.+.
T Consensus 9 ~~k~vlItGa~g~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~ 49 (255)
T PRK07523 9 TGRRALVTGSSQGIGYALAEGLAQAGA-EVILNGRDPAKLAA 49 (255)
T ss_pred CCCEEEEECCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHH
Confidence 4689999988 9999999988888899 89999998876543
No 166
>PRK07060 short chain dehydrogenase; Provisional
Probab=94.44 E-value=0.13 Score=42.51 Aligned_cols=42 Identities=31% Similarity=0.375 Sum_probs=35.9
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHh
Q 025895 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM 236 (246)
Q Consensus 194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~ 236 (246)
++++++|+|+ |.+|...++.+...|+ +|+++++++++.+.+.
T Consensus 8 ~~~~~lItGa~g~iG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~ 50 (245)
T PRK07060 8 SGKSVLVTGASSGIGRACAVALAQRGA-RVVAAARNAAALDRLA 50 (245)
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence 4578999998 8999999999999999 8999999887765543
No 167
>PLN02780 ketoreductase/ oxidoreductase
Probab=94.40 E-value=0.11 Score=45.46 Aligned_cols=41 Identities=22% Similarity=0.241 Sum_probs=35.2
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG 235 (246)
Q Consensus 194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~ 235 (246)
.|++++|+|+ +++|...+..+...|+ +|+.+++++++++.+
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~-~Vil~~R~~~~l~~~ 93 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGL-NLVLVARNPDKLKDV 93 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCC-CEEEEECCHHHHHHH
Confidence 5789999998 8999988877777899 899999999887654
No 168
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=94.40 E-value=0.17 Score=43.79 Aligned_cols=37 Identities=14% Similarity=0.262 Sum_probs=31.0
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 025895 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 230 (246)
Q Consensus 194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~ 230 (246)
.+++++|+|+|+.+.+++..+...|+++++++.|+++
T Consensus 123 ~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~ 159 (288)
T PRK12749 123 KGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE 159 (288)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCcc
Confidence 5578999999999988777677789989999999853
No 169
>PRK05866 short chain dehydrogenase; Provisional
Probab=94.39 E-value=0.13 Score=44.36 Aligned_cols=40 Identities=25% Similarity=0.315 Sum_probs=34.4
Q ss_pred CCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895 195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG 235 (246)
Q Consensus 195 ~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~ 235 (246)
++++||+|+ |++|...++.+...|+ +|+++++++++++.+
T Consensus 40 ~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R~~~~l~~~ 80 (293)
T PRK05866 40 GKRILLTGASSGIGEAAAEQFARRGA-TVVAVARREDLLDAV 80 (293)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence 478999998 9999999888888899 999999998876544
No 170
>PRK07576 short chain dehydrogenase; Provisional
Probab=94.36 E-value=0.14 Score=43.29 Aligned_cols=39 Identities=31% Similarity=0.368 Sum_probs=34.0
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHH
Q 025895 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233 (246)
Q Consensus 194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~ 233 (246)
+++++||+|+ |++|...++.+...|+ +|+.+++++++++
T Consensus 8 ~~k~ilItGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~ 47 (264)
T PRK07576 8 AGKNVVVVGGTSGINLGIAQAFARAGA-NVAVASRSQEKVD 47 (264)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence 5689999998 8999999998889999 8999999887654
No 171
>PRK07831 short chain dehydrogenase; Provisional
Probab=94.30 E-value=0.14 Score=43.03 Aligned_cols=43 Identities=33% Similarity=0.456 Sum_probs=35.8
Q ss_pred CCCCCEEEEECC-C-HHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895 192 VEPGSIVAVFGL-G-TVGLAVAEGAKAAGASRVIGIDIDPKKFDRG 235 (246)
Q Consensus 192 ~~~~~~VlI~Ga-g-~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~ 235 (246)
+..++++||+|+ | ++|...++.+...|+ +|+++++++++++..
T Consensus 14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~ 58 (262)
T PRK07831 14 LLAGKVVLVTAAAGTGIGSATARRALEEGA-RVVISDIHERRLGET 58 (262)
T ss_pred ccCCCEEEEECCCcccHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence 445689999987 6 799999999999999 899999888776544
No 172
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=94.26 E-value=0.13 Score=47.61 Aligned_cols=49 Identities=31% Similarity=0.355 Sum_probs=40.3
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh---------------------hHHHHHhhcCCCc
Q 025895 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP---------------------KKFDRGMSCVSSS 242 (246)
Q Consensus 193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~---------------------~~~~~~~~lg~~~ 242 (246)
+.+++|+|+|+|+.|+.++..++..|+ .|++++..+ ...+.++++|.++
T Consensus 139 ~~~~~V~IIG~GpaGl~aA~~l~~~G~-~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~ 208 (467)
T TIGR01318 139 PTGKRVAVIGAGPAGLACADILARAGV-QVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEF 208 (467)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEE
Confidence 367899999999999999999999999 788887664 2456778888764
No 173
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=94.19 E-value=0.16 Score=42.56 Aligned_cols=41 Identities=29% Similarity=0.397 Sum_probs=34.9
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG 235 (246)
Q Consensus 194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~ 235 (246)
.++++||+|+ |.+|...++.+...|+ +|+.++++.++++.+
T Consensus 11 ~~k~ilItGa~g~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~ 52 (259)
T PRK08213 11 SGKTALVTGGSRGLGLQIAEALGEAGA-RVVLSARKAEELEEA 52 (259)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence 3578999988 9999999988888999 899999988776544
No 174
>PRK05854 short chain dehydrogenase; Provisional
Probab=94.13 E-value=0.15 Score=44.34 Aligned_cols=41 Identities=32% Similarity=0.296 Sum_probs=34.4
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG 235 (246)
Q Consensus 194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~ 235 (246)
.+++++|+|+ +++|...+..+...|+ +|+.+.+++++.+.+
T Consensus 13 ~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~~~~~~~ 54 (313)
T PRK05854 13 SGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNRAKGEAA 54 (313)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 3578999998 8999998888888999 899999988776543
No 175
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=94.06 E-value=0.12 Score=49.79 Aligned_cols=36 Identities=33% Similarity=0.455 Sum_probs=32.1
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (246)
Q Consensus 193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~ 229 (246)
..+++|+|+|+|+.|+.++..+..+|+ +|++++..+
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~-~V~V~E~~~ 360 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGV-AVTVYDRHP 360 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCC
Confidence 357899999999999999999999999 899998754
No 176
>PRK06196 oxidoreductase; Provisional
Probab=94.03 E-value=0.16 Score=44.09 Aligned_cols=41 Identities=27% Similarity=0.293 Sum_probs=34.6
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG 235 (246)
Q Consensus 194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~ 235 (246)
.++++||+|+ |++|...+..+...|+ +|+++++++++.+.+
T Consensus 25 ~~k~vlITGasggIG~~~a~~L~~~G~-~Vv~~~R~~~~~~~~ 66 (315)
T PRK06196 25 SGKTAIVTGGYSGLGLETTRALAQAGA-HVIVPARRPDVAREA 66 (315)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 4578999998 8999998888888999 899999998776543
No 177
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=94.01 E-value=0.34 Score=37.21 Aligned_cols=47 Identities=21% Similarity=0.196 Sum_probs=37.1
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH-hhcC
Q 025895 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG-MSCV 239 (246)
Q Consensus 193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~-~~lg 239 (246)
..+.+++|+|.|.+|...++.+...|...|++++++.++.+.+ ++++
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~ 64 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFG 64 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHh
Confidence 4467899999999999999888888744899999998876653 3444
No 178
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=93.99 E-value=0.17 Score=42.03 Aligned_cols=42 Identities=24% Similarity=0.266 Sum_probs=35.4
Q ss_pred CCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHH
Q 025895 191 KVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233 (246)
Q Consensus 191 ~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~ 233 (246)
...+++++||+|+ |.+|...++.+...|+ +|++++++.++.+
T Consensus 8 ~~~~~k~vlItG~~g~iG~~la~~l~~~G~-~Vi~~~r~~~~~~ 50 (247)
T PRK08945 8 DLLKDRIILVTGAGDGIGREAALTYARHGA-TVILLGRTEEKLE 50 (247)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCC-cEEEEeCCHHHHH
Confidence 3557889999988 9999998888888899 8999999887654
No 179
>PRK06841 short chain dehydrogenase; Provisional
Probab=93.97 E-value=0.18 Score=42.02 Aligned_cols=43 Identities=30% Similarity=0.323 Sum_probs=35.3
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS 237 (246)
Q Consensus 194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~ 237 (246)
+++++||+|+ |.+|...++.+...|+ +|+.++++++..+...+
T Consensus 14 ~~k~vlItGas~~IG~~la~~l~~~G~-~Vi~~~r~~~~~~~~~~ 57 (255)
T PRK06841 14 SGKVAVVTGGASGIGHAIAELFAAKGA-RVALLDRSEDVAEVAAQ 57 (255)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence 4579999998 9999998888888999 89999998776554444
No 180
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=93.86 E-value=0.2 Score=41.80 Aligned_cols=40 Identities=23% Similarity=0.372 Sum_probs=34.1
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 025895 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234 (246)
Q Consensus 194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~ 234 (246)
++++++|+|+ |.+|...+..+...|+ +|+.+++++++++.
T Consensus 10 ~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~~~~~~~ 50 (256)
T PRK06124 10 AGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRNAATLEA 50 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCCHHHHHH
Confidence 4689999988 8999998888888899 89999998876543
No 181
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=93.83 E-value=0.14 Score=49.27 Aligned_cols=49 Identities=27% Similarity=0.249 Sum_probs=40.9
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChh---------------------HHHHHhhcCCCcc
Q 025895 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK---------------------KFDRGMSCVSSSK 243 (246)
Q Consensus 194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~---------------------~~~~~~~lg~~~~ 243 (246)
.+++|+|+|+|+.|+.++..++..|+ +|++++..+. +.++++++|.++.
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~-~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~ 378 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGV-QVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFH 378 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCC-cEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEE
Confidence 47999999999999999999999999 8998987763 4567777887643
No 182
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=93.79 E-value=0.12 Score=42.90 Aligned_cols=46 Identities=24% Similarity=0.355 Sum_probs=40.0
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895 191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS 237 (246)
Q Consensus 191 ~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~ 237 (246)
+..+-..|-|+|+|.+|.-.+|++...|+ .|+.++.+++.++++++
T Consensus 7 ~~~~~~~V~ivGaG~MGSGIAQv~a~sg~-~V~l~d~~~~aL~~A~~ 52 (298)
T KOG2304|consen 7 NMAEIKNVAIVGAGQMGSGIAQVAATSGL-NVWLVDANEDALSRATK 52 (298)
T ss_pred ccccccceEEEcccccchhHHHHHHhcCC-ceEEecCCHHHHHHHHH
Confidence 33444679999999999999999999999 99999999998887754
No 183
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=93.73 E-value=0.21 Score=41.60 Aligned_cols=40 Identities=25% Similarity=0.394 Sum_probs=34.0
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 025895 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234 (246)
Q Consensus 194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~ 234 (246)
.++++||+|+ |++|...+..+...|+ +|+.+++++++++.
T Consensus 8 ~~k~~lItGas~giG~~ia~~L~~~G~-~vvl~~r~~~~~~~ 48 (254)
T PRK08085 8 AGKNILITGSAQGIGFLLATGLAEYGA-EIIINDITAERAEL 48 (254)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEcCCHHHHHH
Confidence 3578999988 8999999988888999 89999998876543
No 184
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=93.70 E-value=0.29 Score=41.72 Aligned_cols=42 Identities=26% Similarity=0.200 Sum_probs=35.5
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG 235 (246)
Q Consensus 193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~ 235 (246)
..+++++|+|+|++|.+.+..+...|+ +|++++++++|.+.+
T Consensus 115 ~~~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~R~~~~~~~l 156 (270)
T TIGR00507 115 RPNQRVLIIGAGGAARAVALPLLKADC-NVIIANRTVSKAEEL 156 (270)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 457889999999999998888888898 899999998876544
No 185
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=93.51 E-value=0.36 Score=38.28 Aligned_cols=58 Identities=21% Similarity=0.138 Sum_probs=39.9
Q ss_pred ccccchhhhhhhhhhCCCCCCCEEEEECCCH-HHHHHHHHHHHcCCCeEEEEcCChhHHH
Q 025895 175 LGCGVPTGLGAVWNTAKVEPGSIVAVFGLGT-VGLAVAEGAKAAGASRVIGIDIDPKKFD 233 (246)
Q Consensus 175 l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~-~G~~ai~~a~~~G~~~vi~~~~~~~~~~ 233 (246)
.++...++...+.....--.+++|+|+|+|. +|..++..++..|+ +|+++.++.+.+.
T Consensus 24 ~p~~~~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r~~~~l~ 82 (168)
T cd01080 24 IPCTPAGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHSKTKNLK 82 (168)
T ss_pred cCChHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEECCchhHH
Confidence 3433333333333333345789999999986 59989999999999 7888888765443
No 186
>PRK09242 tropinone reductase; Provisional
Probab=93.42 E-value=0.26 Score=41.19 Aligned_cols=41 Identities=24% Similarity=0.361 Sum_probs=34.8
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG 235 (246)
Q Consensus 194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~ 235 (246)
.++++||+|+ |.+|...+..+...|+ +|+++++++++.+.+
T Consensus 8 ~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~ 49 (257)
T PRK09242 8 DGQTALITGASKGIGLAIAREFLGLGA-DVLIVARDADALAQA 49 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence 3678999998 8999999999989999 899999988776543
No 187
>PRK05717 oxidoreductase; Validated
Probab=93.40 E-value=0.26 Score=41.16 Aligned_cols=40 Identities=28% Similarity=0.383 Sum_probs=33.3
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 025895 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234 (246)
Q Consensus 194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~ 234 (246)
.++++||+|+ |.+|...+..+...|+ +|+.+++++++.+.
T Consensus 9 ~~k~vlItG~sg~IG~~~a~~l~~~g~-~v~~~~~~~~~~~~ 49 (255)
T PRK05717 9 NGRVALVTGAARGIGLGIAAWLIAEGW-QVVLADLDRERGSK 49 (255)
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHcCC-EEEEEcCCHHHHHH
Confidence 4678999988 9999998888888899 89999888765544
No 188
>PRK06197 short chain dehydrogenase; Provisional
Probab=93.37 E-value=0.22 Score=42.98 Aligned_cols=39 Identities=26% Similarity=0.264 Sum_probs=33.3
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHH
Q 025895 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233 (246)
Q Consensus 194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~ 233 (246)
.++++||+|+ |++|...++.+...|+ +|+.+.++.++.+
T Consensus 15 ~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r~~~~~~ 54 (306)
T PRK06197 15 SGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVRNLDKGK 54 (306)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence 5688999998 9999998888888899 8999988877654
No 189
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=93.27 E-value=0.54 Score=40.55 Aligned_cols=44 Identities=32% Similarity=0.468 Sum_probs=34.5
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS 237 (246)
Q Consensus 192 ~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~ 237 (246)
.+++++||-+|.|. |.+++.+++ .|+.+|+++|.++..++.+++
T Consensus 157 ~~~g~~VLDvGcGs-G~lai~aa~-~g~~~V~avDid~~al~~a~~ 200 (288)
T TIGR00406 157 DLKDKNVIDVGCGS-GILSIAALK-LGAAKVVGIDIDPLAVESARK 200 (288)
T ss_pred cCCCCEEEEeCCCh-hHHHHHHHH-cCCCeEEEEECCHHHHHHHHH
Confidence 45778999999876 777777665 566699999999987776654
No 190
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=93.13 E-value=0.34 Score=38.13 Aligned_cols=49 Identities=31% Similarity=0.388 Sum_probs=36.6
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS 241 (246)
Q Consensus 192 ~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~ 241 (246)
.-.|++++|.|=|.+|...++.++.+|+ +|++++..+-+.-.+.--|.+
T Consensus 20 ~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga-~V~V~e~DPi~alqA~~dGf~ 68 (162)
T PF00670_consen 20 MLAGKRVVVIGYGKVGKGIARALRGLGA-RVTVTEIDPIRALQAAMDGFE 68 (162)
T ss_dssp --TTSEEEEE--SHHHHHHHHHHHHTT--EEEEE-SSHHHHHHHHHTT-E
T ss_pred eeCCCEEEEeCCCcccHHHHHHHhhCCC-EEEEEECChHHHHHhhhcCcE
Confidence 4578999999999999999999999999 999999999877666554443
No 191
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=93.13 E-value=0.35 Score=38.94 Aligned_cols=42 Identities=29% Similarity=0.365 Sum_probs=34.8
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHh
Q 025895 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM 236 (246)
Q Consensus 194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~ 236 (246)
.+.+++|+|+ |.+|...+..+...|+ +|+.++++.++.+.+.
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~-~V~l~~R~~~~~~~l~ 69 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGA-RVVLVGRDLERAQKAA 69 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHH
Confidence 5678999997 9999988888888898 8999999988766543
No 192
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=93.09 E-value=0.23 Score=42.95 Aligned_cols=43 Identities=30% Similarity=0.301 Sum_probs=36.0
Q ss_pred CCCCEEEEECC-CHHHHH-HHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895 193 EPGSIVAVFGL-GTVGLA-VAEGAKAAGASRVIGIDIDPKKFDRGMS 237 (246)
Q Consensus 193 ~~~~~VlI~Ga-g~~G~~-ai~~a~~~G~~~vi~~~~~~~~~~~~~~ 237 (246)
+.|++.+|+|+ .++|.. |-++|+ .|+ +|+.++|+++|++.+++
T Consensus 47 ~~g~WAVVTGaTDGIGKayA~eLAk-rG~-nvvLIsRt~~KL~~v~k 91 (312)
T KOG1014|consen 47 KLGSWAVVTGATDGIGKAYARELAK-RGF-NVVLISRTQEKLEAVAK 91 (312)
T ss_pred hcCCEEEEECCCCcchHHHHHHHHH-cCC-EEEEEeCCHHHHHHHHH
Confidence 45689999999 789976 777777 999 89999999999986653
No 193
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=93.07 E-value=0.3 Score=41.31 Aligned_cols=40 Identities=30% Similarity=0.428 Sum_probs=33.7
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 025895 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234 (246)
Q Consensus 194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~ 234 (246)
.+++++|+|+ |++|...+..+...|+ +|+++++++++.+.
T Consensus 9 ~~k~vlVtGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~ 49 (278)
T PRK08277 9 KGKVAVITGGGGVLGGAMAKELARAGA-KVAILDRNQEKAEA 49 (278)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence 3578999988 8999999998889999 89999998766543
No 194
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=92.94 E-value=0.37 Score=35.09 Aligned_cols=43 Identities=30% Similarity=0.467 Sum_probs=37.1
Q ss_pred EEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895 198 VAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS 241 (246)
Q Consensus 198 VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~ 241 (246)
|+|.|.|.+|...++.++..+. +|++++.++++.+.+++.|..
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~-~vvvid~d~~~~~~~~~~~~~ 43 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGI-DVVVIDRDPERVEELREEGVE 43 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTS-EEEEEESSHHHHHHHHHTTSE
T ss_pred eEEEcCCHHHHHHHHHHHhCCC-EEEEEECCcHHHHHHHhcccc
Confidence 5788999999999999999776 899999999999999887754
No 195
>PLN02253 xanthoxin dehydrogenase
Probab=92.87 E-value=0.34 Score=41.07 Aligned_cols=39 Identities=21% Similarity=0.227 Sum_probs=32.7
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHH
Q 025895 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233 (246)
Q Consensus 194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~ 233 (246)
.++++||+|+ |.+|...++.+...|+ +|+++++++++.+
T Consensus 17 ~~k~~lItGas~gIG~~la~~l~~~G~-~v~~~~~~~~~~~ 56 (280)
T PLN02253 17 LGKVALVTGGATGIGESIVRLFHKHGA-KVCIVDLQDDLGQ 56 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHH
Confidence 3578999988 8999998888888899 8999988876554
No 196
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=92.76 E-value=0.28 Score=44.14 Aligned_cols=56 Identities=21% Similarity=0.297 Sum_probs=45.0
Q ss_pred hhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcC
Q 025895 182 GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCV 239 (246)
Q Consensus 182 a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg 239 (246)
.+..+.+..+++++++||-+|.| .|..+..+++..|+ +|++++.+++.++.+++..
T Consensus 155 k~~~l~~~l~l~~g~rVLDIGcG-~G~~a~~la~~~g~-~V~giDlS~~~l~~A~~~~ 210 (383)
T PRK11705 155 KLDLICRKLQLKPGMRVLDIGCG-WGGLARYAAEHYGV-SVVGVTISAEQQKLAQERC 210 (383)
T ss_pred HHHHHHHHhCCCCCCEEEEeCCC-ccHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh
Confidence 34445567788999999999874 56677888888898 9999999999998887644
No 197
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=92.67 E-value=0.34 Score=40.55 Aligned_cols=34 Identities=26% Similarity=0.255 Sum_probs=30.0
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID 228 (246)
Q Consensus 194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~ 228 (246)
.++++||+|+ |++|...++.+...|+ +|++++++
T Consensus 14 ~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~~~ 48 (258)
T PRK06935 14 DGKVAIVTGGNTGLGQGYAVALAKAGA-DIIITTHG 48 (258)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 4689999998 8999999999989999 88888777
No 198
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=92.58 E-value=0.51 Score=42.95 Aligned_cols=47 Identities=13% Similarity=0.109 Sum_probs=39.1
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHh-hcC
Q 025895 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM-SCV 239 (246)
Q Consensus 193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~-~lg 239 (246)
-.+.+++|+|+|.+|.+++..+...|+.+++++.++.+|.+.+. +++
T Consensus 179 l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~ 226 (414)
T PRK13940 179 ISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFR 226 (414)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhc
Confidence 45688999999999999999999999888999999988755444 344
No 199
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=92.45 E-value=0.29 Score=41.36 Aligned_cols=38 Identities=29% Similarity=0.419 Sum_probs=33.6
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 025895 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 230 (246)
Q Consensus 192 ~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~ 230 (246)
..+..+++|+|+|.++...+++|+.+|+ +|+++|..++
T Consensus 97 ~~p~~~L~IfGaG~va~~la~la~~lGf-~V~v~D~R~~ 134 (246)
T TIGR02964 97 APPAPHVVLFGAGHVGRALVRALAPLPC-RVTWVDSREA 134 (246)
T ss_pred cCCCCEEEEECCcHHHHHHHHHHhcCCC-EEEEEeCCcc
Confidence 4566799999999999999999999999 8999876655
No 200
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=92.38 E-value=0.43 Score=40.11 Aligned_cols=41 Identities=32% Similarity=0.503 Sum_probs=33.8
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG 235 (246)
Q Consensus 194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~ 235 (246)
.++++||+|+ +.+|...+..+...|+ +|+.+++++++++.+
T Consensus 9 ~~k~~lItGa~~~iG~~ia~~l~~~G~-~vv~~~~~~~~~~~~ 50 (265)
T PRK07097 9 KGKIALITGASYGIGFAIAKAYAKAGA-TIVFNDINQELVDKG 50 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHH
Confidence 4578999988 8999988888888899 899999988776543
No 201
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=92.33 E-value=0.37 Score=32.84 Aligned_cols=33 Identities=30% Similarity=0.424 Sum_probs=29.4
Q ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 025895 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 230 (246)
Q Consensus 197 ~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~ 230 (246)
+|+|+|+|.+|+-.+..++.+|. +|..+.+++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~-~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGK-EVTLIERSDR 33 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS-EEEEEESSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCc-EEEEEeccch
Confidence 58899999999999999999998 8888888774
No 202
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=92.28 E-value=0.5 Score=39.30 Aligned_cols=36 Identities=28% Similarity=0.394 Sum_probs=32.1
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCC--eEEEEcCC
Q 025895 193 EPGSIVAVFGLGTVGLAVAEGAKAAGAS--RVIGIDID 228 (246)
Q Consensus 193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~--~vi~~~~~ 228 (246)
-.+.+++|+|+|..|..++..+...|+. +++.++++
T Consensus 23 l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 23 IEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 3457999999999999999988899997 89999998
No 203
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=92.24 E-value=0.14 Score=39.17 Aligned_cols=34 Identities=38% Similarity=0.584 Sum_probs=27.6
Q ss_pred EEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHH
Q 025895 198 VAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKF 232 (246)
Q Consensus 198 VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~ 232 (246)
++|+|+|.++...+++++.+|+ +|++++..+++.
T Consensus 1 L~I~GaG~va~al~~la~~lg~-~v~v~d~r~e~~ 34 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGF-RVTVVDPRPERF 34 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTE-EEEEEES-CCC-
T ss_pred CEEEeCcHHHHHHHHHHHhCCC-EEEEEcCCcccc
Confidence 5788999999999999999999 888888877643
No 204
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.23 E-value=0.45 Score=43.97 Aligned_cols=47 Identities=30% Similarity=0.267 Sum_probs=36.9
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChh-----HHHHHhhcCCC
Q 025895 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK-----KFDRGMSCVSS 241 (246)
Q Consensus 194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~-----~~~~~~~lg~~ 241 (246)
.+++|+|+|+|.+|+.++.+++..|+ +|++++.++. ..+.+++.|..
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~-~V~~~d~~~~~~~~~~~~~l~~~gv~ 66 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGA-RVTVVDDGDDERHRALAAILEALGAT 66 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhhHHHHHHHHHcCCE
Confidence 45789999999999999999999999 8999986652 23445666654
No 205
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=92.19 E-value=0.4 Score=40.31 Aligned_cols=37 Identities=22% Similarity=0.309 Sum_probs=30.4
Q ss_pred CCCEEEEECCC---HHHHHHHHHHHHcCCCeEEEEcCChhH
Q 025895 194 PGSIVAVFGLG---TVGLAVAEGAKAAGASRVIGIDIDPKK 231 (246)
Q Consensus 194 ~~~~VlI~Gag---~~G~~ai~~a~~~G~~~vi~~~~~~~~ 231 (246)
.++++||+|++ ++|.+.++.+...|+ +|+.++++++.
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~-~v~l~~r~~~~ 48 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGA-ELAVTYLNDKA 48 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCChhh
Confidence 46789999873 899998888888999 88888887643
No 206
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=92.11 E-value=0.5 Score=39.42 Aligned_cols=40 Identities=25% Similarity=0.347 Sum_probs=33.5
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 025895 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234 (246)
Q Consensus 194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~ 234 (246)
.++++||+|+ +++|...+..+...|+ +++.+++++++.+.
T Consensus 10 ~~k~vlVtG~s~gIG~~la~~l~~~G~-~vv~~~r~~~~~~~ 50 (255)
T PRK06113 10 DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANH 50 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHH
Confidence 4689999988 8999999988888999 88888888776543
No 207
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=92.02 E-value=0.43 Score=44.85 Aligned_cols=42 Identities=33% Similarity=0.434 Sum_probs=36.3
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHh
Q 025895 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM 236 (246)
Q Consensus 194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~ 236 (246)
.+++++|+|+|++|.+++..+...|+ +|+++.++.+|.+.+.
T Consensus 378 ~~k~vlIlGaGGagrAia~~L~~~G~-~V~i~nR~~e~a~~la 419 (529)
T PLN02520 378 AGKLFVVIGAGGAGKALAYGAKEKGA-RVVIANRTYERAKELA 419 (529)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHH
Confidence 35789999999999999999999999 9999999888766553
No 208
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=91.92 E-value=0.37 Score=41.35 Aligned_cols=49 Identities=22% Similarity=0.322 Sum_probs=34.7
Q ss_pred hhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHh
Q 025895 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM 236 (246)
Q Consensus 186 l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~ 236 (246)
+.+..++++|++||-+|.| -|..++.+++..|+ +|++++.|++..+.++
T Consensus 54 ~~~~~~l~~G~~vLDiGcG-wG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~ 102 (273)
T PF02353_consen 54 LCEKLGLKPGDRVLDIGCG-WGGLAIYAAERYGC-HVTGITLSEEQAEYAR 102 (273)
T ss_dssp HHTTTT--TT-EEEEES-T-TSHHHHHHHHHH---EEEEEES-HHHHHHHH
T ss_pred HHHHhCCCCCCEEEEeCCC-ccHHHHHHHHHcCc-EEEEEECCHHHHHHHH
Confidence 5678899999999999886 45667778888899 9999999999877664
No 209
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=91.81 E-value=0.56 Score=37.95 Aligned_cols=48 Identities=23% Similarity=0.407 Sum_probs=39.4
Q ss_pred hhCCCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCChhHHHHHh
Q 025895 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRGM 236 (246)
Q Consensus 188 ~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~-~~vi~~~~~~~~~~~~~ 236 (246)
....+.++++|+-+|+|. |..++.+++..+. .+|++++.+++..+.++
T Consensus 34 ~~l~~~~~~~vlDlG~Gt-G~~s~~~a~~~~~~~~v~avD~~~~~~~~a~ 82 (198)
T PRK00377 34 SKLRLRKGDMILDIGCGT-GSVTVEASLLVGETGKVYAVDKDEKAINLTR 82 (198)
T ss_pred HHcCCCCcCEEEEeCCcC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHH
Confidence 456788999999999977 8888888887642 48999999998887654
No 210
>PRK06484 short chain dehydrogenase; Validated
Probab=91.68 E-value=0.52 Score=43.85 Aligned_cols=44 Identities=34% Similarity=0.381 Sum_probs=37.4
Q ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895 193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS 237 (246)
Q Consensus 193 ~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~ 237 (246)
..++++||+|+ +++|...++.+...|+ +|+.+++++++++.+.+
T Consensus 267 ~~~k~~lItGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~ 311 (520)
T PRK06484 267 ESPRVVAITGGARGIGRAVADRFAAAGD-RLLIIDRDAEGAKKLAE 311 (520)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence 45788999988 8999999998888999 99999999888776553
No 211
>PRK06720 hypothetical protein; Provisional
Probab=91.61 E-value=0.71 Score=36.52 Aligned_cols=39 Identities=31% Similarity=0.282 Sum_probs=32.5
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHH
Q 025895 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233 (246)
Q Consensus 194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~ 233 (246)
.+++++|+|+ +++|...+..+...|+ +|+++++++++.+
T Consensus 15 ~gk~~lVTGa~~GIG~aia~~l~~~G~-~V~l~~r~~~~~~ 54 (169)
T PRK06720 15 AGKVAIVTGGGIGIGRNTALLLAKQGA-KVIVTDIDQESGQ 54 (169)
T ss_pred CCCEEEEecCCChHHHHHHHHHHHCCC-EEEEEECCHHHHH
Confidence 4678999988 7899998888888898 8999998877654
No 212
>PRK07775 short chain dehydrogenase; Provisional
Probab=91.60 E-value=0.61 Score=39.51 Aligned_cols=39 Identities=26% Similarity=0.103 Sum_probs=32.5
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHH
Q 025895 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233 (246)
Q Consensus 194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~ 233 (246)
+.++++|+|+ |.+|...++.+...|+ +|+++.++.++.+
T Consensus 9 ~~~~vlVtGa~g~iG~~la~~L~~~G~-~V~~~~r~~~~~~ 48 (274)
T PRK07775 9 DRRPALVAGASSGIGAATAIELAAAGF-PVALGARRVEKCE 48 (274)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence 3468999998 9999999988888999 8888888776654
No 213
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=91.49 E-value=0.6 Score=39.02 Aligned_cols=39 Identities=28% Similarity=0.182 Sum_probs=32.8
Q ss_pred CCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 025895 195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234 (246)
Q Consensus 195 ~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~ 234 (246)
..+|||+|+ |.+|...+..+...|+ +|+++.+++++...
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~ 56 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAKGF-AVKAGVRDVDKAKT 56 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCC-EEEEEecCHHHHHH
Confidence 578999998 9999999988888898 89988888776543
No 214
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=91.35 E-value=0.43 Score=42.13 Aligned_cols=47 Identities=21% Similarity=0.260 Sum_probs=36.4
Q ss_pred hhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895 181 TGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP 229 (246)
Q Consensus 181 ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~ 229 (246)
|+|.-+.....++. .+|||+|+ |.+|...+..+...|. +|+++++..
T Consensus 2 ~~~~~~~~~~~~~~-~~vlVtGatGfiG~~lv~~L~~~g~-~V~~~d~~~ 49 (348)
T PRK15181 2 TAYEELRTKLVLAP-KRWLITGVAGFIGSGLLEELLFLNQ-TVIGLDNFS 49 (348)
T ss_pred chhhhhhhcccccC-CEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence 56665544444444 68999998 9999999999999998 899998754
No 215
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=91.18 E-value=0.71 Score=33.12 Aligned_cols=42 Identities=38% Similarity=0.600 Sum_probs=33.0
Q ss_pred CCCEEEEECCCHHHHHHHHHHH-HcCCCeEEEEcCChhHHHHHhh
Q 025895 194 PGSIVAVFGLGTVGLAVAEGAK-AAGASRVIGIDIDPKKFDRGMS 237 (246)
Q Consensus 194 ~~~~VlI~Gag~~G~~ai~~a~-~~G~~~vi~~~~~~~~~~~~~~ 237 (246)
|+++||-+|.|. |..++.+++ ..++ +|++++.+++-++.+++
T Consensus 1 p~~~vLDlGcG~-G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~ 43 (112)
T PF12847_consen 1 PGGRVLDLGCGT-GRLSIALARLFPGA-RVVGVDISPEMLEIARE 43 (112)
T ss_dssp TTCEEEEETTTT-SHHHHHHHHHHTTS-EEEEEESSHHHHHHHHH
T ss_pred CCCEEEEEcCcC-CHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHH
Confidence 578898888753 666667777 4677 89999999998887765
No 216
>PLN00203 glutamyl-tRNA reductase
Probab=91.03 E-value=0.55 Score=44.04 Aligned_cols=43 Identities=14% Similarity=0.273 Sum_probs=37.9
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS 237 (246)
Q Consensus 195 ~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~ 237 (246)
+.+|+|+|+|.+|.+++..+...|+.+|+++.++.++.+.+.+
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~ 308 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALRE 308 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Confidence 6889999999999999999999998789999999988766553
No 217
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=91.01 E-value=0.51 Score=40.62 Aligned_cols=41 Identities=22% Similarity=0.403 Sum_probs=32.0
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG 235 (246)
Q Consensus 194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~ 235 (246)
.++.|+|+|| +++|...+.-.-..|+ .++.+.+..++++.+
T Consensus 11 ~~kvVvITGASsGIG~~lA~~la~~G~-~l~lvar~~rrl~~v 52 (282)
T KOG1205|consen 11 AGKVVLITGASSGIGEALAYELAKRGA-KLVLVARRARRLERV 52 (282)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCC-ceEEeehhhhhHHHH
Confidence 4578999999 8999887777777888 677777777776655
No 218
>PLN02686 cinnamoyl-CoA reductase
Probab=90.92 E-value=0.68 Score=41.29 Aligned_cols=43 Identities=19% Similarity=0.109 Sum_probs=34.2
Q ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHh
Q 025895 193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM 236 (246)
Q Consensus 193 ~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~ 236 (246)
..+++|||+|+ |.+|...+..+...|+ +|+++.++.++.+.++
T Consensus 51 ~~~k~VLVTGatGfIG~~lv~~L~~~G~-~V~~~~r~~~~~~~l~ 94 (367)
T PLN02686 51 AEARLVCVTGGVSFLGLAIVDRLLRHGY-SVRIAVDTQEDKEKLR 94 (367)
T ss_pred CCCCEEEEECCchHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence 44679999988 9999999999999999 8888777766554433
No 219
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=90.90 E-value=0.67 Score=42.08 Aligned_cols=39 Identities=33% Similarity=0.541 Sum_probs=33.3
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHH
Q 025895 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233 (246)
Q Consensus 194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~ 233 (246)
.+++++|+|+ |++|...+..+...|+ +|+++++++++++
T Consensus 177 ~gK~VLITGASgGIG~aLA~~La~~G~-~Vi~l~r~~~~l~ 216 (406)
T PRK07424 177 KGKTVAVTGASGTLGQALLKELHQQGA-KVVALTSNSDKIT 216 (406)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence 3679999998 9999999888888999 8999988877654
No 220
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=90.82 E-value=0.54 Score=44.48 Aligned_cols=45 Identities=22% Similarity=0.241 Sum_probs=40.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS 241 (246)
Q Consensus 196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~ 241 (246)
++++|.|.|.+|...++.++..|. +++++|.++++.+.+++.|..
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~-~vvvId~d~~~~~~~~~~g~~ 462 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGI-PLVVIETSRTRVDELRERGIR 462 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHCCCe
Confidence 678999999999999999999998 899999999999999887654
No 221
>PRK12367 short chain dehydrogenase; Provisional
Probab=90.67 E-value=0.67 Score=38.85 Aligned_cols=34 Identities=32% Similarity=0.616 Sum_probs=30.0
Q ss_pred CCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895 195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP 229 (246)
Q Consensus 195 ~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~ 229 (246)
++++||+|+ |++|...++.+...|+ +|+++++++
T Consensus 14 ~k~~lITGas~gIG~ala~~l~~~G~-~Vi~~~r~~ 48 (245)
T PRK12367 14 GKRIGITGASGALGKALTKAFRAKGA-KVIGLTHSK 48 (245)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEECCc
Confidence 578999998 8999999998889999 899888876
No 222
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=90.60 E-value=1.1 Score=31.40 Aligned_cols=43 Identities=28% Similarity=0.352 Sum_probs=34.3
Q ss_pred EEEEECCCHHHHHHHHHHHHcC---CCeEE-EEcCChhHHHHHh-hcCC
Q 025895 197 IVAVFGLGTVGLAVAEGAKAAG---ASRVI-GIDIDPKKFDRGM-SCVS 240 (246)
Q Consensus 197 ~VlI~Gag~~G~~ai~~a~~~G---~~~vi-~~~~~~~~~~~~~-~lg~ 240 (246)
+|.|+|.|.+|.+.+.-....| . +|+ ++++++++.+.++ +++.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~-~v~~~~~r~~~~~~~~~~~~~~ 48 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPH-EVIIVSSRSPEKAAELAKEYGV 48 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GG-EEEEEEESSHHHHHHHHHHCTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCce-eEEeeccCcHHHHHHHHHhhcc
Confidence 4778899999999999888888 6 777 5499999887764 4553
No 223
>PRK06523 short chain dehydrogenase; Provisional
Probab=90.55 E-value=0.56 Score=39.16 Aligned_cols=36 Identities=28% Similarity=0.267 Sum_probs=30.5
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChh
Q 025895 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK 230 (246)
Q Consensus 194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~ 230 (246)
+++++||+|+ |++|...++.+...|+ +|++++++++
T Consensus 8 ~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~r~~~ 44 (260)
T PRK06523 8 AGKRALVTGGTKGIGAATVARLLEAGA-RVVTTARSRP 44 (260)
T ss_pred CCCEEEEECCCCchhHHHHHHHHHCCC-EEEEEeCChh
Confidence 4689999998 8999999988888999 8888887653
No 224
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=90.39 E-value=0.63 Score=44.67 Aligned_cols=47 Identities=19% Similarity=0.253 Sum_probs=42.3
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS 242 (246)
Q Consensus 195 ~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~ 242 (246)
.++|+|.|.|.+|+..++.++..|. +++++|.++++.+.+++.|...
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~g~~v 446 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPDHIETLRKFGMKV 446 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhcCCeE
Confidence 3679999999999999999999999 8999999999999998877653
No 225
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=90.37 E-value=0.99 Score=37.33 Aligned_cols=36 Identities=36% Similarity=0.432 Sum_probs=30.7
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (246)
Q Consensus 194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~ 229 (246)
.+.+|+|.|-|.+|..+++.+...|+..|.+.|.+.
T Consensus 22 ~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g 57 (217)
T cd05211 22 EGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG 57 (217)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 578999999999999999999999995555566666
No 226
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=90.35 E-value=0.66 Score=44.78 Aligned_cols=36 Identities=31% Similarity=0.385 Sum_probs=31.8
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (246)
Q Consensus 193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~ 229 (246)
..+++|+|+|+|+.|+.++..+...|. +|++++.++
T Consensus 191 ~~~k~VaIIGaGpAGl~aA~~La~~G~-~Vtv~e~~~ 226 (652)
T PRK12814 191 KSGKKVAIIGAGPAGLTAAYYLLRKGH-DVTIFDANE 226 (652)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Confidence 457899999999999999999999999 888887764
No 227
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=90.32 E-value=0.88 Score=40.11 Aligned_cols=40 Identities=23% Similarity=0.133 Sum_probs=32.9
Q ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHH
Q 025895 193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233 (246)
Q Consensus 193 ~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~ 233 (246)
..+.+|||+|+ |.+|...++.+...|+ +|++++++.++.+
T Consensus 8 ~~~~~vLVtG~~GfIG~~l~~~L~~~G~-~V~~~~r~~~~~~ 48 (353)
T PLN02896 8 SATGTYCVTGATGYIGSWLVKLLLQRGY-TVHATLRDPAKSL 48 (353)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCChHHHH
Confidence 34568999987 9999999999988999 8998888765543
No 228
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=90.27 E-value=1.2 Score=32.34 Aligned_cols=48 Identities=23% Similarity=0.401 Sum_probs=37.4
Q ss_pred hhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHh
Q 025895 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM 236 (246)
Q Consensus 188 ~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~ 236 (246)
....+.++++|+-+|.|. |..+..+++..+..+++++|.++...+.++
T Consensus 13 ~~~~~~~~~~vldlG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~ 60 (124)
T TIGR02469 13 SKLRLRPGDVLWDIGAGS-GSITIEAARLVPNGRVYAIERNPEALRLIE 60 (124)
T ss_pred HHcCCCCCCEEEEeCCCC-CHHHHHHHHHCCCceEEEEcCCHHHHHHHH
Confidence 445566778888888866 888888888875458999999998877654
No 229
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=90.23 E-value=0.59 Score=31.03 Aligned_cols=30 Identities=33% Similarity=0.424 Sum_probs=25.8
Q ss_pred EECCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 025895 200 VFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 230 (246)
Q Consensus 200 I~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~ 230 (246)
|+|+|..|+.++..++..|. +|.+++.++.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~-~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGY-RVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTS-EEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHCCC-cEEEEecCcc
Confidence 67999999999999999999 9999987764
No 230
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=89.83 E-value=0.71 Score=44.14 Aligned_cols=45 Identities=16% Similarity=0.150 Sum_probs=41.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS 241 (246)
Q Consensus 196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~ 241 (246)
+.|+|.|.|.+|+..++.++..|. +++++|.++++.+.+++.|..
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~g~~ 445 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKM-RITVLERDISAVNLMRKYGYK 445 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhCCCe
Confidence 578999999999999999999999 899999999999999888765
No 231
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=89.57 E-value=1 Score=38.31 Aligned_cols=35 Identities=20% Similarity=0.306 Sum_probs=29.1
Q ss_pred CCCEEEEECC---CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895 194 PGSIVAVFGL---GTVGLAVAEGAKAAGASRVIGIDIDP 229 (246)
Q Consensus 194 ~~~~VlI~Ga---g~~G~~ai~~a~~~G~~~vi~~~~~~ 229 (246)
.++++||+|+ +++|...+..+...|+ +|+.+.+++
T Consensus 9 ~~k~~lItGas~~~GIG~aia~~la~~G~-~V~l~~r~~ 46 (272)
T PRK08159 9 AGKRGLILGVANNRSIAWGIAKACRAAGA-ELAFTYQGD 46 (272)
T ss_pred cCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCch
Confidence 4678999987 5899998888888999 888887764
No 232
>PRK07574 formate dehydrogenase; Provisional
Probab=89.54 E-value=0.89 Score=41.01 Aligned_cols=39 Identities=26% Similarity=0.313 Sum_probs=33.8
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHH
Q 025895 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233 (246)
Q Consensus 194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~ 233 (246)
.|.+|.|+|.|.+|...++.++..|+ +|++++++....+
T Consensus 191 ~gktVGIvG~G~IG~~vA~~l~~fG~-~V~~~dr~~~~~~ 229 (385)
T PRK07574 191 EGMTVGIVGAGRIGLAVLRRLKPFDV-KLHYTDRHRLPEE 229 (385)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCCCCchh
Confidence 56789999999999999999999999 9999998764333
No 233
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=89.50 E-value=1.3 Score=34.86 Aligned_cols=48 Identities=21% Similarity=0.380 Sum_probs=33.5
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS 241 (246)
Q Consensus 194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~ 241 (246)
.+++|.|+|-|.-|.+..+-+|..|.+-+|+........+.+++-|+.
T Consensus 3 ~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~ 50 (165)
T PF07991_consen 3 KGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFE 50 (165)
T ss_dssp CTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-E
T ss_pred CCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCe
Confidence 468999999999999999999999992222332222378888888876
No 234
>PRK14982 acyl-ACP reductase; Provisional
Probab=89.47 E-value=1.1 Score=39.68 Aligned_cols=44 Identities=20% Similarity=0.300 Sum_probs=35.0
Q ss_pred CCCCEEEEECC-CHHHHHHHHHHH-HcCCCeEEEEcCChhHHHHHh
Q 025895 193 EPGSIVAVFGL-GTVGLAVAEGAK-AAGASRVIGIDIDPKKFDRGM 236 (246)
Q Consensus 193 ~~~~~VlI~Ga-g~~G~~ai~~a~-~~G~~~vi~~~~~~~~~~~~~ 236 (246)
-.+++|+|+|+ |.+|...++.+. ..|..+++.+.++++++..+.
T Consensus 153 l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La 198 (340)
T PRK14982 153 LSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQ 198 (340)
T ss_pred cCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHH
Confidence 35689999999 899988877775 457678999999988776544
No 235
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.43 E-value=1.2 Score=41.35 Aligned_cols=47 Identities=21% Similarity=0.128 Sum_probs=37.0
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHH-HhhcCC
Q 025895 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR-GMSCVS 240 (246)
Q Consensus 193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~-~~~lg~ 240 (246)
-.+++|+|+|.|..|.+++.+++..|+ .|.+.|++..+... +.++|.
T Consensus 13 ~~~~~v~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~~~~~~~~l~~~gi 60 (473)
T PRK00141 13 ELSGRVLVAGAGVSGRGIAAMLSELGC-DVVVADDNETARHKLIEVTGV 60 (473)
T ss_pred ccCCeEEEEccCHHHHHHHHHHHHCCC-EEEEECCChHHHHHHHHhcCc
Confidence 345679999999999999999999999 99999987655432 344554
No 236
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=89.41 E-value=1 Score=39.53 Aligned_cols=47 Identities=28% Similarity=0.278 Sum_probs=37.7
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCC
Q 025895 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVS 240 (246)
Q Consensus 193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~ 240 (246)
-.+++|.|+|-|.+|...++.++..|+ +|++.++.....+.+...|+
T Consensus 14 LkgKtVGIIG~GsIG~amA~nL~d~G~-~ViV~~r~~~s~~~A~~~G~ 60 (335)
T PRK13403 14 LQGKTVAVIGYGSQGHAQAQNLRDSGV-EVVVGVRPGKSFEVAKADGF 60 (335)
T ss_pred hCcCEEEEEeEcHHHHHHHHHHHHCcC-EEEEEECcchhhHHHHHcCC
Confidence 356899999999999999999999999 88887666555555555554
No 237
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=89.22 E-value=1.1 Score=39.18 Aligned_cols=42 Identities=19% Similarity=0.265 Sum_probs=35.2
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHh
Q 025895 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM 236 (246)
Q Consensus 194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~ 236 (246)
.+.+++|+|+ +++|...+..+-..|+ +||...++.++.+.++
T Consensus 34 ~~~~~vVTGansGIG~eta~~La~~Ga-~Vv~~~R~~~~~~~~~ 76 (314)
T KOG1208|consen 34 SGKVALVTGATSGIGFETARELALRGA-HVVLACRNEERGEEAK 76 (314)
T ss_pred CCcEEEEECCCCchHHHHHHHHHhCCC-EEEEEeCCHHHHHHHH
Confidence 4478899998 8999999999999998 9999999987665543
No 238
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=89.18 E-value=0.63 Score=39.01 Aligned_cols=37 Identities=35% Similarity=0.508 Sum_probs=30.6
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 025895 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK 231 (246)
Q Consensus 194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~ 231 (246)
.++++||+|+ |++|...++.+...|+ +|+.+++++++
T Consensus 8 ~~k~vlItG~s~gIG~~la~~l~~~G~-~v~~~~~~~~~ 45 (266)
T PRK06171 8 QGKIIIVTGGSSGIGLAIVKELLANGA-NVVNADIHGGD 45 (266)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCccc
Confidence 3578999988 9999999998888999 88888776543
No 239
>PLN03139 formate dehydrogenase; Provisional
Probab=89.17 E-value=0.9 Score=40.96 Aligned_cols=45 Identities=16% Similarity=0.123 Sum_probs=36.6
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcC
Q 025895 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCV 239 (246)
Q Consensus 194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg 239 (246)
.|++|.|+|.|.+|...++.++.+|+ +|++++++..+.+...++|
T Consensus 198 ~gktVGIVG~G~IG~~vA~~L~afG~-~V~~~d~~~~~~~~~~~~g 242 (386)
T PLN03139 198 EGKTVGTVGAGRIGRLLLQRLKPFNC-NLLYHDRLKMDPELEKETG 242 (386)
T ss_pred CCCEEEEEeecHHHHHHHHHHHHCCC-EEEEECCCCcchhhHhhcC
Confidence 57899999999999999999999999 8999998754444444444
No 240
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=89.16 E-value=0.48 Score=34.19 Aligned_cols=35 Identities=34% Similarity=0.282 Sum_probs=30.4
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (246)
Q Consensus 194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~ 229 (246)
.+.+|||+|+|.+|..-++.+...|+ +|++++...
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA-~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGA-KVTVISPEI 40 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTB-EEEEEESSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCch
Confidence 45789999999999999999999999 898887774
No 241
>PLN02778 3,5-epimerase/4-reductase
Probab=89.14 E-value=1.2 Score=38.49 Aligned_cols=51 Identities=8% Similarity=-0.011 Sum_probs=35.0
Q ss_pred CCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHH----HHHhhcCCCccccC
Q 025895 195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKF----DRGMSCVSSSKYHL 246 (246)
Q Consensus 195 ~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~----~~~~~lg~~~~~~~ 246 (246)
..+|||+|+ |.+|...++.+...|. +|+.....-... ..+++.++|..+|+
T Consensus 9 ~~kiLVtG~tGfiG~~l~~~L~~~g~-~V~~~~~~~~~~~~v~~~l~~~~~D~ViH~ 64 (298)
T PLN02778 9 TLKFLIYGKTGWIGGLLGKLCQEQGI-DFHYGSGRLENRASLEADIDAVKPTHVFNA 64 (298)
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCC-EEEEecCccCCHHHHHHHHHhcCCCEEEEC
Confidence 357999988 9999999999999998 776543322222 23345567766653
No 242
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=89.14 E-value=1 Score=35.23 Aligned_cols=32 Identities=28% Similarity=0.425 Sum_probs=27.5
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEc
Q 025895 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID 226 (246)
Q Consensus 194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~ 226 (246)
.+.+|||+|+|.+|.--++.+...|+ .|++++
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga-~V~VIs 43 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGA-FVTVVS 43 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEc
Confidence 45889999999999998888888999 787774
No 243
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=88.99 E-value=1.7 Score=37.65 Aligned_cols=56 Identities=20% Similarity=0.184 Sum_probs=43.6
Q ss_pred hhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEE--cCChhHHHHHhhcCCCcc
Q 025895 187 WNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGI--DIDPKKFDRGMSCVSSSK 243 (246)
Q Consensus 187 ~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~--~~~~~~~~~~~~lg~~~~ 243 (246)
.....+++|. .+|-+. |.+|+..+.+|+.+|++-++++ ..+.+|+++++.+||.+.
T Consensus 54 e~~G~l~pG~-tIVE~TSGNTGI~LA~vaa~~Gy~~iivmP~~~S~er~~~l~a~GAevi 112 (300)
T COG0031 54 EKRGLLKPGG-TIVEATSGNTGIALAMVAAAKGYRLIIVMPETMSQERRKLLRALGAEVI 112 (300)
T ss_pred HHcCCCCCCC-EEEEcCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEE
Confidence 4556789988 455665 9999999999999999545555 346789999999999854
No 244
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=88.89 E-value=1.1 Score=43.41 Aligned_cols=41 Identities=24% Similarity=0.283 Sum_probs=34.7
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG 235 (246)
Q Consensus 194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~ 235 (246)
.++++||+|+ |++|...++.+...|+ +|++++++.++.+.+
T Consensus 413 ~gkvvLVTGasggIG~aiA~~La~~Ga-~Vvi~~r~~~~~~~~ 454 (676)
T TIGR02632 413 ARRVAFVTGGAGGIGRETARRLAAEGA-HVVLADLNLEAAEAV 454 (676)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHH
Confidence 4688999988 9999999988888999 999999988766543
No 245
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=88.84 E-value=1.8 Score=40.28 Aligned_cols=42 Identities=21% Similarity=0.219 Sum_probs=36.1
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHh
Q 025895 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM 236 (246)
Q Consensus 194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~ 236 (246)
.+.+++|+|+|++|.+++..+...|+ +++++++++++.+.+.
T Consensus 331 ~~k~vlIiGaGgiG~aia~~L~~~G~-~V~i~~R~~~~~~~la 372 (477)
T PRK09310 331 NNQHVAIVGAGGAAKAIATTLARAGA-ELLIFNRTKAHAEALA 372 (477)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence 46789999999999999999999999 8999999988766543
No 246
>PRK07201 short chain dehydrogenase; Provisional
Probab=88.71 E-value=1.2 Score=42.73 Aligned_cols=40 Identities=28% Similarity=0.347 Sum_probs=34.2
Q ss_pred CCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895 195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG 235 (246)
Q Consensus 195 ~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~ 235 (246)
++++||+|+ |++|...+..+...|+ +|+++++++++++.+
T Consensus 371 ~k~vlItGas~giG~~la~~l~~~G~-~V~~~~r~~~~~~~~ 411 (657)
T PRK07201 371 GKVVLITGASSGIGRATAIKVAEAGA-TVFLVARNGEALDEL 411 (657)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence 578999998 8999998888888899 899999998876543
No 247
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=88.65 E-value=0.71 Score=42.66 Aligned_cols=34 Identities=29% Similarity=0.464 Sum_probs=30.7
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (246)
Q Consensus 195 ~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~ 229 (246)
..+|+|+|+|+.|++++..++..|. +++++++++
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G~-~v~vfE~~~ 43 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREGH-TVVVFEREK 43 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcCC-eEEEEecCC
Confidence 4679999999999999999999999 899998765
No 248
>PRK13984 putative oxidoreductase; Provisional
Probab=88.65 E-value=1.3 Score=42.21 Aligned_cols=37 Identities=24% Similarity=0.208 Sum_probs=32.3
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (246)
Q Consensus 192 ~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~ 229 (246)
.+.+++|+|+|+|+.|+.++..++..|. +|++++..+
T Consensus 280 ~~~~~~v~IIGaG~aGl~aA~~L~~~G~-~v~vie~~~ 316 (604)
T PRK13984 280 EKKNKKVAIVGSGPAGLSAAYFLATMGY-EVTVYESLS 316 (604)
T ss_pred ccCCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEecCC
Confidence 4678899999999999999999999999 888886654
No 249
>PLN02928 oxidoreductase family protein
Probab=88.58 E-value=0.95 Score=40.22 Aligned_cols=35 Identities=20% Similarity=0.433 Sum_probs=32.1
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (246)
Q Consensus 194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~ 229 (246)
.|++|.|+|.|.+|...++.++.+|+ +|++++++.
T Consensus 158 ~gktvGIiG~G~IG~~vA~~l~afG~-~V~~~dr~~ 192 (347)
T PLN02928 158 FGKTVFILGYGAIGIELAKRLRPFGV-KLLATRRSW 192 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECCCC
Confidence 57899999999999999999999999 999998863
No 250
>PRK05855 short chain dehydrogenase; Validated
Probab=88.52 E-value=1.3 Score=41.45 Aligned_cols=41 Identities=32% Similarity=0.443 Sum_probs=34.5
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG 235 (246)
Q Consensus 194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~ 235 (246)
.+.++||+|+ |++|...++.+...|+ +|+.+++++++++.+
T Consensus 314 ~~~~~lv~G~s~giG~~~a~~l~~~G~-~v~~~~r~~~~~~~~ 355 (582)
T PRK05855 314 SGKLVVVTGAGSGIGRETALAFAREGA-EVVASDIDEAAAERT 355 (582)
T ss_pred CCCEEEEECCcCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 4568999988 9999998888888999 899999998776643
No 251
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=88.45 E-value=2 Score=39.48 Aligned_cols=35 Identities=34% Similarity=0.352 Sum_probs=30.3
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEE-EEcCC
Q 025895 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVI-GIDID 228 (246)
Q Consensus 193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi-~~~~~ 228 (246)
-.|.+|+|.|.|.+|..+++.+..+|+ +|+ +.|.+
T Consensus 235 l~Gk~VaVqG~GnVg~~aa~~L~e~Ga-kVVavSD~~ 270 (454)
T PTZ00079 235 LEGKTVVVSGSGNVAQYAVEKLLQLGA-KVLTMSDSD 270 (454)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEEcCC
Confidence 467899999999999999999999999 888 44444
No 252
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=88.44 E-value=1.3 Score=41.12 Aligned_cols=35 Identities=37% Similarity=0.509 Sum_probs=30.5
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (246)
Q Consensus 193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~ 228 (246)
..+++|+|+|+|+.|+.++..++..|+ +|++++..
T Consensus 141 ~~~~~V~IIGaG~aGl~aA~~L~~~g~-~V~v~e~~ 175 (485)
T TIGR01317 141 RTGKKVAVVGSGPAGLAAADQLNRAGH-TVTVFERE 175 (485)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEecC
Confidence 456899999999999999999999999 78888654
No 253
>PLN02730 enoyl-[acyl-carrier-protein] reductase
Probab=88.43 E-value=1 Score=39.20 Aligned_cols=37 Identities=24% Similarity=0.297 Sum_probs=29.9
Q ss_pred CCCEEEEECC---CHHHHHHHHHHHHcCCCeEEEEcCChhHH
Q 025895 194 PGSIVAVFGL---GTVGLAVAEGAKAAGASRVIGIDIDPKKF 232 (246)
Q Consensus 194 ~~~~VlI~Ga---g~~G~~ai~~a~~~G~~~vi~~~~~~~~~ 232 (246)
.++++||+|+ .++|.+.++.+...|+ +|+. .+..+++
T Consensus 8 ~gk~alITGa~~s~GIG~a~A~~la~~Ga-~Vv~-~~~~~~l 47 (303)
T PLN02730 8 RGKRAFIAGVADDNGYGWAIAKALAAAGA-EILV-GTWVPAL 47 (303)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHHCCC-EEEE-EeCcchh
Confidence 4789999988 7899999999999999 7877 4454443
No 254
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=88.14 E-value=0.77 Score=42.87 Aligned_cols=36 Identities=25% Similarity=0.327 Sum_probs=31.1
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (246)
Q Consensus 193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~ 229 (246)
.+..+|+|+|||..|++|+.-++..|+ .|++....+
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~-~V~VLEARd 48 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGF-DVLVLEARD 48 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCC-ceEEEeccC
Confidence 344689999999999999999999999 798886655
No 255
>PRK07985 oxidoreductase; Provisional
Probab=88.09 E-value=1.4 Score=37.85 Aligned_cols=34 Identities=24% Similarity=0.101 Sum_probs=28.8
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID 228 (246)
Q Consensus 194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~ 228 (246)
.++++||+|+ |++|...++.+...|+ +|+.+.++
T Consensus 48 ~~k~vlITGas~gIG~aia~~L~~~G~-~Vi~~~~~ 82 (294)
T PRK07985 48 KDRKALVTGGDSGIGRAAAIAYAREGA-DVAISYLP 82 (294)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEecCC
Confidence 4578999998 8999999988888999 88887654
No 256
>PRK13243 glyoxylate reductase; Reviewed
Probab=88.02 E-value=1.5 Score=38.79 Aligned_cols=37 Identities=32% Similarity=0.512 Sum_probs=33.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 025895 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK 231 (246)
Q Consensus 194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~ 231 (246)
.|++|.|+|.|.+|...++.++..|+ +|++++++.+.
T Consensus 149 ~gktvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~ 185 (333)
T PRK13243 149 YGKTIGIIGFGRIGQAVARRAKGFGM-RILYYSRTRKP 185 (333)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCCh
Confidence 57899999999999999999999999 89999987543
No 257
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=87.79 E-value=1.9 Score=37.86 Aligned_cols=56 Identities=16% Similarity=0.056 Sum_probs=45.9
Q ss_pred hhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEc---CChhHHHHHhhcCCCcc
Q 025895 187 WNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGID---IDPKKFDRGMSCVSSSK 243 (246)
Q Consensus 187 ~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~---~~~~~~~~~~~lg~~~~ 243 (246)
.....+++|.++||-.. |.+|...+-++...|+ ++|++- .+.+|...++++|+.+.
T Consensus 95 e~~G~i~pg~stliEpTSGNtGigLA~~~a~~Gy-k~i~tmP~~ms~Ek~~~l~a~Gaeii 154 (362)
T KOG1252|consen 95 EKKGLITPGKSTLIEPTSGNTGIGLAYMAALRGY-KCIITMPEKMSKEKRILLRALGAEII 154 (362)
T ss_pred HHcCCccCCceEEEecCCCchHHHHHHHHHHcCc-eEEEEechhhhHHHHHHHHHcCCEEE
Confidence 34567899999999976 8899999999999999 777663 34588999999999854
No 258
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=87.68 E-value=1.9 Score=39.37 Aligned_cols=45 Identities=24% Similarity=0.310 Sum_probs=39.6
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcC
Q 025895 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCV 239 (246)
Q Consensus 194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg 239 (246)
...+++|.|.|.+|...++.+...|. .+++++.++++.+.+++.+
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~~~~~-~v~vid~~~~~~~~~~~~~ 274 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLEKEGY-SVKLIERDPERAEELAEEL 274 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHC
Confidence 45789999999999999999999999 8999999999888777654
No 259
>PRK09134 short chain dehydrogenase; Provisional
Probab=87.56 E-value=1.9 Score=35.95 Aligned_cols=38 Identities=21% Similarity=0.083 Sum_probs=29.3
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcC-ChhHH
Q 025895 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI-DPKKF 232 (246)
Q Consensus 194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~-~~~~~ 232 (246)
.+.++||+|+ |.+|...+..+...|+ +++.+.+ ++++.
T Consensus 8 ~~k~vlItGas~giG~~la~~l~~~g~-~v~~~~~~~~~~~ 47 (258)
T PRK09134 8 APRAALVTGAARRIGRAIALDLAAHGF-DVAVHYNRSRDEA 47 (258)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHH
Confidence 4578999998 8999998888888998 7776654 34443
No 260
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=87.36 E-value=1.9 Score=35.92 Aligned_cols=34 Identities=32% Similarity=0.554 Sum_probs=29.2
Q ss_pred CCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895 195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP 229 (246)
Q Consensus 195 ~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~ 229 (246)
++++||+|+ |++|...++.+...|+ +|+.+++++
T Consensus 10 ~k~~lItG~~~gIG~a~a~~l~~~G~-~vv~~~~~~ 44 (253)
T PRK08993 10 GKVAVVTGCDTGLGQGMALGLAEAGC-DIVGINIVE 44 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-EEEEecCcc
Confidence 578999988 8999999999888999 888886654
No 261
>PRK06701 short chain dehydrogenase; Provisional
Probab=87.35 E-value=1.7 Score=37.19 Aligned_cols=36 Identities=25% Similarity=0.259 Sum_probs=30.0
Q ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895 193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP 229 (246)
Q Consensus 193 ~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~ 229 (246)
-.+.++||+|+ |.+|...+..+...|+ +|+.+++++
T Consensus 44 ~~~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r~~ 80 (290)
T PRK06701 44 LKGKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYLDE 80 (290)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence 34678999998 8999998888888899 888887764
No 262
>PRK12831 putative oxidoreductase; Provisional
Probab=87.33 E-value=1.2 Score=41.12 Aligned_cols=36 Identities=31% Similarity=0.338 Sum_probs=31.3
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (246)
Q Consensus 192 ~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~ 228 (246)
...+.+|+|+|+|+.|+.++..++..|+ +|++++..
T Consensus 137 ~~~~~~V~IIG~GpAGl~aA~~l~~~G~-~V~v~e~~ 172 (464)
T PRK12831 137 EKKGKKVAVIGSGPAGLTCAGDLAKMGY-DVTIFEAL 172 (464)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhCCC-eEEEEecC
Confidence 4567899999999999999999999999 88888754
No 263
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=87.23 E-value=0.83 Score=41.10 Aligned_cols=34 Identities=38% Similarity=0.546 Sum_probs=29.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 025895 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 230 (246)
Q Consensus 196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~ 230 (246)
-.|+|+|+|+.|++++..+...|. +|.++++.+.
T Consensus 19 ~dV~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~ 52 (415)
T PRK07364 19 YDVAIVGGGIVGLTLAAALKDSGL-RIALIEAQPA 52 (415)
T ss_pred cCEEEECcCHHHHHHHHHHhcCCC-EEEEEecCCc
Confidence 458999999999999988888999 8999987653
No 264
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.20 E-value=1.6 Score=40.24 Aligned_cols=34 Identities=26% Similarity=0.376 Sum_probs=31.2
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (246)
Q Consensus 195 ~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~ 229 (246)
+++|+|+|.|..|++++.+++..|+ .|.+.|.++
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~~ 47 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLGA-KVTAFDKKS 47 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCCC-EEEEECCCC
Confidence 5789999999999999999999999 999999765
No 265
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=87.19 E-value=1.3 Score=37.19 Aligned_cols=34 Identities=35% Similarity=0.493 Sum_probs=30.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (246)
Q Consensus 196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~ 229 (246)
.+|+|.|+|++|..+++.+..+|..+++.+|...
T Consensus 25 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 58 (240)
T TIGR02355 25 SRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT 58 (240)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence 6899999999999999999999998998887654
No 266
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=87.18 E-value=2.2 Score=29.54 Aligned_cols=35 Identities=31% Similarity=0.434 Sum_probs=29.0
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Q 025895 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI 227 (246)
Q Consensus 193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~ 227 (246)
-.+++++|+|.|.+|...++.+...+..++.+.++
T Consensus 21 ~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 21 LKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 45688999999999999999999886557777765
No 267
>PLN02427 UDP-apiose/xylose synthase
Probab=87.18 E-value=1.7 Score=38.88 Aligned_cols=41 Identities=17% Similarity=0.294 Sum_probs=32.0
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHHc-CCCeEEEEcCChhHHHHH
Q 025895 194 PGSIVAVFGL-GTVGLAVAEGAKAA-GASRVIGIDIDPKKFDRG 235 (246)
Q Consensus 194 ~~~~VlI~Ga-g~~G~~ai~~a~~~-G~~~vi~~~~~~~~~~~~ 235 (246)
+..+|||+|+ |.+|...++.+... |. +|++++++.++.+.+
T Consensus 13 ~~~~VlVTGgtGfIGs~lv~~L~~~~g~-~V~~l~r~~~~~~~l 55 (386)
T PLN02427 13 KPLTICMIGAGGFIGSHLCEKLMTETPH-KVLALDVYNDKIKHL 55 (386)
T ss_pred cCcEEEEECCcchHHHHHHHHHHhcCCC-EEEEEecCchhhhhh
Confidence 3357999988 99999888888877 47 899998876655443
No 268
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=87.16 E-value=1.4 Score=35.95 Aligned_cols=34 Identities=29% Similarity=0.379 Sum_probs=30.9
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (246)
Q Consensus 195 ~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~ 228 (246)
..+|+|+|.|++|..+++.+..+|+.+++.+|..
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 3689999999999999999999999899999876
No 269
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=87.10 E-value=1.5 Score=33.03 Aligned_cols=35 Identities=29% Similarity=0.416 Sum_probs=30.2
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (246)
Q Consensus 195 ~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~ 229 (246)
..+|+|.|+|++|...+..+-..|+.+++.+|...
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 46899999999999999999999998899987654
No 270
>PRK14967 putative methyltransferase; Provisional
Probab=87.02 E-value=2.7 Score=34.60 Aligned_cols=48 Identities=25% Similarity=0.347 Sum_probs=37.1
Q ss_pred hhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS 237 (246)
Q Consensus 188 ~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~ 237 (246)
....++++++||-.|.|. |..++.+++. ++.++++++.+++.++.+++
T Consensus 30 ~~~~~~~~~~vLDlGcG~-G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~ 77 (223)
T PRK14967 30 AAEGLGPGRRVLDLCTGS-GALAVAAAAA-GAGSVTAVDISRRAVRSARL 77 (223)
T ss_pred HhcccCCCCeEEEecCCH-HHHHHHHHHc-CCCeEEEEECCHHHHHHHHH
Confidence 334567888999999976 8888888875 55589999999987775543
No 271
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=87.02 E-value=2.4 Score=38.28 Aligned_cols=42 Identities=31% Similarity=0.376 Sum_probs=35.3
Q ss_pred hhCCC-CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 025895 188 NTAKV-EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 230 (246)
Q Consensus 188 ~~~~~-~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~ 230 (246)
...+. -.|.+|.|.|.|.+|..+++.+...|+ +|++++.+..
T Consensus 199 ~~~g~~l~G~rVaVQG~GNVg~~aa~~l~~~GA-kvva~sds~g 241 (411)
T COG0334 199 KALGDDLEGARVAVQGFGNVGQYAAEKLHELGA-KVVAVSDSKG 241 (411)
T ss_pred HHcCCCcCCCEEEEECccHHHHHHHHHHHHcCC-EEEEEEcCCC
Confidence 33443 488999999999999999999999999 8888877765
No 272
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=86.98 E-value=0.95 Score=39.44 Aligned_cols=42 Identities=29% Similarity=0.309 Sum_probs=37.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhc
Q 025895 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSC 238 (246)
Q Consensus 196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~l 238 (246)
.+|.|+|.|.+|.-++.+|.-+|+ +|...+.+.+|+..+.++
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA-~Vtild~n~~rl~~ldd~ 210 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGA-DVTILDLNIDRLRQLDDL 210 (371)
T ss_pred ccEEEECCccccchHHHHHhccCC-eeEEEecCHHHHhhhhHh
Confidence 467778999999999999999999 999999999999888763
No 273
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=86.90 E-value=1.2 Score=36.42 Aligned_cols=34 Identities=38% Similarity=0.561 Sum_probs=30.8
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (246)
Q Consensus 195 ~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~ 228 (246)
..+|+|.|+|++|...++.+-+.|..+++.+|.+
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 3679999999999999999999999889999888
No 274
>PRK08328 hypothetical protein; Provisional
Probab=86.87 E-value=1.4 Score=36.78 Aligned_cols=35 Identities=40% Similarity=0.480 Sum_probs=30.6
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (246)
Q Consensus 195 ~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~ 229 (246)
+.+|+|+|+|++|..++..+-..|..+++.+|...
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 36799999999999999999999998999987543
No 275
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=86.72 E-value=1.7 Score=39.66 Aligned_cols=34 Identities=32% Similarity=0.508 Sum_probs=30.1
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID 228 (246)
Q Consensus 194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~ 228 (246)
+++++||+|+ |++|...++.+...|+ +|+++++.
T Consensus 209 ~g~~vlItGasggIG~~la~~l~~~Ga-~vi~~~~~ 243 (450)
T PRK08261 209 AGKVALVTGAARGIGAAIAEVLARDGA-HVVCLDVP 243 (450)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 5789999998 9999999999999999 88888774
No 276
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=86.71 E-value=1.3 Score=40.93 Aligned_cols=35 Identities=37% Similarity=0.497 Sum_probs=30.9
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (246)
Q Consensus 193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~ 228 (246)
+.+.+|+|+|+|+.|+.++..+...|. +|++++..
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~-~V~vie~~ 175 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAGH-KVTVFERA 175 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCC-cEEEEecC
Confidence 456799999999999999999999999 78888765
No 277
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=86.61 E-value=1.5 Score=38.36 Aligned_cols=35 Identities=37% Similarity=0.491 Sum_probs=32.1
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (246)
Q Consensus 194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~ 229 (246)
.|++|.|+|-|.+|...++.++..|. +|+++++..
T Consensus 144 ~gktvGIiG~G~IG~~vA~~~~~fgm-~V~~~d~~~ 178 (311)
T PRK08410 144 KGKKWGIIGLGTIGKRVAKIAQAFGA-KVVYYSTSG 178 (311)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhcCC-EEEEECCCc
Confidence 57899999999999999999999999 999998753
No 278
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=86.56 E-value=2.3 Score=36.80 Aligned_cols=34 Identities=32% Similarity=0.419 Sum_probs=28.8
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID 228 (246)
Q Consensus 194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~ 228 (246)
.++++||+|+ +++|...+..+...|+ +|+++++.
T Consensus 11 ~~k~~lVTGas~gIG~~ia~~L~~~Ga-~Vv~~~~~ 45 (306)
T PRK07792 11 SGKVAVVTGAAAGLGRAEALGLARLGA-TVVVNDVA 45 (306)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCC
Confidence 4578999988 8999998888888899 88888764
No 279
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=86.54 E-value=2.3 Score=37.43 Aligned_cols=50 Identities=18% Similarity=0.238 Sum_probs=39.6
Q ss_pred hhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCChhHHHHHhh
Q 025895 187 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRGMS 237 (246)
Q Consensus 187 ~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~-~~vi~~~~~~~~~~~~~~ 237 (246)
.+..+++++++||-+|+| .|..++.+++..+. ..|++++.+++..+.+++
T Consensus 73 l~~L~i~~g~~VLDIG~G-tG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~ 123 (322)
T PRK13943 73 MEWVGLDKGMRVLEIGGG-TGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKR 123 (322)
T ss_pred HHhcCCCCCCEEEEEeCC-ccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHH
Confidence 355678889999999997 59999999998764 369999999987665543
No 280
>PLN02214 cinnamoyl-CoA reductase
Probab=86.51 E-value=1.6 Score=38.42 Aligned_cols=37 Identities=24% Similarity=0.294 Sum_probs=31.7
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 025895 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK 231 (246)
Q Consensus 194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~ 231 (246)
++.+|||+|+ |.+|...+..+...|. +|+++.++.++
T Consensus 9 ~~~~vlVTGatGfIG~~l~~~L~~~G~-~V~~~~r~~~~ 46 (342)
T PLN02214 9 AGKTVCVTGAGGYIASWIVKILLERGY-TVKGTVRNPDD 46 (342)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCchh
Confidence 4678999998 9999999999889999 89998887654
No 281
>PRK06128 oxidoreductase; Provisional
Probab=86.38 E-value=1.7 Score=37.33 Aligned_cols=34 Identities=21% Similarity=0.183 Sum_probs=28.4
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID 228 (246)
Q Consensus 194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~ 228 (246)
.++++||+|+ |++|...+..+...|+ +|+.+.++
T Consensus 54 ~~k~vlITGas~gIG~~~a~~l~~~G~-~V~i~~~~ 88 (300)
T PRK06128 54 QGRKALITGADSGIGRATAIAFAREGA-DIALNYLP 88 (300)
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHcCC-EEEEEeCC
Confidence 4679999988 9999998888888999 78777554
No 282
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=86.34 E-value=1.5 Score=38.58 Aligned_cols=32 Identities=50% Similarity=0.761 Sum_probs=31.0
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Q 025895 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI 227 (246)
Q Consensus 195 ~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~ 227 (246)
|++|.|+|.|.+|...++.++..|+ +|++.+.
T Consensus 142 gkTvGIiG~G~IG~~va~~l~afgm-~v~~~d~ 173 (324)
T COG0111 142 GKTVGIIGLGRIGRAVAKRLKAFGM-KVIGYDP 173 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-eEEEECC
Confidence 7899999999999999999999999 9999998
No 283
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=86.33 E-value=1.9 Score=38.05 Aligned_cols=37 Identities=32% Similarity=0.441 Sum_probs=33.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 025895 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK 231 (246)
Q Consensus 194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~ 231 (246)
.+.+|.|+|.|.+|...++.++..|. +|++.++++++
T Consensus 145 ~g~~VgIIG~G~IG~~vA~~L~~~G~-~V~~~d~~~~~ 181 (330)
T PRK12480 145 KNMTVAIIGTGRIGAATAKIYAGFGA-TITAYDAYPNK 181 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCChhH
Confidence 56789999999999999999999999 99999988754
No 284
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=86.07 E-value=3.7 Score=35.34 Aligned_cols=54 Identities=19% Similarity=0.318 Sum_probs=42.9
Q ss_pred hhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895 182 GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS 237 (246)
Q Consensus 182 a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~ 237 (246)
.+..+.+..++++|.+||=+|.|- |.+++-+|+..|+ +|++++.|++..+.+++
T Consensus 60 k~~~~~~kl~L~~G~~lLDiGCGW-G~l~~~aA~~y~v-~V~GvTlS~~Q~~~~~~ 113 (283)
T COG2230 60 KLDLILEKLGLKPGMTLLDIGCGW-GGLAIYAAEEYGV-TVVGVTLSEEQLAYAEK 113 (283)
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCh-hHHHHHHHHHcCC-EEEEeeCCHHHHHHHHH
Confidence 344567889999999999888642 4567778888899 99999999998776654
No 285
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=86.07 E-value=1.3 Score=38.47 Aligned_cols=43 Identities=40% Similarity=0.631 Sum_probs=29.1
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHh
Q 025895 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM 236 (246)
Q Consensus 192 ~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~ 236 (246)
.+++++||=+|.| .|.+++..++ +|+++|+++|..+.-.+.++
T Consensus 159 ~~~g~~vLDvG~G-SGILaiaA~k-lGA~~v~a~DiDp~Av~~a~ 201 (295)
T PF06325_consen 159 VKPGKRVLDVGCG-SGILAIAAAK-LGAKKVVAIDIDPLAVEAAR 201 (295)
T ss_dssp SSTTSEEEEES-T-TSHHHHHHHH-TTBSEEEEEESSCHHHHHHH
T ss_pred ccCCCEEEEeCCc-HHHHHHHHHH-cCCCeEEEecCCHHHHHHHH
Confidence 5677888877652 2455544444 58889999999997665544
No 286
>PLN03013 cysteine synthase
Probab=86.05 E-value=2.7 Score=38.45 Aligned_cols=56 Identities=16% Similarity=0.132 Sum_probs=42.3
Q ss_pred hhCCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEE--cCChhHHHHHhhcCCCcc
Q 025895 188 NTAKVEPGSIVAVFG-LGTVGLAVAEGAKAAGASRVIGI--DIDPKKFDRGMSCVSSSK 243 (246)
Q Consensus 188 ~~~~~~~~~~VlI~G-ag~~G~~ai~~a~~~G~~~vi~~--~~~~~~~~~~~~lg~~~~ 243 (246)
+...+++|.+.+|.. +|..|++.+.+++.+|+.-++++ ..+++|++.++.+||++.
T Consensus 167 ~~G~l~pG~~~VVeaSSGN~G~ALA~~a~~~G~~~~VvvP~~~s~~K~~~ira~GAeVi 225 (429)
T PLN03013 167 QKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELV 225 (429)
T ss_pred HcCCcCCCCcEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHcCCEEE
Confidence 455567886656664 59999999999999999444444 345679999999999854
No 287
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=85.92 E-value=1.8 Score=38.03 Aligned_cols=36 Identities=36% Similarity=0.610 Sum_probs=33.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 025895 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 230 (246)
Q Consensus 194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~ 230 (246)
.|+++.|+|.|.+|.+.++.++..|+ +|+..+++..
T Consensus 145 ~gktvGIiG~GrIG~avA~r~~~Fgm-~v~y~~~~~~ 180 (324)
T COG1052 145 RGKTLGIIGLGRIGQAVARRLKGFGM-KVLYYDRSPN 180 (324)
T ss_pred CCCEEEEECCCHHHHHHHHHHhcCCC-EEEEECCCCC
Confidence 48899999999999999999999999 9999998864
No 288
>PRK06436 glycerate dehydrogenase; Provisional
Probab=85.77 E-value=1.8 Score=37.69 Aligned_cols=35 Identities=26% Similarity=0.284 Sum_probs=31.8
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (246)
Q Consensus 194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~ 229 (246)
.|++|.|+|-|.+|...++.++.+|+ +|++.+++.
T Consensus 121 ~gktvgIiG~G~IG~~vA~~l~afG~-~V~~~~r~~ 155 (303)
T PRK06436 121 YNKSLGILGYGGIGRRVALLAKAFGM-NIYAYTRSY 155 (303)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCC
Confidence 57899999999999999999999999 999998763
No 289
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=85.61 E-value=3.6 Score=37.42 Aligned_cols=49 Identities=16% Similarity=0.158 Sum_probs=42.0
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHH-HHhhcCCC
Q 025895 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD-RGMSCVSS 241 (246)
Q Consensus 193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~-~~~~lg~~ 241 (246)
-.+.++||+|+|-+|.+++..+...|+..|++.-|+.+|-+ +++++|+.
T Consensus 176 L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~ 225 (414)
T COG0373 176 LKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAE 225 (414)
T ss_pred cccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCe
Confidence 36689999999999999999999999889999999988765 56678854
No 290
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=85.48 E-value=2.3 Score=39.95 Aligned_cols=44 Identities=20% Similarity=0.178 Sum_probs=33.5
Q ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895 192 VEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG 235 (246)
Q Consensus 192 ~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~ 235 (246)
.-.|++|||+|+ |.+|...+.-....+.++++.+++++.++...
T Consensus 247 ~~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i 291 (588)
T COG1086 247 MLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLI 291 (588)
T ss_pred HcCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHH
Confidence 346899999998 89997654444444888999999999876544
No 291
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=85.47 E-value=0.66 Score=42.43 Aligned_cols=44 Identities=18% Similarity=0.216 Sum_probs=34.5
Q ss_pred hhCCCCCCCEEE----EECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHH
Q 025895 188 NTAKVEPGSIVA----VFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKF 232 (246)
Q Consensus 188 ~~~~~~~~~~Vl----I~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~ 232 (246)
...++++++.+| |+|+ |++|.+++|+++..|+ +|+++...+.+.
T Consensus 27 ~l~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~g~-~v~~~~~~~~~~ 75 (450)
T PRK08261 27 PLRRYRPGQPLLDGPVLVGGAGRLAEALAALLAGLGY-DVVANNDGGLTW 75 (450)
T ss_pred cccCCCCCCCCCCCceEEccCchhHHHHHHHHhhCCC-eeeecCcccccc
Confidence 345567777777 7765 9999999999999999 899887665533
No 292
>PLN02256 arogenate dehydrogenase
Probab=85.46 E-value=3.2 Score=36.20 Aligned_cols=53 Identities=13% Similarity=0.118 Sum_probs=38.8
Q ss_pred hhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCC
Q 025895 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVS 240 (246)
Q Consensus 186 l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~ 240 (246)
+.+...-....+|.|+|.|.+|...+..++..|. +|+++++++. .+.+.++|.
T Consensus 27 ~~~~~~~~~~~kI~IIG~G~mG~slA~~L~~~G~-~V~~~d~~~~-~~~a~~~gv 79 (304)
T PLN02256 27 LQEELEKSRKLKIGIVGFGNFGQFLAKTFVKQGH-TVLATSRSDY-SDIAAELGV 79 (304)
T ss_pred HhHhhccCCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECccH-HHHHHHcCC
Confidence 3344444455689999999999998888888887 8999988864 355555554
No 293
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=85.44 E-value=1.7 Score=39.22 Aligned_cols=39 Identities=21% Similarity=0.248 Sum_probs=33.0
Q ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 025895 192 VEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK 231 (246)
Q Consensus 192 ~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~ 231 (246)
-..+.+|||+|+ |.+|...+..+...|+ +|++++++..+
T Consensus 57 ~~~~~kVLVtGatG~IG~~l~~~Ll~~G~-~V~~l~R~~~~ 96 (390)
T PLN02657 57 EPKDVTVLVVGATGYIGKFVVRELVRRGY-NVVAVAREKSG 96 (390)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEEechhh
Confidence 345678999998 9999999999888999 89999887654
No 294
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=85.43 E-value=2.2 Score=34.83 Aligned_cols=35 Identities=23% Similarity=0.178 Sum_probs=29.7
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (246)
Q Consensus 194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~ 229 (246)
.+.+|||+|+|.+|...+..+...|+ +|++++...
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga-~V~VIs~~~ 43 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGA-HIVVISPEL 43 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEcCCC
Confidence 35789999999999999988888998 888887664
No 295
>PRK06932 glycerate dehydrogenase; Provisional
Probab=85.32 E-value=1.7 Score=38.10 Aligned_cols=35 Identities=34% Similarity=0.497 Sum_probs=31.5
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (246)
Q Consensus 194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~ 229 (246)
.|++|.|+|-|.+|...++.++.+|+ +|+++++..
T Consensus 146 ~gktvgIiG~G~IG~~va~~l~~fg~-~V~~~~~~~ 180 (314)
T PRK06932 146 RGSTLGVFGKGCLGTEVGRLAQALGM-KVLYAEHKG 180 (314)
T ss_pred CCCEEEEECCCHHHHHHHHHHhcCCC-EEEEECCCc
Confidence 46899999999999999999999999 899987653
No 296
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=85.21 E-value=2.1 Score=36.04 Aligned_cols=35 Identities=34% Similarity=0.474 Sum_probs=30.6
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (246)
Q Consensus 195 ~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~ 229 (246)
..+|+|+|+|++|..++..+...|..++..+|...
T Consensus 32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 37899999999999999999999998888886543
No 297
>PLN00198 anthocyanidin reductase; Provisional
Probab=85.17 E-value=2 Score=37.49 Aligned_cols=35 Identities=20% Similarity=0.134 Sum_probs=29.6
Q ss_pred CCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChh
Q 025895 195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK 230 (246)
Q Consensus 195 ~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~ 230 (246)
+.+|||+|+ |.+|...+..+...|+ +|+++.++.+
T Consensus 9 ~~~vlItG~~GfIG~~l~~~L~~~g~-~V~~~~r~~~ 44 (338)
T PLN00198 9 KKTACVIGGTGFLASLLIKLLLQKGY-AVNTTVRDPE 44 (338)
T ss_pred CCeEEEECCchHHHHHHHHHHHHCCC-EEEEEECCCC
Confidence 578999987 9999999999988999 8887766654
No 298
>PRK06487 glycerate dehydrogenase; Provisional
Probab=85.04 E-value=1.9 Score=37.80 Aligned_cols=34 Identities=35% Similarity=0.448 Sum_probs=31.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (246)
Q Consensus 194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~ 228 (246)
.|++|.|+|-|.+|...++.++..|+ +|++.++.
T Consensus 147 ~gktvgIiG~G~IG~~vA~~l~~fgm-~V~~~~~~ 180 (317)
T PRK06487 147 EGKTLGLLGHGELGGAVARLAEAFGM-RVLIGQLP 180 (317)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECCC
Confidence 56799999999999999999999999 89999865
No 299
>KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=85.02 E-value=2.6 Score=36.75 Aligned_cols=46 Identities=28% Similarity=0.271 Sum_probs=39.2
Q ss_pred CCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895 191 KVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS 237 (246)
Q Consensus 191 ~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~ 237 (246)
..++-..++|+|. .++|++...-++..|+ .|.++.++.+|+..+++
T Consensus 29 ~~k~~~hi~itggS~glgl~la~e~~~~ga-~Vti~ar~~~kl~~a~~ 75 (331)
T KOG1210|consen 29 KPKPRRHILITGGSSGLGLALALECKREGA-DVTITARSGKKLLEAKA 75 (331)
T ss_pred ccCccceEEEecCcchhhHHHHHHHHHccC-ceEEEeccHHHHHHHHh
Confidence 3455578899976 8999999999999999 99999999999887764
No 300
>PRK06141 ornithine cyclodeaminase; Validated
Probab=84.99 E-value=3.3 Score=36.17 Aligned_cols=44 Identities=20% Similarity=0.141 Sum_probs=34.9
Q ss_pred CCCCEEEEECCCHHHHHHHHHHH-HcCCCeEEEEcCChhHHHHHh
Q 025895 193 EPGSIVAVFGLGTVGLAVAEGAK-AAGASRVIGIDIDPKKFDRGM 236 (246)
Q Consensus 193 ~~~~~VlI~Gag~~G~~ai~~a~-~~G~~~vi~~~~~~~~~~~~~ 236 (246)
....+|+|+|+|..|...+.... ..+..+|.+.+++++|.+.+.
T Consensus 123 ~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a 167 (314)
T PRK06141 123 KDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALA 167 (314)
T ss_pred CCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHH
Confidence 55688999999999999876444 467779999999998866543
No 301
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=84.90 E-value=3.5 Score=36.98 Aligned_cols=56 Identities=13% Similarity=0.128 Sum_probs=43.0
Q ss_pred hhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEc--CChhHHHHHhhcCCCcc
Q 025895 188 NTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGID--IDPKKFDRGMSCVSSSK 243 (246)
Q Consensus 188 ~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~--~~~~~~~~~~~lg~~~~ 243 (246)
....+++|.+.+|... |..|++.+.+|+.+|+.-++++. .+.+|++.++.+||++.
T Consensus 103 ~~G~i~pG~~~vV~aSsGN~G~alA~~a~~~G~~~~ivvp~~~~~~k~~~lr~~GA~Vi 161 (368)
T PLN02556 103 KKNLITPGKTTLIEPTSGNMGISLAFMAAMKGYKMILTMPSYTSLERRVTMRAFGAELV 161 (368)
T ss_pred HcCCcCCCCCEEEEeCCchHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEE
Confidence 4455778866677665 99999999999999995555544 34689999999999854
No 302
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=84.86 E-value=1.9 Score=37.73 Aligned_cols=37 Identities=19% Similarity=0.254 Sum_probs=32.7
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 025895 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK 231 (246)
Q Consensus 194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~ 231 (246)
.+++|.|+|.|.+|...++.++..|+ +|++++++.++
T Consensus 135 ~g~tvgIvG~G~IG~~vA~~l~afG~-~V~~~~~~~~~ 171 (312)
T PRK15469 135 EDFTIGILGAGVLGSKVAQSLQTWGF-PLRCWSRSRKS 171 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCCCC
Confidence 57899999999999999999999999 89999876543
No 303
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=84.79 E-value=2.4 Score=36.63 Aligned_cols=38 Identities=26% Similarity=0.337 Sum_probs=29.3
Q ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 025895 193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK 231 (246)
Q Consensus 193 ~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~ 231 (246)
-.|+.|||+|+ +++|.+.++=...+|+ +++..|.+++-
T Consensus 36 v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~ 74 (300)
T KOG1201|consen 36 VSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQG 74 (300)
T ss_pred ccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccc
Confidence 36789999988 7999876665556777 78888877753
No 304
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=84.78 E-value=4.3 Score=35.00 Aligned_cols=56 Identities=14% Similarity=0.130 Sum_probs=42.1
Q ss_pred hhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC--ChhHHHHHhhcCCCcc
Q 025895 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI--DPKKFDRGMSCVSSSK 243 (246)
Q Consensus 188 ~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~--~~~~~~~~~~lg~~~~ 243 (246)
....+.++++|+....|..|.+.+.+++.+|..-++.+.. ++.|++.++.+|+++.
T Consensus 52 ~~g~~~~g~~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~ 109 (290)
T TIGR01138 52 KRGEIKPGDVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERKAAMRAYGAELI 109 (290)
T ss_pred HcCCCCCCCEEEEECCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCEEE
Confidence 3444566777666566999999999999999955555544 3579999999999854
No 305
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=84.62 E-value=2.3 Score=36.08 Aligned_cols=34 Identities=32% Similarity=0.352 Sum_probs=30.0
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Q 025895 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI 227 (246)
Q Consensus 193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~ 227 (246)
-++.+|+|.|-|.+|+.+++++..+|+ +|+++..
T Consensus 36 l~g~~vaIqGfGnVG~~~a~~L~e~Ga-kvvaVsD 69 (254)
T cd05313 36 LKGKRVAISGSGNVAQYAAEKLLELGA-KVVTLSD 69 (254)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence 367899999999999999999999999 8886644
No 306
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.44 E-value=4.7 Score=34.82 Aligned_cols=56 Identities=20% Similarity=0.176 Sum_probs=38.8
Q ss_pred ccccchhhhhhhhhhCC-CCCCCEEEEECCCH-HHHHHHHHHHHcCCCeEEEEcCChhHH
Q 025895 175 LGCGVPTGLGAVWNTAK-VEPGSIVAVFGLGT-VGLAVAEGAKAAGASRVIGIDIDPKKF 232 (246)
Q Consensus 175 l~~~~~ta~~~l~~~~~-~~~~~~VlI~Gag~-~G~~ai~~a~~~G~~~vi~~~~~~~~~ 232 (246)
++|....... +.+..+ --.|++++|+|.|. +|.-.+.++...|+ +|+++.+....+
T Consensus 138 ~PcTp~ai~~-ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~ga-tVtv~~s~t~~l 195 (286)
T PRK14175 138 VPCTPLGIME-ILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNA-SVTILHSRSKDM 195 (286)
T ss_pred CCCcHHHHHH-HHHHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCCchhH
Confidence 4444333333 334444 34688999999965 99999999999999 888887754433
No 307
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=84.36 E-value=1.6 Score=42.22 Aligned_cols=37 Identities=35% Similarity=0.293 Sum_probs=32.3
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (246)
Q Consensus 192 ~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~ 229 (246)
.++..+|+|+|+|..|++++..++..|+ +|.++++.+
T Consensus 78 ~~~~~~VlIVGgGIaGLalAlaL~r~Gi-~V~V~Er~~ 114 (668)
T PLN02927 78 KKKKSRVLVAGGGIGGLVFALAAKKKGF-DVLVFEKDL 114 (668)
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHhcCC-eEEEEeccc
Confidence 3566789999999999999999999999 899998754
No 308
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=84.30 E-value=3.4 Score=33.76 Aligned_cols=25 Identities=44% Similarity=0.425 Sum_probs=23.4
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCC
Q 025895 195 GSIVAVFGLGTVGLAVAEGAKAAGA 219 (246)
Q Consensus 195 ~~~VlI~Gag~~G~~ai~~a~~~G~ 219 (246)
+.+|||+|+|.+|..-++.+...|+
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga 33 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGA 33 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCC
Confidence 5799999999999999999999999
No 309
>PRK14031 glutamate dehydrogenase; Provisional
Probab=84.22 E-value=2.2 Score=39.18 Aligned_cols=34 Identities=26% Similarity=0.331 Sum_probs=29.9
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Q 025895 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI 227 (246)
Q Consensus 193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~ 227 (246)
-.+.+|+|.|.|.+|..+++.+...|+ +|+++..
T Consensus 226 l~g~rVaVQGfGNVG~~aA~~L~e~GA-kVVaVSD 259 (444)
T PRK14031 226 LKGKVCLVSGSGNVAQYTAEKVLELGG-KVVTMSD 259 (444)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence 367899999999999999999999999 8887544
No 310
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.22 E-value=3.4 Score=35.66 Aligned_cols=39 Identities=21% Similarity=0.152 Sum_probs=32.6
Q ss_pred CCCCEEEEECCCH-HHHHHHHHHHHcCCCeEEEEcCChhHH
Q 025895 193 EPGSIVAVFGLGT-VGLAVAEGAKAAGASRVIGIDIDPKKF 232 (246)
Q Consensus 193 ~~~~~VlI~Gag~-~G~~ai~~a~~~G~~~vi~~~~~~~~~ 232 (246)
-.|++++|+|.|. +|...+.++...|+ +|.++.+....+
T Consensus 157 l~Gk~vvViG~gg~vGkpia~~L~~~ga-tVtv~~~~t~~L 196 (283)
T PRK14192 157 LAGKHAVVVGRSAILGKPMAMMLLNANA-TVTICHSRTQNL 196 (283)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCC-EEEEEeCCchhH
Confidence 4678999999976 99999999999999 898887754444
No 311
>PRK07340 ornithine cyclodeaminase; Validated
Probab=84.09 E-value=4 Score=35.54 Aligned_cols=43 Identities=19% Similarity=0.039 Sum_probs=35.6
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHH-cCCCeEEEEcCChhHHHHH
Q 025895 193 EPGSIVAVFGLGTVGLAVAEGAKA-AGASRVIGIDIDPKKFDRG 235 (246)
Q Consensus 193 ~~~~~VlI~Gag~~G~~ai~~a~~-~G~~~vi~~~~~~~~~~~~ 235 (246)
....+++|+|+|..|...+..+.. .+.++|.+.+++++|.+.+
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~ 166 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAF 166 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHH
Confidence 456789999999999998888764 6888899999999876644
No 312
>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]
Probab=83.99 E-value=0.86 Score=39.56 Aligned_cols=51 Identities=27% Similarity=0.180 Sum_probs=45.3
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895 191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS 242 (246)
Q Consensus 191 ~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~ 242 (246)
...++.++++.|+|..|+.++..++..|+ .|...+...++.+..+.+|+.+
T Consensus 160 gtv~pA~vlv~G~Gvagl~aiata~~lG~-iVt~rdlrm~~Keqv~s~Ga~f 210 (356)
T COG3288 160 GTVSPAKVLVIGAGVAGLAAIATAVRLGA-IVTARDLRMFKKEQVESLGAKF 210 (356)
T ss_pred ccccchhhhhhhHHHHHHHHHHHHhhcce-EEehhhhhhHHhhhhhhccccc
Confidence 34566788999999999999999999999 9999999999999999999874
No 313
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=83.96 E-value=2.4 Score=34.92 Aligned_cols=34 Identities=24% Similarity=0.381 Sum_probs=30.6
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (246)
Q Consensus 195 ~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~ 228 (246)
..+|+|+|+|++|...++.+-.+|..+++.+|..
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 3679999999999999999999999889999877
No 314
>PRK08317 hypothetical protein; Provisional
Probab=83.95 E-value=3.6 Score=33.51 Aligned_cols=52 Identities=29% Similarity=0.403 Sum_probs=41.2
Q ss_pred hhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCChhHHHHHhhc
Q 025895 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDRGMSC 238 (246)
Q Consensus 186 l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G-~~~vi~~~~~~~~~~~~~~l 238 (246)
+.+...+.++++||-+|.|. |..+..+++..+ ..++++++.+++.++.+++.
T Consensus 11 ~~~~~~~~~~~~vLdiG~G~-G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~ 63 (241)
T PRK08317 11 TFELLAVQPGDRVLDVGCGP-GNDARELARRVGPEGRVVGIDRSEAMLALAKER 63 (241)
T ss_pred HHHHcCCCCCCEEEEeCCCC-CHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Confidence 34567788899999999865 788888888773 24899999999988877654
No 315
>PF11017 DUF2855: Protein of unknown function (DUF2855); InterPro: IPR021276 This family of proteins has no known function.
Probab=83.95 E-value=12 Score=32.84 Aligned_cols=47 Identities=15% Similarity=0.085 Sum_probs=32.2
Q ss_pred CCCCEEEEECC-CHHHHHHHHHHH-HcCCCeEEEEcCChhHHHHHhhcCC
Q 025895 193 EPGSIVAVFGL-GTVGLAVAEGAK-AAGASRVIGIDIDPKKFDRGMSCVS 240 (246)
Q Consensus 193 ~~~~~VlI~Ga-g~~G~~ai~~a~-~~G~~~vi~~~~~~~~~~~~~~lg~ 240 (246)
-..+.|||.+| +-+++..+..++ ..+.-++|.+.+..++ +..+.+|.
T Consensus 134 ~ga~~vvl~SASSKTA~glA~~L~~~~~~~~~vglTS~~N~-~Fve~lg~ 182 (314)
T PF11017_consen 134 FGAAQVVLSSASSKTAIGLAYCLKKQRGPPKVVGLTSARNV-AFVESLGC 182 (314)
T ss_pred CCccEEEEeccchHHHHHHHHHhhccCCCceEEEEecCcch-hhhhccCC
Confidence 34467888887 778888777777 4555589999555444 46666664
No 316
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=83.93 E-value=1.8 Score=36.67 Aligned_cols=33 Identities=30% Similarity=0.301 Sum_probs=28.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (246)
Q Consensus 196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~ 229 (246)
-.|+|+|+|+.|+.++..+...|. +|+.++...
T Consensus 26 ~DVvIVGgGpAGl~AA~~la~~G~-~V~liEk~~ 58 (257)
T PRK04176 26 VDVAIVGAGPSGLTAAYYLAKAGL-KVAVFERKL 58 (257)
T ss_pred CCEEEECccHHHHHHHHHHHhCCC-eEEEEecCC
Confidence 458899999999998888888999 888887654
No 317
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=83.93 E-value=2.4 Score=32.22 Aligned_cols=32 Identities=31% Similarity=0.505 Sum_probs=28.8
Q ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (246)
Q Consensus 197 ~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~ 228 (246)
+|+|.|.|++|...+..+-..|.+++..+|..
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 48899999999999999999999889998765
No 318
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=83.89 E-value=1.8 Score=36.66 Aligned_cols=33 Identities=27% Similarity=0.288 Sum_probs=28.6
Q ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (246)
Q Consensus 196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~ 229 (246)
-.|+|+|+|+.|++++..+...|. +|+.++++.
T Consensus 22 ~DVvIVGgGpAGL~aA~~la~~G~-~V~vlEk~~ 54 (254)
T TIGR00292 22 SDVIIVGAGPSGLTAAYYLAKNGL-KVCVLERSL 54 (254)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Confidence 458899999999999998888998 888887764
No 319
>PRK08291 ectoine utilization protein EutC; Validated
Probab=83.87 E-value=4 Score=35.91 Aligned_cols=44 Identities=23% Similarity=0.078 Sum_probs=35.2
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHH-cCCCeEEEEcCChhHHHHHh
Q 025895 193 EPGSIVAVFGLGTVGLAVAEGAKA-AGASRVIGIDIDPKKFDRGM 236 (246)
Q Consensus 193 ~~~~~VlI~Gag~~G~~ai~~a~~-~G~~~vi~~~~~~~~~~~~~ 236 (246)
+...+++|+|+|..+.+.+..+.. .++++|.+.+++++|.+.+.
T Consensus 130 ~~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~ 174 (330)
T PRK08291 130 EDASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYA 174 (330)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHH
Confidence 445789999999999887776664 67779999999998877554
No 320
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=83.83 E-value=2.6 Score=37.78 Aligned_cols=35 Identities=29% Similarity=0.259 Sum_probs=31.6
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (246)
Q Consensus 194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~ 228 (246)
.+.+|+|+|+|++|..++..+...|..+++.+|..
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 45689999999999999999999999999999887
No 321
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=83.81 E-value=4.9 Score=33.03 Aligned_cols=52 Identities=23% Similarity=0.263 Sum_probs=41.3
Q ss_pred hhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHH----HHhhcCC
Q 025895 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD----RGMSCVS 240 (246)
Q Consensus 186 l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~----~~~~lg~ 240 (246)
+.+...++++++||=+|.| .|..++.+++..+ +|+.+++.++-.+ .++.+|-
T Consensus 64 m~~~L~~~~g~~VLEIGtG-sGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~ 119 (209)
T COG2518 64 MLQLLELKPGDRVLEIGTG-SGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGY 119 (209)
T ss_pred HHHHhCCCCCCeEEEECCC-chHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCC
Confidence 4577889999999999874 4899999999888 7999999887333 3455665
No 322
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=83.69 E-value=2.6 Score=35.01 Aligned_cols=35 Identities=34% Similarity=0.356 Sum_probs=30.5
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (246)
Q Consensus 195 ~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~ 229 (246)
..+|+|.|.|++|..++..+-.+|..+++.+|...
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 36899999999999999999999998888886543
No 323
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=83.69 E-value=2.4 Score=37.57 Aligned_cols=35 Identities=31% Similarity=0.350 Sum_probs=31.1
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (246)
Q Consensus 195 ~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~ 229 (246)
+.+|+|+|+|++|..++..+-.+|..+++.+|...
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 36799999999999999999999998899888764
No 324
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=83.61 E-value=2.2 Score=38.07 Aligned_cols=35 Identities=23% Similarity=0.302 Sum_probs=30.5
Q ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895 193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID 228 (246)
Q Consensus 193 ~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~ 228 (246)
..+.+|||+|+ |.+|...+..+...|. +|+++++.
T Consensus 19 ~~~~~IlVtGgtGfIG~~l~~~L~~~G~-~V~~v~r~ 54 (370)
T PLN02695 19 SEKLRICITGAGGFIASHIARRLKAEGH-YIIASDWK 54 (370)
T ss_pred CCCCEEEEECCccHHHHHHHHHHHhCCC-EEEEEEec
Confidence 35578999998 9999999999999998 89998864
No 325
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=83.46 E-value=2.2 Score=37.64 Aligned_cols=37 Identities=35% Similarity=0.372 Sum_probs=31.6
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (246)
Q Consensus 192 ~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~ 229 (246)
.+.+.+|+|+|+|..|+.++..+...|. +|+.++..+
T Consensus 15 ~~~~~~VvIIG~G~aGl~aA~~l~~~g~-~v~lie~~~ 51 (352)
T PRK12770 15 PPTGKKVAIIGAGPAGLAAAGYLACLGY-EVHVYDKLP 51 (352)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence 4567899999999999999999999998 788887754
No 326
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=83.39 E-value=1.8 Score=43.72 Aligned_cols=36 Identities=25% Similarity=0.147 Sum_probs=31.7
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (246)
Q Consensus 193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~ 229 (246)
..+++|+|+|+|+.|+.|+..+...|+ .|++++..+
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~-~VtVfE~~~ 339 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVEGF-PVTVFEAFH 339 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEeeCC
Confidence 357899999999999999999999999 898887654
No 327
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=83.24 E-value=1.7 Score=40.95 Aligned_cols=33 Identities=39% Similarity=0.485 Sum_probs=28.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (246)
Q Consensus 196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~ 229 (246)
..|+|+|+|+.|+.++..+...|. +|+++++.+
T Consensus 24 ~dVlIVGaGpaGl~lA~~L~~~G~-~v~viE~~~ 56 (547)
T PRK08132 24 HPVVVVGAGPVGLALAIDLAQQGV-PVVLLDDDD 56 (547)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCC-cEEEEeCCC
Confidence 459999999999998888888999 888887665
No 328
>PRK14030 glutamate dehydrogenase; Provisional
Probab=83.15 E-value=2.5 Score=38.79 Aligned_cols=32 Identities=38% Similarity=0.542 Sum_probs=29.0
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Q 025895 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGI 225 (246)
Q Consensus 193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~ 225 (246)
-.+.+|+|.|-|.+|..+++++..+|+ +|+++
T Consensus 226 l~g~~vaIQGfGnVG~~aA~~L~e~Ga-kvVav 257 (445)
T PRK14030 226 IKGKTVAISGFGNVAWGAATKATELGA-KVVTI 257 (445)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEE
Confidence 357899999999999999999999999 88884
No 329
>PRK08223 hypothetical protein; Validated
Probab=83.14 E-value=2.4 Score=36.66 Aligned_cols=35 Identities=31% Similarity=0.277 Sum_probs=31.0
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (246)
Q Consensus 195 ~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~ 229 (246)
..+|+|+|+|++|..+++.+-++|..++..+|...
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~ 61 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV 61 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 36899999999999999999999998888887654
No 330
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=83.07 E-value=2.3 Score=39.01 Aligned_cols=35 Identities=34% Similarity=0.368 Sum_probs=30.4
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (246)
Q Consensus 193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~ 228 (246)
..+.+|+|+|+|+.|+.++..+...|+ +|++++..
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~-~V~vie~~ 165 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAKAGH-SVTVFEAL 165 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCC-cEEEEecC
Confidence 356789999999999999999999999 78888764
No 331
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=83.06 E-value=2.5 Score=37.39 Aligned_cols=33 Identities=36% Similarity=0.442 Sum_probs=30.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (246)
Q Consensus 196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~ 228 (246)
.+|+|+|+|++|..++..+-..|..+++.+|..
T Consensus 25 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 25 KHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 679999999999999999999999999999875
No 332
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=82.94 E-value=4.4 Score=34.89 Aligned_cols=49 Identities=20% Similarity=0.091 Sum_probs=37.7
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC--ChhHHHHHhhcCCCcc
Q 025895 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI--DPKKFDRGMSCVSSSK 243 (246)
Q Consensus 195 ~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~--~~~~~~~~~~lg~~~~ 243 (246)
.++|+..+.|..|.+.+.+++..|++-++.+.. +++|++.++.+|+++.
T Consensus 65 ~~~iv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~l~~~Ga~vi 115 (304)
T cd01562 65 AKGVVAASAGNHAQGVAYAAKLLGIPATIVMPETAPAAKVDATRAYGAEVV 115 (304)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEE
Confidence 355666677999999999999999955555543 4568889999999853
No 333
>PRK11761 cysM cysteine synthase B; Provisional
Probab=82.92 E-value=5.6 Score=34.41 Aligned_cols=56 Identities=14% Similarity=0.116 Sum_probs=42.8
Q ss_pred hhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC--ChhHHHHHhhcCCCcc
Q 025895 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI--DPKKFDRGMSCVSSSK 243 (246)
Q Consensus 188 ~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~--~~~~~~~~~~lg~~~~ 243 (246)
....+.++++|+....|..|++.+..++.+|..-++.+.. +++|++.++.+||++.
T Consensus 56 ~~g~~~~g~~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~ 113 (296)
T PRK11761 56 KRGEIKPGDTLIEATSGNTGIALAMIAAIKGYRMKLIMPENMSQERRAAMRAYGAELI 113 (296)
T ss_pred HcCCCCCCCEEEEeCCChHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEE
Confidence 3444567777766666999999999999999955555543 4579999999999854
No 334
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=82.90 E-value=4.4 Score=35.61 Aligned_cols=43 Identities=23% Similarity=0.174 Sum_probs=35.1
Q ss_pred CCCCEEEEECCCHHHHHHHHHHH-HcCCCeEEEEcCChhHHHHH
Q 025895 193 EPGSIVAVFGLGTVGLAVAEGAK-AAGASRVIGIDIDPKKFDRG 235 (246)
Q Consensus 193 ~~~~~VlI~Gag~~G~~ai~~a~-~~G~~~vi~~~~~~~~~~~~ 235 (246)
+...+++|+|+|..+.+.+..+. ..++++|.+.+++.+|.+.+
T Consensus 127 ~~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~ 170 (326)
T TIGR02992 127 EDSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEAL 170 (326)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHH
Confidence 45578999999999988777776 57888899999999886644
No 335
>PRK08618 ornithine cyclodeaminase; Validated
Probab=82.85 E-value=5.5 Score=34.95 Aligned_cols=44 Identities=16% Similarity=0.041 Sum_probs=34.9
Q ss_pred CCCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEEcCChhHHHHHh
Q 025895 193 EPGSIVAVFGLGTVGLAVAEGA-KAAGASRVIGIDIDPKKFDRGM 236 (246)
Q Consensus 193 ~~~~~VlI~Gag~~G~~ai~~a-~~~G~~~vi~~~~~~~~~~~~~ 236 (246)
+..++++|+|+|..+...+..+ ...++++|.+++++++|.+.+.
T Consensus 125 ~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~ 169 (325)
T PRK08618 125 EDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFA 169 (325)
T ss_pred CCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHH
Confidence 4567899999999998776544 4678889999999998876443
No 336
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=82.77 E-value=5.1 Score=33.36 Aligned_cols=34 Identities=35% Similarity=0.522 Sum_probs=29.0
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (246)
Q Consensus 194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~ 228 (246)
.+.+|+|.|-|.+|..+++++...|+ +|+++..+
T Consensus 30 ~~~~v~I~G~G~VG~~~a~~L~~~g~-~vv~v~D~ 63 (227)
T cd01076 30 AGARVAIQGFGNVGSHAARFLHEAGA-KVVAVSDS 63 (227)
T ss_pred cCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence 56899999999999999999999999 88855333
No 337
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=82.70 E-value=2.7 Score=38.19 Aligned_cols=35 Identities=29% Similarity=0.477 Sum_probs=32.0
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (246)
Q Consensus 194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~ 229 (246)
.|++|.|+|-|.+|...++.++.+|+ +|++.++..
T Consensus 150 ~gktvGIiG~G~IG~~vA~~~~~fGm-~V~~~d~~~ 184 (409)
T PRK11790 150 RGKTLGIVGYGHIGTQLSVLAESLGM-RVYFYDIED 184 (409)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCCc
Confidence 57899999999999999999999999 999998754
No 338
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=82.57 E-value=2.2 Score=43.21 Aligned_cols=36 Identities=33% Similarity=0.323 Sum_probs=31.4
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (246)
Q Consensus 193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~ 229 (246)
..+++|+|+|+|+.|+.++..+...|. +|++++..+
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~-~VtV~Ek~~ 572 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGH-PVTVFEREE 572 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCC-eEEEEeccc
Confidence 457889999999999999999999999 888887653
No 339
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=82.25 E-value=1.9 Score=40.45 Aligned_cols=33 Identities=33% Similarity=0.475 Sum_probs=29.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (246)
Q Consensus 196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~ 229 (246)
-.|+|+|+|+.|+.++..+...|. +|+++++.+
T Consensus 11 ~dV~IVGaGp~Gl~lA~~L~~~G~-~v~v~Er~~ 43 (538)
T PRK06183 11 TDVVIVGAGPVGLTLANLLGQYGV-RVLVLERWP 43 (538)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Confidence 469999999999998888888999 899998775
No 340
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=82.18 E-value=3 Score=35.68 Aligned_cols=35 Identities=31% Similarity=0.479 Sum_probs=30.8
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (246)
Q Consensus 194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~ 228 (246)
.+.+|+|+|.|++|..++..+-..|..+++.+|..
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 34689999999999999999999998888888765
No 341
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=82.16 E-value=6.8 Score=33.78 Aligned_cols=56 Identities=16% Similarity=0.143 Sum_probs=41.0
Q ss_pred hhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC--ChhHHHHHhhcCCCcc
Q 025895 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI--DPKKFDRGMSCVSSSK 243 (246)
Q Consensus 188 ~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~--~~~~~~~~~~lg~~~~ 243 (246)
+.....++++|+-..+|..|.+.+..|+..|+.-++.+.. ++.|++.++.+||++.
T Consensus 50 ~~g~~~~g~~vv~aSsGN~g~alA~~a~~~Gl~~~i~vp~~~~~~k~~~~~~~GA~v~ 107 (298)
T TIGR01139 50 KRGLLKPGKTIVEPTSGNTGIALAMVAAARGYKLILTMPETMSIERRKLLKAYGAELV 107 (298)
T ss_pred HcCCCCCCCEEEEeCCChhHHHHHHHHHHcCCeEEEEeCCccCHHHHHHHHHcCCEEE
Confidence 3344566666644456999999999999999955555543 3568899999999854
No 342
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=82.16 E-value=2.6 Score=38.74 Aligned_cols=36 Identities=31% Similarity=0.400 Sum_probs=30.8
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (246)
Q Consensus 193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~ 229 (246)
..+.+|+|+|+|+.|+.++..+...|. +|++++..+
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~-~V~lie~~~ 173 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGY-DVTIFEARD 173 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccCC
Confidence 456789999999999999998888998 888887653
No 343
>PLN02206 UDP-glucuronate decarboxylase
Probab=81.95 E-value=2.9 Score=38.44 Aligned_cols=34 Identities=35% Similarity=0.329 Sum_probs=29.7
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID 228 (246)
Q Consensus 194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~ 228 (246)
++.+|||+|+ |.+|...+..+...|. +|+++++.
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~-~V~~ld~~ 152 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARGD-SVIVVDNF 152 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCcC-EEEEEeCC
Confidence 5578999998 9999999999999999 89988753
No 344
>PLN02735 carbamoyl-phosphate synthase
Probab=81.81 E-value=2.4 Score=43.57 Aligned_cols=52 Identities=21% Similarity=0.323 Sum_probs=38.0
Q ss_pred cchhhhhhhhhhCCCCCCCEEEEECCCHH-----------HHHHHHHHHHcCCCeEEEEcCChh
Q 025895 178 GVPTGLGAVWNTAKVEPGSIVAVFGLGTV-----------GLAVAEGAKAAGASRVIGIDIDPK 230 (246)
Q Consensus 178 ~~~ta~~~l~~~~~~~~~~~VlI~Gag~~-----------G~~ai~~a~~~G~~~vi~~~~~~~ 230 (246)
....+|++......-..-++|||+|+|++ |..++..++.+|+ .|+.++.+++
T Consensus 6 ~~~~~~~~~~~~~~~~~~kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke~G~-~Vi~vd~np~ 68 (1102)
T PLN02735 6 TVTRAWSAATKAGKRTDLKKIMILGAGPIVIGQACEFDYSGTQACKALKEEGY-EVVLINSNPA 68 (1102)
T ss_pred cceecccccccCCcccCCCEEEEECCCccccccceeecchHHHHHHHHHHcCC-EEEEEeCCcc
Confidence 44557776544333444579999999874 5568999999999 8999988774
No 345
>PRK10717 cysteine synthase A; Provisional
Probab=81.79 E-value=6.7 Score=34.40 Aligned_cols=56 Identities=21% Similarity=0.168 Sum_probs=41.4
Q ss_pred hhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC--ChhHHHHHhhcCCCcc
Q 025895 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI--DPKKFDRGMSCVSSSK 243 (246)
Q Consensus 188 ~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~--~~~~~~~~~~lg~~~~ 243 (246)
.....+++++|+....|..|++....|+.+|..-++.+.. ++.|++.++.+||++.
T Consensus 57 ~~g~~~~g~~vv~aSsGN~g~alA~~a~~~G~~~~vv~p~~~~~~k~~~~~~~GA~V~ 114 (330)
T PRK10717 57 KRGLLKPGGTIVEGTAGNTGIGLALVAAARGYKTVIVMPETQSQEKKDLLRALGAELV 114 (330)
T ss_pred HcCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEE
Confidence 3344566777666566999999999999999955555533 3468899999999854
No 346
>PLN02572 UDP-sulfoquinovose synthase
Probab=81.60 E-value=2.7 Score=38.53 Aligned_cols=34 Identities=29% Similarity=0.225 Sum_probs=29.0
Q ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcC
Q 025895 193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI 227 (246)
Q Consensus 193 ~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~ 227 (246)
.++.+|||+|+ |.+|...++.+...|+ +|+++++
T Consensus 45 ~~~k~VLVTGatGfIGs~Lv~~L~~~G~-~V~~~d~ 79 (442)
T PLN02572 45 SKKKKVMVIGGDGYCGWATALHLSKRGY-EVAIVDN 79 (442)
T ss_pred ccCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEec
Confidence 45578999988 9999999999988999 8998763
No 347
>PRK00364 groES co-chaperonin GroES; Reviewed
Probab=81.57 E-value=3.2 Score=29.58 Aligned_cols=25 Identities=36% Similarity=0.484 Sum_probs=19.6
Q ss_pred eEEEEEEcCCCCC---------ccCCCCEEEeeC
Q 025895 71 AAGIVESVGEGVT---------EVQPGDHVIPCY 95 (246)
Q Consensus 71 ~vG~V~~vG~~~~---------~~~~Gd~V~~~~ 95 (246)
..|+|+++|++.. .+++||+|+...
T Consensus 36 ~~G~VvaVG~G~~~~~G~~~~~~vk~GD~Vlf~~ 69 (95)
T PRK00364 36 QEGEVVAVGPGRRLDNGERVPLDVKVGDKVLFGK 69 (95)
T ss_pred ceEEEEEECCCeECCCCCEeecccCCCCEEEEcC
Confidence 3699999999642 389999998653
No 348
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=81.50 E-value=3 Score=37.37 Aligned_cols=34 Identities=29% Similarity=0.411 Sum_probs=30.9
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (246)
Q Consensus 195 ~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~ 228 (246)
..+|+|+|+|++|..++..+...|..+++.+|..
T Consensus 41 ~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 41 NARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 4689999999999999999999999899998776
No 349
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=81.47 E-value=2.3 Score=35.70 Aligned_cols=35 Identities=34% Similarity=0.495 Sum_probs=30.8
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (246)
Q Consensus 195 ~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~ 229 (246)
...|+|+|.|++|.+++..+-+.|+.++..+|-.+
T Consensus 30 ~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~ 64 (263)
T COG1179 30 QAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDD 64 (263)
T ss_pred hCcEEEEecCchhHHHHHHHHHcCCCeEEEEeccc
Confidence 46799999999999999999999998888887554
No 350
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=81.37 E-value=3.5 Score=36.49 Aligned_cols=39 Identities=15% Similarity=0.089 Sum_probs=34.3
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 025895 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK 231 (246)
Q Consensus 193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~ 231 (246)
-.+.+|||+|+|-+|.+++..+...|+.+++++.++.++
T Consensus 172 l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~ 210 (338)
T PRK00676 172 SKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLT 210 (338)
T ss_pred ccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccc
Confidence 356899999999999999999999998789999888654
No 351
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=81.28 E-value=3.4 Score=34.53 Aligned_cols=34 Identities=41% Similarity=0.523 Sum_probs=30.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (246)
Q Consensus 196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~ 229 (246)
.+|+|+|.|++|..++..+-..|..+++.+|...
T Consensus 12 ~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 12 AHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 5799999999999999999999999999987654
No 352
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=81.16 E-value=2.7 Score=42.66 Aligned_cols=34 Identities=29% Similarity=0.316 Sum_probs=30.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (246)
Q Consensus 194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~ 228 (246)
.+.+|+|+|+|+-|+.|+..+...|+ +|++++..
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~-~VTV~Ek~ 569 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGH-PVTVFEKK 569 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-eEEEEecc
Confidence 45789999999999999999999999 89888765
No 353
>PLN02565 cysteine synthase
Probab=81.15 E-value=6.5 Score=34.52 Aligned_cols=56 Identities=18% Similarity=0.183 Sum_probs=41.3
Q ss_pred hhCCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEc--CChhHHHHHhhcCCCcc
Q 025895 188 NTAKVEPGSIVAVF-GLGTVGLAVAEGAKAAGASRVIGID--IDPKKFDRGMSCVSSSK 243 (246)
Q Consensus 188 ~~~~~~~~~~VlI~-Gag~~G~~ai~~a~~~G~~~vi~~~--~~~~~~~~~~~lg~~~~ 243 (246)
+...+.+|.+.+|. ..|..|++.+..++.+|+.-++++. .++.|++.++.+|+.+.
T Consensus 59 ~~g~~~~g~~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~ 117 (322)
T PLN02565 59 EKGLIKPGESVLIEPTSGNTGIGLAFMAAAKGYKLIITMPASMSLERRIILLAFGAELV 117 (322)
T ss_pred HcCCCCCCCcEEEEECCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEE
Confidence 34445777665665 4599999999999999994444443 34579999999999853
No 354
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=81.11 E-value=3.4 Score=37.90 Aligned_cols=35 Identities=29% Similarity=0.237 Sum_probs=30.1
Q ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895 193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID 228 (246)
Q Consensus 193 ~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~ 228 (246)
+++.+|||+|+ |.+|...+..+...|. +|+++++.
T Consensus 118 ~~~mkILVTGatGFIGs~Lv~~Ll~~G~-~V~~ldr~ 153 (436)
T PLN02166 118 RKRLRIVVTGGAGFVGSHLVDKLIGRGD-EVIVIDNF 153 (436)
T ss_pred cCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 34568999998 9999999999999998 89999864
No 355
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=81.09 E-value=3.3 Score=36.89 Aligned_cols=35 Identities=31% Similarity=0.341 Sum_probs=31.3
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (246)
Q Consensus 195 ~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~ 229 (246)
..+|+|+|+|++|..++..+-..|..+++.+|...
T Consensus 28 ~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 28 DAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 36899999999999999999999999999987764
No 356
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=81.06 E-value=3.4 Score=37.21 Aligned_cols=36 Identities=22% Similarity=0.218 Sum_probs=32.2
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (246)
Q Consensus 193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~ 229 (246)
-.+++|.|+|.|.+|...++.++.+|+ +|++.+...
T Consensus 114 l~gktvGIIG~G~IG~~va~~l~a~G~-~V~~~Dp~~ 149 (381)
T PRK00257 114 LAERTYGVVGAGHVGGRLVRVLRGLGW-KVLVCDPPR 149 (381)
T ss_pred cCcCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCcc
Confidence 467899999999999999999999999 999998643
No 357
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=81.00 E-value=1.9 Score=31.66 Aligned_cols=36 Identities=11% Similarity=0.351 Sum_probs=30.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHH
Q 025895 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKF 232 (246)
Q Consensus 196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~ 232 (246)
++|||.|.|.++.-+++.++.+|+ +++++-.++++.
T Consensus 3 kkvLIanrGeia~r~~ra~r~~Gi-~tv~v~s~~d~~ 38 (110)
T PF00289_consen 3 KKVLIANRGEIAVRIIRALRELGI-ETVAVNSNPDTV 38 (110)
T ss_dssp SEEEESS-HHHHHHHHHHHHHTTS-EEEEEEEGGGTT
T ss_pred CEEEEECCCHHHHHHHHHHHHhCC-cceeccCchhcc
Confidence 589999999999999999999999 777776777654
No 358
>cd00320 cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts. It forms heptameric rings with a dome-like structure, forming a lid to the large cavity of the tetradecameric cpn60 cylinder and thereby tightly regulating release and binding of proteins to the cpn60 surface.
Probab=80.92 E-value=3.9 Score=29.02 Aligned_cols=25 Identities=36% Similarity=0.429 Sum_probs=19.9
Q ss_pred eEEEEEEcCCCC---------CccCCCCEEEeeC
Q 025895 71 AAGIVESVGEGV---------TEVQPGDHVIPCY 95 (246)
Q Consensus 71 ~vG~V~~vG~~~---------~~~~~Gd~V~~~~ 95 (246)
..|+|+++|++. ..+++||+|+...
T Consensus 35 ~~g~VvAVG~g~~~~~g~~~~~~vk~GD~Vl~~~ 68 (93)
T cd00320 35 QEGKVVAVGPGRRNENGERVPLSVKVGDKVLFPK 68 (93)
T ss_pred eEEEEEEECCCeECCCCCCccccccCCCEEEECC
Confidence 469999999973 2489999998553
No 359
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=80.83 E-value=3.3 Score=41.81 Aligned_cols=35 Identities=26% Similarity=0.273 Sum_probs=31.7
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (246)
Q Consensus 193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~ 228 (246)
..+++|+|+|+|+.|+.++..+...|+ +|++++..
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh-~Vtv~E~~ 415 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGH-NVTAIDGL 415 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCC-eEEEEccc
Confidence 467899999999999999999999999 99999864
No 360
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=80.63 E-value=3.8 Score=36.89 Aligned_cols=35 Identities=23% Similarity=0.327 Sum_probs=31.8
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (246)
Q Consensus 193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~ 228 (246)
-.+++|.|+|.|.+|...++.++.+|+ +|++.+..
T Consensus 114 L~gktvGIIG~G~IG~~vA~~l~a~G~-~V~~~dp~ 148 (378)
T PRK15438 114 LHDRTVGIVGVGNVGRRLQARLEALGI-KTLLCDPP 148 (378)
T ss_pred cCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCc
Confidence 367899999999999999999999999 99999753
No 361
>PRK12831 putative oxidoreductase; Provisional
Probab=80.59 E-value=4.9 Score=37.15 Aligned_cols=36 Identities=33% Similarity=0.336 Sum_probs=31.0
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (246)
Q Consensus 192 ~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~ 228 (246)
...+++|+|+|+|.+|.-++..+..+|+ +|..+.+.
T Consensus 278 ~~~gk~VvVIGgG~va~d~A~~l~r~Ga-~Vtlv~r~ 313 (464)
T PRK12831 278 IKVGKKVAVVGGGNVAMDAARTALRLGA-EVHIVYRR 313 (464)
T ss_pred ccCCCeEEEECCcHHHHHHHHHHHHcCC-EEEEEeec
Confidence 4578999999999999999999999999 57777653
No 362
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=80.59 E-value=4.5 Score=32.66 Aligned_cols=47 Identities=21% Similarity=0.144 Sum_probs=33.5
Q ss_pred hhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS 237 (246)
Q Consensus 188 ~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~ 237 (246)
+.....++.+||-+|.|. |..++.+++. |+ +|+++|.+++-++.+++
T Consensus 24 ~~l~~~~~~~vLDiGcG~-G~~a~~La~~-g~-~V~gvD~S~~~i~~a~~ 70 (197)
T PRK11207 24 EAVKVVKPGKTLDLGCGN-GRNSLYLAAN-GF-DVTAWDKNPMSIANLER 70 (197)
T ss_pred HhcccCCCCcEEEECCCC-CHHHHHHHHC-CC-EEEEEeCCHHHHHHHHH
Confidence 344455678898888753 5666777764 77 99999999986665543
No 363
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=80.53 E-value=8.9 Score=33.11 Aligned_cols=56 Identities=16% Similarity=0.148 Sum_probs=41.7
Q ss_pred hhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC--ChhHHHHHhhcCCCcc
Q 025895 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI--DPKKFDRGMSCVSSSK 243 (246)
Q Consensus 188 ~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~--~~~~~~~~~~lg~~~~ 243 (246)
......++++|+-...|..|++....|+.+|.+-++.+.. ++.|++.++.+|+++.
T Consensus 51 ~~g~~~~g~~vv~aSsGN~g~alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~GA~v~ 108 (299)
T TIGR01136 51 KRGLLKPGDTIIEATSGNTGIALAMVAAAKGYKLILTMPETMSLERRKLLRAYGAELI 108 (299)
T ss_pred HcCCCCCCCEEEEeCCChHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEE
Confidence 3344566676654456999999999999999965666654 3578899999999854
No 364
>PTZ00188 adrenodoxin reductase; Provisional
Probab=80.52 E-value=3.9 Score=38.17 Aligned_cols=36 Identities=19% Similarity=0.147 Sum_probs=29.1
Q ss_pred CCCEEEEECCCHHHHHHHH-HHHHcCCCeEEEEcCChh
Q 025895 194 PGSIVAVFGLGTVGLAVAE-GAKAAGASRVIGIDIDPK 230 (246)
Q Consensus 194 ~~~~VlI~Gag~~G~~ai~-~a~~~G~~~vi~~~~~~~ 230 (246)
...+|+|+|+|+.|+.++. +++..|. .|.++++.+.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~-~VtlfEk~p~ 74 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERV-KVDIFEKLPN 74 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCC-eEEEEecCCC
Confidence 4578999999999999877 6777788 7888877653
No 365
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=80.36 E-value=4.1 Score=39.86 Aligned_cols=39 Identities=36% Similarity=0.490 Sum_probs=34.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG 235 (246)
Q Consensus 196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~ 235 (246)
.+|.|+|+|.+|...++++-..|+ +|+.+|.+++.++..
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~ 352 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGV-PVIMKDINQKALDLG 352 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCC-eEEEEeCCHHHHHHH
Confidence 579999999999998888888899 999999999887643
No 366
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=80.32 E-value=5.3 Score=36.69 Aligned_cols=36 Identities=31% Similarity=0.281 Sum_probs=30.7
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (246)
Q Consensus 192 ~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~ 228 (246)
...+++|+|+|+|.+|+-++..+..+|. +|.++.+.
T Consensus 269 ~~~gk~VvVIGgG~~a~d~A~~l~~~G~-~Vtlv~~~ 304 (449)
T TIGR01316 269 VYAGKSVVVIGGGNTAVDSARTALRLGA-EVHCLYRR 304 (449)
T ss_pred ccCCCeEEEECCCHHHHHHHHHHHHcCC-EEEEEeec
Confidence 3467899999999999999999999999 67777654
No 367
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=80.31 E-value=2.7 Score=38.68 Aligned_cols=34 Identities=29% Similarity=0.295 Sum_probs=29.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 025895 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 230 (246)
Q Consensus 196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~ 230 (246)
-.|+|+|+|+.|.+++..+...|. +|..++....
T Consensus 40 ~DViIVGaGPAG~~aA~~LA~~G~-~VlllEr~~~ 73 (450)
T PLN00093 40 LRVAVIGGGPAGACAAETLAKGGI-ETFLIERKLD 73 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCC
Confidence 469999999999999988888999 8999987653
No 368
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=80.14 E-value=3.5 Score=39.89 Aligned_cols=39 Identities=23% Similarity=0.388 Sum_probs=31.9
Q ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHc-CCCeEEEEcCChhH
Q 025895 192 VEPGSIVAVFGL-GTVGLAVAEGAKAA-GASRVIGIDIDPKK 231 (246)
Q Consensus 192 ~~~~~~VlI~Ga-g~~G~~ai~~a~~~-G~~~vi~~~~~~~~ 231 (246)
.+.+.+|||+|+ |.+|...++.+... |. +|+++++.+.+
T Consensus 312 ~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~-~V~~l~r~~~~ 352 (660)
T PRK08125 312 AKRRTRVLILGVNGFIGNHLTERLLRDDNY-EVYGLDIGSDA 352 (660)
T ss_pred hhcCCEEEEECCCchHHHHHHHHHHhCCCc-EEEEEeCCchh
Confidence 466789999998 99999999888765 67 89999876643
No 369
>PRK08638 threonine dehydratase; Validated
Probab=79.99 E-value=6.6 Score=34.65 Aligned_cols=48 Identities=13% Similarity=0.007 Sum_probs=37.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC--ChhHHHHHhhcCCCcc
Q 025895 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI--DPKKFDRGMSCVSSSK 243 (246)
Q Consensus 196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~--~~~~~~~~~~lg~~~~ 243 (246)
+.|+..++|..|++.+..++..|.+-++++.. ++.|++.++.+||++.
T Consensus 76 ~~vv~~SsGN~g~alA~~aa~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~ 125 (333)
T PRK08638 76 KGVVACSAGNHAQGVALSCALLGIDGKVVMPKGAPKSKVAATCGYGAEVV 125 (333)
T ss_pred CeEEEeCCcHHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHcCCEEE
Confidence 45655577999999999999999965565544 3468889999999854
No 370
>PRK08198 threonine dehydratase; Provisional
Probab=79.79 E-value=6.9 Score=35.38 Aligned_cols=50 Identities=18% Similarity=0.024 Sum_probs=38.9
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC--ChhHHHHHhhcCCCcc
Q 025895 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI--DPKKFDRGMSCVSSSK 243 (246)
Q Consensus 194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~--~~~~~~~~~~lg~~~~ 243 (246)
..+.|+..++|..|++.+..|+.+|..-++++.. +..|.+.++.+||++.
T Consensus 69 ~~~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vi 120 (404)
T PRK08198 69 RARGVVAASAGNHAQGVAYAASLLGIKATIVMPETAPLSKVKATRSYGAEVV 120 (404)
T ss_pred cCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEE
Confidence 3456666677999999999999999966666654 3468888999999854
No 371
>PLN02306 hydroxypyruvate reductase
Probab=79.75 E-value=3.7 Score=37.06 Aligned_cols=35 Identities=29% Similarity=0.323 Sum_probs=31.0
Q ss_pred CCCEEEEECCCHHHHHHHHHHH-HcCCCeEEEEcCCh
Q 025895 194 PGSIVAVFGLGTVGLAVAEGAK-AAGASRVIGIDIDP 229 (246)
Q Consensus 194 ~~~~VlI~Gag~~G~~ai~~a~-~~G~~~vi~~~~~~ 229 (246)
.|++|.|+|.|.+|...++.++ .+|+ +|+++++..
T Consensus 164 ~gktvGIiG~G~IG~~vA~~l~~~fGm-~V~~~d~~~ 199 (386)
T PLN02306 164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ 199 (386)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCC-EEEEECCCC
Confidence 5789999999999999999974 8999 999998765
No 372
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=79.69 E-value=3.4 Score=40.59 Aligned_cols=34 Identities=32% Similarity=0.380 Sum_probs=30.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (246)
Q Consensus 194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~ 228 (246)
.+.+|+|+|+|+.|+.++..+...|+ +|++++..
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~-~V~v~e~~ 463 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGY-DVTVFEAL 463 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCC-eEEEEecC
Confidence 46789999999999999999999999 88888753
No 373
>PTZ00414 10 kDa heat shock protein; Provisional
Probab=79.66 E-value=5 Score=28.93 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=19.0
Q ss_pred EEEEEEcCCCCC----ccCCCCEEEee
Q 025895 72 AGIVESVGEGVT----EVQPGDHVIPC 94 (246)
Q Consensus 72 vG~V~~vG~~~~----~~~~Gd~V~~~ 94 (246)
-|+|+++|++.. .+++||+|+..
T Consensus 46 ~g~VvAVG~G~~~~~~~Vk~GD~Vl~~ 72 (100)
T PTZ00414 46 EGTVVAVAAATKDWTPTVKVGDTVLLP 72 (100)
T ss_pred eeEEEEECCCCccccceecCCCEEEEc
Confidence 599999999854 38999999854
No 374
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=79.37 E-value=4.1 Score=33.10 Aligned_cols=33 Identities=24% Similarity=0.404 Sum_probs=29.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (246)
Q Consensus 196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~ 228 (246)
.+|+|+|.|++|...+..+-..|.++++.+|..
T Consensus 20 s~VlviG~gglGsevak~L~~~GVg~i~lvD~d 52 (198)
T cd01485 20 AKVLIIGAGALGAEIAKNLVLAGIDSITIVDHR 52 (198)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 689999999999999999999999889888755
No 375
>PRK00811 spermidine synthase; Provisional
Probab=79.09 E-value=4.9 Score=34.55 Aligned_cols=44 Identities=18% Similarity=0.224 Sum_probs=34.1
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhc
Q 025895 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSC 238 (246)
Q Consensus 194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~l 238 (246)
..++||++|.|. |..+..+++..+..+|++++.+++-.+.+++.
T Consensus 76 ~p~~VL~iG~G~-G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~ 119 (283)
T PRK00811 76 NPKRVLIIGGGD-GGTLREVLKHPSVEKITLVEIDERVVEVCRKY 119 (283)
T ss_pred CCCEEEEEecCc-hHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHH
Confidence 457899998754 55566667776777999999999988888763
No 376
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=79.06 E-value=3.7 Score=36.90 Aligned_cols=39 Identities=31% Similarity=0.315 Sum_probs=27.8
Q ss_pred CCCCCCCEEEEECCCHHHHHHH-HHHHHcCCCeEEEEcCC
Q 025895 190 AKVEPGSIVAVFGLGTVGLAVA-EGAKAAGASRVIGIDID 228 (246)
Q Consensus 190 ~~~~~~~~VlI~Gag~~G~~ai-~~a~~~G~~~vi~~~~~ 228 (246)
....+...|+|+|+|.+|++++ ++++..|..+|.++++.
T Consensus 25 ~~~~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~ 64 (407)
T TIGR01373 25 PEPKPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKG 64 (407)
T ss_pred CCCCccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcc
Confidence 3344455789999999998855 56655585478888765
No 377
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=79.04 E-value=4.3 Score=32.93 Aligned_cols=34 Identities=18% Similarity=0.292 Sum_probs=30.3
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (246)
Q Consensus 195 ~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~ 228 (246)
..+|+|.|+|++|.-.+..+-.+|.+++..+|..
T Consensus 21 ~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d 54 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR 54 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 3689999999999999999999999889988755
No 378
>PLN02852 ferredoxin-NADP+ reductase
Probab=78.93 E-value=4 Score=38.06 Aligned_cols=37 Identities=32% Similarity=0.323 Sum_probs=30.2
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEcCChh
Q 025895 193 EPGSIVAVFGLGTVGLAVAEGAKA--AGASRVIGIDIDPK 230 (246)
Q Consensus 193 ~~~~~VlI~Gag~~G~~ai~~a~~--~G~~~vi~~~~~~~ 230 (246)
..+.+|+|+|+|+-|+.++..+.. .|+ +|.++++.+.
T Consensus 24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~g~-~Vtv~E~~p~ 62 (491)
T PLN02852 24 SEPLHVCVVGSGPAGFYTADKLLKAHDGA-RVDIIERLPT 62 (491)
T ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCC-eEEEEecCCC
Confidence 345789999999999999987765 688 8999887763
No 379
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=78.87 E-value=3.8 Score=39.34 Aligned_cols=35 Identities=26% Similarity=0.283 Sum_probs=31.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (246)
Q Consensus 194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~ 228 (246)
...+|||+|+|++|-.+++.+-..|.++++.+|..
T Consensus 337 ~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D 371 (664)
T TIGR01381 337 SQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNG 371 (664)
T ss_pred hcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 35789999999999999999999999999988754
No 380
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=78.86 E-value=12 Score=32.66 Aligned_cols=73 Identities=26% Similarity=0.385 Sum_probs=41.7
Q ss_pred CceEEcCCCCCchhhhhccccchhhhhhhhhhC-CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHh
Q 025895 158 VSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTA-KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM 236 (246)
Q Consensus 158 ~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~-~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~ 236 (246)
...+++.+++.| ..+....|.+. +.... ..+++.+||=+|.| .|.+++..+ .+|+.+|+++|..+-..+.++
T Consensus 130 ~~~i~lDPGlAF----GTG~HpTT~lc-L~~Le~~~~~g~~vlDvGcG-SGILaIAa~-kLGA~~v~g~DiDp~AV~aa~ 202 (300)
T COG2264 130 ELNIELDPGLAF----GTGTHPTTSLC-LEALEKLLKKGKTVLDVGCG-SGILAIAAA-KLGAKKVVGVDIDPQAVEAAR 202 (300)
T ss_pred ceEEEEcccccc----CCCCChhHHHH-HHHHHHhhcCCCEEEEecCC-hhHHHHHHH-HcCCceEEEecCCHHHHHHHH
Confidence 456666555533 12223333332 22222 25688888877763 355555544 467779999999987665554
Q ss_pred h
Q 025895 237 S 237 (246)
Q Consensus 237 ~ 237 (246)
+
T Consensus 203 e 203 (300)
T COG2264 203 E 203 (300)
T ss_pred H
Confidence 3
No 381
>PLN02970 serine racemase
Probab=78.73 E-value=7.9 Score=34.01 Aligned_cols=48 Identities=21% Similarity=0.092 Sum_probs=36.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEc--CChhHHHHHhhcCCCcc
Q 025895 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGID--IDPKKFDRGMSCVSSSK 243 (246)
Q Consensus 196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~--~~~~~~~~~~~lg~~~~ 243 (246)
+.|+...+|..|++.+..++.+|+.-++.+. .+++|.+.++.+|+++.
T Consensus 76 ~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~Vi 125 (328)
T PLN02970 76 KGVVTHSSGNHAAALALAAKLRGIPAYIVVPKNAPACKVDAVIRYGGIIT 125 (328)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhcCCEEE
Confidence 4455556799999999999999995455553 35678889999999854
No 382
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=78.66 E-value=6.1 Score=35.84 Aligned_cols=49 Identities=27% Similarity=0.308 Sum_probs=36.7
Q ss_pred hhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCC--eEEEEcCC
Q 025895 180 PTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGAS--RVIGIDID 228 (246)
Q Consensus 180 ~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~--~vi~~~~~ 228 (246)
+..++++.-...--...+|++.|+|.-|.+.+.+.+.+|++ +++++|+.
T Consensus 184 A~llnalk~~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~ 234 (432)
T COG0281 184 AALLNALKLTGKKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRK 234 (432)
T ss_pred HHHHHHHHHhCCCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecC
Confidence 33344443333334556788889999999999999999996 89999876
No 383
>PLN02477 glutamate dehydrogenase
Probab=78.61 E-value=4.4 Score=36.89 Aligned_cols=34 Identities=26% Similarity=0.537 Sum_probs=29.5
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE-cCC
Q 025895 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGI-DID 228 (246)
Q Consensus 194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~-~~~ 228 (246)
.|.+|+|.|-|.+|..+++++...|+ +|+++ |.+
T Consensus 205 ~g~~VaIqGfGnVG~~~A~~L~e~Ga-kVVaVsD~~ 239 (410)
T PLN02477 205 AGQTFVIQGFGNVGSWAAQLIHEKGG-KIVAVSDIT 239 (410)
T ss_pred cCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEECCC
Confidence 57899999999999999999999999 88855 443
No 384
>PRK14533 groES co-chaperonin GroES; Provisional
Probab=78.56 E-value=5.9 Score=28.03 Aligned_cols=24 Identities=29% Similarity=0.320 Sum_probs=19.0
Q ss_pred EEEEEEcCCCCC----ccCCCCEEEeeC
Q 025895 72 AGIVESVGEGVT----EVQPGDHVIPCY 95 (246)
Q Consensus 72 vG~V~~vG~~~~----~~~~Gd~V~~~~ 95 (246)
.|+|+++|++.. .+++||+|+...
T Consensus 37 ~G~VvavG~g~~~~~~~Vk~GD~Vl~~~ 64 (91)
T PRK14533 37 KAEVVAVGKLDDEEDFDIKVGDKVIFSK 64 (91)
T ss_pred eEEEEEECCCCccccccccCCCEEEEcc
Confidence 599999997642 389999998553
No 385
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=78.56 E-value=7.5 Score=33.97 Aligned_cols=51 Identities=20% Similarity=0.158 Sum_probs=39.1
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC--ChhHHHHHhhcCCCcc
Q 025895 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI--DPKKFDRGMSCVSSSK 243 (246)
Q Consensus 193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~--~~~~~~~~~~lg~~~~ 243 (246)
.++++|+..+.|..|.+.+.+++.+|+.-++++.. ++.|.+.++.+||++.
T Consensus 49 ~~~~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~l~~~GA~v~ 101 (316)
T cd06448 49 NECVHVVCSSGGNAGLAAAYAARKLGVPCTIVVPESTKPRVVEKLRDEGATVV 101 (316)
T ss_pred ccCCeEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEE
Confidence 34566666677999999999999999955555543 4578899999999853
No 386
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=78.49 E-value=6 Score=34.93 Aligned_cols=46 Identities=24% Similarity=0.268 Sum_probs=34.8
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC-hhHHHHHhhcCC
Q 025895 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID-PKKFDRGMSCVS 240 (246)
Q Consensus 194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~-~~~~~~~~~lg~ 240 (246)
.+++|.|+|.|.+|.+.++-++..|. +|++..+. +...+.+++.|.
T Consensus 16 ~gktIgIIG~GsmG~AlA~~L~~sG~-~Vvv~~r~~~~s~~~A~~~G~ 62 (330)
T PRK05479 16 KGKKVAIIGYGSQGHAHALNLRDSGV-DVVVGLREGSKSWKKAEADGF 62 (330)
T ss_pred CCCEEEEEeeHHHHHHHHHHHHHCCC-EEEEEECCchhhHHHHHHCCC
Confidence 45789999999999999999999999 77766555 334445555554
No 387
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=78.48 E-value=9.5 Score=31.19 Aligned_cols=51 Identities=22% Similarity=0.312 Sum_probs=37.7
Q ss_pred hhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCChhHHHHHhh
Q 025895 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRGMS 237 (246)
Q Consensus 186 l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~-~~vi~~~~~~~~~~~~~~ 237 (246)
+....+++++++||-+|.| .|..+..+++..+. .+|++++.+++-.+.+++
T Consensus 68 ~~~~l~~~~g~~VLdIG~G-sG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~ 119 (212)
T PRK13942 68 MCELLDLKEGMKVLEIGTG-SGYHAAVVAEIVGKSGKVVTIERIPELAEKAKK 119 (212)
T ss_pred HHHHcCCCCcCEEEEECCc-ccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHH
Confidence 4456678899999998874 35666777777653 389999999987766654
No 388
>PLN02463 lycopene beta cyclase
Probab=78.41 E-value=3.6 Score=37.87 Aligned_cols=33 Identities=42% Similarity=0.509 Sum_probs=27.7
Q ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 025895 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 230 (246)
Q Consensus 197 ~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~ 230 (246)
.|+|+|+|+.|++++..+...|. +|.+++.++.
T Consensus 30 DVvIVGaGpAGLalA~~La~~Gl-~V~liE~~~~ 62 (447)
T PLN02463 30 DLVVVGGGPAGLAVAQQVSEAGL-SVCCIDPSPL 62 (447)
T ss_pred eEEEECCCHHHHHHHHHHHHCCC-eEEEeccCcc
Confidence 68999999999998777777799 8999987653
No 389
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=78.32 E-value=5.2 Score=39.13 Aligned_cols=39 Identities=28% Similarity=0.466 Sum_probs=33.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG 235 (246)
Q Consensus 196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~ 235 (246)
.+|.|+|+|.+|...++.+-..|+ .|+.++.+++.++..
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~ 352 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGT-PIVMKDINQHSLDLG 352 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCC-eEEEEeCCHHHHHHH
Confidence 478999999999988888888899 999999999877654
No 390
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=78.28 E-value=5.7 Score=37.37 Aligned_cols=34 Identities=41% Similarity=0.580 Sum_probs=31.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (246)
Q Consensus 194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~ 228 (246)
.+++|.|+|-|.+|...++.++..|+ +|+++++.
T Consensus 137 ~gktvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~ 170 (525)
T TIGR01327 137 YGKTLGVIGLGRIGSIVAKRAKAFGM-KVLAYDPY 170 (525)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCC
Confidence 56899999999999999999999999 99999874
No 391
>PRK06153 hypothetical protein; Provisional
Probab=78.25 E-value=3.5 Score=37.14 Aligned_cols=35 Identities=23% Similarity=0.315 Sum_probs=30.8
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (246)
Q Consensus 195 ~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~ 229 (246)
+.+|+|+|.|++|..++..+-+.|..+++.+|...
T Consensus 176 ~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~ 210 (393)
T PRK06153 176 GQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDD 210 (393)
T ss_pred hCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCE
Confidence 47899999999999999999999998999887653
No 392
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=78.23 E-value=3.9 Score=32.57 Aligned_cols=38 Identities=26% Similarity=0.251 Sum_probs=27.0
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 025895 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK 231 (246)
Q Consensus 193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~ 231 (246)
-++++|+|+|+|..+.-++..+...|. +|..+.|++.+
T Consensus 165 ~~~k~V~VVG~G~SA~d~a~~l~~~g~-~V~~~~R~~~~ 202 (203)
T PF13738_consen 165 FKGKRVVVVGGGNSAVDIAYALAKAGK-SVTLVTRSPIW 202 (203)
T ss_dssp CTTSEEEEE--SHHHHHHHHHHTTTCS-EEEEEESS---
T ss_pred cCCCcEEEEcChHHHHHHHHHHHhhCC-EEEEEecCCCC
Confidence 456999999999888877777777775 99999888754
No 393
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=78.20 E-value=2.8 Score=40.42 Aligned_cols=34 Identities=24% Similarity=0.306 Sum_probs=27.4
Q ss_pred CEEEEECCCHHHHHHHHHHHH-cCCCeEEEEcCChh
Q 025895 196 SIVAVFGLGTVGLAVAEGAKA-AGASRVIGIDIDPK 230 (246)
Q Consensus 196 ~~VlI~Gag~~G~~ai~~a~~-~G~~~vi~~~~~~~ 230 (246)
-.|+|+|+|+.|++++..+.. .|. +|.++++.+.
T Consensus 33 ~dVlIVGAGPaGL~lA~~Lar~~Gi-~v~IiE~~~~ 67 (634)
T PRK08294 33 VDVLIVGCGPAGLTLAAQLSAFPDI-TTRIVERKPG 67 (634)
T ss_pred CCEEEECCCHHHHHHHHHHhcCCCC-cEEEEEcCCC
Confidence 469999999999987777776 498 8888887653
No 394
>PLN02356 phosphateglycerate kinase
Probab=78.20 E-value=9.7 Score=34.84 Aligned_cols=54 Identities=19% Similarity=0.175 Sum_probs=40.1
Q ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEc--CChhHHHHHhhcCCCcc
Q 025895 190 AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID--IDPKKFDRGMSCVSSSK 243 (246)
Q Consensus 190 ~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~--~~~~~~~~~~~lg~~~~ 243 (246)
...+++.+|+-..+|..|++.+.+++.+|++-++++. .+++|.+.++.+||++.
T Consensus 99 g~~~~~g~VveaSSGN~g~alA~~aa~~G~~~~ivvP~~~s~~K~~~ir~~GAeVi 154 (423)
T PLN02356 99 GQLFPGGVVTEGSAGSTAISLATVAPAYGCKCHVVIPDDVAIEKSQILEALGATVE 154 (423)
T ss_pred CccCCCCEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCCCcHHHHHHHHHcCCEEE
Confidence 3444655544346699999999999999995555554 34679999999999853
No 395
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=78.18 E-value=5.3 Score=39.27 Aligned_cols=39 Identities=31% Similarity=0.536 Sum_probs=33.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG 235 (246)
Q Consensus 196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~ 235 (246)
.+|.|+|+|.+|...++++...|+ .|+..|.+++.++..
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~-~V~l~d~~~~~l~~~ 374 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGL-KTVLKDATPAGLDRG 374 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCC-cEEEecCCHHHHHHH
Confidence 579999999999988888888899 999999999877654
No 396
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=78.04 E-value=2.8 Score=31.57 Aligned_cols=41 Identities=29% Similarity=0.537 Sum_probs=31.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEE-cCChhHHHHHhh
Q 025895 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGI-DIDPKKFDRGMS 237 (246)
Q Consensus 196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~-~~~~~~~~~~~~ 237 (246)
-+|-|+|+|.+|......++..|+ .|..+ .++.++.+++..
T Consensus 11 l~I~iIGaGrVG~~La~aL~~ag~-~v~~v~srs~~sa~~a~~ 52 (127)
T PF10727_consen 11 LKIGIIGAGRVGTALARALARAGH-EVVGVYSRSPASAERAAA 52 (127)
T ss_dssp -EEEEECTSCCCCHHHHHHHHTTS-EEEEESSCHH-HHHHHHC
T ss_pred cEEEEECCCHHHHHHHHHHHHCCC-eEEEEEeCCccccccccc
Confidence 478899999999999999999999 77777 455556666654
No 397
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=77.93 E-value=6.9 Score=32.14 Aligned_cols=50 Identities=28% Similarity=0.470 Sum_probs=34.8
Q ss_pred hhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCChhHHHHHh
Q 025895 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRGM 236 (246)
Q Consensus 186 l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~-~~vi~~~~~~~~~~~~~ 236 (246)
+.+...++++++||-+|+| .|..++.+++..|. .+|+.++..++-.+.++
T Consensus 64 ~l~~L~l~pg~~VLeIGtG-sGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~ 114 (209)
T PF01135_consen 64 MLEALDLKPGDRVLEIGTG-SGYQAALLAHLVGPVGRVVSVERDPELAERAR 114 (209)
T ss_dssp HHHHTTC-TT-EEEEES-T-TSHHHHHHHHHHSTTEEEEEEESBHHHHHHHH
T ss_pred HHHHHhcCCCCEEEEecCC-CcHHHHHHHHhcCccceEEEECccHHHHHHHH
Confidence 4566779999999999874 36777788887774 26899998887555443
No 398
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=77.85 E-value=5.8 Score=37.35 Aligned_cols=35 Identities=40% Similarity=0.555 Sum_probs=31.8
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (246)
Q Consensus 194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~ 229 (246)
.+++|.|+|.|.+|...++.++..|+ +|+++++..
T Consensus 139 ~gktvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~ 173 (526)
T PRK13581 139 YGKTLGIIGLGRIGSEVAKRAKAFGM-KVIAYDPYI 173 (526)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCCC
Confidence 47899999999999999999999999 999998753
No 399
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=77.51 E-value=4.4 Score=36.61 Aligned_cols=35 Identities=26% Similarity=0.266 Sum_probs=30.7
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (246)
Q Consensus 195 ~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~ 229 (246)
..+|+|+|+|++|..++..+-.+|..++..+|...
T Consensus 42 ~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ 76 (392)
T PRK07878 42 NARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDV 76 (392)
T ss_pred cCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence 36899999999999999999999998998887654
No 400
>PRK08605 D-lactate dehydrogenase; Validated
Probab=77.27 E-value=4.9 Score=35.43 Aligned_cols=37 Identities=41% Similarity=0.490 Sum_probs=30.9
Q ss_pred CCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEEcCChhH
Q 025895 194 PGSIVAVFGLGTVGLAVAEGA-KAAGASRVIGIDIDPKK 231 (246)
Q Consensus 194 ~~~~VlI~Gag~~G~~ai~~a-~~~G~~~vi~~~~~~~~ 231 (246)
.|.+|.|+|.|.+|...++.+ +..|. +|++.+++..+
T Consensus 145 ~g~~VgIIG~G~IG~~vA~~L~~~~g~-~V~~~d~~~~~ 182 (332)
T PRK08605 145 KDLKVAVIGTGRIGLAVAKIFAKGYGS-DVVAYDPFPNA 182 (332)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCC-EEEEECCCccH
Confidence 467899999999999888887 67888 89999877643
No 401
>PRK07411 hypothetical protein; Validated
Probab=77.21 E-value=4.6 Score=36.48 Aligned_cols=34 Identities=29% Similarity=0.331 Sum_probs=30.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (246)
Q Consensus 196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~ 229 (246)
.+|+|+|+|++|..+++.+-.+|..+++.+|...
T Consensus 39 ~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ 72 (390)
T PRK07411 39 ASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDV 72 (390)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 6899999999999999999999999999887653
No 402
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=77.05 E-value=9.2 Score=29.17 Aligned_cols=37 Identities=32% Similarity=0.455 Sum_probs=30.7
Q ss_pred EEEEECC-CHHHHHHHHHHHHcCC-CeEEEEcCChhHHH
Q 025895 197 IVAVFGL-GTVGLAVAEGAKAAGA-SRVIGIDIDPKKFD 233 (246)
Q Consensus 197 ~VlI~Ga-g~~G~~ai~~a~~~G~-~~vi~~~~~~~~~~ 233 (246)
+|.|+|+ |.+|...+..+...+. .+++.+|.++++.+
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~ 40 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAE 40 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHH
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccce
Confidence 5788999 9999998888888886 56999999976543
No 403
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=77.03 E-value=8.4 Score=35.36 Aligned_cols=50 Identities=22% Similarity=0.208 Sum_probs=36.9
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh--------hHHHHHhhcCCC
Q 025895 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP--------KKFDRGMSCVSS 241 (246)
Q Consensus 192 ~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~--------~~~~~~~~lg~~ 241 (246)
+..+++|+|+|+|.+|.-++..+...|+++|..+.+.+ ...+.+++.|.+
T Consensus 270 ~~~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~~~~~~~~~~~GV~ 327 (457)
T PRK11749 270 LPVGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPASEEEVEHAKEEGVE 327 (457)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHCCCE
Confidence 34689999999999999988888888986777775532 223455566655
No 404
>PRK07048 serine/threonine dehydratase; Validated
Probab=77.01 E-value=9 Score=33.47 Aligned_cols=48 Identities=19% Similarity=0.121 Sum_probs=36.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC--ChhHHHHHhhcCCCcc
Q 025895 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI--DPKKFDRGMSCVSSSK 243 (246)
Q Consensus 196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~--~~~~~~~~~~lg~~~~ 243 (246)
+.|+..+.|..|++.+..++.+|++-++++.. ++.|++.++.+|+++.
T Consensus 73 ~~vv~aSsGN~g~alA~~a~~~G~~~~vvvp~~~~~~k~~~~~~~GAeV~ 122 (321)
T PRK07048 73 AGVVTFSSGNHAQAIALSARLLGIPATIVMPQDAPAAKVAATRGYGGEVV 122 (321)
T ss_pred CcEEEeCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEE
Confidence 34555577999999999999999955555543 3468889999999853
No 405
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=76.82 E-value=4.5 Score=35.72 Aligned_cols=47 Identities=21% Similarity=0.312 Sum_probs=39.9
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCC
Q 025895 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVS 240 (246)
Q Consensus 193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~ 240 (246)
-.+++|.|+|.|.+|+..++=++..|. .+.-..++..+.+...+.++
T Consensus 160 ~~gK~vgilG~G~IG~~ia~rL~~Fg~-~i~y~~r~~~~~~~~~~~~~ 206 (336)
T KOG0069|consen 160 LEGKTVGILGLGRIGKAIAKRLKPFGC-VILYHSRTQLPPEEAYEYYA 206 (336)
T ss_pred ccCCEEEEecCcHHHHHHHHhhhhccc-eeeeecccCCchhhHHHhcc
Confidence 467899999999999999999999995 78888888877777766666
No 406
>PLN02576 protoporphyrinogen oxidase
Probab=76.79 E-value=3.9 Score=37.83 Aligned_cols=33 Identities=33% Similarity=0.397 Sum_probs=28.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCh
Q 025895 196 SIVAVFGLGTVGLAVAEGAKAA-GASRVIGIDIDP 229 (246)
Q Consensus 196 ~~VlI~Gag~~G~~ai~~a~~~-G~~~vi~~~~~~ 229 (246)
.+|+|+|+|..|+.++..++.. |. +|.++..++
T Consensus 13 ~~v~IIGaGisGL~aA~~L~~~~g~-~v~vlEa~~ 46 (496)
T PLN02576 13 KDVAVVGAGVSGLAAAYALASKHGV-NVLVTEARD 46 (496)
T ss_pred CCEEEECcCHHHHHHHHHHHHhcCC-CEEEEecCC
Confidence 3689999999999999888888 88 888887665
No 407
>PRK09414 glutamate dehydrogenase; Provisional
Probab=76.78 E-value=8.7 Score=35.36 Aligned_cols=32 Identities=34% Similarity=0.422 Sum_probs=29.4
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Q 025895 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGI 225 (246)
Q Consensus 193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~ 225 (246)
-.+.+|+|.|-|.+|..+++++...|+ +|+++
T Consensus 230 l~g~rVaIqGfGnVG~~~A~~L~~~Ga-kVVav 261 (445)
T PRK09414 230 FEGKRVVVSGSGNVAIYAIEKAQQLGA-KVVTC 261 (445)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEE
Confidence 367899999999999999999999999 88888
No 408
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=76.61 E-value=4.1 Score=34.32 Aligned_cols=32 Identities=34% Similarity=0.488 Sum_probs=28.9
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Q 025895 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGI 225 (246)
Q Consensus 193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~ 225 (246)
-.+.+++|.|.|.+|..+++++...|+ +++++
T Consensus 30 l~g~~v~IqGfG~VG~~~a~~l~~~Ga-~vv~v 61 (244)
T PF00208_consen 30 LEGKRVAIQGFGNVGSHAARFLAELGA-KVVAV 61 (244)
T ss_dssp STTCEEEEEESSHHHHHHHHHHHHTTE-EEEEE
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEE
Confidence 367899999999999999999999999 78777
No 409
>PRK06608 threonine dehydratase; Provisional
Probab=76.57 E-value=8.7 Score=33.97 Aligned_cols=47 Identities=19% Similarity=0.180 Sum_probs=36.7
Q ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEcC--ChhHHHHHhhcCCCcc
Q 025895 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDI--DPKKFDRGMSCVSSSK 243 (246)
Q Consensus 197 ~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~--~~~~~~~~~~lg~~~~ 243 (246)
+|+-...|..|++.+..++.+|+.-++.+.. +++|++.++.+|+++.
T Consensus 74 ~vv~~SsGN~g~alA~~a~~~G~~~~vv~p~~~~~~k~~~l~~~GA~V~ 122 (338)
T PRK06608 74 KIVAYSTGNHGQAVAYASKLFGIKTRIYLPLNTSKVKQQAALYYGGEVI 122 (338)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEE
Confidence 4443345999999999999999966666654 5678999999999854
No 410
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=76.54 E-value=11 Score=34.41 Aligned_cols=55 Identities=18% Similarity=0.202 Sum_probs=41.6
Q ss_pred hhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC--ChhHHHHHhhcCCCc
Q 025895 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI--DPKKFDRGMSCVSSS 242 (246)
Q Consensus 188 ~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~--~~~~~~~~~~lg~~~ 242 (246)
....+.++++|+-...|..|.+.+..++.+|++-++++.. +++|.+.++.+||++
T Consensus 55 ~~g~~~~g~~vv~~ssGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v 111 (454)
T TIGR01137 55 ASGRLKPGDTIIEPTSGNTGIGLALVAAIKGYKCIIVLPEKMSNEKVDVLKALGAEI 111 (454)
T ss_pred HcCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCeEEEEeCCCcCHHHHHHHHHCCCEE
Confidence 3444567777666666999999999999999954444432 457999999999985
No 411
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=76.26 E-value=4.4 Score=33.64 Aligned_cols=32 Identities=34% Similarity=0.363 Sum_probs=23.6
Q ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (246)
Q Consensus 197 ~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~ 229 (246)
.|+|.|+|+.|+.++..+...|. +|.+++++.
T Consensus 19 DV~IVGaGpaGl~aA~~La~~g~-kV~v~E~~~ 50 (230)
T PF01946_consen 19 DVAIVGAGPAGLTAAYYLAKAGL-KVAVIERKL 50 (230)
T ss_dssp SEEEE--SHHHHHHHHHHHHHTS--EEEEESSS
T ss_pred CEEEECCChhHHHHHHHHHHCCC-eEEEEecCC
Confidence 47888999999998887777799 888887654
No 412
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=75.77 E-value=4.7 Score=41.04 Aligned_cols=34 Identities=29% Similarity=0.256 Sum_probs=29.9
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (246)
Q Consensus 194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~ 228 (246)
.+.+|+|+|+|+.|+.++..+...|. +|++++..
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~-~VtV~E~~ 462 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGV-DVTVYEAL 462 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEecC
Confidence 36789999999999999999999999 88888765
No 413
>PLN02712 arogenate dehydrogenase
Probab=75.73 E-value=8 Score=37.58 Aligned_cols=45 Identities=18% Similarity=0.224 Sum_probs=35.8
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCC
Q 025895 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVS 240 (246)
Q Consensus 194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~ 240 (246)
...+|.|+|.|.+|...+..++..|. +|++++++++. +.+.++|+
T Consensus 368 ~~~kIgIIGlG~mG~slA~~L~~~G~-~V~~~dr~~~~-~~a~~~Gv 412 (667)
T PLN02712 368 SKLKIAIVGFGNFGQFLAKTMVKQGH-TVLAYSRSDYS-DEAQKLGV 412 (667)
T ss_pred CCCEEEEEecCHHHHHHHHHHHHCcC-EEEEEECChHH-HHHHHcCC
Confidence 45689999999999998888888898 89999988654 44555554
No 414
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=75.72 E-value=11 Score=30.31 Aligned_cols=49 Identities=27% Similarity=0.308 Sum_probs=36.6
Q ss_pred hhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS 237 (246)
Q Consensus 188 ~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~ 237 (246)
....+++++.++=+|+| .|..++++++.....+|+++++++++.+..+.
T Consensus 28 s~L~~~~g~~l~DIGaG-tGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~ 76 (187)
T COG2242 28 SKLRPRPGDRLWDIGAG-TGSITIEWALAGPSGRVIAIERDEEALELIER 76 (187)
T ss_pred HhhCCCCCCEEEEeCCC-ccHHHHHHHHhCCCceEEEEecCHHHHHHHHH
Confidence 56678898877666874 35667788866655699999999998876643
No 415
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=75.64 E-value=14 Score=31.59 Aligned_cols=51 Identities=20% Similarity=0.167 Sum_probs=38.3
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC--ChhHHHHHhhcCCCc
Q 025895 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI--DPKKFDRGMSCVSSS 242 (246)
Q Consensus 192 ~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~--~~~~~~~~~~lg~~~ 242 (246)
.+++.+|+....|..|++.+.+++.+|..-++.+.. ++.|++.++.+|+++
T Consensus 50 ~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~Ga~v 102 (291)
T cd01561 50 LKPGTTIIEPTSGNTGIGLAMVAAAKGYRFIIVMPETMSEEKRKLLRALGAEV 102 (291)
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCEE
Confidence 335566555445999999999999999955555544 357889999999984
No 416
>PRK06110 hypothetical protein; Provisional
Probab=75.60 E-value=11 Score=33.10 Aligned_cols=45 Identities=18% Similarity=0.084 Sum_probs=35.4
Q ss_pred EEECC-CHHHHHHHHHHHHcCCCeEEEEcC--ChhHHHHHhhcCCCcc
Q 025895 199 AVFGL-GTVGLAVAEGAKAAGASRVIGIDI--DPKKFDRGMSCVSSSK 243 (246)
Q Consensus 199 lI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~--~~~~~~~~~~lg~~~~ 243 (246)
+|... |..|++.+..++.+|.+-++++.. ++.|.+.++.+|+++.
T Consensus 73 vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~ 120 (322)
T PRK06110 73 VISATRGNHGQSVAFAARRHGLAATIVVPHGNSVEKNAAMRALGAELI 120 (322)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEE
Confidence 55554 999999999999999965666653 3568889999999854
No 417
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=75.53 E-value=5.8 Score=34.85 Aligned_cols=35 Identities=17% Similarity=0.317 Sum_probs=30.9
Q ss_pred CCCEEEEECCCHHHHHHHHHHH-HcCCCeEEEEcCCh
Q 025895 194 PGSIVAVFGLGTVGLAVAEGAK-AAGASRVIGIDIDP 229 (246)
Q Consensus 194 ~~~~VlI~Gag~~G~~ai~~a~-~~G~~~vi~~~~~~ 229 (246)
.|++|.|+|-|.+|...++.++ ..|. +|++.++..
T Consensus 144 ~gktvGIiG~G~IG~~va~~l~~~fgm-~V~~~~~~~ 179 (323)
T PRK15409 144 HHKTLGIVGMGRIGMALAQRAHFGFNM-PILYNARRH 179 (323)
T ss_pred CCCEEEEEcccHHHHHHHHHHHhcCCC-EEEEECCCC
Confidence 5689999999999999999998 8999 899887663
No 418
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=75.16 E-value=5 Score=37.48 Aligned_cols=34 Identities=26% Similarity=0.382 Sum_probs=28.7
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (246)
Q Consensus 195 ~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~ 229 (246)
.-.|+|+|+|..|+.|+..|...|+ +|++++..+
T Consensus 61 ~~DVvVVG~G~AGl~AAi~Aa~~Ga-~VivlEK~~ 94 (506)
T PRK06481 61 KYDIVIVGAGGAGMSAAIEAKDAGM-NPVILEKMP 94 (506)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCC
Confidence 4458999999999999988888999 898887654
No 419
>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]
Probab=75.09 E-value=6.5 Score=35.70 Aligned_cols=43 Identities=23% Similarity=0.213 Sum_probs=35.8
Q ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895 192 VEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG 235 (246)
Q Consensus 192 ~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~ 235 (246)
-....+|+|.|+ |.+|+..++.++..|+ .|.++.++.++.+..
T Consensus 76 ~~~~~~VlVvGatG~vG~~iv~~llkrgf-~vra~VRd~~~a~~~ 119 (411)
T KOG1203|consen 76 SKKPTTVLVVGATGKVGRRIVKILLKRGF-SVRALVRDEQKAEDL 119 (411)
T ss_pred CCCCCeEEEecCCCchhHHHHHHHHHCCC-eeeeeccChhhhhhh
Confidence 345578999999 9999999999999999 899888887765443
No 420
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=75.06 E-value=7.6 Score=29.37 Aligned_cols=43 Identities=14% Similarity=0.343 Sum_probs=30.4
Q ss_pred EEEECC-CHHHHHHHHHHHHcC--CCeEEEEcCChh--HH-HHHhhcCCC
Q 025895 198 VAVFGL-GTVGLAVAEGAKAAG--ASRVIGIDIDPK--KF-DRGMSCVSS 241 (246)
Q Consensus 198 VlI~Ga-g~~G~~ai~~a~~~G--~~~vi~~~~~~~--~~-~~~~~lg~~ 241 (246)
|.|+|+ |.+|..++.+.+... + +|+++....+ ++ +.++++.|.
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~~d~f-~v~~Lsa~~n~~~L~~q~~~f~p~ 49 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKHPDKF-EVVALSAGSNIEKLAEQAREFKPK 49 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHCTTTE-EEEEEEESSTHHHHHHHHHHHT-S
T ss_pred CEEEcCCcHHHHHHHHHHHhCCCce-EEEEEEcCCCHHHHHHHHHHhCCC
Confidence 578898 999999999999997 7 7777655433 22 344556665
No 421
>PLN02985 squalene monooxygenase
Probab=75.04 E-value=4.9 Score=37.69 Aligned_cols=34 Identities=32% Similarity=0.341 Sum_probs=28.4
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (246)
Q Consensus 195 ~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~ 229 (246)
.-.|+|+|+|..|++++..+...|. +|.++++..
T Consensus 43 ~~DViIVGAG~aGlalA~aLa~~G~-~V~vlEr~~ 76 (514)
T PLN02985 43 ATDVIIVGAGVGGSALAYALAKDGR-RVHVIERDL 76 (514)
T ss_pred CceEEEECCCHHHHHHHHHHHHcCC-eEEEEECcC
Confidence 3468999999999998877777898 899998764
No 422
>PRK08246 threonine dehydratase; Provisional
Probab=74.85 E-value=14 Score=32.23 Aligned_cols=50 Identities=28% Similarity=0.242 Sum_probs=37.6
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC--ChhHHHHHhhcCCCcc
Q 025895 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI--DPKKFDRGMSCVSSSK 243 (246)
Q Consensus 194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~--~~~~~~~~~~lg~~~~ 243 (246)
++++|+..-.|..|++.+..++..|..-++.+.. ++.|++.++.+|+++.
T Consensus 67 ~~~~vv~aSsGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~ 118 (310)
T PRK08246 67 PAAGVVAASGGNAGLAVAYAAAALGVPATVFVPETAPPAKVARLRALGAEVV 118 (310)
T ss_pred cCCeEEEeCCCHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEE
Confidence 4556655555999999999999999955555532 4568889999999854
No 423
>PLN00011 cysteine synthase
Probab=74.59 E-value=13 Score=32.49 Aligned_cols=56 Identities=14% Similarity=0.109 Sum_probs=41.1
Q ss_pred hhCCCCCC-CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC--hhHHHHHhhcCCCcc
Q 025895 188 NTAKVEPG-SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID--PKKFDRGMSCVSSSK 243 (246)
Q Consensus 188 ~~~~~~~~-~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~--~~~~~~~~~lg~~~~ 243 (246)
+...+.++ ++|+....|..|++.+..++.+|..-++++... +.|++.++.+||++.
T Consensus 61 ~~g~~~~g~~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~ 119 (323)
T PLN00011 61 DKGLITPGKSTLIEATAGNTGIGLACIGAARGYKVILVMPSTMSLERRIILRALGAEVH 119 (323)
T ss_pred HcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Confidence 44556777 455543459999999999999999555555433 468899999999853
No 424
>PLN02852 ferredoxin-NADP+ reductase
Probab=74.54 E-value=6.1 Score=36.89 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=21.6
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc
Q 025895 192 VEPGSIVAVFGLGTVGLAVAEGAKAA 217 (246)
Q Consensus 192 ~~~~~~VlI~Gag~~G~~ai~~a~~~ 217 (246)
+..+++|+|+|+|.+|+-++..+...
T Consensus 163 ~~~gk~VvVIGgGnvAlD~Ar~L~~~ 188 (491)
T PLN02852 163 LKSSDTAVVLGQGNVALDCARILLRP 188 (491)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhC
Confidence 45689999999999999888877665
No 425
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=74.40 E-value=6 Score=35.39 Aligned_cols=34 Identities=32% Similarity=0.452 Sum_probs=29.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 025895 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 230 (246)
Q Consensus 196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~ 230 (246)
.+|+|+|+|..|...+..++.+|+ ++++++.+++
T Consensus 13 ~~ilIiG~g~~~~~~~~a~~~~G~-~v~~~~~~~~ 46 (395)
T PRK09288 13 TRVMLLGSGELGKEVAIEAQRLGV-EVIAVDRYAN 46 (395)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCCC
Confidence 489999999999988999999999 8888877653
No 426
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=73.98 E-value=6.5 Score=36.28 Aligned_cols=37 Identities=22% Similarity=0.328 Sum_probs=29.6
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (246)
Q Consensus 193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~ 229 (246)
+.+.+|+|+|||..|++|++=+...|+..+.++..++
T Consensus 19 ~~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~d 55 (498)
T KOG0685|consen 19 RGNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASD 55 (498)
T ss_pred cCCceEEEECCchHHHHHHHHHHHhCCceEEEEEecc
Confidence 4445899999999999998888888886777775554
No 427
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=73.84 E-value=5.7 Score=34.77 Aligned_cols=36 Identities=33% Similarity=0.406 Sum_probs=30.9
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (246)
Q Consensus 194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~ 229 (246)
.+.-|+|.|+|++|..++.++.+.|++++-.+|-..
T Consensus 73 ~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdq 108 (430)
T KOG2018|consen 73 TNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQ 108 (430)
T ss_pred cCcEEEEEecCchhHHHHHHHHHhcCceEEEechhh
Confidence 446788889999999999999999998888887554
No 428
>PLN02366 spermidine synthase
Probab=73.77 E-value=8.4 Score=33.64 Aligned_cols=45 Identities=22% Similarity=0.173 Sum_probs=34.5
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhc
Q 025895 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSC 238 (246)
Q Consensus 193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~l 238 (246)
...++|||+|.|. |..+..+++.-+..+|++++.+++-.+.+++.
T Consensus 90 ~~pkrVLiIGgG~-G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~ 134 (308)
T PLN02366 90 PNPKKVLVVGGGD-GGVLREIARHSSVEQIDICEIDKMVIDVSKKF 134 (308)
T ss_pred CCCCeEEEEcCCc-cHHHHHHHhCCCCCeEEEEECCHHHHHHHHHh
Confidence 4468999998765 55666777876767899999999877777764
No 429
>PRK07121 hypothetical protein; Validated
Probab=73.56 E-value=5.5 Score=36.94 Aligned_cols=33 Identities=39% Similarity=0.522 Sum_probs=27.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (246)
Q Consensus 196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~ 229 (246)
-.|||+|+|..|+.|+.-|...|+ +|++++...
T Consensus 21 ~DVvVVGaG~AGl~AA~~aae~G~-~VillEK~~ 53 (492)
T PRK07121 21 ADVVVVGFGAAGACAAIEAAAAGA-RVLVLERAA 53 (492)
T ss_pred cCEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCC
Confidence 358899999999988888888899 888887554
No 430
>PTZ00367 squalene epoxidase; Provisional
Probab=73.56 E-value=5.5 Score=37.89 Aligned_cols=33 Identities=21% Similarity=0.281 Sum_probs=29.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (246)
Q Consensus 196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~ 229 (246)
-.|+|+|+|..|++++..+...|. +|.++++..
T Consensus 34 ~dViIVGaGiaGlalA~aLar~G~-~V~VlEr~~ 66 (567)
T PTZ00367 34 YDVIIVGGSIAGPVLAKALSKQGR-KVLMLERDL 66 (567)
T ss_pred ccEEEECCCHHHHHHHHHHHhcCC-EEEEEcccc
Confidence 468999999999998888888999 899998765
No 431
>PRK06046 alanine dehydrogenase; Validated
Probab=73.32 E-value=16 Score=31.98 Aligned_cols=44 Identities=11% Similarity=0.090 Sum_probs=34.9
Q ss_pred CCCCEEEEECCCHHHHHHHHHHH-HcCCCeEEEEcCChhHHHHHh
Q 025895 193 EPGSIVAVFGLGTVGLAVAEGAK-AAGASRVIGIDIDPKKFDRGM 236 (246)
Q Consensus 193 ~~~~~VlI~Gag~~G~~ai~~a~-~~G~~~vi~~~~~~~~~~~~~ 236 (246)
....++.|+|+|..|...+.... ..+++.+.+.++++++.+.+.
T Consensus 127 ~~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~ 171 (326)
T PRK06046 127 KDSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFV 171 (326)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHH
Confidence 44578999999999988777665 568888999999998876544
No 432
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=73.24 E-value=9 Score=37.43 Aligned_cols=39 Identities=28% Similarity=0.391 Sum_probs=32.1
Q ss_pred CEEEEECCCHHHHHHHHHHH-HcCCCeEEEEcCChhHHHHH
Q 025895 196 SIVAVFGLGTVGLAVAEGAK-AAGASRVIGIDIDPKKFDRG 235 (246)
Q Consensus 196 ~~VlI~Gag~~G~~ai~~a~-~~G~~~vi~~~~~~~~~~~~ 235 (246)
.+|.|+|+|.+|...++++- ..|+ .|+.+|.+++.++.+
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~-~V~l~d~~~~~l~~~ 344 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGI-PVRIKDINPQGINNA 344 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHH
Confidence 47999999999988777665 6899 999999999866543
No 433
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=73.20 E-value=8.7 Score=33.06 Aligned_cols=35 Identities=20% Similarity=0.403 Sum_probs=27.1
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHc----CC------CeEEEEcCC
Q 025895 194 PGSIVAVFGLGTVGLAVAEGAKAA----GA------SRVIGIDID 228 (246)
Q Consensus 194 ~~~~VlI~Gag~~G~~ai~~a~~~----G~------~~vi~~~~~ 228 (246)
...+|+++|+|..|...+.+.... |. ++++.+|+.
T Consensus 24 ~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~ 68 (279)
T cd05312 24 SDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSK 68 (279)
T ss_pred hhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCC
Confidence 457889999998887777666655 87 689988775
No 434
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=72.81 E-value=8.8 Score=37.56 Aligned_cols=40 Identities=30% Similarity=0.338 Sum_probs=32.2
Q ss_pred CCEEEEECCCHHHHHHHHHHH-HcCCCeEEEEcCChhHHHHH
Q 025895 195 GSIVAVFGLGTVGLAVAEGAK-AAGASRVIGIDIDPKKFDRG 235 (246)
Q Consensus 195 ~~~VlI~Gag~~G~~ai~~a~-~~G~~~vi~~~~~~~~~~~~ 235 (246)
-++|.|+|+|.+|...++.+- ..|+ .|+..|.+++.++.+
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~G~-~V~l~d~~~~~l~~~ 349 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKAGL-PVRIKDINPQGINHA 349 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHcCC-eEEEEeCCHHHHHHH
Confidence 367999999999987666555 8899 999999998866554
No 435
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=72.79 E-value=6 Score=33.58 Aligned_cols=45 Identities=29% Similarity=0.384 Sum_probs=31.0
Q ss_pred hhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHc----CC------CeEEEEcCC
Q 025895 184 GAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAA----GA------SRVIGIDID 228 (246)
Q Consensus 184 ~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~----G~------~~vi~~~~~ 228 (246)
.++......-.+.+++++|+|..|...+.+.... |. ++++.+|+.
T Consensus 14 ~Al~~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~ 68 (255)
T PF03949_consen 14 NALRVTGKKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSK 68 (255)
T ss_dssp HHHHHHTS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETT
T ss_pred HHHHHhCCCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEecc
Confidence 3343334334567899999998888888777777 88 789999875
No 436
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=72.31 E-value=10 Score=28.70 Aligned_cols=40 Identities=25% Similarity=0.412 Sum_probs=27.7
Q ss_pred hhhhCCCCCCCEEEEECC---CHHHHHHHHHHHHcCCCeEEEEc
Q 025895 186 VWNTAKVEPGSIVAVFGL---GTVGLAVAEGAKAAGASRVIGID 226 (246)
Q Consensus 186 l~~~~~~~~~~~VlI~Ga---g~~G~~ai~~a~~~G~~~vi~~~ 226 (246)
+....+++++|.++++.. .+.-..+++.||.+|+ +||++.
T Consensus 95 ~~~~~~~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~-~vIalT 137 (138)
T PF13580_consen 95 LLALYDIRPGDVLIVISNSGNSPNVIEAAEEAKERGM-KVIALT 137 (138)
T ss_dssp HHHHTT--TT-EEEEEESSS-SHHHHHHHHHHHHTT--EEEEEE
T ss_pred HHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC-EEEEEe
Confidence 344566899999988833 4677889999999999 888764
No 437
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=72.10 E-value=12 Score=32.94 Aligned_cols=33 Identities=30% Similarity=0.261 Sum_probs=27.1
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Q 025895 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI 227 (246)
Q Consensus 195 ~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~ 227 (246)
+++|+|+|+|.+|+-++..+...|.++|.++.+
T Consensus 172 g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~ 204 (352)
T PRK12770 172 GKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYR 204 (352)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEee
Confidence 689999999999998888777789854777754
No 438
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=72.08 E-value=5.5 Score=31.51 Aligned_cols=45 Identities=29% Similarity=0.321 Sum_probs=28.5
Q ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHh
Q 025895 190 AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM 236 (246)
Q Consensus 190 ~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~ 236 (246)
.....+.+||=+|+| +|+..+.+++..+..+|+++|.++ -++.++
T Consensus 41 ~~~~~~~~VLELGaG-~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~ 85 (173)
T PF10294_consen 41 PELFRGKRVLELGAG-TGLPGIAAAKLFGAARVVLTDYNE-VLELLR 85 (173)
T ss_dssp GGGTTTSEEEETT-T-TSHHHHHHHHT-T-SEEEEEE-S--HHHHHH
T ss_pred hhhcCCceEEEECCc-cchhHHHHHhccCCceEEEeccch-hhHHHH
Confidence 345677888888987 567666777765666999999887 554443
No 439
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=72.04 E-value=7.8 Score=36.97 Aligned_cols=37 Identities=24% Similarity=0.356 Sum_probs=32.3
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 025895 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 230 (246)
Q Consensus 193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~ 230 (246)
...++|+|+|+|.+|...++.|+.+|+ +|++++.+++
T Consensus 20 ~~~k~IgIIGgGqlg~mla~aA~~lG~-~Vi~ld~~~~ 56 (577)
T PLN02948 20 VSETVVGVLGGGQLGRMLCQAASQMGI-KVKVLDPLED 56 (577)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCCC
Confidence 345789999999999999999999999 8999887654
No 440
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=72.03 E-value=11 Score=30.91 Aligned_cols=35 Identities=34% Similarity=0.296 Sum_probs=29.8
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (246)
Q Consensus 194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~ 229 (246)
.++.|||+|+|.++.-=+.+....|+ +|+++..+.
T Consensus 11 ~~k~VlvvGgG~va~rKa~~ll~~ga-~v~Vvs~~~ 45 (210)
T COG1648 11 EGKKVLVVGGGSVALRKARLLLKAGA-DVTVVSPEF 45 (210)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCC-EEEEEcCCc
Confidence 35789999999999999999999999 777776555
No 441
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=71.88 E-value=7.3 Score=35.00 Aligned_cols=37 Identities=30% Similarity=0.548 Sum_probs=30.3
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (246)
Q Consensus 192 ~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~ 229 (246)
+.++++|+|+|+|.+|+-++..++..|. +|..+.+.+
T Consensus 141 ~~~~~~vvViGgG~ig~E~A~~l~~~g~-~Vtlv~~~~ 177 (396)
T PRK09754 141 LQPERSVVIVGAGTIGLELAASATQRRC-KVTVIELAA 177 (396)
T ss_pred hhcCCeEEEECCCHHHHHHHHHHHHcCC-eEEEEecCC
Confidence 3467899999999999998888888998 787776543
No 442
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=71.82 E-value=8.8 Score=26.20 Aligned_cols=38 Identities=34% Similarity=0.431 Sum_probs=20.7
Q ss_pred CCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCCeEEEEcCC
Q 025895 190 AKVEPGSIVAVFGL-GTVGLAVAEGA-KAAGASRVIGIDID 228 (246)
Q Consensus 190 ~~~~~~~~VlI~Ga-g~~G~~ai~~a-~~~G~~~vi~~~~~ 228 (246)
..+...++|||+|+ ++.|+++-..+ -..|+ .++.+.-.
T Consensus 34 ~~~~GpK~VLViGaStGyGLAsRIa~aFg~gA-~TiGV~fE 73 (78)
T PF12242_consen 34 GKINGPKKVLVIGASTGYGLASRIAAAFGAGA-DTIGVSFE 73 (78)
T ss_dssp ---TS-SEEEEES-SSHHHHHHHHHHHHCC---EEEEEE--
T ss_pred CCCCCCceEEEEecCCcccHHHHHHHHhcCCC-CEEEEeec
Confidence 44544589999998 89998754333 35677 77777443
No 443
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=71.77 E-value=13 Score=30.62 Aligned_cols=42 Identities=24% Similarity=0.254 Sum_probs=31.7
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895 191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG 235 (246)
Q Consensus 191 ~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~ 235 (246)
...++.+||+.|.| .|.-++-+|. .|+ .|+++|.++.-++.+
T Consensus 34 ~~~~~~rvL~~gCG-~G~da~~LA~-~G~-~V~avD~s~~Ai~~~ 75 (218)
T PRK13255 34 ALPAGSRVLVPLCG-KSLDMLWLAE-QGH-EVLGVELSELAVEQF 75 (218)
T ss_pred CCCCCCeEEEeCCC-ChHhHHHHHh-CCC-eEEEEccCHHHHHHH
Confidence 44567899998764 3555666664 799 999999999987765
No 444
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=71.76 E-value=16 Score=32.76 Aligned_cols=47 Identities=26% Similarity=0.143 Sum_probs=36.2
Q ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEcC--ChhHHHHHhhcCCCcc
Q 025895 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDI--DPKKFDRGMSCVSSSK 243 (246)
Q Consensus 197 ~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~--~~~~~~~~~~lg~~~~ 243 (246)
.|+...+|..|++.+..|+.+|+.-++++.. +..|.+.++.+||++.
T Consensus 50 ~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~ 98 (380)
T TIGR01127 50 GVVAASAGNHAQGVAYAAKKFGIKAVIVMPESAPPSKVKATKSYGAEVI 98 (380)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCcHHHHHHHHHCCCEEE
Confidence 4555577999999999999999955555533 3468899999999854
No 445
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=71.74 E-value=17 Score=29.50 Aligned_cols=50 Identities=20% Similarity=0.213 Sum_probs=35.7
Q ss_pred hhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCChhHHHHHh
Q 025895 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDRGM 236 (246)
Q Consensus 186 l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G-~~~vi~~~~~~~~~~~~~ 236 (246)
+.+...++++++||=+|.| .|..+..+++..+ ..+|++++.+++-.+.++
T Consensus 64 ~~~~l~~~~~~~VLDiG~G-sG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~ 114 (205)
T PRK13944 64 MCELIEPRPGMKILEVGTG-SGYQAAVCAEAIERRGKVYTVEIVKELAIYAA 114 (205)
T ss_pred HHHhcCCCCCCEEEEECcC-ccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHH
Confidence 3455667888999888874 3666667777664 238999999998666554
No 446
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=71.62 E-value=6.8 Score=33.20 Aligned_cols=36 Identities=19% Similarity=0.184 Sum_probs=28.1
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCC----------eEEEEcCC
Q 025895 193 EPGSIVAVFGLGTVGLAVAEGAKAAGAS----------RVIGIDID 228 (246)
Q Consensus 193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~----------~vi~~~~~ 228 (246)
-.+.+|+++|+|..|...+.+....+.+ +++.+|+.
T Consensus 23 l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~ 68 (254)
T cd00762 23 ISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRK 68 (254)
T ss_pred hhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCC
Confidence 3457899999999888888777776664 78888765
No 447
>PLN02712 arogenate dehydrogenase
Probab=71.60 E-value=13 Score=36.21 Aligned_cols=43 Identities=19% Similarity=0.187 Sum_probs=35.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCC
Q 025895 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVS 240 (246)
Q Consensus 196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~ 240 (246)
.+|.|+|.|.+|...+..++..|. +|+++++++.+ +.+.++|.
T Consensus 53 ~kIgIIG~G~mG~slA~~L~~~G~-~V~~~dr~~~~-~~A~~~Gv 95 (667)
T PLN02712 53 LKIAIIGFGNYGQFLAKTLISQGH-TVLAHSRSDHS-LAARSLGV 95 (667)
T ss_pred CEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCCHHH-HHHHHcCC
Confidence 479999999999998888888898 89999888654 45666664
No 448
>PRK06382 threonine dehydratase; Provisional
Probab=71.53 E-value=16 Score=33.18 Aligned_cols=46 Identities=20% Similarity=0.102 Sum_probs=36.0
Q ss_pred EEEECCCHHHHHHHHHHHHcCCCeEEEEcCC--hhHHHHHhhcCCCcc
Q 025895 198 VAVFGLGTVGLAVAEGAKAAGASRVIGIDID--PKKFDRGMSCVSSSK 243 (246)
Q Consensus 198 VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~--~~~~~~~~~lg~~~~ 243 (246)
|+..++|..|++.+..|+.+|..-++++... ..|.+.++.+||++.
T Consensus 76 vv~aSsGN~g~a~A~aa~~~G~~~~ivmp~~~~~~k~~~~~~~GA~Vv 123 (406)
T PRK06382 76 VITASAGNHAQGVAYAASINGIDAKIVMPEYTIPQKVNAVEAYGAHVI 123 (406)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHcCCEEE
Confidence 5545669999999999999999666666443 478889999999854
No 449
>PRK06381 threonine synthase; Validated
Probab=71.39 E-value=11 Score=32.95 Aligned_cols=47 Identities=19% Similarity=0.080 Sum_probs=36.0
Q ss_pred EEEEECC-CHHHHHHHHHHHHcCCCeEEEEcC--ChhHHHHHhhcCCCcc
Q 025895 197 IVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI--DPKKFDRGMSCVSSSK 243 (246)
Q Consensus 197 ~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~--~~~~~~~~~~lg~~~~ 243 (246)
+.||.+. |..|++.+..++..|+.-++.+.. ++.|++.++.+||++.
T Consensus 64 ~~lv~aSsGN~g~alA~~aa~~G~~~~ivvp~~~~~~~~~~l~~~GA~V~ 113 (319)
T PRK06381 64 SGITVGTCGNYGASIAYFARLYGLKAVIFIPRSYSNSRVKEMEKYGAEII 113 (319)
T ss_pred CEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEE
Confidence 4455554 999999999999999955555543 3578899999999864
No 450
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=70.94 E-value=7.3 Score=36.46 Aligned_cols=31 Identities=32% Similarity=0.177 Sum_probs=26.6
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEc
Q 025895 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGID 226 (246)
Q Consensus 195 ~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~ 226 (246)
.-.|+|+|+|+.|+.++..+...|. ++++++
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~-~v~li~ 241 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGI-RTGIVA 241 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCC-cEEEEe
Confidence 4579999999999999999999999 666664
No 451
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=70.74 E-value=17 Score=30.17 Aligned_cols=49 Identities=20% Similarity=0.234 Sum_probs=35.8
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC--ChhHHHHHhhcCCCc
Q 025895 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI--DPKKFDRGMSCVSSS 242 (246)
Q Consensus 194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~--~~~~~~~~~~lg~~~ 242 (246)
++..|+..+.|..|.+.+..++..|..-++.+.. ++.+++.++.+|+.+
T Consensus 49 ~~~~vv~~ssGN~g~alA~~a~~~g~~~~v~~p~~~~~~~~~~~~~~Ga~v 99 (244)
T cd00640 49 PKGVIIESTGGNTGIALAAAAARLGLKCTIVMPEGASPEKVAQMRALGAEV 99 (244)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEE
Confidence 3455544455899999999999999954444433 556888899999874
No 452
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=70.72 E-value=11 Score=37.13 Aligned_cols=37 Identities=35% Similarity=0.371 Sum_probs=31.2
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (246)
Q Consensus 192 ~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~ 228 (246)
...+++|+|+|+|.+|+-++..+...|+++|..+.+.
T Consensus 567 ~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~ 603 (752)
T PRK12778 567 IKFGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRR 603 (752)
T ss_pred ccCCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeec
Confidence 3567899999999999999999999999557777654
No 453
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=70.46 E-value=12 Score=31.13 Aligned_cols=34 Identities=15% Similarity=0.100 Sum_probs=27.7
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (246)
Q Consensus 194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~ 228 (246)
.+.+|||+|+|.++.-=+..+...|+ +|.+++..
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA-~VtVVap~ 57 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGC-YVYILSKK 57 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCC
Confidence 45789999999999888888888998 77777443
No 454
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=70.17 E-value=6 Score=40.57 Aligned_cols=36 Identities=33% Similarity=0.458 Sum_probs=33.1
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (246)
Q Consensus 193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~ 229 (246)
.-|.+|.|+|.|+.|++|+..+..+|. .|++..+++
T Consensus 1783 rtg~~vaiigsgpaglaaadqlnk~gh-~v~vyer~d 1818 (2142)
T KOG0399|consen 1783 RTGKRVAIIGSGPAGLAAADQLNKAGH-TVTVYERSD 1818 (2142)
T ss_pred ccCcEEEEEccCchhhhHHHHHhhcCc-EEEEEEecC
Confidence 458899999999999999999999999 999998886
No 455
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=70.08 E-value=7.5 Score=37.60 Aligned_cols=32 Identities=28% Similarity=0.279 Sum_probs=27.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (246)
Q Consensus 196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~ 228 (246)
..|+|+|+|.+|.+++..+...|. +|++++..
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G~-~V~VlE~~ 292 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRGW-QVTLYEAD 292 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCCC-eEEEEecC
Confidence 479999999999998877777898 89999875
No 456
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=70.05 E-value=7.4 Score=33.43 Aligned_cols=44 Identities=36% Similarity=0.397 Sum_probs=29.5
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCChhHHHHHhhc
Q 025895 195 GSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRGMSC 238 (246)
Q Consensus 195 ~~~VlI~Gag~~G~~ai~~a~~~G~-~~vi~~~~~~~~~~~~~~l 238 (246)
.++|+.+|.|++=+.++.+++..+. ..|+.+|.+++..++++++
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~l 165 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRL 165 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHH
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH
Confidence 3599999999999999999988753 2688999999988777553
No 457
>PRK08813 threonine dehydratase; Provisional
Probab=69.86 E-value=20 Score=31.97 Aligned_cols=46 Identities=15% Similarity=0.066 Sum_probs=35.2
Q ss_pred EEEECCCHHHHHHHHHHHHcCCCeEEEEc--CChhHHHHHhhcCCCcc
Q 025895 198 VAVFGLGTVGLAVAEGAKAAGASRVIGID--IDPKKFDRGMSCVSSSK 243 (246)
Q Consensus 198 VlI~Gag~~G~~ai~~a~~~G~~~vi~~~--~~~~~~~~~~~lg~~~~ 243 (246)
|+...+|..|++.+..++.+|+.-+|.+. .++.|.+.++.+|+.+.
T Consensus 84 VV~aSsGN~G~alA~aa~~~Gi~~~IvvP~~~~~~K~~~i~~~GAeVv 131 (349)
T PRK08813 84 VICASAGNHAQGVAWSAYRLGVQAITVMPHGAPQTKIAGVAHWGATVR 131 (349)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEE
Confidence 43335599999999999999995555553 45578899999999854
No 458
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=69.85 E-value=19 Score=29.62 Aligned_cols=41 Identities=27% Similarity=0.311 Sum_probs=31.8
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG 235 (246)
Q Consensus 192 ~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~ 235 (246)
..++.+||+.|.| .|.-++-+|. .|+ .|+++|.++.-++.+
T Consensus 32 ~~~~~rvLd~GCG-~G~da~~LA~-~G~-~V~gvD~S~~Ai~~~ 72 (213)
T TIGR03840 32 LPAGARVFVPLCG-KSLDLAWLAE-QGH-RVLGVELSEIAVEQF 72 (213)
T ss_pred CCCCCeEEEeCCC-chhHHHHHHh-CCC-eEEEEeCCHHHHHHH
Confidence 3567899999875 3566666664 799 999999999988864
No 459
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=69.78 E-value=13 Score=38.00 Aligned_cols=36 Identities=28% Similarity=0.327 Sum_probs=30.2
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Q 025895 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI 227 (246)
Q Consensus 192 ~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~ 227 (246)
...+++|+|+|+|.+|+-++..++.+|++.|..+.+
T Consensus 568 ~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~r 603 (1006)
T PRK12775 568 ISLGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYR 603 (1006)
T ss_pred ccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEee
Confidence 357899999999999999999999999966655543
No 460
>PRK01581 speE spermidine synthase; Validated
Probab=69.78 E-value=15 Score=32.88 Aligned_cols=44 Identities=25% Similarity=0.203 Sum_probs=34.3
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS 237 (246)
Q Consensus 193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~ 237 (246)
...++|||+|.| .|..+..+++..+..+|++++.+++-.+.+++
T Consensus 149 ~~PkrVLIIGgG-dG~tlrelLk~~~v~~It~VEIDpeVIelAr~ 192 (374)
T PRK01581 149 IDPKRVLILGGG-DGLALREVLKYETVLHVDLVDLDGSMINMARN 192 (374)
T ss_pred CCCCEEEEECCC-HHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Confidence 344799999865 45566777776666699999999998888885
No 461
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=69.76 E-value=10 Score=32.81 Aligned_cols=35 Identities=34% Similarity=0.450 Sum_probs=30.9
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (246)
Q Consensus 195 ~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~ 229 (246)
..+|||.|.|++|.-++..+-..|.+++..+|...
T Consensus 19 ~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ 53 (286)
T cd01491 19 KSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKP 53 (286)
T ss_pred cCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Confidence 36899999999999999999999998898887653
No 462
>PLN00016 RNA-binding protein; Provisional
Probab=69.45 E-value=6.5 Score=35.02 Aligned_cols=38 Identities=18% Similarity=0.150 Sum_probs=31.9
Q ss_pred CCCCEEEEE----CC-CHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 025895 193 EPGSIVAVF----GL-GTVGLAVAEGAKAAGASRVIGIDIDPKK 231 (246)
Q Consensus 193 ~~~~~VlI~----Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~ 231 (246)
....+|||+ |+ |.+|...+..+...|. +|+++++++.+
T Consensus 50 ~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~-~V~~l~R~~~~ 92 (378)
T PLN00016 50 VEKKKVLIVNTNSGGHAFIGFYLAKELVKAGH-EVTLFTRGKEP 92 (378)
T ss_pred cccceEEEEeccCCCceeEhHHHHHHHHHCCC-EEEEEecCCcc
Confidence 344689999 98 9999999998888898 89999887654
No 463
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=69.43 E-value=19 Score=28.50 Aligned_cols=49 Identities=18% Similarity=0.194 Sum_probs=33.8
Q ss_pred hhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS 237 (246)
Q Consensus 188 ~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~ 237 (246)
....+.++++||=+|.|. |..++.+++.....+|++++.+++.++.+++
T Consensus 25 ~~l~~~~~~~vLDiG~G~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~ 73 (187)
T PRK08287 25 SKLELHRAKHLIDVGAGT-GSVSIEAALQFPSLQVTAIERNPDALRLIKE 73 (187)
T ss_pred HhcCCCCCCEEEEECCcC-CHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Confidence 445667788888777643 5556666666533489999999987776653
No 464
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=69.42 E-value=15 Score=29.90 Aligned_cols=49 Identities=31% Similarity=0.365 Sum_probs=36.7
Q ss_pred hCCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCChhHHHHHhhc
Q 025895 189 TAKVEPGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDRGMSC 238 (246)
Q Consensus 189 ~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G-~~~vi~~~~~~~~~~~~~~l 238 (246)
....+++.+||-+|.|. |..+..+++..+ ..++++++.+++..+.+++.
T Consensus 46 ~~~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~ 95 (239)
T PRK00216 46 WLGVRPGDKVLDLACGT-GDLAIALAKAVGKTGEVVGLDFSEGMLAVGREK 95 (239)
T ss_pred HhCCCCCCeEEEeCCCC-CHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHh
Confidence 34455778898888876 777778888775 23999999999887777653
No 465
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=69.33 E-value=11 Score=34.12 Aligned_cols=33 Identities=33% Similarity=0.437 Sum_probs=25.2
Q ss_pred CCCCEEEEECC-CHHHHH--HHHHHHHcCCCeEEEEcC
Q 025895 193 EPGSIVAVFGL-GTVGLA--VAEGAKAAGASRVIGIDI 227 (246)
Q Consensus 193 ~~~~~VlI~Ga-g~~G~~--ai~~a~~~G~~~vi~~~~ 227 (246)
..++++||+|+ +++|++ .++.+ ..|+ .+++++.
T Consensus 39 ~ggK~aLVTGaSsGIGlA~~IA~al-~~GA-~Vi~v~~ 74 (398)
T PRK13656 39 NGPKKVLVIGASSGYGLASRIAAAF-GAGA-DTLGVFF 74 (398)
T ss_pred CCCCEEEEECCCchHhHHHHHHHHH-HcCC-eEEEEec
Confidence 45678999988 899998 45555 7899 7777764
No 466
>PF00166 Cpn10: Chaperonin 10 Kd subunit; InterPro: IPR020818 The chaperonins are `helper' molecules required for correct folding and subsequent assembly of some proteins []. These are required for normal cell growth [], and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions. Type I chaperonins present in eubacteria, mitochondria and chloroplasts require the concerted action of 2 proteins, chaperonin 60 (cpn60) and chaperonin 10 (cpn10) []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between six to eight identical subunits, while the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The central cavity of the cylindrical cpn60 tetradecamer provides as isolated environment for protein folding whilst cpn-10 binds to cpn-60 and synchronizes the release of the folded protein in an Mg2+-ATP dependent manner []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. Escherichia coli GroES has also been shown to bind ATP cooperatively, and with an affinity comparable to that of GroEL []. Each GroEL subunit contains three structurally distinct domains: an apical, an intermediate and an equatorial domain. The apical domain contains the binding sites for both GroES and the unfolded protein substrate. The equatorial domain contains the ATP-binding site and most of the oligomeric contacts. The intermediate domain links the apical and equatorial domains and transfers allosteric information between them. The GroEL oligomer is a tetradecamer, cylindrically shaped, that is organised in two heptameric rings stacked back to back. Each GroEL ring contains a central cavity, known as the `Anfinsen cage', that provides an isolated environment for protein folding. The identical 10 kDa subunits of GroES form a dome-like heptameric oligomer in solution. ATP binding to GroES may be important in charging the seven subunits of the interacting GroEL ring with ATP, to facilitate cooperative ATP binding and hydrolysis for substrate protein release.; GO: 0006457 protein folding, 0005737 cytoplasm; PDB: 1PF9_Q 1AON_P 1SX4_T 1SVT_R 2C7D_P 1PCQ_O 2C7C_Q 1GRU_Q 1WNR_F 1P3H_I ....
Probab=69.27 E-value=12 Score=26.47 Aligned_cols=26 Identities=35% Similarity=0.428 Sum_probs=18.1
Q ss_pred eEEEEEEcCCCC---------CccCCCCEEEeeCC
Q 025895 71 AAGIVESVGEGV---------TEVQPGDHVIPCYQ 96 (246)
Q Consensus 71 ~vG~V~~vG~~~---------~~~~~Gd~V~~~~~ 96 (246)
..|+|+++|++. ..+++||+|+...+
T Consensus 35 ~~G~VvaVG~G~~~~~g~~~~~~vk~GD~Vl~~~~ 69 (93)
T PF00166_consen 35 NQGKVVAVGPGRYNENGEEVPMDVKVGDKVLFPKY 69 (93)
T ss_dssp EEEEEEEE-SEEETTTSSEEETSS-TTSEEEEETT
T ss_pred ceeEEEEcCCccccCCCcEeeeeeeeccEEecccc
Confidence 579999999922 24889999986643
No 467
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=69.10 E-value=20 Score=29.17 Aligned_cols=51 Identities=24% Similarity=0.321 Sum_probs=35.9
Q ss_pred hhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCChhHHHHHhh
Q 025895 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRGMS 237 (246)
Q Consensus 186 l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~-~~vi~~~~~~~~~~~~~~ 237 (246)
+.....++++++||=+|.| .|..++.+++..+. ..|++++.+++-.+.+++
T Consensus 69 ~~~~l~~~~~~~VLDiG~G-sG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~ 120 (215)
T TIGR00080 69 MTELLELKPGMKVLEIGTG-SGYQAAVLAEIVGRDGLVVSIERIPELAEKAER 120 (215)
T ss_pred HHHHhCCCCcCEEEEECCC-ccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Confidence 4455678899999988764 25555667776543 369999999987766543
No 468
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase. This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.
Probab=69.00 E-value=17 Score=33.44 Aligned_cols=46 Identities=17% Similarity=0.109 Sum_probs=36.1
Q ss_pred EEEE-CCCHHHHHHHHHHHHcCCCeEEEEc--CChhHHHHHhhcCCCcc
Q 025895 198 VAVF-GLGTVGLAVAEGAKAAGASRVIGID--IDPKKFDRGMSCVSSSK 243 (246)
Q Consensus 198 VlI~-Gag~~G~~ai~~a~~~G~~~vi~~~--~~~~~~~~~~~lg~~~~ 243 (246)
-+|. .+|..|+.....++.+|+.-+|++. .++.|.+.++.+||++.
T Consensus 154 ~Vv~aSsGN~G~slA~~Aa~lG~~~~IvmP~~a~~~K~~~ir~~GAeVv 202 (431)
T TIGR02035 154 SIAVGSTGNLGLSIGIISAALGFQVTVHMSADAKQWKKDKLRSKGVTVV 202 (431)
T ss_pred eEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEE
Confidence 3444 4599999999999999996566664 34579999999999854
No 469
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=68.99 E-value=7.8 Score=35.60 Aligned_cols=31 Identities=26% Similarity=0.264 Sum_probs=24.0
Q ss_pred EEEEECCCHHHHHHH-HHHHHc-CCCeEEEEcCC
Q 025895 197 IVAVFGLGTVGLAVA-EGAKAA-GASRVIGIDID 228 (246)
Q Consensus 197 ~VlI~Gag~~G~~ai-~~a~~~-G~~~vi~~~~~ 228 (246)
.|+|+|+|.+|++++ .+++.. |. +|++++..
T Consensus 26 DVvIIGgGi~Gls~A~~La~~~~G~-~V~vlE~~ 58 (460)
T TIGR03329 26 DVCIVGGGFTGLWTAIMIKQQRPAL-DVLVLEAD 58 (460)
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCC-eEEEEeCC
Confidence 588899999999876 566553 77 88888765
No 470
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=68.92 E-value=11 Score=32.25 Aligned_cols=34 Identities=24% Similarity=0.208 Sum_probs=30.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (246)
Q Consensus 196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~ 229 (246)
.+|||+|.|++|.-+++.+-..|..++..+|...
T Consensus 27 SrVLVVG~GGLGsEVAKnLaLAGVGsItIvDdD~ 60 (287)
T PTZ00245 27 TSVALHGVAGAAAEAAKNLVLAGVRAVAVADEGL 60 (287)
T ss_pred CeEEEECCCchHHHHHHHHHHcCCCeEEEecCCc
Confidence 6899999999999999999999998888887654
No 471
>PRK07476 eutB threonine dehydratase; Provisional
Probab=68.87 E-value=18 Score=31.65 Aligned_cols=46 Identities=24% Similarity=0.212 Sum_probs=35.0
Q ss_pred EEEECCCHHHHHHHHHHHHcCCCeEEEEcC--ChhHHHHHhhcCCCcc
Q 025895 198 VAVFGLGTVGLAVAEGAKAAGASRVIGIDI--DPKKFDRGMSCVSSSK 243 (246)
Q Consensus 198 VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~--~~~~~~~~~~lg~~~~ 243 (246)
|+....|..|++.+.+++..|+.-++.+.. ++.|.+.++.+||++.
T Consensus 70 vv~aSsGN~g~alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~GA~V~ 117 (322)
T PRK07476 70 VVTASTGNHGRALAYAARALGIRATICMSRLVPANKVDAIRALGAEVR 117 (322)
T ss_pred EEEECCChHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHcCCEEE
Confidence 554455999999999999999954555543 3468889999999853
No 472
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=68.74 E-value=18 Score=31.62 Aligned_cols=48 Identities=21% Similarity=0.149 Sum_probs=35.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC--ChhHHHHHhhcCCCcc
Q 025895 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI--DPKKFDRGMSCVSSSK 243 (246)
Q Consensus 196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~--~~~~~~~~~~lg~~~~ 243 (246)
+.|+....|..|++....++.+|..-++.+.. ++.|.+.++.+||++.
T Consensus 68 ~~vv~aSsGN~g~alA~~a~~~G~~~~v~~p~~~~~~k~~~~~~~GA~V~ 117 (317)
T TIGR02991 68 AGVVAASTGNHGRALAYAAAEEGVRATICMSELVPQNKVDEIRRLGAEVR 117 (317)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHcCCEEE
Confidence 34544455999999999999999944444433 3468889999999853
No 473
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=68.70 E-value=29 Score=30.03 Aligned_cols=56 Identities=23% Similarity=0.193 Sum_probs=38.7
Q ss_pred ccccchhhhhhhhhhCCCC-CCCEEEEECCC-HHHHHHHHHHHHcCCCeEEEEcCChhHH
Q 025895 175 LGCGVPTGLGAVWNTAKVE-PGSIVAVFGLG-TVGLAVAEGAKAAGASRVIGIDIDPKKF 232 (246)
Q Consensus 175 l~~~~~ta~~~l~~~~~~~-~~~~VlI~Gag-~~G~~ai~~a~~~G~~~vi~~~~~~~~~ 232 (246)
++|....... +.+..++. .|++|+|+|.| .+|.-.+.++...|+ +|.++......+
T Consensus 137 ~PcTp~avi~-lL~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gA-tVtv~hs~t~~l 194 (285)
T PRK14191 137 VPATPMGVMR-LLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLNAGA-SVSVCHILTKDL 194 (285)
T ss_pred CCCcHHHHHH-HHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCC-EEEEEeCCcHHH
Confidence 3444333333 44545543 68999999986 999999999999999 888876544433
No 474
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=68.64 E-value=12 Score=29.81 Aligned_cols=42 Identities=26% Similarity=0.469 Sum_probs=29.5
Q ss_pred hCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 025895 189 TAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 230 (246)
Q Consensus 189 ~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~ 230 (246)
...++++++||.+|+|.-++......+..+..+|+++|.++.
T Consensus 27 ~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~ 68 (188)
T TIGR00438 27 FKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPM 68 (188)
T ss_pred hcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEecccc
Confidence 445688999999998766654444444434447999998875
No 475
>PRK04457 spermidine synthase; Provisional
Probab=68.28 E-value=18 Score=30.63 Aligned_cols=45 Identities=16% Similarity=0.156 Sum_probs=35.0
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhc
Q 025895 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSC 238 (246)
Q Consensus 193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~l 238 (246)
.+.++||++|.|. |.++..+++.....++++++.+++-.+.+++.
T Consensus 65 ~~~~~vL~IG~G~-G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~ 109 (262)
T PRK04457 65 PRPQHILQIGLGG-GSLAKFIYTYLPDTRQTAVEINPQVIAVARNH 109 (262)
T ss_pred CCCCEEEEECCCH-hHHHHHHHHhCCCCeEEEEECCHHHHHHHHHH
Confidence 3457899998863 66777777777544899999999998888763
No 476
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=68.03 E-value=23 Score=32.28 Aligned_cols=46 Identities=20% Similarity=0.125 Sum_probs=36.2
Q ss_pred EEEE-CCCHHHHHHHHHHHHcCCCeEEEEc--CChhHHHHHhhcCCCcc
Q 025895 198 VAVF-GLGTVGLAVAEGAKAAGASRVIGID--IDPKKFDRGMSCVSSSK 243 (246)
Q Consensus 198 VlI~-Gag~~G~~ai~~a~~~G~~~vi~~~--~~~~~~~~~~~lg~~~~ 243 (246)
-+|. .+|..|+..+..++.+|+.-+|++. .+++|.+.++.+||++.
T Consensus 136 ~VV~aSsGN~G~alA~~a~~~G~~~~IvvP~~~~~~K~~~ira~GAeVv 184 (404)
T cd06447 136 SIAVGSTGNLGLSIGIMAAALGFKVTVHMSADAKQWKKDKLRSKGVTVV 184 (404)
T ss_pred EEEEECccHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEE
Confidence 3455 4599999999999999996566653 45579999999999854
No 477
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=67.98 E-value=8.6 Score=35.98 Aligned_cols=33 Identities=30% Similarity=0.175 Sum_probs=27.5
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEc
Q 025895 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID 226 (246)
Q Consensus 193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~ 226 (246)
+....|+|+|+|+-|+.|+..+...|. +|++++
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~-~v~li~ 242 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGL-RTAMVA 242 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCC-cEEEEe
Confidence 344679999999999999999999999 666663
No 478
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=67.94 E-value=17 Score=35.22 Aligned_cols=38 Identities=29% Similarity=0.344 Sum_probs=31.3
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895 191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (246)
Q Consensus 191 ~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~ 228 (246)
....+++|+|+|+|.+|+-++..+...|+++|..+.+.
T Consensus 319 ~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~ 356 (652)
T PRK12814 319 ALHPGKKVVVIGGGNTAIDAARTALRLGAESVTILYRR 356 (652)
T ss_pred cccCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeec
Confidence 35678999999999999999888888998667776543
No 479
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=67.40 E-value=16 Score=29.34 Aligned_cols=46 Identities=20% Similarity=0.145 Sum_probs=30.6
Q ss_pred hhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHh
Q 025895 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM 236 (246)
Q Consensus 188 ~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~ 236 (246)
......++.+||-+|.| .|..++.+++ .|. +|+++|.+++-++.++
T Consensus 24 ~~~~~~~~~~vLDiGcG-~G~~a~~la~-~g~-~V~~iD~s~~~l~~a~ 69 (195)
T TIGR00477 24 EAVKTVAPCKTLDLGCG-QGRNSLYLSL-AGY-DVRAWDHNPASIASVL 69 (195)
T ss_pred HHhccCCCCcEEEeCCC-CCHHHHHHHH-CCC-eEEEEECCHHHHHHHH
Confidence 33444455788888763 3455555665 477 8999999997666554
No 480
>PLN02529 lysine-specific histone demethylase 1
Probab=67.34 E-value=9.6 Score=37.45 Aligned_cols=35 Identities=26% Similarity=0.334 Sum_probs=30.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (246)
Q Consensus 194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~ 229 (246)
...+|+|+|+|..|+.++..+...|+ +|++++.++
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~-~v~v~E~~~ 193 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGF-KVVVLEGRN 193 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCC-cEEEEecCc
Confidence 34678999999999999999999999 788887765
No 481
>PRK08639 threonine dehydratase; Validated
Probab=67.19 E-value=23 Score=32.33 Aligned_cols=46 Identities=20% Similarity=0.140 Sum_probs=36.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC--hhHHHHHhhcCCC
Q 025895 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID--PKKFDRGMSCVSS 241 (246)
Q Consensus 196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~--~~~~~~~~~lg~~ 241 (246)
+.|+..++|..|++.+..|+.+|..-++++..+ +.|.+.++.+||+
T Consensus 74 ~~Vv~aSsGN~g~alA~~a~~~G~~~~IvmP~~~~~~k~~~~r~~GA~ 121 (420)
T PRK08639 74 AGVVCASAGNHAQGVAYACRHLGIPGVIFMPVTTPQQKIDQVRFFGGE 121 (420)
T ss_pred CEEEEECccHHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHcCCC
Confidence 445555779999999999999999666666443 4688999999997
No 482
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=67.09 E-value=8.7 Score=32.08 Aligned_cols=32 Identities=31% Similarity=0.321 Sum_probs=25.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (246)
Q Consensus 196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~ 228 (246)
..|+|.|+|+.|+.|+..+-..|+ +|.++.++
T Consensus 31 sDViIVGaGPsGLtAAyyLAk~g~-kV~i~E~~ 62 (262)
T COG1635 31 SDVIIVGAGPSGLTAAYYLAKAGL-KVAIFERK 62 (262)
T ss_pred ccEEEECcCcchHHHHHHHHhCCc-eEEEEEee
Confidence 457788999999998888888899 77777543
No 483
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=67.05 E-value=9.1 Score=35.64 Aligned_cols=38 Identities=29% Similarity=0.397 Sum_probs=33.2
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 025895 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 230 (246)
Q Consensus 192 ~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~ 230 (246)
+...+++||+|+|..|+.|+.-+-.+|+ +|+.+..++.
T Consensus 121 ~~v~~svLVIGGGvAGitAAl~La~~G~-~v~LVEKeps 158 (622)
T COG1148 121 VEVSKSVLVIGGGVAGITAALELADMGF-KVYLVEKEPS 158 (622)
T ss_pred HhhccceEEEcCcHHHHHHHHHHHHcCC-eEEEEecCCc
Confidence 4567899999999999998888889999 9999987775
No 484
>PRK07334 threonine dehydratase; Provisional
Probab=66.99 E-value=19 Score=32.59 Aligned_cols=47 Identities=19% Similarity=0.098 Sum_probs=36.5
Q ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEcC--ChhHHHHHhhcCCCcc
Q 025895 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDI--DPKKFDRGMSCVSSSK 243 (246)
Q Consensus 197 ~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~--~~~~~~~~~~lg~~~~ 243 (246)
.|+....|..|.+.+.+++..|..-++++.. ++.|++.++.+||++.
T Consensus 73 ~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~ 121 (403)
T PRK07334 73 GVIAMSAGNHAQGVAYHAQRLGIPATIVMPRFTPTVKVERTRGFGAEVV 121 (403)
T ss_pred cEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEE
Confidence 3554566999999999999999955555543 4578899999999853
No 485
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=66.95 E-value=7.9 Score=39.37 Aligned_cols=32 Identities=50% Similarity=0.562 Sum_probs=28.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (246)
Q Consensus 196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~ 228 (246)
..|+|+|+|+-|+.|+..+...|. +|++++..
T Consensus 164 ~dVvIIGaGPAGLaAA~~aar~G~-~V~liD~~ 195 (985)
T TIGR01372 164 CDVLVVGAGPAGLAAALAAARAGA-RVILVDEQ 195 (985)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCC-cEEEEecC
Confidence 469999999999999999999999 88888765
No 486
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=66.78 E-value=8.5 Score=36.71 Aligned_cols=34 Identities=26% Similarity=0.279 Sum_probs=27.9
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (246)
Q Consensus 195 ~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~ 229 (246)
.-.|||+|+|..|+.++..|...|+ +|++++..+
T Consensus 11 ~~DVvVVG~G~AGl~AA~~aae~G~-~VivlEk~~ 44 (584)
T PRK12835 11 EVDVLVVGSGGGGMTAALTAAARGL-DTLVVEKSA 44 (584)
T ss_pred cCCEEEECccHHHHHHHHHHHHCCC-cEEEEEcCC
Confidence 3458899999999998888888999 888886554
No 487
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=66.77 E-value=11 Score=34.87 Aligned_cols=37 Identities=24% Similarity=0.335 Sum_probs=32.5
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 025895 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 230 (246)
Q Consensus 193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~ 230 (246)
+-.++++|+|+|.+|+=..++...+|. +|.++.+.+.
T Consensus 171 ~lP~~lvIiGgG~IGlE~a~~~~~LG~-~VTiie~~~~ 207 (454)
T COG1249 171 ELPKSLVIVGGGYIGLEFASVFAALGS-KVTVVERGDR 207 (454)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCC
Confidence 455889999999999999999999999 8888877763
No 488
>PHA01634 hypothetical protein
Probab=66.74 E-value=18 Score=27.52 Aligned_cols=42 Identities=17% Similarity=0.091 Sum_probs=29.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS 237 (246)
Q Consensus 194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~ 237 (246)
.+++|+++||. +|..++-++ ..|++.|+++..++...+..++
T Consensus 28 k~KtV~dIGA~-iGdSaiYF~-l~GAK~Vva~E~~~kl~k~~ee 69 (156)
T PHA01634 28 YQRTIQIVGAD-CGSSALYFL-LRGASFVVQYEKEEKLRKKWEE 69 (156)
T ss_pred cCCEEEEecCC-ccchhhHHh-hcCccEEEEeccCHHHHHHHHH
Confidence 45889998872 333344433 5688899999888887776654
No 489
>PLN03075 nicotianamine synthase; Provisional
Probab=66.68 E-value=23 Score=30.84 Aligned_cols=46 Identities=28% Similarity=0.228 Sum_probs=37.9
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCChhHHHHHhhcC
Q 025895 194 PGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRGMSCV 239 (246)
Q Consensus 194 ~~~~VlI~Gag~~G~~ai~~a~~~G~-~~vi~~~~~~~~~~~~~~lg 239 (246)
+.++|+=+|.|+.++.++.+++.+.. .+++.+|.+++..+.+++.-
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~ 169 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLV 169 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHh
Confidence 67899989999999988888876533 37999999999888887644
No 490
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=66.64 E-value=9.3 Score=36.82 Aligned_cols=33 Identities=33% Similarity=0.307 Sum_probs=28.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (246)
Q Consensus 196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~ 229 (246)
-.|+|+|+|.+|..++.-+...|+ +|+.++..+
T Consensus 72 ~DVvVIGGGi~Ga~~A~~lA~rGl-~V~LvE~~d 104 (627)
T PLN02464 72 LDVLVVGGGATGAGVALDAATRGL-RVGLVERED 104 (627)
T ss_pred cCEEEECCCHHHHHHHHHHHhCCC-EEEEEeccc
Confidence 468999999999998888888899 899997764
No 491
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=66.58 E-value=15 Score=37.29 Aligned_cols=34 Identities=29% Similarity=0.297 Sum_probs=29.6
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (246)
Q Consensus 194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~ 228 (246)
.|++|+|+|+|.+|.-++..++..|+ +|+.+.+.
T Consensus 446 ~Gk~VvVIGGG~tA~D~A~ta~R~Ga-~Vtlv~rr 479 (944)
T PRK12779 446 KGKEVFVIGGGNTAMDAARTAKRLGG-NVTIVYRR 479 (944)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEEec
Confidence 57899999999999999999999999 67766544
No 492
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=66.45 E-value=8.5 Score=35.59 Aligned_cols=36 Identities=22% Similarity=0.371 Sum_probs=30.9
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (246)
Q Consensus 194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~ 229 (246)
.+.+||++|+|++|--.+..+...|++.|..+|..-
T Consensus 11 ~~~riLvVGaGGIGCELLKnLal~gf~~IhiIDlDT 46 (603)
T KOG2013|consen 11 KSGRILVVGAGGIGCELLKNLALTGFEEIHIIDLDT 46 (603)
T ss_pred ccCeEEEEecCcccHHHHHHHHHhcCCeeEEEeccc
Confidence 568999999999999999999999998888886543
No 493
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=66.39 E-value=20 Score=30.30 Aligned_cols=51 Identities=24% Similarity=0.210 Sum_probs=38.2
Q ss_pred hhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhc
Q 025895 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSC 238 (246)
Q Consensus 186 l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~l 238 (246)
+....+++++.+||=+|.|. |..+..+++..++ +|++++.+++-.+.+++.
T Consensus 44 ~l~~l~l~~~~~VLDiGcG~-G~~a~~la~~~~~-~v~giD~s~~~~~~a~~~ 94 (263)
T PTZ00098 44 ILSDIELNENSKVLDIGSGL-GGGCKYINEKYGA-HVHGVDICEKMVNIAKLR 94 (263)
T ss_pred HHHhCCCCCCCEEEEEcCCC-ChhhHHHHhhcCC-EEEEEECCHHHHHHHHHH
Confidence 44567788999998888752 4455666776787 999999999887777653
No 494
>PRK09224 threonine dehydratase; Reviewed
Probab=66.30 E-value=21 Score=33.51 Aligned_cols=47 Identities=21% Similarity=0.082 Sum_probs=36.3
Q ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEcC--ChhHHHHHhhcCCCcc
Q 025895 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDI--DPKKFDRGMSCVSSSK 243 (246)
Q Consensus 197 ~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~--~~~~~~~~~~lg~~~~ 243 (246)
.|+..++|..|++.+..|+.+|+.-++++.. .+.|.+.++.+||++.
T Consensus 70 gvV~aSaGNha~avA~aa~~lGi~~~IvmP~~tp~~K~~~~r~~GA~Vi 118 (504)
T PRK09224 70 GVITASAGNHAQGVALSAARLGIKAVIVMPVTTPDIKVDAVRAFGGEVV 118 (504)
T ss_pred EEEEECcCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEE
Confidence 3544577999999999999999966666643 3468889999999854
No 495
>PRK07402 precorrin-6B methylase; Provisional
Probab=66.29 E-value=23 Score=28.25 Aligned_cols=50 Identities=24% Similarity=0.299 Sum_probs=32.6
Q ss_pred hhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895 187 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS 237 (246)
Q Consensus 187 ~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~ 237 (246)
....+++++++||=+|+| .|..++.+++.....+|++++.+++..+.+++
T Consensus 33 ~~~l~~~~~~~VLDiG~G-~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~ 82 (196)
T PRK07402 33 ISQLRLEPDSVLWDIGAG-TGTIPVEAGLLCPKGRVIAIERDEEVVNLIRR 82 (196)
T ss_pred HHhcCCCCCCEEEEeCCC-CCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH
Confidence 445567788887766653 23344555555432389999999988776653
No 496
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=66.13 E-value=15 Score=27.20 Aligned_cols=33 Identities=33% Similarity=0.477 Sum_probs=26.1
Q ss_pred EEEEECC-CHHHHHHHHHHHH-cCCCeEEEEcCCh
Q 025895 197 IVAVFGL-GTVGLAVAEGAKA-AGASRVIGIDIDP 229 (246)
Q Consensus 197 ~VlI~Ga-g~~G~~ai~~a~~-~G~~~vi~~~~~~ 229 (246)
+|+|.|. |-+|...++.+.. .+++-+-++++++
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~ 36 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKP 36 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTT
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCC
Confidence 5889999 9999999999998 5774455566665
No 497
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=66.10 E-value=14 Score=35.61 Aligned_cols=52 Identities=12% Similarity=0.153 Sum_probs=34.8
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeE-EEEcCCh--hHH-HHHhhcCCCccccC
Q 025895 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRV-IGIDIDP--KKF-DRGMSCVSSSKYHL 246 (246)
Q Consensus 194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~v-i~~~~~~--~~~-~~~~~lg~~~~~~~ 246 (246)
+.-+|||+|+ |.+|...+..+...|. .| +...+-. +.. ..+.+.++|..+|+
T Consensus 379 ~~mkiLVtGa~G~iG~~l~~~L~~~g~-~v~~~~~~l~d~~~v~~~i~~~~pd~Vih~ 435 (668)
T PLN02260 379 PSLKFLIYGRTGWIGGLLGKLCEKQGI-AYEYGKGRLEDRSSLLADIRNVKPTHVFNA 435 (668)
T ss_pred CCceEEEECCCchHHHHHHHHHHhCCC-eEEeeccccccHHHHHHHHHhhCCCEEEEC
Confidence 4457999998 9999999998888898 66 4433221 222 33445677766653
No 498
>PRK06996 hypothetical protein; Provisional
Probab=66.02 E-value=10 Score=33.94 Aligned_cols=34 Identities=32% Similarity=0.322 Sum_probs=25.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHcCC---CeEEEEcCCh
Q 025895 196 SIVAVFGLGTVGLAVAEGAKAAGA---SRVIGIDIDP 229 (246)
Q Consensus 196 ~~VlI~Gag~~G~~ai~~a~~~G~---~~vi~~~~~~ 229 (246)
..|+|+|+|+.|++++..+...|. .+|+.++..+
T Consensus 12 ~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 12 FDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE 48 (398)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence 469999999999987776666652 1688887653
No 499
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=65.95 E-value=14 Score=35.71 Aligned_cols=50 Identities=22% Similarity=0.158 Sum_probs=36.1
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh--------hHHHHHhhcCCCc
Q 025895 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP--------KKFDRGMSCVSSS 242 (246)
Q Consensus 193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~--------~~~~~~~~lg~~~ 242 (246)
..+++|+|+|+|.+|+-++..+...|+++|..+.+.+ +..+.+++.|..+
T Consensus 466 ~~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~~~~e~~~~~~~Gv~~ 523 (654)
T PRK12769 466 TAGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPGSKKEVKNAREEGANF 523 (654)
T ss_pred CCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCCCCCCCHHHHHHHHHcCCeE
Confidence 3578999999999999999988999986677655432 2345566666553
No 500
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=65.78 E-value=21 Score=28.65 Aligned_cols=45 Identities=24% Similarity=0.095 Sum_probs=29.6
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS 237 (246)
Q Consensus 192 ~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~ 237 (246)
++++.+||-+|.| .|..++.+++.....+|+++|.+++..+.+++
T Consensus 43 l~~g~~VLDiGcG-tG~~al~la~~~~~~~V~giD~s~~~l~~A~~ 87 (187)
T PRK00107 43 LPGGERVLDVGSG-AGFPGIPLAIARPELKVTLVDSLGKKIAFLRE 87 (187)
T ss_pred cCCCCeEEEEcCC-CCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHH
Confidence 3457888888763 23445555554433399999999987765543
Done!