Query 025896
Match_columns 246
No_of_seqs 159 out of 1161
Neff 10.9
Searched_HMMs 46136
Date Fri Mar 29 10:47:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025896.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025896hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02770 haloacid dehalogenase 100.0 4.8E-41 1E-45 257.6 26.2 242 1-242 1-242 (248)
2 PRK13288 pyrophosphatase PpaX; 100.0 3.9E-35 8.4E-40 220.9 22.6 210 21-239 2-212 (214)
3 PLN03243 haloacid dehalogenase 100.0 5.7E-35 1.2E-39 224.0 22.8 210 20-235 22-234 (260)
4 PRK10826 2-deoxyglucose-6-phos 100.0 3.7E-35 8.1E-40 222.1 20.5 212 19-234 4-218 (222)
5 PRK13226 phosphoglycolate phos 100.0 6.8E-35 1.5E-39 221.2 21.6 208 20-231 10-220 (229)
6 COG0546 Gph Predicted phosphat 100.0 2.4E-34 5.3E-39 216.7 23.2 212 20-237 2-217 (220)
7 TIGR03351 PhnX-like phosphonat 100.0 2.4E-34 5.2E-39 217.6 22.0 205 22-230 1-214 (220)
8 PLN02575 haloacid dehalogenase 100.0 3.3E-34 7.2E-39 226.9 23.4 209 21-235 130-341 (381)
9 TIGR01422 phosphonatase phosph 100.0 3.4E-34 7.3E-39 221.0 21.9 206 21-231 1-248 (253)
10 PRK13478 phosphonoacetaldehyde 100.0 9.9E-34 2.1E-38 219.8 22.6 215 19-240 1-257 (267)
11 TIGR01449 PGP_bact 2-phosphogl 100.0 6.1E-34 1.3E-38 214.5 20.7 203 25-231 1-209 (213)
12 PRK11587 putative phosphatase; 100.0 4.4E-33 9.6E-38 210.0 21.7 203 20-232 1-204 (218)
13 PRK13222 phosphoglycolate phos 100.0 8.7E-33 1.9E-37 210.1 22.9 210 19-232 3-218 (226)
14 PRK13223 phosphoglycolate phos 100.0 3.2E-32 6.9E-37 211.0 22.3 212 20-238 11-230 (272)
15 PRK13225 phosphoglycolate phos 100.0 5.2E-32 1.1E-36 209.0 22.5 212 19-241 59-271 (273)
16 TIGR01454 AHBA_synth_RP 3-amin 100.0 9.3E-32 2E-36 201.2 20.6 201 25-237 1-203 (205)
17 TIGR02253 CTE7 HAD superfamily 100.0 3.3E-32 7.1E-37 206.2 16.6 205 22-231 2-220 (221)
18 COG0637 Predicted phosphatase/ 100.0 5.5E-32 1.2E-36 203.3 17.5 187 21-212 1-190 (221)
19 PRK10563 6-phosphogluconate ph 100.0 4.8E-32 1E-36 205.1 16.5 209 20-238 2-213 (221)
20 PLN02940 riboflavin kinase 100.0 2.9E-31 6.2E-36 214.2 20.9 209 20-235 9-220 (382)
21 PLN02779 haloacid dehalogenase 100.0 3E-30 6.4E-35 201.2 22.8 213 19-234 37-271 (286)
22 TIGR02009 PGMB-YQAB-SF beta-ph 100.0 9.2E-31 2E-35 192.9 18.8 179 22-207 1-185 (185)
23 PRK09449 dUMP phosphatase; Pro 100.0 3.3E-30 7.1E-35 195.5 20.6 207 21-238 2-223 (224)
24 PRK10725 fructose-1-P/6-phosph 100.0 2.7E-30 5.8E-35 190.9 18.6 182 20-208 3-186 (188)
25 TIGR02254 YjjG/YfnB HAD superf 100.0 3.1E-30 6.8E-35 195.8 18.9 201 22-230 1-219 (224)
26 PRK06698 bifunctional 5'-methy 100.0 9E-30 1.9E-34 211.3 21.3 214 19-239 238-455 (459)
27 PLN02919 haloacid dehalogenase 100.0 2.2E-29 4.7E-34 224.9 23.9 219 19-242 72-296 (1057)
28 TIGR01990 bPGM beta-phosphoglu 100.0 1.5E-29 3.2E-34 186.5 18.3 177 24-207 1-184 (185)
29 PRK14988 GMP/IMP nucleotidase; 100.0 8.1E-30 1.7E-34 192.4 16.3 130 105-239 90-220 (224)
30 TIGR01428 HAD_type_II 2-haloal 100.0 2.1E-29 4.6E-34 187.5 14.9 106 106-211 90-195 (198)
31 TIGR02252 DREG-2 REG-2-like, H 100.0 2.8E-28 6.1E-33 182.2 18.0 179 23-206 1-203 (203)
32 PF13419 HAD_2: Haloacid dehal 100.0 6.9E-29 1.5E-33 181.3 14.0 174 25-207 1-176 (176)
33 PRK10748 flavin mononucleotide 100.0 3.9E-28 8.4E-33 185.2 17.3 206 19-231 7-234 (238)
34 COG1011 Predicted hydrolase (H 100.0 8.1E-28 1.8E-32 183.1 17.3 130 106-238 97-227 (229)
35 PLN02811 hydrolase 100.0 1.2E-27 2.5E-32 180.7 17.5 200 29-235 1-210 (220)
36 TIGR02247 HAD-1A3-hyp Epoxide 100.0 1.8E-27 3.9E-32 178.9 14.2 181 22-210 2-198 (211)
37 TIGR01548 HAD-SF-IA-hyp1 haloa 99.9 4.7E-26 1E-30 169.2 18.1 173 23-200 1-197 (197)
38 TIGR01509 HAD-SF-IA-v3 haloaci 99.9 9.2E-26 2E-30 166.0 18.2 100 107-207 84-183 (183)
39 TIGR01993 Pyr-5-nucltdase pyri 99.9 3.3E-26 7E-31 168.4 12.8 170 23-207 1-184 (184)
40 KOG2914 Predicted haloacid-hal 99.9 5.7E-25 1.2E-29 162.0 18.6 204 20-230 8-217 (222)
41 PHA02597 30.2 hypothetical pro 99.9 1.3E-25 2.8E-30 167.0 13.8 188 21-231 1-194 (197)
42 PRK09456 ?-D-glucose-1-phospha 99.9 2E-25 4.3E-30 166.0 14.6 107 107-213 83-190 (199)
43 KOG3085 Predicted hydrolase (H 99.9 4.7E-25 1E-29 162.9 13.5 189 18-211 3-216 (237)
44 TIGR01549 HAD-SF-IA-v1 haloaci 99.9 3.3E-24 7.2E-29 153.2 16.1 154 24-201 1-154 (154)
45 TIGR00338 serB phosphoserine p 99.9 1.1E-23 2.5E-28 159.2 18.1 188 19-229 11-211 (219)
46 PLN02954 phosphoserine phospha 99.9 8.6E-24 1.9E-28 160.4 17.1 194 19-230 9-218 (224)
47 PRK08942 D,D-heptose 1,7-bisph 99.9 3.3E-24 7.2E-29 157.0 13.8 130 106-239 27-178 (181)
48 TIGR00213 GmhB_yaeD D,D-heptos 99.9 9.8E-24 2.1E-28 153.7 14.5 124 106-231 24-174 (176)
49 PRK06769 hypothetical protein; 99.9 3.8E-24 8.3E-29 154.9 11.5 126 106-231 26-167 (173)
50 TIGR01691 enolase-ppase 2,3-di 99.9 1.5E-22 3.3E-27 150.9 19.2 141 87-230 74-219 (220)
51 TIGR01491 HAD-SF-IB-PSPlk HAD- 99.9 1.1E-22 2.3E-27 151.9 15.6 105 106-210 78-192 (201)
52 PRK11133 serB phosphoserine ph 99.9 2.2E-22 4.8E-27 158.2 17.6 198 18-237 106-315 (322)
53 TIGR01493 HAD-SF-IA-v2 Haloaci 99.9 1.1E-23 2.5E-28 153.7 9.2 164 24-200 1-175 (175)
54 PRK09552 mtnX 2-hydroxy-3-keto 99.9 4.1E-22 8.9E-27 150.3 14.7 196 23-241 4-216 (219)
55 TIGR01656 Histidinol-ppas hist 99.9 1.7E-22 3.8E-27 142.7 10.4 103 107-210 26-147 (147)
56 TIGR01672 AphA HAD superfamily 99.9 3.4E-21 7.4E-26 144.7 16.5 148 24-213 65-216 (237)
57 TIGR01685 MDP-1 magnesium-depe 99.9 1E-22 2.3E-27 145.7 7.8 111 105-215 42-164 (174)
58 PRK13582 thrH phosphoserine ph 99.9 2.5E-21 5.4E-26 144.9 14.6 130 105-241 65-199 (205)
59 TIGR01662 HAD-SF-IIIA HAD-supe 99.9 2.7E-21 5.8E-26 134.5 13.6 98 107-208 24-131 (132)
60 TIGR01261 hisB_Nterm histidino 99.9 2E-21 4.3E-26 138.4 13.0 103 106-210 27-149 (161)
61 KOG3109 Haloacid dehalogenase- 99.9 1.7E-20 3.7E-25 134.0 12.8 196 20-230 13-222 (244)
62 TIGR01664 DNA-3'-Pase DNA 3'-p 99.8 7.9E-20 1.7E-24 131.1 12.8 97 109-207 43-161 (166)
63 TIGR03333 salvage_mtnX 2-hydro 99.8 1.5E-19 3.3E-24 135.8 14.3 130 106-239 68-210 (214)
64 TIGR01670 YrbI-phosphatas 3-de 99.8 1.3E-19 2.8E-24 128.8 11.1 113 116-241 36-149 (154)
65 TIGR02726 phenyl_P_delta pheny 99.8 1.3E-19 2.8E-24 129.6 11.0 105 115-232 41-145 (169)
66 cd01427 HAD_like Haloacid deha 99.8 1.7E-19 3.6E-24 126.2 11.3 103 105-207 21-139 (139)
67 TIGR01489 DKMTPPase-SF 2,3-dik 99.8 4.6E-19 1E-23 130.9 14.1 95 106-203 70-184 (188)
68 TIGR02137 HSK-PSP phosphoserin 99.8 3.9E-19 8.5E-24 131.6 13.3 124 106-240 66-198 (203)
69 COG0560 SerB Phosphoserine pho 99.8 3.7E-18 8.1E-23 126.9 14.3 101 107-207 76-186 (212)
70 TIGR01458 HAD-SF-IIA-hyp3 HAD- 99.8 7.9E-20 1.7E-24 140.7 4.8 123 109-231 121-250 (257)
71 TIGR01452 PGP_euk phosphoglyco 99.8 1.3E-19 2.8E-24 141.5 6.0 121 109-230 144-278 (279)
72 TIGR01668 YqeG_hyp_ppase HAD s 99.8 5.8E-18 1.3E-22 122.3 12.8 99 107-214 42-142 (170)
73 TIGR01490 HAD-SF-IB-hyp1 HAD-s 99.8 1.5E-17 3.4E-22 124.1 14.5 101 107-207 86-197 (202)
74 PRK05446 imidazole glycerol-ph 99.8 8.9E-18 1.9E-22 133.0 13.7 103 106-210 28-150 (354)
75 PF00702 Hydrolase: haloacid d 99.8 9.9E-18 2.2E-22 126.3 11.6 90 107-201 126-215 (215)
76 TIGR01488 HAD-SF-IB Haloacid D 99.8 5.1E-17 1.1E-21 118.8 14.7 96 105-200 70-177 (177)
77 TIGR01681 HAD-SF-IIIC HAD-supe 99.7 9.6E-18 2.1E-22 115.3 9.5 88 108-199 29-126 (128)
78 PRK09484 3-deoxy-D-manno-octul 99.7 1.8E-17 4E-22 121.1 10.8 101 116-229 56-156 (183)
79 PRK10530 pyridoxal phosphate ( 99.7 1.2E-17 2.5E-22 130.5 10.1 127 110-240 139-270 (272)
80 PRK11009 aphA acid phosphatase 99.7 5.5E-17 1.2E-21 121.9 13.2 99 105-212 111-215 (237)
81 PRK10444 UMP phosphatase; Prov 99.7 2E-18 4.4E-23 131.7 3.9 72 160-231 170-245 (248)
82 PRK11590 hypothetical protein; 99.7 9.8E-16 2.1E-20 114.8 18.2 175 21-207 5-201 (211)
83 COG2179 Predicted hydrolase of 99.7 7.1E-17 1.5E-21 111.0 10.8 91 109-208 47-138 (175)
84 PHA02530 pseT polynucleotide k 99.7 8.4E-17 1.8E-21 127.3 12.4 105 106-210 185-298 (300)
85 PRK01158 phosphoglycolate phos 99.7 5.3E-18 1.1E-22 129.2 5.0 108 127-240 118-228 (230)
86 PLN02645 phosphoglycolate phos 99.7 6.4E-18 1.4E-22 133.7 4.9 120 117-238 179-308 (311)
87 TIGR01457 HAD-SF-IIA-hyp2 HAD- 99.7 5.1E-17 1.1E-21 124.6 7.2 119 110-230 123-248 (249)
88 PF06888 Put_Phosphatase: Puta 99.7 3.6E-15 7.8E-20 111.5 15.6 113 105-217 68-206 (234)
89 COG0241 HisB Histidinol phosph 99.7 3.2E-15 7E-20 106.5 13.7 124 106-231 29-172 (181)
90 COG0647 NagD Predicted sugar p 99.7 2.3E-15 4.9E-20 114.6 13.0 71 161-231 187-261 (269)
91 COG4229 Predicted enolase-phos 99.6 2.2E-14 4.7E-19 99.9 14.2 121 106-229 101-224 (229)
92 TIGR01686 FkbH FkbH-like domai 99.6 3.8E-15 8.3E-20 118.4 10.5 91 108-203 31-125 (320)
93 PRK15126 thiamin pyrimidine py 99.6 1.1E-15 2.3E-20 119.3 6.3 81 160-244 183-265 (272)
94 smart00577 CPDc catalytic doma 99.6 1.8E-15 3.9E-20 106.9 6.7 95 106-204 43-138 (148)
95 TIGR01482 SPP-subfamily Sucros 99.6 1.6E-15 3.5E-20 115.1 6.0 110 127-240 110-224 (225)
96 COG0561 Cof Predicted hydrolas 99.6 1.9E-15 4.1E-20 117.5 6.3 79 160-242 184-262 (264)
97 PRK10513 sugar phosphate phosp 99.6 1.1E-15 2.3E-20 119.3 4.2 78 160-241 191-268 (270)
98 TIGR01544 HAD-SF-IE haloacid d 99.6 1.5E-13 3.3E-18 105.0 15.7 131 105-235 118-271 (277)
99 PF13242 Hydrolase_like: HAD-h 99.6 7.4E-15 1.6E-19 91.3 6.7 70 162-231 2-75 (75)
100 TIGR01663 PNK-3'Pase polynucle 99.6 3.1E-14 6.8E-19 118.4 11.9 92 109-202 198-305 (526)
101 PRK08238 hypothetical protein; 99.6 2.6E-13 5.6E-18 112.4 16.9 99 106-211 70-168 (479)
102 TIGR01487 SPP-like sucrose-pho 99.6 2.2E-15 4.8E-20 113.5 4.1 106 126-236 109-214 (215)
103 PRK10976 putative hydrolase; P 99.5 2.3E-15 5E-20 117.1 3.2 78 160-241 185-264 (266)
104 PTZ00445 p36-lilke protein; Pr 99.5 1.1E-13 2.5E-18 99.9 10.9 103 107-209 74-206 (219)
105 PF12689 Acid_PPase: Acid Phos 99.5 6.3E-14 1.4E-18 99.6 9.3 104 105-213 42-156 (169)
106 TIGR01545 YfhB_g-proteo haloac 99.5 3.5E-12 7.6E-17 95.2 18.2 118 84-207 74-200 (210)
107 COG1778 Low specificity phosph 99.5 1.9E-14 4.2E-19 97.9 5.3 101 116-229 43-143 (170)
108 PRK00192 mannosyl-3-phosphogly 99.5 2.3E-14 4.9E-19 111.8 6.4 116 119-240 143-269 (273)
109 PLN02887 hydrolase family prot 99.5 1.6E-14 3.6E-19 121.6 5.4 77 160-240 502-578 (580)
110 PRK03669 mannosyl-3-phosphogly 99.5 5.5E-14 1.2E-18 109.5 7.0 84 159-242 181-269 (271)
111 TIGR02244 HAD-IG-Ncltidse HAD 99.5 2.3E-12 5E-17 101.7 13.6 105 106-210 182-325 (343)
112 KOG2882 p-Nitrophenyl phosphat 99.4 6E-13 1.3E-17 100.6 8.8 70 161-230 221-298 (306)
113 TIGR00099 Cof-subfamily Cof su 99.4 2.2E-13 4.8E-18 105.4 6.7 73 160-236 183-255 (256)
114 KOG3120 Predicted haloacid deh 99.4 3E-12 6.4E-17 92.2 11.5 117 105-221 81-223 (256)
115 TIGR02471 sucr_syn_bact_C sucr 99.4 1.1E-12 2.3E-17 100.3 9.2 110 125-240 113-234 (236)
116 KOG1615 Phosphoserine phosphat 99.4 6.6E-12 1.4E-16 88.7 12.0 93 105-199 85-191 (227)
117 PF12710 HAD: haloacid dehalog 99.4 1.5E-12 3.3E-17 96.4 8.8 87 111-198 92-192 (192)
118 TIGR01533 lipo_e_P4 5'-nucleot 99.4 1.5E-11 3.3E-16 94.1 13.2 86 106-198 116-205 (266)
119 TIGR01459 HAD-SF-IIA-hyp4 HAD- 99.4 3.5E-12 7.6E-17 97.7 8.8 91 107-202 23-116 (242)
120 PF09419 PGP_phosphatase: Mito 99.4 1.4E-11 3.1E-16 87.2 10.9 92 109-210 60-166 (168)
121 TIGR01456 CECR5 HAD-superfamil 99.3 3.4E-11 7.5E-16 95.8 14.1 70 161-230 230-315 (321)
122 PF08282 Hydrolase_3: haloacid 99.3 2.6E-13 5.6E-18 104.7 1.8 73 161-237 182-254 (254)
123 PF08645 PNK3P: Polynucleotide 99.3 1.2E-11 2.5E-16 88.1 9.9 93 110-204 31-152 (159)
124 TIGR01460 HAD-SF-IIA Haloacid 99.3 1.3E-12 2.7E-17 99.6 5.2 50 161-210 185-236 (236)
125 TIGR01459 HAD-SF-IIA-hyp4 HAD- 99.3 9.3E-13 2E-17 100.9 4.3 98 110-208 140-241 (242)
126 TIGR01485 SPP_plant-cyano sucr 99.3 4.6E-11 9.9E-16 92.0 12.5 112 125-240 120-246 (249)
127 TIGR01684 viral_ppase viral ph 99.3 3.8E-11 8.2E-16 91.7 11.3 62 107-168 144-206 (301)
128 COG4359 Uncharacterized conser 99.3 1.5E-10 3.3E-15 81.1 12.4 93 104-202 69-180 (220)
129 TIGR01525 ATPase-IB_hvy heavy 99.3 4.1E-11 8.8E-16 102.4 11.4 116 107-237 383-499 (556)
130 TIGR02463 MPGP_rel mannosyl-3- 99.3 5E-12 1.1E-16 95.7 5.1 68 133-205 148-219 (221)
131 TIGR01512 ATPase-IB2_Cd heavy 99.3 3E-11 6.5E-16 102.6 10.0 111 107-231 361-474 (536)
132 TIGR01486 HAD-SF-IIB-MPGP mann 99.3 3.7E-12 8.1E-17 98.5 4.0 80 161-240 172-255 (256)
133 KOG3040 Predicted sugar phosph 99.2 1.3E-11 2.8E-16 88.1 4.8 70 161-230 178-251 (262)
134 TIGR02251 HIF-SF_euk Dullard-l 99.2 2.5E-11 5.4E-16 86.9 5.4 100 106-209 40-140 (162)
135 TIGR01522 ATPase-IIA2_Ca golgi 99.1 5.2E-10 1.1E-14 100.3 10.4 120 108-230 528-665 (884)
136 PHA03398 viral phosphatase sup 99.1 1.4E-09 3E-14 83.3 10.8 85 111-195 151-267 (303)
137 TIGR01511 ATPase-IB1_Cu copper 99.1 1.1E-09 2.4E-14 93.6 10.7 108 107-230 404-513 (562)
138 PF06941 NT5C: 5' nucleotidase 99.0 2.4E-09 5.1E-14 79.1 10.0 103 105-230 70-180 (191)
139 COG4087 Soluble P-type ATPase 99.0 3.4E-09 7.3E-14 70.2 9.1 121 106-239 28-148 (152)
140 PRK10671 copA copper exporting 99.0 2.9E-09 6.3E-14 95.2 11.2 113 108-237 650-764 (834)
141 COG4996 Predicted phosphatase 99.0 2E-09 4.4E-14 71.1 7.5 87 106-199 39-134 (164)
142 PRK14502 bifunctional mannosyl 99.0 1.8E-09 3.9E-14 91.7 7.7 49 163-211 611-661 (694)
143 TIGR02461 osmo_MPG_phos mannos 99.0 6.7E-10 1.4E-14 84.0 4.4 43 163-205 179-223 (225)
144 PRK10187 trehalose-6-phosphate 98.9 3.7E-09 7.9E-14 82.0 7.3 71 161-241 170-244 (266)
145 KOG2630 Enolase-phosphatase E- 98.9 1.1E-07 2.5E-12 69.4 13.6 123 107-231 122-248 (254)
146 TIGR01675 plant-AP plant acid 98.9 1.4E-07 3E-12 70.5 14.0 101 105-207 117-221 (229)
147 TIGR01484 HAD-SF-IIB HAD-super 98.9 1.6E-09 3.6E-14 80.9 3.6 45 161-205 159-203 (204)
148 TIGR00685 T6PP trehalose-phosp 98.9 2.2E-09 4.7E-14 82.4 4.0 70 164-240 166-242 (244)
149 PLN02382 probable sucrose-phos 98.8 4.6E-08 9.9E-13 80.4 10.2 82 161-244 171-263 (413)
150 PRK11033 zntA zinc/cadmium/mer 98.8 1E-07 2.2E-12 84.1 12.3 102 108-226 568-669 (741)
151 PLN02177 glycerol-3-phosphate 98.8 2.9E-07 6.2E-12 77.0 14.1 93 109-206 111-213 (497)
152 TIGR01116 ATPase-IIA1_Ca sarco 98.7 8.5E-08 1.8E-12 86.6 10.9 119 108-230 537-677 (917)
153 PF05116 S6PP: Sucrose-6F-phos 98.7 6.2E-08 1.4E-12 74.3 7.7 77 161-238 161-243 (247)
154 PF03767 Acid_phosphat_B: HAD 98.7 2.4E-08 5.2E-13 75.5 4.7 99 106-208 113-222 (229)
155 PF05761 5_nucleotid: 5' nucle 98.7 5.9E-07 1.3E-11 74.0 13.0 103 108-210 183-326 (448)
156 TIGR01497 kdpB K+-transporting 98.7 1.7E-07 3.6E-12 81.0 10.2 105 108-227 446-550 (675)
157 smart00775 LNS2 LNS2 domain. T 98.7 5.5E-07 1.2E-11 64.1 11.1 93 109-203 28-141 (157)
158 PRK14010 potassium-transportin 98.7 2.6E-07 5.5E-12 79.9 10.9 105 108-227 441-545 (673)
159 PTZ00174 phosphomannomutase; P 98.7 1.7E-09 3.7E-14 83.1 -2.1 46 159-208 182-231 (247)
160 PRK12702 mannosyl-3-phosphogly 98.7 4.5E-07 9.6E-12 69.9 10.8 45 163-207 206-252 (302)
161 TIGR01680 Veg_Stor_Prot vegeta 98.6 1.4E-06 3E-11 66.4 13.1 103 105-210 142-251 (275)
162 PRK01122 potassium-transportin 98.6 2.9E-07 6.3E-12 79.7 10.6 105 108-227 445-549 (679)
163 PF13344 Hydrolase_6: Haloacid 98.6 5E-07 1.1E-11 59.2 9.1 85 107-202 13-100 (101)
164 PLN02423 phosphomannomutase 98.5 1.3E-08 2.8E-13 78.0 -0.2 46 160-210 184-233 (245)
165 COG2217 ZntA Cation transport 98.5 7.3E-07 1.6E-11 77.4 10.3 106 107-227 536-641 (713)
166 TIGR01647 ATPase-IIIA_H plasma 98.5 1.5E-06 3.1E-11 77.2 11.8 114 108-228 442-577 (755)
167 TIGR01517 ATPase-IIB_Ca plasma 98.5 1.3E-06 2.9E-11 79.3 11.0 120 108-230 579-716 (941)
168 PRK15122 magnesium-transportin 98.5 1.6E-06 3.5E-11 78.1 11.4 114 108-227 550-679 (903)
169 TIGR01524 ATPase-IIIB_Mg magne 98.5 1.5E-06 3.3E-11 78.1 11.2 114 108-227 515-644 (867)
170 TIGR01523 ATPase-IID_K-Na pota 98.5 1.6E-06 3.5E-11 79.3 11.4 120 108-230 646-793 (1053)
171 PRK10517 magnesium-transportin 98.5 1.7E-06 3.8E-11 77.9 11.1 115 107-227 549-679 (902)
172 PF11019 DUF2608: Protein of u 98.4 3.1E-05 6.8E-10 59.4 15.9 104 108-211 81-212 (252)
173 COG3700 AphA Acid phosphatase 98.4 2.1E-06 4.6E-11 60.3 8.5 97 107-210 113-213 (237)
174 PRK14501 putative bifunctional 98.4 4.8E-07 1E-11 80.1 6.5 72 161-241 653-724 (726)
175 COG2503 Predicted secreted aci 98.4 3.5E-06 7.5E-11 62.3 9.7 87 105-198 119-210 (274)
176 PLN02645 phosphoglycolate phos 98.3 5.4E-06 1.2E-10 66.0 10.1 90 108-206 44-136 (311)
177 COG0474 MgtA Cation transport 98.3 4.6E-06 9.9E-11 75.4 10.4 117 107-226 546-680 (917)
178 TIGR01106 ATPase-IIC_X-K sodiu 98.3 5.7E-06 1.2E-10 75.6 10.9 117 108-227 568-726 (997)
179 TIGR02250 FCP1_euk FCP1-like p 98.2 7.6E-06 1.6E-10 58.1 7.3 86 105-196 55-142 (156)
180 PF05152 DUF705: Protein of un 98.2 4.8E-05 1E-09 58.0 11.3 86 110-195 144-261 (297)
181 PLN02205 alpha,alpha-trehalose 98.1 4.1E-05 8.9E-10 68.5 11.6 74 161-243 758-847 (854)
182 KOG0202 Ca2+ transporting ATPa 98.1 4E-05 8.8E-10 66.4 9.9 117 107-226 583-719 (972)
183 KOG0207 Cation transport ATPas 98.0 5E-05 1.1E-09 66.4 10.4 109 107-230 722-832 (951)
184 TIGR01689 EcbF-BcbF capsule bi 98.0 4.3E-05 9.3E-10 51.9 7.9 48 108-157 24-86 (126)
185 PLN02580 trehalose-phosphatase 98.0 2.3E-05 5E-10 63.3 7.0 72 163-242 299-378 (384)
186 TIGR01494 ATPase_P-type ATPase 98.0 8.9E-05 1.9E-09 63.1 11.0 97 108-227 347-443 (499)
187 COG5663 Uncharacterized conser 98.0 9E-05 2E-09 51.7 8.8 97 107-216 71-169 (194)
188 TIGR01652 ATPase-Plipid phosph 98.0 2.1E-05 4.6E-10 72.6 7.3 122 108-232 631-816 (1057)
189 TIGR01657 P-ATPase-V P-type AT 97.9 0.00014 2.9E-09 67.3 12.0 41 108-148 656-696 (1054)
190 PF08235 LNS2: LNS2 (Lipin/Ned 97.9 0.00017 3.6E-09 50.7 9.3 93 108-203 27-141 (157)
191 COG3882 FkbH Predicted enzyme 97.9 0.00016 3.6E-09 59.0 10.3 91 107-202 254-348 (574)
192 COG5610 Predicted hydrolase (H 97.8 0.00013 2.8E-09 59.2 7.7 98 110-207 101-201 (635)
193 COG4030 Uncharacterized protei 97.7 0.0031 6.8E-08 46.7 13.2 42 105-147 80-121 (315)
194 PLN03190 aminophospholipid tra 97.7 9.2E-05 2E-09 68.6 6.4 40 108-147 726-765 (1178)
195 PLN02499 glycerol-3-phosphate 97.7 0.00071 1.5E-08 56.2 10.7 80 116-199 101-190 (498)
196 TIGR02245 HAD_IIID1 HAD-superf 97.7 0.00047 1E-08 50.6 8.6 92 107-203 44-151 (195)
197 PLN02151 trehalose-phosphatase 97.5 0.00033 7.1E-09 56.1 6.7 71 164-242 268-346 (354)
198 PLN03017 trehalose-phosphatase 97.5 0.00036 7.9E-09 56.1 6.5 72 164-242 282-360 (366)
199 PF03031 NIF: NLI interacting 97.5 0.00026 5.7E-09 50.6 5.2 87 106-196 34-121 (159)
200 COG2216 KdpB High-affinity K+ 97.4 0.00053 1.1E-08 56.7 6.7 90 109-210 448-537 (681)
201 COG3769 Predicted hydrolase (H 97.4 0.0012 2.6E-08 48.5 7.9 88 111-205 137-233 (274)
202 TIGR01452 PGP_euk phosphoglyco 97.4 0.0019 4.2E-08 50.7 9.6 88 108-205 18-108 (279)
203 KOG2961 Predicted hydrolase (H 97.3 0.0035 7.5E-08 43.3 9.0 96 106-211 59-170 (190)
204 KOG2470 Similar to IMP-GMP spe 97.3 0.0005 1.1E-08 53.9 5.6 100 109-208 241-375 (510)
205 KOG0204 Calcium transporting A 97.3 0.0022 4.9E-08 56.2 9.0 113 108-226 647-780 (1034)
206 TIGR01658 EYA-cons_domain eyes 97.2 0.0031 6.7E-08 47.3 8.2 80 128-211 179-260 (274)
207 KOG0210 P-type ATPase [Inorgan 96.8 0.003 6.6E-08 54.2 6.1 48 182-232 782-829 (1051)
208 KOG2469 IMP-GMP specific 5'-nu 96.8 0.026 5.6E-07 45.6 10.5 101 110-210 200-335 (424)
209 KOG2134 Polynucleotide kinase 96.5 0.016 3.6E-07 46.4 7.8 95 108-204 104-229 (422)
210 PRK10444 UMP phosphatase; Prov 96.3 0.05 1.1E-06 41.9 9.5 50 108-157 17-69 (248)
211 PF05822 UMPH-1: Pyrimidine 5' 96.2 0.017 3.8E-07 43.8 6.3 131 105-235 87-239 (246)
212 KOG0206 P-type ATPase [General 96.2 0.012 2.7E-07 54.1 6.2 41 107-147 650-690 (1151)
213 TIGR01457 HAD-SF-IIA-hyp2 HAD- 96.0 0.021 4.6E-07 44.0 5.8 49 109-157 18-69 (249)
214 KOG3128 Uncharacterized conser 95.8 0.041 9E-07 41.6 6.2 95 106-200 136-247 (298)
215 TIGR01458 HAD-SF-IIA-hyp3 HAD- 95.7 0.017 3.6E-07 44.8 4.3 50 108-157 21-73 (257)
216 PF06189 5-nucleotidase: 5'-nu 95.7 0.12 2.5E-06 39.6 8.3 72 124-210 186-260 (264)
217 COG4502 5'(3')-deoxyribonucleo 95.7 0.059 1.3E-06 36.9 6.1 99 106-231 66-170 (180)
218 KOG0209 P-type ATPase [Inorgan 94.8 0.076 1.6E-06 47.0 5.9 41 107-147 674-714 (1160)
219 TIGR01460 HAD-SF-IIA Haloacid 94.7 0.47 1E-05 36.3 9.6 86 107-203 13-102 (236)
220 COG1877 OtsB Trehalose-6-phosp 94.7 0.11 2.4E-06 40.2 6.0 37 107-143 39-76 (266)
221 KOG3107 Predicted haloacid deh 94.6 0.15 3.3E-06 40.9 6.6 79 127-210 373-453 (468)
222 PRK00192 mannosyl-3-phosphogly 94.6 0.097 2.1E-06 41.0 5.6 42 110-151 23-64 (273)
223 KOG3040 Predicted sugar phosph 94.4 0.33 7.3E-06 35.8 7.4 40 109-148 24-66 (262)
224 TIGR02461 osmo_MPG_phos mannos 94.1 0.16 3.5E-06 38.5 5.8 40 110-149 17-56 (225)
225 TIGR01487 SPP-like sucrose-pho 93.8 0.16 3.4E-06 38.2 5.2 41 109-149 19-59 (215)
226 PRK10513 sugar phosphate phosp 93.5 0.29 6.4E-06 38.1 6.5 41 109-149 21-61 (270)
227 TIGR02463 MPGP_rel mannosyl-3- 93.4 0.23 5.1E-06 37.4 5.5 36 113-148 21-56 (221)
228 PRK15126 thiamin pyrimidine py 93.3 0.23 4.9E-06 38.9 5.6 42 109-150 20-61 (272)
229 PRK01158 phosphoglycolate phos 93.3 0.23 5E-06 37.6 5.4 42 109-150 21-62 (230)
230 TIGR00099 Cof-subfamily Cof su 93.2 0.27 5.8E-06 38.0 5.7 41 109-149 17-57 (256)
231 KOG0323 TFIIF-interacting CTD 93.2 0.38 8.1E-06 41.9 6.9 84 106-198 199-287 (635)
232 PRK12702 mannosyl-3-phosphogly 93.1 0.3 6.5E-06 38.4 5.7 43 108-150 18-60 (302)
233 TIGR01456 CECR5 HAD-superfamil 92.9 0.54 1.2E-05 37.8 7.2 85 109-206 17-109 (321)
234 PRK10976 putative hydrolase; P 92.8 0.29 6.3E-06 38.0 5.4 42 109-150 20-61 (266)
235 KOG0203 Na+/K+ ATPase, alpha s 92.5 0.068 1.5E-06 47.4 1.6 101 107-207 589-731 (1019)
236 PLN03064 alpha,alpha-trehalose 92.5 0.19 4.2E-06 45.9 4.5 40 107-146 621-661 (934)
237 PRK10530 pyridoxal phosphate ( 92.4 0.36 7.8E-06 37.6 5.6 41 109-149 21-61 (272)
238 TIGR01482 SPP-subfamily Sucros 92.4 0.35 7.5E-06 36.5 5.3 41 109-149 16-56 (225)
239 COG0561 Cof Predicted hydrolas 92.4 0.34 7.3E-06 37.7 5.3 43 107-149 19-61 (264)
240 TIGR01486 HAD-SF-IIB-MPGP mann 92.3 0.42 9.1E-06 37.0 5.7 38 112-149 20-57 (256)
241 KOG4549 Magnesium-dependent ph 92.0 1.4 3.1E-05 29.8 6.9 84 106-194 42-135 (144)
242 PF03031 NIF: NLI interacting 91.9 0.08 1.7E-06 37.7 1.2 16 23-38 1-16 (159)
243 PF08282 Hydrolase_3: haloacid 91.7 0.43 9.4E-06 36.3 5.2 42 107-148 14-55 (254)
244 PLN03063 alpha,alpha-trehalose 91.5 0.58 1.3E-05 42.5 6.3 39 107-145 531-570 (797)
245 PRK03669 mannosyl-3-phosphogly 90.9 0.58 1.3E-05 36.6 5.2 38 111-148 27-64 (271)
246 KOG0208 Cation transport ATPas 90.3 0.9 1.9E-05 41.4 6.2 45 107-151 704-748 (1140)
247 PF13580 SIS_2: SIS domain; PD 89.9 4.9 0.00011 27.8 8.8 99 110-208 21-137 (138)
248 PF05690 ThiG: Thiazole biosyn 89.3 8 0.00017 29.4 9.7 97 107-210 103-206 (247)
249 KOG2882 p-Nitrophenyl phosphat 88.0 0.96 2.1E-05 35.5 4.3 43 107-149 37-82 (306)
250 TIGR02468 sucrsPsyn_pln sucros 87.9 3.2 6.9E-05 38.8 8.1 72 135-209 923-1002(1050)
251 PF06014 DUF910: Bacterial pro 87.4 0.37 8.1E-06 28.0 1.4 25 170-198 7-31 (62)
252 KOG2116 Protein involved in pl 87.2 6.8 0.00015 34.4 9.1 91 112-204 562-673 (738)
253 TIGR01484 HAD-SF-IIB HAD-super 87.1 1.7 3.7E-05 32.2 5.2 38 109-146 18-55 (204)
254 COG0731 Fe-S oxidoreductases [ 86.3 3.5 7.5E-05 32.6 6.5 39 105-143 89-128 (296)
255 COG4850 Uncharacterized conser 86.0 5.9 0.00013 31.6 7.5 84 106-195 194-292 (373)
256 KOG0205 Plasma membrane H+-tra 85.3 5.1 0.00011 35.3 7.4 117 108-228 492-627 (942)
257 PF02358 Trehalose_PPase: Treh 85.0 1.3 2.8E-05 33.8 3.7 63 163-227 163-233 (235)
258 KOG3189 Phosphomannomutase [Li 83.9 0.92 2E-05 33.3 2.2 29 23-51 12-40 (252)
259 TIGR00236 wecB UDP-N-acetylglu 83.0 15 0.00033 30.0 9.4 96 113-210 16-119 (365)
260 cd04728 ThiG Thiazole synthase 82.4 20 0.00044 27.5 10.3 96 107-210 103-206 (248)
261 TIGR01485 SPP_plant-cyano sucr 82.2 4 8.6E-05 31.4 5.4 38 111-148 24-61 (249)
262 PLN02887 hydrolase family prot 82.1 3.1 6.8E-05 36.4 5.2 41 108-148 325-365 (580)
263 PRK10187 trehalose-6-phosphate 82.1 2.7 5.8E-05 32.8 4.4 40 107-146 35-75 (266)
264 PRK14502 bifunctional mannosyl 81.9 3.7 8.1E-05 36.4 5.5 40 110-149 435-474 (694)
265 PTZ00174 phosphomannomutase; P 81.4 3.5 7.7E-05 31.7 4.9 36 109-144 23-58 (247)
266 smart00577 CPDc catalytic doma 80.6 1.1 2.3E-05 31.5 1.6 16 23-38 3-18 (148)
267 COG3769 Predicted hydrolase (H 80.4 3.8 8.3E-05 30.8 4.3 36 113-148 28-63 (274)
268 COG5083 SMP2 Uncharacterized p 80.2 2.2 4.7E-05 35.4 3.3 18 20-37 373-390 (580)
269 TIGR02251 HIF-SF_euk Dullard-l 79.2 1.2 2.6E-05 31.9 1.5 16 23-38 2-17 (162)
270 PRK11840 bifunctional sulfur c 78.2 34 0.00074 27.6 11.8 96 107-210 177-280 (326)
271 COG4483 Uncharacterized protei 77.0 3.2 6.8E-05 24.3 2.4 26 170-199 7-32 (68)
272 CHL00162 thiG thiamin biosynth 76.6 33 0.00072 26.6 10.7 97 107-210 117-220 (267)
273 PRK13762 tRNA-modifying enzyme 75.8 14 0.00031 29.8 6.8 31 106-136 140-170 (322)
274 PF04413 Glycos_transf_N: 3-De 74.8 2.6 5.6E-05 31.0 2.2 73 114-195 108-185 (186)
275 PF10307 DUF2410: Hypothetical 74.1 34 0.00073 25.4 8.9 85 113-200 59-152 (197)
276 PRK00208 thiG thiazole synthas 73.3 40 0.00088 26.0 10.5 96 107-210 103-206 (250)
277 TIGR02250 FCP1_euk FCP1-like p 72.8 2.2 4.8E-05 30.3 1.5 17 22-38 6-22 (156)
278 KOG2832 TFIIF-interacting CTD 72.2 20 0.00042 29.3 6.5 80 109-192 215-294 (393)
279 PRK00994 F420-dependent methyl 72.1 42 0.00091 25.7 10.2 87 117-209 23-117 (277)
280 TIGR00715 precor6x_red precorr 72.0 45 0.00097 26.0 8.9 58 171-239 190-253 (256)
281 TIGR02471 sucr_syn_bact_C sucr 70.1 13 0.00028 28.3 5.3 33 115-148 22-54 (236)
282 PF03332 PMM: Eukaryotic phosp 69.2 7.2 0.00016 29.3 3.5 43 113-156 1-43 (220)
283 PF04413 Glycos_transf_N: 3-De 67.3 37 0.00079 24.9 6.9 87 113-210 37-127 (186)
284 KOG1618 Predicted phosphatase 65.9 7.1 0.00015 31.2 3.0 50 161-210 268-342 (389)
285 COG0052 RpsB Ribosomal protein 65.4 62 0.0013 25.0 9.4 45 182-230 157-204 (252)
286 smart00540 LEM in nuclear memb 64.9 7.7 0.00017 20.9 2.2 32 114-145 9-40 (44)
287 PF06437 ISN1: IMP-specific 5' 64.9 10 0.00022 31.1 3.7 42 167-210 351-401 (408)
288 COG2099 CobK Precorrin-6x redu 64.8 64 0.0014 25.0 8.2 99 107-210 111-231 (257)
289 PF14336 DUF4392: Domain of un 64.3 51 0.0011 26.3 7.5 26 110-135 62-87 (291)
290 COG2022 ThiG Uncharacterized e 63.9 64 0.0014 24.7 9.4 97 107-210 110-213 (262)
291 PF02571 CbiJ: Precorrin-6x re 63.3 69 0.0015 24.8 8.4 119 107-237 112-247 (249)
292 PF02593 dTMP_synthase: Thymid 63.2 21 0.00046 26.9 5.0 92 108-203 59-156 (217)
293 PF10113 Fibrillarin_2: Fibril 63.0 19 0.00041 29.9 4.9 43 168-210 209-255 (505)
294 TIGR02329 propionate_PrpR prop 62.5 1E+02 0.0022 27.0 9.5 87 112-210 85-172 (526)
295 TIGR02495 NrdG2 anaerobic ribo 62.3 25 0.00054 25.7 5.3 30 107-136 73-102 (191)
296 KOG1618 Predicted phosphatase 62.2 18 0.00038 29.1 4.5 85 107-205 50-143 (389)
297 PRK06100 DNA polymerase III su 60.9 45 0.00097 23.0 5.8 89 118-211 7-96 (132)
298 PF06506 PrpR_N: Propionate ca 60.1 18 0.00038 26.2 4.1 84 112-210 65-152 (176)
299 COG5426 Uncharacterized membra 59.5 31 0.00066 25.5 5.0 83 106-191 27-120 (254)
300 TIGR03470 HpnH hopanoid biosyn 59.3 93 0.002 25.1 9.2 29 107-135 83-111 (318)
301 TIGR03365 Bsubt_queE 7-cyano-7 59.2 79 0.0017 24.2 8.0 28 109-136 85-112 (238)
302 TIGR00877 purD phosphoribosyla 59.1 1E+02 0.0022 25.9 9.0 110 111-230 51-164 (423)
303 PF04007 DUF354: Protein of un 58.6 34 0.00074 27.8 5.8 91 113-210 16-112 (335)
304 COG0761 lytB 4-Hydroxy-3-methy 58.3 92 0.002 24.7 8.0 91 109-212 169-268 (294)
305 PF13911 AhpC-TSA_2: AhpC/TSA 57.6 45 0.00098 21.9 5.5 34 115-148 4-37 (115)
306 PLN02580 trehalose-phosphatase 57.4 20 0.00044 29.7 4.4 38 107-145 140-177 (384)
307 PF02350 Epimerase_2: UDP-N-ac 56.8 26 0.00057 28.6 5.0 89 119-210 2-100 (346)
308 KOG1605 TFIIF-interacting CTD 56.6 6.6 0.00014 30.5 1.4 93 107-203 130-223 (262)
309 cd05015 SIS_PGI_1 Phosphogluco 56.3 70 0.0015 22.7 7.0 84 123-207 48-136 (158)
310 PF00578 AhpC-TSA: AhpC/TSA fa 56.2 45 0.00097 22.0 5.4 38 111-148 46-83 (124)
311 PRK10076 pyruvate formate lyas 56.1 28 0.0006 26.3 4.6 35 109-143 51-88 (213)
312 PRK11449 putative deoxyribonuc 55.0 99 0.0021 24.1 8.7 98 112-209 20-135 (258)
313 PHA02575 1 deoxynucleoside mon 54.8 94 0.002 23.7 7.4 52 180-231 154-214 (227)
314 COG0381 WecB UDP-N-acetylgluco 54.7 1.1E+02 0.0025 25.3 8.1 91 114-210 20-125 (383)
315 KOG0541 Alkyl hydroperoxide re 54.2 54 0.0012 23.4 5.3 44 108-151 62-106 (171)
316 PLN03017 trehalose-phosphatase 54.0 27 0.00058 28.8 4.5 34 108-142 133-166 (366)
317 COG0505 CarA Carbamoylphosphat 53.4 1E+02 0.0022 25.3 7.4 109 112-229 113-229 (368)
318 PLN02151 trehalose-phosphatase 53.4 24 0.00052 28.9 4.1 37 107-144 119-155 (354)
319 TIGR02826 RNR_activ_nrdG3 anae 53.2 27 0.00059 24.5 3.9 26 110-135 74-99 (147)
320 cd05008 SIS_GlmS_GlmD_1 SIS (S 53.1 23 0.0005 23.6 3.6 29 110-138 59-87 (126)
321 cd01994 Alpha_ANH_like_IV This 52.9 92 0.002 23.1 7.9 34 182-215 89-128 (194)
322 cd05014 SIS_Kpsf KpsF-like pro 52.9 21 0.00046 23.9 3.4 28 109-136 59-86 (128)
323 TIGR02886 spore_II_AA anti-sig 52.2 58 0.0013 21.0 5.3 37 114-152 61-97 (106)
324 KOG0208 Cation transport ATPas 52.0 63 0.0014 30.4 6.7 89 109-202 648-744 (1140)
325 COG2241 CobL Precorrin-6B meth 51.7 1E+02 0.0022 23.2 9.5 77 124-210 68-149 (210)
326 TIGR01101 V_ATP_synt_F vacuola 51.3 72 0.0016 21.4 6.0 63 111-175 46-110 (115)
327 cd05007 SIS_Etherase N-acetylm 50.1 1.2E+02 0.0026 23.6 12.2 94 116-210 42-154 (257)
328 KOG1605 TFIIF-interacting CTD 50.0 4.2 9E-05 31.6 -0.6 19 20-38 87-105 (262)
329 PF02358 Trehalose_PPase: Treh 49.4 31 0.00067 26.3 4.1 37 106-142 17-54 (235)
330 COG4821 Uncharacterized protei 49.3 1.1E+02 0.0024 22.9 10.0 98 113-210 27-140 (243)
331 cd06537 CIDE_N_B CIDE_N domain 48.4 16 0.00035 22.6 1.9 17 22-38 39-55 (81)
332 cd06539 CIDE_N_A CIDE_N domain 48.2 17 0.00036 22.4 1.9 17 22-38 40-56 (78)
333 PLN02423 phosphomannomutase 48.0 38 0.00082 26.1 4.4 35 109-144 25-59 (245)
334 smart00266 CAD Domains present 47.9 17 0.00036 22.2 1.9 17 22-38 38-54 (74)
335 PF03102 NeuB: NeuB family; I 47.6 1.3E+02 0.0028 23.2 7.9 91 113-207 102-200 (241)
336 COG1225 Bcp Peroxiredoxin [Pos 47.4 92 0.002 22.2 5.8 40 113-154 53-92 (157)
337 KOG0207 Cation transport ATPas 47.3 2.5E+02 0.0054 26.4 10.6 22 16-37 576-597 (951)
338 KOG2900 Biotin synthase [Coenz 47.2 32 0.0007 26.5 3.7 51 109-159 152-202 (380)
339 cd01445 TST_Repeats Thiosulfat 47.1 86 0.0019 21.6 5.7 49 162-210 75-131 (138)
340 PRK14501 putative bifunctional 47.0 35 0.00077 31.1 4.6 39 109-147 515-554 (726)
341 PF03603 DNA_III_psi: DNA poly 47.0 63 0.0014 22.2 4.8 104 118-230 7-110 (128)
342 COG1064 AdhP Zn-dependent alco 46.8 58 0.0012 26.6 5.3 57 172-228 157-218 (339)
343 cd05017 SIS_PGI_PMI_1 The memb 46.8 61 0.0013 21.5 4.8 34 110-145 56-89 (119)
344 PF02350 Epimerase_2: UDP-N-ac 46.7 1.6E+02 0.0035 24.1 10.8 100 112-226 201-302 (346)
345 cd05710 SIS_1 A subgroup of th 46.4 33 0.00071 23.0 3.4 27 110-136 60-86 (120)
346 PF07287 DUF1446: Protein of u 46.4 1.4E+02 0.0031 24.6 7.5 37 112-148 59-100 (362)
347 cd04906 ACT_ThrD-I_1 First of 46.1 43 0.00093 20.8 3.7 24 111-134 53-76 (85)
348 PF01380 SIS: SIS domain SIS d 46.1 40 0.00087 22.5 3.9 30 110-139 66-95 (131)
349 PF14213 DUF4325: Domain of un 44.8 45 0.00097 20.1 3.5 30 23-52 18-47 (74)
350 PRK14021 bifunctional shikimat 44.8 2.2E+02 0.0048 25.1 10.6 95 111-209 195-303 (542)
351 PF05240 APOBEC_C: APOBEC-like 44.7 33 0.00071 19.6 2.6 23 111-133 2-24 (55)
352 cd07043 STAS_anti-anti-sigma_f 44.5 76 0.0017 19.7 4.9 38 113-152 59-96 (99)
353 PF02222 ATP-grasp: ATP-grasp 44.4 99 0.0021 22.4 5.8 60 174-240 1-61 (172)
354 COG5190 FCP1 TFIIF-interacting 44.1 85 0.0018 26.2 5.9 81 108-192 252-332 (390)
355 PRK03692 putative UDP-N-acetyl 44.0 1.4E+02 0.003 23.1 6.8 73 113-191 94-167 (243)
356 COG2897 SseA Rhodanese-related 43.9 76 0.0017 25.2 5.5 51 161-211 69-125 (285)
357 PRK15424 propionate catabolism 43.9 2.3E+02 0.0049 25.0 9.3 87 112-210 95-182 (538)
358 TIGR00377 ant_ant_sig anti-ant 43.9 66 0.0014 20.6 4.6 37 114-152 65-101 (108)
359 cd01615 CIDE_N CIDE_N domain, 43.8 21 0.00045 22.0 1.9 17 22-38 40-56 (78)
360 cd08573 GDPD_GDE1 Glycerophosp 43.6 64 0.0014 25.1 5.1 35 114-148 218-252 (258)
361 PHA01735 hypothetical protein 43.5 71 0.0015 19.1 5.0 33 107-139 29-61 (76)
362 TIGR03278 methan_mark_10 putat 43.5 51 0.0011 27.6 4.7 42 107-148 85-130 (404)
363 PF05673 DUF815: Protein of un 43.5 1.4E+02 0.0031 23.2 6.6 33 113-145 69-101 (249)
364 COG0191 Fba Fructose/tagatose 43.5 1.7E+02 0.0036 23.3 9.2 96 113-211 6-108 (286)
365 PF09269 DUF1967: Domain of un 43.1 25 0.00055 21.0 2.2 20 171-190 46-65 (69)
366 cd03018 PRX_AhpE_like Peroxire 42.9 79 0.0017 21.7 5.1 37 112-148 50-86 (149)
367 TIGR03568 NeuC_NnaA UDP-N-acet 42.4 1.5E+02 0.0032 24.5 7.2 32 179-210 92-126 (365)
368 cd00733 GlyRS_alpha_core Class 42.4 37 0.00079 26.2 3.3 40 167-207 88-130 (279)
369 cd06536 CIDE_N_ICAD CIDE_N dom 42.2 23 0.00049 22.0 1.9 16 23-38 43-58 (80)
370 PRK10425 DNase TatD; Provision 42.2 1.6E+02 0.0036 22.9 8.9 34 110-143 14-47 (258)
371 cd01766 Ufm1 Urm1-like ubiquit 41.9 57 0.0012 19.7 3.4 40 163-202 25-64 (82)
372 TIGR00640 acid_CoA_mut_C methy 41.8 65 0.0014 22.1 4.3 22 113-134 42-63 (132)
373 PRK08304 stage V sporulation p 41.7 91 0.002 25.4 5.6 66 145-210 32-110 (337)
374 COG0678 AHP1 Peroxiredoxin [Po 41.3 1.2E+02 0.0027 21.5 5.5 41 109-149 57-98 (165)
375 TIGR03127 RuMP_HxlB 6-phospho 40.9 41 0.00088 24.3 3.5 30 110-139 85-114 (179)
376 cd03017 PRX_BCP Peroxiredoxin 40.7 87 0.0019 21.2 5.0 36 113-148 46-81 (140)
377 PF00875 DNA_photolyase: DNA p 40.7 34 0.00073 24.3 2.9 36 113-148 55-90 (165)
378 PRK09348 glyQ glycyl-tRNA synt 40.4 40 0.00087 26.1 3.3 39 168-207 93-134 (283)
379 cd04795 SIS SIS domain. SIS (S 40.4 40 0.00088 20.5 3.0 22 110-131 60-81 (87)
380 cd05013 SIS_RpiR RpiR-like pro 40.1 43 0.00094 22.5 3.4 26 111-136 74-99 (139)
381 PRK06856 DNA polymerase III su 39.6 79 0.0017 21.7 4.4 103 119-230 7-109 (128)
382 cd08612 GDPD_GDE4 Glycerophosp 39.6 71 0.0015 25.4 4.9 35 113-148 250-284 (300)
383 TIGR03595 Obg_CgtA_exten Obg f 39.4 44 0.00095 20.0 2.8 21 170-190 45-65 (69)
384 KOG3189 Phosphomannomutase [Li 39.1 72 0.0016 23.9 4.3 48 107-156 27-74 (252)
385 PRK05301 pyrroloquinoline quin 39.0 80 0.0017 26.1 5.3 43 106-148 72-116 (378)
386 TIGR03151 enACPred_II putative 38.8 2.1E+02 0.0045 23.0 10.1 88 114-210 99-192 (307)
387 PRK13790 phosphoribosylamine-- 38.7 2.3E+02 0.0049 23.5 9.7 110 111-230 14-126 (379)
388 cd06538 CIDE_N_FSP27 CIDE_N do 38.6 28 0.00061 21.5 1.9 16 23-38 40-55 (79)
389 COG1436 NtpG Archaeal/vacuolar 38.6 1.1E+02 0.0025 20.0 5.9 45 112-156 34-78 (104)
390 cd05212 NAD_bind_m-THF_DH_Cycl 38.5 1.4E+02 0.0029 20.9 6.3 24 168-191 13-38 (140)
391 cd05006 SIS_GmhA Phosphoheptos 38.3 42 0.00091 24.2 3.2 26 110-135 114-139 (177)
392 PRK13789 phosphoribosylamine-- 38.3 2.5E+02 0.0054 23.8 8.2 117 111-239 55-174 (426)
393 KOG0622 Ornithine decarboxylas 38.2 1.5E+02 0.0032 25.0 6.3 70 127-210 83-154 (448)
394 TIGR02109 PQQ_syn_pqqE coenzym 38.1 93 0.002 25.4 5.5 28 107-134 64-91 (358)
395 TIGR00388 glyQ glycyl-tRNA syn 38.1 47 0.001 25.8 3.4 39 168-207 90-131 (293)
396 PRK08185 hypothetical protein; 38.0 2.1E+02 0.0045 22.8 7.5 95 114-211 2-101 (283)
397 PF02017 CIDE-N: CIDE-N domain 37.8 25 0.00054 21.7 1.6 17 22-38 40-56 (78)
398 PRK15317 alkyl hydroperoxide r 37.6 2.3E+02 0.005 24.7 8.0 29 181-209 211-242 (517)
399 PF08620 RPAP1_C: RPAP1-like, 37.2 14 0.00029 22.5 0.4 10 25-34 3-12 (73)
400 PRK13125 trpA tryptophan synth 36.7 2E+02 0.0042 22.2 10.3 94 111-208 116-214 (244)
401 PLN02591 tryptophan synthase 36.6 2E+02 0.0044 22.3 10.3 99 109-209 116-219 (250)
402 cd06533 Glyco_transf_WecG_TagA 36.6 1.6E+02 0.0035 21.2 6.8 27 113-140 35-61 (171)
403 PF08484 Methyltransf_14: C-me 36.4 68 0.0015 22.9 3.9 46 111-158 55-101 (160)
404 PRK13937 phosphoheptose isomer 36.3 53 0.0012 24.1 3.5 27 110-136 119-145 (188)
405 PF12990 DUF3874: Domain of un 36.3 96 0.0021 18.9 3.9 34 113-148 28-61 (73)
406 PLN02205 alpha,alpha-trehalose 36.1 68 0.0015 30.0 4.7 38 108-145 616-654 (854)
407 PF06901 FrpC: RTX iron-regula 36.0 20 0.00044 26.2 1.2 15 22-36 58-72 (271)
408 PF12261 T_hemolysin: Thermost 36.0 1.1E+02 0.0024 22.4 4.9 33 115-149 107-139 (179)
409 PF03020 LEM: LEM domain; Int 36.0 4.3 9.2E-05 21.8 -1.7 31 115-145 10-40 (43)
410 PRK05294 carB carbamoyl phosph 35.9 3.4E+02 0.0074 26.3 9.3 58 168-230 130-187 (1066)
411 COG0263 ProB Glutamate 5-kinas 35.8 2.2E+02 0.0047 23.5 6.8 23 112-134 32-54 (369)
412 TIGR01369 CPSaseII_lrg carbamo 35.7 2.9E+02 0.0064 26.7 8.8 120 114-240 30-194 (1050)
413 COG2044 Predicted peroxiredoxi 35.3 67 0.0015 21.7 3.4 27 107-133 58-84 (120)
414 PF05116 S6PP: Sucrose-6F-phos 35.2 86 0.0019 24.2 4.6 42 115-157 26-67 (247)
415 cd05005 SIS_PHI Hexulose-6-pho 35.1 56 0.0012 23.6 3.4 27 110-136 88-114 (179)
416 TIGR01161 purK phosphoribosyla 34.9 2.5E+02 0.0054 22.9 7.8 56 170-230 102-158 (352)
417 KOG1154 Gamma-glutamyl kinase 34.6 82 0.0018 24.3 4.1 32 113-144 37-68 (285)
418 TIGR03140 AhpF alkyl hydropero 34.5 2.8E+02 0.0061 24.1 8.0 30 179-208 210-242 (515)
419 COG1015 DeoB Phosphopentomutas 34.4 2.7E+02 0.0059 23.1 9.0 84 110-193 223-337 (397)
420 cd08585 GDPD_like_3 Glyceropho 34.3 75 0.0016 24.3 4.1 37 114-151 198-235 (237)
421 PRK05294 carB carbamoyl phosph 34.2 4.1E+02 0.0089 25.8 9.5 58 168-230 671-728 (1066)
422 COG1834 N-Dimethylarginine dim 34.2 1.4E+02 0.003 23.5 5.4 71 115-199 42-146 (267)
423 PF04123 DUF373: Domain of unk 33.9 1.7E+02 0.0037 24.0 6.1 35 171-207 91-127 (344)
424 cd03013 PRX5_like Peroxiredoxi 33.9 1.3E+02 0.0028 21.2 5.0 36 112-147 52-88 (155)
425 cd06589 GH31 The enzymes of gl 33.8 55 0.0012 25.5 3.4 28 108-135 63-90 (265)
426 cd02072 Glm_B12_BD B12 binding 33.8 73 0.0016 21.8 3.5 19 114-132 40-58 (128)
427 COG0821 gcpE 1-hydroxy-2-methy 33.8 47 0.001 26.9 2.9 100 111-217 36-140 (361)
428 PF01113 DapB_N: Dihydrodipico 33.7 95 0.0021 20.9 4.1 36 110-145 77-112 (124)
429 cd07041 STAS_RsbR_RsbS_like Su 33.5 1.3E+02 0.0029 19.3 5.6 35 113-149 62-96 (109)
430 TIGR00696 wecB_tagA_cpsF bacte 33.4 1.9E+02 0.0041 21.1 6.1 73 113-191 37-110 (177)
431 PF01740 STAS: STAS domain; I 33.4 96 0.0021 20.3 4.1 37 113-151 69-105 (117)
432 TIGR00441 gmhA phosphoheptose 33.3 56 0.0012 23.0 3.1 27 110-136 92-118 (154)
433 cd08579 GDPD_memb_like Glycero 33.2 1.1E+02 0.0024 22.9 4.8 34 114-148 180-213 (220)
434 cd08582 GDPD_like_2 Glyceropho 33.2 1E+02 0.0023 23.3 4.8 35 113-148 190-224 (233)
435 PRK10422 lipopolysaccharide co 33.0 2.7E+02 0.0058 22.7 10.6 87 111-211 202-291 (352)
436 PRK00885 phosphoribosylamine-- 32.4 3E+02 0.0066 23.1 8.9 116 111-239 49-168 (420)
437 PF08444 Gly_acyl_tr_C: Aralky 32.3 1.2E+02 0.0025 19.4 3.9 35 113-147 41-75 (89)
438 TIGR00221 nagA N-acetylglucosa 32.0 3E+02 0.0065 22.9 9.0 35 110-144 176-211 (380)
439 PRK08005 epimerase; Validated 31.8 2.3E+02 0.0049 21.4 9.7 93 111-207 93-190 (210)
440 PRK00973 glucose-6-phosphate i 31.6 3.4E+02 0.0073 23.3 8.6 85 125-210 109-198 (446)
441 cd06595 GH31_xylosidase_XylS-l 31.5 64 0.0014 25.6 3.4 26 108-133 71-96 (292)
442 cd08570 GDPD_YPL206cp_fungi Gl 31.3 1.2E+02 0.0027 22.9 4.9 35 113-148 193-227 (234)
443 PRK10671 copA copper exporting 30.9 27 0.00058 32.4 1.4 26 13-38 508-533 (834)
444 PRK11145 pflA pyruvate formate 30.9 59 0.0013 24.9 3.1 27 109-135 83-110 (246)
445 COG0656 ARA1 Aldo/keto reducta 30.8 2.7E+02 0.006 22.1 8.1 63 112-179 121-184 (280)
446 TIGR00664 DNA_III_psi DNA poly 30.8 1.2E+02 0.0026 21.0 4.1 84 119-209 8-91 (133)
447 cd06565 GH20_GcnA-like Glycosy 30.7 2.8E+02 0.0061 22.2 6.9 35 109-144 58-92 (301)
448 COG1180 PflA Pyruvate-formate 30.7 52 0.0011 25.7 2.7 26 110-135 98-123 (260)
449 cd06844 STAS Sulphate Transpor 30.4 1.5E+02 0.0032 18.8 4.6 35 113-149 60-94 (100)
450 PRK00414 gmhA phosphoheptose i 30.4 77 0.0017 23.4 3.5 27 110-136 124-150 (192)
451 smart00481 POLIIIAc DNA polyme 30.3 88 0.0019 18.1 3.1 22 113-134 17-38 (67)
452 PF00532 Peripla_BP_1: Peripla 30.1 2.7E+02 0.0058 21.8 8.0 89 116-210 23-127 (279)
453 cd08564 GDPD_GsGDE_like Glycer 29.8 1.2E+02 0.0027 23.5 4.7 35 113-148 212-250 (265)
454 cd08583 PI-PLCc_GDPD_SF_unchar 29.8 1.3E+02 0.0028 22.9 4.8 34 114-148 195-228 (237)
455 TIGR02494 PFLE_PFLC glycyl-rad 29.7 1.1E+02 0.0023 24.2 4.5 28 108-135 137-165 (295)
456 KOG0023 Alcohol dehydrogenase, 29.7 2.9E+02 0.0063 22.6 6.6 64 172-235 172-241 (360)
457 cd01948 EAL EAL domain. This d 29.6 2.4E+02 0.0052 21.0 8.0 87 112-205 133-227 (240)
458 COG1454 EutG Alcohol dehydroge 29.5 3.4E+02 0.0073 22.7 7.5 85 107-194 10-101 (377)
459 TIGR00262 trpA tryptophan synt 29.5 2.7E+02 0.0059 21.7 10.1 95 108-209 124-228 (256)
460 PRK10017 colanic acid biosynth 29.4 3.6E+02 0.0077 23.0 11.7 116 113-241 262-390 (426)
461 COG1058 CinA Predicted nucleot 29.2 63 0.0014 25.2 2.9 46 165-210 21-69 (255)
462 cd02971 PRX_family Peroxiredox 29.2 1.8E+02 0.0038 19.6 5.0 35 111-145 43-77 (140)
463 PLN02334 ribulose-phosphate 3- 29.1 2.6E+02 0.0056 21.2 11.4 97 111-210 102-204 (229)
464 COG0540 PyrB Aspartate carbamo 29.0 3.1E+02 0.0068 22.2 10.0 95 112-210 90-193 (316)
465 COG1117 PstB ABC-type phosphat 28.9 92 0.002 23.8 3.6 22 113-135 188-209 (253)
466 PRK12815 carB carbamoyl phosph 28.9 4.1E+02 0.0089 25.8 8.6 120 114-240 31-195 (1068)
467 PF04230 PS_pyruv_trans: Polys 28.9 2.6E+02 0.0056 21.1 6.8 26 185-210 260-285 (286)
468 cd08555 PI-PLCc_GDPD_SF Cataly 28.8 1.6E+02 0.0034 21.3 4.9 35 113-148 138-173 (179)
469 PF12076 Wax2_C: WAX2 C-termin 28.7 2.2E+02 0.0049 20.4 7.5 53 183-239 57-110 (164)
470 PF07453 NUMOD1: NUMOD1 domain 28.5 83 0.0018 15.8 2.5 26 23-52 2-27 (37)
471 TIGR00190 thiC thiamine biosyn 28.5 1.8E+02 0.0039 24.4 5.4 86 109-211 159-266 (423)
472 TIGR02370 pyl_corrinoid methyl 28.4 2.5E+02 0.0054 20.8 9.0 83 117-203 105-188 (197)
473 KOG0781 Signal recognition par 28.4 1.4E+02 0.003 25.8 4.8 113 113-226 455-583 (587)
474 cd08563 GDPD_TtGDE_like Glycer 28.4 1.4E+02 0.003 22.6 4.7 34 114-148 190-223 (230)
475 COG0752 GlyQ Glycyl-tRNA synth 28.4 78 0.0017 24.4 3.1 44 163-207 85-135 (298)
476 COG1663 LpxK Tetraacyldisaccha 28.4 3.3E+02 0.0072 22.3 7.2 27 110-136 63-89 (336)
477 TIGR02765 crypto_DASH cryptoch 28.4 85 0.0018 26.5 3.8 8 113-120 84-91 (429)
478 PLN02257 phosphoribosylamine-- 28.3 3.7E+02 0.0081 22.9 8.4 109 111-230 49-161 (434)
479 TIGR01858 tag_bisphos_ald clas 28.3 3.1E+02 0.0067 21.8 10.1 96 113-211 4-105 (282)
480 KOG0391 SNF2 family DNA-depend 28.2 3.1E+02 0.0067 27.1 7.2 87 113-208 1265-1353(1958)
481 PF13686 DrsE_2: DsrE/DsrF/Drs 28.2 64 0.0014 22.7 2.6 24 110-133 90-113 (148)
482 cd08574 GDPD_GDE_2_3_6 Glycero 28.0 1.4E+02 0.003 23.1 4.7 34 114-148 213-246 (252)
483 cd02970 PRX_like2 Peroxiredoxi 28.0 1.8E+02 0.004 19.7 5.0 37 112-148 45-81 (149)
484 PRK13938 phosphoheptose isomer 28.0 88 0.0019 23.2 3.4 27 110-136 126-152 (196)
485 COG4018 Uncharacterized protei 27.7 60 0.0013 26.3 2.5 41 170-210 211-255 (505)
486 COG0602 NrdG Organic radical a 27.5 79 0.0017 23.8 3.1 26 110-135 85-110 (212)
487 PLN02588 glycerol-3-phosphate 27.4 34 0.00074 29.5 1.3 18 22-39 50-67 (525)
488 cd06591 GH31_xylosidase_XylS X 27.4 81 0.0018 25.4 3.4 24 108-131 63-86 (319)
489 TIGR02845 spore_V_AD stage V s 27.4 2.6E+02 0.0057 22.8 6.1 65 146-210 27-104 (327)
490 cd06594 GH31_glucosidase_YihQ 27.3 82 0.0018 25.4 3.4 25 108-132 68-92 (317)
491 COG3919 Predicted ATP-grasp en 27.1 1.2E+02 0.0027 24.3 4.1 121 107-232 53-178 (415)
492 PRK09454 ugpQ cytoplasmic glyc 27.0 1.5E+02 0.0033 22.7 4.8 34 114-148 199-232 (249)
493 PRK13352 thiamine biosynthesis 26.8 1.9E+02 0.0042 24.3 5.3 85 110-211 163-269 (431)
494 KOG0780 Signal recognition par 26.6 4E+02 0.0086 22.6 8.1 44 151-195 184-228 (483)
495 TIGR02493 PFLA pyruvate format 26.5 1.8E+02 0.0038 22.0 5.0 37 108-144 77-118 (235)
496 PF01116 F_bP_aldolase: Fructo 26.5 1.3E+02 0.0029 23.9 4.3 96 113-211 5-106 (287)
497 cd06599 GH31_glycosidase_Aec37 26.4 87 0.0019 25.2 3.4 26 107-132 69-94 (317)
498 PF12017 Tnp_P_element: Transp 26.3 1.6E+02 0.0035 22.7 4.6 14 115-128 200-213 (236)
499 TIGR00167 cbbA ketose-bisphosp 26.0 3.4E+02 0.0074 21.6 9.8 99 112-211 5-110 (288)
500 cd06597 GH31_transferase_CtsY 26.0 89 0.0019 25.5 3.4 24 109-132 83-106 (340)
No 1
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=100.00 E-value=4.8e-41 Score=257.57 Aligned_cols=242 Identities=85% Similarity=1.288 Sum_probs=202.6
Q ss_pred CccCCCCCcccccccccccCCcceEEEeCCCccccChhhHHHHHHHHHHHhcCCCCCCCchHHHHHHhcCCCHHHHHHHh
Q 025896 1 MTCSTGENSVESKDALAKLAPLEAVLFDVDGTLCDSDPLHHYAFREMLQEIGFNDGVPITEDFFVENIAGKHNIDIAKIL 80 (246)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~k~iifD~DGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (246)
|+++.+++++.+.++.....++|+|+||+||||+|+...+..++..+++++|...+.+.....+...+.|.+.......+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~k~viFDlDGTLiDs~~~~~~a~~~~~~~~g~~~g~~~~~~~~~~~~~G~~~~~~~~~~ 80 (248)
T PLN02770 1 MTVSSGENSVESKSSLSGLAPLEAVLFDVDGTLCDSDPLHYYAFREMLQEINFNGGVPITEEFFVENIAGKHNEDIALGL 80 (248)
T ss_pred CccccCcccccccccccccCccCEEEEcCCCccCcCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHcCCCCHHHHHHHH
Confidence 89999999988888888888999999999999999999999999999999965433445555555566687777777666
Q ss_pred CCCCchhhhhhHHHHHHHHHHHhhccCCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCC
Q 025896 81 FPDDLPRGLKFCEDKEAMFRKLASEQLKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDEC 160 (246)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~ 160 (246)
+.........+.......|.........++||+.++|++|+++|++++|+||.....++..++++|+.++|+.++++++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~~Fd~iv~~~~~ 160 (248)
T PLN02770 81 FPDDLERGLKFTDDKEALFRKLASEQLKPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLLGLSDFFQAVIIGSEC 160 (248)
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHhcCCcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCChhhCcEEEecCcC
Confidence 55421122223334445555544456889999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHcCCCCCcEEEEecChhhhHHHHhcCCCEEEEcCCCChhhhhccCCcEEecCCCChhhHHHHhhh
Q 025896 161 ERAKPFPDPYFKALEMLKVSKDHTFVFEDSVSGIKAGVAAGLPVVGLTTRNPEHVLLEANPTFLIKDYDDPKLWSALEEL 240 (246)
Q Consensus 161 ~~~kp~~~~~~~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i~~~~el~~~~~l~~~ 240 (246)
...||+|+.|..++++++++|++|++|||+..|+++|+++|+.+|++.+++....+....|+++++++.|+.+...++.+
T Consensus 161 ~~~KP~p~~~~~a~~~~~~~~~~~l~vgDs~~Di~aA~~aGi~~i~v~~g~~~~~l~~~~a~~vi~~~~e~~~~~~~~~~ 240 (248)
T PLN02770 161 EHAKPHPDPYLKALEVLKVSKDHTFVFEDSVSGIKAGVAAGMPVVGLTTRNPESLLMEAKPTFLIKDYEDPKLWAALEEL 240 (248)
T ss_pred CCCCCChHHHHHHHHHhCCChhHEEEEcCCHHHHHHHHHCCCEEEEEeCCCCHHHHhhcCCCEEeccchhhHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999988655556567899999999997777777666
Q ss_pred hc
Q 025896 241 DK 242 (246)
Q Consensus 241 ~~ 242 (246)
.+
T Consensus 241 ~~ 242 (248)
T PLN02770 241 DQ 242 (248)
T ss_pred cc
Confidence 55
No 2
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=100.00 E-value=3.9e-35 Score=220.88 Aligned_cols=210 Identities=25% Similarity=0.352 Sum_probs=171.2
Q ss_pred CcceEEEeCCCccccChhhHHHHHHHHHHHhcCCCCCCCchHHHHHHhcCCCHHHHHHHhCCCCchhhhhhHHHHHHHHH
Q 025896 21 PLEAVLFDVDGTLCDSDPLHHYAFREMLQEIGFNDGVPITEDFFVENIAGKHNIDIAKILFPDDLPRGLKFCEDKEAMFR 100 (246)
Q Consensus 21 ~~k~iifD~DGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (246)
++|+|+||+||||+|+...+..++..++++++.. ..+...+. ...|.+..+.+..+. ......+...+...+.
T Consensus 2 ~~~~viFD~DGTL~ds~~~~~~a~~~~~~~~~~~---~~~~~~~~-~~~G~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 74 (214)
T PRK13288 2 KINTVLFDLDGTLINTNELIISSFLHTLKTYYPN---QYKREDVL-PFIGPSLHDTFSKID---ESKVEEMITTYREFNH 74 (214)
T ss_pred CccEEEEeCCCcCccCHHHHHHHHHHHHHHhCCC---CCCHHHHH-HHhCcCHHHHHHhcC---HHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999532 23444443 345777666665542 2233333344444444
Q ss_pred HHhhccCCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHcCCC
Q 025896 101 KLASEQLKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEMLKVS 180 (246)
Q Consensus 101 ~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~ 180 (246)
........++||+.++|+.|+++|++++|+||+....++..++.+|+..+|+.++++++....||+|+.+++++++++++
T Consensus 75 ~~~~~~~~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~p~~~~~~~~~~~~~ 154 (214)
T PRK13288 75 EHHDELVTEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLTGLDEFFDVVITLDDVEHAKPDPEPVLKALELLGAK 154 (214)
T ss_pred HhhhhhcccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChhceeEEEecCcCCCCCCCcHHHHHHHHHcCCC
Confidence 33334578999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEecChhhhHHHHhcCCCEEEEcCCC-ChhhhhccCCcEEecCCCChhhHHHHhh
Q 025896 181 KDHTFVFEDSVSGIKAGVAAGLPVVGLTTRN-PEHVLLEANPTFLIKDYDDPKLWSALEE 239 (246)
Q Consensus 181 ~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~-~~~~~~~~~~~~~i~~~~el~~~~~l~~ 239 (246)
|+++++|||+.+|+++|+++|+.++++.++. ...+..+..++++++++.+ +..++..
T Consensus 155 ~~~~~~iGDs~~Di~aa~~aG~~~i~v~~g~~~~~~l~~~~~~~~i~~~~~--l~~~i~~ 212 (214)
T PRK13288 155 PEEALMVGDNHHDILAGKNAGTKTAGVAWTIKGREYLEQYKPDFMLDKMSD--LLAIVGD 212 (214)
T ss_pred HHHEEEECCCHHHHHHHHHCCCeEEEEcCCCCCHHHHhhcCcCEEECCHHH--HHHHHhh
Confidence 9999999999999999999999999999884 4445555679999999999 5655543
No 3
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=100.00 E-value=5.7e-35 Score=224.04 Aligned_cols=210 Identities=20% Similarity=0.331 Sum_probs=171.9
Q ss_pred CCcceEEEeCCCccccCh-hhHHHHHHHHHHHhcCCCCCCCchHHHHHHhcCCCHHHHHHHhCCC--CchhhhhhHHHHH
Q 025896 20 APLEAVLFDVDGTLCDSD-PLHHYAFREMLQEIGFNDGVPITEDFFVENIAGKHNIDIAKILFPD--DLPRGLKFCEDKE 96 (246)
Q Consensus 20 ~~~k~iifD~DGTL~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 96 (246)
..+|+|+|||||||+|+. ..+..+|..+++++|+ ..+.......+.|.+....+..++.. .......+...+.
T Consensus 22 ~~~k~vIFDlDGTLvDS~~~~~~~a~~~~~~~~G~----~~~~~e~~~~~~G~~~~~~~~~l~~~~~~~~~~~~l~~~~~ 97 (260)
T PLN03243 22 CGWLGVVLEWEGVIVEDDSELERKAWRALAEEEGK----RPPPAFLLKRAEGMKNEQAISEVLCWSRDFLQMKRLAIRKE 97 (260)
T ss_pred CCceEEEEeCCCceeCCchHHHHHHHHHHHHHcCC----CCCHHHHHHHhcCCCHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 469999999999999996 5667899999999954 45555555567788888887777654 2333444444444
Q ss_pred HHHHHHhhccCCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHH
Q 025896 97 AMFRKLASEQLKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEM 176 (246)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~ 176 (246)
..+.........++||+.++|++|+++|++++|+||.....++..++++|+.++|+.++++++....||+|++|..++++
T Consensus 98 ~~~~~~~~~~~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~~Fd~ii~~~d~~~~KP~Pe~~~~a~~~ 177 (260)
T PLN03243 98 DLYEYMQGGLYRLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAVGMEGFFSVVLAAEDVYRGKPDPEMFMYAAER 177 (260)
T ss_pred HHHHHHHccCcccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHcCCHhhCcEEEecccCCCCCCCHHHHHHHHHH
Confidence 44433333457899999999999999999999999999999999999999999999999999998899999999999999
Q ss_pred cCCCCCcEEEEecChhhhHHHHhcCCCEEEEcCCCChhhhhccCCcEEecCCCChhhHH
Q 025896 177 LKVSKDHTFVFEDSVSGIKAGVAAGLPVVGLTTRNPEHVLLEANPTFLIKDYDDPKLWS 235 (246)
Q Consensus 177 ~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i~~~~el~~~~ 235 (246)
++++|++|++|||+.+|+++|+++|+.++++......... ..++++++++.++....
T Consensus 178 l~~~p~~~l~IgDs~~Di~aA~~aG~~~i~v~g~~~~~~l--~~ad~vi~~~~el~~~~ 234 (260)
T PLN03243 178 LGFIPERCIVFGNSNSSVEAAHDGCMKCVAVAGKHPVYEL--SAGDLVVRRLDDLSVVD 234 (260)
T ss_pred hCCChHHeEEEcCCHHHHHHHHHcCCEEEEEecCCchhhh--ccCCEEeCCHHHHHHHH
Confidence 9999999999999999999999999999999743333332 36899999999965443
No 4
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=100.00 E-value=3.7e-35 Score=222.12 Aligned_cols=212 Identities=19% Similarity=0.276 Sum_probs=168.6
Q ss_pred cCCcceEEEeCCCccccChhhHHHHHHHHHHHhcCCCCCCCchHHHHHHhcCCCHHHHHHHhCCC---CchhhhhhHHHH
Q 025896 19 LAPLEAVLFDVDGTLCDSDPLHHYAFREMLQEIGFNDGVPITEDFFVENIAGKHNIDIAKILFPD---DLPRGLKFCEDK 95 (246)
Q Consensus 19 ~~~~k~iifD~DGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 95 (246)
..++|+|+||+||||+|+...+..++.++++++|. ............|.........+... ............
T Consensus 4 ~~~~k~iiFD~DGTL~d~~~~~~~a~~~~~~~~g~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (222)
T PRK10826 4 PRQILAAIFDMDGLLIDSEPLWDRAELDVMASLGV----DISRREELPDTLGLRIDQVVDLWYARQPWNGPSRQEVVQRI 79 (222)
T ss_pred cccCcEEEEcCCCCCCcCHHHHHHHHHHHHHHCCC----CCCHHHHHHHhhCCCHHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 34589999999999999999999999999999954 34442333344465555444443222 112223333444
Q ss_pred HHHHHHHhhccCCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHH
Q 025896 96 EAMFRKLASEQLKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALE 175 (246)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~ 175 (246)
...+.........++||+.++|+.|+++|++++|+||.....++..++++++..+|+.+++++..+.+||+|+.++.+++
T Consensus 80 ~~~~~~~~~~~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~ 159 (222)
T PRK10826 80 IARVISLIEETRPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMFDLRDYFDALASAEKLPYSKPHPEVYLNCAA 159 (222)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhCcchhcccEEEEcccCCCCCCCHHHHHHHHH
Confidence 44444443446789999999999999999999999999999999999999999999999999998999999999999999
Q ss_pred HcCCCCCcEEEEecChhhhHHHHhcCCCEEEEcCCCChhhhhccCCcEEecCCCChhhH
Q 025896 176 MLKVSKDHTFVFEDSVSGIKAGVAAGLPVVGLTTRNPEHVLLEANPTFLIKDYDDPKLW 234 (246)
Q Consensus 176 ~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i~~~~el~~~ 234 (246)
++|++|++|++|||+.+|+++|+++|++++++.++....+.....++++++++.|+.-.
T Consensus 160 ~~~~~~~~~~~igDs~~Di~aA~~aG~~~i~v~~~~~~~~~~~~~~~~~~~~~~dl~~~ 218 (222)
T PRK10826 160 KLGVDPLTCVALEDSFNGMIAAKAARMRSIVVPAPEQQNDPRWALADVKLESLTELTAA 218 (222)
T ss_pred HcCCCHHHeEEEcCChhhHHHHHHcCCEEEEecCCccCchhhhhhhheeccCHHHHhhh
Confidence 99999999999999999999999999999999988655444445689999999995433
No 5
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=100.00 E-value=6.8e-35 Score=221.23 Aligned_cols=208 Identities=27% Similarity=0.312 Sum_probs=170.4
Q ss_pred CCcceEEEeCCCccccChhhHHHHHHHHHHHhcCCCCCCCchHHHHHHhcCCCHHHHHHHhCCC-CchhhhhhHHHHHHH
Q 025896 20 APLEAVLFDVDGTLCDSDPLHHYAFREMLQEIGFNDGVPITEDFFVENIAGKHNIDIAKILFPD-DLPRGLKFCEDKEAM 98 (246)
Q Consensus 20 ~~~k~iifD~DGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 98 (246)
.++|+|+||+||||+|+...+..++..+++++|.+ ..+.+.. ....|............. .......+...+...
T Consensus 10 ~~~k~viFD~DGTL~Ds~~~~~~a~~~~~~~~g~~---~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (229)
T PRK13226 10 RFPRAVLFDLDGTLLDSAPDMLATVNAMLAARGRA---PITLAQL-RPVVSKGARAMLAVAFPELDAAARDALIPEFLQR 85 (229)
T ss_pred ccCCEEEEcCcCccccCHHHHHHHHHHHHHHCCCC---CCCHHHH-HHHhhhHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence 45799999999999999999999999999999654 2344443 334466655555555443 333344555556666
Q ss_pred HHHHhhccCCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHcC
Q 025896 99 FRKLASEQLKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEMLK 178 (246)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~ 178 (246)
|.........++||+.++|++|+++|++++|+||++.......++++++..+|+.+++++..+..||+|+.|..+++++|
T Consensus 86 ~~~~~~~~~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~p~~~~~~~~~l~ 165 (229)
T PRK13226 86 YEALIGTQSQLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQLGWEQRCAVLIGGDTLAERKPHPLPLLVAAERIG 165 (229)
T ss_pred HHHhhhhcCeeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCchhcccEEEecCcCCCCCCCHHHHHHHHHHhC
Confidence 66554456789999999999999999999999999998899999999999999999888888889999999999999999
Q ss_pred CCCCcEEEEecChhhhHHHHhcCCCEEEEcCCCC--hhhhhccCCcEEecCCCCh
Q 025896 179 VSKDHTFVFEDSVSGIKAGVAAGLPVVGLTTRNP--EHVLLEANPTFLIKDYDDP 231 (246)
Q Consensus 179 ~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~--~~~~~~~~~~~~i~~~~el 231 (246)
++|++|++|||+.+|+.+|+++|+.++++.++.. ........++++++++.++
T Consensus 166 ~~p~~~l~IGDs~~Di~aA~~aG~~~i~v~~g~~~~~~~~~~~~~~~~i~~~~el 220 (229)
T PRK13226 166 VAPTDCVYVGDDERDILAARAAGMPSVAALWGYRLHDDDPLAWQADVLVEQPQLL 220 (229)
T ss_pred CChhhEEEeCCCHHHHHHHHHCCCcEEEEeecCCCCCcChhhcCCCeeeCCHHHH
Confidence 9999999999999999999999999999998853 2333446799999999994
No 6
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=100.00 E-value=2.4e-34 Score=216.66 Aligned_cols=212 Identities=29% Similarity=0.468 Sum_probs=176.2
Q ss_pred CCcceEEEeCCCccccChhhHHHHHHHHHHHhcCCCCCCCchHHHHHHhcCCCHHHHHHHhCCC-CchhhhhhHHHHHHH
Q 025896 20 APLEAVLFDVDGTLCDSDPLHHYAFREMLQEIGFNDGVPITEDFFVENIAGKHNIDIAKILFPD-DLPRGLKFCEDKEAM 98 (246)
Q Consensus 20 ~~~k~iifD~DGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 98 (246)
+++++|+||+||||+|+...+..++..+++.+|.. ....... ..+.|......+...... ...........+...
T Consensus 2 ~~~~~iiFDlDGTL~Ds~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (220)
T COG0546 2 MMIKAILFDLDGTLVDSAEDILRAFNAALAELGLP---PLDEEEI-RQLIGLGLDELIERLLGEADEEAAAELVERLREE 77 (220)
T ss_pred CCCCEEEEeCCCccccChHHHHHHHHHHHHHcCCC---CCCHHHH-HHHhcCCHHHHHHHHhccccchhHHHHHHHHHHH
Confidence 57899999999999999999999999999999654 1444444 444577777777776655 222222444444444
Q ss_pred HHHHhhcc--CCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHH
Q 025896 99 FRKLASEQ--LKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEM 176 (246)
Q Consensus 99 ~~~~~~~~--~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~ 176 (246)
+....... ..++||+.++|++|++.|++++|+||.+....+..++++|+..+|+.++++++....||+|..+..++++
T Consensus 78 ~~~~~~~~~~~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~gl~~~F~~i~g~~~~~~~KP~P~~l~~~~~~ 157 (220)
T COG0546 78 FLTAYAELLESRLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKALGLADYFDVIVGGDDVPPPKPDPEPLLLLLEK 157 (220)
T ss_pred HHHHHHhhccCccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHhCCccccceEEcCCCCCCCCcCHHHHHHHHHH
Confidence 55444333 5899999999999999999999999999999999999999999999999988889999999999999999
Q ss_pred cCCCCCcEEEEecChhhhHHHHhcCCCEEEEcCCCC-hhhhhccCCcEEecCCCChhhHHHH
Q 025896 177 LKVSKDHTFVFEDSVSGIKAGVAAGLPVVGLTTRNP-EHVLLEANPTFLIKDYDDPKLWSAL 237 (246)
Q Consensus 177 ~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~-~~~~~~~~~~~~i~~~~el~~~~~l 237 (246)
++++|++++||||+.+|+.+|+++|++++++.+|+. ........++++++++.| +...+
T Consensus 158 ~~~~~~~~l~VGDs~~Di~aA~~Ag~~~v~v~~g~~~~~~l~~~~~d~vi~~~~e--l~~~l 217 (220)
T COG0546 158 LGLDPEEALMVGDSLNDILAAKAAGVPAVGVTWGYNSREELAQAGADVVIDSLAE--LLALL 217 (220)
T ss_pred hCCChhheEEECCCHHHHHHHHHcCCCEEEEECCCCCCcchhhcCCCEEECCHHH--HHHHH
Confidence 999988999999999999999999999999999964 566677789999999999 44443
No 7
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=100.00 E-value=2.4e-34 Score=217.62 Aligned_cols=205 Identities=23% Similarity=0.328 Sum_probs=171.2
Q ss_pred cceEEEeCCCccccChhhHHHHHHHHHHHhcCCCCCCCchHHHHHHhcCCCHHHHHHHhCCC---CchhhhhhHHHHHHH
Q 025896 22 LEAVLFDVDGTLCDSDPLHHYAFREMLQEIGFNDGVPITEDFFVENIAGKHNIDIAKILFPD---DLPRGLKFCEDKEAM 98 (246)
Q Consensus 22 ~k~iifD~DGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 98 (246)
+|+|+||+||||+|+...+..++.++++++|. +.+.......+.|....+.++.+... .......+...+...
T Consensus 1 ~k~iiFD~DGTL~ds~~~~~~~~~~~~~~~g~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (220)
T TIGR03351 1 ISLVVLDMAGTTVDEDGLVYRALRQAVTAAGL----SPTPEEVQSAWMGQSKIEAIRALLALDGADEAEAQAAFADFEER 76 (220)
T ss_pred CcEEEEecCCCeeccCchHHHHHHHHHHHcCC----CCCHHHHHHhhcCCCHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999954 45555554546688878877777654 223344445555555
Q ss_pred HHHHhh-ccCCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCC--CcceEEEecCCCCCCCCChHHHHHHHH
Q 025896 99 FRKLAS-EQLKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLS--DFFQVVILGDECERAKPFPDPYFKALE 175 (246)
Q Consensus 99 ~~~~~~-~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~--~~f~~~~~~~~~~~~kp~~~~~~~~~~ 175 (246)
+..... ....++||+.++|+.|+++|++++|+||+....++..++++++. .+|+.++++++....||+|+.|..+++
T Consensus 77 ~~~~~~~~~~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~~l~~~~~f~~i~~~~~~~~~KP~p~~~~~a~~ 156 (220)
T TIGR03351 77 LAEAYDDGPPVALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKLGWTVGDDVDAVVCPSDVAAGRPAPDLILRAME 156 (220)
T ss_pred HHHHhcccCCccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHhhhhhhccCCEEEcCCcCCCCCCCHHHHHHHHH
Confidence 554432 34689999999999999999999999999999999999999998 999999999998889999999999999
Q ss_pred HcCCC-CCcEEEEecChhhhHHHHhcCCCE-EEEcCCC-ChhhhhccCCcEEecCCCC
Q 025896 176 MLKVS-KDHTFVFEDSVSGIKAGVAAGLPV-VGLTTRN-PEHVLLEANPTFLIKDYDD 230 (246)
Q Consensus 176 ~~~~~-~~~~~~igD~~~Di~~a~~~G~~~-i~v~~~~-~~~~~~~~~~~~~i~~~~e 230 (246)
++++. |++|++|||+.+|+++|+++|+.+ +++.++. .........++++++++.+
T Consensus 157 ~~~~~~~~~~~~igD~~~Di~aa~~aG~~~~i~~~~g~~~~~~~~~~~~~~~i~~~~~ 214 (220)
T TIGR03351 157 LTGVQDVQSVAVAGDTPNDLEAGINAGAGAVVGVLTGAHDAEELSRHPHTHVLDSVAD 214 (220)
T ss_pred HcCCCChhHeEEeCCCHHHHHHHHHCCCCeEEEEecCCCcHHHHhhcCCceeecCHHH
Confidence 99997 799999999999999999999999 8998874 4445555679999999988
No 8
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=100.00 E-value=3.3e-34 Score=226.90 Aligned_cols=209 Identities=20% Similarity=0.360 Sum_probs=177.3
Q ss_pred CcceEEEeCCCccccChh-hHHHHHHHHHHHhcCCCCCCCchHHHHHHhcCCCHHHHHHHhCCC--CchhhhhhHHHHHH
Q 025896 21 PLEAVLFDVDGTLCDSDP-LHHYAFREMLQEIGFNDGVPITEDFFVENIAGKHNIDIAKILFPD--DLPRGLKFCEDKEA 97 (246)
Q Consensus 21 ~~k~iifD~DGTL~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 97 (246)
..++|||||||||+|+.. .+..+|..+++++|+ ..........+.|.+....+..++.. .......+...+..
T Consensus 130 ~~~~VIFDlDGTLIDS~~~i~~~a~~~l~~e~G~----~~~~~e~~~~~~G~~~~~~l~~ll~~~~~~~~~e~l~~~~~~ 205 (381)
T PLN02575 130 GWLGAIFEWEGVIIEDNPDLENQAWLTLAQEEGK----SPPPAFILRRVEGMKNEQAISEVLCWSRDPAELRRMATRKEE 205 (381)
T ss_pred CCCEEEEcCcCcceeCHHHHHHHHHHHHHHHcCC----CCCHHHHHHHhcCCCHHHHHHHHhhccCCHHHHHHHHHHHHH
Confidence 689999999999999987 566799999999954 44555555567788888888877653 34445566666666
Q ss_pred HHHHHhhccCCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHc
Q 025896 98 MFRKLASEQLKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEML 177 (246)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~ 177 (246)
.|.........++||+.++|+.|+++|++++|+||.....++..++++|+.++|+.++++++....||+|+.|..+++++
T Consensus 206 ~y~~~~~~~~~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~lgL~~yFd~Iv~sddv~~~KP~Peifl~A~~~l 285 (381)
T PLN02575 206 IYQALQGGIYRLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSIGIRGFFSVIVAAEDVYRGKPDPEMFIYAAQLL 285 (381)
T ss_pred HHHHHhccCCCcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCHHHceEEEecCcCCCCCCCHHHHHHHHHHc
Confidence 77666555678999999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred CCCCCcEEEEecChhhhHHHHhcCCCEEEEcCCCChhhhhccCCcEEecCCCChhhHH
Q 025896 178 KVSKDHTFVFEDSVSGIKAGVAAGLPVVGLTTRNPEHVLLEANPTFLIKDYDDPKLWS 235 (246)
Q Consensus 178 ~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i~~~~el~~~~ 235 (246)
|+.|++|++|||+..|+++|+++|+.+|++.+++...+. ..++++++++.|+....
T Consensus 286 gl~Peecl~IGDS~~DIeAAk~AGm~~IgV~~~~~~~~l--~~Ad~iI~s~~EL~~~~ 341 (381)
T PLN02575 286 NFIPERCIVFGNSNQTVEAAHDARMKCVAVASKHPIYEL--GAADLVVRRLDELSIVD 341 (381)
T ss_pred CCCcccEEEEcCCHHHHHHHHHcCCEEEEECCCCChhHh--cCCCEEECCHHHHHHHH
Confidence 999999999999999999999999999999876544432 35899999999975444
No 9
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=100.00 E-value=3.4e-34 Score=221.00 Aligned_cols=206 Identities=24% Similarity=0.276 Sum_probs=163.4
Q ss_pred CcceEEEeCCCccccChhh-HHHHHHHHHHHhcCCCCCCCchHHHHHHhcCCCHHHHHHHhC-------------CC--C
Q 025896 21 PLEAVLFDVDGTLCDSDPL-HHYAFREMLQEIGFNDGVPITEDFFVENIAGKHNIDIAKILF-------------PD--D 84 (246)
Q Consensus 21 ~~k~iifD~DGTL~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~--~ 84 (246)
++|+|+||+||||+|+... +..++.++++++|. +.+.+.+.. ..|.+....+..+. .. .
T Consensus 1 ~~k~viFD~DGTLiDs~~~~~~~a~~~~~~~~g~----~~~~~~~~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (253)
T TIGR01422 1 KIEAVIFDWAGTTVDFGSFAPTQAFVEAFAEFGV----QITLEEARG-PMGLGKWDHIRALLKMPAVAERWRAKFGRLPT 75 (253)
T ss_pred CceEEEEeCCCCeecCCCccHHHHHHHHHHHcCC----CccHHHHHH-hcCccHHHHHHHHhcCHHHHHHHHHHhCCCCC
Confidence 3689999999999998653 57889999999853 445554433 34555443333221 11 2
Q ss_pred chhhhhhHHHHHHHHHHHhhccCCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcc-eEEEecCCCCCC
Q 025896 85 LPRGLKFCEDKEAMFRKLASEQLKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFF-QVVILGDECERA 163 (246)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f-~~~~~~~~~~~~ 163 (246)
......+...+...+.........++||+.++|+.|+++|++++|+||.....++.+++++|+..+| +.++++++....
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~gl~~~f~d~ii~~~~~~~~ 155 (253)
T TIGR01422 76 EADIEAIYEAFEPLQLAKLAEYSSPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEAALQGYRPDYNVTTDDVPAG 155 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHHHhcCCCCceEEccccCCCC
Confidence 2233444444555444444456889999999999999999999999999999999999999999985 999999998899
Q ss_pred CCChHHHHHHHHHcCCC-CCcEEEEecChhhhHHHHhcCCCEEEEcCCCC------------------------hhhhhc
Q 025896 164 KPFPDPYFKALEMLKVS-KDHTFVFEDSVSGIKAGVAAGLPVVGLTTRNP------------------------EHVLLE 218 (246)
Q Consensus 164 kp~~~~~~~~~~~~~~~-~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~------------------------~~~~~~ 218 (246)
||+|+.|..+++++++. |++|++|||+.+|+.+|+++|+.+|++.+|.. ..++..
T Consensus 156 KP~p~~~~~a~~~l~~~~~~~~l~IGDs~~Di~aA~~aGi~~i~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 235 (253)
T TIGR01422 156 RPAPWMALKNAIELGVYDVAACVKVGDTVPDIEEGRNAGMWTVGLILSSNELGLSEEEYRALDPAELEARRAEATARLKA 235 (253)
T ss_pred CCCHHHHHHHHHHcCCCCchheEEECCcHHHHHHHHHCCCeEEEEecCCcccCCCHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999995 99999999999999999999999999998854 245666
Q ss_pred cCCcEEecCCCCh
Q 025896 219 ANPTFLIKDYDDP 231 (246)
Q Consensus 219 ~~~~~~i~~~~el 231 (246)
.+|+++++++.|+
T Consensus 236 ~~~~~v~~~~~el 248 (253)
T TIGR01422 236 AGAHYVIDTLAEL 248 (253)
T ss_pred cCCCEehhcHHHH
Confidence 7899999999993
No 10
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=100.00 E-value=9.9e-34 Score=219.80 Aligned_cols=215 Identities=22% Similarity=0.293 Sum_probs=166.2
Q ss_pred cCCcceEEEeCCCccccChhh-HHHHHHHHHHHhcCCCCCCCchHHHHHHhcCCCHHHHHHHhC-------------CC-
Q 025896 19 LAPLEAVLFDVDGTLCDSDPL-HHYAFREMLQEIGFNDGVPITEDFFVENIAGKHNIDIAKILF-------------PD- 83 (246)
Q Consensus 19 ~~~~k~iifD~DGTL~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~- 83 (246)
|+++|+|+||+||||+|+... +..++.++++.+|. +.+...... ..|......++.+. ..
T Consensus 1 ~~~~k~vIFDlDGTLiDs~~~~~~~a~~~~~~~~g~----~~~~~~~~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~ 75 (267)
T PRK13478 1 MMKIQAVIFDWAGTTVDFGSFAPTQAFVEAFAQFGV----EITLEEARG-PMGLGKWDHIRALLKMPRVAARWQAVFGRL 75 (267)
T ss_pred CCceEEEEEcCCCCeecCCCccHHHHHHHHHHHcCC----CCCHHHHHH-hcCCCHHHHHHHHHhcHHHHHHHHHHhCCC
Confidence 356899999999999998643 46899999999854 344444333 34554433333221 11
Q ss_pred -CchhhhhhHHHHHHHHHHHhhccCCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcc-eEEEecCCCC
Q 025896 84 -DLPRGLKFCEDKEAMFRKLASEQLKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFF-QVVILGDECE 161 (246)
Q Consensus 84 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f-~~~~~~~~~~ 161 (246)
.......+...+...+.........++||+.++|+.|+++|++++|+||.....+...++.+++..+| +.++++++..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~~~~l~~~~~d~i~~~~~~~ 155 (267)
T PRK13478 76 PTEADVDALYAAFEPLQIAKLADYATPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPLAAAQGYRPDHVVTTDDVP 155 (267)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHHhhcCCCceEEEcCCcCC
Confidence 22233444444455544444456789999999999999999999999999999999999999888874 8999999888
Q ss_pred CCCCChHHHHHHHHHcCCC-CCcEEEEecChhhhHHHHhcCCCEEEEcCCCC------------------------hhhh
Q 025896 162 RAKPFPDPYFKALEMLKVS-KDHTFVFEDSVSGIKAGVAAGLPVVGLTTRNP------------------------EHVL 216 (246)
Q Consensus 162 ~~kp~~~~~~~~~~~~~~~-~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~------------------------~~~~ 216 (246)
..||+|+.|..+++++++. +++|++|||+.+|+++|+++|+.+|++.+++. ..++
T Consensus 156 ~~KP~p~~~~~a~~~l~~~~~~e~l~IGDs~~Di~aA~~aG~~~i~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 235 (267)
T PRK13478 156 AGRPYPWMALKNAIELGVYDVAACVKVDDTVPGIEEGLNAGMWTVGVILSGNELGLSEEEYQALSAAELAARRERARARL 235 (267)
T ss_pred CCCCChHHHHHHHHHcCCCCCcceEEEcCcHHHHHHHHHCCCEEEEEccCcccccCCHHHHHhcCHHHHHHHHHHHHHHH
Confidence 8999999999999999996 69999999999999999999999999998854 2455
Q ss_pred hccCCcEEecCCCChhhHHHHhhh
Q 025896 217 LEANPTFLIKDYDDPKLWSALEEL 240 (246)
Q Consensus 217 ~~~~~~~~i~~~~el~~~~~l~~~ 240 (246)
...+++++++++.+ +..+++.+
T Consensus 236 ~~~~a~~vi~~~~~--l~~~l~~~ 257 (267)
T PRK13478 236 RAAGAHYVIDTIAD--LPAVIADI 257 (267)
T ss_pred HHcCCCeehhhHHH--HHHHHHHH
Confidence 56789999999999 44545443
No 11
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=100.00 E-value=6.1e-34 Score=214.46 Aligned_cols=203 Identities=29% Similarity=0.379 Sum_probs=166.3
Q ss_pred EEEeCCCccccChhhHHHHHHHHHHHhcCCCCCCCchHHHHHHhcCCCHHHHHHHhCCC-----CchhhhhhHHHHHHHH
Q 025896 25 VLFDVDGTLCDSDPLHHYAFREMLQEIGFNDGVPITEDFFVENIAGKHNIDIAKILFPD-----DLPRGLKFCEDKEAMF 99 (246)
Q Consensus 25 iifD~DGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 99 (246)
|+||+||||+|+...+..++..+++++|.. ..+...+.. ..|......+..++.. .......+...+...+
T Consensus 1 viFD~DGTL~Ds~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (213)
T TIGR01449 1 VLFDLDGTLVDSAPDIAAAVNMALAALGLP---PATLARVIG-FIGNGVPVLMERVLAWAGQEPDAQRVAELRKLFDRHY 76 (213)
T ss_pred CeecCCCccccCHHHHHHHHHHHHHHCCCC---CCCHHHHHH-HhcccHHHHHHHHhhccccccChHHHHHHHHHHHHHH
Confidence 689999999999999999999999999643 234444433 3566666565555433 2223444455555555
Q ss_pred HHHhhccCCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHcCC
Q 025896 100 RKLASEQLKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEMLKV 179 (246)
Q Consensus 100 ~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~ 179 (246)
.........++||+.++|+.|+++|++++|+||++...++..++++|+..+|+.++++++....||+|+.|..+++++++
T Consensus 77 ~~~~~~~~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~p~~~~~~~~~~~~ 156 (213)
T TIGR01449 77 EEVAGELTSVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLELLGLAKYFSVLIGGDSLAQRKPHPDPLLLAAERLGV 156 (213)
T ss_pred HHhccccCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCcHhhCcEEEecCCCCCCCCChHHHHHHHHHcCC
Confidence 55544457899999999999999999999999999999999999999999999999999888899999999999999999
Q ss_pred CCCcEEEEecChhhhHHHHhcCCCEEEEcCCCC-hhhhhccCCcEEecCCCCh
Q 025896 180 SKDHTFVFEDSVSGIKAGVAAGLPVVGLTTRNP-EHVLLEANPTFLIKDYDDP 231 (246)
Q Consensus 180 ~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~-~~~~~~~~~~~~i~~~~el 231 (246)
+|+++++|||+.+|+.+|+++|++++++.++.. ........++++++++.++
T Consensus 157 ~~~~~~~igDs~~d~~aa~~aG~~~i~v~~g~~~~~~l~~~~a~~~i~~~~~l 209 (213)
T TIGR01449 157 APQQMVYVGDSRVDIQAARAAGCPSVLLTYGYRYGEAIDLLPPDVLYDSLNEL 209 (213)
T ss_pred ChhHeEEeCCCHHHHHHHHHCCCeEEEEccCCCCCcchhhcCCCeEeCCHHHH
Confidence 999999999999999999999999999998853 3344456899999999983
No 12
>PRK11587 putative phosphatase; Provisional
Probab=100.00 E-value=4.4e-33 Score=210.05 Aligned_cols=203 Identities=22% Similarity=0.304 Sum_probs=160.4
Q ss_pred CCcceEEEeCCCccccChhhHHHHHHHHHHHhcCCCCCCCchHHHHHHhcCCCHHHHHHHhCCC-CchhhhhhHHHHHHH
Q 025896 20 APLEAVLFDVDGTLCDSDPLHHYAFREMLQEIGFNDGVPITEDFFVENIAGKHNIDIAKILFPD-DLPRGLKFCEDKEAM 98 (246)
Q Consensus 20 ~~~k~iifD~DGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 98 (246)
|++|+|+||+||||+|+...+..++..+++++|++ .......+.|.+....++.+... ............. .
T Consensus 1 M~~k~viFDlDGTL~Ds~~~~~~a~~~~~~~~g~~------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 73 (218)
T PRK11587 1 MRCKGFLFDLDGTLVDSLPAVERAWSNWADRHGIA------PDEVLNFIHGKQAITSLRHFMAGASEAEIQAEFTRLE-Q 73 (218)
T ss_pred CCCCEEEEcCCCCcCcCHHHHHHHHHHHHHHcCCC------HHHHHHHHcCCCHHHHHHHHhccCCcHHHHHHHHHHH-H
Confidence 35799999999999999999999999999999642 23334455677777777666543 2222222222111 1
Q ss_pred HHHHhhccCCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHcC
Q 025896 99 FRKLASEQLKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEMLK 178 (246)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~ 178 (246)
+.........++||+.++|+.|+++|++++|+||+........++..++ .+|+.++++++....||+|+.|..+++++|
T Consensus 74 ~~~~~~~~~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~~~l-~~~~~i~~~~~~~~~KP~p~~~~~~~~~~g 152 (218)
T PRK11587 74 IEATDTEGITALPGAIALLNHLNKLGIPWAIVTSGSVPVASARHKAAGL-PAPEVFVTAERVKRGKPEPDAYLLGAQLLG 152 (218)
T ss_pred HHHhhhcCceeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhcCC-CCccEEEEHHHhcCCCCCcHHHHHHHHHcC
Confidence 2222234678999999999999999999999999988878888888888 457888888888889999999999999999
Q ss_pred CCCCcEEEEecChhhhHHHHhcCCCEEEEcCCCChhhhhccCCcEEecCCCChh
Q 025896 179 VSKDHTFVFEDSVSGIKAGVAAGLPVVGLTTRNPEHVLLEANPTFLIKDYDDPK 232 (246)
Q Consensus 179 ~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i~~~~el~ 232 (246)
++|++|++|||+..|+++|+++|+.++++.++....+ ...++++++++.|+.
T Consensus 153 ~~p~~~l~igDs~~di~aA~~aG~~~i~v~~~~~~~~--~~~~~~~~~~~~el~ 204 (218)
T PRK11587 153 LAPQECVVVEDAPAGVLSGLAAGCHVIAVNAPADTPR--LDEVDLVLHSLEQLT 204 (218)
T ss_pred CCcccEEEEecchhhhHHHHHCCCEEEEECCCCchhh--hccCCEEecchhhee
Confidence 9999999999999999999999999999987754332 346899999999954
No 13
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=100.00 E-value=8.7e-33 Score=210.07 Aligned_cols=210 Identities=27% Similarity=0.353 Sum_probs=171.5
Q ss_pred cCCcceEEEeCCCccccChhhHHHHHHHHHHHhcCCCCCCCchHHHHHHhcCCCHHHHHHHhCCC-----CchhhhhhHH
Q 025896 19 LAPLEAVLFDVDGTLCDSDPLHHYAFREMLQEIGFNDGVPITEDFFVENIAGKHNIDIAKILFPD-----DLPRGLKFCE 93 (246)
Q Consensus 19 ~~~~k~iifD~DGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 93 (246)
.+++++|+||+||||+++...+..++..+++.+|.+ ..+...+ ..+.|......+...+.. ..........
T Consensus 3 ~~~~~~iiFD~DGTL~d~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (226)
T PRK13222 3 FMDIRAVAFDLDGTLVDSAPDLAAAVNAALAALGLP---PAGEERV-RTWVGNGADVLVERALTWAGREPDEELLEKLRE 78 (226)
T ss_pred CCcCcEEEEcCCcccccCHHHHHHHHHHHHHHCCCC---CCCHHHH-HHHhCccHHHHHHHHHhhccCCccHHHHHHHHH
Confidence 466899999999999999988889999999999543 2233333 345566666655554432 3344455555
Q ss_pred HHHHHHHHHhhccCCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHH
Q 025896 94 DKEAMFRKLASEQLKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKA 173 (246)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~ 173 (246)
.+...+.........++||+.++|+.|++.|++++++||+....++.+++++++..+|+.+++++.....||+|+.++.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~ 158 (226)
T PRK13222 79 LFDRHYAENVAGGSRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEALGIADYFSVVIGGDSLPNKKPDPAPLLLA 158 (226)
T ss_pred HHHHHHHHhccccCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCccCccEEEcCCCCCCCCcChHHHHHH
Confidence 55666665544467899999999999999999999999999999999999999999999999998888899999999999
Q ss_pred HHHcCCCCCcEEEEecChhhhHHHHhcCCCEEEEcCCCC-hhhhhccCCcEEecCCCChh
Q 025896 174 LEMLKVSKDHTFVFEDSVSGIKAGVAAGLPVVGLTTRNP-EHVLLEANPTFLIKDYDDPK 232 (246)
Q Consensus 174 ~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~-~~~~~~~~~~~~i~~~~el~ 232 (246)
+++++++++++++|||+.+|+++|+.+|+.++++.++.. ..+.....|+++++++.++.
T Consensus 159 ~~~~~~~~~~~i~igD~~~Di~~a~~~g~~~i~v~~g~~~~~~~~~~~~~~~i~~~~~l~ 218 (226)
T PRK13222 159 CEKLGLDPEEMLFVGDSRNDIQAARAAGCPSVGVTYGYNYGEPIALSEPDVVIDHFAELL 218 (226)
T ss_pred HHHcCCChhheEEECCCHHHHHHHHHCCCcEEEECcCCCCccchhhcCCCEEECCHHHHH
Confidence 999999999999999999999999999999999998853 33444568999999999943
No 14
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=100.00 E-value=3.2e-32 Score=211.05 Aligned_cols=212 Identities=24% Similarity=0.326 Sum_probs=167.5
Q ss_pred CCcceEEEeCCCccccChhhHHHHHHHHHHHhcCCCCCCCchHHHHHHhcCCCHHHHHHHhCCC-------CchhhhhhH
Q 025896 20 APLEAVLFDVDGTLCDSDPLHHYAFREMLQEIGFNDGVPITEDFFVENIAGKHNIDIAKILFPD-------DLPRGLKFC 92 (246)
Q Consensus 20 ~~~k~iifD~DGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 92 (246)
..+|+|+||+||||+|+...+..++..+++++|. ..........+.|......+..++.. .......+.
T Consensus 11 ~~~k~viFDlDGTL~Ds~~~~~~a~~~~~~~~g~----~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 86 (272)
T PRK13223 11 RLPRLVMFDLDGTLVDSVPDLAAAVDRMLLELGR----PPAGLEAVRHWVGNGAPVLVRRALAGSIDHDGVDDELAEQAL 86 (272)
T ss_pred ccCCEEEEcCCCccccCHHHHHHHHHHHHHHcCC----CCCCHHHHHHHhChhHHHHHHHHhcccccccCCCHHHHHHHH
Confidence 5688999999999999999999999999999954 33222222345566655555544321 122233333
Q ss_pred HHHHHHHHHHhhccCCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHH
Q 025896 93 EDKEAMFRKLASEQLKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFK 172 (246)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~ 172 (246)
..+.+.+... .....++||+.++|+.|++.|++++|+||.+...++..++++++..+|+.+++++..+..||+|..++.
T Consensus 87 ~~~~~~~~~~-~~~~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~~i~~~f~~i~~~d~~~~~Kp~p~~~~~ 165 (272)
T PRK13223 87 ALFMEAYADS-HELTVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQMKIGRYFRWIIGGDTLPQKKPDPAALLF 165 (272)
T ss_pred HHHHHHHHhc-CcCCccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHHcCcHhhCeEEEecCCCCCCCCCcHHHHH
Confidence 3344444332 124678999999999999999999999999999999999999999999999999888889999999999
Q ss_pred HHHHcCCCCCcEEEEecChhhhHHHHhcCCCEEEEcCCC-ChhhhhccCCcEEecCCCChhhHHHHh
Q 025896 173 ALEMLKVSKDHTFVFEDSVSGIKAGVAAGLPVVGLTTRN-PEHVLLEANPTFLIKDYDDPKLWSALE 238 (246)
Q Consensus 173 ~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~-~~~~~~~~~~~~~i~~~~el~~~~~l~ 238 (246)
+++++|+++++|++|||+.+|+++|+++|+.++++.+|. ...++....++++++++.+ +..++.
T Consensus 166 ~~~~~g~~~~~~l~IGD~~~Di~aA~~aGi~~i~v~~G~~~~~~l~~~~~~~vi~~l~e--l~~~~~ 230 (272)
T PRK13223 166 VMKMAGVPPSQSLFVGDSRSDVLAAKAAGVQCVALSYGYNHGRPIAEESPALVIDDLRA--LLPGCA 230 (272)
T ss_pred HHHHhCCChhHEEEECCCHHHHHHHHHCCCeEEEEecCCCCchhhhhcCCCEEECCHHH--HHHHHh
Confidence 999999999999999999999999999999999999884 3444455689999999999 444443
No 15
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=100.00 E-value=5.2e-32 Score=208.96 Aligned_cols=212 Identities=20% Similarity=0.258 Sum_probs=167.2
Q ss_pred cCCcceEEEeCCCccccChhhHHHHHHHHHHHhcCCCCCCCchHHHHHHhcCCCHHHHHHHhCCCCchhhhhhHHHHHHH
Q 025896 19 LAPLEAVLFDVDGTLCDSDPLHHYAFREMLQEIGFNDGVPITEDFFVENIAGKHNIDIAKILFPDDLPRGLKFCEDKEAM 98 (246)
Q Consensus 19 ~~~~k~iifD~DGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (246)
+..+|+|+||+||||+|+...+..++.++++++|+. ..+.+.+ ..+.|......++.+. ........+...+...
T Consensus 59 ~~~~k~vIFDlDGTLiDS~~~~~~a~~~~~~~~G~~---~~~~~~~-~~~~g~~~~~i~~~~~-~~~~~~~~~~~~~~~~ 133 (273)
T PRK13225 59 PQTLQAIIFDFDGTLVDSLPTVVAIANAHAPDFGYD---PIDERDY-AQLRQWSSRTIVRRAG-LSPWQQARLLQRVQRQ 133 (273)
T ss_pred hhhcCEEEECCcCccccCHHHHHHHHHHHHHHCCCC---CCCHHHH-HHHhCccHHHHHHHcC-CCHHHHHHHHHHHHHH
Confidence 346899999999999999999999999999999653 2344433 3444655555555432 2222334444445444
Q ss_pred HHHHhhccCCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHcC
Q 025896 99 FRKLASEQLKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEMLK 178 (246)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~ 178 (246)
+... ....+++||+.++|+.|+++|++++|+||+....+...++++|+.++|+.+++++.. .+++..+..++++++
T Consensus 134 ~~~~-~~~~~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~gl~~~F~~vi~~~~~---~~k~~~~~~~l~~~~ 209 (273)
T PRK13225 134 LGDC-LPALQLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQGLRSLFSVVQAGTPI---LSKRRALSQLVAREG 209 (273)
T ss_pred HHhh-cccCCcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChhheEEEEecCCC---CCCHHHHHHHHHHhC
Confidence 4443 346789999999999999999999999999999999999999999999988877654 245688999999999
Q ss_pred CCCCcEEEEecChhhhHHHHhcCCCEEEEcCCCC-hhhhhccCCcEEecCCCChhhHHHHhhhh
Q 025896 179 VSKDHTFVFEDSVSGIKAGVAAGLPVVGLTTRNP-EHVLLEANPTFLIKDYDDPKLWSALEELD 241 (246)
Q Consensus 179 ~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~-~~~~~~~~~~~~i~~~~el~~~~~l~~~~ 241 (246)
++|++|++|||+.+|+.+|+++|+.+|++.++.. ..++....|+++++++.+ ++.++.++.
T Consensus 210 ~~p~~~l~IGDs~~Di~aA~~AG~~~I~v~~g~~~~~~l~~~~ad~~i~~~~e--L~~~~~~~~ 271 (273)
T PRK13225 210 WQPAAVMYVGDETRDVEAARQVGLIAVAVTWGFNDRQSLVAACPDWLLETPSD--LLQAVTQLM 271 (273)
T ss_pred cChhHEEEECCCHHHHHHHHHCCCeEEEEecCCCCHHHHHHCCCCEEECCHHH--HHHHHHHHh
Confidence 9999999999999999999999999999999854 444556789999999999 666666553
No 16
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=100.00 E-value=9.3e-32 Score=201.18 Aligned_cols=201 Identities=27% Similarity=0.379 Sum_probs=159.5
Q ss_pred EEEeCCCccccChhhHHHHHHHHHHHh-cCCCCCCCchHHHHHHhcCCCHHHHHHHhCCCCchhhhhhHHHHHHHHHHHh
Q 025896 25 VLFDVDGTLCDSDPLHHYAFREMLQEI-GFNDGVPITEDFFVENIAGKHNIDIAKILFPDDLPRGLKFCEDKEAMFRKLA 103 (246)
Q Consensus 25 iifD~DGTL~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (246)
|+||+||||+|+...+..++.++++++ |.. ..+.+.+ ..+.|......++.+. ........+. ...+ . .
T Consensus 1 iiFDlDGTL~Ds~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~g~~~~~~~~~~~-~~~~~~~~~~---~~~~-~-~ 70 (205)
T TIGR01454 1 VVFDLDGVLVDSFAVMREAFAIAYREVVGDG---PAPFEEY-RRHLGRYFPDIMRIMG-LPLEMEEPFV---RESY-R-L 70 (205)
T ss_pred CeecCcCccccCHHHHHHHHHHHHHHhcCCC---CCCHHHH-HHHhCccHHHHHHHcC-CCHHHHHHHH---HHHH-H-h
Confidence 689999999999999999999999884 542 2344443 3344666555555432 1111111111 1111 1 2
Q ss_pred hccCCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHcCCCCCc
Q 025896 104 SEQLKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEMLKVSKDH 183 (246)
Q Consensus 104 ~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~ 183 (246)
.....++||+.++|++|+++|++++|+||.....++..++++|+..+|+.++++++....||+++.|+.+++++++++++
T Consensus 71 ~~~~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~ 150 (205)
T TIGR01454 71 AGEVEVFPGVPELLAELRADGVGTAIATGKSGPRARSLLEALGLLPLFDHVIGSDEVPRPKPAPDIVREALRLLDVPPED 150 (205)
T ss_pred hcccccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHcCChhheeeEEecCcCCCCCCChHHHHHHHHHcCCChhh
Confidence 34688999999999999999999999999999999999999999999999999988888999999999999999999999
Q ss_pred EEEEecChhhhHHHHhcCCCEEEEcCCC-ChhhhhccCCcEEecCCCChhhHHHH
Q 025896 184 TFVFEDSVSGIKAGVAAGLPVVGLTTRN-PEHVLLEANPTFLIKDYDDPKLWSAL 237 (246)
Q Consensus 184 ~~~igD~~~Di~~a~~~G~~~i~v~~~~-~~~~~~~~~~~~~i~~~~el~~~~~l 237 (246)
+++|||+.+|+.+|+++|++++++.+|. ...++....++++++++.+ +..++
T Consensus 151 ~l~igD~~~Di~aA~~~Gi~~i~~~~g~~~~~~l~~~~~~~~~~~~~~--l~~~~ 203 (205)
T TIGR01454 151 AVMVGDAVTDLASARAAGTATVAALWGEGDAGELLAARPDFLLRKPQS--LLALC 203 (205)
T ss_pred eEEEcCCHHHHHHHHHcCCeEEEEEecCCChhhhhhcCCCeeeCCHHH--HHHHh
Confidence 9999999999999999999999999995 4555556789999999988 44443
No 17
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=100.00 E-value=3.3e-32 Score=206.17 Aligned_cols=205 Identities=20% Similarity=0.315 Sum_probs=149.0
Q ss_pred cceEEEeCCCccccChhhHHHHHHHHHHHhcCCCCCCCchHHHHHHhc------CCC----HHHHHHHhCCC-Cchhhhh
Q 025896 22 LEAVLFDVDGTLCDSDPLHHYAFREMLQEIGFNDGVPITEDFFVENIA------GKH----NIDIAKILFPD-DLPRGLK 90 (246)
Q Consensus 22 ~k~iifD~DGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~----~~~~~~~~~~~-~~~~~~~ 90 (246)
+++|+||+||||+|+...+..++..+.+.+... |.+.+.+.+...+. +.. .......+... ...
T Consensus 2 ~~~viFDlDGTL~ds~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 76 (221)
T TIGR02253 2 IKAIFFDLDDTLIDTSGLAEKARRNAIEVLIEA-GLNVDFEEAYEELLKLIKEYGSNYPTHFDYLIRRLWEEYNPK---- 76 (221)
T ss_pred ceEEEEeCCCCCcCCCCccCHHHHHHHHHHHHC-CCcCCHHHHHHHHHHHHHHhccccCcchHHHHHHHhhhcCHH----
Confidence 789999999999999988888777655433111 33344443322221 110 11111111111 111
Q ss_pred hHHHHHHHHHHHhhccCCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHH
Q 025896 91 FCEDKEAMFRKLASEQLKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDECERAKPFPDPY 170 (246)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~ 170 (246)
........+.........++||+.++|++|+++|++++|+||++...++..++++|+..+|+.++++++.+..||+|+.|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~ 156 (221)
T TIGR02253 77 LVAAFVYAYHKLKFAYLRVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERLGVRDFFDAVITSEEEGVEKPHPKIF 156 (221)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhCChHHhccEEEEeccCCCCCCCHHHH
Confidence 11111122222222346899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCcEEEEecCh-hhhHHHHhcCCCEEEEcCCCChh-h-hhccCCcEEecCCCCh
Q 025896 171 FKALEMLKVSKDHTFVFEDSV-SGIKAGVAAGLPVVGLTTRNPEH-V-LLEANPTFLIKDYDDP 231 (246)
Q Consensus 171 ~~~~~~~~~~~~~~~~igD~~-~Di~~a~~~G~~~i~v~~~~~~~-~-~~~~~~~~~i~~~~el 231 (246)
+.+++++|++++++++|||+. +|+.+|+++|+.+|++.++.... + .....++++++++.|+
T Consensus 157 ~~~~~~~~~~~~~~~~igDs~~~di~~A~~aG~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~el 220 (221)
T TIGR02253 157 YAALKRLGVKPEEAVMVGDRLDKDIKGAKNLGMKTVWINQGKSSKMEDDVYPYPDYEISSLREL 220 (221)
T ss_pred HHHHHHcCCChhhEEEECCChHHHHHHHHHCCCEEEEECCCCCcccccccccCCCeeeCcHHhh
Confidence 999999999999999999998 89999999999999998875322 1 2234688999998873
No 18
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=100.00 E-value=5.5e-32 Score=203.34 Aligned_cols=187 Identities=37% Similarity=0.543 Sum_probs=150.8
Q ss_pred CcceEEEeCCCccccChhhHHHHHHHHHHHhcCCCCCCCchHHHHHHhcCCCHHHHHHHhCCC--Cch-hhhhhHHHHHH
Q 025896 21 PLEAVLFDVDGTLCDSDPLHHYAFREMLQEIGFNDGVPITEDFFVENIAGKHNIDIAKILFPD--DLP-RGLKFCEDKEA 97 (246)
Q Consensus 21 ~~k~iifD~DGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~ 97 (246)
++|+++|||||||+|+...+.++|.++++++ |...+.+..... .|.........+... ... ...........
T Consensus 1 ~~~avIFD~DGvLvDse~~~~~a~~~~~~~~----g~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (221)
T COG0637 1 MIKAVIFDMDGTLVDSEPLHARAWLEALKEY----GIEISDEEIREL-HGGGIARIIDLLRKLAAGEDPADLAELERLLY 75 (221)
T ss_pred CCcEEEEcCCCCcCcchHHHHHHHHHHHHHc----CCCCCHHHHHHH-HCCChHHHHHHHHHHhcCCcccCHHHHHHHHH
Confidence 4789999999999999999999999999999 445666665555 454433333333322 111 11112222222
Q ss_pred HHHHHhhccCCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHc
Q 025896 98 MFRKLASEQLKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEML 177 (246)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~ 177 (246)
..........++.||+.++|+.|+++|+.+++.|++....++..+..+|+.++|+.+++++++..+||+|+.|..+++++
T Consensus 76 ~~~~~~~~~~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~gl~~~f~~~v~~~dv~~~KP~Pd~yL~Aa~~L 155 (221)
T COG0637 76 EAEALELEGLKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARLGLLDYFDVIVTADDVARGKPAPDIYLLAAERL 155 (221)
T ss_pred HHHHhhhcCCCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHccChhhcchhccHHHHhcCCCCCHHHHHHHHHc
Confidence 22233345689999999999999999999999999999999999999999999999999999989999999999999999
Q ss_pred CCCCCcEEEEecChhhhHHHHhcCCCEEEEcCCCC
Q 025896 178 KVSKDHTFVFEDSVSGIKAGVAAGLPVVGLTTRNP 212 (246)
Q Consensus 178 ~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~ 212 (246)
|++|++|++|+|+.+++++|+++||.++++..++.
T Consensus 156 gv~P~~CvviEDs~~Gi~Aa~aAGm~vv~v~~~~~ 190 (221)
T COG0637 156 GVDPEECVVVEDSPAGIQAAKAAGMRVVGVPAGHD 190 (221)
T ss_pred CCChHHeEEEecchhHHHHHHHCCCEEEEecCCCC
Confidence 99999999999999999999999999999988544
No 19
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=100.00 E-value=4.8e-32 Score=205.14 Aligned_cols=209 Identities=24% Similarity=0.385 Sum_probs=160.5
Q ss_pred CCcceEEEeCCCccccChhhHHHHHHHHHHHhcCCCCCCCchHHHHHHhcCCCHHHHHHHhCCC-C-chhhhhhHHHHHH
Q 025896 20 APLEAVLFDVDGTLCDSDPLHHYAFREMLQEIGFNDGVPITEDFFVENIAGKHNIDIAKILFPD-D-LPRGLKFCEDKEA 97 (246)
Q Consensus 20 ~~~k~iifD~DGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~ 97 (246)
+++|+|+||+||||+|+...+..++.++++.+| .+...+.+...+.|.+....+..+... . ......+...+..
T Consensus 2 ~~~~~viFD~DGTL~d~~~~~~~a~~~~~~~~g----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (221)
T PRK10563 2 SQIEAVFFDCDGTLVDSEVICSRAYVTMFAEFG----ITLSLEEVFKRFKGVKLYEIIDIISKEHGVTLAKAELEPVYRA 77 (221)
T ss_pred CCCCEEEECCCCCCCCChHHHHHHHHHHHHHcC----CCCCHHHHHHHhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 468999999999999999999999999999995 345555555566677777777666543 1 1112233333333
Q ss_pred HHHHHhhccCCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcce-EEEecCCCCCCCCChHHHHHHHHH
Q 025896 98 MFRKLASEQLKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQ-VVILGDECERAKPFPDPYFKALEM 176 (246)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~-~~~~~~~~~~~kp~~~~~~~~~~~ 176 (246)
.+.........++||+.++|+.|+ ++++|+||+....+...++++++.++|+ .++++++.+..||+|+.|..++++
T Consensus 78 ~~~~~~~~~~~~~~gv~~~L~~L~---~~~~ivTn~~~~~~~~~l~~~~l~~~F~~~v~~~~~~~~~KP~p~~~~~a~~~ 154 (221)
T PRK10563 78 EVARLFDSELEPIAGANALLESIT---VPMCVVSNGPVSKMQHSLGKTGMLHYFPDKLFSGYDIQRWKPDPALMFHAAEA 154 (221)
T ss_pred HHHHHHHccCCcCCCHHHHHHHcC---CCEEEEeCCcHHHHHHHHHhcChHHhCcceEeeHHhcCCCCCChHHHHHHHHH
Confidence 333333346789999999999993 8999999999999999999999999996 677777788999999999999999
Q ss_pred cCCCCCcEEEEecChhhhHHHHhcCCCEEEEcCCCChhhhhccCCcEEecCCCChhhHHHHh
Q 025896 177 LKVSKDHTFVFEDSVSGIKAGVAAGLPVVGLTTRNPEHVLLEANPTFLIKDYDDPKLWSALE 238 (246)
Q Consensus 177 ~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i~~~~el~~~~~l~ 238 (246)
++++|++|++|||+.+|+++|+++|++++++..+....+. ...++.+++++.| +..++.
T Consensus 155 ~~~~p~~~l~igDs~~di~aA~~aG~~~i~~~~~~~~~~~-~~~~~~~~~~~~~--l~~~~~ 213 (221)
T PRK10563 155 MNVNVENCILVDDSSAGAQSGIAAGMEVFYFCADPHNKPI-DHPLVTTFTDLAQ--LPELWK 213 (221)
T ss_pred cCCCHHHeEEEeCcHhhHHHHHHCCCEEEEECCCCCCcch-hhhhhHHHHHHHH--HHHHHH
Confidence 9999999999999999999999999999999654322222 2344566788877 444443
No 20
>PLN02940 riboflavin kinase
Probab=100.00 E-value=2.9e-31 Score=214.21 Aligned_cols=209 Identities=26% Similarity=0.397 Sum_probs=168.8
Q ss_pred CCcceEEEeCCCccccChhhHHHHHHHHHHHhcCCCCCCCchHHHHHHhcCCCHHHHHHHhCCC--CchhhhhhHHHHHH
Q 025896 20 APLEAVLFDVDGTLCDSDPLHHYAFREMLQEIGFNDGVPITEDFFVENIAGKHNIDIAKILFPD--DLPRGLKFCEDKEA 97 (246)
Q Consensus 20 ~~~k~iifD~DGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 97 (246)
..+|+|+||+||||+|+...+..++..+++++|. ..+.... ....|.+.......++.. .......+...+..
T Consensus 9 ~~ik~VIFDlDGTLvDt~~~~~~a~~~~~~~~G~----~~~~~~~-~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (382)
T PLN02940 9 KLVSHVILDLDGTLLNTDGIVSDVLKAFLVKYGK----QWDGREA-QKIVGKTPLEAAATVVEDYGLPCSTDEFNSEITP 83 (382)
T ss_pred ccCCEEEECCcCcCCcCHHHHHHHHHHHHHHcCC----CCCHHHH-HHhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 3489999999999999999999999999999954 4555544 345576666665555443 12223334444444
Q ss_pred HHHHHhhccCCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHH-hcCCCCcceEEEecCCCCCCCCChHHHHHHHHH
Q 025896 98 MFRKLASEQLKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMIS-KLGLSDFFQVVILGDECERAKPFPDPYFKALEM 176 (246)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~-~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~ 176 (246)
.+.... ....++||+.++|+.|+++|++++|+||.....+...+. ..++.++|+.++++++....||+|+.|..++++
T Consensus 84 ~~~~~~-~~~~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~gl~~~Fd~ii~~d~v~~~KP~p~~~~~a~~~ 162 (382)
T PLN02940 84 LLSEQW-CNIKALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQGWKESFSVIVGGDEVEKGKPSPDIFLEAAKR 162 (382)
T ss_pred HHHHHH-ccCCCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhccChHhhCCEEEehhhcCCCCCCHHHHHHHHHH
Confidence 444433 357899999999999999999999999999999888887 789999999999999999999999999999999
Q ss_pred cCCCCCcEEEEecChhhhHHHHhcCCCEEEEcCCCChhhhhccCCcEEecCCCChhhHH
Q 025896 177 LKVSKDHTFVFEDSVSGIKAGVAAGLPVVGLTTRNPEHVLLEANPTFLIKDYDDPKLWS 235 (246)
Q Consensus 177 ~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i~~~~el~~~~ 235 (246)
++++|++|++|||+..|+++|+++|+.++++.++..... ....++++++++.|+....
T Consensus 163 lgv~p~~~l~VGDs~~Di~aA~~aGi~~I~v~~g~~~~~-~~~~ad~~i~sl~el~~~~ 220 (382)
T PLN02940 163 LNVEPSNCLVIEDSLPGVMAGKAAGMEVIAVPSIPKQTH-LYSSADEVINSLLDLQPEK 220 (382)
T ss_pred cCCChhHEEEEeCCHHHHHHHHHcCCEEEEECCCCcchh-hccCccEEeCCHhHcCHHH
Confidence 999999999999999999999999999999988754332 3457899999999965444
No 21
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=99.98 E-value=3e-30 Score=201.18 Aligned_cols=213 Identities=24% Similarity=0.322 Sum_probs=154.8
Q ss_pred cCCcceEEEeCCCccccCh-hhHHHHHHHHHHHhcCCCCCCCchHHHHHH-hcCCCHHHHHHHh----CC--------CC
Q 025896 19 LAPLEAVLFDVDGTLCDSD-PLHHYAFREMLQEIGFNDGVPITEDFFVEN-IAGKHNIDIAKIL----FP--------DD 84 (246)
Q Consensus 19 ~~~~k~iifD~DGTL~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~--------~~ 84 (246)
..++++|+|||||||+|+. ..+..++.++++.+|++ ....+...+... ..|.........+ +. ..
T Consensus 37 ~~~~k~VIFDlDGTLvDS~~~~~~~a~~~~l~~~G~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (286)
T PLN02779 37 SALPEALLFDCDGVLVETERDGHRVAFNDAFKEFGLR-PVEWDVELYDELLNIGGGKERMTWYFNENGWPTSTIEKAPKD 115 (286)
T ss_pred ccCCcEEEEeCceeEEccccHHHHHHHHHHHHHcCCC-CCCCCHHHHHHHHccCCChHHHHHHHHHcCCCccccccCCcc
Confidence 3568999999999999999 99999999999999653 112233322211 1343333222222 11 00
Q ss_pred chh----hhhhHHHHHHHHHHHhhc-cCCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCC---CCcceEEEe
Q 025896 85 LPR----GLKFCEDKEAMFRKLASE-QLKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGL---SDFFQVVIL 156 (246)
Q Consensus 85 ~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l---~~~f~~~~~ 156 (246)
... ...+.......|...... .+.++||+.++|+.|+++|++++|+||.....+...++.++. ..+|+.+ +
T Consensus 116 ~e~~~~~~~~~~~~~~~~y~~~~~~~~~~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~~~~~~~~~~~~v-~ 194 (286)
T PLN02779 116 EEERKELVDSLHDRKTELFKELIESGALPLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTLLGPERAQGLDVF-A 194 (286)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhccccccCceEEE-e
Confidence 111 112222233444444332 358999999999999999999999999999999888887643 3344544 6
Q ss_pred cCCCCCCCCChHHHHHHHHHcCCCCCcEEEEecChhhhHHHHhcCCCEEEEcCCCChhhhhccCCcEEecCCCChhhH
Q 025896 157 GDECERAKPFPDPYFKALEMLKVSKDHTFVFEDSVSGIKAGVAAGLPVVGLTTRNPEHVLLEANPTFLIKDYDDPKLW 234 (246)
Q Consensus 157 ~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i~~~~el~~~ 234 (246)
+++.+..||+|++|..++++++++|++|++|||+.+|+++|+++|+.+|++.+++...+.. ..++++++++.++...
T Consensus 195 ~~~~~~~KP~p~~~~~a~~~~~~~p~~~l~IGDs~~Di~aA~~aG~~~i~v~~g~~~~~~l-~~ad~vi~~~~~l~~~ 271 (286)
T PLN02779 195 GDDVPKKKPDPDIYNLAAETLGVDPSRCVVVEDSVIGLQAAKAAGMRCIVTKSSYTADEDF-SGADAVFDCLGDVPLE 271 (286)
T ss_pred ccccCCCCCCHHHHHHHHHHhCcChHHEEEEeCCHHhHHHHHHcCCEEEEEccCCcccccc-CCCcEEECChhhcchh
Confidence 7777889999999999999999999999999999999999999999999998885433322 4789999999996643
No 22
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=99.98 E-value=9.2e-31 Score=192.94 Aligned_cols=179 Identities=28% Similarity=0.567 Sum_probs=148.5
Q ss_pred cceEEEeCCCccccChhhHHHHHHHHHHHhcCCCCCCCchHHHHHHhcCCCHHHHHHHhCCC-----CchhhhhhHHHHH
Q 025896 22 LEAVLFDVDGTLCDSDPLHHYAFREMLQEIGFNDGVPITEDFFVENIAGKHNIDIAKILFPD-----DLPRGLKFCEDKE 96 (246)
Q Consensus 22 ~k~iifD~DGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 96 (246)
+|+|+||+||||+|+...+..++..+++++|. ..+ ..+...+.|......+..+... .......+...+.
T Consensus 1 ~~~iiFD~DGTL~ds~~~~~~~~~~~~~~~g~----~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (185)
T TIGR02009 1 YKAVIFDMDGVIVDTAPLHAQAWKHLADKYGI----EFD-KQYNTSLGGLSREDILRAILKLRKPGLSLETIHQLAERKN 75 (185)
T ss_pred CCeEEEcCCCcccCChHHHHHHHHHHHHHcCC----CCC-HHHHHHcCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999999999999954 344 3444556677777666666442 3334444555555
Q ss_pred HHHHHHh-hccCCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHH
Q 025896 97 AMFRKLA-SEQLKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALE 175 (246)
Q Consensus 97 ~~~~~~~-~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~ 175 (246)
..+.+.. .....++||+.++|+.|+++|++++++|++ ..++..++++|+..+|+.++++++.+..||+|+.|..+++
T Consensus 76 ~~~~~~~~~~~~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l~~~~l~~~f~~v~~~~~~~~~kp~~~~~~~~~~ 153 (185)
T TIGR02009 76 ELYRELLRLTGAEVLPGIENFLKRLKKKGIAVGLGSSS--KNADRILAKLGLTDYFDAIVDADEVKEGKPHPETFLLAAE 153 (185)
T ss_pred HHHHHHHhccCCCCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHHHHcChHHHCCEeeehhhCCCCCCChHHHHHHHH
Confidence 5555544 234789999999999999999999999998 6688899999999999999999988899999999999999
Q ss_pred HcCCCCCcEEEEecChhhhHHHHhcCCCEEEE
Q 025896 176 MLKVSKDHTFVFEDSVSGIKAGVAAGLPVVGL 207 (246)
Q Consensus 176 ~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v 207 (246)
+++++|+++++|||+.+|+++|+++|+++++|
T Consensus 154 ~~~~~~~~~v~IgD~~~di~aA~~~G~~~i~v 185 (185)
T TIGR02009 154 LLGVSPNECVVFEDALAGVQAARAAGMFAVAV 185 (185)
T ss_pred HcCCCHHHeEEEeCcHhhHHHHHHCCCeEeeC
Confidence 99999999999999999999999999998875
No 23
>PRK09449 dUMP phosphatase; Provisional
Probab=99.97 E-value=3.3e-30 Score=195.53 Aligned_cols=207 Identities=20% Similarity=0.260 Sum_probs=147.5
Q ss_pred CcceEEEeCCCccccChhhHHHHHHHHHHHhcCCCCCCCchHHHHHH-hcCCCHHHHHHHhCCCCchhh-----hhh---
Q 025896 21 PLEAVLFDVDGTLCDSDPLHHYAFREMLQEIGFNDGVPITEDFFVEN-IAGKHNIDIAKILFPDDLPRG-----LKF--- 91 (246)
Q Consensus 21 ~~k~iifD~DGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----~~~--- 91 (246)
++|+|+||+||||+|.. ...++.++++.+|. ..+...+... ..+.+....+... ....... ..+
T Consensus 2 ~~k~iiFDlDGTLid~~--~~~~~~~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 74 (224)
T PRK09449 2 KYDWILFDADETLFHFD--AFAGLQRMFSRYGV----DFTAEDFQDYQAVNKPLWVDYQNG-AITALQLQHTRFESWAEK 74 (224)
T ss_pred CccEEEEcCCCchhcch--hhHHHHHHHHHhCC----CCcHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHH
Confidence 58999999999999854 35778888888854 3333322221 0111111111000 0000000 000
Q ss_pred ----HHHHHHHHHHHhhccCCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCCCCCCCh
Q 025896 92 ----CEDKEAMFRKLASEQLKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDECERAKPFP 167 (246)
Q Consensus 92 ----~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~ 167 (246)
...+...+.........++||+.++|+.|+ .|++++|+||+....++..++++|+.++|+.++++++.+..||+|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~L~~L~-~~~~~~i~Tn~~~~~~~~~l~~~~l~~~fd~v~~~~~~~~~KP~p 153 (224)
T PRK09449 75 LNVTPGELNSAFLNAMAEICTPLPGAVELLNALR-GKVKMGIITNGFTELQQVRLERTGLRDYFDLLVISEQVGVAKPDV 153 (224)
T ss_pred cCCCHHHHHHHHHHHHhhcCccCccHHHHHHHHH-hCCeEEEEeCCcHHHHHHHHHhCChHHHcCEEEEECccCCCCCCH
Confidence 111223333333345789999999999999 579999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCC-CcEEEEecCh-hhhHHHHhcCCCEEEEcCCCChhhhhccCCcEEecCCCChhhHHHHh
Q 025896 168 DPYFKALEMLKVSK-DHTFVFEDSV-SGIKAGVAAGLPVVGLTTRNPEHVLLEANPTFLIKDYDDPKLWSALE 238 (246)
Q Consensus 168 ~~~~~~~~~~~~~~-~~~~~igD~~-~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i~~~~el~~~~~l~ 238 (246)
++|..+++++|+.+ ++|++|||+. +|+.+|+++|+.++++.++... ......|+++++++.| +..+++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~vgD~~~~Di~~A~~aG~~~i~~~~~~~~-~~~~~~~~~~i~~~~e--l~~~l~ 223 (224)
T PRK09449 154 AIFDYALEQMGNPDRSRVLMVGDNLHSDILGGINAGIDTCWLNAHGRE-QPEGIAPTYQVSSLSE--LEQLLC 223 (224)
T ss_pred HHHHHHHHHcCCCCcccEEEEcCCcHHHHHHHHHCCCcEEEECCCCCC-CCCCCCCeEEECCHHH--HHHHHh
Confidence 99999999999854 7999999998 7999999999999999854322 1222468999999998 555543
No 24
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=99.97 E-value=2.7e-30 Score=190.89 Aligned_cols=182 Identities=26% Similarity=0.447 Sum_probs=146.3
Q ss_pred CCcceEEEeCCCccccChhhHHHHHHHHHHHhcCCCCCCCchHHHHHHhcCCCHHHHHHHhCCC--CchhhhhhHHHHHH
Q 025896 20 APLEAVLFDVDGTLCDSDPLHHYAFREMLQEIGFNDGVPITEDFFVENIAGKHNIDIAKILFPD--DLPRGLKFCEDKEA 97 (246)
Q Consensus 20 ~~~k~iifD~DGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 97 (246)
.++|+|+||+||||+|+...+..++..+++++|. +.+... .....|.+....+..+... .......+...+..
T Consensus 3 ~~~~~viFD~DGTLiDs~~~~~~a~~~~~~~~g~----~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (188)
T PRK10725 3 DRYAGLIFDMDGTILDTEPTHRKAWREVLGRYGL----QFDEQA-MVALNGSPTWRIAQAIIELNQADLDPHALAREKTE 77 (188)
T ss_pred CcceEEEEcCCCcCccCHHHHHHHHHHHHHHcCC----CCCHHH-HHHhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 4579999999999999999999999999999954 344333 3445677666655555432 11112223333334
Q ss_pred HHHHHhhccCCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHc
Q 025896 98 MFRKLASEQLKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEML 177 (246)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~ 177 (246)
.+.........++|+ .++|+.|++. ++++|+||+....++..++++|+.++|+.++++++.+..||+|+.|..+++++
T Consensus 78 ~~~~~~~~~~~~~~~-~e~L~~L~~~-~~l~I~T~~~~~~~~~~l~~~~l~~~fd~i~~~~~~~~~KP~p~~~~~~~~~~ 155 (188)
T PRK10725 78 AVKSMLLDSVEPLPL-IEVVKAWHGR-RPMAVGTGSESAIAEALLAHLGLRRYFDAVVAADDVQHHKPAPDTFLRCAQLM 155 (188)
T ss_pred HHHHHHhccCCCccH-HHHHHHHHhC-CCEEEEcCCchHHHHHHHHhCCcHhHceEEEehhhccCCCCChHHHHHHHHHc
Confidence 444444445678886 6899999876 89999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEecChhhhHHHHhcCCCEEEEc
Q 025896 178 KVSKDHTFVFEDSVSGIKAGVAAGLPVVGLT 208 (246)
Q Consensus 178 ~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~ 208 (246)
+++|++|++|||+.+|+++|+++|+++|++.
T Consensus 156 ~~~~~~~l~igDs~~di~aA~~aG~~~i~~~ 186 (188)
T PRK10725 156 GVQPTQCVVFEDADFGIQAARAAGMDAVDVR 186 (188)
T ss_pred CCCHHHeEEEeccHhhHHHHHHCCCEEEeec
Confidence 9999999999999999999999999999984
No 25
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=99.97 E-value=3.1e-30 Score=195.80 Aligned_cols=201 Identities=22% Similarity=0.332 Sum_probs=150.3
Q ss_pred cceEEEeCCCccccChhhHHHHHHHHHHHhcCCCCCCCchHHHHHHhcCCCHHHHHHHhCC-C-Cchh-----hhhh---
Q 025896 22 LEAVLFDVDGTLCDSDPLHHYAFREMLQEIGFNDGVPITEDFFVENIAGKHNIDIAKILFP-D-DLPR-----GLKF--- 91 (246)
Q Consensus 22 ~k~iifD~DGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~-----~~~~--- 91 (246)
+|+|+||+||||+|+......++..+++.+|. ......... +.+.. ...+..+.. . .... ...+
T Consensus 1 ~k~viFD~DGTL~d~~~~~~~~~~~~~~~~g~----~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (224)
T TIGR02254 1 YKTLLFDLDDTILDFQAAEALALRLLFEDQGI----PLTEDMFAQ-YKEIN-QGLWRAYEEGKITKDEVVNTRFSALLKE 74 (224)
T ss_pred CCEEEEcCcCcccccchHHHHHHHHHHHHhCC----CccHHHHHH-HHHHh-HHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999998854 333222111 11100 011111100 0 0000 0000
Q ss_pred ------HHHHHHHHHHHhhccCCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCCCCCC
Q 025896 92 ------CEDKEAMFRKLASEQLKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDECERAKP 165 (246)
Q Consensus 92 ------~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp 165 (246)
...+...+.........++||+.++|++|++. ++++|+||+....++..++++++..+||.++++++.+..||
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~L~~l~~~-~~~~i~Sn~~~~~~~~~l~~~~l~~~fd~i~~~~~~~~~KP 153 (224)
T TIGR02254 75 YNTEADEALLNQKYLRFLEEGHQLLPGAFELMENLQQK-FRLYIVTNGVRETQYKRLRKSGLFPFFDDIFVSEDAGIQKP 153 (224)
T ss_pred hCCCCcHHHHHHHHHHHHhccCeeCccHHHHHHHHHhc-CcEEEEeCCchHHHHHHHHHCCcHhhcCEEEEcCccCCCCC
Confidence 01223333333333468999999999999999 99999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHc-CCCCCcEEEEecCh-hhhHHHHhcCCCEEEEcCCCChhhhhccCCcEEecCCCC
Q 025896 166 FPDPYFKALEML-KVSKDHTFVFEDSV-SGIKAGVAAGLPVVGLTTRNPEHVLLEANPTFLIKDYDD 230 (246)
Q Consensus 166 ~~~~~~~~~~~~-~~~~~~~~~igD~~-~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i~~~~e 230 (246)
+|..|..+++++ +++|++++||||+. +|+.+|+++|++++++.++.... .....++++++++.|
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~v~igD~~~~di~~A~~~G~~~i~~~~~~~~~-~~~~~~~~~~~~~~e 219 (224)
T TIGR02254 154 DKEIFNYALERMPKFSKEEVLMIGDSLTADIKGGQNAGLDTCWMNPDMHPN-PDDIIPTYEIRSLEE 219 (224)
T ss_pred CHHHHHHHHHHhcCCCchheEEECCCcHHHHHHHHHCCCcEEEECCCCCCC-CCCCCCceEECCHHH
Confidence 999999999999 99999999999998 79999999999999998764332 233578899999988
No 26
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=99.97 E-value=9e-30 Score=211.34 Aligned_cols=214 Identities=18% Similarity=0.162 Sum_probs=165.1
Q ss_pred cCCcceEEEeCCCccccChhhHHHHHHHHHHHhcCC--CCCCCchHHHHHHhcCCCHHHHHHHhCCC-CchhhhhhHHHH
Q 025896 19 LAPLEAVLFDVDGTLCDSDPLHHYAFREMLQEIGFN--DGVPITEDFFVENIAGKHNIDIAKILFPD-DLPRGLKFCEDK 95 (246)
Q Consensus 19 ~~~~k~iifD~DGTL~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 95 (246)
.+++++|+||+||||+|+...+..+|.+++++++.. ++...+.+. .....|.+..+.+..+... ...........+
T Consensus 238 ~~m~k~vIFDlDGTLiDs~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~G~~~~~~~~~l~~~~~~~~~~~~~~~~ 316 (459)
T PRK06698 238 NEMLQALIFDMDGTLFQTDKILELSLDDTFDHLRSLQLWDTVTPIDK-YREIMGVPLPKVWEALLPDHSLEIREQTDAYF 316 (459)
T ss_pred HHhhhheeEccCCceecchhHHHHHHHHHHHHHhhhcccCCCCCHHH-HHHHcCCChHHHHHHHhhhcchhHHHHHHHHH
Confidence 456899999999999999999999999999998411 011122333 3445688888888777654 322223333333
Q ss_pred HHHHHHHh-hccCCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHH
Q 025896 96 EAMFRKLA-SEQLKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKAL 174 (246)
Q Consensus 96 ~~~~~~~~-~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~ 174 (246)
...+.... ....+++||+.++|++|+++|++++|+||+....++..++++++.++|+.++++++.. .+|+|+.+..++
T Consensus 317 ~~~~~~~~~~~~~~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~~l~~~f~~i~~~d~v~-~~~kP~~~~~al 395 (459)
T PRK06698 317 LERLIENIKSGKGALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYYDLDQWVTETFSIEQIN-SLNKSDLVKSIL 395 (459)
T ss_pred HHHhHHHHhhcCCCcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHCCcHhhcceeEecCCCC-CCCCcHHHHHHH
Confidence 33333322 2357899999999999999999999999999999999999999999999999988763 467888999999
Q ss_pred HHcCCCCCcEEEEecChhhhHHHHhcCCCEEEEcCCCChhhhhccCCcEEecCCCChhhHHHHhh
Q 025896 175 EMLKVSKDHTFVFEDSVSGIKAGVAAGLPVVGLTTRNPEHVLLEANPTFLIKDYDDPKLWSALEE 239 (246)
Q Consensus 175 ~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i~~~~el~~~~~l~~ 239 (246)
+++ +|++|++|||+.+|+.+|+++|+.++++.++....+.. ..++++++++.| +..++..
T Consensus 396 ~~l--~~~~~v~VGDs~~Di~aAk~AG~~~I~v~~~~~~~~~~-~~~d~~i~~l~e--l~~~l~~ 455 (459)
T PRK06698 396 NKY--DIKEAAVVGDRLSDINAAKDNGLIAIGCNFDFAQEDEL-AQADIVIDDLLE--LKGILST 455 (459)
T ss_pred Hhc--CcceEEEEeCCHHHHHHHHHCCCeEEEEeCCCCccccc-CCCCEEeCCHHH--HHHHHHH
Confidence 886 46899999999999999999999999999875433322 468999999998 5555544
No 27
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.97 E-value=2.2e-29 Score=224.93 Aligned_cols=219 Identities=25% Similarity=0.356 Sum_probs=175.9
Q ss_pred cCCcceEEEeCCCccccChhhHHHHHHHHHHHhcCCCCCCCchHHHHHHhcCCCHHHHHHHhCCC---CchhhhhhHHHH
Q 025896 19 LAPLEAVLFDVDGTLCDSDPLHHYAFREMLQEIGFNDGVPITEDFFVENIAGKHNIDIAKILFPD---DLPRGLKFCEDK 95 (246)
Q Consensus 19 ~~~~k~iifD~DGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 95 (246)
.+++|+|+|||||||+|+...+.+++.++++++|+ +.+.+.+. .+.|......+..+... ...........+
T Consensus 72 ~~~ikaVIFDlDGTLiDS~~~~~~a~~~~~~~~G~----~it~e~~~-~~~G~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 146 (1057)
T PLN02919 72 WGKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGV----EVTVEDFV-PFMGTGEANFLGGVASVKGVKGFDPDAAKKRF 146 (1057)
T ss_pred CCCCCEEEECCCCCeEeChHHHHHHHHHHHHHcCC----CCCHHHHH-HHhCCCHHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 45799999999999999999999999999999954 45555554 44566666655444322 111112222222
Q ss_pred HHHHHHHhh--ccCCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCC-CcceEEEecCCCCCCCCChHHHHH
Q 025896 96 EAMFRKLAS--EQLKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLS-DFFQVVILGDECERAKPFPDPYFK 172 (246)
Q Consensus 96 ~~~~~~~~~--~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~-~~f~~~~~~~~~~~~kp~~~~~~~ 172 (246)
...+..... ....++||+.++|++|+++|++++|+||.....++..++++++. .+|+.++++++....||+|++|..
T Consensus 147 ~~~~~~~~~~~~~~~~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L~~~gl~~~~Fd~iv~~~~~~~~KP~Pe~~~~ 226 (1057)
T PLN02919 147 FEIYLEKYAKPNSGIGFPGALELITQCKNKGLKVAVASSADRIKVDANLAAAGLPLSMFDAIVSADAFENLKPAPDIFLA 226 (1057)
T ss_pred HHHHHHHhhhcccCccCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHcCCChhHCCEEEECcccccCCCCHHHHHH
Confidence 233322211 12357999999999999999999999999999999999999996 789999999999999999999999
Q ss_pred HHHHcCCCCCcEEEEecChhhhHHHHhcCCCEEEEcCCCChhhhhccCCcEEecCCCChhhHHHHhhhhc
Q 025896 173 ALEMLKVSKDHTFVFEDSVSGIKAGVAAGLPVVGLTTRNPEHVLLEANPTFLIKDYDDPKLWSALEELDK 242 (246)
Q Consensus 173 ~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i~~~~el~~~~~l~~~~~ 242 (246)
+++++++.|++|++|||+..|+++|+++|+.+|++.++....++...+|+++++++.++.+..++.....
T Consensus 227 a~~~lgv~p~e~v~IgDs~~Di~AA~~aGm~~I~v~~~~~~~~L~~~~a~~vi~~l~el~~~~~~~~~~~ 296 (1057)
T PLN02919 227 AAKILGVPTSECVVIEDALAGVQAARAAGMRCIAVTTTLSEEILKDAGPSLIRKDIGNISLSDILTGGSD 296 (1057)
T ss_pred HHHHcCcCcccEEEEcCCHHHHHHHHHcCCEEEEECCCCCHHHHhhCCCCEEECChHHCCHHHHHhcCCC
Confidence 9999999999999999999999999999999999999877777777899999999999887777765444
No 28
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=99.97 E-value=1.5e-29 Score=186.55 Aligned_cols=177 Identities=28% Similarity=0.467 Sum_probs=142.6
Q ss_pred eEEEeCCCccccChhhHHHHHHHHHHHhcCCCCCCCchHHHHHHhcCCCHHHHHHHhCCC-----CchhhhhhHHHHHHH
Q 025896 24 AVLFDVDGTLCDSDPLHHYAFREMLQEIGFNDGVPITEDFFVENIAGKHNIDIAKILFPD-----DLPRGLKFCEDKEAM 98 (246)
Q Consensus 24 ~iifD~DGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 98 (246)
+|+||+||||+|+...+..++.++++.+|+ +.+... ...+.|......+..++.. .......+.......
T Consensus 1 ~iiFD~DGTL~ds~~~~~~~~~~~~~~~g~----~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (185)
T TIGR01990 1 AVIFDLDGVITDTAEYHYLAWKALADELGI----PFDEEF-NESLKGVSREDSLERILDLGGKKYSEEEKEELAERKNDY 75 (185)
T ss_pred CeEEcCCCccccChHHHHHHHHHHHHHcCC----CCCHHH-HHHhcCCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 589999999999999999999999999954 444443 3445566666666665443 223333444444444
Q ss_pred HHHHhh--ccCCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHH
Q 025896 99 FRKLAS--EQLKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEM 176 (246)
Q Consensus 99 ~~~~~~--~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~ 176 (246)
+..... ....++||+.++|+.|+++|++++|+||+. ..+..++++++..+|+.++++++.+..||+|+.|+.++++
T Consensus 76 ~~~~~~~~~~~~~~pg~~~~L~~L~~~g~~~~i~s~~~--~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~ 153 (185)
T TIGR01990 76 YVELLKELTPADVLPGIKNLLDDLKKNNIKIALASASK--NAPTVLEKLGLIDYFDAIVDPAEIKKGKPDPEIFLAAAEG 153 (185)
T ss_pred HHHHHHhcCCcccCccHHHHHHHHHHCCCeEEEEeCCc--cHHHHHHhcCcHhhCcEEEehhhcCCCCCChHHHHHHHHH
Confidence 443332 235789999999999999999999999874 3467899999999999999999999999999999999999
Q ss_pred cCCCCCcEEEEecChhhhHHHHhcCCCEEEE
Q 025896 177 LKVSKDHTFVFEDSVSGIKAGVAAGLPVVGL 207 (246)
Q Consensus 177 ~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v 207 (246)
++++|+++++|||+.+|+++|+++|+++|+|
T Consensus 154 ~~~~~~~~v~vgD~~~di~aA~~aG~~~i~v 184 (185)
T TIGR01990 154 LGVSPSECIGIEDAQAGIEAIKAAGMFAVGV 184 (185)
T ss_pred cCCCHHHeEEEecCHHHHHHHHHcCCEEEec
Confidence 9999999999999999999999999999987
No 29
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=99.97 E-value=8.1e-30 Score=192.40 Aligned_cols=130 Identities=14% Similarity=0.143 Sum_probs=109.9
Q ss_pred ccCCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHcCCCCCcE
Q 025896 105 EQLKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEMLKVSKDHT 184 (246)
Q Consensus 105 ~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~ 184 (246)
....++||+.++|+.|+++|++++|+||+....++..++++|+.++|+.++++++.+..||+|+.|..+++++|++|++|
T Consensus 90 ~~~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~~l~~~fd~iv~s~~~~~~KP~p~~~~~~~~~~~~~p~~~ 169 (224)
T PRK14988 90 PRAVLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHTGLDAHLDLLLSTHTFGYPKEDQRLWQAVAEHTGLKAERT 169 (224)
T ss_pred ccCCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHCCcHHHCCEEEEeeeCCCCCCCHHHHHHHHHHcCCChHHE
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecChhhhHHHHhcCCC-EEEEcCCCChhhhhccCCcEEecCCCChhhHHHHhh
Q 025896 185 FVFEDSVSGIKAGVAAGLP-VVGLTTRNPEHVLLEANPTFLIKDYDDPKLWSALEE 239 (246)
Q Consensus 185 ~~igD~~~Di~~a~~~G~~-~i~v~~~~~~~~~~~~~~~~~i~~~~el~~~~~l~~ 239 (246)
++|||+.+|+++|+++|+. ++++..+...... .+.....++.+ +.+++..
T Consensus 170 l~igDs~~di~aA~~aG~~~~~~v~~~~~~~~~---~~~~~~~~~~~--~~~~~~~ 220 (224)
T PRK14988 170 LFIDDSEPILDAAAQFGIRYCLGVTNPDSGIAE---KQYQRHPSLND--YRRLIPS 220 (224)
T ss_pred EEEcCCHHHHHHHHHcCCeEEEEEeCCCCCccc---hhccCCCcHHH--HHHHhhh
Confidence 9999999999999999998 5678776533322 22233445555 4444433
No 30
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=99.97 E-value=2.1e-29 Score=187.47 Aligned_cols=106 Identities=22% Similarity=0.322 Sum_probs=101.9
Q ss_pred cCCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHcCCCCCcEE
Q 025896 106 QLKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEMLKVSKDHTF 185 (246)
Q Consensus 106 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~ 185 (246)
...++||+.++|++|+++|++++|+||++...++..++++|+.++|+.++++++.+..||+|++|+.+++++|++|++++
T Consensus 90 ~~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~gl~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~p~~~~ 169 (198)
T TIGR01428 90 RLPPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHAGLDDPFDAVLSADAVRAYKPAPQVYQLALEALGVPPDEVL 169 (198)
T ss_pred cCCCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHCCChhhhheeEehhhcCCCCCCHHHHHHHHHHhCCChhhEE
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecChhhhHHHHhcCCCEEEEcCCC
Q 025896 186 VFEDSVSGIKAGVAAGLPVVGLTTRN 211 (246)
Q Consensus 186 ~igD~~~Di~~a~~~G~~~i~v~~~~ 211 (246)
+|||+.+|+.+|+++|+.++++.+++
T Consensus 170 ~vgD~~~Di~~A~~~G~~~i~v~r~~ 195 (198)
T TIGR01428 170 FVASNPWDLGGAKKFGFKTAWVNRPG 195 (198)
T ss_pred EEeCCHHHHHHHHHCCCcEEEecCCC
Confidence 99999999999999999999998764
No 31
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=99.96 E-value=2.8e-28 Score=182.19 Aligned_cols=179 Identities=22% Similarity=0.293 Sum_probs=132.0
Q ss_pred ceEEEeCCCccccChhhHHHHHHHHHHHhcCCCCCCCchHHHH----HHh-------------cCCCHHHH----HHHhC
Q 025896 23 EAVLFDVDGTLCDSDPLHHYAFREMLQEIGFNDGVPITEDFFV----ENI-------------AGKHNIDI----AKILF 81 (246)
Q Consensus 23 k~iifD~DGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-------------~~~~~~~~----~~~~~ 81 (246)
|+|+||+||||+|+...+..++.++++++|. ........ ..+ .|...... ....+
T Consensus 1 k~viFDlDGTL~d~~~~~~~a~~~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 76 (203)
T TIGR02252 1 KLITFDAVGTLLALKEPVGEVYCEIARKYGV----EVSPDELEQAFRRAFKAMSEAFPNFGFSSGLTPQQWWQKLVRDTF 76 (203)
T ss_pred CeEEEecCCceeeeCCCHHHHHHHHHHHhCC----CCCHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999999999999965 33332211 111 13332211 22222
Q ss_pred CC-CchhhhhhHHHHHHHHHHHh-hccCCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCC
Q 025896 82 PD-DLPRGLKFCEDKEAMFRKLA-SEQLKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDE 159 (246)
Q Consensus 82 ~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~ 159 (246)
.. .......+.......+.... .....++||+.++|++|++.|++++|+||.... ++..++++|+..+|+.++++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~-~~~~l~~~~l~~~fd~i~~s~~ 155 (203)
T TIGR02252 77 GRAGVPDPESFEKIFEELYSYFATPEPWQVYPDAIKLLKDLRERGLILGVISNFDSR-LRGLLEALGLLEYFDFVVTSYE 155 (203)
T ss_pred HhcCCCCchhHHHHHHHHHHHhcCCCcceeCcCHHHHHHHHHHCCCEEEEEeCCchh-HHHHHHHCCcHHhcceEEeecc
Confidence 11 11111111111222222111 123578999999999999999999999998765 5778999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHcCCCCCcEEEEecCh-hhhHHHHhcCCCEEE
Q 025896 160 CERAKPFPDPYFKALEMLKVSKDHTFVFEDSV-SGIKAGVAAGLPVVG 206 (246)
Q Consensus 160 ~~~~kp~~~~~~~~~~~~~~~~~~~~~igD~~-~Di~~a~~~G~~~i~ 206 (246)
.+..||+|+.|..+++++|++|+++++|||+. +|+.+|+++|+.+|+
T Consensus 156 ~~~~KP~~~~~~~~~~~~~~~~~~~~~IgD~~~~Di~~A~~aG~~~i~ 203 (203)
T TIGR02252 156 VGAEKPDPKIFQEALERAGISPEEALHIGDSLRNDYQGARAAGWRALL 203 (203)
T ss_pred cCCCCCCHHHHHHHHHHcCCChhHEEEECCCchHHHHHHHHcCCeeeC
Confidence 99999999999999999999999999999998 899999999999874
No 32
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=99.96 E-value=6.9e-29 Score=181.31 Aligned_cols=174 Identities=30% Similarity=0.521 Sum_probs=139.3
Q ss_pred EEEeCCCccccChhhHHHHHHH-HHHHhcCCCCCCCchHHHHHHhcCCCHHHHHHHhCCCCchhhhhhHHHHHHHHHHH-
Q 025896 25 VLFDVDGTLCDSDPLHHYAFRE-MLQEIGFNDGVPITEDFFVENIAGKHNIDIAKILFPDDLPRGLKFCEDKEAMFRKL- 102 (246)
Q Consensus 25 iifD~DGTL~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 102 (246)
|+||+||||+++...+.+++.. +.+.++ ...+...... ..+....+.+..++...... .....+.+.+.
T Consensus 1 iifD~dgtL~d~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 71 (176)
T PF13419_consen 1 IIFDLDGTLVDTDPAIFRALQRLALEEFG----LEISAEELRE-LFGKSYEEALERLLERFGID----PEEIQELFREYN 71 (176)
T ss_dssp EEEESBTTTEEHHHHHHHHHHHHHHHHTT----HHHHHHHHHH-HTTSHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred cEEECCCCcEeCHHHHHHHHHHHHHHHhC----CCCCHHHHHH-HhCCCHHHHHHHhhhccchh----HHHHHHHhhhhh
Confidence 7999999999999988888887 477773 3333333333 23555555555554431111 12222233332
Q ss_pred hhccCCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHcCCCCC
Q 025896 103 ASEQLKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEMLKVSKD 182 (246)
Q Consensus 103 ~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~ 182 (246)
.....+++||+.++|+.|+++|++++++||.+...++..++++|+..+|+.++++++.+..||+++.|+.++++++++|+
T Consensus 72 ~~~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~~~~~p~ 151 (176)
T PF13419_consen 72 LESKLQPYPGVRELLERLKAKGIPLVIVSNGSRERIERVLERLGLDDYFDEIISSDDVGSRKPDPDAYRRALEKLGIPPE 151 (176)
T ss_dssp HHGGEEESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHGGGCSEEEEGGGSSSSTTSHHHHHHHHHHHTSSGG
T ss_pred hhhccchhhhhhhhhhhcccccceeEEeecCCcccccccccccccccccccccccchhhhhhhHHHHHHHHHHHcCCCcc
Confidence 23578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEecChhhhHHHHhcCCCEEEE
Q 025896 183 HTFVFEDSVSGIKAGVAAGLPVVGL 207 (246)
Q Consensus 183 ~~~~igD~~~Di~~a~~~G~~~i~v 207 (246)
++++|||+..|+.+|+++|+.+|+|
T Consensus 152 ~~~~vgD~~~d~~~A~~~G~~~i~v 176 (176)
T PF13419_consen 152 EILFVGDSPSDVEAAKEAGIKTIWV 176 (176)
T ss_dssp GEEEEESSHHHHHHHHHTTSEEEEE
T ss_pred eEEEEeCCHHHHHHHHHcCCeEEeC
Confidence 9999999999999999999999986
No 33
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=99.96 E-value=3.9e-28 Score=185.22 Aligned_cols=206 Identities=18% Similarity=0.233 Sum_probs=140.6
Q ss_pred cCCcceEEEeCCCccccChhhHHHHHHHHHHHhcCC-CC-CCCchHHHH---HHhc--CC----CHH----HHHHHhCCC
Q 025896 19 LAPLEAVLFDVDGTLCDSDPLHHYAFREMLQEIGFN-DG-VPITEDFFV---ENIA--GK----HNI----DIAKILFPD 83 (246)
Q Consensus 19 ~~~~k~iifD~DGTL~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~---~~~~--~~----~~~----~~~~~~~~~ 83 (246)
+.++|+|+||+||||+|+...+..+++.+++.++.. .. .......+. ..+. .. ... ..+..++..
T Consensus 7 ~~~~k~iiFDlDGTL~D~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 86 (238)
T PRK10748 7 LGRISALTFDLDDTLYDNRPVILRTEQEALAFVQNYHPALRSFQNEDLQRLRQALREAEPEIYHDVTRWRWRAIEQAMLD 86 (238)
T ss_pred CCCceeEEEcCcccccCChHHHHHHHHHHHHHHHHhCcchhhCCHHHHHHHHHHHHHhCchhhCcHHHHHHHHHHHHHHH
Confidence 446899999999999999999888888877665211 00 011111111 1000 00 000 111111111
Q ss_pred -C--chhhhhhHHHHHHHHHHHhhccCCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCC
Q 025896 84 -D--LPRGLKFCEDKEAMFRKLASEQLKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDEC 160 (246)
Q Consensus 84 -~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~ 160 (246)
+ ..............+.. +.....++||+.++|++|++. ++++++||++.. ++.+|+..+|+.++++++.
T Consensus 87 ~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~gv~~~L~~L~~~-~~l~i~Tn~~~~-----~~~~gl~~~fd~i~~~~~~ 159 (238)
T PRK10748 87 AGLSAEEASAGADAAMINFAK-WRSRIDVPQATHDTLKQLAKK-WPLVAITNGNAQ-----PELFGLGDYFEFVLRAGPH 159 (238)
T ss_pred cCCCHHHHHHHHHHHHHHHHH-HhhcCCCCccHHHHHHHHHcC-CCEEEEECCCch-----HHHCCcHHhhceeEecccC
Confidence 1 11111111111122222 223478999999999999976 999999998754 4778999999999999999
Q ss_pred CCCCCChHHHHHHHHHcCCCCCcEEEEecCh-hhhHHHHhcCCCEEEEcCCCCh---hhhhccCCcEEecCCCCh
Q 025896 161 ERAKPFPDPYFKALEMLKVSKDHTFVFEDSV-SGIKAGVAAGLPVVGLTTRNPE---HVLLEANPTFLIKDYDDP 231 (246)
Q Consensus 161 ~~~kp~~~~~~~~~~~~~~~~~~~~~igD~~-~Di~~a~~~G~~~i~v~~~~~~---~~~~~~~~~~~i~~~~el 231 (246)
+..||+|..|..++++++++|++|+||||+. .|+.+|+++|+.++++.++... .......|+++|+++.||
T Consensus 160 ~~~KP~p~~~~~a~~~~~~~~~~~~~VGD~~~~Di~~A~~aG~~~i~v~~~~~~~~~~~~~~~~p~~~i~~l~el 234 (238)
T PRK10748 160 GRSKPFSDMYHLAAEKLNVPIGEILHVGDDLTTDVAGAIRCGMQACWINPENGDLMQTWDSRLLPHIEISRLASL 234 (238)
T ss_pred CcCCCcHHHHHHHHHHcCCChhHEEEEcCCcHHHHHHHHHCCCeEEEEcCCCccccccccccCCCCEEECCHHHH
Confidence 9999999999999999999999999999995 9999999999999999886432 111224688999999883
No 34
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.96 E-value=8.1e-28 Score=183.15 Aligned_cols=130 Identities=25% Similarity=0.333 Sum_probs=116.2
Q ss_pred cCCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHcCCCCCcEE
Q 025896 106 QLKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEMLKVSKDHTF 185 (246)
Q Consensus 106 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~ 185 (246)
..+++|++.++|++++.. ++++++||+....+...+.++|+.++||.++++++.+..||+|.+|+.+++++|++|++++
T Consensus 97 ~~~~~~~~~~~L~~l~~~-~~l~ilTNg~~~~~~~~l~~~gl~~~Fd~v~~s~~~g~~KP~~~~f~~~~~~~g~~p~~~l 175 (229)
T COG1011 97 LLPDYPEALEALKELGKK-YKLGILTNGARPHQERKLRQLGLLDYFDAVFISEDVGVAKPDPEIFEYALEKLGVPPEEAL 175 (229)
T ss_pred hCccChhHHHHHHHHHhh-ccEEEEeCCChHHHHHHHHHcCChhhhheEEEecccccCCCCcHHHHHHHHHcCCCcceEE
Confidence 488999999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCh-hhhHHHHhcCCCEEEEcCCCChhhhhccCCcEEecCCCChhhHHHHh
Q 025896 186 VFEDSV-SGIKAGVAAGLPVVGLTTRNPEHVLLEANPTFLIKDYDDPKLWSALE 238 (246)
Q Consensus 186 ~igD~~-~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i~~~~el~~~~~l~ 238 (246)
||||++ ||+.+|+.+|+.+|+++++..........+++.+.++.+ +..++.
T Consensus 176 ~VgD~~~~di~gA~~~G~~~vwi~~~~~~~~~~~~~~~~~i~~l~~--l~~~~~ 227 (229)
T COG1011 176 FVGDSLENDILGARALGMKTVWINRGGKPLPDALEAPDYEISSLAE--LLDLLE 227 (229)
T ss_pred EECCChhhhhHHHHhcCcEEEEECCCCCCCCCCccCCceEEcCHHH--HHHHHh
Confidence 999999 888999999999999988753221112568899999998 555543
No 35
>PLN02811 hydrolase
Probab=99.96 E-value=1.2e-27 Score=180.72 Aligned_cols=200 Identities=23% Similarity=0.360 Sum_probs=152.6
Q ss_pred CCCccccChhhHHHHHHHHHHHhcCCCCCCCchHHHHHHhcCCCHHHHHHHhCCC-Cc---hhhhhhHHHHHHHHHHHhh
Q 025896 29 VDGTLCDSDPLHHYAFREMLQEIGFNDGVPITEDFFVENIAGKHNIDIAKILFPD-DL---PRGLKFCEDKEAMFRKLAS 104 (246)
Q Consensus 29 ~DGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~ 104 (246)
+||||+|+...+..+|..+++++|+ ..+... ...+.|.+.......+... .. .....+.......+....
T Consensus 1 ~DGTL~Ds~~~~~~a~~~~~~~~g~----~~~~~~-~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 74 (220)
T PLN02811 1 MDGLLLDTEKFYTEVQEKILARYGK----TFDWSL-KAKMMGKKAIEAARIFVEESGLSDSLSPEDFLVEREAMLQDLF- 74 (220)
T ss_pred CCCcceecHHHHHHHHHHHHHHcCC----CCCHHH-HHHccCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH-
Confidence 6999999999999999999999954 444443 3445677766555554332 11 111222222333333322
Q ss_pred ccCCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHH-HhcCCCCcceEEEecC--CCCCCCCChHHHHHHHHHcC---
Q 025896 105 EQLKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMI-SKLGLSDFFQVVILGD--ECERAKPFPDPYFKALEMLK--- 178 (246)
Q Consensus 105 ~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l-~~~~l~~~f~~~~~~~--~~~~~kp~~~~~~~~~~~~~--- 178 (246)
....++||+.++|+.|+++|++++|+||.........+ +..++.++|+.+++++ +.+..||+|+.|..++++++
T Consensus 75 ~~~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l~~~f~~i~~~~~~~~~~~KP~p~~~~~a~~~~~~~~ 154 (220)
T PLN02811 75 PTSDLMPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELFSLMHHVVTGDDPEVKQGKPAPDIFLAAARRFEDGP 154 (220)
T ss_pred hhCCCCccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHHHHhhCCEEEECChhhccCCCCCcHHHHHHHHHhCCCC
Confidence 35788999999999999999999999999876555444 3457888999999999 77889999999999999996
Q ss_pred CCCCcEEEEecChhhhHHHHhcCCCEEEEcCCCChhhhhccCCcEEecCCCChhhHH
Q 025896 179 VSKDHTFVFEDSVSGIKAGVAAGLPVVGLTTRNPEHVLLEANPTFLIKDYDDPKLWS 235 (246)
Q Consensus 179 ~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i~~~~el~~~~ 235 (246)
++|++|++|||+..|+++|+++|+++|++.++....... ..++++++++.|+....
T Consensus 155 ~~~~~~v~IgDs~~di~aA~~aG~~~i~v~~~~~~~~~~-~~~d~vi~~~~e~~~~~ 210 (220)
T PLN02811 155 VDPGKVLVFEDAPSGVEAAKNAGMSVVMVPDPRLDKSYC-KGADQVLSSLLDFKPEE 210 (220)
T ss_pred CCccceEEEeccHhhHHHHHHCCCeEEEEeCCCCcHhhh-hchhhHhcCHhhCCHHH
Confidence 999999999999999999999999999998875333333 47899999999976665
No 36
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=99.95 E-value=1.8e-27 Score=178.87 Aligned_cols=181 Identities=22% Similarity=0.214 Sum_probs=125.1
Q ss_pred cceEEEeCCCccccChhhHHHHHHHHHHHhcCCCCCCCchHHHHHHhcCCCHHHHHHHhCCCCchhhhhhHHHHHH----
Q 025896 22 LEAVLFDVDGTLCDSDPLHHYAFREMLQEIGFNDGVPITEDFFVENIAGKHNIDIAKILFPDDLPRGLKFCEDKEA---- 97 (246)
Q Consensus 22 ~k~iifD~DGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 97 (246)
+|+|+||+||||+++.. ...+|.......| .+ .......+.+.......+.+. .+......+...+.+
T Consensus 2 ik~viFDldGtL~d~~~-~~~~~~~~~~~~g----~~--~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~ 73 (211)
T TIGR02247 2 IKAVIFDFGGVLLPSPG-VMRRWETERGLPG----LK--DFIVTVNITGPDFNPWARTFE-RGELTAEAFDGLFRHEYGL 73 (211)
T ss_pred ceEEEEecCCceecCHH-HHHHHHHHcCCCC----Cc--cHHHHHHhcCCCCChHHHHHH-cCCCCHHHHHHHHHHHhcc
Confidence 68999999999999866 5555554443332 21 222222333333222222111 111111111111111
Q ss_pred ----------HHHHHhhccCCCcccHHHHHHHHHHcCCeEEEEeCCCHHH--HHHHHHhcCCCCcceEEEecCCCCCCCC
Q 025896 98 ----------MFRKLASEQLKPISGLDKVKKWIEDRGLKRAAVTNAPREN--AELMISKLGLSDFFQVVILGDECERAKP 165 (246)
Q Consensus 98 ----------~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~--~~~~l~~~~l~~~f~~~~~~~~~~~~kp 165 (246)
.+.........++||+.++|++|+++|++++|+||+.... ....+...++.++|+.++++++.+..||
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~l~~~fd~v~~s~~~~~~KP 153 (211)
T TIGR02247 74 RLGHDVRIAPVFPLLYGENTKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPGDIMALFDAVVESCLEGLRKP 153 (211)
T ss_pred ccCCCcCchhhHHHHhccccccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhhhhHhhCCEEEEeeecCCCCC
Confidence 1111222357789999999999999999999999986543 3334445678899999999998888999
Q ss_pred ChHHHHHHHHHcCCCCCcEEEEecChhhhHHHHhcCCCEEEEcCC
Q 025896 166 FPDPYFKALEMLKVSKDHTFVFEDSVSGIKAGVAAGLPVVGLTTR 210 (246)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~ 210 (246)
+|..|+.+++++|++|++|+||||+..|+.+|+++|+.++++.++
T Consensus 154 ~p~~~~~~~~~~g~~~~~~l~i~D~~~di~aA~~aG~~~i~v~~~ 198 (211)
T TIGR02247 154 DPRIYQLMLERLGVAPEECVFLDDLGSNLKPAAALGITTIKVSDE 198 (211)
T ss_pred CHHHHHHHHHHcCCCHHHeEEEcCCHHHHHHHHHcCCEEEEECCH
Confidence 999999999999999999999999999999999999999999665
No 37
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=99.95 E-value=4.7e-26 Score=169.19 Aligned_cols=173 Identities=22% Similarity=0.280 Sum_probs=129.3
Q ss_pred ceEEEeCCCccccChhhHHHHHHHHHHHhcCCCCCCCchHHHHHHhcCCC---------HHHHHHHhCCC------Cchh
Q 025896 23 EAVLFDVDGTLCDSDPLHHYAFREMLQEIGFNDGVPITEDFFVENIAGKH---------NIDIAKILFPD------DLPR 87 (246)
Q Consensus 23 k~iifD~DGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~------~~~~ 87 (246)
.+|+||+||||+|+...+..++..+++.+|. ...+...+.... |.. .......+... ....
T Consensus 1 ~~viFD~DGTLiDs~~~~~~a~~~~~~~~g~---~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (197)
T TIGR01548 1 QALVLDMDGVMADVSQSYRRAIIDTVEHFGG---VSVTHADIDHTK-LAGNANNDWQLTHRLVVDGLNSASSERVRDAPT 76 (197)
T ss_pred CceEEecCceEEechHHHHHHHHHHHHHHcC---CCCCHHHHHHHH-HccCccCchHHHHHHHHHhhhcccchhccCCcc
Confidence 3789999999999999999999999999963 244544443332 321 11122222111 1122
Q ss_pred hhhhHHHHHHHHHHHhh---------ccCCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecC
Q 025896 88 GLKFCEDKEAMFRKLAS---------EQLKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGD 158 (246)
Q Consensus 88 ~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~ 158 (246)
...+...+...+..... ....+.+++.++|+.|++.|++++|+||.+...++..++++|+..+|+.+++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~~~f~~~~~~~ 156 (197)
T TIGR01548 77 LEAVTAQFQALYQGVGYYRDLATLGLIEDETLLTPKGLLRELHRAPKGMAVVTGRPRKDAAKFLTTHGLEILFPVQIWME 156 (197)
T ss_pred HHHHHHHHHHHHcCCcccccccchhhhccccccCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHcCchhhCCEEEeec
Confidence 33334444444432110 012445566999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCChHHHHHHHHHcCCCCCcEEEEecChhhhHHHHhc
Q 025896 159 ECERAKPFPDPYFKALEMLKVSKDHTFVFEDSVSGIKAGVAA 200 (246)
Q Consensus 159 ~~~~~kp~~~~~~~~~~~~~~~~~~~~~igD~~~Di~~a~~~ 200 (246)
+... ||+|..+..+++++++++++|++|||+.+|+.+|+++
T Consensus 157 ~~~~-KP~p~~~~~~~~~~~~~~~~~i~vGD~~~Di~aA~~a 197 (197)
T TIGR01548 157 DCPP-KPNPEPLILAAKALGVEACHAAMVGDTVDDIITGRKA 197 (197)
T ss_pred CCCC-CcCHHHHHHHHHHhCcCcccEEEEeCCHHHHHHHHhC
Confidence 8776 9999999999999999999999999999999999874
No 38
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=99.95 E-value=9.2e-26 Score=166.01 Aligned_cols=100 Identities=38% Similarity=0.663 Sum_probs=94.1
Q ss_pred CCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEE
Q 025896 107 LKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEMLKVSKDHTFV 186 (246)
Q Consensus 107 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~ 186 (246)
..++||+.++|+.|++.|++++++||+.... ...+.++|+..+|+.++++++.+..||+|..|+.++++++++|+++++
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~~ 162 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLVQELGLRDLFDVVIFSGDVGRGKPDPDIYLLALKKLGLKPEECLF 162 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHhcCCHHHCCEEEEcCCCCCCCCCHHHHHHHHHHcCCCcceEEE
Confidence 6899999999999999999999999999887 666667999999999999998899999999999999999999999999
Q ss_pred EecChhhhHHHHhcCCCEEEE
Q 025896 187 FEDSVSGIKAGVAAGLPVVGL 207 (246)
Q Consensus 187 igD~~~Di~~a~~~G~~~i~v 207 (246)
|||+..|+.+|+++|+.+|++
T Consensus 163 vgD~~~di~aA~~~G~~~i~v 183 (183)
T TIGR01509 163 VDDSPAGIEAAKAAGMHTVLV 183 (183)
T ss_pred EcCCHHHHHHHHHcCCEEEeC
Confidence 999999999999999999875
No 39
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=99.94 E-value=3.3e-26 Score=168.35 Aligned_cols=170 Identities=22% Similarity=0.299 Sum_probs=124.8
Q ss_pred ceEEEeCCCccccChhhHHHHHHHHHH-----HhcCCCCCCCchH-HHHH---HhcCCCHHHHHHHhCCCCchhhhhhHH
Q 025896 23 EAVLFDVDGTLCDSDPLHHYAFREMLQ-----EIGFNDGVPITED-FFVE---NIAGKHNIDIAKILFPDDLPRGLKFCE 93 (246)
Q Consensus 23 k~iifD~DGTL~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (246)
++|+||+||||+|+...+..++.+.+. .+|+ +.... .... ...|......... ..... .
T Consensus 1 ~~viFDlDGTL~ds~~~~~~~~~~~~~~~~~~~~g~----~~~~~~~l~~~~~~~~g~~~~~~~~~-~~~~~-------~ 68 (184)
T TIGR01993 1 DVWFFDLDNTLYPHSAGIFLQIDRNITEFVAARLKL----SEEEARVLRKDYYREYGTTLAGLMIL-HEIDA-------D 68 (184)
T ss_pred CeEEEeCCCCCCCCcccHHHHHHHHHHHHHHHHcCc----CHHHHHHHHHHHHHHHchHHHHHHHh-hCCCH-------H
Confidence 479999999999998888777776654 3432 22111 1111 0123332332221 11111 1
Q ss_pred HHHHHHHHH-hhccCCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCCC----CCCChH
Q 025896 94 DKEAMFRKL-ASEQLKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDECER----AKPFPD 168 (246)
Q Consensus 94 ~~~~~~~~~-~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~----~kp~~~ 168 (246)
.+...+.+. ......+++|+.++|++|+ ++++|+||++...+...++++|+..+|+.++++++.+. .||+|+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~g~~~~L~~L~---~~~~i~Tn~~~~~~~~~l~~~gl~~~fd~i~~~~~~~~~~~~~KP~p~ 145 (184)
T TIGR01993 69 EYLRYVHGRLPYEKLKPDPELRNLLLRLP---GRKIIFTNGDRAHARRALNRLGIEDCFDGIFCFDTANPDYLLPKPSPQ 145 (184)
T ss_pred HHHHHHhccCCHHhCCCCHHHHHHHHhCC---CCEEEEeCCCHHHHHHHHHHcCcHhhhCeEEEeecccCccCCCCCCHH
Confidence 122222221 1124678999999999998 47999999999999999999999999999999988776 599999
Q ss_pred HHHHHHHHcCCCCCcEEEEecChhhhHHHHhcCCCEEEE
Q 025896 169 PYFKALEMLKVSKDHTFVFEDSVSGIKAGVAAGLPVVGL 207 (246)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v 207 (246)
+|+.+++++|++|+++++|||+..|+.+|+++|+++|+|
T Consensus 146 ~~~~~~~~~~~~~~~~l~vgD~~~di~aA~~~G~~~i~v 184 (184)
T TIGR01993 146 AYEKALREAGVDPERAIFFDDSARNIAAAKALGMKTVLV 184 (184)
T ss_pred HHHHHHHHhCCCccceEEEeCCHHHHHHHHHcCCEEeeC
Confidence 999999999999999999999999999999999999875
No 40
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=99.94 E-value=5.7e-25 Score=162.03 Aligned_cols=204 Identities=31% Similarity=0.475 Sum_probs=167.6
Q ss_pred CCcceEEEeCCCccccChhhHHHHHHHHHHHhcCCCCCCCchHHHHHHhcCCCHHHHHHHhCCC--CchhhhhhHHHHHH
Q 025896 20 APLEAVLFDVDGTLCDSDPLHHYAFREMLQEIGFNDGVPITEDFFVENIAGKHNIDIAKILFPD--DLPRGLKFCEDKEA 97 (246)
Q Consensus 20 ~~~k~iifD~DGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 97 (246)
..+-+++||+||||+|++..+.++++..+.++| ..+++... ....|+...+..+.+... ......++......
T Consensus 8 ~~~~~~lfD~dG~lvdte~~y~~~~~~~~~~yg----k~~~~~~~-~~~mG~~~~eaa~~~~~~~~dp~s~ee~~~e~~~ 82 (222)
T KOG2914|consen 8 LKVSACLFDMDGTLVDTEDLYTEAWQELLDRYG----KPYPWDVK-VKSMGKRTSEAARLFVKKLPDPVSREEFNKEEEE 82 (222)
T ss_pred cceeeEEEecCCcEEecHHHHHHHHHHHHHHcC----CCChHHHH-HHHcCCCHHHHHHHHHhhcCCCCCHHHHHHHHHH
Confidence 457799999999999999999999999999994 44666655 447788888888888633 33344455555544
Q ss_pred HHHHHhhccCCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcC-CCCcceEEEe--cCCCCCCCCChHHHHHHH
Q 025896 98 MFRKLASEQLKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLG-LSDFFQVVIL--GDECERAKPFPDPYFKAL 174 (246)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~-l~~~f~~~~~--~~~~~~~kp~~~~~~~~~ 174 (246)
...... ....+.||+.++++.|+.+|++++++|+.+......++.+++ +...|+.++. ..++..+||+|++|..++
T Consensus 83 ~~~~~~-~~~~~~PGa~kLv~~L~~~gip~alat~s~~~~~~~k~~~~~~~~~~f~~~v~~d~~~v~~gKP~Pdi~l~A~ 161 (222)
T KOG2914|consen 83 ILDRLF-MNSILMPGAEKLVNHLKNNGIPVALATSSTSASFELKISRHEDIFKNFSHVVLGDDPEVKNGKPDPDIYLKAA 161 (222)
T ss_pred HHHHhc-cccccCCcHHHHHHHHHhCCCCeeEEecCCcccHHHHHHHhhHHHHhcCCCeecCCccccCCCCCchHHHHHH
Confidence 444443 468899999999999999999999999999999999998886 7778888777 566788899999999999
Q ss_pred HHcCCCC-CcEEEEecChhhhHHHHhcCCCEEEEcCCCChhhhhccCCcEEecCCCC
Q 025896 175 EMLKVSK-DHTFVFEDSVSGIKAGVAAGLPVVGLTTRNPEHVLLEANPTFLIKDYDD 230 (246)
Q Consensus 175 ~~~~~~~-~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i~~~~e 230 (246)
+.+|..+ ++|++++|++..+++|+++|++++++.... -.......++.+++++.+
T Consensus 162 ~~l~~~~~~k~lVfeds~~Gv~aa~aagm~vi~v~~~~-~~~~~~~~~~~~~~~~~~ 217 (222)
T KOG2914|consen 162 KRLGVPPPSKCLVFEDSPVGVQAAKAAGMQVVGVATPD-LSNLFSAGATLILESLED 217 (222)
T ss_pred HhcCCCCccceEEECCCHHHHHHHHhcCCeEEEecCCC-cchhhhhccceecccccc
Confidence 9999999 999999999999999999999999998743 333445678888888876
No 41
>PHA02597 30.2 hypothetical protein; Provisional
Probab=99.94 E-value=1.3e-25 Score=166.96 Aligned_cols=188 Identities=19% Similarity=0.178 Sum_probs=128.1
Q ss_pred CcceEEEeCCCccccChhhHHHHHHHHHHHhcCCCCCCCchHHHHHHhcCCCHHHHHHHhCCCCchhhhhhHHHHHHHHH
Q 025896 21 PLEAVLFDVDGTLCDSDPLHHYAFREMLQEIGFNDGVPITEDFFVENIAGKHNIDIAKILFPDDLPRGLKFCEDKEAMFR 100 (246)
Q Consensus 21 ~~k~iifD~DGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (246)
++|+|+||+||||+|+. .++..+++++|+ +. +.+.... |..........+.........+...+. .
T Consensus 1 m~k~viFDlDGTLiD~~----~~~~~~~~~~g~----~~--~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 66 (197)
T PHA02597 1 MKPTILTDVDGVLLSWQ----SGLPYFAQKYNI----PT--DHILKMI-QDERFRDPGELFGCDQELAKKLIEKYN---N 66 (197)
T ss_pred CCcEEEEecCCceEchh----hccHHHHHhcCC----CH--HHHHHHH-hHhhhcCHHHHhcccHHHHHHHhhhhh---H
Confidence 37899999999999944 456777888843 22 3333333 222111112222211112222222222 1
Q ss_pred HHhhccCCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCC----cceEEEecCCCCCCCCChHHHHHHHHH
Q 025896 101 KLASEQLKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSD----FFQVVILGDECERAKPFPDPYFKALEM 176 (246)
Q Consensus 101 ~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~----~f~~~~~~~~~~~~kp~~~~~~~~~~~ 176 (246)
........++||+.++|++|++. ++++++||.+.......++.+++.. +|+.+++++. .+|+|+.+..++++
T Consensus 67 ~~~~~~~~~~pG~~e~L~~L~~~-~~~~i~Tn~~~~~~~~~~~~~~l~~~f~~~f~~i~~~~~---~~~kp~~~~~a~~~ 142 (197)
T PHA02597 67 SDFIRYLSAYDDALDVINKLKED-YDFVAVTALGDSIDALLNRQFNLNALFPGAFSEVLMCGH---DESKEKLFIKAKEK 142 (197)
T ss_pred HHHHHhccCCCCHHHHHHHHHhc-CCEEEEeCCccchhHHHHhhCCHHHhCCCcccEEEEecc---CcccHHHHHHHHHH
Confidence 23334577999999999999997 5788889877666666667777654 4566666665 36778999999999
Q ss_pred cCCCCCcEEEEecChhhhHHHHhc--CCCEEEEcCCCChhhhhccCCcEEecCCCCh
Q 025896 177 LKVSKDHTFVFEDSVSGIKAGVAA--GLPVVGLTTRNPEHVLLEANPTFLIKDYDDP 231 (246)
Q Consensus 177 ~~~~~~~~~~igD~~~Di~~a~~~--G~~~i~v~~~~~~~~~~~~~~~~~i~~~~el 231 (246)
+| |++++||||+.+|+.+|+++ |++++++.+++. .....+++++.|+.|+
T Consensus 143 ~~--~~~~v~vgDs~~di~aA~~a~~Gi~~i~~~~~~~---~~~~~~~~~~~~~~~~ 194 (197)
T PHA02597 143 YG--DRVVCFVDDLAHNLDAAHEALSQLPVIHMLRGER---DHIPKLAHRVKSWNDI 194 (197)
T ss_pred hC--CCcEEEeCCCHHHHHHHHHHHcCCcEEEecchhh---ccccchhhhhccHHHH
Confidence 99 88899999999999999999 999999988864 2223566888888874
No 42
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=99.94 E-value=2e-25 Score=166.04 Aligned_cols=107 Identities=15% Similarity=0.201 Sum_probs=96.9
Q ss_pred CCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHh-cCCCCcceEEEecCCCCCCCCChHHHHHHHHHcCCCCCcEE
Q 025896 107 LKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISK-LGLSDFFQVVILGDECERAKPFPDPYFKALEMLKVSKDHTF 185 (246)
Q Consensus 107 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~-~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~ 185 (246)
..++||+.++|+.|++.|++++|+||++.......+.. .++..+|+.++++++.+..||+|+.|+.+++++|++|++|+
T Consensus 83 ~~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~~~~~p~~~l 162 (199)
T PRK09456 83 VALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEVRAAADHIYLSQDLGMRKPEARIYQHVLQAEGFSAADAV 162 (199)
T ss_pred hccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhchhHHHhcCEEEEecccCCCCCCHHHHHHHHHHcCCChhHeE
Confidence 45899999999999999999999999987776665554 47888999999999999999999999999999999999999
Q ss_pred EEecChhhhHHHHhcCCCEEEEcCCCCh
Q 025896 186 VFEDSVSGIKAGVAAGLPVVGLTTRNPE 213 (246)
Q Consensus 186 ~igD~~~Di~~a~~~G~~~i~v~~~~~~ 213 (246)
||||+..|+.+|+++|+.++++..+...
T Consensus 163 ~vgD~~~di~aA~~aG~~~i~~~~~~~~ 190 (199)
T PRK09456 163 FFDDNADNIEAANALGITSILVTDKQTI 190 (199)
T ss_pred EeCCCHHHHHHHHHcCCEEEEecCCccH
Confidence 9999999999999999999999776433
No 43
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.93 E-value=4.7e-25 Score=162.94 Aligned_cols=189 Identities=20% Similarity=0.275 Sum_probs=139.3
Q ss_pred ccCCcceEEEeCCCccccChhhHHHHHHHHHHHhcCCCCCCCchHHHHH----Hh-------------cC-CCHHHHHHH
Q 025896 18 KLAPLEAVLFDVDGTLCDSDPLHHYAFREMLQEIGFNDGVPITEDFFVE----NI-------------AG-KHNIDIAKI 79 (246)
Q Consensus 18 ~~~~~k~iifD~DGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-------------~~-~~~~~~~~~ 79 (246)
..+++|+|+||++|||+.........+....+.+|+. ........ .+ .| .+....+..
T Consensus 3 ~~~~iravtfD~~~tLl~~~~~~~~~y~~i~~~~gl~----~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~l~~~~ww~~ 78 (237)
T KOG3085|consen 3 ELMRIRAVTFDAGGTLLATLPPVMEVYCEIAEAYGLE----YDDSLIETIFRKDFKKMSEKGPFFGLYSGELTLSQWWPK 78 (237)
T ss_pred cccceEEEEEeCCCceeecCCccHHHHHHHHHHhCCC----CCHHHHhHhhhHHHHhhcccCCcccccCCcccHHHHHHH
Confidence 4678999999999999998888999999999999654 22211111 11 11 122222222
Q ss_pred hC----CC-CchhhhhhHHHH-HHHHHHHhhccCCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceE
Q 025896 80 LF----PD-DLPRGLKFCEDK-EAMFRKLASEQLKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQV 153 (246)
Q Consensus 80 ~~----~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~ 153 (246)
+. .. ......+....+ ...+.........+.+++.+++++||+.|..++++||.+.... ..+..+++..+||.
T Consensus 79 lv~~~f~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~lq~lR~~g~~l~iisN~d~r~~-~~l~~~~l~~~fD~ 157 (237)
T KOG3085|consen 79 LVESTFGKAGIDYEEELLENFSFRLFSTFAPSAWKYLDGMQELLQKLRKKGTILGIISNFDDRLR-LLLLPLGLSAYFDF 157 (237)
T ss_pred HHHHHhccccchhHHHHHhhhhhheeccccccCceeccHHHHHHHHHHhCCeEEEEecCCcHHHH-HHhhccCHHHhhhh
Confidence 22 21 111111111111 1111221123567788899999999999999999999976544 88888999999999
Q ss_pred EEecCCCCCCCCChHHHHHHHHHcCCCCCcEEEEecCh-hhhHHHHhcCCCEEEEcCCC
Q 025896 154 VILGDECERAKPFPDPYFKALEMLKVSKDHTFVFEDSV-SGIKAGVAAGLPVVGLTTRN 211 (246)
Q Consensus 154 ~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~igD~~-~Di~~a~~~G~~~i~v~~~~ 211 (246)
++.|...+..||+|.+|+.++++++++|++|+||||+. ||+++|+++|+.++.|.+..
T Consensus 158 vv~S~e~g~~KPDp~If~~al~~l~v~Pee~vhIgD~l~nD~~gA~~~G~~ailv~~~~ 216 (237)
T KOG3085|consen 158 VVESCEVGLEKPDPRIFQLALERLGVKPEECVHIGDLLENDYEGARNLGWHAILVDNSI 216 (237)
T ss_pred hhhhhhhccCCCChHHHHHHHHHhCCChHHeEEecCccccccHhHHHcCCEEEEEcccc
Confidence 99999999999999999999999999999999999999 99999999999999997663
No 44
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=99.93 E-value=3.3e-24 Score=153.24 Aligned_cols=154 Identities=28% Similarity=0.442 Sum_probs=119.8
Q ss_pred eEEEeCCCccccChhhHHHHHHHHHHHhcCCCCCCCchHHHHHHhcCCCHHHHHHHhCCCCchhhhhhHHHHHHHHHHHh
Q 025896 24 AVLFDVDGTLCDSDPLHHYAFREMLQEIGFNDGVPITEDFFVENIAGKHNIDIAKILFPDDLPRGLKFCEDKEAMFRKLA 103 (246)
Q Consensus 24 ~iifD~DGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (246)
+|+||+||||+|+...+..++..++++++. +...+ ....|....... .....+.++. . .
T Consensus 1 ~iifD~DGTL~d~~~~~~~~~~~~~~~~~~------~~~~~-~~~~g~~~~~~~------------~~~~~~~~~~-~-~ 59 (154)
T TIGR01549 1 AILFDIDGTLVDSSFAIRRAFEETLEEFGE------DFQAL-KALRGLAEELLY------------RIATSFEELL-G-Y 59 (154)
T ss_pred CeEecCCCcccccHHHHHHHHHHHHHHhcc------cHHHH-HHHHccChHHHH------------HHHHHHHHHh-C-c
Confidence 489999999999999999999999999842 22222 222233221111 0111111111 1 1
Q ss_pred hccCCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHcCCCCCc
Q 025896 104 SEQLKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEMLKVSKDH 183 (246)
Q Consensus 104 ~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~ 183 (246)
......+||+.++|+.|+++|++++|+||+....+...++.+ +..+|+.++++++.+ .||+|+.|..+++++++++ +
T Consensus 60 ~~~~~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~-l~~~f~~i~~~~~~~-~Kp~~~~~~~~~~~~~~~~-~ 136 (154)
T TIGR01549 60 DAEEAYIRGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRKH-LGDYFDLILGSDEFG-AKPEPEIFLAALESLGLPP-E 136 (154)
T ss_pred chhheeccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHHH-HHhcCcEEEecCCCC-CCcCHHHHHHHHHHcCCCC-C
Confidence 224566799999999999999999999999999999999887 778899999988877 9999999999999999999 9
Q ss_pred EEEEecChhhhHHHHhcC
Q 025896 184 TFVFEDSVSGIKAGVAAG 201 (246)
Q Consensus 184 ~~~igD~~~Di~~a~~~G 201 (246)
|++|||+..|+.+|+++|
T Consensus 137 ~l~iGDs~~Di~aa~~aG 154 (154)
T TIGR01549 137 VLHVGDNLNDIEGARNAG 154 (154)
T ss_pred EEEEeCCHHHHHHHHHcc
Confidence 999999999999999987
No 45
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=99.92 E-value=1.1e-23 Score=159.17 Aligned_cols=188 Identities=19% Similarity=0.181 Sum_probs=126.6
Q ss_pred cCCcceEEEeCCCccccChhhHHHHHHHHHHHhcCCCCCCCchHHH-HHHhcCC-CHHHHHHHhCCC-CchhhhhhHHHH
Q 025896 19 LAPLEAVLFDVDGTLCDSDPLHHYAFREMLQEIGFNDGVPITEDFF-VENIAGK-HNIDIAKILFPD-DLPRGLKFCEDK 95 (246)
Q Consensus 19 ~~~~k~iifD~DGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~ 95 (246)
++++|+++|||||||++++ .+..+++.+|. ....... .....|. .........+.. ....
T Consensus 11 ~~~~k~iiFD~DGTL~~~~-----~~~~l~~~~g~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-------- 73 (219)
T TIGR00338 11 LRSKKLVVFDMDSTLINAE-----TIDEIAKIAGV----EEEVSEITERAMRGELDFKASLRERVALLKGLP-------- 73 (219)
T ss_pred hccCCEEEEeCcccCCCch-----HHHHHHHHhCC----HHHHHHHHHHHHcCCCCHHHHHHHHHHHhCCCC--------
Confidence 5678999999999999975 34566666743 2222211 2222221 111111111110 0000
Q ss_pred HHHHHHHhhccCCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEec-------C---CCCCCCC
Q 025896 96 EAMFRKLASEQLKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILG-------D---ECERAKP 165 (246)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~-------~---~~~~~kp 165 (246)
.+.+... ....+++||+.++|+.|+++|++++|+|++....++..++++|+..+|...+.. . .....+|
T Consensus 74 ~~~~~~~-~~~~~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (219)
T TIGR00338 74 VELLKEV-RENLPLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLDAAFANRLEVEDGKLTGLVEGPIVDASY 152 (219)
T ss_pred HHHHHHH-HhcCCcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEeeEEEEECCEEEEEecCcccCCcc
Confidence 0111222 234679999999999999999999999999999999999999998888543221 1 1123467
Q ss_pred ChHHHHHHHHHcCCCCCcEEEEecChhhhHHHHhcCCCEEEEcCCCChhhhhccCCcEEecCCC
Q 025896 166 FPDPYFKALEMLKVSKDHTFVFEDSVSGIKAGVAAGLPVVGLTTRNPEHVLLEANPTFLIKDYD 229 (246)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i~~~~ 229 (246)
++..++.+++++++++++|++|||+.+|+++|+.+|+.+++- ..+.....+++++.+.+
T Consensus 153 k~~~~~~~~~~~~~~~~~~i~iGDs~~Di~aa~~ag~~i~~~-----~~~~~~~~a~~~i~~~~ 211 (219)
T TIGR00338 153 KGKTLLILLRKEGISPENTVAVGDGANDLSMIKAAGLGIAFN-----AKPKLQQKADICINKKD 211 (219)
T ss_pred cHHHHHHHHHHcCCCHHHEEEEECCHHHHHHHHhCCCeEEeC-----CCHHHHHhchhccCCCC
Confidence 899999999999999999999999999999999999986432 22333346788887554
No 46
>PLN02954 phosphoserine phosphatase
Probab=99.92 E-value=8.6e-24 Score=160.36 Aligned_cols=194 Identities=17% Similarity=0.195 Sum_probs=129.7
Q ss_pred cCCcceEEEeCCCccccChhhHHHHHHHHHHHhcCCCCCCCchHHHHHHhcC--CCHHHHHHHhCCCCchhhhhhHHHHH
Q 025896 19 LAPLEAVLFDVDGTLCDSDPLHHYAFREMLQEIGFNDGVPITEDFFVENIAG--KHNIDIAKILFPDDLPRGLKFCEDKE 96 (246)
Q Consensus 19 ~~~~k~iifD~DGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (246)
.+++|+|+|||||||++++. +..+++.+|. ..........+.+ ....+.+...+..... ......
T Consensus 9 ~~~~k~viFDfDGTL~~~~~-----~~~~~~~~g~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~----~~~~~~ 75 (224)
T PLN02954 9 WRSADAVCFDVDSTVCVDEG-----IDELAEFCGA----GEAVAEWTAKAMGGSVPFEEALAARLSLFKP----SLSQVE 75 (224)
T ss_pred HccCCEEEEeCCCcccchHH-----HHHHHHHcCC----hHHHHHHHHHHHCCCCCHHHHHHHHHHHcCC----CHHHHH
Confidence 35689999999999999753 4667777743 2233333333323 2222323222211000 111112
Q ss_pred HHHHHHhhccCCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCC--CcceEEEe--------cCC----CCC
Q 025896 97 AMFRKLASEQLKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLS--DFFQVVIL--------GDE----CER 162 (246)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~--~~f~~~~~--------~~~----~~~ 162 (246)
..+.. ....++||+.++|+.|+++|++++|+|++....++..++.+|+. .+|...+. +.. ...
T Consensus 76 ~~~~~---~~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~gi~~~~~~~~~~~~~~~g~~~g~~~~~~~~~ 152 (224)
T PLN02954 76 EFLEK---RPPRLSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAILGIPPENIFANQILFGDSGEYAGFDENEPTSR 152 (224)
T ss_pred HHHHH---ccCCCCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHhCCChhhEEEeEEEEcCCCcEECccCCCcccC
Confidence 22222 13568999999999999999999999999999999999999996 45643221 111 123
Q ss_pred CCCChHHHHHHHHHcCCCCCcEEEEecChhhhHHHHhcCCCEEEEcCCCChhhhhccCCcEEecCCCC
Q 025896 163 AKPFPDPYFKALEMLKVSKDHTFVFEDSVSGIKAGVAAGLPVVGLTTRNPEHVLLEANPTFLIKDYDD 230 (246)
Q Consensus 163 ~kp~~~~~~~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i~~~~e 230 (246)
.++++..++.++++++. +++++|||+.+|+.+++.+|+.++...+++...+.....++++++++.+
T Consensus 153 ~~~K~~~i~~~~~~~~~--~~~i~iGDs~~Di~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~e 218 (224)
T PLN02954 153 SGGKAEAVQHIKKKHGY--KTMVMIGDGATDLEARKPGGADLFIGYGGVQVREAVAAKADWFVTDFQD 218 (224)
T ss_pred CccHHHHHHHHHHHcCC--CceEEEeCCHHHHHhhhcCCCCEEEecCCCccCHHHHhcCCEEECCHHH
Confidence 46788899999998875 6899999999999999998888665544433333345678999999988
No 47
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=99.92 E-value=3.3e-24 Score=156.98 Aligned_cols=130 Identities=23% Similarity=0.323 Sum_probs=105.7
Q ss_pred cCCCcccHHHHHHHHHHcCCeEEEEeCCCH---------------HHHHHHHHhcCCCCcceEEEec-----CCCCCCCC
Q 025896 106 QLKPISGLDKVKKWIEDRGLKRAAVTNAPR---------------ENAELMISKLGLSDFFQVVILG-----DECERAKP 165 (246)
Q Consensus 106 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~---------------~~~~~~l~~~~l~~~f~~~~~~-----~~~~~~kp 165 (246)
...++||+.++|++|++.|++++|+||.+. ..+...++++|+. |+.++.+ +..+..||
T Consensus 27 ~~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~--f~~i~~~~~~~~~~~~~~KP 104 (181)
T PRK08942 27 EWIPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLNALHEKMDWSLADRGGR--LDGIYYCPHHPEDGCDCRKP 104 (181)
T ss_pred HeEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCCc--cceEEECCCCCCCCCcCCCC
Confidence 367899999999999999999999999862 2344556677773 7777654 33567899
Q ss_pred ChHHHHHHHHHcCCCCCcEEEEecChhhhHHHHhcCCCEEEEcCCCChhhhhccCC--cEEecCCCChhhHHHHhh
Q 025896 166 FPDPYFKALEMLKVSKDHTFVFEDSVSGIKAGVAAGLPVVGLTTRNPEHVLLEANP--TFLIKDYDDPKLWSALEE 239 (246)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~--~~~i~~~~el~~~~~l~~ 239 (246)
+|..|..++++++++++++++|||+.+|+.+|+++|+.++++.++..........+ +++++++.+ +..++.+
T Consensus 105 ~p~~~~~~~~~l~~~~~~~~~VgDs~~Di~~A~~aG~~~i~v~~g~~~~~~~~~~~~~~~ii~~l~e--l~~~l~~ 178 (181)
T PRK08942 105 KPGMLLSIAERLNIDLAGSPMVGDSLRDLQAAAAAGVTPVLVRTGKGVTTLAEGAAPGTWVLDSLAD--LPQALKK 178 (181)
T ss_pred CHHHHHHHHHHcCCChhhEEEEeCCHHHHHHHHHCCCeEEEEcCCCCchhhhcccCCCceeecCHHH--HHHHHHh
Confidence 99999999999999999999999999999999999999999988754433344456 899999988 5565543
No 48
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=99.92 E-value=9.8e-24 Score=153.66 Aligned_cols=124 Identities=19% Similarity=0.292 Sum_probs=102.8
Q ss_pred cCCCcccHHHHHHHHHHcCCeEEEEeCCCH---------------HHHHHHHHhcCCCCcceEEEecC-----------C
Q 025896 106 QLKPISGLDKVKKWIEDRGLKRAAVTNAPR---------------ENAELMISKLGLSDFFQVVILGD-----------E 159 (246)
Q Consensus 106 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~---------------~~~~~~l~~~~l~~~f~~~~~~~-----------~ 159 (246)
...++||+.++|++|+++|++++|+||.+. ..+...+.++++. |+.++.+. .
T Consensus 24 ~~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~i~~~~~~~~~~~~~~~~ 101 (176)
T TIGR00213 24 NFEFIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQLTEWMDWSLAERDVD--LDGIYYCPHHPEGVEEFRQV 101 (176)
T ss_pred HeEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCCC--ccEEEECCCCCcccccccCC
Confidence 477899999999999999999999999974 3444566666766 77765542 3
Q ss_pred CCCCCCChHHHHHHHHHcCCCCCcEEEEecChhhhHHHHhcCCCE-EEEcCCCChhhhhccCCcEEecCCCCh
Q 025896 160 CERAKPFPDPYFKALEMLKVSKDHTFVFEDSVSGIKAGVAAGLPV-VGLTTRNPEHVLLEANPTFLIKDYDDP 231 (246)
Q Consensus 160 ~~~~kp~~~~~~~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~-i~v~~~~~~~~~~~~~~~~~i~~~~el 231 (246)
....||+|++|..+++++++++++++||||+.+|+++|+++|+.+ +++.++..........|+++++++.|+
T Consensus 102 ~~~~KP~p~~~~~a~~~~~~~~~~~v~VGDs~~Di~aA~~aG~~~~i~v~~g~~~~~~~~~~ad~~i~~~~el 174 (176)
T TIGR00213 102 CDCRKPKPGMLLQARKELHIDMAQSYMVGDKLEDMQAGVAAKVKTNVLVRTGKPITPEAENIADWVLNSLADL 174 (176)
T ss_pred CCCCCCCHHHHHHHHHHcCcChhhEEEEcCCHHHHHHHHHCCCcEEEEEecCCcccccccccCCEEeccHHHh
Confidence 456899999999999999999999999999999999999999998 899988644333335699999999884
No 49
>PRK06769 hypothetical protein; Validated
Probab=99.91 E-value=3.8e-24 Score=154.94 Aligned_cols=126 Identities=17% Similarity=0.224 Sum_probs=101.8
Q ss_pred cCCCcccHHHHHHHHHHcCCeEEEEeCCCHH--------HHHHHHHhcCCCCcceEEE-ecCCCCCCCCChHHHHHHHHH
Q 025896 106 QLKPISGLDKVKKWIEDRGLKRAAVTNAPRE--------NAELMISKLGLSDFFQVVI-LGDECERAKPFPDPYFKALEM 176 (246)
Q Consensus 106 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~--------~~~~~l~~~~l~~~f~~~~-~~~~~~~~kp~~~~~~~~~~~ 176 (246)
...++||+.++|++|++.|++++|+||.+.. .....++.+|+..+|.... .++..+..||+|+.|..++++
T Consensus 26 ~~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~KP~p~~~~~~~~~ 105 (173)
T PRK06769 26 SFTLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQELKGFGFDDIYLCPHKHGDGCECRKPSTGMLLQAAEK 105 (173)
T ss_pred HeEECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHHHHhCCcCEEEECcCCCCCCCCCCCCCHHHHHHHHHH
Confidence 3668999999999999999999999998641 2344466777665544333 345557899999999999999
Q ss_pred cCCCCCcEEEEecChhhhHHHHhcCCCEEEEcCCCCh-------hhhhccCCcEEecCCCCh
Q 025896 177 LKVSKDHTFVFEDSVSGIKAGVAAGLPVVGLTTRNPE-------HVLLEANPTFLIKDYDDP 231 (246)
Q Consensus 177 ~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~-------~~~~~~~~~~~i~~~~el 231 (246)
++++|++|+||||+.+|+.+|+++|+.++++.++... ..+....|+++++++.|+
T Consensus 106 l~~~p~~~i~IGD~~~Di~aA~~aGi~~i~v~~g~~~~~~~~~~~~l~~~~~~~~~~~~~el 167 (173)
T PRK06769 106 HGLDLTQCAVIGDRWTDIVAAAKVNATTILVRTGAGYDALHTYRDKWAHIEPNYIAENFEDA 167 (173)
T ss_pred cCCCHHHeEEEcCCHHHHHHHHHCCCeEEEEecCCCchhhhhhhcccccCCCcchhhCHHHH
Confidence 9999999999999999999999999999999987533 223345789999999883
No 50
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=99.91 E-value=1.5e-22 Score=150.89 Aligned_cols=141 Identities=13% Similarity=0.054 Sum_probs=109.0
Q ss_pred hhhhhHHH-HHHHHHHHhhccCCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhc---CCCCcceEEEecCCCCC
Q 025896 87 RGLKFCED-KEAMFRKLASEQLKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKL---GLSDFFQVVILGDECER 162 (246)
Q Consensus 87 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~---~l~~~f~~~~~~~~~~~ 162 (246)
....+-.. +...|... .....++||+.++|++|+++|++++|+||++...++..+++. ++.++|+.++... ..
T Consensus 74 ~lk~lqg~iw~~~Y~~~-~~~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~~~~~L~~~f~~~fd~~--~g 150 (220)
T TIGR01691 74 PLKTLQGLIWRQGYESG-ELTSHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHSDAGNLTPYFSGYFDTT--VG 150 (220)
T ss_pred hHHHHHHHHHHHHHhcC-CcccCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhccccchhhhcceEEEeC--cc
Confidence 33333333 44444432 235679999999999999999999999999998888888875 6777888776532 23
Q ss_pred CCCChHHHHHHHHHcCCCCCcEEEEecChhhhHHHHhcCCCEEEEcCCCChhhhhc-cCCcEEecCCCC
Q 025896 163 AKPFPDPYFKALEMLKVSKDHTFVFEDSVSGIKAGVAAGLPVVGLTTRNPEHVLLE-ANPTFLIKDYDD 230 (246)
Q Consensus 163 ~kp~~~~~~~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~-~~~~~~i~~~~e 230 (246)
.||+|+.|..+++++|++|++++||||+..|+.+|+++|+.++++.++.+...... .....++.||++
T Consensus 151 ~KP~p~~y~~i~~~lgv~p~e~lfVgDs~~Di~AA~~AG~~ti~v~r~g~~~~~~~~~~~~~~~~~~~~ 219 (220)
T TIGR01691 151 LKTEAQSYVKIAGQLGSPPREILFLSDIINELDAARKAGLHTGQLVRPGNDPVVDPSFPVYPQFPDLNA 219 (220)
T ss_pred cCCCHHHHHHHHHHhCcChhHEEEEeCCHHHHHHHHHcCCEEEEEECCCCCCCCcccCCCCCeecCccc
Confidence 79999999999999999999999999999999999999999999988764421111 112457778765
No 51
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=99.90 E-value=1.1e-22 Score=151.92 Aligned_cols=105 Identities=17% Similarity=0.152 Sum_probs=89.4
Q ss_pred cCCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCCCCCC----------ChHHHHHHHH
Q 025896 106 QLKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDECERAKP----------FPDPYFKALE 175 (246)
Q Consensus 106 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp----------~~~~~~~~~~ 175 (246)
...++||+.++|+.|+++|++++|+|++....++..++++|+..+|...+.+++.+..+| ++..+..+++
T Consensus 78 ~~~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~g~~~p~~~~~~~~~~k~~~~~~~~~ 157 (201)
T TIGR01491 78 EISLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNPDYVYSNELVFDEKGFIQPDGIVRVTFDNKGEAVERLKR 157 (201)
T ss_pred hCCCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhCCCeEEEEEEEEcCCCeEecceeeEEccccHHHHHHHHHH
Confidence 468999999999999999999999999999999999999999888877666544433333 3367888999
Q ss_pred HcCCCCCcEEEEecChhhhHHHHhcCCCEEEEcCC
Q 025896 176 MLKVSKDHTFVFEDSVSGIKAGVAAGLPVVGLTTR 210 (246)
Q Consensus 176 ~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~ 210 (246)
+++++++++++|||+.+|+++++.+|++++....+
T Consensus 158 ~~~~~~~~~i~iGDs~~D~~~a~~ag~~~a~~~~~ 192 (201)
T TIGR01491 158 ELNPSLTETVAVGDSKNDLPMFEVADISISLGDEG 192 (201)
T ss_pred HhCCCHHHEEEEcCCHhHHHHHHhcCCeEEECCCc
Confidence 99999999999999999999999999987665443
No 52
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=99.90 E-value=2.2e-22 Score=158.23 Aligned_cols=198 Identities=16% Similarity=0.123 Sum_probs=132.1
Q ss_pred ccCCcceEEEeCCCccccChhhHHHHHHHHHHHhcCCCCCCCchHHHHH-HhcCC-CHHHHHHHhCCCCchhhhhhHHHH
Q 025896 18 KLAPLEAVLFDVDGTLCDSDPLHHYAFREMLQEIGFNDGVPITEDFFVE-NIAGK-HNIDIAKILFPDDLPRGLKFCEDK 95 (246)
Q Consensus 18 ~~~~~k~iifD~DGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 95 (246)
...++++|+|||||||+.. +.+..+.+..|. ......... ...|. ...+.+...+.. .....
T Consensus 106 ~~~~~~LvvfDmDGTLI~~-----e~i~eia~~~g~----~~~v~~it~~~m~Geldf~esl~~rv~~----l~g~~--- 169 (322)
T PRK11133 106 HLRTPGLLVMDMDSTAIQI-----ECIDEIAKLAGT----GEEVAEVTERAMRGELDFEASLRQRVAT----LKGAD--- 169 (322)
T ss_pred cccCCCEEEEECCCCCcch-----HHHHHHHHHhCC----chHHHHHHHHHHcCCcCHHHHHHHHHHH----hCCCC---
Confidence 3467899999999999942 456666666643 222222222 22222 222222111110 00000
Q ss_pred HHHHHHHhhccCCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceE-------EEecC---CCCCCCC
Q 025896 96 EAMFRKLASEQLKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQV-------VILGD---ECERAKP 165 (246)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~-------~~~~~---~~~~~kp 165 (246)
...+.. .....+++||+.++|+.|++.|++++|+|++.....+..++++++...+.. .+++. +....+|
T Consensus 170 ~~il~~-v~~~l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~Lgld~~~an~lei~dg~ltg~v~g~iv~~k~ 248 (322)
T PRK11133 170 ANILQQ-VRENLPLMPGLTELVLKLQALGWKVAIASGGFTYFADYLRDKLRLDAAVANELEIMDGKLTGNVLGDIVDAQY 248 (322)
T ss_pred HHHHHH-HHHhCCCChhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHcCCCeEEEeEEEEECCEEEeEecCccCCccc
Confidence 011111 123578999999999999999999999999998888888899998764432 22221 2234689
Q ss_pred ChHHHHHHHHHcCCCCCcEEEEecChhhhHHHHhcCCCEEEEcCCCChhhhhccCCcEEecCCCChhhHHHH
Q 025896 166 FPDPYFKALEMLKVSKDHTFVFEDSVSGIKAGVAAGLPVVGLTTRNPEHVLLEANPTFLIKDYDDPKLWSAL 237 (246)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i~~~~el~~~~~l 237 (246)
+++.++.+++++|+++++|++|||+.||++|++.+|+.+++ ++.+.....++++++...-.+++-+|
T Consensus 249 K~~~L~~la~~lgi~~~qtIaVGDg~NDl~m~~~AGlgiA~-----nAkp~Vk~~Ad~~i~~~~l~~~l~~~ 315 (322)
T PRK11133 249 KADTLTRLAQEYEIPLAQTVAIGDGANDLPMIKAAGLGIAY-----HAKPKVNEQAQVTIRHADLMGVLCIL 315 (322)
T ss_pred HHHHHHHHHHHcCCChhhEEEEECCHHHHHHHHHCCCeEEe-----CCCHHHHhhCCEEecCcCHHHHHHHh
Confidence 99999999999999999999999999999999999998765 23444556889999855544455444
No 53
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=99.90 E-value=1.1e-23 Score=153.67 Aligned_cols=164 Identities=17% Similarity=0.157 Sum_probs=115.0
Q ss_pred eEEEeCCCccccChhhHHHHHHHHHHHhcCCCCCCCch----HHHHHHhcC--CCHHH----HHHHhCCC-CchhhhhhH
Q 025896 24 AVLFDVDGTLCDSDPLHHYAFREMLQEIGFNDGVPITE----DFFVENIAG--KHNID----IAKILFPD-DLPRGLKFC 92 (246)
Q Consensus 24 ~iifD~DGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~--~~~~~----~~~~~~~~-~~~~~~~~~ 92 (246)
+|+||+||||+|+...+..++..+++..+.. ...+.. ..+.....| ..... .+..+... +......
T Consensus 1 ~viFD~DGTL~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-- 77 (175)
T TIGR01493 1 AMVFDVYGTLVDVHGGVRACLAAIAPEGGAF-SDLWRAKQQEYSWRRSLMGDRRAFPEDTVRALRYIADRLGLDAEPK-- 77 (175)
T ss_pred CeEEecCCcCcccHHHHHHHHHHhhhhhhHH-HHHHHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHcCCCCCHH--
Confidence 5899999999999988888888777665210 000011 111111222 11111 12222111 1110011
Q ss_pred HHHHHHHHHHhhccCCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHH
Q 025896 93 EDKEAMFRKLASEQLKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFK 172 (246)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~ 172 (246)
....+.... ....++||+.++|+ +++|+||++...+...++++++..+|+.++++++.+..||+|+.|+.
T Consensus 78 --~~~~~~~~~-~~~~~~~g~~~~L~-------~~~i~Tn~~~~~~~~~l~~~~l~~~fd~v~~~~~~~~~KP~p~~f~~ 147 (175)
T TIGR01493 78 --YGERLRDAY-KNLPPWPDSAAALA-------RVAILSNASHWAFDQFAQQAGLPWYFDRAFSVDTVRAYKPDPVVYEL 147 (175)
T ss_pred --HHHHHHHHH-hcCCCCCchHHHHH-------HHhhhhCCCHHHHHHHHHHCCCHHHHhhhccHhhcCCCCCCHHHHHH
Confidence 112222222 25779999999998 37899999999999999999999999999999988999999999999
Q ss_pred HHHHcCCCCCcEEEEecChhhhHHHHhc
Q 025896 173 ALEMLKVSKDHTFVFEDSVSGIKAGVAA 200 (246)
Q Consensus 173 ~~~~~~~~~~~~~~igD~~~Di~~a~~~ 200 (246)
+++++|++|++|+||||+..|+.+|+++
T Consensus 148 ~~~~~~~~p~~~l~vgD~~~Di~~A~~~ 175 (175)
T TIGR01493 148 VFDTVGLPPDRVLMVAAHQWDLIGARKF 175 (175)
T ss_pred HHHHHCCCHHHeEeEecChhhHHHHhcC
Confidence 9999999999999999999999999864
No 54
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=99.89 E-value=4.1e-22 Score=150.33 Aligned_cols=196 Identities=12% Similarity=0.129 Sum_probs=127.5
Q ss_pred ceEEEeCCCccccChhhHHHHHHHHHHHhcCCCCCCCchHHHH-HHhcCC-CHHHHHHHhCCC-CchhhhhhHHHHHHHH
Q 025896 23 EAVLFDVDGTLCDSDPLHHYAFREMLQEIGFNDGVPITEDFFV-ENIAGK-HNIDIAKILFPD-DLPRGLKFCEDKEAMF 99 (246)
Q Consensus 23 k~iifD~DGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 99 (246)
++|+|||||||++++... .+++.++ . ....... ....|. ...+.+...+.. ..... +.+
T Consensus 4 ~~vifDfDgTi~~~d~~~-----~~~~~~~----~-~~~~~i~~~~~~g~~~~~~~~~~~~~~l~~~~~--------~~~ 65 (219)
T PRK09552 4 IQIFCDFDGTITNNDNII-----AIMKKFA----P-PEWEELKDDILSQELSIQEGVGQMFQLLPSNLK--------EEI 65 (219)
T ss_pred cEEEEcCCCCCCcchhhH-----HHHHHhC----H-HHHHHHHHHHHhCCcCHHHHHHHHHHhCCCCch--------HHH
Confidence 489999999999988653 2344442 1 1122222 222232 233444444333 11111 111
Q ss_pred HHHhhccCCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCC--cc--eEEEecCCCCCCCCChHH------
Q 025896 100 RKLASEQLKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSD--FF--QVVILGDECERAKPFPDP------ 169 (246)
Q Consensus 100 ~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~--~f--~~~~~~~~~~~~kp~~~~------ 169 (246)
.+.......++||+.++|+.|+++|++++|+|++....++..++++ +.. ++ +..+.++.....||+|..
T Consensus 66 ~~~~~~~~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~-~~~~~i~~n~~~~~~~~~~~~kp~p~~~~~~~~ 144 (219)
T PRK09552 66 IQFLLETAEIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGL-IPKEQIYCNGSDFSGEYITITWPHPCDEHCQNH 144 (219)
T ss_pred HHHHHhCCCcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHh-CCcCcEEEeEEEecCCeeEEeccCCcccccccc
Confidence 1222245789999999999999999999999999999999999987 643 33 444555555666776653
Q ss_pred ----HHHHHHHcCCCCCcEEEEecChhhhHHHHhcCCCEEEEcCCCChhhhhccCCcEEecCCCChhhHHHHhhhh
Q 025896 170 ----YFKALEMLKVSKDHTFVFEDSVSGIKAGVAAGLPVVGLTTRNPEHVLLEANPTFLIKDYDDPKLWSALEELD 241 (246)
Q Consensus 170 ----~~~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i~~~~el~~~~~l~~~~ 241 (246)
...++++++..++++++|||+.+|+.+|+.+|+.++ .............+.+.++++.| +...++.+.
T Consensus 145 ~~~~K~~~l~~~~~~~~~~i~iGDs~~Di~aa~~Ag~~~a--~~~l~~~~~~~~~~~~~~~~f~e--i~~~l~~~~ 216 (219)
T PRK09552 145 CGCCKPSLIRKLSDTNDFHIVIGDSITDLEAAKQADKVFA--RDFLITKCEELGIPYTPFETFHD--VQTELKHLL 216 (219)
T ss_pred CCCchHHHHHHhccCCCCEEEEeCCHHHHHHHHHCCccee--HHHHHHHHHHcCCCccccCCHHH--HHHHHHHHh
Confidence 357889999999999999999999999999999433 21111111123457788899999 655565543
No 55
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=99.88 E-value=1.7e-22 Score=142.71 Aligned_cols=103 Identities=24% Similarity=0.306 Sum_probs=86.8
Q ss_pred CCCcccHHHHHHHHHHcCCeEEEEeCCCH---------------HHHHHHHHhcCCCCcceEEEe----cCCCCCCCCCh
Q 025896 107 LKPISGLDKVKKWIEDRGLKRAAVTNAPR---------------ENAELMISKLGLSDFFQVVIL----GDECERAKPFP 167 (246)
Q Consensus 107 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~---------------~~~~~~l~~~~l~~~f~~~~~----~~~~~~~kp~~ 167 (246)
.+++||+.++|+.|+++|++++|+||.+. ..+...++++++... ..++. ++..+..||+|
T Consensus 26 ~~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~~~~~~~~~~KP~~ 104 (147)
T TIGR01656 26 WQLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQLGVAVD-GVLFCPHHPADNCSCRKPKP 104 (147)
T ss_pred eEEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhCCCcee-EEEECCCCCCCCCCCCCCCH
Confidence 56899999999999999999999999873 456677888888621 11221 34456679999
Q ss_pred HHHHHHHHHcCCCCCcEEEEecChhhhHHHHhcCCCEEEEcCC
Q 025896 168 DPYFKALEMLKVSKDHTFVFEDSVSGIKAGVAAGLPVVGLTTR 210 (246)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~ 210 (246)
++++.+++++++++++|++|||+..|+++|+++|+.++++.+|
T Consensus 105 ~~~~~~~~~~~~~~~e~i~IGDs~~Di~~A~~~Gi~~v~i~~~ 147 (147)
T TIGR01656 105 GLILEALKRLGVDASRSLVVGDRLRDLQAARNAGLAAVLLVDG 147 (147)
T ss_pred HHHHHHHHHcCCChHHEEEEcCCHHHHHHHHHCCCCEEEecCC
Confidence 9999999999999999999999999999999999999999764
No 56
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=99.88 E-value=3.4e-21 Score=144.68 Aligned_cols=148 Identities=16% Similarity=0.117 Sum_probs=110.5
Q ss_pred eEEEeCCCccccChhhHHHHHHHHHHHhcCCCCCCCchHHHHHHhcCCCHHHHHHHhCCCCchhhhhhHHHHHHHHHHHh
Q 025896 24 AVLFDVDGTLCDSDPLHHYAFREMLQEIGFNDGVPITEDFFVENIAGKHNIDIAKILFPDDLPRGLKFCEDKEAMFRKLA 103 (246)
Q Consensus 24 ~iifD~DGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (246)
+|+||+||||+|+.... .+|.+ ..+...+ ..+.|....+.+. ...
T Consensus 65 aViFDlDgTLlDSs~~~---------~~G~~---~~s~~~~-~~l~g~~~w~~~~----------------------~~~ 109 (237)
T TIGR01672 65 AVSFDIDDTVLFSSPGF---------WRGKK---TFSPGSE-DYLKNQVFWEKVN----------------------NGW 109 (237)
T ss_pred EEEEeCCCccccCcHHH---------hCCcc---cCCHHHh-hhhcChHHHHHHH----------------------Hhc
Confidence 99999999999998765 15332 1233322 2333332222221 112
Q ss_pred hccCCCcccHHHHHHHHHHcCCeEEEEeCC----CHHHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHcCC
Q 025896 104 SEQLKPISGLDKVKKWIEDRGLKRAAVTNA----PRENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEMLKV 179 (246)
Q Consensus 104 ~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~----~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~ 179 (246)
.....+++++.++|++++++|++++++||. ........++++|+.++|+.+++++.....||++. .+++++++
T Consensus 110 ~~~s~p~~~a~elL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll~~lGi~~~f~~i~~~d~~~~~Kp~~~---~~l~~~~i 186 (237)
T TIGR01672 110 DEFSIPKEVARQLIDMHQRRGDAIFFVTGRTPGKTDTVSKTLAKNFHIPAMNPVIFAGDKPGQYQYTKT---QWIQDKNI 186 (237)
T ss_pred ccCCcchhHHHHHHHHHHHCCCEEEEEeCCCCCcCHHHHHHHHHHhCCchheeEEECCCCCCCCCCCHH---HHHHhCCC
Confidence 234677788999999999999999999998 55678888889999999999988887766677654 45667666
Q ss_pred CCCcEEEEecChhhhHHHHhcCCCEEEEcCCCCh
Q 025896 180 SKDHTFVFEDSVSGIKAGVAAGLPVVGLTTRNPE 213 (246)
Q Consensus 180 ~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~ 213 (246)
++||||+.+|+.+|+++|+.++.+.++.+.
T Consensus 187 ----~i~vGDs~~DI~aAk~AGi~~I~V~~g~~s 216 (237)
T TIGR01672 187 ----RIHYGDSDNDITAAKEAGARGIRILRASNS 216 (237)
T ss_pred ----eEEEeCCHHHHHHHHHCCCCEEEEEecCCC
Confidence 799999999999999999999999988543
No 57
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=99.88 E-value=1e-22 Score=145.67 Aligned_cols=111 Identities=14% Similarity=0.107 Sum_probs=98.1
Q ss_pred ccCCCcccHHHHHHHHHHcCCeEEEEeCC-CHHHHHHHHHhcCCC---------CcceEEEecCCCCCCCCChHHHHHHH
Q 025896 105 EQLKPISGLDKVKKWIEDRGLKRAAVTNA-PRENAELMISKLGLS---------DFFQVVILGDECERAKPFPDPYFKAL 174 (246)
Q Consensus 105 ~~~~~~~~~~~~l~~l~~~g~~i~i~s~~-~~~~~~~~l~~~~l~---------~~f~~~~~~~~~~~~kp~~~~~~~~~ 174 (246)
....++||+.++|+.|+++|++++|+||+ ....++..+..+++. ++|+.+++++.....||.+..++.+.
T Consensus 42 ~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~~~~l~~~~~~~~~~~~Fd~iv~~~~~~~~kp~~~i~~~~~ 121 (174)
T TIGR01685 42 TEVTLIKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILGTFEITYAGKTVPMHSLFDDRIEIYKPNKAKQLEMILQKVN 121 (174)
T ss_pred CEEEEcccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHhCCcCCCCCcccHHHhceeeeeccCCchHHHHHHHHHHhh
Confidence 35789999999999999999999999998 888889999999998 99999999987666677777777777
Q ss_pred HHc--CCCCCcEEEEecChhhhHHHHhcCCCEEEEcCCCChhh
Q 025896 175 EML--KVSKDHTFVFEDSVSGIKAGVAAGLPVVGLTTRNPEHV 215 (246)
Q Consensus 175 ~~~--~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~ 215 (246)
+.+ +++|++|+||||+..|+.+|+++|+.++++.++....+
T Consensus 122 ~~~~~gl~p~e~l~VgDs~~di~aA~~aGi~~i~v~~g~~~~~ 164 (174)
T TIGR01685 122 KVDPSVLKPAQILFFDDRTDNVREVWGYGVTSCYCPSGMDKGT 164 (174)
T ss_pred hcccCCCCHHHeEEEcChhHhHHHHHHhCCEEEEcCCCccHHH
Confidence 777 89999999999999999999999999999988754433
No 58
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=99.88 E-value=2.5e-21 Score=144.91 Aligned_cols=130 Identities=20% Similarity=0.304 Sum_probs=97.6
Q ss_pred ccCCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCC----CCCCCCChHHHHHHHHHcCCC
Q 025896 105 EQLKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDE----CERAKPFPDPYFKALEMLKVS 180 (246)
Q Consensus 105 ~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~----~~~~kp~~~~~~~~~~~~~~~ 180 (246)
...+++||+.++|+.|+++ ++++|+|++....++..++++|+..+|...+..++ .+..+++|.....+++.++..
T Consensus 65 ~~~~~~pg~~e~L~~L~~~-~~~~IvS~~~~~~~~~~l~~~gl~~~f~~~~~~~~~~~i~~~~~~~p~~k~~~l~~~~~~ 143 (205)
T PRK13582 65 ATLDPLPGAVEFLDWLRER-FQVVILSDTFYEFAGPLMRQLGWPTLFCHSLEVDEDGMITGYDLRQPDGKRQAVKALKSL 143 (205)
T ss_pred HhCCCCCCHHHHHHHHHhc-CCEEEEeCCcHHHHHHHHHHcCCchhhcceEEECCCCeEECccccccchHHHHHHHHHHh
Confidence 3578899999999999999 99999999999999999999999888865443321 122234455566777777777
Q ss_pred CCcEEEEecChhhhHHHHhcCCCEEEEcCCCChhhhhccCCcE-EecCCCChhhHHHHhhhh
Q 025896 181 KDHTFVFEDSVSGIKAGVAAGLPVVGLTTRNPEHVLLEANPTF-LIKDYDDPKLWSALEELD 241 (246)
Q Consensus 181 ~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~-~i~~~~el~~~~~l~~~~ 241 (246)
++++++|||+.+|+.+++.+|+.+. +.. ........+++ +++++.+ ++.+++...
T Consensus 144 ~~~~v~iGDs~~D~~~~~aa~~~v~-~~~---~~~~~~~~~~~~~~~~~~e--l~~~l~~~~ 199 (205)
T PRK13582 144 GYRVIAAGDSYNDTTMLGEADAGIL-FRP---PANVIAEFPQFPAVHTYDE--LLAAIDKAS 199 (205)
T ss_pred CCeEEEEeCCHHHHHHHHhCCCCEE-ECC---CHHHHHhCCcccccCCHHH--HHHHHHHHH
Confidence 8999999999999999999998654 322 12222234555 8999998 666666544
No 59
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=99.87 E-value=2.7e-21 Score=134.47 Aligned_cols=98 Identities=18% Similarity=0.297 Sum_probs=87.2
Q ss_pred CCCcccHHHHHHHHHHcCCeEEEEeCCC--------HHHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHc-
Q 025896 107 LKPISGLDKVKKWIEDRGLKRAAVTNAP--------RENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEML- 177 (246)
Q Consensus 107 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~--------~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~- 177 (246)
..++|++.++|++|++.|++++++||.. ...++..++++++. ++..+.+. ...||+++.|+.+++++
T Consensus 24 ~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~--~~~KP~~~~~~~~~~~~~ 99 (132)
T TIGR01662 24 RILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVP--IDVLYACP--HCRKPKPGMFLEALKRFN 99 (132)
T ss_pred heeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCC--EEEEEECC--CCCCCChHHHHHHHHHcC
Confidence 5688999999999999999999999998 77889999999986 44444444 57799999999999999
Q ss_pred CCCCCcEEEEec-ChhhhHHHHhcCCCEEEEc
Q 025896 178 KVSKDHTFVFED-SVSGIKAGVAAGLPVVGLT 208 (246)
Q Consensus 178 ~~~~~~~~~igD-~~~Di~~a~~~G~~~i~v~ 208 (246)
+++|++++|||| +.+|+.+|+.+|+.+|+++
T Consensus 100 ~~~~~~~v~IGD~~~~Di~~A~~~Gi~~i~~~ 131 (132)
T TIGR01662 100 EIDPEESVYVGDQDLTDLQAAKRAGLAFILVA 131 (132)
T ss_pred CCChhheEEEcCCCcccHHHHHHCCCeEEEee
Confidence 599999999999 6899999999999999984
No 60
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=99.87 E-value=2e-21 Score=138.38 Aligned_cols=103 Identities=18% Similarity=0.230 Sum_probs=92.1
Q ss_pred cCCCcccHHHHHHHHHHcCCeEEEEeCCC---------------HHHHHHHHHhcCCCCcceEEE-e----cCCCCCCCC
Q 025896 106 QLKPISGLDKVKKWIEDRGLKRAAVTNAP---------------RENAELMISKLGLSDFFQVVI-L----GDECERAKP 165 (246)
Q Consensus 106 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~---------------~~~~~~~l~~~~l~~~f~~~~-~----~~~~~~~kp 165 (246)
.++++||+.++|++|+++|++++|+||.+ ...+...++.+|+. |+.++ + +++....||
T Consensus 27 ~~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~gl~--fd~ii~~~~~~~~~~~~~KP 104 (161)
T TIGR01261 27 KLRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQGII--FDDVLICPHFPDDNCDCRKP 104 (161)
T ss_pred HeeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHCCCc--eeEEEECCCCCCCCCCCCCC
Confidence 47889999999999999999999999963 45677888999997 77665 4 467788999
Q ss_pred ChHHHHHHHHHcCCCCCcEEEEecChhhhHHHHhcCCCEEEEcCC
Q 025896 166 FPDPYFKALEMLKVSKDHTFVFEDSVSGIKAGVAAGLPVVGLTTR 210 (246)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~ 210 (246)
++..+..+++++++++++++||||+.+|+.+|+++|++++++.++
T Consensus 105 ~~~~~~~~~~~~~~~~~e~l~IGD~~~Di~~A~~aGi~~i~~~~~ 149 (161)
T TIGR01261 105 KIKLLEPYLKKNLIDKARSYVIGDRETDMQLAENLGIRGIQYDEE 149 (161)
T ss_pred CHHHHHHHHHHcCCCHHHeEEEeCCHHHHHHHHHCCCeEEEEChh
Confidence 999999999999999999999999999999999999999999766
No 61
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=99.85 E-value=1.7e-20 Score=134.03 Aligned_cols=196 Identities=19% Similarity=0.227 Sum_probs=134.5
Q ss_pred CCcceEEEeCCCccccChhhHHHHHHHH-----HHHhcCCCCCCCchHHHHHHhcCCCHHHHHHHhCCC-CchhhhhhHH
Q 025896 20 APLEAVLFDVDGTLCDSDPLHHYAFREM-----LQEIGFNDGVPITEDFFVENIAGKHNIDIAKILFPD-DLPRGLKFCE 93 (246)
Q Consensus 20 ~~~k~iifD~DGTL~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 93 (246)
+++++++||+|.||+.....+..+.++- .+++|+. -+.........-+.+...+..+... ......++.
T Consensus 13 ~~~~~l~FDiDdtLYp~St~i~~~~~~nI~~f~~eklgi~----~e~a~~L~~~~yk~YG~t~aGL~~~~~~~d~deY~- 87 (244)
T KOG3109|consen 13 PNYKCLFFDIDDTLYPLSTGIQLMMRNNIQEFFVEKLGIS----EEEAEELRESLYKEYGLTMAGLKAVGYIFDADEYH- 87 (244)
T ss_pred ccceEEEEecccccccCchhHHHHHHHHHHHHHHHHhCCC----hhhhHHHHHHHHHHHhHHHHHHHHhcccCCHHHHH-
Confidence 3789999999999999887776666533 3445443 2211111110001111111222111 111122222
Q ss_pred HHHHHHHHHh-hccCCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCC------CCCCC
Q 025896 94 DKEAMFRKLA-SEQLKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDECE------RAKPF 166 (246)
Q Consensus 94 ~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~------~~kp~ 166 (246)
.+..... .+.++|.+-.+.+|-.|+..+ .++.||++...+.+.|.++|+.++|+++++.+... ..||.
T Consensus 88 ---~~V~~~LPlq~LkPD~~LRnlLL~l~~r~--k~~FTNa~k~HA~r~Lk~LGieDcFegii~~e~~np~~~~~vcKP~ 162 (244)
T KOG3109|consen 88 ---RFVHGRLPLQDLKPDPVLRNLLLSLKKRR--KWIFTNAYKVHAIRILKKLGIEDCFEGIICFETLNPIEKTVVCKPS 162 (244)
T ss_pred ---HHhhccCcHhhcCCCHHHHHHHHhCcccc--EEEecCCcHHHHHHHHHHhChHHhccceeEeeccCCCCCceeecCC
Confidence 2222211 134788888999999999864 89999999999999999999999999999876554 47999
Q ss_pred hHHHHHHHHHcCCC-CCcEEEEecChhhhHHHHhcCCCEEEEcCCCChhhhhccCCcEEecCCCC
Q 025896 167 PDPYFKALEMLKVS-KDHTFVFEDSVSGIKAGVAAGLPVVGLTTRNPEHVLLEANPTFLIKDYDD 230 (246)
Q Consensus 167 ~~~~~~~~~~~~~~-~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i~~~~e 230 (246)
+.+|+.+.+..|+. |++++||+||.++|+.|++.|++++++...... ..+++++.+...
T Consensus 163 ~~afE~a~k~agi~~p~~t~FfDDS~~NI~~ak~vGl~tvlv~~~~~~-----~~~d~~l~~ih~ 222 (244)
T KOG3109|consen 163 EEAFEKAMKVAGIDSPRNTYFFDDSERNIQTAKEVGLKTVLVGREHKI-----KGVDYALEQIHN 222 (244)
T ss_pred HHHHHHHHHHhCCCCcCceEEEcCchhhHHHHHhccceeEEEEeeecc-----cchHHHHHHhhc
Confidence 99999999999998 999999999999999999999999999665422 244555555444
No 62
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=99.84 E-value=7.9e-20 Score=131.07 Aligned_cols=97 Identities=19% Similarity=0.182 Sum_probs=84.3
Q ss_pred CcccHHHHHHHHHHcCCeEEEEeCCCHH------------HHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHH
Q 025896 109 PISGLDKVKKWIEDRGLKRAAVTNAPRE------------NAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEM 176 (246)
Q Consensus 109 ~~~~~~~~l~~l~~~g~~i~i~s~~~~~------------~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~ 176 (246)
++||+.++|++|++.|++++|+||.+.. .+...++++|+. ++.+++++.....||+|..+..++++
T Consensus 43 ~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~gl~--~~~ii~~~~~~~~KP~p~~~~~~~~~ 120 (166)
T TIGR01664 43 LYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKLKVP--IQVLAATHAGLYRKPMTGMWEYLQSQ 120 (166)
T ss_pred ecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHHcCCC--EEEEEecCCCCCCCCccHHHHHHHHH
Confidence 6899999999999999999999998653 467788999985 35666666666789999999999999
Q ss_pred cC--CCCCcEEEEecCh--------hhhHHHHhcCCCEEEE
Q 025896 177 LK--VSKDHTFVFEDSV--------SGIKAGVAAGLPVVGL 207 (246)
Q Consensus 177 ~~--~~~~~~~~igD~~--------~Di~~a~~~G~~~i~v 207 (246)
++ +++++++||||+. +|+++|+++|+.+++-
T Consensus 121 ~~~~~~~~~~v~VGD~~~~~~~~~~~Di~aA~~aGi~~~~~ 161 (166)
T TIGR01664 121 YNSPIKMTRSFYVGDAAGRKLDFSDADIKFAKNLGLEFKYP 161 (166)
T ss_pred cCCCCCchhcEEEECCCCCCCCCchhHHHHHHHCCCCcCCh
Confidence 99 9999999999996 6999999999988653
No 63
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=99.83 E-value=1.5e-19 Score=135.83 Aligned_cols=130 Identities=14% Similarity=0.091 Sum_probs=94.6
Q ss_pred cCCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcc---eEEEecCCCCCCCCChHHH----------HH
Q 025896 106 QLKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFF---QVVILGDECERAKPFPDPY----------FK 172 (246)
Q Consensus 106 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f---~~~~~~~~~~~~kp~~~~~----------~~ 172 (246)
..+++||+.++|+.|+++|++++|+|++....++.+++.++....+ +..+.++.....+|++..+ ..
T Consensus 68 ~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~~~~~i~~n~~~~~~~~~~~~~p~~~~~~~~~~cg~~K~~ 147 (214)
T TIGR03333 68 TAEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGIVEKDRIYCNEADFSNEYIHIDWPHPCDGTCQNQCGCCKPS 147 (214)
T ss_pred cCcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhhCCcccEEeceeEeeCCeeEEeCCCCCccccccCCCCCHHH
Confidence 4789999999999999999999999999999999999887544333 3444444445566766543 46
Q ss_pred HHHHcCCCCCcEEEEecChhhhHHHHhcCCCEEEEcCCCChhhhhccCCcEEecCCCChhhHHHHhh
Q 025896 173 ALEMLKVSKDHTFVFEDSVSGIKAGVAAGLPVVGLTTRNPEHVLLEANPTFLIKDYDDPKLWSALEE 239 (246)
Q Consensus 173 ~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i~~~~el~~~~~l~~ 239 (246)
++++++..++++++|||+.+|+.+|+.+|+ +++.............+...++++.| +...|++
T Consensus 148 ~l~~~~~~~~~~i~iGDg~~D~~~a~~Ad~--~~ar~~l~~~~~~~~~~~~~~~~f~d--i~~~l~~ 210 (214)
T TIGR03333 148 LIRKLSEPNDYHIVIGDSVTDVEAAKQSDL--CFARDYLLNECEELGLNHAPFQDFYD--VRKELEN 210 (214)
T ss_pred HHHHHhhcCCcEEEEeCCHHHHHHHHhCCe--eEehHHHHHHHHHcCCCccCcCCHHH--HHHHHHH
Confidence 777777788999999999999999999997 44433211111222346666788888 5555544
No 64
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=99.82 E-value=1.3e-19 Score=128.78 Aligned_cols=113 Identities=16% Similarity=0.149 Sum_probs=95.3
Q ss_pred HHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEEEecChhhhH
Q 025896 116 VKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEMLKVSKDHTFVFEDSVSGIK 195 (246)
Q Consensus 116 ~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~igD~~~Di~ 195 (246)
.+++|+++|++++|+||.+.......++++|+..+|+. .+|+++.+..+++++++++++|+||||+.+|+.
T Consensus 36 ~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~gi~~~~~~---------~~~k~~~~~~~~~~~~~~~~~~~~vGDs~~D~~ 106 (154)
T TIGR01670 36 GIRCALKSGIEVAIITGRKAKLVEDRCKTLGITHLYQG---------QSNKLIAFSDILEKLALAPENVAYIGDDLIDWP 106 (154)
T ss_pred HHHHHHHCCCEEEEEECCCCHHHHHHHHHcCCCEEEec---------ccchHHHHHHHHHHcCCCHHHEEEECCCHHHHH
Confidence 79999999999999999999999999999999877763 268899999999999999999999999999999
Q ss_pred HHHhcCCCEEEEcCCCChhhhhccCCcEEecCCCChh-hHHHHhhhh
Q 025896 196 AGVAAGLPVVGLTTRNPEHVLLEANPTFLIKDYDDPK-LWSALEELD 241 (246)
Q Consensus 196 ~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i~~~~el~-~~~~l~~~~ 241 (246)
+++.+|++ +.+.... +.....+++++.+..+-+ +..+++.+.
T Consensus 107 ~~~~ag~~-~~v~~~~---~~~~~~a~~i~~~~~~~g~~~~~~~~~~ 149 (154)
T TIGR01670 107 VMEKVGLS-VAVADAH---PLLIPRADYVTRIAGGRGAVREVCELLL 149 (154)
T ss_pred HHHHCCCe-EecCCcC---HHHHHhCCEEecCCCCCcHHHHHHHHHH
Confidence 99999997 5554433 234567899999887655 777766654
No 65
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=99.82 E-value=1.3e-19 Score=129.57 Aligned_cols=105 Identities=14% Similarity=0.147 Sum_probs=90.4
Q ss_pred HHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEEEecChhhh
Q 025896 115 KVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEMLKVSKDHTFVFEDSVSGI 194 (246)
Q Consensus 115 ~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~igD~~~Di 194 (246)
.-++.|++.|++++|+|+.....++..++++++..+|+. .||+|..++.++++++++++++++|||+.||+
T Consensus 41 ~~~~~L~~~Gi~laIiT~k~~~~~~~~l~~lgi~~~f~~---------~kpkp~~~~~~~~~l~~~~~ev~~iGD~~nDi 111 (169)
T TIGR02726 41 MGVIVLQLCGIDVAIITSKKSGAVRHRAEELKIKRFHEG---------IKKKTEPYAQMLEEMNISDAEVCYVGDDLVDL 111 (169)
T ss_pred HHHHHHHHCCCEEEEEECCCcHHHHHHHHHCCCcEEEec---------CCCCHHHHHHHHHHcCcCHHHEEEECCCHHHH
Confidence 456778899999999999999999999999999988873 27899999999999999999999999999999
Q ss_pred HHHHhcCCCEEEEcCCCChhhhhccCCcEEecCCCChh
Q 025896 195 KAGVAAGLPVVGLTTRNPEHVLLEANPTFLIKDYDDPK 232 (246)
Q Consensus 195 ~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i~~~~el~ 232 (246)
.+++.+|+++++. ++.+.....+++++.+..+-+
T Consensus 112 ~~~~~ag~~~am~----nA~~~lk~~A~~I~~~~~~~g 145 (169)
T TIGR02726 112 SMMKRVGLAVAVG----DAVADVKEAAAYVTTARGGHG 145 (169)
T ss_pred HHHHHCCCeEECc----CchHHHHHhCCEEcCCCCCCC
Confidence 9999999987777 444455567888887666544
No 66
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=99.82 E-value=1.7e-19 Score=126.25 Aligned_cols=103 Identities=31% Similarity=0.481 Sum_probs=93.8
Q ss_pred ccCCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCCCC----------------CCChH
Q 025896 105 EQLKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDECERA----------------KPFPD 168 (246)
Q Consensus 105 ~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~----------------kp~~~ 168 (246)
....+++++.++|++|+++|++++++|++....++..++++++..+++.++.+...... ||++.
T Consensus 21 ~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (139)
T cd01427 21 EELELYPGVKEALKELKEKGIKLALATNKSRREVLELLEELGLDDYFDPVITSNGAAIYYPKEGLFLGGGPFDIGKPNPD 100 (139)
T ss_pred ccCCcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHcCCchhhhheeccchhhhhcccccccccccccccCCCCHH
Confidence 45889999999999999999999999999999999999999998888888877655444 99999
Q ss_pred HHHHHHHHcCCCCCcEEEEecChhhhHHHHhcCCCEEEE
Q 025896 169 PYFKALEMLKVSKDHTFVFEDSVSGIKAGVAAGLPVVGL 207 (246)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v 207 (246)
.+..++++++..++++++|||+.+|+.+++.+|+.++++
T Consensus 101 ~~~~~~~~~~~~~~~~~~igD~~~d~~~~~~~g~~~i~v 139 (139)
T cd01427 101 KLLAALKLLGVDPEEVLMVGDSLNDIEMAKAAGGLGVAV 139 (139)
T ss_pred HHHHHHHHcCCChhhEEEeCCCHHHHHHHHHcCCceeeC
Confidence 999999999999999999999999999999999998864
No 67
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=99.82 E-value=4.6e-19 Score=130.88 Aligned_cols=95 Identities=13% Similarity=0.158 Sum_probs=80.1
Q ss_pred cCCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCC--------------------CCCCCC
Q 025896 106 QLKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDE--------------------CERAKP 165 (246)
Q Consensus 106 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~--------------------~~~~kp 165 (246)
..+++||+.++|+.|++.|++++|+|++....++..++++++.++|+.+++++. ...+.+
T Consensus 70 ~~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~ 149 (188)
T TIGR01489 70 SAPIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGIGEKDVFIEIYSNPASFDNDGRHIVWPHHCHGCCSCPCGCC 149 (188)
T ss_pred hCCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHcCChhheeEEeccCceECCCCcEEEecCCCCccCcCCCCCC
Confidence 378999999999999999999999999999999999999999999999886532 122334
Q ss_pred ChHHHHHHHHHcCCCCCcEEEEecChhhhHHHHhcCCC
Q 025896 166 FPDPYFKALEMLKVSKDHTFVFEDSVSGIKAGVAAGLP 203 (246)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~ 203 (246)
++..++++.+.+ +++++||||+.+|+++|+.+++-
T Consensus 150 K~~~~~~~~~~~---~~~~i~iGD~~~D~~aa~~~d~~ 184 (188)
T TIGR01489 150 KGKVIHKLSEPK---YQHIIYIGDGVTDVCPAKLSDVV 184 (188)
T ss_pred HHHHHHHHHhhc---CceEEEECCCcchhchHhcCCcc
Confidence 566777776654 89999999999999999999753
No 68
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=99.82 E-value=3.9e-19 Score=131.57 Aligned_cols=124 Identities=18% Similarity=0.257 Sum_probs=90.0
Q ss_pred cCCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEE--------EecCCCCCCCCChHHHHHHHHHc
Q 025896 106 QLKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVV--------ILGDECERAKPFPDPYFKALEML 177 (246)
Q Consensus 106 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~--------~~~~~~~~~kp~~~~~~~~~~~~ 177 (246)
.++++||+.++|+.+++.+ +++|+|++....+..+++++|+..+|... +++... ..++.+......+++.
T Consensus 66 ~i~l~pga~ell~~lk~~~-~~~IVS~~~~~~~~~il~~lgi~~~~an~l~~~~~g~~tG~~~-~~~~~K~~~l~~l~~~ 143 (203)
T TIGR02137 66 TLKPLEGAVEFVDWLRERF-QVVILSDTFYEFSQPLMRQLGFPTLLCHKLEIDDSDRVVGYQL-RQKDPKRQSVIAFKSL 143 (203)
T ss_pred hCCCCccHHHHHHHHHhCC-eEEEEeCChHHHHHHHHHHcCCchhhceeeEEecCCeeECeee-cCcchHHHHHHHHHhh
Confidence 4789999999999999985 99999999999999999999999888532 222211 2334443333344554
Q ss_pred CCCCCcEEEEecChhhhHHHHhcCCCEEEEcCCCChhhhhccCCcE-EecCCCChhhHHHHhhh
Q 025896 178 KVSKDHTFVFEDSVSGIKAGVAAGLPVVGLTTRNPEHVLLEANPTF-LIKDYDDPKLWSALEEL 240 (246)
Q Consensus 178 ~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~-~i~~~~el~~~~~l~~~ 240 (246)
+ .++++|||+.||+.|++.+|.++++.. .+......+++ ++.+.+| +...+.+.
T Consensus 144 ~---~~~v~vGDs~nDl~ml~~Ag~~ia~~a----k~~~~~~~~~~~~~~~~~~--~~~~~~~~ 198 (203)
T TIGR02137 144 Y---YRVIAAGDSYNDTTMLSEAHAGILFHA----PENVIREFPQFPAVHTYED--LKREFLKA 198 (203)
T ss_pred C---CCEEEEeCCHHHHHHHHhCCCCEEecC----CHHHHHhCCCCCcccCHHH--HHHHHHHH
Confidence 4 379999999999999999999988873 33333344555 6777777 55555543
No 69
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=99.79 E-value=3.7e-18 Score=126.90 Aligned_cols=101 Identities=17% Similarity=0.190 Sum_probs=86.2
Q ss_pred CCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCC-------CC---CCCCChHHHHHHHHH
Q 025896 107 LKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDE-------CE---RAKPFPDPYFKALEM 176 (246)
Q Consensus 107 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~-------~~---~~kp~~~~~~~~~~~ 176 (246)
.+++||+.++++.+++.|++++|+|++.....+.+.+++|++..+...+..++ .+ .+.-+...++.++++
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d~~~an~l~~~dG~ltG~v~g~~~~~~~K~~~l~~~~~~ 155 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLGIDYVVANELEIDDGKLTGRVVGPICDGEGKAKALRELAAE 155 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCchheeeEEEEeCCEEeceeeeeecCcchHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999887755554443 11 123356778899999
Q ss_pred cCCCCCcEEEEecChhhhHHHHhcCCCEEEE
Q 025896 177 LKVSKDHTFVFEDSVSGIKAGVAAGLPVVGL 207 (246)
Q Consensus 177 ~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v 207 (246)
+|+++++++++|||.||+.|.+.+|.+.+.-
T Consensus 156 ~g~~~~~~~a~gDs~nDlpml~~ag~~ia~n 186 (212)
T COG0560 156 LGIPLEETVAYGDSANDLPMLEAAGLPIAVN 186 (212)
T ss_pred cCCCHHHeEEEcCchhhHHHHHhCCCCeEeC
Confidence 9999999999999999999999999875544
No 70
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=99.79 E-value=7.9e-20 Score=140.65 Aligned_cols=123 Identities=11% Similarity=0.115 Sum_probs=100.4
Q ss_pred CcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCC---CCCCCChHHHHHHHHHcCCCCCcEE
Q 025896 109 PISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDEC---ERAKPFPDPYFKALEMLKVSKDHTF 185 (246)
Q Consensus 109 ~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~---~~~kp~~~~~~~~~~~~~~~~~~~~ 185 (246)
.++++.+.++.|++.+++++++||.+.......+..+|+..+|+.+..+... ..+||+|.+|+.++++++++|++++
T Consensus 121 ~y~~l~~a~~~L~~~~~~~~iatn~~~~~~~~~~~~~g~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~~~ 200 (257)
T TIGR01458 121 SYQILNQAFRLLLDGAKPLLIAIGKGRYYKRKDGLALDVGPFVTALEYATDTKATVVGKPSKTFFLEALRATGCEPEEAV 200 (257)
T ss_pred CHHHHHHHHHHHHcCCCCEEEEeCCCCCCcCCCCCCCCchHHHHHHHHHhCCCceeecCCCHHHHHHHHHHhCCChhhEE
Confidence 3677888899999988999999998877666666667777778766544332 2379999999999999999999999
Q ss_pred EEecCh-hhhHHHHhcCCCEEEEcCCC-Chh--hhhccCCcEEecCCCCh
Q 025896 186 VFEDSV-SGIKAGVAAGLPVVGLTTRN-PEH--VLLEANPTFLIKDYDDP 231 (246)
Q Consensus 186 ~igD~~-~Di~~a~~~G~~~i~v~~~~-~~~--~~~~~~~~~~i~~~~el 231 (246)
||||+. +|+.+|+.+|+.++++.+|. ... +.....|+++++++.|+
T Consensus 201 ~vGD~~~~Di~~a~~~G~~~i~v~~G~~~~~~~~~~~~~pd~~~~sl~el 250 (257)
T TIGR01458 201 MIGDDCRDDVGGAQDCGMRGIQVRTGKYRPSDEEKINVPPDLTCDSLPHA 250 (257)
T ss_pred EECCCcHHHHHHHHHcCCeEEEECCCCCChHHhcccCCCCCEEECCHHHH
Confidence 999997 99999999999999999884 322 23345799999999984
No 71
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=99.79 E-value=1.3e-19 Score=141.46 Aligned_cols=121 Identities=15% Similarity=0.141 Sum_probs=93.0
Q ss_pred CcccHHHHHHHHHHcCCeEEEEeCCCHHHHH-HHHHhcCCCCcceEEEe---cCCCCCCCCChHHHHHHHHHcCCCCCcE
Q 025896 109 PISGLDKVKKWIEDRGLKRAAVTNAPRENAE-LMISKLGLSDFFQVVIL---GDECERAKPFPDPYFKALEMLKVSKDHT 184 (246)
Q Consensus 109 ~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~-~~l~~~~l~~~f~~~~~---~~~~~~~kp~~~~~~~~~~~~~~~~~~~ 184 (246)
.++++.++++.|++.|. +.|+||.+..... ..+...+...+|+.+.. .+....+||+|..+..++++++++|+++
T Consensus 144 ~y~~i~~~l~~L~~~g~-~~i~Tn~d~~~~~~~~~~~~~~g~~~~~i~~~~g~~~~~~gKP~p~~~~~~~~~~~~~~~~~ 222 (279)
T TIGR01452 144 SYAKLREACAHLREPGC-LFVATNRDPWHPLSDGSRTPGTGSLVAAIETASGRQPLVVGKPSPYMFECITENFSIDPART 222 (279)
T ss_pred CHHHHHHHHHHHhcCCC-EEEEeCCCCCCCCcCCCcccChHHHHHHHHHHhCCceeccCCCCHHHHHHHHHHhCCChhhE
Confidence 37889999999998887 7889998754321 12223345455554432 3344578999999999999999999999
Q ss_pred EEEecCh-hhhHHHHhcCCCEEEEcCCCC-hhhhhc--------cCCcEEecCCCC
Q 025896 185 FVFEDSV-SGIKAGVAAGLPVVGLTTRNP-EHVLLE--------ANPTFLIKDYDD 230 (246)
Q Consensus 185 ~~igD~~-~Di~~a~~~G~~~i~v~~~~~-~~~~~~--------~~~~~~i~~~~e 230 (246)
+||||+. .|+.+|+++|+.+++|.+|.. ..+... ..|+++++++.|
T Consensus 223 lmIGD~~~tDI~~A~~aGi~si~V~~G~~~~~~l~~~~~~~~~~~~Pd~~~~~l~~ 278 (279)
T TIGR01452 223 LMVGDRLETDILFGHRCGMTTVLVLSGVSRLEEAQEYLAAGQHDLVPDYVVESLAD 278 (279)
T ss_pred EEECCChHHHHHHHHHcCCcEEEECCCCCCHHHHHhhhcccccCCCCCEEeccccc
Confidence 9999996 999999999999999999943 333321 469999999987
No 72
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=99.78 E-value=5.8e-18 Score=122.32 Aligned_cols=99 Identities=15% Similarity=0.161 Sum_probs=84.7
Q ss_pred CCCcccHHHHHHHHHHcCCeEEEEeCCC-HHHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHcCCCCCcEE
Q 025896 107 LKPISGLDKVKKWIEDRGLKRAAVTNAP-RENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEMLKVSKDHTF 185 (246)
Q Consensus 107 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~-~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~ 185 (246)
..++|++.++|++|++.|++++|+||.+ .......++.+++..++ ...||+|..|..+++++++++++++
T Consensus 42 ~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~~gl~~~~---------~~~KP~p~~~~~~l~~~~~~~~~~l 112 (170)
T TIGR01668 42 NEAYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEKALGIPVLP---------HAVKPPGCAFRRAHPEMGLTSEQVA 112 (170)
T ss_pred CCcChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHcCCEEEc---------CCCCCChHHHHHHHHHcCCCHHHEE
Confidence 4567889999999999999999999998 56666777777764221 3479999999999999999999999
Q ss_pred EEecCh-hhhHHHHhcCCCEEEEcCCCChh
Q 025896 186 VFEDSV-SGIKAGVAAGLPVVGLTTRNPEH 214 (246)
Q Consensus 186 ~igD~~-~Di~~a~~~G~~~i~v~~~~~~~ 214 (246)
+|||+. .|+.+|+++|+.++++.++....
T Consensus 113 ~IGDs~~~Di~aA~~aGi~~i~v~~g~~~~ 142 (170)
T TIGR01668 113 VVGDRLFTDVMGGNRNGSYTILVEPLVHPD 142 (170)
T ss_pred EECCcchHHHHHHHHcCCeEEEEccCcCCc
Confidence 999998 79999999999999998886443
No 73
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=99.77 E-value=1.5e-17 Score=124.10 Aligned_cols=101 Identities=12% Similarity=0.137 Sum_probs=83.6
Q ss_pred CCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceE-EEecCC----------CCCCCCChHHHHHHHH
Q 025896 107 LKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQV-VILGDE----------CERAKPFPDPYFKALE 175 (246)
Q Consensus 107 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~-~~~~~~----------~~~~kp~~~~~~~~~~ 175 (246)
..++|++.++++.++++|++++|+|++....++.+++++|+..+|.. +...++ ...++++...++.+++
T Consensus 86 ~~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg~~~~~~~~l~~~~~g~~~g~~~~~~~~g~~K~~~l~~~~~ 165 (202)
T TIGR01490 86 SILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLARILGIDNAIGTRLEESEDGIYTGNIDGNNCKGEGKVHALAELLA 165 (202)
T ss_pred HhccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCcceEecceEEcCCCEEeCCccCCCCCChHHHHHHHHHHH
Confidence 56899999999999999999999999999999999999999887754 222111 1223455667888899
Q ss_pred HcCCCCCcEEEEecChhhhHHHHhcCCCEEEE
Q 025896 176 MLKVSKDHTFVFEDSVSGIKAGVAAGLPVVGL 207 (246)
Q Consensus 176 ~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v 207 (246)
+.+++++++++|||+.+|+++++.+|.+++..
T Consensus 166 ~~~~~~~~~~~~gDs~~D~~~~~~a~~~~~v~ 197 (202)
T TIGR01490 166 EEQIDLKDSYAYGDSISDLPLLSLVGHPYVVN 197 (202)
T ss_pred HcCCCHHHcEeeeCCcccHHHHHhCCCcEEeC
Confidence 99999999999999999999999999876544
No 74
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=99.77 E-value=8.9e-18 Score=132.99 Aligned_cols=103 Identities=18% Similarity=0.261 Sum_probs=89.0
Q ss_pred cCCCcccHHHHHHHHHHcCCeEEEEeCC---------------CHHHHHHHHHhcCCCCcceEEEec-----CCCCCCCC
Q 025896 106 QLKPISGLDKVKKWIEDRGLKRAAVTNA---------------PRENAELMISKLGLSDFFQVVILG-----DECERAKP 165 (246)
Q Consensus 106 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~---------------~~~~~~~~l~~~~l~~~f~~~~~~-----~~~~~~kp 165 (246)
...++||+.++|++|+++|++++|+||. ....+...++.+++. |+.++.+ ++....||
T Consensus 28 ~~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL~~~gl~--fd~i~i~~~~~sd~~~~rKP 105 (354)
T PRK05446 28 KLAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIFESQGIK--FDEVLICPHFPEDNCSCRKP 105 (354)
T ss_pred cceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHhhHHHHHHHHHHHcCCc--eeeEEEeCCcCcccCCCCCC
Confidence 4789999999999999999999999995 234566677888884 6666533 45578899
Q ss_pred ChHHHHHHHHHcCCCCCcEEEEecChhhhHHHHhcCCCEEEEcCC
Q 025896 166 FPDPYFKALEMLKVSKDHTFVFEDSVSGIKAGVAAGLPVVGLTTR 210 (246)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~ 210 (246)
+|.++..+++++++.+++++||||+.+|+.+|+.+|+++|+++..
T Consensus 106 ~p~~l~~a~~~l~v~~~~svmIGDs~sDi~aAk~aGi~~I~v~~~ 150 (354)
T PRK05446 106 KTGLVEEYLAEGAIDLANSYVIGDRETDVQLAENMGIKGIRYARE 150 (354)
T ss_pred CHHHHHHHHHHcCCCcccEEEEcCCHHHHHHHHHCCCeEEEEECC
Confidence 999999999999999999999999999999999999999999654
No 75
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=99.76 E-value=9.9e-18 Score=126.33 Aligned_cols=90 Identities=22% Similarity=0.327 Sum_probs=79.0
Q ss_pred CCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEE
Q 025896 107 LKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEMLKVSKDHTFV 186 (246)
Q Consensus 107 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~ 186 (246)
.+++|++.++|++|++.|++++++|+.+........+.+|+.+ ..+.+... +||++..+..+++.+++++++|+|
T Consensus 126 d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lgi~~---~~v~a~~~--~kP~~k~~~~~i~~l~~~~~~v~~ 200 (215)
T PF00702_consen 126 DPLRPGAKEALQELKEAGIKVAILTGDNESTASAIAKQLGIFD---SIVFARVI--GKPEPKIFLRIIKELQVKPGEVAM 200 (215)
T ss_dssp EEBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTSCS---EEEEESHE--TTTHHHHHHHHHHHHTCTGGGEEE
T ss_pred CcchhhhhhhhhhhhccCcceeeeecccccccccccccccccc---cccccccc--ccccchhHHHHHHHHhcCCCEEEE
Confidence 3678999999999999999999999999999999999999943 22222211 689988999999999999999999
Q ss_pred EecChhhhHHHHhcC
Q 025896 187 FEDSVSGIKAGVAAG 201 (246)
Q Consensus 187 igD~~~Di~~a~~~G 201 (246)
|||+.||+.|+++||
T Consensus 201 vGDg~nD~~al~~Ag 215 (215)
T PF00702_consen 201 VGDGVNDAPALKAAG 215 (215)
T ss_dssp EESSGGHHHHHHHSS
T ss_pred EccCHHHHHHHHhCc
Confidence 999999999999987
No 76
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=99.75 E-value=5.1e-17 Score=118.76 Aligned_cols=96 Identities=21% Similarity=0.244 Sum_probs=79.2
Q ss_pred ccCCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCC------------CCCCCCChHHHHH
Q 025896 105 EQLKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDE------------CERAKPFPDPYFK 172 (246)
Q Consensus 105 ~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~------------~~~~kp~~~~~~~ 172 (246)
..+.++||+.++++.++++|++++|+|++....++..++++|+..+|...+..++ ......++..++.
T Consensus 70 ~~~~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~l~~ 149 (177)
T TIGR01488 70 RQVALRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGIDDVFANRLEFDDNGLLTGPIEGQVNPEGECKGKVLKE 149 (177)
T ss_pred hcCCcCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCchheeeeEEECCCCEEeCccCCcccCCcchHHHHHHH
Confidence 4577899999999999999999999999999999999999999877755443321 1123345667888
Q ss_pred HHHHcCCCCCcEEEEecChhhhHHHHhc
Q 025896 173 ALEMLKVSKDHTFVFEDSVSGIKAGVAA 200 (246)
Q Consensus 173 ~~~~~~~~~~~~~~igD~~~Di~~a~~~ 200 (246)
++++++++++++++|||+.+|+++++.+
T Consensus 150 ~~~~~~~~~~~~~~iGDs~~D~~~~~~a 177 (177)
T TIGR01488 150 LLEESKITLKKIIAVGDSVNDLPMLKLA 177 (177)
T ss_pred HHHHhCCCHHHEEEEeCCHHHHHHHhcC
Confidence 8888899999999999999999998764
No 77
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=99.75 E-value=9.6e-18 Score=115.35 Aligned_cols=88 Identities=11% Similarity=0.120 Sum_probs=78.3
Q ss_pred CCcccHHHHHHHHHHcCCeEEEEeCC-CHHHHHHHHHhcC-------CCCcceEEEecCCCCCCCCChHHHHHHHHHcC-
Q 025896 108 KPISGLDKVKKWIEDRGLKRAAVTNA-PRENAELMISKLG-------LSDFFQVVILGDECERAKPFPDPYFKALEMLK- 178 (246)
Q Consensus 108 ~~~~~~~~~l~~l~~~g~~i~i~s~~-~~~~~~~~l~~~~-------l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~- 178 (246)
+++||+.++|++|+++|++++++||. ........++.++ +.++|+.+++++ .+|+|+.+..+++++|
T Consensus 29 ~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~~~~~~i~~l~~~f~~~~~~~----~~pkp~~~~~a~~~lg~ 104 (128)
T TIGR01681 29 VTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIFEDFGIIFPLAEYFDPLTIGY----WLPKSPRLVEIALKLNG 104 (128)
T ss_pred HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhccccccchhhHhhhhhhhhcC----CCcHHHHHHHHHHHhcC
Confidence 68899999999999999999999999 7888888888888 788888887665 3588999999999999
Q ss_pred -CCCCcEEEEecChhhhHHHHh
Q 025896 179 -VSKDHTFVFEDSVSGIKAGVA 199 (246)
Q Consensus 179 -~~~~~~~~igD~~~Di~~a~~ 199 (246)
+.|++|+||||+..|+...+.
T Consensus 105 ~~~p~~~l~igDs~~n~~~~~~ 126 (128)
T TIGR01681 105 VLKPKSILFVDDRPDNNEEVDY 126 (128)
T ss_pred CCCcceEEEECCCHhHHHHHHh
Confidence 999999999999999877654
No 78
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=99.74 E-value=1.8e-17 Score=121.15 Aligned_cols=101 Identities=17% Similarity=0.218 Sum_probs=84.3
Q ss_pred HHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEEEecChhhhH
Q 025896 116 VKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEMLKVSKDHTFVFEDSVSGIK 195 (246)
Q Consensus 116 ~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~igD~~~Di~ 195 (246)
.++.|+++|++++|+|+.....+...++.+|+..+|++ .++++..++.+++++|+++++++||||+.+|+.
T Consensus 56 ~i~~L~~~Gi~v~I~T~~~~~~v~~~l~~lgl~~~f~g---------~~~k~~~l~~~~~~~gl~~~ev~~VGDs~~D~~ 126 (183)
T PRK09484 56 GIRCLLTSGIEVAIITGRKSKLVEDRMTTLGITHLYQG---------QSNKLIAFSDLLEKLAIAPEQVAYIGDDLIDWP 126 (183)
T ss_pred HHHHHHHCCCEEEEEeCCCcHHHHHHHHHcCCceeecC---------CCcHHHHHHHHHHHhCCCHHHEEEECCCHHHHH
Confidence 56777889999999999999999999999998876651 356789999999999999999999999999999
Q ss_pred HHHhcCCCEEEEcCCCChhhhhccCCcEEecCCC
Q 025896 196 AGVAAGLPVVGLTTRNPEHVLLEANPTFLIKDYD 229 (246)
Q Consensus 196 ~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i~~~~ 229 (246)
+++.+|+.++ +. +..+.....++++++...
T Consensus 127 ~a~~aG~~~~-v~---~~~~~~~~~a~~v~~~~~ 156 (183)
T PRK09484 127 VMEKVGLSVA-VA---DAHPLLLPRADYVTRIAG 156 (183)
T ss_pred HHHHCCCeEe-cC---ChhHHHHHhCCEEecCCC
Confidence 9999999854 42 344455567899997433
No 79
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=99.74 E-value=1.2e-17 Score=130.50 Aligned_cols=127 Identities=17% Similarity=0.114 Sum_probs=85.5
Q ss_pred cccHHHHHHHHHHcCCeEEEEeCCCH-----HHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHcCCCCCcE
Q 025896 110 ISGLDKVKKWIEDRGLKRAAVTNAPR-----ENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEMLKVSKDHT 184 (246)
Q Consensus 110 ~~~~~~~l~~l~~~g~~i~i~s~~~~-----~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~ 184 (246)
++++.++++.++..+..+.++++... ...+...+.+++...+......+....+..++.+++.+++.+|++++++
T Consensus 139 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ei~~~~~~K~~~l~~l~~~~gi~~~e~ 218 (272)
T PRK10530 139 FTQVDSLAQAARQVNAIWKFALTHEDLPQLQHFAKHVEHELGLECEWSWHDQVDIARKGNSKGKRLTQWVEAQGWSMKNV 218 (272)
T ss_pred eEEcccHHHHHhhcCCcEEEEEecCCHHHHHHHHHHHhhhcCceEEEecCceEEEecCCCChHHHHHHHHHHcCCCHHHe
Confidence 45666777777776666666665432 2233333444433111000011223344557789999999999999999
Q ss_pred EEEecChhhhHHHHhcCCCEEEEcCCCChhhhhccCCcEEecCCCChhhHHHHhhh
Q 025896 185 FVFEDSVSGIKAGVAAGLPVVGLTTRNPEHVLLEANPTFLIKDYDDPKLWSALEEL 240 (246)
Q Consensus 185 ~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i~~~~el~~~~~l~~~ 240 (246)
++|||+.||++|++.+|+.+++ ++..++. +..|++++.+..+-++...++++
T Consensus 219 i~~GD~~NDi~m~~~ag~~vam---gna~~~l-k~~Ad~v~~~n~~dGv~~~l~~~ 270 (272)
T PRK10530 219 VAFGDNFNDISMLEAAGLGVAM---GNADDAV-KARADLVIGDNTTPSIAEFIYSH 270 (272)
T ss_pred EEeCCChhhHHHHHhcCceEEe---cCchHHH-HHhCCEEEecCCCCcHHHHHHHH
Confidence 9999999999999999975443 3434444 56899999999999999888765
No 80
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=99.74 E-value=5.5e-17 Score=121.92 Aligned_cols=99 Identities=15% Similarity=0.147 Sum_probs=81.2
Q ss_pred ccCCCcccHHHHHHHHHHcCCeEEEEeCCC----HHHHHHHHHhcCC--CCcceEEEecCCCCCCCCChHHHHHHHHHcC
Q 025896 105 EQLKPISGLDKVKKWIEDRGLKRAAVTNAP----RENAELMISKLGL--SDFFQVVILGDECERAKPFPDPYFKALEMLK 178 (246)
Q Consensus 105 ~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~----~~~~~~~l~~~~l--~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~ 178 (246)
....++||+.++|++|+++|++++++||+. .......++.+|+ .++|+.+++++.. .||++. ..+++++
T Consensus 111 ~~a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Llk~~gip~~~~f~vil~gd~~--~K~~K~---~~l~~~~ 185 (237)
T PRK11009 111 EFSIPKEVARQLIDMHVKRGDSIYFITGRTATKTETVSKTLADDFHIPADNMNPVIFAGDKP--GQYTKT---QWLKKKN 185 (237)
T ss_pred ccCcchHHHHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHHHHcCCCcccceeEEEcCCCC--CCCCHH---HHHHhcC
Confidence 457899999999999999999999999964 3456666677999 7889888877653 556553 3556666
Q ss_pred CCCCcEEEEecChhhhHHHHhcCCCEEEEcCCCC
Q 025896 179 VSKDHTFVFEDSVSGIKAGVAAGLPVVGLTTRNP 212 (246)
Q Consensus 179 ~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~ 212 (246)
+ ++||||+.+|+.+|+++|+.++.+.++.+
T Consensus 186 i----~I~IGDs~~Di~aA~~AGi~~I~v~~G~~ 215 (237)
T PRK11009 186 I----RIFYGDSDNDITAAREAGARGIRILRAAN 215 (237)
T ss_pred C----eEEEcCCHHHHHHHHHcCCcEEEEecCCC
Confidence 6 89999999999999999999999999854
No 81
>PRK10444 UMP phosphatase; Provisional
Probab=99.73 E-value=2e-18 Score=131.70 Aligned_cols=72 Identities=21% Similarity=0.261 Sum_probs=62.5
Q ss_pred CCCCCCChHHHHHHHHHcCCCCCcEEEEecCh-hhhHHHHhcCCCEEEEcCCCCh-hhhh--ccCCcEEecCCCCh
Q 025896 160 CERAKPFPDPYFKALEMLKVSKDHTFVFEDSV-SGIKAGVAAGLPVVGLTTRNPE-HVLL--EANPTFLIKDYDDP 231 (246)
Q Consensus 160 ~~~~kp~~~~~~~~~~~~~~~~~~~~~igD~~-~Di~~a~~~G~~~i~v~~~~~~-~~~~--~~~~~~~i~~~~el 231 (246)
...+||+|..+..+++++++++++++||||+. +|+.+|+.+|+.++++.+|... .+.. ...|+++++++.++
T Consensus 170 ~~~gKP~~~~~~~~~~~~~~~~~~~v~IGD~~~tDi~~A~~~G~~~vlV~~G~~~~~~l~~~~~~pd~~~~sl~el 245 (248)
T PRK10444 170 FYVGKPSPWIIRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLETILVLSGVSTLDDIDSMPFRPSWIYPSVADI 245 (248)
T ss_pred cccCCCCHHHHHHHHHHcCCCcccEEEECCCcHHHHHHHHHcCCCEEEECCCCCCHHHHhcCCCCCCEEECCHHHh
Confidence 34579999999999999999999999999998 8999999999999999998543 3332 25799999999885
No 82
>PRK11590 hypothetical protein; Provisional
Probab=99.73 E-value=9.8e-16 Score=114.83 Aligned_cols=175 Identities=13% Similarity=0.026 Sum_probs=106.3
Q ss_pred CcceEEEeCCCccccChhhHHHHHHHHH-HHhcCCCCCCCchHHHHHHhcCCCHHHHHHH------------hCCCCchh
Q 025896 21 PLEAVLFDVDGTLCDSDPLHHYAFREML-QEIGFNDGVPITEDFFVENIAGKHNIDIAKI------------LFPDDLPR 87 (246)
Q Consensus 21 ~~k~iifD~DGTL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~ 87 (246)
+.|+++|||||||++.+ ....+...+ +++|+ ..........+.|......... ........
T Consensus 5 ~~k~~iFD~DGTL~~~d--~~~~~~~~~~~~~g~----~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~g~~~~~ 78 (211)
T PRK11590 5 ERRVVFFDLDGTLHQQD--MFGSFLRYLLRRQPL----NLLLVLPLLPVIGLGLLVKGRAARWPMSLLLWGCTFGHSEAR 78 (211)
T ss_pred cceEEEEecCCCCcccc--hHHHHHHHHHHhcch----hhHHHhHHHHHhccCcccchhhhhhhHHHHHHHHHcCCCHHH
Confidence 45799999999999444 445555555 77743 2222111222233332221111 11113333
Q ss_pred hhhhHHHHHHHHHHHhhccCCCcccHHHHH-HHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecC--------
Q 025896 88 GLKFCEDKEAMFRKLASEQLKPISGLDKVK-KWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGD-------- 158 (246)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~-------- 158 (246)
.....+.+.+.+.. ...++||+.+.| +.+++.|++++|+|+.....++..++.+++.. .+.++++.
T Consensus 79 ~~~~~~~f~~~~~~----~~~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il~~l~~~~-~~~~i~t~l~~~~tg~ 153 (211)
T PRK11590 79 LQALEADFVRWFRD----NVTAFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVYFDTPWLP-RVNLIASQMQRRYGGW 153 (211)
T ss_pred HHHHHHHHHHHHHH----hCcCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHccccc-cCceEEEEEEEEEccE
Confidence 44444444443332 257799999999 56888999999999999999999999988522 22222221
Q ss_pred CCCCCCCChHHHHHHHHHcCCCCCcEEEEecChhhhHHHHhcCCCEEEE
Q 025896 159 ECERAKPFPDPYFKALEMLKVSKDHTFVFEDSVSGIKAGVAAGLPVVGL 207 (246)
Q Consensus 159 ~~~~~kp~~~~~~~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v 207 (246)
..+...-..+-..++-+.++.+...+.+.|||.+|+++...+|-+ +.|
T Consensus 154 ~~g~~c~g~~K~~~l~~~~~~~~~~~~aY~Ds~~D~pmL~~a~~~-~~v 201 (211)
T PRK11590 154 VLTLRCLGHEKVAQLERKIGTPLRLYSGYSDSKQDNPLLYFCQHR-WRV 201 (211)
T ss_pred ECCccCCChHHHHHHHHHhCCCcceEEEecCCcccHHHHHhCCCC-EEE
Confidence 111111122334455555677778889999999999999999976 455
No 83
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=99.73 E-value=7.1e-17 Score=111.01 Aligned_cols=91 Identities=19% Similarity=0.346 Sum_probs=81.7
Q ss_pred CcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEEEe
Q 025896 109 PISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEMLKVSKDHTFVFE 188 (246)
Q Consensus 109 ~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~ig 188 (246)
..|.+++.+.++++.|+++.|+||++......+.+++|+. .+ ....||.+..++++++++++++++|+|||
T Consensus 47 ~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l~v~----fi-----~~A~KP~~~~fr~Al~~m~l~~~~vvmVG 117 (175)
T COG2179 47 ATPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKLGVP----FI-----YRAKKPFGRAFRRALKEMNLPPEEVVMVG 117 (175)
T ss_pred CCHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhcCCc----ee-----ecccCccHHHHHHHHHHcCCChhHEEEEc
Confidence 3455678889999999999999999999999999999875 22 24689999999999999999999999999
Q ss_pred cCh-hhhHHHHhcCCCEEEEc
Q 025896 189 DSV-SGIKAGVAAGLPVVGLT 208 (246)
Q Consensus 189 D~~-~Di~~a~~~G~~~i~v~ 208 (246)
|.. .|+.++..+|+.+|+|.
T Consensus 118 DqL~TDVlggnr~G~~tIlV~ 138 (175)
T COG2179 118 DQLFTDVLGGNRAGMRTILVE 138 (175)
T ss_pred chhhhhhhcccccCcEEEEEE
Confidence 999 99999999999999994
No 84
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.72 E-value=8.4e-17 Score=127.34 Aligned_cols=105 Identities=15% Similarity=0.052 Sum_probs=96.3
Q ss_pred cCCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCC-cceEEEecC-------CCCCCCCChHHHHHHHHHc
Q 025896 106 QLKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSD-FFQVVILGD-------ECERAKPFPDPYFKALEML 177 (246)
Q Consensus 106 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~-~f~~~~~~~-------~~~~~kp~~~~~~~~~~~~ 177 (246)
...++|++.++|++|++.|++++++|+.+....+..++.+++.. +|+.+++.+ +.+..||+|..+..+++++
T Consensus 185 ~~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l~~l~~~~~~f~~i~~~~~~~~~~~~~~~~kp~p~~~~~~l~~~ 264 (300)
T PHA02530 185 EDKPNPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTVEWLRQTDIWFDDLIGRPPDMHFQREQGDKRPDDVVKEEIFWEK 264 (300)
T ss_pred cCCCChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHHHHHHHcCCchhhhhCCcchhhhcccCCCCCCcHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999986 899888877 3456799999999999999
Q ss_pred CC-CCCcEEEEecChhhhHHHHhcCCCEEEEcCC
Q 025896 178 KV-SKDHTFVFEDSVSGIKAGVAAGLPVVGLTTR 210 (246)
Q Consensus 178 ~~-~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~ 210 (246)
+. .+++|++|||+.+|+.+|+++|+.++++.+|
T Consensus 265 ~~~~~~~~~~vgD~~~d~~~a~~~Gi~~i~v~~g 298 (300)
T PHA02530 265 IAPKYDVLLAVDDRDQVVDMWRRIGLECWQVAPG 298 (300)
T ss_pred hccCceEEEEEcCcHHHHHHHHHhCCeEEEecCC
Confidence 88 6799999999999999999999999999765
No 85
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=99.72 E-value=5.3e-18 Score=129.18 Aligned_cols=108 Identities=17% Similarity=0.146 Sum_probs=79.6
Q ss_pred EEEEeCCCHHHHHHHHHhcCCCCcceEEEe---cCCCCCCCCChHHHHHHHHHcCCCCCcEEEEecChhhhHHHHhcCCC
Q 025896 127 RAAVTNAPRENAELMISKLGLSDFFQVVIL---GDECERAKPFPDPYFKALEMLKVSKDHTFVFEDSVSGIKAGVAAGLP 203 (246)
Q Consensus 127 i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~---~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~ 203 (246)
+.+.++.....+...+++++.. +..+.+ .+....+.+++..++.+++.+|++++++++|||+.||++|++.+|++
T Consensus 118 ~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~ei~~~~~~Kg~al~~l~~~~~i~~~~~i~~GD~~NDi~m~~~ag~~ 195 (230)
T PRK01158 118 VALRRTVPVEEVRELLEELGLD--LEIVDSGFAIHIKSPGVNKGTGLKKLAELMGIDPEEVAAIGDSENDLEMFEVAGFG 195 (230)
T ss_pred eeecccccHHHHHHHHHHcCCc--EEEEecceEEEEeeCCCChHHHHHHHHHHhCCCHHHEEEECCchhhHHHHHhcCce
Confidence 3444454555666677766532 222221 23335566788999999999999999999999999999999999988
Q ss_pred EEEEcCCCChhhhhccCCcEEecCCCChhhHHHHhhh
Q 025896 204 VVGLTTRNPEHVLLEANPTFLIKDYDDPKLWSALEEL 240 (246)
Q Consensus 204 ~i~v~~~~~~~~~~~~~~~~~i~~~~el~~~~~l~~~ 240 (246)
+++- +..+..+..+++++.+..+-++...++++
T Consensus 196 vam~----Na~~~vk~~a~~v~~~n~~~Gv~~~l~~~ 228 (230)
T PRK01158 196 VAVA----NADEELKEAADYVTEKSYGEGVAEAIEHL 228 (230)
T ss_pred EEec----CccHHHHHhcceEecCCCcChHHHHHHHH
Confidence 7665 34445556789999999999999888765
No 86
>PLN02645 phosphoglycolate phosphatase
Probab=99.71 E-value=6.4e-18 Score=133.66 Aligned_cols=120 Identities=15% Similarity=0.081 Sum_probs=85.7
Q ss_pred HHHHHHcCCeEEEEeCCCHHH-HHHHHHhcCCCCcceEEEecCCC---CCCCCChHHHHHHHHHcCCCCCcEEEEecCh-
Q 025896 117 KKWIEDRGLKRAAVTNAPREN-AELMISKLGLSDFFQVVILGDEC---ERAKPFPDPYFKALEMLKVSKDHTFVFEDSV- 191 (246)
Q Consensus 117 l~~l~~~g~~i~i~s~~~~~~-~~~~l~~~~l~~~f~~~~~~~~~---~~~kp~~~~~~~~~~~~~~~~~~~~~igD~~- 191 (246)
...|++++-...|+||.+... ....+...|...+|+.+...... ..+||+|..|..+++++++++++++||||++
T Consensus 179 ~~~l~~~~g~~~i~tn~d~~~~~~~~~~~~g~g~~~~~i~~~~~~~~~~~gKP~p~~~~~a~~~~~~~~~~~~~VGD~~~ 258 (311)
T PLN02645 179 TLCIRENPGCLFIATNRDAVTHLTDAQEWAGAGSMVGAIKGSTEREPLVVGKPSTFMMDYLANKFGIEKSQICMVGDRLD 258 (311)
T ss_pred HHHHhcCCCCEEEEeCCCCCCCCCCCCCccchHHHHHHHHHHhCCCcccCCCChHHHHHHHHHHcCCCcccEEEEcCCcH
Confidence 344444223467777776533 22223344555666666554432 2469999999999999999999999999998
Q ss_pred hhhHHHHhcCCCEEEEcCCCC-hhhhhc----cCCcEEecCCCChhhHHHHh
Q 025896 192 SGIKAGVAAGLPVVGLTTRNP-EHVLLE----ANPTFLIKDYDDPKLWSALE 238 (246)
Q Consensus 192 ~Di~~a~~~G~~~i~v~~~~~-~~~~~~----~~~~~~i~~~~el~~~~~l~ 238 (246)
+|+.+|+.+|+.+++|.+|.. ..+... ..|+++++++.+ +..+++
T Consensus 259 ~Di~~A~~aG~~~ilV~~G~~~~~~~~~~~~~~~pd~~~~~~~~--l~~~~~ 308 (311)
T PLN02645 259 TDILFGQNGGCKTLLVLSGVTSESMLLSPENKIQPDFYTSKISD--FLTLKA 308 (311)
T ss_pred HHHHHHHHcCCCEEEEcCCCCCHHHHHhccCCCCCCEEECCHHH--HHHHhh
Confidence 999999999999999998843 333322 579999999998 555443
No 87
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=99.69 E-value=5.1e-17 Score=124.62 Aligned_cols=119 Identities=18% Similarity=0.201 Sum_probs=81.4
Q ss_pred cccHHHHHHHHHHcCCeEEEEeCCCHHHHHH--HH-HhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEE
Q 025896 110 ISGLDKVKKWIEDRGLKRAAVTNAPRENAEL--MI-SKLGLSDFFQVVILGDECERAKPFPDPYFKALEMLKVSKDHTFV 186 (246)
Q Consensus 110 ~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~--~l-~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~ 186 (246)
++.....+..++ .|.+ .++||.+...... .. ..-.+...++...+.+....+||+|.+|+.++++++++++++++
T Consensus 123 y~~l~~a~~~l~-~g~~-~i~tN~D~~~~~~~~~~~~~G~~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~~~~~~~~~~~ 200 (249)
T TIGR01457 123 YEKFATATLAIR-KGAH-FIGTNGDLAIPTERGLLPGNGSLITVLEVATGVKPVYIGKPNAIIMEKAVEHLGTEREETLM 200 (249)
T ss_pred HHHHHHHHHHHH-CCCe-EEEECCCCCCCCCCCCCCCcHHHHHHHHHHhCCCccccCCChHHHHHHHHHHcCCCcccEEE
Confidence 344555555564 4565 6667765432211 00 00011122333334455567899999999999999999999999
Q ss_pred EecCh-hhhHHHHhcCCCEEEEcCCCCh-hhhhc--cCCcEEecCCCC
Q 025896 187 FEDSV-SGIKAGVAAGLPVVGLTTRNPE-HVLLE--ANPTFLIKDYDD 230 (246)
Q Consensus 187 igD~~-~Di~~a~~~G~~~i~v~~~~~~-~~~~~--~~~~~~i~~~~e 230 (246)
|||+. +|+.+|+++|+.++++.+|... .+... ..|+++++++.+
T Consensus 201 VGD~~~~Di~~a~~~G~~~v~v~~G~~~~~~~~~~~~~pd~~v~~l~~ 248 (249)
T TIGR01457 201 VGDNYLTDIRAGIDAGIDTLLVHTGVTKAEEVAGLPIAPTHVVSSLAE 248 (249)
T ss_pred ECCCchhhHHHHHHcCCcEEEEcCCCCCHHHHhcCCCCCCEEeCChhh
Confidence 99997 8999999999999999998533 33322 478999999877
No 88
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=99.68 E-value=3.6e-15 Score=111.45 Aligned_cols=113 Identities=17% Similarity=0.208 Sum_probs=86.7
Q ss_pred ccCCCcccHHHHHHHH--HHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCC---------------CC-C---
Q 025896 105 EQLKPISGLDKVKKWI--EDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDEC---------------ER-A--- 163 (246)
Q Consensus 105 ~~~~~~~~~~~~l~~l--~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~---------------~~-~--- 163 (246)
..+++.||+.++++.+ ++.|+.+.|+|+++..+++.+|++.|+...|+.|++.... +. .
T Consensus 68 ~~ip~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL~~~gl~~~f~~I~TNpa~~~~~G~l~v~pyh~h~C~~C~~ 147 (234)
T PF06888_consen 68 RSIPIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETILEHHGLRDCFSEIFTNPACFDADGRLRVRPYHSHGCSLCPP 147 (234)
T ss_pred HcCCCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHHHhCCCccccceEEeCCceecCCceEEEeCccCCCCCcCCC
Confidence 4689999999999999 4579999999999999999999999999999888765210 00 1
Q ss_pred -CCChHHHHHHHHH---cCCCCCcEEEEecChhhhHHHHhcCCC-EEEEcCCCChhhhh
Q 025896 164 -KPFPDPYFKALEM---LKVSKDHTFVFEDSVSGIKAGVAAGLP-VVGLTTRNPEHVLL 217 (246)
Q Consensus 164 -kp~~~~~~~~~~~---~~~~~~~~~~igD~~~Di~~a~~~G~~-~i~v~~~~~~~~~~ 217 (246)
.-|...+.++++. .|+..++++||||+.||+-++...+-. .++.+.++.-....
T Consensus 148 NmCK~~il~~~~~~~~~~g~~~~rviYiGDG~nD~Cp~~~L~~~D~v~~R~~~~l~~~i 206 (234)
T PF06888_consen 148 NMCKGKILERLLQEQAQRGVPYDRVIYIGDGRNDFCPALRLRPRDVVFPRKGYPLHKLI 206 (234)
T ss_pred ccchHHHHHHHHHHHhhcCCCcceEEEECCCCCCcCcccccCCCCEEecCCCChHHHHH
Confidence 1134556666665 367789999999999999999987765 56666665444433
No 89
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=99.67 E-value=3.2e-15 Score=106.53 Aligned_cols=124 Identities=17% Similarity=0.253 Sum_probs=98.6
Q ss_pred cCCCcccHHHHHHHHHHcCCeEEEEeCCC---------------HHHHHHHHHhcCCCCcceEEEecCC-----CCCCCC
Q 025896 106 QLKPISGLDKVKKWIEDRGLKRAAVTNAP---------------RENAELMISKLGLSDFFQVVILGDE-----CERAKP 165 (246)
Q Consensus 106 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~---------------~~~~~~~l~~~~l~~~f~~~~~~~~-----~~~~kp 165 (246)
...+.||+.+.+..|++.|++++++||-+ ...+...|+..|+. |+.++.+.. ...+||
T Consensus 29 ~~~~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~~l~~~gv~--id~i~~Cph~p~~~c~cRKP 106 (181)
T COG0241 29 DFQFIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFDKLHNKMLKILASQGVK--IDGILYCPHHPEDNCDCRKP 106 (181)
T ss_pred HhccCccHHHHHHHHHhCCCeEEEEECCCCccccCccHHHHHHHHHHHHHHHHHcCCc--cceEEECCCCCCCCCcccCC
Confidence 46788999999999999999999999942 12345566666764 888877643 467999
Q ss_pred ChHHHHHHHHHcCCCCCcEEEEecChhhhHHHHhcCCCEEEEcCCCChhhhhccCCcEEecCCCCh
Q 025896 166 FPDPYFKALEMLKVSKDHTFVFEDSVSGIKAGVAAGLPVVGLTTRNPEHVLLEANPTFLIKDYDDP 231 (246)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i~~~~el 231 (246)
++.++..+++++++++++.++|||+..|+++|.++|++.+.+.++...........+++.+++.+.
T Consensus 107 ~~gm~~~~~~~~~iD~~~s~~VGD~~~Dlq~a~n~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (181)
T COG0241 107 KPGMLLSALKEYNIDLSRSYVVGDRLTDLQAAENAGIKGVLVLTGIGVTTDGAGRAKWVFDSLAEF 172 (181)
T ss_pred ChHHHHHHHHHhCCCccceEEecCcHHHHHHHHHCCCCceEEEcCcccccccccccccccccHHHH
Confidence 999999999999999999999999999999999999998888777433333323456677777763
No 90
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=99.66 E-value=2.3e-15 Score=114.58 Aligned_cols=71 Identities=27% Similarity=0.379 Sum_probs=61.7
Q ss_pred CCCCCChHHHHHHHHHcCCCCCcEEEEecCh-hhhHHHHhcCCCEEEEcCC-CChhhhh--ccCCcEEecCCCCh
Q 025896 161 ERAKPFPDPYFKALEMLKVSKDHTFVFEDSV-SGIKAGVAAGLPVVGLTTR-NPEHVLL--EANPTFLIKDYDDP 231 (246)
Q Consensus 161 ~~~kp~~~~~~~~~~~~~~~~~~~~~igD~~-~Di~~a~~~G~~~i~v~~~-~~~~~~~--~~~~~~~i~~~~el 231 (246)
..+||++.+|+.+++.++..++++++|||++ +||.+|+++|+.+++|.+| +...+.. ...|+++++++.++
T Consensus 187 ~~GKP~~~i~~~al~~~~~~~~~~~mVGD~~~TDI~~a~~~G~~t~LV~TGv~~~~~~~~~~~~p~~v~~sl~~~ 261 (269)
T COG0647 187 VIGKPSPAIYEAALEKLGLDRSEVLMVGDRLDTDILGAKAAGLDTLLVLTGVSSAEDLDRAEVKPTYVVDSLAEL 261 (269)
T ss_pred ccCCCCHHHHHHHHHHhCCCcccEEEEcCCchhhHHHHHHcCCCEEEEccCCCChhhhhhhccCCcchHhhHHHH
Confidence 3579999999999999999999999999999 8999999999999999999 3333322 35789999999983
No 91
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=99.63 E-value=2.2e-14 Score=99.86 Aligned_cols=121 Identities=12% Similarity=0.132 Sum_probs=97.8
Q ss_pred cCCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhc---CCCCcceEEEecCCCCCCCCChHHHHHHHHHcCCCCC
Q 025896 106 QLKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKL---GLSDFFQVVILGDECERAKPFPDPYFKALEMLKVSKD 182 (246)
Q Consensus 106 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~---~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~ 182 (246)
+.++||++.+.|++.++.|.+++|+|+++...+..++.+. .+..+|++.+... ...|-....|.+++...|++|.
T Consensus 101 kahlypDav~~ik~wk~~g~~vyiYSSGSV~AQkL~Fghs~agdL~~lfsGyfDtt--iG~KrE~~SY~kIa~~iGl~p~ 178 (229)
T COG4229 101 KAHLYPDAVQAIKRWKALGMRVYIYSSGSVKAQKLFFGHSDAGDLNSLFSGYFDTT--IGKKRESQSYAKIAGDIGLPPA 178 (229)
T ss_pred ccccCHhHHHHHHHHHHcCCcEEEEcCCCchhHHHhhcccccccHHhhhcceeecc--ccccccchhHHHHHHhcCCCch
Confidence 4679999999999999999999999999988888777654 4667777776542 2355677889999999999999
Q ss_pred cEEEEecChhhhHHHHhcCCCEEEEcCCCChhhhhccCCcEEecCCC
Q 025896 183 HTFVFEDSVSGIKAGVAAGLPVVGLTTRNPEHVLLEANPTFLIKDYD 229 (246)
Q Consensus 183 ~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i~~~~ 229 (246)
+++|+.|..+.+.+|+.+|+.++.+.++.+.... ......++.|+.
T Consensus 179 eilFLSDn~~EL~AA~~vGl~t~l~~R~g~~P~~-d~~~~~~~~sf~ 224 (229)
T COG4229 179 EILFLSDNPEELKAAAGVGLATGLAVRPGNAPVP-DGQGFLVYKSFE 224 (229)
T ss_pred heEEecCCHHHHHHHHhcchheeeeecCCCCCCC-CCcCceeeechh
Confidence 9999999999999999999999999887543321 133455666665
No 92
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=99.62 E-value=3.8e-15 Score=118.43 Aligned_cols=91 Identities=12% Similarity=0.105 Sum_probs=83.1
Q ss_pred CCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHh----cCCCCcceEEEecCCCCCCCCChHHHHHHHHHcCCCCCc
Q 025896 108 KPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISK----LGLSDFFQVVILGDECERAKPFPDPYFKALEMLKVSKDH 183 (246)
Q Consensus 108 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~----~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~ 183 (246)
.+++|+.++|+.|++.|+.++|+|+++...+...+++ +++.++|+.+..+ .||++..+..+++++++.+++
T Consensus 31 ~~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l~~~~~~~~~~~~f~~~~~~-----~~pk~~~i~~~~~~l~i~~~~ 105 (320)
T TIGR01686 31 PLHKTLQEKIKTLKKQGFLLALASKNDEDDAKKVFERRKDFILQAEDFDARSIN-----WGPKSESLRKIAKKLNLGTDS 105 (320)
T ss_pred ccHHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHhCccccCcHHHeeEEEEe-----cCchHHHHHHHHHHhCCCcCc
Confidence 3588999999999999999999999999999999999 8888889887544 579999999999999999999
Q ss_pred EEEEecChhhhHHHHhcCCC
Q 025896 184 TFVFEDSVSGIKAGVAAGLP 203 (246)
Q Consensus 184 ~~~igD~~~Di~~a~~~G~~ 203 (246)
++||||+..|+.+++.++-.
T Consensus 106 ~vfidD~~~d~~~~~~~lp~ 125 (320)
T TIGR01686 106 FLFIDDNPAERANVKITLPV 125 (320)
T ss_pred EEEECCCHHHHHHHHHHCCC
Confidence 99999999999999997654
No 93
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=99.61 E-value=1.1e-15 Score=119.32 Aligned_cols=81 Identities=11% Similarity=-0.033 Sum_probs=67.5
Q ss_pred CCCCCCChHHHHHHHHHcCCCCCcEEEEecChhhhHHHHhcCCCEEEEcCCCChhhhhccCCcE--EecCCCChhhHHHH
Q 025896 160 CERAKPFPDPYFKALEMLKVSKDHTFVFEDSVSGIKAGVAAGLPVVGLTTRNPEHVLLEANPTF--LIKDYDDPKLWSAL 237 (246)
Q Consensus 160 ~~~~kp~~~~~~~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~--~i~~~~el~~~~~l 237 (246)
...+..|..+++.+++.+|++++++++|||+.||++|.+.+|.++++- ++.+..+..+++ ++.+..+-++...|
T Consensus 183 ~~~g~sKg~al~~l~~~~gi~~~~v~afGD~~NDi~Ml~~ag~~vAm~----Na~~~vK~~A~~~~v~~~n~edGva~~l 258 (272)
T PRK15126 183 LPVGCNKGAALAVLSQHLGLSLADCMAFGDAMNDREMLGSVGRGFIMG----NAMPQLRAELPHLPVIGHCRNQAVSHYL 258 (272)
T ss_pred ecCCCChHHHHHHHHHHhCCCHHHeEEecCCHHHHHHHHHcCCceecc----CChHHHHHhCCCCeecCCCcchHHHHHH
Confidence 356667889999999999999999999999999999999999877666 444445556665 78899999999999
Q ss_pred hhhhcCC
Q 025896 238 EELDKNK 244 (246)
Q Consensus 238 ~~~~~~~ 244 (246)
+++-..|
T Consensus 259 ~~~~~~~ 265 (272)
T PRK15126 259 THWLDYP 265 (272)
T ss_pred HHHhcCC
Confidence 8877655
No 94
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=99.60 E-value=1.8e-15 Score=106.87 Aligned_cols=95 Identities=21% Similarity=0.239 Sum_probs=86.2
Q ss_pred cCCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCC-cceEEEecCCCCCCCCChHHHHHHHHHcCCCCCcE
Q 025896 106 QLKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSD-FFQVVILGDECERAKPFPDPYFKALEMLKVSKDHT 184 (246)
Q Consensus 106 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~-~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~ 184 (246)
...++||+.++|++|+ .+++++|+|++....++..++++++.. +|+.++++++....||. |.+.+++++.+|++|
T Consensus 43 ~v~l~pG~~e~L~~L~-~~~~l~I~Ts~~~~~~~~il~~l~~~~~~f~~i~~~~d~~~~KP~---~~k~l~~l~~~p~~~ 118 (148)
T smart00577 43 YVKKRPGVDEFLKRAS-ELFELVVFTAGLRMYADPVLDLLDPKKYFGYRRLFRDECVFVKGK---YVKDLSLLGRDLSNV 118 (148)
T ss_pred EEEECCCHHHHHHHHH-hccEEEEEeCCcHHHHHHHHHHhCcCCCEeeeEEECccccccCCe---EeecHHHcCCChhcE
Confidence 4678999999999998 469999999999999999999999864 56999999998888886 888999999999999
Q ss_pred EEEecChhhhHHHHhcCCCE
Q 025896 185 FVFEDSVSGIKAGVAAGLPV 204 (246)
Q Consensus 185 ~~igD~~~Di~~a~~~G~~~ 204 (246)
++|||+.+|+.++.++|+..
T Consensus 119 i~i~Ds~~~~~aa~~ngI~i 138 (148)
T smart00577 119 IIIDDSPDSWPFHPENLIPI 138 (148)
T ss_pred EEEECCHHHhhcCccCEEEe
Confidence 99999999999999998653
No 95
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=99.59 E-value=1.6e-15 Score=115.12 Aligned_cols=110 Identities=15% Similarity=0.027 Sum_probs=80.4
Q ss_pred EEEEeCCCHHHHHHHHHhcCCCCcc-eEEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEEEecChhhhHHHHhcCCCEE
Q 025896 127 RAAVTNAPRENAELMISKLGLSDFF-QVVILGDECERAKPFPDPYFKALEMLKVSKDHTFVFEDSVSGIKAGVAAGLPVV 205 (246)
Q Consensus 127 i~i~s~~~~~~~~~~l~~~~l~~~f-~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i 205 (246)
..+.+..........++.++..-.+ ......+......++...++.+++++|++++++++|||+.||++|++.+|+.++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~K~~~i~~l~~~~~i~~~~~i~~GD~~NDi~m~~~ag~~va 189 (225)
T TIGR01482 110 VKMRYGIDVDTVREIIKELGLNLVAVDSGFDIHILPQGVNKGVAVKKLKEKLGIKPGETLVCGDSENDIDLFEVPGFGVA 189 (225)
T ss_pred EEEeecCCHHHHHHHHHhcCceEEEecCCcEEEEeeCCCCHHHHHHHHHHHhCCCHHHEEEECCCHhhHHHHHhcCceEE
Confidence 4455555566667777776643110 001112333556778899999999999999999999999999999999998766
Q ss_pred EEcCCCChhhhhccCCcEEecCCCChh----hHHHHhhh
Q 025896 206 GLTTRNPEHVLLEANPTFLIKDYDDPK----LWSALEEL 240 (246)
Q Consensus 206 ~v~~~~~~~~~~~~~~~~~i~~~~el~----~~~~l~~~ 240 (246)
+- ++.+..+..+++++.+..+-+ +...|+++
T Consensus 190 m~----Na~~~~k~~A~~vt~~~~~~G~~~~v~~~l~~~ 224 (225)
T TIGR01482 190 VA----NAQPELKEWADYVTESPYGEGGAEAIGEILQAI 224 (225)
T ss_pred cC----ChhHHHHHhcCeecCCCCCCcHHHHHHHHHHhh
Confidence 66 455556678999999999988 77777664
No 96
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=99.59 E-value=1.9e-15 Score=117.46 Aligned_cols=79 Identities=19% Similarity=0.165 Sum_probs=66.8
Q ss_pred CCCCCCChHHHHHHHHHcCCCCCcEEEEecChhhhHHHHhcCCCEEEEcCCCChhhhhccCCcEEecCCCChhhHHHHhh
Q 025896 160 CERAKPFPDPYFKALEMLKVSKDHTFVFEDSVSGIKAGVAAGLPVVGLTTRNPEHVLLEANPTFLIKDYDDPKLWSALEE 239 (246)
Q Consensus 160 ~~~~kp~~~~~~~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i~~~~el~~~~~l~~ 239 (246)
...+..+..+++.+++++|++++++++|||+.||++|.+.+|.++++- ++.+.....++++..+..+-++...++.
T Consensus 184 ~~~g~~K~~al~~l~~~lgi~~~~v~afGD~~ND~~Ml~~ag~gvam~----Na~~~~k~~A~~vt~~n~~~Gv~~~l~~ 259 (264)
T COG0561 184 TPKGVSKGYALQRLAKLLGIKLEEVIAFGDSTNDIEMLEVAGLGVAMG----NADEELKELADYVTTSNDEDGVAEALEK 259 (264)
T ss_pred ecCCCchHHHHHHHHHHhCCCHHHeEEeCCccccHHHHHhcCeeeecc----CCCHHHHhhCCcccCCccchHHHHHHHH
Confidence 356677888999999999999999999999999999999999877766 4445555677788899999999999887
Q ss_pred hhc
Q 025896 240 LDK 242 (246)
Q Consensus 240 ~~~ 242 (246)
+..
T Consensus 260 ~~~ 262 (264)
T COG0561 260 LLL 262 (264)
T ss_pred Hhc
Confidence 653
No 97
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=99.58 E-value=1.1e-15 Score=119.27 Aligned_cols=78 Identities=14% Similarity=0.034 Sum_probs=67.3
Q ss_pred CCCCCCChHHHHHHHHHcCCCCCcEEEEecChhhhHHHHhcCCCEEEEcCCCChhhhhccCCcEEecCCCChhhHHHHhh
Q 025896 160 CERAKPFPDPYFKALEMLKVSKDHTFVFEDSVSGIKAGVAAGLPVVGLTTRNPEHVLLEANPTFLIKDYDDPKLWSALEE 239 (246)
Q Consensus 160 ~~~~kp~~~~~~~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i~~~~el~~~~~l~~ 239 (246)
...+..+..+++.+++.+|++++++++|||+.||++|.+.+|.++++- ++.+..+..|++++.+..+-++...+++
T Consensus 191 ~~~gvsKg~al~~l~~~~gi~~~~v~afGD~~NDi~Ml~~ag~~vAm~----NA~~~vK~~A~~vt~~n~~dGva~~i~~ 266 (270)
T PRK10513 191 LDKRVNKGTGVKSLAEHLGIKPEEVMAIGDQENDIAMIEYAGVGVAMG----NAIPSVKEVAQFVTKSNLEDGVAFAIEK 266 (270)
T ss_pred eCCCCChHHHHHHHHHHhCCCHHHEEEECCchhhHHHHHhCCceEEec----CccHHHHHhcCeeccCCCcchHHHHHHH
Confidence 456777889999999999999999999999999999999999977776 4555566789999999999999888877
Q ss_pred hh
Q 025896 240 LD 241 (246)
Q Consensus 240 ~~ 241 (246)
+.
T Consensus 267 ~~ 268 (270)
T PRK10513 267 YV 268 (270)
T ss_pred Hh
Confidence 53
No 98
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=99.58 E-value=1.5e-13 Score=104.97 Aligned_cols=131 Identities=9% Similarity=0.113 Sum_probs=94.1
Q ss_pred ccCCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEE------EecCCCCCCCCCh---------HH
Q 025896 105 EQLKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVV------ILGDECERAKPFP---------DP 169 (246)
Q Consensus 105 ~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~------~~~~~~~~~kp~~---------~~ 169 (246)
..+.+.||+.++++.|+++|++++|+|++....++..++++|+.+.+..+ +..+....++|.| ..
T Consensus 118 ~~l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~lgl~~~~~~IvSN~L~f~~dGvltG~~~P~i~~~~K~~~v 197 (277)
T TIGR01544 118 SDVMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQAGVYHPNVKVVSNFMDFDEDGVLKGFKGPLIHTFNKNHDV 197 (277)
T ss_pred cCCccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHcCCCCcCceEEeeeEEECCCCeEeCCCCCcccccccHHHH
Confidence 36889999999999999999999999999999999999999987556555 3333444456666 56
Q ss_pred HHHHHHHcC--CCCCcEEEEecChhhhHHHHhc-CC---CEEEEcCCCChhhhhc--cCCcEEecCCCChhhHH
Q 025896 170 YFKALEMLK--VSKDHTFVFEDSVSGIKAGVAA-GL---PVVGLTTRNPEHVLLE--ANPTFLIKDYDDPKLWS 235 (246)
Q Consensus 170 ~~~~~~~~~--~~~~~~~~igD~~~Di~~a~~~-G~---~~i~v~~~~~~~~~~~--~~~~~~i~~~~el~~~~ 235 (246)
++...+.++ ..+++|++|||+.+|+.||..+ .. -.|++...+....+.. ..=|.|+-+-.-+.++.
T Consensus 198 ~~~~~~~~~~~~~~~~vI~vGDs~~Dl~ma~g~~~~~~~l~igfln~~~e~~l~~y~~~~Divl~~D~t~~v~~ 271 (277)
T TIGR01544 198 ALRNTEYFNQLKDRSNIILLGDSQGDLRMADGVANVEHILKIGYLNDRVDELLEKYMDSYDIVLVQDETLEVAN 271 (277)
T ss_pred HHHHHHHhCccCCcceEEEECcChhhhhHhcCCCcccceEEEEecccCHHHHHHHHHHhCCEEEECCCCchHHH
Confidence 667888888 8999999999999999998876 32 2444444432222221 23455555444444443
No 99
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=99.57 E-value=7.4e-15 Score=91.26 Aligned_cols=70 Identities=27% Similarity=0.344 Sum_probs=62.0
Q ss_pred CCCCChHHHHHHHHHcCCCCCcEEEEecC-hhhhHHHHhcCCCEEEEcCCCChhhhh---ccCCcEEecCCCCh
Q 025896 162 RAKPFPDPYFKALEMLKVSKDHTFVFEDS-VSGIKAGVAAGLPVVGLTTRNPEHVLL---EANPTFLIKDYDDP 231 (246)
Q Consensus 162 ~~kp~~~~~~~~~~~~~~~~~~~~~igD~-~~Di~~a~~~G~~~i~v~~~~~~~~~~---~~~~~~~i~~~~el 231 (246)
.+||+|.++..++++++++++++++|||+ ..|+.+|+++|+.+++|.+|....+.. ...|+++++++.|+
T Consensus 2 ~gKP~p~~~~~a~~~~~~~~~~~~~VGD~~~~Di~~a~~~G~~~ilV~tG~~~~~~~~~~~~~pd~vv~~l~e~ 75 (75)
T PF13242_consen 2 CGKPSPGMLEQALKRLGVDPSRCVMVGDSLETDIEAAKAAGIDTILVLTGVYSPEDLEKAEHKPDYVVDDLKEA 75 (75)
T ss_dssp CSTTSHHHHHHHHHHHTSGGGGEEEEESSTTTHHHHHHHTTSEEEEESSSSSCCCGHHHSSSTTSEEESSGGGH
T ss_pred CCCCcHHHHHHHHHHcCCCHHHEEEEcCCcHhHHHHHHHcCCcEEEECCCCCCHHHHhccCCCCCEEECCHHhC
Confidence 58999999999999999999999999999 699999999999999999995443332 36899999999873
No 100
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=99.57 E-value=3.1e-14 Score=118.35 Aligned_cols=92 Identities=26% Similarity=0.305 Sum_probs=80.9
Q ss_pred CcccHHHHHHHHHHcCCeEEEEeCCCH------------HHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHH
Q 025896 109 PISGLDKVKKWIEDRGLKRAAVTNAPR------------ENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEM 176 (246)
Q Consensus 109 ~~~~~~~~l~~l~~~g~~i~i~s~~~~------------~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~ 176 (246)
++||+.+.|++|++.|++++|+||... ..+..+++.+|+. |+.+++.+.....||++.++..++++
T Consensus 198 l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~~iL~~lgip--fdviia~~~~~~RKP~pGm~~~a~~~ 275 (526)
T TIGR01663 198 IFPEIPEKLKELEADGFKICIFTNQGGIARGKINADDFKAKIEAIVAKLGVP--FQVFIAIGAGFYRKPLTGMWDHLKEE 275 (526)
T ss_pred cccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHHHHHHHHHHHHHcCCc--eEEEEeCCCCCCCCCCHHHHHHHHHh
Confidence 689999999999999999999999755 3477888889986 88888777778899999999999999
Q ss_pred cC----CCCCcEEEEecChhhhHHHHhcCC
Q 025896 177 LK----VSKDHTFVFEDSVSGIKAGVAAGL 202 (246)
Q Consensus 177 ~~----~~~~~~~~igD~~~Di~~a~~~G~ 202 (246)
++ +++++++||||+..|+.+++.+|.
T Consensus 276 ~~~~~~Id~~~S~~VGDaagr~~~g~~ag~ 305 (526)
T TIGR01663 276 ANDGTEIQEDDCFFVGDAAGRPANGKAAGK 305 (526)
T ss_pred cCcccCCCHHHeEEeCCcccchHHHHhcCC
Confidence 85 899999999999999888777765
No 101
>PRK08238 hypothetical protein; Validated
Probab=99.56 E-value=2.6e-13 Score=112.44 Aligned_cols=99 Identities=16% Similarity=0.073 Sum_probs=81.9
Q ss_pred cCCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHcCCCCCcEE
Q 025896 106 QLKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEMLKVSKDHTF 185 (246)
Q Consensus 106 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~ 185 (246)
..+++|++.+++++++++|++++++|+.+....+..++++|+ ||.++++++....||++.. ..+.+.++ .++++
T Consensus 70 ~lp~~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~lGl---Fd~Vigsd~~~~~kg~~K~-~~l~~~l~--~~~~~ 143 (479)
T PRK08238 70 TLPYNEEVLDYLRAERAAGRKLVLATASDERLAQAVAAHLGL---FDGVFASDGTTNLKGAAKA-AALVEAFG--ERGFD 143 (479)
T ss_pred hCCCChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCC---CCEEEeCCCccccCCchHH-HHHHHHhC--ccCee
Confidence 456789999999999999999999999999999999999987 8999988877666665433 33445554 36689
Q ss_pred EEecChhhhHHHHhcCCCEEEEcCCC
Q 025896 186 VFEDSVSGIKAGVAAGLPVVGLTTRN 211 (246)
Q Consensus 186 ~igD~~~Di~~a~~~G~~~i~v~~~~ 211 (246)
++||+.+|+++++.+| ..+.|+.+.
T Consensus 144 yvGDS~~Dlp~~~~A~-~av~Vn~~~ 168 (479)
T PRK08238 144 YAGNSAADLPVWAAAR-RAIVVGASP 168 (479)
T ss_pred EecCCHHHHHHHHhCC-CeEEECCCH
Confidence 9999999999999999 677786553
No 102
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=99.56 E-value=2.2e-15 Score=113.48 Aligned_cols=106 Identities=11% Similarity=-0.007 Sum_probs=76.1
Q ss_pred eEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEEEecChhhhHHHHhcCCCEE
Q 025896 126 KRAAVTNAPRENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEMLKVSKDHTFVFEDSVSGIKAGVAAGLPVV 205 (246)
Q Consensus 126 ~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i 205 (246)
.+++++......+...++..++..++.. ...+....+..+...++.++++++++++++++|||+.||++|++.+|+.++
T Consensus 109 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~ei~~~~~~K~~~i~~l~~~~~i~~~~~i~iGDs~ND~~ml~~ag~~va 187 (215)
T TIGR01487 109 LVIMREGKDVDEVREIIKERGLNLVDSG-FAIHIMKKGVDKGVGVEKLKELLGIKPEEVAAIGDSENDIDLFRVVGFKVA 187 (215)
T ss_pred EEEecCCccHHHHHHHHHhCCeEEEecC-ceEEEecCCCChHHHHHHHHHHhCCCHHHEEEECCCHHHHHHHHhCCCeEE
Confidence 3444566566667777777665432211 111223456667789999999999999999999999999999999998877
Q ss_pred EEcCCCChhhhhccCCcEEecCCCChhhHHH
Q 025896 206 GLTTRNPEHVLLEANPTFLIKDYDDPKLWSA 236 (246)
Q Consensus 206 ~v~~~~~~~~~~~~~~~~~i~~~~el~~~~~ 236 (246)
+- +..+..+..+++++.+..+-++...
T Consensus 188 m~----na~~~~k~~A~~v~~~~~~~Gv~~~ 214 (215)
T TIGR01487 188 VA----NADDQLKEIADYVTSNPYGEGVVEV 214 (215)
T ss_pred cC----CccHHHHHhCCEEcCCCCCchhhhh
Confidence 76 3445555678999998888666553
No 103
>PRK10976 putative hydrolase; Provisional
Probab=99.55 E-value=2.3e-15 Score=117.12 Aligned_cols=78 Identities=15% Similarity=0.021 Sum_probs=65.4
Q ss_pred CCCCCCChHHHHHHHHHcCCCCCcEEEEecChhhhHHHHhcCCCEEEEcCCCChhhhhccCCc--EEecCCCChhhHHHH
Q 025896 160 CERAKPFPDPYFKALEMLKVSKDHTFVFEDSVSGIKAGVAAGLPVVGLTTRNPEHVLLEANPT--FLIKDYDDPKLWSAL 237 (246)
Q Consensus 160 ~~~~kp~~~~~~~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~--~~i~~~~el~~~~~l 237 (246)
...+..+..+++.+++.+|++++++++|||+.||++|.+.+|.++++- ++.+..+..++ +++.+..|-++...|
T Consensus 185 ~~~gvsKg~al~~l~~~lgi~~~~viafGD~~NDi~Ml~~ag~~vAm~----NA~~~vK~~A~~~~v~~~n~edGVa~~l 260 (266)
T PRK10976 185 MAGGVSKGHALEAVAKKLGYSLKDCIAFGDGMNDAEMLSMAGKGCIMG----NAHQRLKDLLPELEVIGSNADDAVPHYL 260 (266)
T ss_pred EcCCCChHHHHHHHHHHcCCCHHHeEEEcCCcccHHHHHHcCCCeeec----CCcHHHHHhCCCCeecccCchHHHHHHH
Confidence 355667889999999999999999999999999999999999987777 44444555655 788899999999988
Q ss_pred hhhh
Q 025896 238 EELD 241 (246)
Q Consensus 238 ~~~~ 241 (246)
+++.
T Consensus 261 ~~~~ 264 (266)
T PRK10976 261 RKLY 264 (266)
T ss_pred HHHh
Confidence 8753
No 104
>PTZ00445 p36-lilke protein; Provisional
Probab=99.54 E-value=1.1e-13 Score=99.87 Aligned_cols=103 Identities=17% Similarity=0.177 Sum_probs=81.5
Q ss_pred CCCcccHHHHHHHHHHcCCeEEEEeCCCHH---------------HHHHHHHhcCCCCcceEEEecC-----------CC
Q 025896 107 LKPISGLDKVKKWIEDRGLKRAAVTNAPRE---------------NAELMISKLGLSDFFQVVILGD-----------EC 160 (246)
Q Consensus 107 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~---------------~~~~~l~~~~l~~~f~~~~~~~-----------~~ 160 (246)
..+.|+...++.+|++.|++++|||-++.. .++..++..+-..-...++... ..
T Consensus 74 ~~~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~~li~~~lk~s~~~~~i~~~~~yyp~~w~~p~~y~~~ 153 (219)
T PTZ00445 74 TSVTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRYISGDRMVEAALKKSKCDFKIKKVYAYYPKFWQEPSDYRPL 153 (219)
T ss_pred ccCCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcceechHHHHHHHHHhcCccceeeeeeeeCCcccCChhhhhhh
Confidence 346677889999999999999999987653 3555565544333334444322 23
Q ss_pred CCCCCChHH--H--HHHHHHcCCCCCcEEEEecChhhhHHHHhcCCCEEEEcC
Q 025896 161 ERAKPFPDP--Y--FKALEMLKVSKDHTFVFEDSVSGIKAGVAAGLPVVGLTT 209 (246)
Q Consensus 161 ~~~kp~~~~--~--~~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~ 209 (246)
+..||.|.. | +++++++|+.|++++||+|+..++++|++.|+.++.+..
T Consensus 154 gl~KPdp~iK~yHle~ll~~~gl~peE~LFIDD~~~NVeaA~~lGi~ai~f~~ 206 (219)
T PTZ00445 154 GLDAPMPLDKSYHLKQVCSDFNVNPDEILFIDDDMNNCKNALKEGYIALHVTG 206 (219)
T ss_pred cccCCCccchHHHHHHHHHHcCCCHHHeEeecCCHHHHHHHHHCCCEEEEcCC
Confidence 678999999 8 999999999999999999999999999999999999954
No 105
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=99.53 E-value=6.3e-14 Score=99.56 Aligned_cols=104 Identities=13% Similarity=0.214 Sum_probs=75.0
Q ss_pred ccCCCcccHHHHHHHHHHcCCeEEEEeCC-CHHHHHHHHHhcCCC----------CcceEEEecCCCCCCCCChHHHHHH
Q 025896 105 EQLKPISGLDKVKKWIEDRGLKRAAVTNA-PRENAELMISKLGLS----------DFFQVVILGDECERAKPFPDPYFKA 173 (246)
Q Consensus 105 ~~~~~~~~~~~~l~~l~~~g~~i~i~s~~-~~~~~~~~l~~~~l~----------~~f~~~~~~~~~~~~kp~~~~~~~~ 173 (246)
..+.+||++.++|++|+++|++++++|-. .+..++..|+.+++. ++|+..-... + ++..-|+.+
T Consensus 42 ~~v~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~~l~i~~~~~~~~~~~~~F~~~eI~~----g-sK~~Hf~~i 116 (169)
T PF12689_consen 42 EEVSLYPDVPEILQELKERGVKLAVASRTDEPDWARELLKLLEIDDADGDGVPLIEYFDYLEIYP----G-SKTTHFRRI 116 (169)
T ss_dssp -EE---TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHHHHTT-C----------CCECEEEESS----S--HHHHHHHH
T ss_pred CEEEeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHHHhcCCCccccccccchhhcchhheec----C-chHHHHHHH
Confidence 46899999999999999999999999954 467899999999999 8887654333 2 567789999
Q ss_pred HHHcCCCCCcEEEEecChhhhHHHHhcCCCEEEEcCCCCh
Q 025896 174 LEMLKVSKDHTFVFEDSVSGIKAGVAAGLPVVGLTTRNPE 213 (246)
Q Consensus 174 ~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~ 213 (246)
.++.|++.++++||+|...++...+..|+.++.+.+|-..
T Consensus 117 ~~~tgI~y~eMlFFDDe~~N~~~v~~lGV~~v~v~~Glt~ 156 (169)
T PF12689_consen 117 HRKTGIPYEEMLFFDDESRNIEVVSKLGVTCVLVPDGLTW 156 (169)
T ss_dssp HHHH---GGGEEEEES-HHHHHHHHTTT-EEEE-SSS--H
T ss_pred HHhcCCChhHEEEecCchhcceeeEecCcEEEEeCCCCCH
Confidence 9999999999999999999999999999999999887433
No 106
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=99.52 E-value=3.5e-12 Score=95.20 Aligned_cols=118 Identities=9% Similarity=-0.012 Sum_probs=78.6
Q ss_pred CchhhhhhHHHHHHHHHHHhhccCCCcccHHHHHH-HHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecC----
Q 025896 84 DLPRGLKFCEDKEAMFRKLASEQLKPISGLDKVKK-WIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGD---- 158 (246)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~---- 158 (246)
....+.+....+.+.+.. ...++|++.+.|+ .+++.|++++|+|+.....++.+.+..++....+ +++..
T Consensus 74 ~~~~l~~~~~~f~~~~~~----~~~l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~~~~~~~~~-~i~t~le~~ 148 (210)
T TIGR01545 74 REAHLQDLEADFVAAFRD----KVTAFPLVAERLRQYLESSDADIWLITGSPQPLVEAVYFDSNFIHRLN-LIASQIERG 148 (210)
T ss_pred CHHHHHHHHHHHHHHHHH----hCCCCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHhccccccCc-EEEEEeEEe
Confidence 555555555544444433 2468999999996 7888999999999999999999998865532222 22211
Q ss_pred CCCC--CC--CChHHHHHHHHHcCCCCCcEEEEecChhhhHHHHhcCCCEEEE
Q 025896 159 ECER--AK--PFPDPYFKALEMLKVSKDHTFVFEDSVSGIKAGVAAGLPVVGL 207 (246)
Q Consensus 159 ~~~~--~k--p~~~~~~~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v 207 (246)
+.+. +. -..+-..++-+.++.+.+.+.+.|||.+|++|...+|.+ +.|
T Consensus 149 ~gg~~~g~~c~g~~Kv~rl~~~~~~~~~~~~aYsDS~~D~pmL~~a~~~-~~V 200 (210)
T TIGR01545 149 NGGWVLPLRCLGHEKVAQLEQKIGSPLKLYSGYSDSKQDNPLLAFCEHR-WRV 200 (210)
T ss_pred CCceEcCccCCChHHHHHHHHHhCCChhheEEecCCcccHHHHHhCCCc-EEE
Confidence 1111 11 122334455555666667789999999999999999976 445
No 107
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=99.52 E-value=1.9e-14 Score=97.89 Aligned_cols=101 Identities=18% Similarity=0.229 Sum_probs=83.7
Q ss_pred HHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEEEecChhhhH
Q 025896 116 VKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEMLKVSKDHTFVFEDSVSGIK 195 (246)
Q Consensus 116 ~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~igD~~~Di~ 195 (246)
-++.|.+.|++++|+|+.+....+.+.+.+|+..+|-++ +.+...+..+++++++.+++|.||||..+|+.
T Consensus 43 Gik~l~~~Gi~vAIITGr~s~ive~Ra~~LGI~~~~qG~---------~dK~~a~~~L~~~~~l~~e~~ayiGDD~~Dlp 113 (170)
T COG1778 43 GIKLLLKSGIKVAIITGRDSPIVEKRAKDLGIKHLYQGI---------SDKLAAFEELLKKLNLDPEEVAYVGDDLVDLP 113 (170)
T ss_pred HHHHHHHcCCeEEEEeCCCCHHHHHHHHHcCCceeeech---------HhHHHHHHHHHHHhCCCHHHhhhhcCccccHH
Confidence 356667899999999999999999999999998766543 23667899999999999999999999999999
Q ss_pred HHHhcCCCEEEEcCCCChhhhhccCCcEEecCCC
Q 025896 196 AGVAAGLPVVGLTTRNPEHVLLEANPTFLIKDYD 229 (246)
Q Consensus 196 ~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i~~~~ 229 (246)
+.+.+|++++.. ++.+.....++|+.+.-.
T Consensus 114 vm~~vGls~a~~----dAh~~v~~~a~~Vt~~~G 143 (170)
T COG1778 114 VMEKVGLSVAVA----DAHPLLKQRADYVTSKKG 143 (170)
T ss_pred HHHHcCCccccc----ccCHHHHHhhHhhhhccC
Confidence 999999987776 455555556777766443
No 108
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=99.52 E-value=2.3e-14 Score=111.80 Aligned_cols=116 Identities=20% Similarity=0.160 Sum_probs=74.2
Q ss_pred HHHHcCCeEEEE---eCCCHHHHHHHHHhcCCC----CcceEEEecCCCCCCCCChHHHHHHHHHcCCCC-CcEEEEecC
Q 025896 119 WIEDRGLKRAAV---TNAPRENAELMISKLGLS----DFFQVVILGDECERAKPFPDPYFKALEMLKVSK-DHTFVFEDS 190 (246)
Q Consensus 119 ~l~~~g~~i~i~---s~~~~~~~~~~l~~~~l~----~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~-~~~~~igD~ 190 (246)
.++..++...++ +......+...++..++. .+|. +..... .+...++.+++.+++++ +++++|||+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-----ei~~~~-~Kg~al~~l~~~~~i~~~~~v~~~GDs 216 (273)
T PRK00192 143 LAKDREFSEPFLWNGSEAAKERFEEALKRLGLKVTRGGRFL-----HLLGGG-DKGKAVRWLKELYRRQDGVETIALGDS 216 (273)
T ss_pred HHHhcccCCceeecCchHHHHHHHHHHHHcCCEEEECCeEE-----EEeCCC-CHHHHHHHHHHHHhccCCceEEEEcCC
Confidence 344445554444 333334455555555543 2222 222344 57778999999999999 999999999
Q ss_pred hhhhHHHHhcCCCEEEEcCCCChhhhhccCC-cEEe--cCCCChhhHHHHhhh
Q 025896 191 VSGIKAGVAAGLPVVGLTTRNPEHVLLEANP-TFLI--KDYDDPKLWSALEEL 240 (246)
Q Consensus 191 ~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~-~~~i--~~~~el~~~~~l~~~ 240 (246)
.||++|++.+|+++++-+....-.+.....+ +.+. ++..+-++...++++
T Consensus 217 ~NDi~m~~~ag~~vam~NA~~~~k~~~~~~a~~~v~~~~~~~~~Gv~~~l~~~ 269 (273)
T PRK00192 217 PNDLPMLEAADIAVVVPGPDGPNPPLLPGIADGEFILASAPGPEGWAEAINKL 269 (273)
T ss_pred hhhHHHHHhCCeeEEeCCCCCCCcccCccccCCceEEecCCCcHHHHHHHHHH
Confidence 9999999999998887743322221111233 4555 677777888888764
No 109
>PLN02887 hydrolase family protein
Probab=99.51 E-value=1.6e-14 Score=121.61 Aligned_cols=77 Identities=17% Similarity=0.032 Sum_probs=66.7
Q ss_pred CCCCCCChHHHHHHHHHcCCCCCcEEEEecChhhhHHHHhcCCCEEEEcCCCChhhhhccCCcEEecCCCChhhHHHHhh
Q 025896 160 CERAKPFPDPYFKALEMLKVSKDHTFVFEDSVSGIKAGVAAGLPVVGLTTRNPEHVLLEANPTFLIKDYDDPKLWSALEE 239 (246)
Q Consensus 160 ~~~~kp~~~~~~~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i~~~~el~~~~~l~~ 239 (246)
+..+..|..+++.+++.+|++++++++|||+.||++|.+.+|.++++- ++.+..+..|++|+.+..+-++...|++
T Consensus 502 ~p~gvSKG~ALk~L~e~lGI~~eeviAFGDs~NDIeMLe~AG~gVAMg----NA~eeVK~~Ad~VT~sNdEDGVA~aLek 577 (580)
T PLN02887 502 VPPGTSKGNGVKMLLNHLGVSPDEIMAIGDGENDIEMLQLASLGVALS----NGAEKTKAVADVIGVSNDEDGVADAIYR 577 (580)
T ss_pred ecCCCCHHHHHHHHHHHcCCCHHHEEEEecchhhHHHHHHCCCEEEeC----CCCHHHHHhCCEEeCCCCcCHHHHHHHH
Confidence 356677889999999999999999999999999999999999877766 4555566789999999999999988876
Q ss_pred h
Q 025896 240 L 240 (246)
Q Consensus 240 ~ 240 (246)
+
T Consensus 578 ~ 578 (580)
T PLN02887 578 Y 578 (580)
T ss_pred h
Confidence 4
No 110
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=99.49 E-value=5.5e-14 Score=109.52 Aligned_cols=84 Identities=7% Similarity=-0.058 Sum_probs=66.3
Q ss_pred CCCCCCCChHHHHHHHHHcCC---CCCcEEEEecChhhhHHHHhcCCCEEEEcCCCChhhh--hccCCcEEecCCCChhh
Q 025896 159 ECERAKPFPDPYFKALEMLKV---SKDHTFVFEDSVSGIKAGVAAGLPVVGLTTRNPEHVL--LEANPTFLIKDYDDPKL 233 (246)
Q Consensus 159 ~~~~~kp~~~~~~~~~~~~~~---~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~--~~~~~~~~i~~~~el~~ 233 (246)
....+..|..+++.+++.+|+ ++++++.|||+.||++|.+.+|.++++-+.......+ ....++++.....+-++
T Consensus 181 i~~~g~sKg~al~~l~~~lgi~~~~~~~viafGDs~NDi~Ml~~ag~gvAM~~~~~~~~~l~~~~~~~~~~~~~~~~~g~ 260 (271)
T PRK03669 181 VLDASAGKDQAANWLIATYQQLSGTRPTTLGLGDGPNDAPLLDVMDYAVVVKGLNREGVHLQDDDPARVYRTQREGPEGW 260 (271)
T ss_pred EecCCCCHHHHHHHHHHHHHhhcCCCceEEEEcCCHHHHHHHHhCCEEEEecCCCCCCcccccccCCceEeccCCCcHHH
Confidence 345677788999999999999 9999999999999999999999877666422111122 23478899999999999
Q ss_pred HHHHhhhhc
Q 025896 234 WSALEELDK 242 (246)
Q Consensus 234 ~~~l~~~~~ 242 (246)
...++.+-+
T Consensus 261 ~~~l~~~~~ 269 (271)
T PRK03669 261 REGLDHFFS 269 (271)
T ss_pred HHHHHHHHh
Confidence 998887654
No 111
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=99.46 E-value=2.3e-12 Score=101.67 Aligned_cols=105 Identities=18% Similarity=0.183 Sum_probs=86.1
Q ss_pred cCCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhc-C-------CCCcceEEEecCCC-----------------
Q 025896 106 QLKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKL-G-------LSDFFQVVILGDEC----------------- 160 (246)
Q Consensus 106 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~-~-------l~~~f~~~~~~~~~----------------- 160 (246)
.+...||+.++|++|+++|++++|+||++...+...++.+ | +.++||.++++...
T Consensus 182 yv~~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~l~g~~~~~~~w~~yFD~IIt~a~KP~FF~~~~pf~~v~~~~ 261 (343)
T TIGR02244 182 YVLRDPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKYLLGPFLGEHDWRDYFDVVIVDARKPGFFTEGRPFRQVDVET 261 (343)
T ss_pred HhccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhhCCcccccchHhhCcEEEeCCCCCcccCCCCceEEEeCCC
Confidence 3567999999999999999999999999999999999996 7 88999998876421
Q ss_pred CCCCCC-------h-----HHHHHHHHHcCCCCCcEEEEecCh-hhhHHHH-hcCCCEEEEcCC
Q 025896 161 ERAKPF-------P-----DPYFKALEMLKVSKDHTFVFEDSV-SGIKAGV-AAGLPVVGLTTR 210 (246)
Q Consensus 161 ~~~kp~-------~-----~~~~~~~~~~~~~~~~~~~igD~~-~Di~~a~-~~G~~~i~v~~~ 210 (246)
+..++. . .....+.+.+++.++++++|||+. .|+..++ .+||.++++...
T Consensus 262 g~~~~~~~~~l~~g~vY~gGn~~~~~~~l~~~~~~vlYvGD~i~~Di~~~kk~~Gw~TvlI~pE 325 (343)
T TIGR02244 262 GSLKWGEVDGLEPGKVYSGGSLKQFHELLKWRGKEVLYFGDHIYGDLLRSKKKRGWRTAAIIPE 325 (343)
T ss_pred CcccCCccccccCCCeEeCCCHHHHHHHHCCCCCcEEEECCcchHHHHhhHHhcCcEEEEEchh
Confidence 101111 1 125578888899999999999999 9999998 899999999543
No 112
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=99.44 E-value=6e-13 Score=100.62 Aligned_cols=70 Identities=16% Similarity=0.188 Sum_probs=59.8
Q ss_pred CCCCCChHHHHHHHHHcCCCCCcEEEEecCh-hhhHHHHhcCCCEEEEcCCCChhhhh-------ccCCcEEecCCCC
Q 025896 161 ERAKPFPDPYFKALEMLKVSKDHTFVFEDSV-SGIKAGVAAGLPVVGLTTRNPEHVLL-------EANPTFLIKDYDD 230 (246)
Q Consensus 161 ~~~kp~~~~~~~~~~~~~~~~~~~~~igD~~-~Di~~a~~~G~~~i~v~~~~~~~~~~-------~~~~~~~i~~~~e 230 (246)
-.+||++.++..+++++++.|++|+||||++ .||.-++.+|++++++.+|-...+.. ...|||.++++.+
T Consensus 221 v~GKP~~~m~~~l~~~~~i~psRt~mvGDRL~TDIlFG~~~G~~TLLvltGv~~led~~~~~~~~~~~PDyy~~~l~d 298 (306)
T KOG2882|consen 221 VLGKPSTFMFEYLLEKFNIDPSRTCMVGDRLDTDILFGKNCGFKTLLVLSGVTTLEDILEAQGDNKMVPDYYADSLGD 298 (306)
T ss_pred ecCCCCHHHHHHHHHHcCCCcceEEEEcccchhhhhHhhccCcceEEEecCcCcHHHHHhcccccCCCCchHHhhHHH
Confidence 4689999999999999999999999999999 89999999999999999995432222 2348888888877
No 113
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=99.44 E-value=2.2e-13 Score=105.41 Aligned_cols=73 Identities=18% Similarity=0.140 Sum_probs=59.7
Q ss_pred CCCCCCChHHHHHHHHHcCCCCCcEEEEecChhhhHHHHhcCCCEEEEcCCCChhhhhccCCcEEecCCCChhhHHH
Q 025896 160 CERAKPFPDPYFKALEMLKVSKDHTFVFEDSVSGIKAGVAAGLPVVGLTTRNPEHVLLEANPTFLIKDYDDPKLWSA 236 (246)
Q Consensus 160 ~~~~kp~~~~~~~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i~~~~el~~~~~ 236 (246)
...+..|...++.+++.++++++++++|||+.||++|++.+|+++++. ++.+.....+++++.+..+-++...
T Consensus 183 ~~~~~~K~~~i~~~~~~~~~~~~~~~~~GD~~nD~~m~~~~~~~~a~~----na~~~~k~~a~~~~~~n~~dGV~~~ 255 (256)
T TIGR00099 183 TAKGVSKGSALQSLAEALGISLEDVIAFGDGMNDIEMLEAAGYGVAMG----NADEELKALADYVTDSNNEDGVALA 255 (256)
T ss_pred cCCCCChHHHHHHHHHHcCCCHHHEEEeCCcHHhHHHHHhCCceeEec----CchHHHHHhCCEEecCCCCcchhhh
Confidence 355667889999999999999999999999999999999999986664 2333445678999999888666543
No 114
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=99.43 E-value=3e-12 Score=92.22 Aligned_cols=117 Identities=16% Similarity=0.153 Sum_probs=83.3
Q ss_pred ccCCCcccHHHHHHHHHHcCC-eEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCC----C------CC-------CC-
Q 025896 105 EQLKPISGLDKVKKWIEDRGL-KRAAVTNAPRENAELMISKLGLSDFFQVVILGDEC----E------RA-------KP- 165 (246)
Q Consensus 105 ~~~~~~~~~~~~l~~l~~~g~-~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~----~------~~-------kp- 165 (246)
..++..||+.++++.+++.|. .+.|+|+.+...++.+|+++++.++|..|++.... | .. .|
T Consensus 81 r~iP~~Pgmv~lik~~ak~g~~eliIVSDaNsfFIe~~Lea~~~~d~F~~IfTNPa~~da~G~L~v~pyH~~hsC~~CPs 160 (256)
T KOG3120|consen 81 RSIPIVPGMVRLIKSAAKLGCFELIIVSDANSFFIEEILEAAGIHDLFSEIFTNPACVDASGRLLVRPYHTQHSCNLCPS 160 (256)
T ss_pred hcCCCCccHHHHHHHHHhCCCceEEEEecCchhHHHHHHHHccHHHHHHHHhcCCcccCCCCcEEeecCCCCCccCcCch
Confidence 368899999999999999985 99999999999999999999999999888764211 0 00 11
Q ss_pred ---ChHHHHHHHH---HcCCCCCcEEEEecChhhhHHHHhc-CCCEEEEcCCCChhhhhccCC
Q 025896 166 ---FPDPYFKALE---MLKVSKDHTFVFEDSVSGIKAGVAA-GLPVVGLTTRNPEHVLLEANP 221 (246)
Q Consensus 166 ---~~~~~~~~~~---~~~~~~~~~~~igD~~~Di~~a~~~-G~~~i~v~~~~~~~~~~~~~~ 221 (246)
+..++..+.. +-|+..++++|+||+-||+.+.... +..+++.+.|+.-.......|
T Consensus 161 NmCKg~Vl~~~~~s~~~~gv~yer~iYvGDG~nD~CP~l~Lr~~D~ampRkgfpl~k~~~~~p 223 (256)
T KOG3120|consen 161 NMCKGLVLDELVASQLKDGVRYERLIYVGDGANDFCPVLRLRACDVAMPRKGFPLWKLISANP 223 (256)
T ss_pred hhhhhHHHHHHHHHHhhcCCceeeEEEEcCCCCCcCcchhcccCceecccCCCchHhhhhcCc
Confidence 1122222222 2367778999999999999666554 556777777765444333333
No 115
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=99.42 E-value=1.1e-12 Score=100.33 Aligned_cols=110 Identities=10% Similarity=-0.026 Sum_probs=75.2
Q ss_pred CeEEEEeCCCH----HHHHHHHHhcCCCCcceEEEec----CCCCCCCCChHHHHHHHHHcCCCCCcEEEEecChhhhHH
Q 025896 125 LKRAAVTNAPR----ENAELMISKLGLSDFFQVVILG----DECERAKPFPDPYFKALEMLKVSKDHTFVFEDSVSGIKA 196 (246)
Q Consensus 125 ~~i~i~s~~~~----~~~~~~l~~~~l~~~f~~~~~~----~~~~~~kp~~~~~~~~~~~~~~~~~~~~~igD~~~Di~~ 196 (246)
+.+.+...... ..+...+...+.. +..+.++ +....+.+++.+++.++++++++++++++|||+.||++|
T Consensus 113 ~~i~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~ei~~~~~~K~~al~~l~~~~g~~~~~~i~~GD~~nD~~m 190 (236)
T TIGR02471 113 FKISYLLDPEGEPILPQIRQRLRQQSQA--AKVILSCGWFLDVLPLRASKGLALRYLSYRWGLPLEQILVAGDSGNDEEM 190 (236)
T ss_pred eeEEEEECcccchHHHHHHHHHHhccCC--EEEEEECCceEEEeeCCCChHHHHHHHHHHhCCCHHHEEEEcCCccHHHH
Confidence 45555544321 2344455554432 2333343 334667889999999999999999999999999999999
Q ss_pred HHhcCCCEEEEcCCCChhhhhccCCc----EEecCCCChhhHHHHhhh
Q 025896 197 GVAAGLPVVGLTTRNPEHVLLEANPT----FLIKDYDDPKLWSALEEL 240 (246)
Q Consensus 197 a~~~G~~~i~v~~~~~~~~~~~~~~~----~~i~~~~el~~~~~l~~~ 240 (246)
++.+|.++++- +..++.. ..++ +++++..+-++.+.|+.+
T Consensus 191 l~~~~~~iav~---na~~~~k-~~a~~~~~~v~~~~~~~Gv~~~i~~~ 234 (236)
T TIGR02471 191 LRGLTLGVVVG---NHDPELE-GLRHQQRIYFANNPHAFGILEGINHY 234 (236)
T ss_pred HcCCCcEEEEc---CCcHHHH-HhhcCCcEEEcCCCChhHHHHHHHhh
Confidence 99999766543 2333333 3455 788888888888888764
No 116
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=99.41 E-value=6.6e-12 Score=88.66 Aligned_cols=93 Identities=12% Similarity=0.161 Sum_probs=70.9
Q ss_pred ccCCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCC--cceEE--------EecCC----CCCCCCChHHH
Q 025896 105 EQLKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSD--FFQVV--------ILGDE----CERAKPFPDPY 170 (246)
Q Consensus 105 ~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~--~f~~~--------~~~~~----~~~~kp~~~~~ 170 (246)
...++.||++++..+||++|..++++|++....+..+...+|+.- .|-.. +.+.+ ...+--+++.+
T Consensus 85 ~k~~lT~Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~Lgi~~~n~yAN~l~fd~~Gk~~gfd~~~ptsdsggKa~~i 164 (227)
T KOG1615|consen 85 QKPTLTPGIRELVSRLHARGTQVYLISGGFRQLIEPVAEQLGIPKSNIYANELLFDKDGKYLGFDTNEPTSDSGGKAEVI 164 (227)
T ss_pred CCCccCCCHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHhCCcHhhhhhheeeeccCCcccccccCCccccCCccHHHH
Confidence 468899999999999999999999999999999999999999873 33221 21211 11122345566
Q ss_pred HHHHHHcCCCCCcEEEEecChhhhHHHHh
Q 025896 171 FKALEMLKVSKDHTFVFEDSVSGIKAGVA 199 (246)
Q Consensus 171 ~~~~~~~~~~~~~~~~igD~~~Di~~a~~ 199 (246)
..+.+ +.....++||||+.+|+++..-
T Consensus 165 ~~lrk--~~~~~~~~mvGDGatDlea~~p 191 (227)
T KOG1615|consen 165 ALLRK--NYNYKTIVMVGDGATDLEAMPP 191 (227)
T ss_pred HHHHh--CCChheeEEecCCccccccCCc
Confidence 66666 7777999999999999998665
No 117
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=99.40 E-value=1.5e-12 Score=96.35 Aligned_cols=87 Identities=16% Similarity=0.220 Sum_probs=62.7
Q ss_pred ccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCc--ceEEEecCC-C---C--CCC---CChHHHHHH---HHH
Q 025896 111 SGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDF--FQVVILGDE-C---E--RAK---PFPDPYFKA---LEM 176 (246)
Q Consensus 111 ~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~--f~~~~~~~~-~---~--~~k---p~~~~~~~~---~~~ 176 (246)
+++.++|++++++|++++|+|++....++.+++.+|+... +..-+.... . + .+. -+...++.+ ...
T Consensus 92 ~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~K~~~l~~~~~~~~~ 171 (192)
T PF12710_consen 92 PDAMELIRELKDNGIKVVIVSGSPDEIIEPIAERLGIDDDNVIGNELFDNGGGIFTGRITGSNCGGKAEALKELYIRDEE 171 (192)
T ss_dssp TTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTSSEGGEEEEEEECTTCCEEEEEEEEEEESHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEEEEEeeeecccceeeeeECCCCCCcHHHHHHHHHHHhhc
Confidence 5556999999999999999999999999999999998752 222221100 0 0 000 144455555 333
Q ss_pred cCCCCCcEEEEecChhhhHHHH
Q 025896 177 LKVSKDHTFVFEDSVSGIKAGV 198 (246)
Q Consensus 177 ~~~~~~~~~~igD~~~Di~~a~ 198 (246)
+....++++|||+.+|+.+++
T Consensus 172 -~~~~~~~~~iGDs~~D~~~lr 192 (192)
T PF12710_consen 172 -DIDPDRVIAIGDSINDLPMLR 192 (192)
T ss_dssp -THTCCEEEEEESSGGGHHHHH
T ss_pred -CCCCCeEEEEECCHHHHHHhC
Confidence 788899999999999999985
No 118
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=99.38 E-value=1.5e-11 Score=94.11 Aligned_cols=86 Identities=15% Similarity=0.240 Sum_probs=67.4
Q ss_pred cCCCcccHHHHHHHHHHcCCeEEEEeCCCHH---HHHHHHHhcCCCCc-ceEEEecCCCCCCCCChHHHHHHHHHcCCCC
Q 025896 106 QLKPISGLDKVKKWIEDRGLKRAAVTNAPRE---NAELMISKLGLSDF-FQVVILGDECERAKPFPDPYFKALEMLKVSK 181 (246)
Q Consensus 106 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~---~~~~~l~~~~l~~~-f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~ 181 (246)
...++||+.++|+.|+++|++++++|+.... .....++++|+... ++.++..+. .++++.....+.+.+++
T Consensus 116 ~a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~~Lkk~Gi~~~~~d~lllr~~---~~~K~~rr~~I~~~y~I-- 190 (266)
T TIGR01533 116 QAKPVAGALDFLNYANSKGVKIFYVSNRSEKEKAATLKNLKRFGFPQADEEHLLLKKD---KSSKESRRQKVQKDYEI-- 190 (266)
T ss_pred CCCcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHHHHHHcCcCCCCcceEEeCCC---CCCcHHHHHHHHhcCCE--
Confidence 5778999999999999999999999998743 45578888999754 466665542 34566777777777777
Q ss_pred CcEEEEecChhhhHHHH
Q 025896 182 DHTFVFEDSVSGIKAGV 198 (246)
Q Consensus 182 ~~~~~igD~~~Di~~a~ 198 (246)
+++|||..+|+..+.
T Consensus 191 --vl~vGD~~~Df~~~~ 205 (266)
T TIGR01533 191 --VLLFGDNLLDFDDFF 205 (266)
T ss_pred --EEEECCCHHHhhhhh
Confidence 899999999996543
No 119
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=99.36 E-value=3.5e-12 Score=97.74 Aligned_cols=91 Identities=13% Similarity=0.136 Sum_probs=75.4
Q ss_pred CCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHH--HHHHhcCCCC-cceEEEecCCCCCCCCChHHHHHHHHHcCCCCCc
Q 025896 107 LKPISGLDKVKKWIEDRGLKRAAVTNAPRENAE--LMISKLGLSD-FFQVVILGDECERAKPFPDPYFKALEMLKVSKDH 183 (246)
Q Consensus 107 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~--~~l~~~~l~~-~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~ 183 (246)
..++||+.++|++|+++|++++++||.++.... ..++++|+.. .|+.++++..... ..+...+++++..+++
T Consensus 23 ~~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~gl~~~~~~~Ii~s~~~~~-----~~l~~~~~~~~~~~~~ 97 (242)
T TIGR01459 23 NHTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLGINADLPEMIISSGEIAV-----QMILESKKRFDIRNGI 97 (242)
T ss_pred CccCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHCCCCccccceEEccHHHHH-----HHHHhhhhhccCCCce
Confidence 346899999999999999999999998876655 7889999987 8999988775432 3566777888899999
Q ss_pred EEEEecChhhhHHHHhcCC
Q 025896 184 TFVFEDSVSGIKAGVAAGL 202 (246)
Q Consensus 184 ~~~igD~~~Di~~a~~~G~ 202 (246)
+++|||+..|+.....+|.
T Consensus 98 ~~~vGd~~~d~~~~~~~~~ 116 (242)
T TIGR01459 98 IYLLGHLENDIINLMQCYT 116 (242)
T ss_pred EEEeCCcccchhhhcCCCc
Confidence 9999999999888766554
No 120
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=99.36 E-value=1.4e-11 Score=87.23 Aligned_cols=92 Identities=18% Similarity=0.173 Sum_probs=67.6
Q ss_pred CcccHHHHHHHHHHcCC--eEEEEeCC-------CHHHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHcCC
Q 025896 109 PISGLDKVKKWIEDRGL--KRAAVTNA-------PRENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEMLKV 179 (246)
Q Consensus 109 ~~~~~~~~l~~l~~~g~--~i~i~s~~-------~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~ 179 (246)
+.|.+.+.+++|++.+. +++|+||+ +...++..-+.+|+.-+-. ...|| ..+..+++.++.
T Consensus 60 i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~lgIpvl~h--------~~kKP--~~~~~i~~~~~~ 129 (168)
T PF09419_consen 60 IPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKALGIPVLRH--------RAKKP--GCFREILKYFKC 129 (168)
T ss_pred CCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhhCCcEEEe--------CCCCC--ccHHHHHHHHhh
Confidence 33445567777777755 59999998 3566777777888641101 23566 556667776654
Q ss_pred -----CCCcEEEEecCh-hhhHHHHhcCCCEEEEcCC
Q 025896 180 -----SKDHTFVFEDSV-SGIKAGVAAGLPVVGLTTR 210 (246)
Q Consensus 180 -----~~~~~~~igD~~-~Di~~a~~~G~~~i~v~~~ 210 (246)
+|+++++|||.+ .|+-+|...|+.++++..|
T Consensus 130 ~~~~~~p~eiavIGDrl~TDVl~gN~~G~~tilv~~g 166 (168)
T PF09419_consen 130 QKVVTSPSEIAVIGDRLFTDVLMGNRMGSYTILVTDG 166 (168)
T ss_pred ccCCCCchhEEEEcchHHHHHHHhhccCceEEEEecC
Confidence 599999999999 9999999999999999765
No 121
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=99.35 E-value=3.4e-11 Score=95.84 Aligned_cols=70 Identities=23% Similarity=0.181 Sum_probs=57.1
Q ss_pred CCCCCChHHHHHHHHHc--------CC-----CCCcEEEEecCh-hhhHHHHhcCCCEEEEcCC-CChhh-hhccCCcEE
Q 025896 161 ERAKPFPDPYFKALEML--------KV-----SKDHTFVFEDSV-SGIKAGVAAGLPVVGLTTR-NPEHV-LLEANPTFL 224 (246)
Q Consensus 161 ~~~kp~~~~~~~~~~~~--------~~-----~~~~~~~igD~~-~Di~~a~~~G~~~i~v~~~-~~~~~-~~~~~~~~~ 224 (246)
..+||++.+|+.+++.+ +. ++++++||||++ +|+.+|+++|+.+++|.+| +...+ .....|+++
T Consensus 230 ~~GKP~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~mIGD~~~tDI~ga~~~G~~silV~tG~~~~~~~~~~~~p~~v 309 (321)
T TIGR01456 230 TLGKPTKLTYDFAEDVLIDWEKRLSGTKPSTSPFHALYMVGDNPASDIIGAQNYGWFSCLVKTGVYNGGDDLKECKPTLI 309 (321)
T ss_pred EcCCCChHHHHHHHHHHHHHHhhhccccccCCChheEEEEcCChhhhhhhHHhCCceEEEecccccCCCCCCCCCCCCEE
Confidence 35999999999988877 43 447999999999 9999999999999999988 33322 223468999
Q ss_pred ecCCCC
Q 025896 225 IKDYDD 230 (246)
Q Consensus 225 i~~~~e 230 (246)
++++.|
T Consensus 310 v~~l~e 315 (321)
T TIGR01456 310 VNDVFD 315 (321)
T ss_pred ECCHHH
Confidence 999998
No 122
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=99.35 E-value=2.6e-13 Score=104.66 Aligned_cols=73 Identities=19% Similarity=0.167 Sum_probs=58.9
Q ss_pred CCCCCChHHHHHHHHHcCCCCCcEEEEecChhhhHHHHhcCCCEEEEcCCCChhhhhccCCcEEecCCCChhhHHHH
Q 025896 161 ERAKPFPDPYFKALEMLKVSKDHTFVFEDSVSGIKAGVAAGLPVVGLTTRNPEHVLLEANPTFLIKDYDDPKLWSAL 237 (246)
Q Consensus 161 ~~~kp~~~~~~~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i~~~~el~~~~~l 237 (246)
.....+..+++.+++.+|++++++++|||+.||++|.+.+|.++++- +..+.....+++++.+..+-++...|
T Consensus 182 ~~~vsK~~ai~~l~~~~~i~~~~~~~~GD~~ND~~Ml~~~~~~~am~----na~~~~k~~a~~i~~~~~~~gv~~~i 254 (254)
T PF08282_consen 182 PKGVSKGSAIKYLLEYLGISPEDIIAFGDSENDIEMLELAGYSVAMG----NATPELKKAADYITPSNNDDGVAKAI 254 (254)
T ss_dssp ETTSSHHHHHHHHHHHHTTSGGGEEEEESSGGGHHHHHHSSEEEEET----TS-HHHHHHSSEEESSGTCTHHHHHH
T ss_pred eCCCCHHHHHHHHhhhcccccceeEEeecccccHhHHhhcCeEEEEc----CCCHHHHHhCCEEecCCCCChHHHhC
Confidence 44566788999999999999999999999999999999999875555 34444556888999988886666543
No 123
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=99.34 E-value=1.2e-11 Score=88.08 Aligned_cols=93 Identities=25% Similarity=0.311 Sum_probs=68.2
Q ss_pred cccHHHHHHHHHHcCCeEEEEeCCC---H-----------HHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHH
Q 025896 110 ISGLDKVKKWIEDRGLKRAAVTNAP---R-----------ENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALE 175 (246)
Q Consensus 110 ~~~~~~~l~~l~~~g~~i~i~s~~~---~-----------~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~ 175 (246)
.+++.+.|++|++.|+.|+|+||-. . ..+..+++.+++. +..++.......+||++.+++.+++
T Consensus 31 ~~~v~~~L~~l~~~Gy~IvIvTNQ~gi~~~~~~~~~~~~~~ki~~il~~l~ip--~~~~~a~~~d~~RKP~~GM~~~~~~ 108 (159)
T PF08645_consen 31 PPGVPEALRELHKKGYKIVIVTNQSGIGRGMGEKDLENFHEKIENILKELGIP--IQVYAAPHKDPCRKPNPGMWEFALK 108 (159)
T ss_dssp -TTHHHHHHHHHHTTEEEEEEEE-CCCCCTBTCCHHHHHHHHHHHHHHHCTS---EEEEECGCSSTTSTTSSHHHHHHCC
T ss_pred chhHHHHHHHHHhcCCeEEEEeCccccccccccchHHHHHHHHHHHHHHcCCc--eEEEecCCCCCCCCCchhHHHHHHH
Confidence 4579999999999999999999851 1 2345566677765 4444444445789999999999999
Q ss_pred HcCC----CCCcEEEEecC-----------hhhhHHHHhcCCCE
Q 025896 176 MLKV----SKDHTFVFEDS-----------VSGIKAGVAAGLPV 204 (246)
Q Consensus 176 ~~~~----~~~~~~~igD~-----------~~Di~~a~~~G~~~ 204 (246)
+++. +.++++||||. ..|..-|.++|+++
T Consensus 109 ~~~~~~~id~~~Sf~VGDaagr~~~~~d~s~~D~~fA~N~gi~f 152 (159)
T PF08645_consen 109 DYNDGVEIDLANSFYVGDAAGRSKKKKDFSDSDRKFALNCGIKF 152 (159)
T ss_dssp CTSTT--S-CCC-EEEESSCHCTB-S--S--HHHHHHHHHT--E
T ss_pred hccccccccccceEEEeccCCCCCcccccChhHHHHHHHcCCcc
Confidence 9864 88999999996 57899999999874
No 124
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=99.34 E-value=1.3e-12 Score=99.63 Aligned_cols=50 Identities=24% Similarity=0.349 Sum_probs=46.0
Q ss_pred CCCCCChHHHHHHHHHcCCCCCcE-EEEecCh-hhhHHHHhcCCCEEEEcCC
Q 025896 161 ERAKPFPDPYFKALEMLKVSKDHT-FVFEDSV-SGIKAGVAAGLPVVGLTTR 210 (246)
Q Consensus 161 ~~~kp~~~~~~~~~~~~~~~~~~~-~~igD~~-~Di~~a~~~G~~~i~v~~~ 210 (246)
..+||++..|+.++++++++++++ +||||+. +|+.+|+++|+.++++.+|
T Consensus 185 ~~~KP~~~~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~~G~~~i~v~~G 236 (236)
T TIGR01460 185 VVGKPSPAIYRAALNLLQARPERRDVMVGDNLRTDILGAKNAGFDTLLVLTG 236 (236)
T ss_pred eecCCCHHHHHHHHHHhCCCCccceEEECCCcHHHHHHHHHCCCcEEEEecC
Confidence 367999999999999999998887 9999999 8999999999999999654
No 125
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=99.34 E-value=9.3e-13 Score=100.91 Aligned_cols=98 Identities=19% Similarity=0.269 Sum_probs=81.5
Q ss_pred cccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEE--EecCCCCCCCCChHHHHHHHHHcCCC-CCcEEE
Q 025896 110 ISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVV--ILGDECERAKPFPDPYFKALEMLKVS-KDHTFV 186 (246)
Q Consensus 110 ~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~--~~~~~~~~~kp~~~~~~~~~~~~~~~-~~~~~~ 186 (246)
++++.++++.|+++|+++ |+||.+.......+...+...+|..+ .+.+....+||+|..|+.++++++.. +++++|
T Consensus 140 ~~~~~~~l~~l~~~g~~~-i~tN~d~~~~~~~~~~~~~g~~~~~i~~~g~~~~~~gKP~~~~~~~~~~~~~~~~~~~~~~ 218 (242)
T TIGR01459 140 LDEFDELFAPIVARKIPN-ICANPDRGINQHGIYRYGAGYYAELIKQLGGKVIYSGKPYPAIFHKALKECSNIPKNRMLM 218 (242)
T ss_pred HHHHHHHHHHHHhCCCcE-EEECCCEeccCCCceEecccHHHHHHHHhCCcEecCCCCCHHHHHHHHHHcCCCCcccEEE
Confidence 688899999998899997 88999877766666666766666644 44555568999999999999999875 578999
Q ss_pred EecCh-hhhHHHHhcCCCEEEEc
Q 025896 187 FEDSV-SGIKAGVAAGLPVVGLT 208 (246)
Q Consensus 187 igD~~-~Di~~a~~~G~~~i~v~ 208 (246)
|||+. +|+.+|+++|+.+++|.
T Consensus 219 vGD~~~~Di~~a~~~G~~~i~v~ 241 (242)
T TIGR01459 219 VGDSFYTDILGANRLGIDTALVL 241 (242)
T ss_pred ECCCcHHHHHHHHHCCCeEEEEe
Confidence 99995 99999999999999984
No 126
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=99.31 E-value=4.6e-11 Score=92.03 Aligned_cols=112 Identities=14% Similarity=0.126 Sum_probs=75.4
Q ss_pred CeEEEEeCCCH-----HHHHHHHHhcCCCCcceEEEec----CCCCCCCCChHHHHHHHHHcCCCCCcEEEEecChhhhH
Q 025896 125 LKRAAVTNAPR-----ENAELMISKLGLSDFFQVVILG----DECERAKPFPDPYFKALEMLKVSKDHTFVFEDSVSGIK 195 (246)
Q Consensus 125 ~~i~i~s~~~~-----~~~~~~l~~~~l~~~f~~~~~~----~~~~~~kp~~~~~~~~~~~~~~~~~~~~~igD~~~Di~ 195 (246)
+++.++..... ..+...+...++. +..++++ +......++..+++.+++.++++++++++|||+.||++
T Consensus 120 ~k~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~~~~ldi~~~~~~K~~al~~l~~~~~i~~~~~i~~GD~~ND~~ 197 (249)
T TIGR01485 120 HKVSFFLDPEAAPEVIKQLTEMLKETGLD--VKLIYSSGKDLDILPQGSGKGQALQYLLQKLAMEPSQTLVCGDSGNDIE 197 (249)
T ss_pred eeEEEEechhhhhHHHHHHHHHHHhcCCC--EEEEEECCceEEEEeCCCChHHHHHHHHHHcCCCccCEEEEECChhHHH
Confidence 55666554322 2223444444443 3333433 34467888999999999999999999999999999999
Q ss_pred HHHhcCCCEEEEcCCCChhhhh------ccCCcEEecCCCChhhHHHHhhh
Q 025896 196 AGVAAGLPVVGLTTRNPEHVLL------EANPTFLIKDYDDPKLWSALEEL 240 (246)
Q Consensus 196 ~a~~~G~~~i~v~~~~~~~~~~------~~~~~~~i~~~~el~~~~~l~~~ 240 (246)
|++.++..++.+.+.. .+.. .....++.+...+.++...++.+
T Consensus 198 ml~~~~~~~va~~na~--~~~k~~~~~~~~~~~~~~~~~~~~Gi~e~l~~~ 246 (249)
T TIGR01485 198 LFEIGSVRGVIVSNAQ--EELLQWYDENAKDKIYHASERCAGGIIEAIAHF 246 (249)
T ss_pred HHHccCCcEEEECCCH--HHHHHHHHhcccCcEEEecCCCcHHHHHHHHHc
Confidence 9999766666765442 2222 12234788888888888888765
No 127
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=99.31 E-value=3.8e-11 Score=91.67 Aligned_cols=62 Identities=13% Similarity=0.170 Sum_probs=54.6
Q ss_pred CCCc-ccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCCCCCCChH
Q 025896 107 LKPI-SGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDECERAKPFPD 168 (246)
Q Consensus 107 ~~~~-~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~ 168 (246)
+++. ||+.++|++|+++|++++|+|++.+..+...++++|+..+|+.++++++....+|.++
T Consensus 144 v~irdPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~lGLd~YFdvIIs~Gdv~~~kp~~e 206 (301)
T TIGR01684 144 VRIRDPRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKVKLDRYFDIIISGGHKAEEYSTMS 206 (301)
T ss_pred cccCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCCCcccCEEEECCccccCCCCcc
Confidence 3344 7899999999999999999999999999999999999999999999988777776653
No 128
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=99.28 E-value=1.5e-10 Score=81.13 Aligned_cols=93 Identities=16% Similarity=0.230 Sum_probs=69.4
Q ss_pred hccCCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcc-------eE----------EEecCC--CCCCC
Q 025896 104 SEQLKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFF-------QV----------VILGDE--CERAK 164 (246)
Q Consensus 104 ~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f-------~~----------~~~~~~--~~~~k 164 (246)
...+.+.||..++.+++++++++++|+|++-...+...+++.+-..-. +. +...++ .+..|
T Consensus 69 lk~i~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivgke~i~~idi~sn~~~ih~dg~h~i~~~~ds~fG~dK 148 (220)
T COG4359 69 LKDIKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGKERIYCIDIVSNNDYIHIDGQHSIKYTDDSQFGHDK 148 (220)
T ss_pred HhhcccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhccccceeeeEEeecCceEcCCCceeeecCCccccCCCc
Confidence 356899999999999999999999999999999999999887521111 11 111111 13333
Q ss_pred CChHHHHHHHHHcCCCCCcEEEEecChhhhHHHHhcCC
Q 025896 165 PFPDPYFKALEMLKVSKDHTFVFEDSVSGIKAGVAAGL 202 (246)
Q Consensus 165 p~~~~~~~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~ 202 (246)
| .....+.-+++.++|+||+..|+.+|+...+
T Consensus 149 ~------~vI~~l~e~~e~~fy~GDsvsDlsaaklsDl 180 (220)
T COG4359 149 S------SVIHELSEPNESIFYCGDSVSDLSAAKLSDL 180 (220)
T ss_pred c------hhHHHhhcCCceEEEecCCcccccHhhhhhh
Confidence 3 3556666677889999999999999999885
No 129
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=99.28 E-value=4.1e-11 Score=102.41 Aligned_cols=116 Identities=16% Similarity=0.198 Sum_probs=87.5
Q ss_pred CCCcccHHHHHHHHHHcC-CeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHcCCCCCcEE
Q 025896 107 LKPISGLDKVKKWIEDRG-LKRAAVTNAPRENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEMLKVSKDHTF 185 (246)
Q Consensus 107 ~~~~~~~~~~l~~l~~~g-~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~ 185 (246)
..++||+.++|++|++.| ++++++|+.+....+..++++|+.++|..+. |+-...++++++..+++++
T Consensus 383 d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~~~lgi~~~f~~~~-----------p~~K~~~v~~l~~~~~~v~ 451 (556)
T TIGR01525 383 DQLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAELGIDEVHAELL-----------PEDKLAIVKELQEEGGVVA 451 (556)
T ss_pred ccchHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHHHHhCCCeeeccCC-----------HHHHHHHHHHHHHcCCEEE
Confidence 468999999999999999 9999999999999999999999987776431 1122345555555778999
Q ss_pred EEecChhhhHHHHhcCCCEEEEcCCCChhhhhccCCcEEecCCCChhhHHHH
Q 025896 186 VFEDSVSGIKAGVAAGLPVVGLTTRNPEHVLLEANPTFLIKDYDDPKLWSAL 237 (246)
Q Consensus 186 ~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i~~~~el~~~~~l 237 (246)
||||+.||+.+++.+|+ .+..++ ..+.....+|+++.+-+-..+..++
T Consensus 452 ~vGDg~nD~~al~~A~v---gia~g~-~~~~~~~~Ad~vi~~~~~~~l~~~i 499 (556)
T TIGR01525 452 MVGDGINDAPALAAADV---GIAMGA-GSDVAIEAADIVLLNDDLSSLPTAI 499 (556)
T ss_pred EEECChhHHHHHhhCCE---eEEeCC-CCHHHHHhCCEEEeCCCHHHHHHHH
Confidence 99999999999999994 444443 3344446799999853322244443
No 130
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=99.27 E-value=5e-12 Score=95.68 Aligned_cols=68 Identities=13% Similarity=0.067 Sum_probs=49.3
Q ss_pred CCHHHHHHHHHhcCCC----CcceEEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEEEecChhhhHHHHhcCCCEE
Q 025896 133 APRENAELMISKLGLS----DFFQVVILGDECERAKPFPDPYFKALEMLKVSKDHTFVFEDSVSGIKAGVAAGLPVV 205 (246)
Q Consensus 133 ~~~~~~~~~l~~~~l~----~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i 205 (246)
.....+...+...++. .+|. +..+.+..++.+++.+++.+|++++++++|||+.||++|++.+|.+++
T Consensus 148 ~~~~~~~~~l~~~~~~~~~~~~~~-----ei~~~~~~Kg~al~~l~~~lgi~~~~vi~~GD~~NDi~ml~~ag~~va 219 (221)
T TIGR02463 148 SRMPRFTALLADLGLAIVQGNRFS-----HVLGASSSKGKAANWLKATYNQPDVKTLGLGDGPNDLPLLEVADYAVV 219 (221)
T ss_pred hHHHHHHHHHHHcCCeEEecCCee-----EEecCCCCHHHHHHHHHHHhCCCCCcEEEECCCHHHHHHHHhCCceEE
Confidence 3334455666665553 2222 222344456778999999999999999999999999999999998754
No 131
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=99.27 E-value=3e-11 Score=102.63 Aligned_cols=111 Identities=15% Similarity=0.221 Sum_probs=88.1
Q ss_pred CCCcccHHHHHHHHHHcCC-eEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHcCCCCCcEE
Q 025896 107 LKPISGLDKVKKWIEDRGL-KRAAVTNAPRENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEMLKVSKDHTF 185 (246)
Q Consensus 107 ~~~~~~~~~~l~~l~~~g~-~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~ 185 (246)
..++||+.+.|++|++.|+ +++++|+.+....+..++++|+.++|..+. | +....++++++...++++
T Consensus 361 d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~lgi~~~f~~~~---------p--~~K~~~i~~l~~~~~~v~ 429 (536)
T TIGR01512 361 DEPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVARELGIDEVHAELL---------P--EDKLEIVKELREKYGPVA 429 (536)
T ss_pred ccchHHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHHcCChhhhhccC---------c--HHHHHHHHHHHhcCCEEE
Confidence 4688999999999999999 999999999999999999999988775331 1 122456666666678999
Q ss_pred EEecChhhhHHHHhcCCCEEEEcCCCChhhhhccCCcEEe--cCCCCh
Q 025896 186 VFEDSVSGIKAGVAAGLPVVGLTTRNPEHVLLEANPTFLI--KDYDDP 231 (246)
Q Consensus 186 ~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i--~~~~el 231 (246)
||||+.||+.+++.+|+ .+..+....+.....+++++ +++.++
T Consensus 430 ~vGDg~nD~~al~~A~v---gia~g~~~~~~~~~~ad~vl~~~~l~~l 474 (536)
T TIGR01512 430 MVGDGINDAPALAAADV---GIAMGASGSDVAIETADVVLLNDDLSRL 474 (536)
T ss_pred EEeCCHHHHHHHHhCCE---EEEeCCCccHHHHHhCCEEEECCCHHHH
Confidence 99999999999999995 55555323444455789998 777774
No 132
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=99.26 E-value=3.7e-12 Score=98.50 Aligned_cols=80 Identities=15% Similarity=0.030 Sum_probs=62.2
Q ss_pred CCCCCChHHHHHHHHHcCCC--CCcEEEEecChhhhHHHHhcCCCEEEEcCCCChhhhhcc--CCcEEecCCCChhhHHH
Q 025896 161 ERAKPFPDPYFKALEMLKVS--KDHTFVFEDSVSGIKAGVAAGLPVVGLTTRNPEHVLLEA--NPTFLIKDYDDPKLWSA 236 (246)
Q Consensus 161 ~~~kp~~~~~~~~~~~~~~~--~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~--~~~~~i~~~~el~~~~~ 236 (246)
.....+...++.+++.++++ .+++++|||+.||++|++.+|.++++-+.....++.... .++++..+..+-++...
T Consensus 172 ~~~~~Kg~ai~~l~~~~~i~~~~~~~~a~GD~~ND~~Ml~~ag~~vam~Na~~~~~~lk~~~~a~~~vt~~~~~dGva~~ 251 (256)
T TIGR01486 172 GAGSDKGKAANALKQFYNQPGGAIKVVGLGDSPNDLPLLEVVDLAVVVPGPNGPNVSLKPGDPGSFLLTPAPGPEGWREA 251 (256)
T ss_pred cCCCCHHHHHHHHHHHHhhcCCCceEEEEcCCHhhHHHHHHCCEEEEeCCCCCCccccCccCCCcEEEcCCCCcHHHHHH
Confidence 45667788899999999999 999999999999999999999877766322111233332 24589989999999888
Q ss_pred Hhhh
Q 025896 237 LEEL 240 (246)
Q Consensus 237 l~~~ 240 (246)
++.+
T Consensus 252 l~~~ 255 (256)
T TIGR01486 252 LEHL 255 (256)
T ss_pred HHHh
Confidence 8764
No 133
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=99.22 E-value=1.3e-11 Score=88.14 Aligned_cols=70 Identities=19% Similarity=0.248 Sum_probs=60.5
Q ss_pred CCCCCChHHHHHHHHHcCCCCCcEEEEecCh-hhhHHHHhcCCCEEEEcCC-CCh--hhhhccCCcEEecCCCC
Q 025896 161 ERAKPFPDPYFKALEMLKVSKDHTFVFEDSV-SGIKAGVAAGLPVVGLTTR-NPE--HVLLEANPTFLIKDYDD 230 (246)
Q Consensus 161 ~~~kp~~~~~~~~~~~~~~~~~~~~~igD~~-~Di~~a~~~G~~~i~v~~~-~~~--~~~~~~~~~~~i~~~~e 230 (246)
..+||++.+|+..++.+|++|++++||||.. .|+-.|+.+||..|.|.+| +.+ .+-....|+..++++.|
T Consensus 178 vvGKP~~~fFe~al~~~gv~p~~aVMIGDD~~dDvgGAq~~GMrgilVkTGK~rpsDe~k~~~~p~~~~d~f~~ 251 (262)
T KOG3040|consen 178 VVGKPSPFFFESALQALGVDPEEAVMIGDDLNDDVGGAQACGMRGILVKTGKFRPSDEEKPPVPPDLTADNFAD 251 (262)
T ss_pred EecCCCHHHHHHHHHhcCCChHHheEEccccccchhhHhhhcceeEEeeccccCCcccccCCCCcchhhhhHHH
Confidence 4689999999999999999999999999999 6999999999999999998 333 33344577888888887
No 134
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=99.20 E-value=2.5e-11 Score=86.87 Aligned_cols=100 Identities=11% Similarity=0.148 Sum_probs=87.0
Q ss_pred cCCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCC-cceEEEecCCCCCCCCChHHHHHHHHHcCCCCCcE
Q 025896 106 QLKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSD-FFQVVILGDECERAKPFPDPYFKALEMLKVSKDHT 184 (246)
Q Consensus 106 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~-~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~ 184 (246)
.+...||+.++|++|++. +.++|.|++...+++.+++.++... +|+.++..+.....+++ +.+.++.+|.+++++
T Consensus 40 ~v~~RPgl~eFL~~l~~~-yei~I~Ts~~~~yA~~il~~ldp~~~~f~~~l~r~~~~~~~~~---~~K~L~~l~~~~~~v 115 (162)
T TIGR02251 40 YVFKRPHVDEFLERVSKW-YELVIFTASLEEYADPVLDILDRGGKVISRRLYRESCVFTNGK---YVKDLSLVGKDLSKV 115 (162)
T ss_pred EEEECCCHHHHHHHHHhc-CEEEEEcCCcHHHHHHHHHHHCcCCCEEeEEEEccccEEeCCC---EEeEchhcCCChhhE
Confidence 467899999999999988 9999999999999999999999875 88988888776555554 567788889999999
Q ss_pred EEEecChhhhHHHHhcCCCEEEEcC
Q 025896 185 FVFEDSVSGIKAGVAAGLPVVGLTT 209 (246)
Q Consensus 185 ~~igD~~~Di~~a~~~G~~~i~v~~ 209 (246)
++|||+..++.++...|+.+.....
T Consensus 116 IiVDD~~~~~~~~~~NgI~i~~f~~ 140 (162)
T TIGR02251 116 IIIDNSPYSYSLQPDNAIPIKSWFG 140 (162)
T ss_pred EEEeCChhhhccCccCEeecCCCCC
Confidence 9999999999999999988766653
No 135
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=99.10 E-value=5.2e-10 Score=100.33 Aligned_cols=120 Identities=16% Similarity=0.245 Sum_probs=94.5
Q ss_pred CCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCC----------------CCCCChHHHH
Q 025896 108 KPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDECE----------------RAKPFPDPYF 171 (246)
Q Consensus 108 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~----------------~~kp~~~~~~ 171 (246)
+++|++.+.++.|++.|++++++|+.+...+....+.+|+...++.++++.+.. ...+.|+-..
T Consensus 528 p~r~~~~~~i~~l~~~Gi~v~miTGD~~~tA~~ia~~~Gi~~~~~~~v~g~~l~~~~~~~l~~~~~~~~Vfar~~P~~K~ 607 (884)
T TIGR01522 528 PPRPGVKEAVTTLITGGVRIIMITGDSQETAVSIARRLGMPSKTSQSVSGEKLDAMDDQQLSQIVPKVAVFARASPEHKM 607 (884)
T ss_pred cchhHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCCCCceeEhHHhHhCCHHHHHHHhhcCeEEEECCHHHHH
Confidence 678999999999999999999999999999999999999987666555543321 2235566667
Q ss_pred HHHHHcCCCCCcEEEEecChhhhHHHHhcCCCEEEEcCCCChhhhhccCCcEEe--cCCCC
Q 025896 172 KALEMLKVSKDHTFVFEDSVSGIKAGVAAGLPVVGLTTRNPEHVLLEANPTFLI--KDYDD 230 (246)
Q Consensus 172 ~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i--~~~~e 230 (246)
.+.+.++...+.++|+||+.||..+++.|++. +..|....+.....+|+++ +++..
T Consensus 608 ~iv~~lq~~g~~v~mvGDGvND~pAl~~AdVG---ia~g~~g~~va~~aaDivl~dd~~~~ 665 (884)
T TIGR01522 608 KIVKALQKRGDVVAMTGDGVNDAPALKLADIG---VAMGQTGTDVAKEAADMILTDDDFAT 665 (884)
T ss_pred HHHHHHHHCCCEEEEECCCcccHHHHHhCCee---EecCCCcCHHHHHhcCEEEcCCCHHH
Confidence 77777777778899999999999999999964 4444334455556889999 45666
No 136
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=99.09 E-value=1.4e-09 Score=83.31 Aligned_cols=85 Identities=15% Similarity=0.145 Sum_probs=66.8
Q ss_pred ccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCCC----------------------------
Q 025896 111 SGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDECER---------------------------- 162 (246)
Q Consensus 111 ~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~---------------------------- 162 (246)
|++.++|++|++.|++++|+|+++...+...++.+|+..+|+.+++++....
T Consensus 151 p~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~lgL~~yFDvII~~g~i~~k~~~~~~~d~~~~~~~~~~~f~~d~~~~ 230 (303)
T PHA03398 151 PFVYDSLDELKERGCVLVLWSYGNREHVVHSLKETKLEGYFDIIICGGRKAGEYSRRVIVDNKYKMVFVKKPFYLDVTDV 230 (303)
T ss_pred hhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHcCCCccccEEEECCCcccccccceeecccceeEEecCceeEeCCcc
Confidence 7788999999999999999999999999999999999999998887754211
Q ss_pred -CCC-ChHHHHHHHHHcCCCCCc-EEEEecCh-hhhH
Q 025896 163 -AKP-FPDPYFKALEMLKVSKDH-TFVFEDSV-SGIK 195 (246)
Q Consensus 163 -~kp-~~~~~~~~~~~~~~~~~~-~~~igD~~-~Di~ 195 (246)
..| .|......+++.|+..-. +..|+|-. ||+.
T Consensus 231 ~~lPKSprvVl~yL~~~gvn~~KtiTLVDDl~~Nn~~ 267 (303)
T PHA03398 231 KNLPKSPRVVLWYLRKKGVNYFKTITLVDDLKSNNYS 267 (303)
T ss_pred cCCCCCCeehHHHHHHcCcceeccEEEeccCcccCcc
Confidence 122 256677888888887644 45677766 6653
No 137
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=99.08 E-value=1.1e-09 Score=93.64 Aligned_cols=108 Identities=15% Similarity=0.181 Sum_probs=81.2
Q ss_pred CCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEE
Q 025896 107 LKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEMLKVSKDHTFV 186 (246)
Q Consensus 107 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~ 186 (246)
..++||+.+++++|++.|++++++|+.+....+..++++|+. +|. +. +| +.....+++++.++++++|
T Consensus 404 d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~lgi~-~~~-----~~----~p--~~K~~~v~~l~~~~~~v~~ 471 (562)
T TIGR01511 404 DQLRPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKELGIN-VRA-----EV----LP--DDKAALIKELQEKGRVVAM 471 (562)
T ss_pred ccccHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHcCCc-EEc-----cC----Ch--HHHHHHHHHHHHcCCEEEE
Confidence 457899999999999999999999999999999999999995 221 11 12 2223445555557789999
Q ss_pred EecChhhhHHHHhcCCCEEEEcCCCChhhhhccCCcEEec--CCCC
Q 025896 187 FEDSVSGIKAGVAAGLPVVGLTTRNPEHVLLEANPTFLIK--DYDD 230 (246)
Q Consensus 187 igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i~--~~~e 230 (246)
|||+.||+.+++.+|+. +..++. .+.....+|+++. ++.+
T Consensus 472 VGDg~nD~~al~~A~vg---ia~g~g-~~~a~~~Advvl~~~~l~~ 513 (562)
T TIGR01511 472 VGDGINDAPALAQADVG---IAIGAG-TDVAIEAADVVLMRNDLND 513 (562)
T ss_pred EeCCCccHHHHhhCCEE---EEeCCc-CHHHHhhCCEEEeCCCHHH
Confidence 99999999999999964 333332 3444557899885 5555
No 138
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=99.04 E-value=2.4e-09 Score=79.10 Aligned_cols=103 Identities=17% Similarity=0.300 Sum_probs=64.6
Q ss_pred ccCCCcccHHHHHHHHHHcCCeEEEEeCCCHH-------HHHHHHHhc-CCCCcceEEEecCCCCCCCCChHHHHHHHHH
Q 025896 105 EQLKPISGLDKVKKWIEDRGLKRAAVTNAPRE-------NAELMISKL-GLSDFFQVVILGDECERAKPFPDPYFKALEM 176 (246)
Q Consensus 105 ~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~-------~~~~~l~~~-~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~ 176 (246)
...+|.||+.++|++|++.|..++++|+.+.. .....+++. +... ++.++.+.. |. .
T Consensus 70 ~~l~p~~gA~e~l~~L~~~g~~~~~Itar~~~~~~~~~~~k~~Wl~~hf~~i~-~~~~~~~~~----K~----------~ 134 (191)
T PF06941_consen 70 SNLPPIPGAVEALKKLRDKGHEIVIITARPPEFPDHSAEEKREWLERHFPFIP-YDNLIFTGD----KT----------L 134 (191)
T ss_dssp TT--B-TTHHHHHHHHHTSTTEEEEEEE-SSSSGCCCHHHHHHHHHHHHTHHH-HCCEEEESS----GG----------G
T ss_pred cCCCccHHHHHHHHHHHHcCCcEEEEEecCccccchHHHHHHHHHHHHcCCCc-hheEEEecC----CC----------e
Confidence 46789999999999999999777777766432 334455543 3222 233443321 11 1
Q ss_pred cCCCCCcEEEEecChhhhHHHHhcCCCEEEEcCCCChhhhhccCCcEEecCCCC
Q 025896 177 LKVSKDHTFVFEDSVSGIKAGVAAGLPVVGLTTRNPEHVLLEANPTFLIKDYDD 230 (246)
Q Consensus 177 ~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i~~~~e 230 (246)
++. =++|+|++..+..+...|++++++..++++... ....+.++.|
T Consensus 135 v~~----DvlIDD~~~n~~~~~~~g~~~iLfd~p~Nr~~~----~~~Rv~~W~e 180 (191)
T PF06941_consen 135 VGG----DVLIDDRPHNLEQFANAGIPVILFDQPYNRDES----NFPRVNNWEE 180 (191)
T ss_dssp C------SEEEESSSHHHSS-SSESSEEEEE--GGGTT------TSEEE-STTS
T ss_pred Eec----cEEecCChHHHHhccCCCceEEEEcCCCCCCCC----CCccCCCHHH
Confidence 111 289999999999999999999999988777543 5689999999
No 139
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=99.03 E-value=3.4e-09 Score=70.17 Aligned_cols=121 Identities=15% Similarity=0.174 Sum_probs=97.4
Q ss_pred cCCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHcCCCCCcEE
Q 025896 106 QLKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEMLKVSKDHTF 185 (246)
Q Consensus 106 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~ 185 (246)
.-++|+.+.+.+++|++. +.++|.|+.-...+...++..|+. .+.++ .-.++.....++++++-+.+.|+
T Consensus 28 gGklf~ev~e~iqeL~d~-V~i~IASgDr~gsl~~lae~~gi~--~~rv~-------a~a~~e~K~~ii~eLkk~~~k~v 97 (152)
T COG4087 28 GGKLFSEVSETIQELHDM-VDIYIASGDRKGSLVQLAEFVGIP--VERVF-------AGADPEMKAKIIRELKKRYEKVV 97 (152)
T ss_pred CcEEcHhhHHHHHHHHHh-heEEEecCCcchHHHHHHHHcCCc--eeeee-------cccCHHHHHHHHHHhcCCCcEEE
Confidence 457899999999999999 999999999888999988888876 33332 22356677889999988779999
Q ss_pred EEecChhhhHHHHhcCCCEEEEcCCCChhhhhccCCcEEecCCCChhhHHHHhh
Q 025896 186 VFEDSVSGIKAGVAAGLPVVGLTTRNPEHVLLEANPTFLIKDYDDPKLWSALEE 239 (246)
Q Consensus 186 ~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i~~~~el~~~~~l~~ 239 (246)
+|||+.||+.+.+++.+..+-+..++..+... ..+|++++++.| .+.++..
T Consensus 98 mVGnGaND~laLr~ADlGI~tiq~e~v~~r~l-~~ADvvik~i~e--~ldl~~~ 148 (152)
T COG4087 98 MVGNGANDILALREADLGICTIQQEGVPERLL-LTADVVLKEIAE--ILDLLKD 148 (152)
T ss_pred EecCCcchHHHhhhcccceEEeccCCcchHHH-hhchhhhhhHHH--HHHHhhc
Confidence 99999999999999999888887655444433 478999999998 6665543
No 140
>PRK10671 copA copper exporting ATPase; Provisional
Probab=99.01 E-value=2.9e-09 Score=95.23 Aligned_cols=113 Identities=14% Similarity=0.160 Sum_probs=84.9
Q ss_pred CCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEEE
Q 025896 108 KPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEMLKVSKDHTFVF 187 (246)
Q Consensus 108 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~i 187 (246)
+++|++.+.|++|++.|++++++|+.+....+..++++|+.++|..+ .|+....++++++..+++++||
T Consensus 650 ~~r~~a~~~i~~L~~~gi~v~~~Tgd~~~~a~~ia~~lgi~~~~~~~-----------~p~~K~~~i~~l~~~~~~v~~v 718 (834)
T PRK10671 650 PLRSDSVAALQRLHKAGYRLVMLTGDNPTTANAIAKEAGIDEVIAGV-----------LPDGKAEAIKRLQSQGRQVAMV 718 (834)
T ss_pred cchhhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCCEEEeCC-----------CHHHHHHHHHHHhhcCCEEEEE
Confidence 57899999999999999999999999999999999999998655432 1333456777888888999999
Q ss_pred ecChhhhHHHHhcCCCEEEEcCCCChhhhhccCCcEEe--cCCCChhhHHHH
Q 025896 188 EDSVSGIKAGVAAGLPVVGLTTRNPEHVLLEANPTFLI--KDYDDPKLWSAL 237 (246)
Q Consensus 188 gD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i--~~~~el~~~~~l 237 (246)
||+.||+.+++.+|+.. ..++..+. ....+|+++ +++.+ +..++
T Consensus 719 GDg~nD~~al~~Agvgi---a~g~g~~~-a~~~ad~vl~~~~~~~--i~~~i 764 (834)
T PRK10671 719 GDGINDAPALAQADVGI---AMGGGSDV-AIETAAITLMRHSLMG--VADAL 764 (834)
T ss_pred eCCHHHHHHHHhCCeeE---EecCCCHH-HHHhCCEEEecCCHHH--HHHHH
Confidence 99999999999999843 33332222 223455554 45555 44444
No 141
>COG4996 Predicted phosphatase [General function prediction only]
Probab=99.01 E-value=2e-09 Score=71.13 Aligned_cols=87 Identities=14% Similarity=0.284 Sum_probs=70.1
Q ss_pred cCCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHH---HHHHHc-----
Q 025896 106 QLKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDECERAKPFPDPYF---KALEML----- 177 (246)
Q Consensus 106 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~---~~~~~~----- 177 (246)
.+.++|.+.+++.++|..|+-+...|=+....+-+.|+.+++.++|+-++ .+|+|.-++ +++.++
T Consensus 39 ev~L~~~v~~~l~warnsG~i~~~~sWN~~~kA~~aLral~~~~yFhy~V-------iePhP~K~~ML~~llr~i~~er~ 111 (164)
T COG4996 39 EVHLFPDVKETLKWARNSGYILGLASWNFEDKAIKALRALDLLQYFHYIV-------IEPHPYKFLMLSQLLREINTERN 111 (164)
T ss_pred EEEEcHHHHHHHHHHHhCCcEEEEeecCchHHHHHHHHHhchhhhEEEEE-------ecCCChhHHHHHHHHHHHHHhhc
Confidence 47899999999999999999999999998889999999999999999765 445554333 444443
Q ss_pred -CCCCCcEEEEecChhhhHHHHh
Q 025896 178 -KVSKDHTFVFEDSVSGIKAGVA 199 (246)
Q Consensus 178 -~~~~~~~~~igD~~~Di~~a~~ 199 (246)
.++|.+++|++|..-.+.-.+.
T Consensus 112 ~~ikP~~Ivy~DDR~iH~~~Iwe 134 (164)
T COG4996 112 QKIKPSEIVYLDDRRIHFGNIWE 134 (164)
T ss_pred cccCcceEEEEecccccHHHHHH
Confidence 4689999999999866655544
No 142
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=98.97 E-value=1.8e-09 Score=91.65 Aligned_cols=49 Identities=12% Similarity=0.076 Sum_probs=42.0
Q ss_pred CCCChHHHHHHHHHcCCCCCcEEEE--ecChhhhHHHHhcCCCEEEEcCCC
Q 025896 163 AKPFPDPYFKALEMLKVSKDHTFVF--EDSVSGIKAGVAAGLPVVGLTTRN 211 (246)
Q Consensus 163 ~kp~~~~~~~~~~~~~~~~~~~~~i--gD~~~Di~~a~~~G~~~i~v~~~~ 211 (246)
...|..+++.+++.++++.++++.| ||+.||++|.+.+|.++++-...+
T Consensus 611 gvdKG~AL~~L~e~~gI~~~eViafalGDs~NDisMLe~Ag~gVAM~~~~~ 661 (694)
T PRK14502 611 GNDKGKAIKILNELFRLNFGNIHTFGLGDSENDYSMLETVDSPILVQRPGN 661 (694)
T ss_pred CCCHHHHHHHHHHHhCCCccceEEEEcCCcHhhHHHHHhCCceEEEcCCCC
Confidence 5667889999999999999999988 999999999999999877644333
No 143
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=98.96 E-value=6.7e-10 Score=83.99 Aligned_cols=43 Identities=12% Similarity=0.072 Sum_probs=36.2
Q ss_pred CCCChHHHHHHHHHcCC--CCCcEEEEecChhhhHHHHhcCCCEE
Q 025896 163 AKPFPDPYFKALEMLKV--SKDHTFVFEDSVSGIKAGVAAGLPVV 205 (246)
Q Consensus 163 ~kp~~~~~~~~~~~~~~--~~~~~~~igD~~~Di~~a~~~G~~~i 205 (246)
...++.+++.+++.+++ +++++++|||+.||+.|++.+|++++
T Consensus 179 ~~sK~~al~~l~~~~~~~~~~~~~i~~GD~~nD~~ml~~ag~~v~ 223 (225)
T TIGR02461 179 GSDKGKAIKRLLDLYKLRPGAIESVGLGDSENDFPMFEVVDLAFL 223 (225)
T ss_pred CCCHHHHHHHHHHHhccccCcccEEEEcCCHHHHHHHHhCCCcEe
Confidence 44566788888888866 67789999999999999999998754
No 144
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=98.92 E-value=3.7e-09 Score=82.01 Aligned_cols=71 Identities=14% Similarity=0.204 Sum_probs=54.7
Q ss_pred CCCCCChHHHHHHHHHcCCCCCcEEEEecChhhhHHHHhc----CCCEEEEcCCCChhhhhccCCcEEecCCCChhhHHH
Q 025896 161 ERAKPFPDPYFKALEMLKVSKDHTFVFEDSVSGIKAGVAA----GLPVVGLTTRNPEHVLLEANPTFLIKDYDDPKLWSA 236 (246)
Q Consensus 161 ~~~kp~~~~~~~~~~~~~~~~~~~~~igD~~~Di~~a~~~----G~~~i~v~~~~~~~~~~~~~~~~~i~~~~el~~~~~ 236 (246)
..+..|..+++++++.++++.+++++|||+.||+.|.+.+ |+ .+.+..+ ...|.+.+++..+ +..+
T Consensus 170 p~g~~Kg~al~~ll~~~~~~~~~v~~~GD~~nD~~mf~~~~~~~g~-~vavg~a-------~~~A~~~l~~~~~--v~~~ 239 (266)
T PRK10187 170 PRGTNKGEAIAAFMQEAPFAGRTPVFVGDDLTDEAGFAVVNRLGGI-SVKVGTG-------ATQASWRLAGVPD--VWSW 239 (266)
T ss_pred CCCCCHHHHHHHHHHhcCCCCCeEEEEcCCccHHHHHHHHHhcCCe-EEEECCC-------CCcCeEeCCCHHH--HHHH
Confidence 4455678899999999999999999999999999999988 54 3444221 1357789998888 6666
Q ss_pred Hhhhh
Q 025896 237 LEELD 241 (246)
Q Consensus 237 l~~~~ 241 (246)
|+.+.
T Consensus 240 L~~l~ 244 (266)
T PRK10187 240 LEMIT 244 (266)
T ss_pred HHHHH
Confidence 66554
No 145
>KOG2630 consensus Enolase-phosphatase E-1 [Amino acid transport and metabolism]
Probab=98.90 E-value=1.1e-07 Score=69.35 Aligned_cols=123 Identities=11% Similarity=0.029 Sum_probs=93.6
Q ss_pred CCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcC---CCCcceEEEecCCCCCCCCChHHHHHHHHHcCCCCCc
Q 025896 107 LKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLG---LSDFFQVVILGDECERAKPFPDPYFKALEMLKVSKDH 183 (246)
Q Consensus 107 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~---l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~ 183 (246)
...++++.+.++..+..|++++|+|+++...+...+...+ +..++++.+.. .-..|-....|..+.+.+|.++.+
T Consensus 122 ~~v~aDv~~a~e~w~~~g~~vyIYSSgsv~AqKllfg~s~~gdl~~y~~gyfDt--~iG~K~e~~sy~~I~~~Ig~s~~e 199 (254)
T KOG2630|consen 122 AHVYADVLPAIERWSGEGVRVYIYSSGSVAAQKLLFGYSDAGDLRKYISGYFDT--TIGLKVESQSYKKIGHLIGKSPRE 199 (254)
T ss_pred ccccchhHHHHHHHhhcCceEEEEcCCcHHHHHHHHcccCcchHHHHhhhhhhc--cccceehhHHHHHHHHHhCCChhh
Confidence 4689999999999999999999999998877776665542 33334433322 123556778899999999999999
Q ss_pred EEEEecChhhhHHHHhcCCCEEEEcCCCChhhhh-ccCCcEEecCCCCh
Q 025896 184 TFVFEDSVSGIKAGVAAGLPVVGLTTRNPEHVLL-EANPTFLIKDYDDP 231 (246)
Q Consensus 184 ~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~-~~~~~~~i~~~~el 231 (246)
++|.-|...-..+|+.+|+.+..+.++++..-.. ..-..-++.+|..+
T Consensus 200 iLfLTd~~~Ea~aa~~aGl~a~l~~rPgna~l~dd~~~~y~~i~~F~~l 248 (254)
T KOG2630|consen 200 ILFLTDVPREAAAARKAGLQAGLVSRPGNAPLPDDAKVEYCVIWSFEIL 248 (254)
T ss_pred eEEeccChHHHHHHHhcccceeeeecCCCCCCCcccccceeeeccchhh
Confidence 9999999999999999999999998885443222 12224577787764
No 146
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=98.88 E-value=1.4e-07 Score=70.52 Aligned_cols=101 Identities=14% Similarity=0.009 Sum_probs=64.0
Q ss_pred ccCCCcccHHHHHHHHHHcCCeEEEEeCCCHHH---HHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHcCCCC
Q 025896 105 EQLKPISGLDKVKKWIEDRGLKRAAVTNAPREN---AELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEMLKVSK 181 (246)
Q Consensus 105 ~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~---~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~ 181 (246)
...++.|++.++++.++++|+.|+++|+.+... ....|.+.|+..+ +.++........++.........+++--..
T Consensus 117 ~~apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~~~G~~~~-~~LiLR~~~d~~~~~~~yKs~~R~~l~~~G 195 (229)
T TIGR01675 117 GAAPALPEGLKLYQKIIELGIKIFLLSGRWEELRNATLDNLINAGFTGW-KHLILRGLEDSNKTVVTYKSEVRKSLMEEG 195 (229)
T ss_pred CCCCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHHcCCCCc-CeeeecCCCCCCchHhHHHHHHHHHHHhCC
Confidence 457889999999999999999999999998655 6677888887764 555543322222221111112222221111
Q ss_pred -CcEEEEecChhhhHHHHhcCCCEEEE
Q 025896 182 -DHTFVFEDSVSGIKAGVAAGLPVVGL 207 (246)
Q Consensus 182 -~~~~~igD~~~Di~~a~~~G~~~i~v 207 (246)
.=+..|||..+|+.. ..+|..+.-+
T Consensus 196 YrIv~~iGDq~sDl~G-~~~~~RtFKL 221 (229)
T TIGR01675 196 YRIWGNIGDQWSDLLG-SPPGRRTFKL 221 (229)
T ss_pred ceEEEEECCChHHhcC-CCccCceeeC
Confidence 226789999999955 3455454444
No 147
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=98.87 E-value=1.6e-09 Score=80.89 Aligned_cols=45 Identities=22% Similarity=0.159 Sum_probs=41.7
Q ss_pred CCCCCChHHHHHHHHHcCCCCCcEEEEecChhhhHHHHhcCCCEE
Q 025896 161 ERAKPFPDPYFKALEMLKVSKDHTFVFEDSVSGIKAGVAAGLPVV 205 (246)
Q Consensus 161 ~~~kp~~~~~~~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i 205 (246)
..+.+++.+++.++++++++++++++|||+.||+.|++.+|++++
T Consensus 159 p~~~~K~~~~~~~~~~~~~~~~~~~~~GD~~nD~~~~~~~~~~va 203 (204)
T TIGR01484 159 PAGVDKGSALQALLKELNGKRDEILAFGDSGNDEEMFEVAGLAVA 203 (204)
T ss_pred cCCCChHHHHHHHHHHhCCCHHHEEEEcCCHHHHHHHHHcCCceE
Confidence 567888999999999999999999999999999999999998765
No 148
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=98.86 E-value=2.2e-09 Score=82.40 Aligned_cols=70 Identities=13% Similarity=-0.013 Sum_probs=56.0
Q ss_pred CCChHHHHHHHHHcCCCCCcEEEEecChhhhHHHHhc-------CCCEEEEcCCCChhhhhccCCcEEecCCCChhhHHH
Q 025896 164 KPFPDPYFKALEMLKVSKDHTFVFEDSVSGIKAGVAA-------GLPVVGLTTRNPEHVLLEANPTFLIKDYDDPKLWSA 236 (246)
Q Consensus 164 kp~~~~~~~~~~~~~~~~~~~~~igD~~~Di~~a~~~-------G~~~i~v~~~~~~~~~~~~~~~~~i~~~~el~~~~~ 236 (246)
..|...++.++++++..+.++++|||+.||+.|++.+ |..++.+..+ .....+++++++..+ +..+
T Consensus 166 ~~Kg~a~~~~~~~~~~~~~~~i~iGD~~~D~~~~~~~~~~~~~~g~~~v~v~~g-----~~~~~A~~~~~~~~~--v~~~ 238 (244)
T TIGR00685 166 VNKGEIVKRLLWHQPGSGISPVYLGDDITDEDAFRVVNNQWGNYGFYPVPIGSG-----SKKTVAKFHLTGPQQ--VLEF 238 (244)
T ss_pred CCHHHHHHHHHHhcccCCCceEEEcCCCcHHHHHHHHhcccCCCCeEEEEEecC-----CcCCCceEeCCCHHH--HHHH
Confidence 3356899999999999999999999999999999998 5566667433 233578999999999 6666
Q ss_pred Hhhh
Q 025896 237 LEEL 240 (246)
Q Consensus 237 l~~~ 240 (246)
|+.+
T Consensus 239 L~~l 242 (244)
T TIGR00685 239 LGLL 242 (244)
T ss_pred HHHH
Confidence 6654
No 149
>PLN02382 probable sucrose-phosphatase
Probab=98.80 E-value=4.6e-08 Score=80.40 Aligned_cols=82 Identities=15% Similarity=0.106 Sum_probs=58.5
Q ss_pred CCCCCChHHHHHHHHHc---CCCCCcEEEEecChhhhHHHHhcCCCEEEEcCCCChhhhhc-------cCCcEE-ecCCC
Q 025896 161 ERAKPFPDPYFKALEML---KVSKDHTFVFEDSVSGIKAGVAAGLPVVGLTTRNPEHVLLE-------ANPTFL-IKDYD 229 (246)
Q Consensus 161 ~~~kp~~~~~~~~~~~~---~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~-------~~~~~~-i~~~~ 229 (246)
..+..|..+++.+++++ |++++++++|||+.||++|.+.+|...+.+.+. .++..+ ..++++ .++..
T Consensus 171 p~g~sKg~Al~~L~~~~~~~gi~~~~~iafGDs~NDleMl~~ag~~gvam~NA--~~elk~~a~~~~~~~~~~~~a~~~~ 248 (413)
T PLN02382 171 PQGAGKGQALAYLLKKLKAEGKAPVNTLVCGDSGNDAELFSVPDVYGVMVSNA--QEELLQWYAENAKDNPKIIHATERC 248 (413)
T ss_pred eCCCCHHHHHHHHHHHhhhcCCChhcEEEEeCCHHHHHHHhcCCCCEEEEcCC--cHHHHHHHHhhccCCCcEEEcCCCC
Confidence 45666788999999999 999999999999999999999999533444332 222222 123443 35667
Q ss_pred ChhhHHHHhhhhcCC
Q 025896 230 DPKLWSALEELDKNK 244 (246)
Q Consensus 230 el~~~~~l~~~~~~~ 244 (246)
+-++...++.+.-.|
T Consensus 249 ~~GI~~al~~f~l~~ 263 (413)
T PLN02382 249 AAGIIQAIGHFNLGP 263 (413)
T ss_pred ccHHHHHHHHhCCCC
Confidence 778888887776543
No 150
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=98.78 E-value=1e-07 Score=84.15 Aligned_cols=102 Identities=14% Similarity=0.084 Sum_probs=75.4
Q ss_pred CCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEEE
Q 025896 108 KPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEMLKVSKDHTFVF 187 (246)
Q Consensus 108 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~i 187 (246)
+++|++.+.+++|++.|++++++|+.+....+.+.+++|+..+++ ..| +-...++++++ .+++++||
T Consensus 568 ~~r~~a~~~i~~L~~~gi~~~llTGd~~~~a~~ia~~lgi~~~~~----------~~p--~~K~~~v~~l~-~~~~v~mv 634 (741)
T PRK11033 568 TLRADARQAISELKALGIKGVMLTGDNPRAAAAIAGELGIDFRAG----------LLP--EDKVKAVTELN-QHAPLAMV 634 (741)
T ss_pred CCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCeecC----------CCH--HHHHHHHHHHh-cCCCEEEE
Confidence 688999999999999999999999999999999999999962221 112 22233555555 34689999
Q ss_pred ecChhhhHHHHhcCCCEEEEcCCCChhhhhccCCcEEec
Q 025896 188 EDSVSGIKAGVAAGLPVVGLTTRNPEHVLLEANPTFLIK 226 (246)
Q Consensus 188 gD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i~ 226 (246)
||+.||..+++.+++...+- +.. +.....+|+++-
T Consensus 635 GDgiNDapAl~~A~vgia~g---~~~-~~a~~~adivl~ 669 (741)
T PRK11033 635 GDGINDAPAMKAASIGIAMG---SGT-DVALETADAALT 669 (741)
T ss_pred ECCHHhHHHHHhCCeeEEec---CCC-HHHHHhCCEEEe
Confidence 99999999999999654443 222 222334677664
No 151
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=98.77 E-value=2.9e-07 Score=77.04 Aligned_cols=93 Identities=11% Similarity=-0.046 Sum_probs=58.0
Q ss_pred CcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHh-cCCCCcc--------eEEEecCCCCCC-CCChHHHHHHHHHcC
Q 025896 109 PISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISK-LGLSDFF--------QVVILGDECERA-KPFPDPYFKALEMLK 178 (246)
Q Consensus 109 ~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~-~~l~~~f--------~~~~~~~~~~~~-kp~~~~~~~~~~~~~ 178 (246)
+.+.+.+ .++++|.. +|+|.......+.+++. +|++... ++.+++...+.. .-..+-..++-+.++
T Consensus 111 l~~~a~~---~~~~~g~~-vvVSASp~~~Vepfa~~~LGid~VIgTeLev~~~G~~TG~i~g~~~c~Ge~Kv~rl~~~~g 186 (497)
T PLN02177 111 VHPETWR---VFNSFGKR-YIITASPRIMVEPFVKTFLGADKVLGTELEVSKSGRATGFMKKPGVLVGDHKRDAVLKEFG 186 (497)
T ss_pred cCHHHHH---HHHhCCCE-EEEECCcHHHHHHHHHHcCCCCEEEecccEECcCCEEeeeecCCCCCccHHHHHHHHHHhC
Confidence 4455444 44567754 99999999999999976 7876432 333333322210 111223444545566
Q ss_pred CCCCcEEEEecChhhhHHHHhcCCCEEE
Q 025896 179 VSKDHTFVFEDSVSGIKAGVAAGLPVVG 206 (246)
Q Consensus 179 ~~~~~~~~igD~~~Di~~a~~~G~~~i~ 206 (246)
.+... +++||+.+|..+...++-+.+.
T Consensus 187 ~~~~~-~aYgDS~sD~plL~~a~e~y~V 213 (497)
T PLN02177 187 DALPD-LGLGDRETDHDFMSICKEGYMV 213 (497)
T ss_pred CCCce-EEEECCccHHHHHHhCCccEEe
Confidence 54444 8999999999999999965333
No 152
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=98.74 E-value=8.5e-08 Score=86.61 Aligned_cols=119 Identities=14% Similarity=0.165 Sum_probs=86.6
Q ss_pred CCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCc----ceEEEecCC----------------CCCCCCCh
Q 025896 108 KPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDF----FQVVILGDE----------------CERAKPFP 167 (246)
Q Consensus 108 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~----f~~~~~~~~----------------~~~~kp~~ 167 (246)
++++++.+.++.|++.|++++++|+.+...+..+.+.+|+..- ....+.+.. .-.....|
T Consensus 537 plr~~v~e~I~~l~~aGI~v~miTGD~~~tA~~ia~~~gi~~~~~~v~~~~~~g~~l~~~~~~~~~~~~~~~~v~ar~~P 616 (917)
T TIGR01116 537 PPRPEVADAIEKCRTAGIRVIMITGDNKETAEAICRRIGIFSPDEDVTFKSFTGREFDEMGPAKQRAACRSAVLFSRVEP 616 (917)
T ss_pred CCchhHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHcCCCCCCccccceeeeHHHHhhCCHHHHHHhhhcCeEEEecCH
Confidence 5789999999999999999999999999999999999998531 111222111 11122334
Q ss_pred HHHHHHHHHcCCCCCcEEEEecChhhhHHHHhcCCCEEEEcCCCChhhhhccCCcEEecC--CCC
Q 025896 168 DPYFKALEMLKVSKDHTFVFEDSVSGIKAGVAAGLPVVGLTTRNPEHVLLEANPTFLIKD--YDD 230 (246)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i~~--~~e 230 (246)
+-..++.+.++...+.+.|+||+.||+.|.+.|++...+- .+ .+..+..+|+++.+ +..
T Consensus 617 ~~K~~iV~~lq~~g~~va~iGDG~ND~~alk~AdVGia~g-~g---~~~ak~aAD~vl~dd~f~~ 677 (917)
T TIGR01116 617 SHKSELVELLQEQGEIVAMTGDGVNDAPALKKADIGIAMG-SG---TEVAKEASDMVLADDNFAT 677 (917)
T ss_pred HHHHHHHHHHHhcCCeEEEecCCcchHHHHHhCCeeEECC-CC---cHHHHHhcCeEEccCCHHH
Confidence 5556777777766778889999999999999999854332 22 34445678999987 555
No 153
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=98.71 E-value=6.2e-08 Score=74.34 Aligned_cols=77 Identities=13% Similarity=0.110 Sum_probs=47.3
Q ss_pred CCCCCChHHHHHHHHHcCCCCCcEEEEecChhhhHHHHhcCCCEEEEcCCCCh-----hhhhccC-CcEEecCCCChhhH
Q 025896 161 ERAKPFPDPYFKALEMLKVSKDHTFVFEDSVSGIKAGVAAGLPVVGLTTRNPE-----HVLLEAN-PTFLIKDYDDPKLW 234 (246)
Q Consensus 161 ~~~kp~~~~~~~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~-----~~~~~~~-~~~~i~~~~el~~~ 234 (246)
+..-.|..+++.+++++++++++++++|||.||+.|. ..+...+.|.+.... .+..... .-|........+++
T Consensus 161 P~~a~K~~Al~~L~~~~~~~~~~vl~aGDSgND~~mL-~~~~~~vvV~Na~~e~~~~~~~~~~~~~~iy~a~~~~a~GIl 239 (247)
T PF05116_consen 161 PKGASKGAALRYLMERWGIPPEQVLVAGDSGNDLEML-EGGDHGVVVGNAQPELLSWLLEKLRQQERIYFAQGPYAAGIL 239 (247)
T ss_dssp ETT-SHHHHHHHHHHHHT--GGGEEEEESSGGGHHHH-CCSSEEEE-TTS-HHHHHHHHHCC-TTE--EE-SS-THHHHH
T ss_pred cCCCCHHHHHHHHHHHhCCCHHHEEEEeCCCCcHHHH-cCcCCEEEEcCCCHHHHHHHHHhcccCCceEecCCCCcHHHH
Confidence 4455578899999999999999999999999999999 666677877554322 1111111 22555555555565
Q ss_pred HHHh
Q 025896 235 SALE 238 (246)
Q Consensus 235 ~~l~ 238 (246)
+.++
T Consensus 240 egl~ 243 (247)
T PF05116_consen 240 EGLQ 243 (247)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 154
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=98.68 E-value=2.4e-08 Score=75.47 Aligned_cols=99 Identities=15% Similarity=0.175 Sum_probs=62.4
Q ss_pred cCCCcccHHHHHHHHHHcCCeEEEEeCCCHH---HHHHHHHhcCCCCcceEEEecCCCCCC---C-CChHHHHHHHHH-c
Q 025896 106 QLKPISGLDKVKKWIEDRGLKRAAVTNAPRE---NAELMISKLGLSDFFQVVILGDECERA---K-PFPDPYFKALEM-L 177 (246)
Q Consensus 106 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~---~~~~~l~~~~l~~~f~~~~~~~~~~~~---k-p~~~~~~~~~~~-~ 177 (246)
..++.|++.++++.++++|+.|+++|+++.. .....|.+.|...+-..++........ . -+......+.++ +
T Consensus 113 ~~~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T~~nL~~~G~~~~~~l~lr~~~~~~~~~~~~yK~~~r~~i~~~Gy 192 (229)
T PF03767_consen 113 KAPAIPGALELYNYARSRGVKVFFITGRPESQREATEKNLKKAGFPGWDHLILRPDKDPSKKSAVEYKSERRKEIEKKGY 192 (229)
T ss_dssp GGEEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHHHHHHHHHTTSTBSCGEEEEESSTSS------SHHHHHHHHHTTE
T ss_pred cCcccHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHHHHHHcCCCccchhccccccccccccccccchHHHHHHHHcCC
Confidence 3478899999999999999999999998654 456677788876433333333221111 1 122333334444 3
Q ss_pred CCCCCcEEEEecChhhhHHHHhc---CCCEEEEc
Q 025896 178 KVSKDHTFVFEDSVSGIKAGVAA---GLPVVGLT 208 (246)
Q Consensus 178 ~~~~~~~~~igD~~~Di~~a~~~---G~~~i~v~ 208 (246)
.+ +++|||..+|+..++.. |..++.+.
T Consensus 193 ~I----i~~iGD~~~D~~~~~~~~~~~~r~f~lP 222 (229)
T PF03767_consen 193 RI----IANIGDQLSDFSGAKTAGARAERWFKLP 222 (229)
T ss_dssp EE----EEEEESSGGGCHCTHHHHHHHTTEEE-T
T ss_pred cE----EEEeCCCHHHhhcccccccccceEEEcC
Confidence 33 88999999999995443 33444443
No 155
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=98.68 E-value=5.9e-07 Score=74.00 Aligned_cols=103 Identities=19% Similarity=0.260 Sum_probs=70.5
Q ss_pred CCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhc-C--------CCCcceEEEecCC-----------------CC
Q 025896 108 KPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKL-G--------LSDFFQVVILGDE-----------------CE 161 (246)
Q Consensus 108 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~-~--------l~~~f~~~~~~~~-----------------~~ 161 (246)
...|.+..+|++||++|.++.++||++..+....+..+ | +.++||.|++... .+
T Consensus 183 ~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~dW~dlFDvVIv~A~KP~FF~~~~pfr~vd~~~g 262 (448)
T PF05761_consen 183 HKDPKLPPWLERLRSAGKKLFLITNSPFDYTNAVMSYLLGPFLGEDPDWRDLFDVVIVDARKPGFFTEGRPFREVDTETG 262 (448)
T ss_dssp E--CHHHHHHHHHHCCT-EEEEE-SS-HHHHHHHHHHHCGCCSSTTT-GGGCECEEEES--CCHHHCT---EEEEETTTS
T ss_pred cCCchHHHHHHHHHhcCceEEEecCCCCchhhhhhhhccCCCCCCCCChhhheeEEEEcCCCCcccCCCCceEEEECCCC
Confidence 34678999999999999999999999999888888764 2 4589999887521 01
Q ss_pred C---CC------C----ChHHHHHHHHHcCCCCCcEEEEecCh-hhhHHHHhc-CCCEEEEcCC
Q 025896 162 R---AK------P----FPDPYFKALEMLKVSKDHTFVFEDSV-SGIKAGVAA-GLPVVGLTTR 210 (246)
Q Consensus 162 ~---~k------p----~~~~~~~~~~~~~~~~~~~~~igD~~-~Di~~a~~~-G~~~i~v~~~ 210 (246)
. .+ + .......+.+.+|....++++|||+. .|+...+.. |+.+++|-..
T Consensus 263 ~l~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~g~~VLY~GDhi~~Di~~~k~~~gWrT~~Ii~E 326 (448)
T PF05761_consen 263 KLKWGKYVGPLEKGKVYSGGNWDQLHKLLGWRGKEVLYFGDHIYGDILKSKKRHGWRTAAIIPE 326 (448)
T ss_dssp SEECS---SS--TC-EEEE--HHHHHHHCT--GGGEEEEESSTTTTHHHHHHHH-SEEEEE-TT
T ss_pred ccccccccccccCCCEeecCCHHHHHHHHccCCCeEEEECCchhhhhhhhccccceEEEEEehh
Confidence 1 00 0 01225667778899889999999999 899877776 9999999544
No 156
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=98.68 E-value=1.7e-07 Score=81.02 Aligned_cols=105 Identities=15% Similarity=0.153 Sum_probs=79.8
Q ss_pred CCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEEE
Q 025896 108 KPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEMLKVSKDHTFVF 187 (246)
Q Consensus 108 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~i 187 (246)
++.|++.+.+++|++.|++++++|+.+......+.+.+|+.+++. .. .|+-...+++.+.-..+.+.|+
T Consensus 446 ~~Rp~a~eaI~~l~~~Gi~v~miTGD~~~ta~~iA~~lGI~~v~a---------~~--~PedK~~~v~~lq~~g~~Vamv 514 (675)
T TIGR01497 446 IVKGGIKERFAQLRKMGIKTIMITGDNRLTAAAIAAEAGVDDFIA---------EA--TPEDKIALIRQEQAEGKLVAMT 514 (675)
T ss_pred cchhHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCEEEc---------CC--CHHHHHHHHHHHHHcCCeEEEE
Confidence 578999999999999999999999999999999999999975432 12 3344445555554445679999
Q ss_pred ecChhhhHHHHhcCCCEEEEcCCCChhhhhccCCcEEecC
Q 025896 188 EDSVSGIKAGVAAGLPVVGLTTRNPEHVLLEANPTFLIKD 227 (246)
Q Consensus 188 gD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i~~ 227 (246)
||+.||..+.+.+++..++- .+ .+.....++.++-+
T Consensus 515 GDG~NDapAL~~AdvGiAm~-~g---t~~akeaadivLld 550 (675)
T TIGR01497 515 GDGTNDAPALAQADVGVAMN-SG---TQAAKEAANMVDLD 550 (675)
T ss_pred CCCcchHHHHHhCCEeEEeC-CC---CHHHHHhCCEEECC
Confidence 99999999999999875554 22 33344566777654
No 157
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=98.67 E-value=5.5e-07 Score=64.06 Aligned_cols=93 Identities=19% Similarity=0.244 Sum_probs=58.3
Q ss_pred CcccHHHHHHHHHHcCCeEEEEeCCCHHHH---HHHHHhc-----CCCCcceEEEecCCC---------CCCCC---ChH
Q 025896 109 PISGLDKVKKWIEDRGLKRAAVTNAPRENA---ELMISKL-----GLSDFFQVVILGDEC---------ERAKP---FPD 168 (246)
Q Consensus 109 ~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~---~~~l~~~-----~l~~~f~~~~~~~~~---------~~~kp---~~~ 168 (246)
..|++.+++++++++|++++++|+++.... +..+..+ ++.. ..++.+... -..+| +.+
T Consensus 28 ~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~~~~~~~~~lp~--g~li~~~g~~~~~~~~e~i~~~~~~~K~~ 105 (157)
T smart00775 28 THPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLSQIKQDGHNLPH--GPVLLSPDRLFAALHREVISKKPEVFKIA 105 (157)
T ss_pred CCHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHHHhhhccccCCC--ceEEEcCCcchhhhhcccccCCHHHHHHH
Confidence 358899999999999999999999987665 4666662 2321 123332221 11222 223
Q ss_pred HHHHHHHHcCCCCCc-EEEEecChhhhHHHHhcCCC
Q 025896 169 PYFKALEMLKVSKDH-TFVFEDSVSGIKAGVAAGLP 203 (246)
Q Consensus 169 ~~~~~~~~~~~~~~~-~~~igD~~~Di~~a~~~G~~ 203 (246)
.+..+.+.+.-.... ++.+||+.+|+.+=+++|++
T Consensus 106 ~l~~i~~~~~~~~~~f~~~~gn~~~D~~~y~~~gi~ 141 (157)
T smart00775 106 CLRDIKSLFPPQGNPFYAGFGNRITDVISYSAVGIP 141 (157)
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCchhHHHHHHcCCC
Confidence 344444433211222 34588889999999999996
No 158
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=98.66 E-value=2.6e-07 Score=79.94 Aligned_cols=105 Identities=11% Similarity=0.101 Sum_probs=82.5
Q ss_pred CCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEEE
Q 025896 108 KPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEMLKVSKDHTFVF 187 (246)
Q Consensus 108 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~i 187 (246)
++.|++.+.+++||+.|+++.++|+.+...+..+.+.+|+.++|. .-.|+-..++.+.++-+-+.+.|+
T Consensus 441 p~R~~a~e~I~~Lr~~GI~vvMiTGDn~~TA~aIA~elGI~~v~A-----------~~~PedK~~iV~~lQ~~G~~VaMt 509 (673)
T PRK14010 441 VIKDGLVERFRELREMGIETVMCTGDNELTAATIAKEAGVDRFVA-----------ECKPEDKINVIREEQAKGHIVAMT 509 (673)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCceEEc-----------CCCHHHHHHHHHHHHhCCCEEEEE
Confidence 578999999999999999999999999999999999999975332 124555667777776666779999
Q ss_pred ecChhhhHHHHhcCCCEEEEcCCCChhhhhccCCcEEecC
Q 025896 188 EDSVSGIKAGVAAGLPVVGLTTRNPEHVLLEANPTFLIKD 227 (246)
Q Consensus 188 gD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i~~ 227 (246)
||+.||..+.+.|.+...+- .| .+.....+|.++-+
T Consensus 510 GDGvNDAPALa~ADVGIAMg-sG---TdvAkeAADiVLld 545 (673)
T PRK14010 510 GDGTNDAPALAEANVGLAMN-SG---TMSAKEAANLIDLD 545 (673)
T ss_pred CCChhhHHHHHhCCEEEEeC-CC---CHHHHHhCCEEEcC
Confidence 99999999999999754444 33 23444567777754
No 159
>PTZ00174 phosphomannomutase; Provisional
Probab=98.66 E-value=1.7e-09 Score=83.15 Aligned_cols=46 Identities=4% Similarity=-0.217 Sum_probs=38.4
Q ss_pred CCCCCCCChHHHHHHHHHcCCCCCcEEEEec----ChhhhHHHHhcCCCEEEEc
Q 025896 159 ECERAKPFPDPYFKALEMLKVSKDHTFVFED----SVSGIKAGVAAGLPVVGLT 208 (246)
Q Consensus 159 ~~~~~kp~~~~~~~~~~~~~~~~~~~~~igD----~~~Di~~a~~~G~~~i~v~ 208 (246)
....+..+..+++.+++. ++++++||| +.||++|.+.++...+.|.
T Consensus 182 I~~~gvsKg~al~~L~~~----~~eviafGD~~~~~~NDieMl~~~~~~g~~v~ 231 (247)
T PTZ00174 182 VFPKGWDKTYCLRHLEND----FKEIHFFGDKTFEGGNDYEIYNDPRTIGHSVK 231 (247)
T ss_pred eeeCCCcHHHHHHHHHhh----hhhEEEEcccCCCCCCcHhhhhcCCCceEEeC
Confidence 345566778889888888 599999999 8999999998888777775
No 160
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.65 E-value=4.5e-07 Score=69.87 Aligned_cols=45 Identities=11% Similarity=-0.131 Sum_probs=35.3
Q ss_pred CCCChHHHHHHHHHcCCC--CCcEEEEecChhhhHHHHhcCCCEEEE
Q 025896 163 AKPFPDPYFKALEMLKVS--KDHTFVFEDSVSGIKAGVAAGLPVVGL 207 (246)
Q Consensus 163 ~kp~~~~~~~~~~~~~~~--~~~~~~igD~~~Di~~a~~~G~~~i~v 207 (246)
..++..+.+.+.+.++-. +-.++.+|||+||+.|.+.+.++++.-
T Consensus 206 ~~dKg~A~~~L~~~y~~~~~~~~tiaLGDspND~~mLe~~D~~vvi~ 252 (302)
T PRK12702 206 SLPGEQAVQLLLDCYQRHLGPIKALGIGCSPPDLAFLRWSEQKVVLP 252 (302)
T ss_pred CCCHHHHHHHHHHHHHhccCCceEEEecCChhhHHHHHhCCeeEEec
Confidence 445677788777777553 447999999999999999999876653
No 161
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=98.64 E-value=1.4e-06 Score=66.38 Aligned_cols=103 Identities=14% Similarity=0.111 Sum_probs=62.7
Q ss_pred ccCCCcccHHHHHHHHHHcCCeEEEEeCCCHH---HHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHH-H---HHHHc
Q 025896 105 EQLKPISGLDKVKKWIEDRGLKRAAVTNAPRE---NAELMISKLGLSDFFQVVILGDECERAKPFPDPYF-K---ALEML 177 (246)
Q Consensus 105 ~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~---~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~-~---~~~~~ 177 (246)
...++.|++.++.+.+++.|+.|+++|+.+.. .....|.+.|...+ +..+.-......+.....++ . -+.+-
T Consensus 142 ~~ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~~NL~kaGy~~~-~~LiLR~~~D~~~~~av~yKs~~R~~li~e 220 (275)
T TIGR01680 142 GEAPALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTEANLKKAGYHTW-EKLILKDPQDNSAENAVEYKTAARAKLIQE 220 (275)
T ss_pred ccCCCChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHHcCCCCc-ceeeecCCCCCccchhHHHHHHHHHHHHHc
Confidence 45788999999999999999999999999753 35566777788654 44444322111211111222 1 11121
Q ss_pred CCCCCcEEEEecChhhhHHHHhcCCCEEEEcCC
Q 025896 178 KVSKDHTFVFEDSVSGIKAGVAAGLPVVGLTTR 210 (246)
Q Consensus 178 ~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~ 210 (246)
|. .=+..|||..+|+......+-.+.-+.++
T Consensus 221 GY--rIv~~iGDq~sDl~G~~~g~~RtFKLPNP 251 (275)
T TIGR01680 221 GY--NIVGIIGDQWNDLKGEHRGAIRSFKLPNP 251 (275)
T ss_pred Cc--eEEEEECCCHHhccCCCccCcceecCCCc
Confidence 22 23678999999996544222345555443
No 162
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=98.64 E-value=2.9e-07 Score=79.70 Aligned_cols=105 Identities=13% Similarity=0.129 Sum_probs=82.1
Q ss_pred CCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEEE
Q 025896 108 KPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEMLKVSKDHTFVF 187 (246)
Q Consensus 108 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~i 187 (246)
++.||+.+.+++||+.|+++.++|+.+......+.+.+|++++|- .-.|+-..++.+.++-..+-+.|+
T Consensus 445 ~~R~~~~eai~~Lr~~GI~vvMiTGDn~~TA~aIA~elGId~v~A-----------~~~PedK~~iV~~lQ~~G~~VaMt 513 (679)
T PRK01122 445 IVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVDDFLA-----------EATPEDKLALIRQEQAEGRLVAMT 513 (679)
T ss_pred cCchhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCcEEEc-----------cCCHHHHHHHHHHHHHcCCeEEEE
Confidence 568999999999999999999999999999999999999975322 124555566777766666679999
Q ss_pred ecChhhhHHHHhcCCCEEEEcCCCChhhhhccCCcEEecC
Q 025896 188 EDSVSGIKAGVAAGLPVVGLTTRNPEHVLLEANPTFLIKD 227 (246)
Q Consensus 188 gD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i~~ 227 (246)
||+.||..+.+.|.+...+- .|. +.....+|.++-+
T Consensus 514 GDGvNDAPALa~ADVGIAMg-sGT---dvAkeAADiVLld 549 (679)
T PRK01122 514 GDGTNDAPALAQADVGVAMN-SGT---QAAKEAGNMVDLD 549 (679)
T ss_pred CCCcchHHHHHhCCEeEEeC-CCC---HHHHHhCCEEEeC
Confidence 99999999999999765554 333 3344567777754
No 163
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=98.62 E-value=5e-07 Score=59.24 Aligned_cols=85 Identities=19% Similarity=0.166 Sum_probs=55.4
Q ss_pred CCCcccHHHHHHHHHHcCCeEEEEeCCCH---HHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHcCCCCCc
Q 025896 107 LKPISGLDKVKKWIEDRGLKRAAVTNAPR---ENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEMLKVSKDH 183 (246)
Q Consensus 107 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~---~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~ 183 (246)
..++||+.++|++|+++|.+++++||++. ......|+.+|+.--.+.++++. ......+++. ....+
T Consensus 13 ~~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~~~i~ts~---------~~~~~~l~~~-~~~~~ 82 (101)
T PF13344_consen 13 NEPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPVDEDEIITSG---------MAAAEYLKEH-KGGKK 82 (101)
T ss_dssp TEE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT--GGGEEEHH---------HHHHHHHHHH-TTSSE
T ss_pred CCcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCCCcCEEEChH---------HHHHHHHHhc-CCCCE
Confidence 45789999999999999999999999864 45666778889874445565543 2233444442 33466
Q ss_pred EEEEecChhhhHHHHhcCC
Q 025896 184 TFVFEDSVSGIKAGVAAGL 202 (246)
Q Consensus 184 ~~~igD~~~Di~~a~~~G~ 202 (246)
+.++|-. ...+.++++|+
T Consensus 83 v~vlG~~-~l~~~l~~~G~ 100 (101)
T PF13344_consen 83 VYVLGSD-GLREELREAGF 100 (101)
T ss_dssp EEEES-H-HHHHHHHHTTE
T ss_pred EEEEcCH-HHHHHHHHcCC
Confidence 7777754 55666666664
No 164
>PLN02423 phosphomannomutase
Probab=98.54 E-value=1.3e-08 Score=78.02 Aligned_cols=46 Identities=9% Similarity=-0.185 Sum_probs=37.7
Q ss_pred CCCCCCChHHHHHHHHHcCCCCCcEEEEec----ChhhhHHHHhcCCCEEEEcCC
Q 025896 160 CERAKPFPDPYFKALEMLKVSKDHTFVFED----SVSGIKAGVAAGLPVVGLTTR 210 (246)
Q Consensus 160 ~~~~kp~~~~~~~~~~~~~~~~~~~~~igD----~~~Di~~a~~~G~~~i~v~~~ 210 (246)
+..+..|..+++.++ +++++++||| +.||++|.+..|+.++-|..+
T Consensus 184 ~~~gvnKg~al~~L~-----~~~e~~aFGD~~~~~~ND~eMl~~~~~~~~~~~~~ 233 (245)
T PLN02423 184 FPQGWDKTYCLQFLE-----DFDEIHFFGDKTYEGGNDHEIFESERTIGHTVTSP 233 (245)
T ss_pred eeCCCCHHHHHHHhc-----CcCeEEEEeccCCCCCCcHHHHhCCCcceEEeCCH
Confidence 355666666666666 8999999999 799999999999999999654
No 165
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=98.54 E-value=7.3e-07 Score=77.41 Aligned_cols=106 Identities=13% Similarity=0.144 Sum_probs=80.7
Q ss_pred CCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEE
Q 025896 107 LKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEMLKVSKDHTFV 186 (246)
Q Consensus 107 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~ 186 (246)
..+.|++.+.+++||+.|+++.++|+.+....+.+.+++|+++++-.+ .|+-.....+++.-.-..++|
T Consensus 536 D~~R~~a~~aI~~L~~~Gi~~~mLTGDn~~~A~~iA~~lGId~v~Ael-----------lPedK~~~V~~l~~~g~~Vam 604 (713)
T COG2217 536 DELRPDAKEAIAALKALGIKVVMLTGDNRRTAEAIAKELGIDEVRAEL-----------LPEDKAEIVRELQAEGRKVAM 604 (713)
T ss_pred CCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcChHhheccC-----------CcHHHHHHHHHHHhcCCEEEE
Confidence 367899999999999999999999999999999999999997654432 233344566666655578999
Q ss_pred EecChhhhHHHHhcCCCEEEEcCCCChhhhhccCCcEEecC
Q 025896 187 FEDSVSGIKAGVAAGLPVVGLTTRNPEHVLLEANPTFLIKD 227 (246)
Q Consensus 187 igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i~~ 227 (246)
|||+.||..+...+.+...+-. | .+.....+|.++=+
T Consensus 605 VGDGINDAPALA~AdVGiAmG~-G---tDvA~eaADvvL~~ 641 (713)
T COG2217 605 VGDGINDAPALAAADVGIAMGS-G---TDVAIEAADVVLMR 641 (713)
T ss_pred EeCCchhHHHHhhcCeeEeecC-C---cHHHHHhCCEEEec
Confidence 9999999999999997644442 2 23333467776654
No 166
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=98.51 E-value=1.5e-06 Score=77.17 Aligned_cols=114 Identities=16% Similarity=0.142 Sum_probs=84.1
Q ss_pred CCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCC----------------------CCCCC
Q 025896 108 KPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDEC----------------------ERAKP 165 (246)
Q Consensus 108 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~----------------------~~~kp 165 (246)
++.|++.+.+++||+.|+++.++|+.+...+..+.+++|+.+. ++++++. ....-
T Consensus 442 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~lGI~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vfAr~ 518 (755)
T TIGR01647 442 PPRHDTKETIERARHLGVEVKMVTGDHLAIAKETARRLGLGTN---IYTADVLLKGDNRDDLPSGELGEMVEDADGFAEV 518 (755)
T ss_pred CChhhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCC---CcCHHHhcCCcchhhCCHHHHHHHHHhCCEEEec
Confidence 6789999999999999999999999999999999999999641 1111110 11223
Q ss_pred ChHHHHHHHHHcCCCCCcEEEEecChhhhHHHHhcCCCEEEEcCCCChhhhhccCCcEEecCC
Q 025896 166 FPDPYFKALEMLKVSKDHTFVFEDSVSGIKAGVAAGLPVVGLTTRNPEHVLLEANPTFLIKDY 228 (246)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i~~~ 228 (246)
.|+-..++.+.++-..+.+.|+||+.||..+.+.|.+...+- .+ .+.....+|.++-+-
T Consensus 519 ~Pe~K~~iV~~lq~~G~~VamvGDGvNDapAL~~AdVGIAm~-~g---tdvAkeaADivLl~d 577 (755)
T TIGR01647 519 FPEHKYEIVEILQKRGHLVGMTGDGVNDAPALKKADVGIAVA-GA---TDAARSAADIVLTEP 577 (755)
T ss_pred CHHHHHHHHHHHHhcCCEEEEEcCCcccHHHHHhCCeeEEec-CC---cHHHHHhCCEEEEcC
Confidence 455556667777666677999999999999999999875543 32 344456778877543
No 167
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=98.49 E-value=1.3e-06 Score=79.33 Aligned_cols=120 Identities=15% Similarity=0.106 Sum_probs=85.9
Q ss_pred CCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCC----------------CCCCCChHHHH
Q 025896 108 KPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDEC----------------ERAKPFPDPYF 171 (246)
Q Consensus 108 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~----------------~~~kp~~~~~~ 171 (246)
++.|++.+.+++|++.|++++++|+.+...+..+.+.+|+.+--..++.+.+. -...-.|+-..
T Consensus 579 plr~~~~~aI~~l~~aGI~v~miTGD~~~tA~~iA~~~GI~~~~~~vi~G~~~~~l~~~el~~~i~~~~Vfar~sPe~K~ 658 (941)
T TIGR01517 579 PLRPGVREAVQECQRAGITVRMVTGDNIDTAKAIARNCGILTFGGLAMEGKEFRRLVYEEMDPILPKLRVLARSSPLDKQ 658 (941)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcCCCCCCceEeeHHHhhhCCHHHHHHHhccCeEEEECCHHHHH
Confidence 67889999999999999999999999999999999999986322223332221 11223455556
Q ss_pred HHHHHcCCCCCcEEEEecChhhhHHHHhcCCCEEEEcCCCChhhhhccCCcEEec--CCCC
Q 025896 172 KALEMLKVSKDHTFVFEDSVSGIKAGVAAGLPVVGLTTRNPEHVLLEANPTFLIK--DYDD 230 (246)
Q Consensus 172 ~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i~--~~~e 230 (246)
++.+.+.-..+.+.|+||+.||..+.++|.++..+-..+ .+.....+|+++- ++..
T Consensus 659 ~iV~~lq~~g~vVam~GDGvNDapALk~AdVGIAmg~~g---tdvAk~aADivL~dd~f~~ 716 (941)
T TIGR01517 659 LLVLMLKDMGEVVAVTGDGTNDAPALKLADVGFSMGISG---TEVAKEASDIILLDDNFAS 716 (941)
T ss_pred HHHHHHHHCCCEEEEECCCCchHHHHHhCCcceecCCCc---cHHHHHhCCEEEecCCHHH
Confidence 666666555567999999999999999999765542122 3334567888887 4444
No 168
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=98.48 E-value=1.6e-06 Score=78.15 Aligned_cols=114 Identities=14% Similarity=0.129 Sum_probs=84.5
Q ss_pred CCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCC----------------CCCCCChHHHH
Q 025896 108 KPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDEC----------------ERAKPFPDPYF 171 (246)
Q Consensus 108 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~----------------~~~kp~~~~~~ 171 (246)
++.|++.+.+++||+.|+++.++|+.+...+..+.+.+|+.. +.++++.+. -...-.|+-..
T Consensus 550 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~aIA~~lGI~~--~~vi~G~el~~~~~~el~~~v~~~~VfAr~sPe~K~ 627 (903)
T PRK15122 550 PPKESAAPAIAALRENGVAVKVLTGDNPIVTAKICREVGLEP--GEPLLGTEIEAMDDAALAREVEERTVFAKLTPLQKS 627 (903)
T ss_pred ccHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCC--CCccchHhhhhCCHHHHHHHhhhCCEEEEeCHHHHH
Confidence 678999999999999999999999999999999999999952 222322221 11223455566
Q ss_pred HHHHHcCCCCCcEEEEecChhhhHHHHhcCCCEEEEcCCCChhhhhccCCcEEecC
Q 025896 172 KALEMLKVSKDHTFVFEDSVSGIKAGVAAGLPVVGLTTRNPEHVLLEANPTFLIKD 227 (246)
Q Consensus 172 ~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i~~ 227 (246)
++.+.+.-..+.+.|+||+.||..+.+.|.+...+- .| .+.....+|.++-+
T Consensus 628 ~iV~~Lq~~G~vVamtGDGvNDaPALk~ADVGIAmg-~g---tdvAkeaADiVLld 679 (903)
T PRK15122 628 RVLKALQANGHTVGFLGDGINDAPALRDADVGISVD-SG---ADIAKESADIILLE 679 (903)
T ss_pred HHHHHHHhCCCEEEEECCCchhHHHHHhCCEEEEeC-cc---cHHHHHhcCEEEec
Confidence 677777666677999999999999999999764443 32 34455678888854
No 169
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=98.48 E-value=1.5e-06 Score=78.12 Aligned_cols=114 Identities=12% Similarity=0.129 Sum_probs=83.2
Q ss_pred CCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCC----------------CCCCCChHHHH
Q 025896 108 KPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDEC----------------ERAKPFPDPYF 171 (246)
Q Consensus 108 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~----------------~~~kp~~~~~~ 171 (246)
++.|++.+.+++|++.|+++.++|+.+...+..+.+++|+.. +.++++.+. -...-.|+-..
T Consensus 515 p~R~~~~~aI~~l~~aGI~vvmiTGD~~~tA~aIA~~lGI~~--~~v~~g~~l~~~~~~el~~~~~~~~vfAr~~Pe~K~ 592 (867)
T TIGR01524 515 PPKESTKEAIAALFKNGINVKVLTGDNEIVTARICQEVGIDA--NDFLLGADIEELSDEELARELRKYHIFARLTPMQKS 592 (867)
T ss_pred CCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCC--CCeeecHhhhhCCHHHHHHHhhhCeEEEECCHHHHH
Confidence 578999999999999999999999999999999999999962 122322211 11222445555
Q ss_pred HHHHHcCCCCCcEEEEecChhhhHHHHhcCCCEEEEcCCCChhhhhccCCcEEecC
Q 025896 172 KALEMLKVSKDHTFVFEDSVSGIKAGVAAGLPVVGLTTRNPEHVLLEANPTFLIKD 227 (246)
Q Consensus 172 ~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i~~ 227 (246)
++.+.+.-..+.+.|+||+.||..+.+.|+++..+- .+ .+.....+|.++-+
T Consensus 593 ~iV~~lq~~G~vVam~GDGvNDapALk~AdVGIAmg-~g---tdvAk~aADiVLld 644 (867)
T TIGR01524 593 RIIGLLKKAGHTVGFLGDGINDAPALRKADVGISVD-TA---ADIAKEASDIILLE 644 (867)
T ss_pred HHHHHHHhCCCEEEEECCCcccHHHHHhCCEEEEeC-Cc---cHHHHHhCCEEEec
Confidence 666666555567999999999999999999765543 33 34445678887754
No 170
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=98.48 E-value=1.6e-06 Score=79.27 Aligned_cols=120 Identities=15% Similarity=0.158 Sum_probs=86.4
Q ss_pred CCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCc----------ceEEEecCCCC----------------
Q 025896 108 KPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDF----------FQVVILGDECE---------------- 161 (246)
Q Consensus 108 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~----------f~~~~~~~~~~---------------- 161 (246)
++.|++.+.++.|++.|++++++|+.+...+..+.+.+|+.+- -..++++.+..
T Consensus 646 p~r~~v~~aI~~l~~aGIkv~MiTGD~~~tA~~iA~~~Gi~~~~~~~~~~~~~~~~vitG~~l~~l~~~~l~~~~~~~~V 725 (1053)
T TIGR01523 646 PPRNESAGAVEKCHQAGINVHMLTGDFPETAKAIAQEVGIIPPNFIHDRDEIMDSMVMTGSQFDALSDEEVDDLKALCLV 725 (1053)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHcCCCCccccccccccccceeeehHHhhhcCHHHHHHHhhcCeE
Confidence 6789999999999999999999999999999999999999531 01233332211
Q ss_pred CCCCChHHHHHHHHHcCCCCCcEEEEecChhhhHHHHhcCCCEEEEcCCCChhhhhccCCcEEecC--CCC
Q 025896 162 RAKPFPDPYFKALEMLKVSKDHTFVFEDSVSGIKAGVAAGLPVVGLTTRNPEHVLLEANPTFLIKD--YDD 230 (246)
Q Consensus 162 ~~kp~~~~~~~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i~~--~~e 230 (246)
...-.|+-..++.+.+.-..+.+.|+||+.||..|.+.|+++..+-..+ .+.....+|+++.+ +..
T Consensus 726 ~ar~sP~~K~~iV~~lq~~g~~Vam~GDGvNDapaLk~AdVGIAmg~~g---t~vak~aADivl~dd~f~~ 793 (1053)
T TIGR01523 726 IARCAPQTKVKMIEALHRRKAFCAMTGDGVNDSPSLKMANVGIAMGING---SDVAKDASDIVLSDDNFAS 793 (1053)
T ss_pred EEecCHHHHHHHHHHHHhcCCeeEEeCCCcchHHHHHhCCccEecCCCc---cHHHHHhcCEEEecCCHHH
Confidence 1223455555666666655677999999999999999999775542222 23345678888865 554
No 171
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=98.47 E-value=1.7e-06 Score=77.91 Aligned_cols=115 Identities=15% Similarity=0.112 Sum_probs=85.2
Q ss_pred CCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCC----------------CCCCCChHHH
Q 025896 107 LKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDEC----------------ERAKPFPDPY 170 (246)
Q Consensus 107 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~----------------~~~kp~~~~~ 170 (246)
.++.|++.+.+++|++.|+++.++|+.+...+..+.+++|+.. +.++++.+. -...-.|+-.
T Consensus 549 Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~lGI~~--~~v~~G~el~~l~~~el~~~~~~~~VfAr~sPe~K 626 (902)
T PRK10517 549 DPPKETTAPALKALKASGVTVKILTGDSELVAAKVCHEVGLDA--GEVLIGSDIETLSDDELANLAERTTLFARLTPMHK 626 (902)
T ss_pred CcchhhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCc--cCceeHHHHHhCCHHHHHHHHhhCcEEEEcCHHHH
Confidence 3578999999999999999999999999999999999999952 233333221 1122345556
Q ss_pred HHHHHHcCCCCCcEEEEecChhhhHHHHhcCCCEEEEcCCCChhhhhccCCcEEecC
Q 025896 171 FKALEMLKVSKDHTFVFEDSVSGIKAGVAAGLPVVGLTTRNPEHVLLEANPTFLIKD 227 (246)
Q Consensus 171 ~~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i~~ 227 (246)
.++.+.+.-..+.+.|+||+.||..+.+.|.+...+- .+ .+.....+|.++-+
T Consensus 627 ~~IV~~Lq~~G~vVam~GDGvNDaPALk~ADVGIAmg-~g---tdvAkeaADiVLld 679 (902)
T PRK10517 627 ERIVTLLKREGHVVGFMGDGINDAPALRAADIGISVD-GA---VDIAREAADIILLE 679 (902)
T ss_pred HHHHHHHHHCCCEEEEECCCcchHHHHHhCCEEEEeC-Cc---CHHHHHhCCEEEec
Confidence 6666766656667899999999999999999765443 33 34455678888864
No 172
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=98.44 E-value=3.1e-05 Score=59.43 Aligned_cols=104 Identities=15% Similarity=0.249 Sum_probs=74.1
Q ss_pred CCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHH---HhcCCC--Cc-c--eEEE----e-c---------CC--CCCC
Q 025896 108 KPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMI---SKLGLS--DF-F--QVVI----L-G---------DE--CERA 163 (246)
Q Consensus 108 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l---~~~~l~--~~-f--~~~~----~-~---------~~--~~~~ 163 (246)
..-+.+.++++.|++.|+++..+|..+.......+ .++|+. .. | +..+ . . +. ...+
T Consensus 81 lie~~~~~~i~~lq~~~~~v~alT~~~~~~~~~t~~~Lk~~gi~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~GIlft~~ 160 (252)
T PF11019_consen 81 LIESDVPNIINSLQNKGIPVIALTARGPNMEDWTLRELKSLGIDFSSSSFPEDGIISFPVFDSALSRAPSFYDGILFTGG 160 (252)
T ss_pred EcchhHHHHHHHHHHCCCcEEEEcCCChhhHHHHHHHHHHCCCCccccccccCcceecccccCCCCCCceeecCeEEeCC
Confidence 34568899999999999999999999876655444 445654 11 1 0000 0 0 00 1234
Q ss_pred CCChHHHHHHHHHcCCCCCcEEEEecChhhhH----HHHhcCCCEEEEcCCC
Q 025896 164 KPFPDPYFKALEMLKVSKDHTFVFEDSVSGIK----AGVAAGLPVVGLTTRN 211 (246)
Q Consensus 164 kp~~~~~~~~~~~~~~~~~~~~~igD~~~Di~----~a~~~G~~~i~v~~~~ 211 (246)
-++..++..++.+.+..|+.++||+|+..++. +++..|+.++++....
T Consensus 161 ~~KG~~L~~fL~~~~~~pk~IIfIDD~~~nl~sv~~a~k~~~I~f~G~~Yt~ 212 (252)
T PF11019_consen 161 QDKGEVLKYFLDKINQSPKKIIFIDDNKENLKSVEKACKKSGIDFIGFHYTG 212 (252)
T ss_pred CccHHHHHHHHHHcCCCCCeEEEEeCCHHHHHHHHHHHhhCCCcEEEEEEcc
Confidence 55678999999999999999999999998774 4455799988887654
No 173
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=98.43 E-value=2.1e-06 Score=60.34 Aligned_cols=97 Identities=16% Similarity=0.178 Sum_probs=66.9
Q ss_pred CCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHH---HHH-HhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHcCCCCC
Q 025896 107 LKPISGLDKVKKWIEDRGLKRAAVTNAPRENAE---LMI-SKLGLSDFFQVVILGDECERAKPFPDPYFKALEMLKVSKD 182 (246)
Q Consensus 107 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~---~~l-~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~ 182 (246)
..|.+-++.++....++|-.|+.+|+..+...+ ..| +.+.+......++.++ ..||........++..++
T Consensus 113 SIPKevA~qLI~MHq~RGD~i~FvTGRt~gk~d~vsk~Lak~F~i~~m~pv~f~Gd---k~k~~qy~Kt~~i~~~~~--- 186 (237)
T COG3700 113 SIPKEVARQLIDMHQRRGDAIYFVTGRTPGKTDTVSKTLAKNFHITNMNPVIFAGD---KPKPGQYTKTQWIQDKNI--- 186 (237)
T ss_pred cchHHHHHHHHHHHHhcCCeEEEEecCCCCcccccchhHHhhcccCCCcceeeccC---CCCcccccccHHHHhcCc---
Confidence 344455788999999999999999998765433 333 3345654444444333 234444444466776666
Q ss_pred cEEEEecChhhhHHHHhcCCCEEEEcCC
Q 025896 183 HTFVFEDSVSGIKAGVAAGLPVVGLTTR 210 (246)
Q Consensus 183 ~~~~igD~~~Di~~a~~~G~~~i~v~~~ 210 (246)
-++.|||.+|+-+|+++|...|.+.+-
T Consensus 187 -~IhYGDSD~Di~AAkeaG~RgIRilRA 213 (237)
T COG3700 187 -RIHYGDSDNDITAAKEAGARGIRILRA 213 (237)
T ss_pred -eEEecCCchhhhHHHhcCccceeEEec
Confidence 589999999999999999998887665
No 174
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=98.42 E-value=4.8e-07 Score=80.08 Aligned_cols=72 Identities=11% Similarity=0.038 Sum_probs=54.0
Q ss_pred CCCCCChHHHHHHHHHcCCCCCcEEEEecChhhhHHHHhcCCCEEEEcCCCChhhhhccCCcEEecCCCChhhHHHHhhh
Q 025896 161 ERAKPFPDPYFKALEMLKVSKDHTFVFEDSVSGIKAGVAAGLPVVGLTTRNPEHVLLEANPTFLIKDYDDPKLWSALEEL 240 (246)
Q Consensus 161 ~~~kp~~~~~~~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i~~~~el~~~~~l~~~ 240 (246)
.....|..+++.+++ +++++.+++|||+.||+.|++.++.....+.-|+. ...+.+++++.+| +..+|+.+
T Consensus 653 p~~vnKG~al~~ll~--~~~~d~vl~~GD~~nDe~Mf~~~~~~~~~v~vG~~-----~s~A~~~l~~~~e--V~~~L~~l 723 (726)
T PRK14501 653 PAGVNKGRAVRRLLE--AGPYDFVLAIGDDTTDEDMFRALPETAITVKVGPG-----ESRARYRLPSQRE--VRELLRRL 723 (726)
T ss_pred ECCCCHHHHHHHHHh--cCCCCEEEEECCCCChHHHHHhcccCceEEEECCC-----CCcceEeCCCHHH--HHHHHHHH
Confidence 445567788888888 78889999999999999999997532333333332 3578899999888 77777766
Q ss_pred h
Q 025896 241 D 241 (246)
Q Consensus 241 ~ 241 (246)
.
T Consensus 724 ~ 724 (726)
T PRK14501 724 L 724 (726)
T ss_pred h
Confidence 4
No 175
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=98.42 E-value=3.5e-06 Score=62.32 Aligned_cols=87 Identities=14% Similarity=0.165 Sum_probs=61.9
Q ss_pred ccCCCcccHHHHHHHHHHcCCeEEEEeCCCHHH----HHHHHHhcCCCCcc-eEEEecCCCCCCCCChHHHHHHHHHcCC
Q 025896 105 EQLKPISGLDKVKKWIEDRGLKRAAVTNAPREN----AELMISKLGLSDFF-QVVILGDECERAKPFPDPYFKALEMLKV 179 (246)
Q Consensus 105 ~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~----~~~~l~~~~l~~~f-~~~~~~~~~~~~kp~~~~~~~~~~~~~~ 179 (246)
...++.||+.+|+.+.-++|..|..+||+.... ...-|.+.|+...- +.++.- ...+++..-.+.+-+.+
T Consensus 119 ~~sk~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~~~~~~T~~nLk~~g~~~~~~~~~llk---k~~k~Ke~R~~~v~k~~-- 193 (274)
T COG2503 119 KKSKAVPGAVEFLNYVNSNGGKIFYISNRDQENEKDGTIENLKSEGLPQVLESHLLLK---KDKKSKEVRRQAVEKDY-- 193 (274)
T ss_pred cccccCccHHHHHHHHHhcCcEEEEEeccchhcccchhHHHHHHcCcccccccceEEe---eCCCcHHHHHHHHhhcc--
Confidence 357899999999999999999999999997755 45667777877543 222222 33555555555555543
Q ss_pred CCCcEEEEecChhhhHHHH
Q 025896 180 SKDHTFVFEDSVSGIKAGV 198 (246)
Q Consensus 180 ~~~~~~~igD~~~Di~~a~ 198 (246)
.-++.|||++.|+-...
T Consensus 194 --~iVm~vGDNl~DF~d~~ 210 (274)
T COG2503 194 --KIVMLVGDNLDDFGDNA 210 (274)
T ss_pred --ceeeEecCchhhhcchh
Confidence 44899999999885443
No 176
>PLN02645 phosphoglycolate phosphatase
Probab=98.34 E-value=5.4e-06 Score=66.00 Aligned_cols=90 Identities=20% Similarity=0.176 Sum_probs=69.7
Q ss_pred CCcccHHHHHHHHHHcCCeEEEEeCCC---HHHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHcCCCCCcE
Q 025896 108 KPISGLDKVKKWIEDRGLKRAAVTNAP---RENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEMLKVSKDHT 184 (246)
Q Consensus 108 ~~~~~~~~~l~~l~~~g~~i~i~s~~~---~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~ 184 (246)
.++||+.++|++|+++|++++++||++ .......++.+|+...++.++++.. .....++..+....+.
T Consensus 44 ~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~~~~~~I~ts~~---------~~~~~l~~~~~~~~~~ 114 (311)
T PLN02645 44 KLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLNVTEEEIFSSSF---------AAAAYLKSINFPKDKK 114 (311)
T ss_pred ccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCCCChhhEeehHH---------HHHHHHHhhccCCCCE
Confidence 367999999999999999999999987 4444556678898766777765532 4456666666655556
Q ss_pred EEEecChhhhHHHHhcCCCEEE
Q 025896 185 FVFEDSVSGIKAGVAAGLPVVG 206 (246)
Q Consensus 185 ~~igD~~~Di~~a~~~G~~~i~ 206 (246)
++++++..+.+.++.+|+.++.
T Consensus 115 V~viG~~~~~~~l~~~Gi~~~~ 136 (311)
T PLN02645 115 VYVIGEEGILEELELAGFQYLG 136 (311)
T ss_pred EEEEcCHHHHHHHHHCCCEEec
Confidence 8888889999999999997654
No 177
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=98.33 E-value=4.6e-06 Score=75.44 Aligned_cols=117 Identities=18% Similarity=0.150 Sum_probs=85.3
Q ss_pred CCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcc--eEEEecCCCC----------------CCCCChH
Q 025896 107 LKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFF--QVVILGDECE----------------RAKPFPD 168 (246)
Q Consensus 107 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f--~~~~~~~~~~----------------~~kp~~~ 168 (246)
.+|.+++.+.++.|++.|++++++|+.+...+..+.+++|+..-- +.++.+.+.. ...-.|+
T Consensus 546 Dppr~~v~~aI~~l~~AGI~v~MiTGD~~~TA~aIa~~~Gi~~~~~~~~vi~G~el~~l~~~el~~~~~~~~VfARvsP~ 625 (917)
T COG0474 546 DPPREDVKEAIEELREAGIKVWMITGDHVETAIAIAKECGIEAEAESALVIDGAELDALSDEELAELVEELSVFARVSPE 625 (917)
T ss_pred CCCCccHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHcCCCCCCCceeEeehHHhhhcCHHHHHHHhhhCcEEEEcCHH
Confidence 468899999999999999999999999999999999999987433 2355443321 1222455
Q ss_pred HHHHHHHHcCCCCCcEEEEecChhhhHHHHhcCCCEEEEcCCCChhhhhccCCcEEec
Q 025896 169 PYFKALEMLKVSKDHTFVFEDSVSGIKAGVAAGLPVVGLTTRNPEHVLLEANPTFLIK 226 (246)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i~ 226 (246)
-..++.+.++-.-+-+.|+||+.||..|.++|.+...+...|... ....+|.+..
T Consensus 626 qK~~IV~~lq~~g~vVamtGDGvNDapALk~ADVGIamg~~Gtda---ak~Aadivl~ 680 (917)
T COG0474 626 QKARIVEALQKSGHVVAMTGDGVNDAPALKAADVGIAMGGEGTDA---AKEAADIVLL 680 (917)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCchhHHHHHhcCccEEecccHHHH---HHhhcceEee
Confidence 555666666656667899999999999999999887666544322 2234555443
No 178
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=98.32 E-value=5.7e-06 Score=75.62 Aligned_cols=117 Identities=16% Similarity=0.100 Sum_probs=82.3
Q ss_pred CCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcc------------------------eEEEecCCC---
Q 025896 108 KPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFF------------------------QVVILGDEC--- 160 (246)
Q Consensus 108 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f------------------------~~~~~~~~~--- 160 (246)
++.|++.+.+++|++.|++++++|+.+...+..+.+.+|+..-- ..++++.+.
T Consensus 568 plr~~v~~aI~~l~~~Gi~v~~~TGd~~~ta~~ia~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vi~G~~l~~l 647 (997)
T TIGR01106 568 PPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGSDLKDM 647 (997)
T ss_pred CChHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCCCccchhhhhhhccccccccccccccceEEEhHHhhhC
Confidence 56889999999999999999999999999999999999884210 023332211
Q ss_pred ---------------CCCCCChHHHHHHHHHcCCCCCcEEEEecChhhhHHHHhcCCCEEEEcCCCChhhhhccCCcEEe
Q 025896 161 ---------------ERAKPFPDPYFKALEMLKVSKDHTFVFEDSVSGIKAGVAAGLPVVGLTTRNPEHVLLEANPTFLI 225 (246)
Q Consensus 161 ---------------~~~kp~~~~~~~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i 225 (246)
-...-.|+-..++.+.+.-..+.+.++||+.||..|.+.|.++..+-..| .+.....+|+++
T Consensus 648 ~~~el~~~~~~~~~~VfaR~sPeqK~~IV~~lq~~g~vv~~~GDG~ND~paLk~AdVGiamg~~G---~~vak~aADivL 724 (997)
T TIGR01106 648 TSEQLDEILKYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGIAG---SDVSKQAADMIL 724 (997)
T ss_pred CHHHHHHHHHhcCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCCcccHHHHhhCCcceecCCcc---cHHHHHhhceEE
Confidence 11222444455555555555567899999999999999999765543233 233445788888
Q ss_pred cC
Q 025896 226 KD 227 (246)
Q Consensus 226 ~~ 227 (246)
.+
T Consensus 725 ~d 726 (997)
T TIGR01106 725 LD 726 (997)
T ss_pred ec
Confidence 76
No 179
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=98.20 E-value=7.6e-06 Score=58.10 Aligned_cols=86 Identities=15% Similarity=0.112 Sum_probs=65.5
Q ss_pred ccCCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCC-Ccc-eEEEecCCCCCCCCChHHHHHHHHHcCCCCC
Q 025896 105 EQLKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLS-DFF-QVVILGDECERAKPFPDPYFKALEMLKVSKD 182 (246)
Q Consensus 105 ~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~-~~f-~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~ 182 (246)
..++++||+.++|++|++. +.++|+|++...++..+++.++.. .+| +.+++.++... +. .+.+-.-++.+.+
T Consensus 55 ~~v~~rPgv~efL~~l~~~-yel~I~T~~~~~yA~~vl~~ldp~~~~F~~ri~~rd~~~~--~~---~KdL~~i~~~d~~ 128 (156)
T TIGR02250 55 YLTKLRPFLHEFLKEASKL-YEMHVYTMGTRAYAQAIAKLIDPDGKYFGDRIISRDESGS--PH---TKSLLRLFPADES 128 (156)
T ss_pred EEEEECCCHHHHHHHHHhh-cEEEEEeCCcHHHHHHHHHHhCcCCCeeccEEEEeccCCC--Cc---cccHHHHcCCCcc
Confidence 3578899999999999966 999999999999999999999988 588 66676665431 11 1122234577888
Q ss_pred cEEEEecChhhhHH
Q 025896 183 HTFVFEDSVSGIKA 196 (246)
Q Consensus 183 ~~~~igD~~~Di~~ 196 (246)
.+++|+|++.-...
T Consensus 129 ~vvivDd~~~~~~~ 142 (156)
T TIGR02250 129 MVVIIDDREDVWPW 142 (156)
T ss_pred cEEEEeCCHHHhhc
Confidence 99999999854443
No 180
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=98.17 E-value=4.8e-05 Score=57.96 Aligned_cols=86 Identities=15% Similarity=0.176 Sum_probs=66.1
Q ss_pred cccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCC-----------------------------
Q 025896 110 ISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDEC----------------------------- 160 (246)
Q Consensus 110 ~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~----------------------------- 160 (246)
.|.+.+.|.+||+.|..+++-|-++++....-++++++.++||.+++.+..
T Consensus 144 ~~~v~~sL~~Lk~~g~vLvLWSyG~~eHV~~sl~~~~L~~~Fd~ii~~G~~~~~~~~~~~~d~~~~~~f~~~~FylDv~~ 223 (297)
T PF05152_consen 144 DPAVYDSLRELKEQGCVLVLWSYGNREHVRHSLKELKLEGYFDIIICGGNKAGEYNSRVIVDRQYKVIFVSKPFYLDVTN 223 (297)
T ss_pred ChHHHHHHHHHHHcCCEEEEecCCCHHHHHHHHHHhCCccccEEEEeCCccCCcCCccceeecccceEEeccceEEeCCc
Confidence 355678899999999999999999999999999999999999999875421
Q ss_pred CCCCC-ChHHHHHHHHHcCCCCCc-EEEEecCh-hhhH
Q 025896 161 ERAKP-FPDPYFKALEMLKVSKDH-TFVFEDSV-SGIK 195 (246)
Q Consensus 161 ~~~kp-~~~~~~~~~~~~~~~~~~-~~~igD~~-~Di~ 195 (246)
....| .|......+++.|+..-+ +..|+|-. ||+.
T Consensus 224 ~~~LPKSPrVVL~yL~k~gvny~KtiTLVDDL~~Nn~~ 261 (297)
T PF05152_consen 224 VNNLPKSPRVVLWYLRKKGVNYFKTITLVDDLKSNNYS 261 (297)
T ss_pred CCCCCCCCeehHHHHHHcCCceeeeEEEeccCcccCcc
Confidence 01133 356777888888887744 44677766 6653
No 181
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=98.11 E-value=4.1e-05 Score=68.53 Aligned_cols=74 Identities=8% Similarity=-0.016 Sum_probs=54.2
Q ss_pred CCCCCChHHHHHHHH---HcCCCCCcEEEEecChhhhHHHHhcCC-------------CEEEEcCCCChhhhhccCCcEE
Q 025896 161 ERAKPFPDPYFKALE---MLKVSKDHTFVFEDSVSGIKAGVAAGL-------------PVVGLTTRNPEHVLLEANPTFL 224 (246)
Q Consensus 161 ~~~kp~~~~~~~~~~---~~~~~~~~~~~igD~~~Di~~a~~~G~-------------~~i~v~~~~~~~~~~~~~~~~~ 224 (246)
..+..|..+++.+++ .+|+.++.+++|||..||..|.+.++- -+|.| |. ....|.|.
T Consensus 758 p~gvnKG~Al~~Ll~~~~~~g~~~d~vl~~GDD~nDedMF~~~~~~~~g~~~~~~~~~~~v~V--G~-----~~S~A~y~ 830 (854)
T PLN02205 758 PQGVSKGLVAKRLLSIMQERGMLPDFVLCIGDDRSDEDMFEVITSSMAGPSIAPRAEVFACTV--GQ-----KPSKAKYY 830 (854)
T ss_pred eCCCCHHHHHHHHHHHHHhcCCCcccEEEEcCCccHHHHHHHhhhhccCCcccccccceeEEE--CC-----CCccCeEe
Confidence 345557778888875 468899999999999999999998762 23334 21 12567799
Q ss_pred ecCCCChhhHHHHhhhhcC
Q 025896 225 IKDYDDPKLWSALEELDKN 243 (246)
Q Consensus 225 i~~~~el~~~~~l~~~~~~ 243 (246)
+++..| +..+|+.+...
T Consensus 831 L~d~~e--V~~lL~~L~~~ 847 (854)
T PLN02205 831 LDDTAE--IVRLMQGLASV 847 (854)
T ss_pred cCCHHH--HHHHHHHHHhc
Confidence 999998 77777776653
No 182
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=98.05 E-value=4e-05 Score=66.39 Aligned_cols=117 Identities=15% Similarity=0.196 Sum_probs=85.5
Q ss_pred CCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcce----EEEecCCCC----------------CCCCC
Q 025896 107 LKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQ----VVILGDECE----------------RAKPF 166 (246)
Q Consensus 107 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~----~~~~~~~~~----------------~~kp~ 166 (246)
.+|++++.+.++.|++.|+++..+|+.+...+..+.++.|+...-+ ..+++.+.. ...-.
T Consensus 583 DPPR~ev~~ai~~c~~aGIrV~mITGD~~~TA~AI~r~iGi~~~~ed~~~~~~TG~efD~ls~~~~~~~~~~~~vFaR~~ 662 (972)
T KOG0202|consen 583 DPPRPEVADAIELCRQAGIRVIMITGDNKETAEAIAREIGIFSEDEDVSSMALTGSEFDDLSDEELDDAVRRVLVFARAE 662 (972)
T ss_pred CCCchhHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHhCCCcCCccccccccchhhhhcCCHHHHHHHhhcceEEEecC
Confidence 4688999999999999999999999999999999999999865433 233332211 11223
Q ss_pred hHHHHHHHHHcCCCCCcEEEEecChhhhHHHHhcCCCEEEEcCCCChhhhhccCCcEEec
Q 025896 167 PDPYFKALEMLKVSKDHTFVFEDSVSGIKAGVAAGLPVVGLTTRNPEHVLLEANPTFLIK 226 (246)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i~ 226 (246)
|.-..++.+.++-..+=+.|-||+.||-.+.+.|.+...+-..|. +-.+..+|.++.
T Consensus 663 P~HK~kIVeaLq~~geivAMTGDGVNDApALK~AdIGIAMG~~GT---dVaKeAsDMVL~ 719 (972)
T KOG0202|consen 663 PQHKLKIVEALQSRGEVVAMTGDGVNDAPALKKADIGIAMGISGT---DVAKEASDMVLA 719 (972)
T ss_pred chhHHHHHHHHHhcCCEEEecCCCccchhhhhhcccceeecCCcc---HhhHhhhhcEEe
Confidence 555667777777777778999999999999999997655544443 333345666654
No 183
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=98.05 E-value=5e-05 Score=66.40 Aligned_cols=109 Identities=11% Similarity=0.110 Sum_probs=77.6
Q ss_pred CCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEE
Q 025896 107 LKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEMLKVSKDHTFV 186 (246)
Q Consensus 107 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~ 186 (246)
.++.|++...+..||+.|++++++|+.+...++...++.|++ .++ ++ -+| +-.....+++.-+...++|
T Consensus 722 D~vr~~a~~av~~Lk~~Gi~v~mLTGDn~~aA~svA~~VGi~----~V~-ae----v~P--~~K~~~Ik~lq~~~~~VaM 790 (951)
T KOG0207|consen 722 DQVRPDAALAVAELKSMGIKVVMLTGDNDAAARSVAQQVGID----NVY-AE----VLP--EQKAEKIKEIQKNGGPVAM 790 (951)
T ss_pred cccchhHHHHHHHHHhcCceEEEEcCCCHHHHHHHHHhhCcc----eEE-ec----cCc--hhhHHHHHHHHhcCCcEEE
Confidence 467899999999999999999999999999999999999944 333 22 222 2223445555445577999
Q ss_pred EecChhhhHHHHhcCCCEEEEcCCCChhhhhccCCcEEec--CCCC
Q 025896 187 FEDSVSGIKAGVAAGLPVVGLTTRNPEHVLLEANPTFLIK--DYDD 230 (246)
Q Consensus 187 igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i~--~~~e 230 (246)
|||+.||-.+...+.+..... .| .+.....+|+++= ++.+
T Consensus 791 VGDGINDaPALA~AdVGIaig-~g---s~vAieaADIVLmrn~L~~ 832 (951)
T KOG0207|consen 791 VGDGINDAPALAQADVGIAIG-AG---SDVAIEAADIVLMRNDLRD 832 (951)
T ss_pred EeCCCCccHHHHhhccceeec-cc---cHHHHhhCCEEEEccchhh
Confidence 999999999999998764433 22 3333345666553 4444
No 184
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=98.03 E-value=4.3e-05 Score=51.90 Aligned_cols=48 Identities=10% Similarity=0.217 Sum_probs=34.2
Q ss_pred CCcccHHHHHHHHHHcCCeEEEEeCCCHHH---------------HHHHHHhcCCCCcceEEEec
Q 025896 108 KPISGLDKVKKWIEDRGLKRAAVTNAPREN---------------AELMISKLGLSDFFQVVILG 157 (246)
Q Consensus 108 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~---------------~~~~l~~~~l~~~f~~~~~~ 157 (246)
.+.+++.+.|+++++.|+.++++|+.+... +..+|.+.++. +|.++..
T Consensus 24 ~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~ip--Yd~l~~~ 86 (126)
T TIGR01689 24 APILAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHNVP--YDEIYVG 86 (126)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHHHcCCC--CceEEeC
Confidence 355678889999999999999999987643 34555665664 4555533
No 185
>PLN02580 trehalose-phosphatase
Probab=97.99 E-value=2.3e-05 Score=63.32 Aligned_cols=72 Identities=17% Similarity=0.089 Sum_probs=52.5
Q ss_pred CCCChHHHHHHHHHcCCCCCc---EEEEecChhhhHHHHhc-----CCCEEEEcCCCChhhhhccCCcEEecCCCChhhH
Q 025896 163 AKPFPDPYFKALEMLKVSKDH---TFVFEDSVSGIKAGVAA-----GLPVVGLTTRNPEHVLLEANPTFLIKDYDDPKLW 234 (246)
Q Consensus 163 ~kp~~~~~~~~~~~~~~~~~~---~~~igD~~~Di~~a~~~-----G~~~i~v~~~~~~~~~~~~~~~~~i~~~~el~~~ 234 (246)
...|..+++.+++.+++...+ .++|||..||..|.+.+ |+. |.+..+. ....|.|.+++..| +.
T Consensus 299 g~~KG~Av~~Ll~~~g~~~~d~~~pi~iGDD~TDedmF~~L~~~~~G~~-I~Vgn~~-----~~t~A~y~L~dp~e--V~ 370 (384)
T PLN02580 299 DWNKGKAVEFLLESLGLSNCDDVLPIYIGDDRTDEDAFKVLREGNRGYG-ILVSSVP-----KESNAFYSLRDPSE--VM 370 (384)
T ss_pred CCCHHHHHHHHHHhcCCCcccceeEEEECCCchHHHHHHhhhccCCceE-EEEecCC-----CCccceEEcCCHHH--HH
Confidence 456778899999999987653 38999999999999963 543 4443221 12467899999999 67
Q ss_pred HHHhhhhc
Q 025896 235 SALEELDK 242 (246)
Q Consensus 235 ~~l~~~~~ 242 (246)
.+|+.+..
T Consensus 371 ~~L~~L~~ 378 (384)
T PLN02580 371 EFLKSLVT 378 (384)
T ss_pred HHHHHHHH
Confidence 77766544
No 186
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=97.99 E-value=8.9e-05 Score=63.11 Aligned_cols=97 Identities=15% Similarity=0.131 Sum_probs=75.0
Q ss_pred CCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEEE
Q 025896 108 KPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEMLKVSKDHTFVF 187 (246)
Q Consensus 108 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~i 187 (246)
++.+++.+.+++|++.|++++++|+.+........+.+|+. ..-.|+-...+.+.+.-....+.++
T Consensus 347 ~lr~~~~~~i~~l~~~gi~~~~ltGD~~~~a~~ia~~lgi~--------------~~~~p~~K~~~v~~l~~~g~~v~~v 412 (499)
T TIGR01494 347 PLRDDAKETISELREAGIRVIMLTGDNVLTAKAIAKELGIF--------------ARVTPEEKAALVEALQKKGRVVAMT 412 (499)
T ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCce--------------eccCHHHHHHHHHHHHHCCCEEEEE
Confidence 67899999999999999999999999999999999999861 1124444445555554444779999
Q ss_pred ecChhhhHHHHhcCCCEEEEcCCCChhhhhccCCcEEecC
Q 025896 188 EDSVSGIKAGVAAGLPVVGLTTRNPEHVLLEANPTFLIKD 227 (246)
Q Consensus 188 gD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i~~ 227 (246)
||+.||..+.+.+++...+. ....+|.++-+
T Consensus 413 GDg~nD~~al~~Advgia~~---------a~~~adivl~~ 443 (499)
T TIGR01494 413 GDGVNDAPALKKADVGIAMG---------AKAAADIVLLD 443 (499)
T ss_pred CCChhhHHHHHhCCCccccc---------hHHhCCeEEec
Confidence 99999999999998763332 12357888876
No 187
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=97.98 E-value=9e-05 Score=51.73 Aligned_cols=97 Identities=13% Similarity=0.138 Sum_probs=60.9
Q ss_pred CCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCC-CcceEEEecCCCCCCCCChHHHHHHHHHcCCCCCcEE
Q 025896 107 LKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLS-DFFQVVILGDECERAKPFPDPYFKALEMLKVSKDHTF 185 (246)
Q Consensus 107 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~-~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~ 185 (246)
..+..++...|..+++. .+++.+|.......+....-+-.. -.+|.+...+. ..| -.+.+...+ -+
T Consensus 71 ~l~~q~v~~~L~~~~e~-~~L~~itar~~dl~~iT~~~l~~q~ih~~~l~i~g~--h~K------V~~vrth~i----dl 137 (194)
T COG5663 71 ALLAQLVKQVLPSLKEE-HRLIYITARKADLTRITYAWLFIQNIHYDHLEIVGL--HHK------VEAVRTHNI----DL 137 (194)
T ss_pred HHHHHHHHHHhHHHHhh-ceeeeeehhhHHHHHHHHHHHHHhccchhhhhhhcc--ccc------chhhHhhcc----Cc
Confidence 44556677888888887 688888887554433322222111 11344332221 222 124555556 36
Q ss_pred EEecCh-hhhHHHHhcCCCEEEEcCCCChhhh
Q 025896 186 VFEDSV-SGIKAGVAAGLPVVGLTTRNPEHVL 216 (246)
Q Consensus 186 ~igD~~-~Di~~a~~~G~~~i~v~~~~~~~~~ 216 (246)
|+.|+. |-.+.|+.+|++++.+++.+++.+.
T Consensus 138 f~ed~~~na~~iAk~~~~~vilins~ynRkp~ 169 (194)
T COG5663 138 FFEDSHDNAGQIAKNAGIPVILINSPYNRKPA 169 (194)
T ss_pred cccccCchHHHHHHhcCCcEEEecCcccccch
Confidence 999999 7888889999999999998766554
No 188
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=97.97 E-value=2.1e-05 Score=72.57 Aligned_cols=122 Identities=17% Similarity=0.162 Sum_probs=79.8
Q ss_pred CCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcce-----------------------------------
Q 025896 108 KPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQ----------------------------------- 152 (246)
Q Consensus 108 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~----------------------------------- 152 (246)
++.+|+.+.++.|++.|++++++|+.....+..+....|+.+--.
T Consensus 631 ~lq~~v~etI~~L~~AGIkv~mlTGD~~~TA~~IA~~~~ii~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 710 (1057)
T TIGR01652 631 KLQEGVPETIELLRQAGIKIWVLTGDKVETAINIGYSCRLLSRNMEQIVITSESLDATRSVEAAIKFGLEGTSEEFNNLG 710 (1057)
T ss_pred hhhhccHHHHHHHHHCCCeEEEEcCCcHHHHHHHHHHhCCCCCCCeEEEEecCchhhhHHHHHHHHHHHHHHHHhhhhhc
Confidence 688999999999999999999999999999998888877643111
Q ss_pred ------EEEecCCCC----------------------CCCCChHHHHHHHHHcCCC-CCcEEEEecChhhhHHHHhcCCC
Q 025896 153 ------VVILGDECE----------------------RAKPFPDPYFKALEMLKVS-KDHTFVFEDSVSGIKAGVAAGLP 203 (246)
Q Consensus 153 ------~~~~~~~~~----------------------~~kp~~~~~~~~~~~~~~~-~~~~~~igD~~~Di~~a~~~G~~ 203 (246)
.++.+.... ..+-.|.-..++.+.+.-. .+.++++||+.||+.|.++|.++
T Consensus 711 ~~~~~~lvi~G~~l~~~l~~~~~~~f~~l~~~~~~vV~aR~sP~qK~~IV~~lk~~~~~~vl~iGDG~ND~~mlk~AdVG 790 (1057)
T TIGR01652 711 DSGNVALVIDGKSLGYALDEELEKEFLQLALKCKAVICCRVSPSQKADVVRLVKKSTGKTTLAIGDGANDVSMIQEADVG 790 (1057)
T ss_pred cCCceEEEEccHHHHHHHhhHHHHHHHHHHhhCCEEEEeCCCHHHHHHHHHHHHhcCCCeEEEEeCCCccHHHHhhcCee
Confidence 122221100 0011122222233333222 46799999999999999999876
Q ss_pred EEEEcCCCChhhhhccCCcEEecCCCChh
Q 025896 204 VVGLTTRNPEHVLLEANPTFLIKDYDDPK 232 (246)
Q Consensus 204 ~i~v~~~~~~~~~~~~~~~~~i~~~~el~ 232 (246)
. ++.... . ......+|+++.++..+.
T Consensus 791 I-gi~g~e-g-~qA~~aaD~~i~~F~~L~ 816 (1057)
T TIGR01652 791 V-GISGKE-G-MQAVMASDFAIGQFRFLT 816 (1057)
T ss_pred e-EecChH-H-HHHHHhhhhhhhhHHHHH
Confidence 5 443221 1 123457899999877743
No 189
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=97.95 E-value=0.00014 Score=67.29 Aligned_cols=41 Identities=12% Similarity=0.110 Sum_probs=38.8
Q ss_pred CCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCC
Q 025896 108 KPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLS 148 (246)
Q Consensus 108 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~ 148 (246)
++.|++.+.+++|++.|++++++|+.+...+..+.+.+|+.
T Consensus 656 ~lr~~~~~~I~~l~~agi~v~miTGD~~~TA~~iA~~~gii 696 (1054)
T TIGR01657 656 PLKPDTKEVIKELKRASIRTVMITGDNPLTAVHVARECGIV 696 (1054)
T ss_pred CCCccHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCC
Confidence 68899999999999999999999999999999999999984
No 190
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=97.91 E-value=0.00017 Score=50.73 Aligned_cols=93 Identities=19% Similarity=0.240 Sum_probs=58.3
Q ss_pred CCcccHHHHHHHHHHcCCeEEEEeCCCHH---HHHHHHHhc-----CCCCcceEE-EecCC-------CCCCCCChHHHH
Q 025896 108 KPISGLDKVKKWIEDRGLKRAAVTNAPRE---NAELMISKL-----GLSDFFQVV-ILGDE-------CERAKPFPDPYF 171 (246)
Q Consensus 108 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~---~~~~~l~~~-----~l~~~f~~~-~~~~~-------~~~~kp~~~~~~ 171 (246)
...+|+.++.+.++++||++.-+|+.+.. ..+..|... ++. ++. +.+.+ ...-..+|+.|+
T Consensus 27 ~~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L~~~~q~~~~lP---~Gpv~~sP~~l~~al~rEvi~~~p~~fK 103 (157)
T PF08235_consen 27 WTHPGAAELYRKIADNGYKILYLTARPIGQANRTRSWLAQHQQQGHNLP---DGPVLLSPDSLFSALHREVISKDPEEFK 103 (157)
T ss_pred hhhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHHHHHHhCCccCC---CCCEEECCcchhhhhhccccccChHHHH
Confidence 45678999999999999999999999753 355666655 332 221 22210 011122444444
Q ss_pred -HHHHHcC-C----CCCcEEEEecChhhhHHHHhcCCC
Q 025896 172 -KALEMLK-V----SKDHTFVFEDSVSGIKAGVAAGLP 203 (246)
Q Consensus 172 -~~~~~~~-~----~~~~~~~igD~~~Di~~a~~~G~~ 203 (246)
.+|+.+. . ...=...+|++.+|+.+=+++|++
T Consensus 104 ~~~L~~l~~~f~~~~~pf~agfGN~~tDv~aY~~vGip 141 (157)
T PF08235_consen 104 IACLRDLRALFPPDGNPFYAGFGNRSTDVIAYKAVGIP 141 (157)
T ss_pred HHHHHHHHHhcCCCCCeEEEecCCcHHHHHHHHHcCCC
Confidence 2333331 1 112255789999999999999996
No 191
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.91 E-value=0.00016 Score=59.01 Aligned_cols=91 Identities=11% Similarity=0.111 Sum_probs=71.0
Q ss_pred CCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCC----CCCCCChHHHHHHHHHcCCCCC
Q 025896 107 LKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDEC----ERAKPFPDPYFKALEMLKVSKD 182 (246)
Q Consensus 107 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~----~~~kp~~~~~~~~~~~~~~~~~ 182 (246)
..++.....++..|+++|+-++|+|-+....+++.+.++. |.++.-++. -...|+.+.++++++++++..+
T Consensus 254 G~~fk~fQ~~Ik~l~kqGVlLav~SKN~~~da~evF~khp-----~MiLkeedfa~~~iNW~~K~eNirkIAkklNlg~d 328 (574)
T COG3882 254 GEAFKTFQNFIKGLKKQGVLLAVCSKNTEKDAKEVFRKHP-----DMILKEEDFAVFQINWDPKAENIRKIAKKLNLGLD 328 (574)
T ss_pred chhHHHHHHHHHHHHhccEEEEEecCCchhhHHHHHhhCC-----CeEeeHhhhhhheecCCcchhhHHHHHHHhCCCcc
Confidence 3444556788999999999999999999999999888764 222221111 2356888999999999999999
Q ss_pred cEEEEecChhhhHHHHhcCC
Q 025896 183 HTFVFEDSVSGIKAGVAAGL 202 (246)
Q Consensus 183 ~~~~igD~~~Di~~a~~~G~ 202 (246)
-.+||+|++-..+--+.-+-
T Consensus 329 SmvFiDD~p~ErE~vk~~~~ 348 (574)
T COG3882 329 SMVFIDDNPAERELVKRELP 348 (574)
T ss_pred ceEEecCCHHHHHHHHhcCc
Confidence 99999999988887777663
No 192
>COG5610 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=97.77 E-value=0.00013 Score=59.17 Aligned_cols=98 Identities=8% Similarity=0.003 Sum_probs=83.5
Q ss_pred cccHHHHHHHHHHcCCeEEEEeCC--CHHHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEEE
Q 025896 110 ISGLDKVKKWIEDRGLKRAAVTNA--PRENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEMLKVSKDHTFVF 187 (246)
Q Consensus 110 ~~~~~~~l~~l~~~g~~i~i~s~~--~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~i 187 (246)
.....++.+++.++|.+++++|+. +...++..|..+|.+-.---++.+.+....|.....|..+++.-+++|..++++
T Consensus 101 n~~~~eL~e~ai~n~krVIlISDMYlps~Il~~~L~s~g~d~~nipiY~S~e~rl~KnSg~LFk~Vlk~EnVd~~~w~H~ 180 (635)
T COG5610 101 NKKNIELVEEAIKNEKRVILISDMYLPSSILRTFLNSFGPDFNNIPIYMSSEFRLKKNSGNLFKAVLKLENVDPKKWIHC 180 (635)
T ss_pred cccchHHHHHHHhCCCeEEEEecccCcHHHHHHHHHhcCCCccCceeeecceeehhcccchHHHHHHhhcCCChhheEEe
Confidence 334578899999999999999997 456788999998876333336777777788889999999999999999999999
Q ss_pred ecCh-hhhHHHHhcCCCEEEE
Q 025896 188 EDSV-SGIKAGVAAGLPVVGL 207 (246)
Q Consensus 188 gD~~-~Di~~a~~~G~~~i~v 207 (246)
||+. .|..+++..|+.+.+.
T Consensus 181 GDN~~aD~l~pk~LgI~Tlf~ 201 (635)
T COG5610 181 GDNWVADYLKPKNLGISTLFY 201 (635)
T ss_pred cCchhhhhcCccccchhHHHH
Confidence 9999 8999999999998876
No 193
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.70 E-value=0.0031 Score=46.65 Aligned_cols=42 Identities=12% Similarity=0.208 Sum_probs=34.8
Q ss_pred ccCCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCC
Q 025896 105 EQLKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGL 147 (246)
Q Consensus 105 ~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l 147 (246)
...++.||+.+.++.|.+. ++-+++|.+...+++......|+
T Consensus 80 ~sa~lvPgA~etm~~l~~~-~tp~v~STSY~qy~~r~a~~ig~ 121 (315)
T COG4030 80 LSAKLVPGAEETMATLQER-WTPVVISTSYTQYLRRTASMIGV 121 (315)
T ss_pred hhcccCCChHHHHHHHhcc-CCceEEeccHHHHHHHHHHhcCC
Confidence 4578999999999999887 77778888877888887777765
No 194
>PLN03190 aminophospholipid translocase; Provisional
Probab=97.68 E-value=9.2e-05 Score=68.58 Aligned_cols=40 Identities=20% Similarity=0.149 Sum_probs=34.6
Q ss_pred CCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCC
Q 025896 108 KPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGL 147 (246)
Q Consensus 108 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l 147 (246)
++.+|+.+.++.|++.|++++++|+.....+..+....++
T Consensus 726 ~lr~~v~~~I~~l~~agi~v~mlTGD~~~tAi~IA~s~~L 765 (1178)
T PLN03190 726 KLQQGVPEAIESLRTAGIKVWVLTGDKQETAISIGYSSKL 765 (1178)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHhCC
Confidence 6889999999999999999999999988877776665554
No 195
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=97.67 E-value=0.00071 Score=56.24 Aligned_cols=80 Identities=13% Similarity=0.036 Sum_probs=49.2
Q ss_pred HHHHHHHcCCeEEEEeCCCHHHHHHHHHh-cCCCCcce--------EEEecCCCCCCCCChHH-HHHHHHHcCCCCCcEE
Q 025896 116 VKKWIEDRGLKRAAVTNAPRENAELMISK-LGLSDFFQ--------VVILGDECERAKPFPDP-YFKALEMLKVSKDHTF 185 (246)
Q Consensus 116 ~l~~l~~~g~~i~i~s~~~~~~~~~~l~~-~~l~~~f~--------~~~~~~~~~~~kp~~~~-~~~~~~~~~~~~~~~~ 185 (246)
.++..++.| +++++|..++.+.+.+++. +|.+...- +.+++--. ++...+. ..++.+.++ .....+
T Consensus 101 ~~~~~~~~g-~~vVVTAsPrvmVEpFake~LG~D~VvGTEL~v~~~G~~TG~~~--G~n~~ek~~~rl~~~~g-~~~~~v 176 (498)
T PLN02499 101 AWKVFSSCD-KRVVVTRMPRVMVERFAKEHLRADEVIGSELVVNRFGFATGFIR--GTDVDQSVANRVANLFV-DERPQL 176 (498)
T ss_pred HHHHHHcCC-eEEEEeCCHHHHHHHHHHHhcCCceEEeeeEEEeeccEEEEEEe--cCccHHHHHHHHHHHhC-ccCcee
Confidence 556667787 9999999999999999988 77654321 22222111 2222333 444555565 234578
Q ss_pred EEecChhhhHHHHh
Q 025896 186 VFEDSVSGIKAGVA 199 (246)
Q Consensus 186 ~igD~~~Di~~a~~ 199 (246)
-+||+..|-.-...
T Consensus 177 g~~~~~~~~~f~~~ 190 (498)
T PLN02499 177 GLGRISASSSFLSL 190 (498)
T ss_pred cccCCcccchhhhh
Confidence 88988866554444
No 196
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=97.65 E-value=0.00047 Score=50.64 Aligned_cols=92 Identities=14% Similarity=0.112 Sum_probs=59.4
Q ss_pred CCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCC--cc--eEEEecCC--------CC--CCCCChHHHHH
Q 025896 107 LKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSD--FF--QVVILGDE--------CE--RAKPFPDPYFK 172 (246)
Q Consensus 107 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~--~f--~~~~~~~~--------~~--~~kp~~~~~~~ 172 (246)
....|++.+||+.+.+. +.|+|.|++...++..++..+++.. .+ ..+..+.. .+ .-|+ +..
T Consensus 44 ~~kRP~l~eFL~~~~~~-feIvVwTAa~~~ya~~~l~~l~~~~~~~~~i~~~ld~~~~~~~~~~~~g~~~vKd----L~~ 118 (195)
T TIGR02245 44 ELMRPYLHEFLTSAYED-YDIVIWSATSMKWIEIKMTELGVLTNPNYKITFLLDSTAMITVHTPRRGKFDVKP----LGV 118 (195)
T ss_pred EEeCCCHHHHHHHHHhC-CEEEEEecCCHHHHHHHHHHhcccCCccceEEEEeccccceeeEeeccCcEEEee----cHH
Confidence 45679999999999996 9999999999999999999887532 11 11111110 01 1122 222
Q ss_pred HHHHcC--CCCCcEEEEecChhhhHHHHhcCCC
Q 025896 173 ALEMLK--VSKDHTFVFEDSVSGIKAGVAAGLP 203 (246)
Q Consensus 173 ~~~~~~--~~~~~~~~igD~~~Di~~a~~~G~~ 203 (246)
+-.+++ .+.+++++|+|++.-..+=-..|+.
T Consensus 119 lw~~l~~~~~~~ntiiVDd~p~~~~~~P~N~i~ 151 (195)
T TIGR02245 119 IWALLPEFYSMKNTIMFDDLRRNFLMNPQNGLK 151 (195)
T ss_pred hhhhcccCCCcccEEEEeCCHHHHhcCCCCccc
Confidence 333443 3778999999999655543334543
No 197
>PLN02151 trehalose-phosphatase
Probab=97.52 E-value=0.00033 Score=56.10 Aligned_cols=71 Identities=18% Similarity=0.117 Sum_probs=49.6
Q ss_pred CCChHHHHHHHHHcCCCCC---cEEEEecChhhhHHHHhc-----CCCEEEEcCCCChhhhhccCCcEEecCCCChhhHH
Q 025896 164 KPFPDPYFKALEMLKVSKD---HTFVFEDSVSGIKAGVAA-----GLPVVGLTTRNPEHVLLEANPTFLIKDYDDPKLWS 235 (246)
Q Consensus 164 kp~~~~~~~~~~~~~~~~~---~~~~igD~~~Di~~a~~~-----G~~~i~v~~~~~~~~~~~~~~~~~i~~~~el~~~~ 235 (246)
-.+..++..+++.++.... -.+||||...|-.+++.+ |+ .|.|..+. ....|.|.+++.++ +..
T Consensus 268 ~dKG~Av~~Ll~~~~~~~~~~~~pvyiGDD~TDEDaF~~L~~~~~G~-gI~Vg~~~-----k~T~A~y~L~dp~e--V~~ 339 (354)
T PLN02151 268 WDKGKALEFLLESLGYANCTDVFPIYIGDDRTDEDAFKILRDKKQGL-GILVSKYA-----KETNASYSLQEPDE--VME 339 (354)
T ss_pred CCHHHHHHHHHHhcccccCCCCeEEEEcCCCcHHHHHHHHhhcCCCc-cEEeccCC-----CCCcceEeCCCHHH--HHH
Confidence 3567789999999876533 289999999998888764 32 34453221 23478899999999 666
Q ss_pred HHhhhhc
Q 025896 236 ALEELDK 242 (246)
Q Consensus 236 ~l~~~~~ 242 (246)
+|+.+..
T Consensus 340 ~L~~L~~ 346 (354)
T PLN02151 340 FLERLVE 346 (354)
T ss_pred HHHHHHH
Confidence 6666543
No 198
>PLN03017 trehalose-phosphatase
Probab=97.48 E-value=0.00036 Score=56.05 Aligned_cols=72 Identities=11% Similarity=-0.020 Sum_probs=51.0
Q ss_pred CCChHHHHHHHHHcCCCC---CcEEEEecChhhhHHHHhcC----CCEEEEcCCCChhhhhccCCcEEecCCCChhhHHH
Q 025896 164 KPFPDPYFKALEMLKVSK---DHTFVFEDSVSGIKAGVAAG----LPVVGLTTRNPEHVLLEANPTFLIKDYDDPKLWSA 236 (246)
Q Consensus 164 kp~~~~~~~~~~~~~~~~---~~~~~igD~~~Di~~a~~~G----~~~i~v~~~~~~~~~~~~~~~~~i~~~~el~~~~~ 236 (246)
-.|..+++.+++.++... .-.+||||...|-.+++.+. .-.|.|... . ....|.|.+++..| +..+
T Consensus 282 ~dKG~Av~~LL~~l~~~~~~~~~pvyiGDD~TDEDaF~~L~~~~~G~gI~VG~~--~---k~T~A~y~L~dp~e--V~~f 354 (366)
T PLN03017 282 WDKGKALEFLLESLGFGNTNNVFPVYIGDDRTDEDAFKMLRDRGEGFGILVSKF--P---KDTDASYSLQDPSE--VMDF 354 (366)
T ss_pred CCHHHHHHHHHHhcccccCCCceEEEeCCCCccHHHHHHHhhcCCceEEEECCC--C---CCCcceEeCCCHHH--HHHH
Confidence 356788999999988753 34899999999988888662 124555321 1 12568899999999 6777
Q ss_pred Hhhhhc
Q 025896 237 LEELDK 242 (246)
Q Consensus 237 l~~~~~ 242 (246)
|+.+..
T Consensus 355 L~~L~~ 360 (366)
T PLN03017 355 LARLVE 360 (366)
T ss_pred HHHHHH
Confidence 766643
No 199
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=97.47 E-value=0.00026 Score=50.59 Aligned_cols=87 Identities=23% Similarity=0.257 Sum_probs=61.8
Q ss_pred cCCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCC-CCcceEEEecCCCCCCCCChHHHHHHHHHcCCCCCcE
Q 025896 106 QLKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGL-SDFFQVVILGDECERAKPFPDPYFKALEMLKVSKDHT 184 (246)
Q Consensus 106 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l-~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~ 184 (246)
.+.+.||+.++|+++.+. +.++|.|.+...+++.+++.+.- ..+|+.++..+.....+.. . .+-++.++.+.+++
T Consensus 34 ~v~~RP~l~~FL~~l~~~-~ev~i~T~~~~~ya~~v~~~ldp~~~~~~~~~~r~~~~~~~~~-~--~KdL~~l~~~~~~v 109 (159)
T PF03031_consen 34 YVKLRPGLDEFLEELSKH-YEVVIWTSASEEYAEPVLDALDPNGKLFSRRLYRDDCTFDKGS-Y--IKDLSKLGRDLDNV 109 (159)
T ss_dssp EEEE-TTHHHHHHHHHHH-CEEEEE-SS-HHHHHHHHHHHTTTTSSEEEEEEGGGSEEETTE-E--E--GGGSSS-GGGE
T ss_pred eEeeCchHHHHHHHHHHh-ceEEEEEeehhhhhhHHHHhhhhhccccccccccccccccccc-c--ccchHHHhhccccE
Confidence 467899999999999777 99999999999999999999876 4678888877654322111 1 14556667788999
Q ss_pred EEEecChhhhHH
Q 025896 185 FVFEDSVSGIKA 196 (246)
Q Consensus 185 ~~igD~~~Di~~ 196 (246)
++|+|+..-...
T Consensus 110 vivDD~~~~~~~ 121 (159)
T PF03031_consen 110 VIVDDSPRKWAL 121 (159)
T ss_dssp EEEES-GGGGTT
T ss_pred EEEeCCHHHeec
Confidence 999999975433
No 200
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=97.41 E-value=0.00053 Score=56.67 Aligned_cols=90 Identities=16% Similarity=0.178 Sum_probs=72.9
Q ss_pred CcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEEEe
Q 025896 109 PISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEMLKVSKDHTFVFE 188 (246)
Q Consensus 109 ~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~ig 188 (246)
..||+++-+.+||+.|++.+.+|+.++-.+..+.+..|+++|.- .. .|+-...+.++.+-+-.=+.|.|
T Consensus 448 vK~Gi~ERf~elR~MgIkTvM~TGDN~~TAa~IA~EAGVDdfiA---------ea--tPEdK~~~I~~eQ~~grlVAMtG 516 (681)
T COG2216 448 VKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVDDFIA---------EA--TPEDKLALIRQEQAEGRLVAMTG 516 (681)
T ss_pred cchhHHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHHhCchhhhh---------cC--ChHHHHHHHHHHHhcCcEEEEcC
Confidence 46899999999999999999999999999999999999987543 23 34445566777666667788999
Q ss_pred cChhhhHHHHhcCCCEEEEcCC
Q 025896 189 DSVSGIKAGVAAGLPVVGLTTR 210 (246)
Q Consensus 189 D~~~Di~~a~~~G~~~i~v~~~ 210 (246)
|+.||..+..++.+...+ +.|
T Consensus 517 DGTNDAPALAqAdVg~AM-NsG 537 (681)
T COG2216 517 DGTNDAPALAQADVGVAM-NSG 537 (681)
T ss_pred CCCCcchhhhhcchhhhh-ccc
Confidence 999999999999876444 344
No 201
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=97.41 E-value=0.0012 Score=48.53 Aligned_cols=88 Identities=11% Similarity=0.077 Sum_probs=47.0
Q ss_pred ccHHHHHHHHHHcCCeEEEEeCCCHH---HHHHHHHhcCCC----CcceEEEecCCCCCCCCChHHHHHHHHHcC-CCCC
Q 025896 111 SGLDKVKKWIEDRGLKRAAVTNAPRE---NAELMISKLGLS----DFFQVVILGDECERAKPFPDPYFKALEMLK-VSKD 182 (246)
Q Consensus 111 ~~~~~~l~~l~~~g~~i~i~s~~~~~---~~~~~l~~~~l~----~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~-~~~~ 182 (246)
|-....|..+|+. -..|.+-.... .....|...|+. ..|-.+.... .+| ..+...+++.+. ....
T Consensus 137 pre~aaLa~~rEy--seti~~rs~d~~~~~~~~~L~e~glt~v~garf~~v~~as---~gK--g~Aa~~ll~~y~rl~~~ 209 (274)
T COG3769 137 PREQAALAMLREY--SETIIWRSSDERMAQFTARLNERGLTFVHGARFWHVLDAS---AGK--GQAANWLLETYRRLGGA 209 (274)
T ss_pred ChHHhHHHHHHHh--hhheeecccchHHHHHHHHHHhcCceEEeccceEEEeccc---cCc--cHHHHHHHHHHHhcCce
Confidence 4455667777775 33344333222 244566666654 1222232222 222 234455555543 3334
Q ss_pred c-EEEEecChhhhHHHHhcCCCEE
Q 025896 183 H-TFVFEDSVSGIKAGVAAGLPVV 205 (246)
Q Consensus 183 ~-~~~igD~~~Di~~a~~~G~~~i 205 (246)
+ ++.+||++||+.+..-....++
T Consensus 210 r~t~~~GDg~nD~Pl~ev~d~Afi 233 (274)
T COG3769 210 RTTLGLGDGPNDAPLLEVMDYAFI 233 (274)
T ss_pred eEEEecCCCCCcccHHHhhhhhee
Confidence 4 8899999999999886554433
No 202
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=97.39 E-value=0.0019 Score=50.67 Aligned_cols=88 Identities=15% Similarity=0.158 Sum_probs=59.4
Q ss_pred CCcccHHHHHHHHHHcCCeEEEEeCCCH---HHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHcCCCCCcE
Q 025896 108 KPISGLDKVKKWIEDRGLKRAAVTNAPR---ENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEMLKVSKDHT 184 (246)
Q Consensus 108 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~---~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~ 184 (246)
.++||+.++|++|+++|++++++||++. ......++++|+....+.++++. ......+++......++
T Consensus 18 ~~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~~G~~~~~~~i~ts~---------~~~~~~l~~~~~~~~~v 88 (279)
T TIGR01452 18 RVVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFARLGFNGLAEQLFSSA---------LCAARLLRQPPDAPKAV 88 (279)
T ss_pred eeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCChhhEecHH---------HHHHHHHHhhCcCCCEE
Confidence 3678899999999999999999999753 34456778888864445554332 23344555544445678
Q ss_pred EEEecChhhhHHHHhcCCCEE
Q 025896 185 FVFEDSVSGIKAGVAAGLPVV 205 (246)
Q Consensus 185 ~~igD~~~Di~~a~~~G~~~i 205 (246)
+++|+. .....++..|+..+
T Consensus 89 ~~iG~~-~~~~~l~~~g~~~~ 108 (279)
T TIGR01452 89 YVIGEE-GLRAELDAAGIRLA 108 (279)
T ss_pred EEEcCH-HHHHHHHHCCCEEe
Confidence 889975 33455667787643
No 203
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=97.35 E-value=0.0035 Score=43.31 Aligned_cols=96 Identities=16% Similarity=0.109 Sum_probs=61.8
Q ss_pred cCCCcccHHHHHHHHHHc-C-CeEEEEeCCC--------HHHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHH
Q 025896 106 QLKPISGLDKVKKWIEDR-G-LKRAAVTNAP--------RENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALE 175 (246)
Q Consensus 106 ~~~~~~~~~~~l~~l~~~-g-~~i~i~s~~~--------~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~ 175 (246)
...+.|...+-+++|+.. | ..+.++||.- ...+...-++.|+.= . ..++-+|..-....+
T Consensus 59 ~~~Iwp~~l~~ie~~~~vygek~i~v~SNsaG~~~~D~d~s~Ak~le~k~gIpV------l----RHs~kKP~ct~E~~~ 128 (190)
T KOG2961|consen 59 SLAIWPPLLPSIERCKAVYGEKDIAVFSNSAGLTEYDHDDSKAKALEAKIGIPV------L----RHSVKKPACTAEEVE 128 (190)
T ss_pred ccccCchhHHHHHHHHHHhCcccEEEEecCcCccccCCchHHHHHHHHhhCCce------E----eecccCCCccHHHHH
Confidence 456667777888888774 3 6788888762 122333334445541 1 112223323333333
Q ss_pred H-cC----CCCCcEEEEecCh-hhhHHHHhcCCCEEEEcCCC
Q 025896 176 M-LK----VSKDHTFVFEDSV-SGIKAGVAAGLPVVGLTTRN 211 (246)
Q Consensus 176 ~-~~----~~~~~~~~igD~~-~Di~~a~~~G~~~i~v~~~~ 211 (246)
. ++ .++.+++||||.+ .||.+|...|.-.+|..+|-
T Consensus 129 y~~~Nshv~~~se~~~vGDRlfTDI~~aN~mGs~gVw~~~gv 170 (190)
T KOG2961|consen 129 YHFGNSHVCTSSELIMVGDRLFTDIVYANRMGSLGVWTEPGV 170 (190)
T ss_pred HHhCCcccCChhHeEEEccchhhhHhhhhhccceeEEecccc
Confidence 3 23 5789999999999 99999999999999998873
No 204
>KOG2470 consensus Similar to IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=97.34 E-value=0.0005 Score=53.91 Aligned_cols=100 Identities=21% Similarity=0.250 Sum_probs=71.5
Q ss_pred CcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhc---CCCCcceEEEecCCC-----CCCCCC--------------
Q 025896 109 PISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKL---GLSDFFQVVILGDEC-----ERAKPF-------------- 166 (246)
Q Consensus 109 ~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~---~l~~~f~~~~~~~~~-----~~~kp~-------------- 166 (246)
-.|...++|+.|+++|.++.++||++......-...+ .+.++||.++..... ...+|-
T Consensus 241 r~~ql~~fl~kL~~~GKklFLiTNSPysFVd~GM~flvG~~WRdlFDVVIvqA~KP~Fftde~rPfR~~dek~~sl~wdk 320 (510)
T KOG2470|consen 241 RNPQLLAFLRKLKDHGKKLFLITNSPYSFVDKGMRFLVGDDWRDLFDVVIVQANKPEFFTDERRPFRKYDEKRGSLLWDK 320 (510)
T ss_pred ccHHHHHHHHHHHHhcCcEEEEeCCchhhhhcCceeeeCccHHhhhheeEEecCCCcccccccCcchhhcccccchhhhh
Confidence 3467889999999999999999999988776655544 455788887754221 011110
Q ss_pred -----------hHHHHHHHHHcCCCCCcEEEEecCh-hhhHHHH-hcCCCEEEEc
Q 025896 167 -----------PDPYFKALEMLKVSKDHTFVFEDSV-SGIKAGV-AAGLPVVGLT 208 (246)
Q Consensus 167 -----------~~~~~~~~~~~~~~~~~~~~igD~~-~Di~~a~-~~G~~~i~v~ 208 (246)
...+...++--|....+++++||.+ +|+.... ++|+.+-.+-
T Consensus 321 v~klekgkiYy~G~l~~flelt~WrG~~VlYFGDHlySDLad~tlkhgWRTgAII 375 (510)
T KOG2470|consen 321 VDKLEKGKIYYQGNLKSFLELTGWRGPRVLYFGDHLYSDLADLTLKHGWRTGAII 375 (510)
T ss_pred hhhcccCceeeeccHHHHHHHhccCCCeeEEecCcchhhhhhhHhhcccccccch
Confidence 0114456666677888999999999 9998877 8899877663
No 205
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]
Probab=97.25 E-value=0.0022 Score=56.18 Aligned_cols=113 Identities=13% Similarity=0.110 Sum_probs=73.8
Q ss_pred CCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcce--EEEecCCC------------------CCCCCCh
Q 025896 108 KPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQ--VVILGDEC------------------ERAKPFP 167 (246)
Q Consensus 108 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~--~~~~~~~~------------------~~~kp~~ 167 (246)
+.+||+.+.++.|+..|+.+-.+|+.+-..++.+...+|+..-=+ ..+.+.+. ..+.|.-
T Consensus 647 PvRPgV~~AV~~Cq~AGItVRMVTGDNI~TAkAIA~eCGILt~~~d~~~lEG~eFr~~s~ee~~~i~pkl~VlARSSP~D 726 (1034)
T KOG0204|consen 647 PVRPGVPEAVQLCQRAGITVRMVTGDNINTAKAIARECGILTPGGDFLALEGKEFRELSQEERDKIWPKLRVLARSSPND 726 (1034)
T ss_pred CCCCCcHHHHHHHHHcCcEEEEEeCCcHHHHHHHHHHcccccCCCccceecchhhhhcCHHHHHhhhhhheeeecCCCch
Confidence 568999999999999999999999999999999999999863222 11111110 1112211
Q ss_pred HHHHHHHHHcCCCCCcEEEE-ecChhhhHHHHhcCCCEEEEcCCCChhhhhccCCcEEec
Q 025896 168 DPYFKALEMLKVSKDHTFVF-EDSVSGIKAGVAAGLPVVGLTTRNPEHVLLEANPTFLIK 226 (246)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~i-gD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i~ 226 (246)
.+-+.+-+. ...++++| ||+.||-++.++|.+...+--.|. +-.++..|+++-
T Consensus 727 --K~lLVk~L~-~~g~VVAVTGDGTNDaPALkeADVGlAMGIaGT---eVAKEaSDIIi~ 780 (1034)
T KOG0204|consen 727 --KHLLVKGLI-KQGEVVAVTGDGTNDAPALKEADVGLAMGIAGT---EVAKEASDIIIL 780 (1034)
T ss_pred --HHHHHHHHH-hcCcEEEEecCCCCCchhhhhcccchhccccch---hhhhhhCCeEEE
Confidence 111112111 23455555 999999999999997755544443 334456777664
No 206
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=97.21 E-value=0.0031 Score=47.25 Aligned_cols=80 Identities=15% Similarity=0.012 Sum_probs=59.9
Q ss_pred EEEeCCCHHHHHHHHHhcCCCCcc--eEEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEEEecChhhhHHHHhcCCCEE
Q 025896 128 AAVTNAPRENAELMISKLGLSDFF--QVVILGDECERAKPFPDPYFKALEMLKVSKDHTFVFEDSVSGIKAGVAAGLPVV 205 (246)
Q Consensus 128 ~i~s~~~~~~~~~~l~~~~l~~~f--~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i 205 (246)
++||++...-.-.++--.++.++| +.|+++..+ .+...|+++.+++|-+.-..++|||+...-.+|+..+++++
T Consensus 179 vLVTs~qLVPaLaKcLLy~L~~~f~ieNIYSa~kv----GK~~cFe~I~~Rfg~p~~~f~~IGDG~eEe~aAk~l~wPFw 254 (274)
T TIGR01658 179 VLVTSGQLIPSLAKCLLFRLDTIFRIENVYSSIKV----GKLQCFKWIKERFGHPKVRFCAIGDGWEECTAAQAMNWPFV 254 (274)
T ss_pred EEEEcCccHHHHHHHHHhccCCccccccccchhhc----chHHHHHHHHHHhCCCCceEEEeCCChhHHHHHHhcCCCeE
Confidence 556666544333334444777766 556655443 26689999999999988889999999999999999999999
Q ss_pred EEcCCC
Q 025896 206 GLTTRN 211 (246)
Q Consensus 206 ~v~~~~ 211 (246)
-++...
T Consensus 255 ~I~~h~ 260 (274)
T TIGR01658 255 KIDLHP 260 (274)
T ss_pred EeecCC
Confidence 996654
No 207
>KOG0210 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=96.84 E-value=0.003 Score=54.22 Aligned_cols=48 Identities=13% Similarity=0.190 Sum_probs=33.9
Q ss_pred CcEEEEecChhhhHHHHhcCCCEEEEcCCCChhhhhccCCcEEecCCCChh
Q 025896 182 DHTFVFEDSVSGIKAGVAAGLPVVGLTTRNPEHVLLEANPTFLIKDYDDPK 232 (246)
Q Consensus 182 ~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i~~~~el~ 232 (246)
.++..|||+-||+.|.+.|.++ |++....+ .+....||+-|..+.-+.
T Consensus 782 krvc~IGDGGNDVsMIq~A~~G-iGI~gkEG--kQASLAADfSItqF~Hv~ 829 (1051)
T KOG0210|consen 782 KRVCAIGDGGNDVSMIQAADVG-IGIVGKEG--KQASLAADFSITQFSHVS 829 (1051)
T ss_pred ceEEEEcCCCccchheeecccc-eeeecccc--cccchhccccHHHHHHHH
Confidence 6789999999999999998765 34433222 223357888888777644
No 208
>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=96.79 E-value=0.026 Score=45.61 Aligned_cols=101 Identities=12% Similarity=0.091 Sum_probs=72.4
Q ss_pred cccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhc---CCCCcceEEEecCC---------------CC----------
Q 025896 110 ISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKL---GLSDFFQVVILGDE---------------CE---------- 161 (246)
Q Consensus 110 ~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~---~l~~~f~~~~~~~~---------------~~---------- 161 (246)
.+....+|..+++.|..+.++||.+..+.......+ +...+||.++.... ..
T Consensus 200 d~~~v~~l~~~r~sGKk~fl~Tns~~~ytd~~mt~~~~~dW~~yfd~v~~~a~Kp~ff~e~~vlreV~t~~g~l~~g~~~ 279 (424)
T KOG2469|consen 200 DGTIVPLLSMLRDSGKKTFLHTNSDWDYTDIFMAFHYGFDWETYFDLVETRAAKPGFFHEGTVLREVEPQEGLLKNGDNT 279 (424)
T ss_pred cCccccchHHHHhhccceEEeeccccchhhHHHHHHhCCCcceeEEEEEEeccCCccccccceeeeeccccccccccccC
Confidence 344566999999999999999999887776666543 56688888876531 01
Q ss_pred -----CCCCChHHHHHHHHHcCCCCCcEEEEecCh-hhhH-HHHhcCCCEEEEcCC
Q 025896 162 -----RAKPFPDPYFKALEMLKVSKDHTFVFEDSV-SGIK-AGVAAGLPVVGLTTR 210 (246)
Q Consensus 162 -----~~kp~~~~~~~~~~~~~~~~~~~~~igD~~-~Di~-~a~~~G~~~i~v~~~ 210 (246)
.+.+.+.....++..++....+++++||+- -|+. .-+.-|+.++.+...
T Consensus 280 ~p~e~~~~ySggs~~~~~~~l~~~g~diLy~gdHi~~dvl~skk~~~wrt~lv~pe 335 (424)
T KOG2469|consen 280 GPLEQGGVYSGGSLKTVETSMKVKGKDILYGGDHIWGDVLVSKKRRGWRTVLVAPE 335 (424)
T ss_pred CcchhcccCCcchHHHHHHHhcccccceeecccceeeeEEecceecceEEEEEehh
Confidence 122233456777888888889999999999 5764 445568888888544
No 209
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=96.52 E-value=0.016 Score=46.40 Aligned_cols=95 Identities=16% Similarity=0.163 Sum_probs=60.8
Q ss_pred CCcccHHHHHHHHHHcCCeEEEEeCCCH------------HHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHH
Q 025896 108 KPISGLDKVKKWIEDRGLKRAAVTNAPR------------ENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALE 175 (246)
Q Consensus 108 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~------------~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~ 175 (246)
.+++.+..-|+.|.+.|+.++|.||... ..+..+...+++. |...........+||...++....+
T Consensus 104 ~l~~~vp~Klktl~~~g~~l~iftnq~~i~r~~~~~~~f~~Ki~~i~anl~vP--i~~~~A~~~~~yRKP~tGMwe~~~~ 181 (422)
T KOG2134|consen 104 ILFPEVPSKLKTLYQDGIKLFIFTNQNGIARGKLELEEFKKKIKAIVANLGVP--IQLLAAIIKGKYRKPSTGMWEFLKR 181 (422)
T ss_pred eeccccchhhhhhccCCeEEEEEecccccccCcchHHHHHHHHHHHHHhcCCc--eEEeeeccCCcccCcchhHHHHHHH
Confidence 3456666778889999999999987632 2244455555554 3332222333678998888887776
Q ss_pred HcC----CCCCcEEEEecC---------------hhhhHHHHhcCCCE
Q 025896 176 MLK----VSKDHTFVFEDS---------------VSGIKAGVAAGLPV 204 (246)
Q Consensus 176 ~~~----~~~~~~~~igD~---------------~~Di~~a~~~G~~~ 204 (246)
.++ ++...+.|+||- ..|+.-|.++|+.+
T Consensus 182 ~~nd~~~Isek~s~fvgdaagr~~~~~~~kkd~S~~D~~FAaN~gvkF 229 (422)
T KOG2134|consen 182 LENDSVEISEKASIFVGDAAGRPLDALRRKKDHSSADRKFAANAGVKF 229 (422)
T ss_pred HhhccceeeechhhhhhhhccCccccccCcccccHHHHHHHHhcCCcc
Confidence 543 344556677763 35777888888754
No 210
>PRK10444 UMP phosphatase; Provisional
Probab=96.34 E-value=0.05 Score=41.94 Aligned_cols=50 Identities=20% Similarity=0.209 Sum_probs=38.2
Q ss_pred CCcccHHHHHHHHHHcCCeEEEEeCCCHHH---HHHHHHhcCCCCcceEEEec
Q 025896 108 KPISGLDKVKKWIEDRGLKRAAVTNAPREN---AELMISKLGLSDFFQVVILG 157 (246)
Q Consensus 108 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~---~~~~l~~~~l~~~f~~~~~~ 157 (246)
.+.|++.+++++|++.|.+++++||+.... ....|+.+|+.---+.++++
T Consensus 17 ~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~G~~~~~~~i~ts 69 (248)
T PRK10444 17 VAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFATAGVDVPDSVFYTS 69 (248)
T ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCCHhhEecH
Confidence 468999999999999999999999997643 45556667875334555554
No 211
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=96.25 E-value=0.017 Score=43.85 Aligned_cols=131 Identities=13% Similarity=0.151 Sum_probs=66.3
Q ss_pred ccCCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEe----cCCC----CCCCCChHHHH---HH
Q 025896 105 EQLKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVIL----GDEC----ERAKPFPDPYF---KA 173 (246)
Q Consensus 105 ~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~----~~~~----~~~kp~~~~~~---~~ 173 (246)
..+.+++|+.++++.|+++++|+.|.|++--..+...+++.+...---.+++ .++. +..-|--..|. .+
T Consensus 87 s~i~LRdg~~~~f~~L~~~~IP~lIFSAGlgdvI~~vL~q~~~~~~Nv~VvSN~M~Fd~~g~l~gF~~~lIH~~NKn~~~ 166 (246)
T PF05822_consen 87 SDIMLRDGVEEFFDKLEEHNIPLLIFSAGLGDVIEEVLRQAGVFHPNVKVVSNFMDFDEDGVLVGFKGPLIHTFNKNESA 166 (246)
T ss_dssp S---B-BTHHHHHHHHHCTT--EEEEEEEEHHHHHHHHHHTT--BTTEEEEEE-EEE-TTSBEEEE-SS---TT-HHHHH
T ss_pred cchhhhcCHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHcCCCCCCeEEEeeeEEECCcceEeecCCCceEEeeCCccc
Confidence 3578999999999999999999999999999999999998865421111111 1111 11222111111 11
Q ss_pred HH---Hc-CC-CCCcEEEEecChhhhHHHHhc-CCC---EEEEcCCCChhhhh--ccCCcEEecCCCChhhHH
Q 025896 174 LE---ML-KV-SKDHTFVFEDSVSGIKAGVAA-GLP---VVGLTTRNPEHVLL--EANPTFLIKDYDDPKLWS 235 (246)
Q Consensus 174 ~~---~~-~~-~~~~~~~igD~~~Di~~a~~~-G~~---~i~v~~~~~~~~~~--~~~~~~~i~~~~el~~~~ 235 (246)
++ .+ .+ ...+++..||+.-|+.|+..+ ... .|++........+. ...=|.|+-+-..+.++.
T Consensus 167 l~~~~~~~~~~~R~NvlLlGDslgD~~Ma~G~~~~~~~lkIGFLn~~ve~~l~~Y~~~yDIVlv~D~tm~v~~ 239 (246)
T PF05822_consen 167 LEDSPYFKQLKKRTNVLLLGDSLGDLHMADGVPDEENVLKIGFLNDKVEENLEKYLEAYDIVLVDDQTMDVPN 239 (246)
T ss_dssp HTTHHHHHCTTT--EEEEEESSSGGGGTTTT-S--SEEEEEEEE-SSHHHHHHHHHCCSSEEEET--B-HHHH
T ss_pred ccCchHHHHhccCCcEEEecCccCChHhhcCCCccccEEEEEecccCHHHHHHHHHhcCCEEEECCCCchHHH
Confidence 21 11 23 347799999999999998776 333 44444443222121 224456665555544443
No 212
>KOG0206 consensus P-type ATPase [General function prediction only]
Probab=96.19 E-value=0.012 Score=54.10 Aligned_cols=41 Identities=20% Similarity=0.100 Sum_probs=33.6
Q ss_pred CCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCC
Q 025896 107 LKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGL 147 (246)
Q Consensus 107 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l 147 (246)
.++.+|+.+.++.|++.|++++++|+...+.+-.+.-.+++
T Consensus 650 DkLQdgVPetI~~L~~AGIKIWVLTGDK~ETAiNIg~sC~L 690 (1151)
T KOG0206|consen 650 DKLQDGVPETIAKLAQAGIKIWVLTGDKQETAINIGYSCRL 690 (1151)
T ss_pred chhccCchHHHHHHHHcCCEEEEEcCcHHHHHHHHHHhhcC
Confidence 47889999999999999999999999877766655555443
No 213
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=95.96 E-value=0.021 Score=44.04 Aligned_cols=49 Identities=16% Similarity=0.237 Sum_probs=40.5
Q ss_pred CcccHHHHHHHHHHcCCeEEEEeCC---CHHHHHHHHHhcCCCCcceEEEec
Q 025896 109 PISGLDKVKKWIEDRGLKRAAVTNA---PRENAELMISKLGLSDFFQVVILG 157 (246)
Q Consensus 109 ~~~~~~~~l~~l~~~g~~i~i~s~~---~~~~~~~~l~~~~l~~~f~~~~~~ 157 (246)
+.|++.++|++|+++|++++++||+ +...+...++.+|+....+.++++
T Consensus 18 ~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~g~~~~~~~iit~ 69 (249)
T TIGR01457 18 RIPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASFDIPATLETVFTA 69 (249)
T ss_pred eCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCChhhEeeH
Confidence 4568999999999999999999984 466778888889987666777765
No 214
>KOG3128 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.76 E-value=0.041 Score=41.59 Aligned_cols=95 Identities=8% Similarity=0.057 Sum_probs=61.6
Q ss_pred cCCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEec----CCC----CCCCC-------ChHHH
Q 025896 106 QLKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILG----DEC----ERAKP-------FPDPY 170 (246)
Q Consensus 106 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~----~~~----~~~kp-------~~~~~ 170 (246)
.+.+.+|+.++...|+.+++++.|.|.+--..++.++.+......+-.+++. +.. +...| +...+
T Consensus 136 ~i~lReg~~~ff~~L~~~~IP~~iFSAGigdiiEev~~q~~~~~pn~k~vSN~~~F~edg~l~gF~~~Lihtfnkn~~v~ 215 (298)
T KOG3128|consen 136 NIALREGYEEFFEALQAHEIPLLIFSAGIGDIIEEVTRQKLVLHPNVKFVSNYMDFDEDGNLCGFSQPLIHTFNKNSSVL 215 (298)
T ss_pred hHHHHHHHHHHHHHHHhCCCceEEEecchHHHHHHHHHHHhccCccHHhhhhhhhhcccchhhhhhHHHHHHHccchHHH
Confidence 4567788999999999999999999999888888777654332212111111 111 11222 12233
Q ss_pred HHHHHHcCC--CCCcEEEEecChhhhHHHHhc
Q 025896 171 FKALEMLKV--SKDHTFVFEDSVSGIKAGVAA 200 (246)
Q Consensus 171 ~~~~~~~~~--~~~~~~~igD~~~Di~~a~~~ 200 (246)
+...+.+.. ...++++.||+.-|+.|+..+
T Consensus 216 ~~~s~yf~~~~~~~nVillGdsigdl~ma~gv 247 (298)
T KOG3128|consen 216 QNESEYFHQLAGRVNVILLGDSIGDLHMADGV 247 (298)
T ss_pred HhhhHHHhhccCCceEEEeccccccchhhcCC
Confidence 344444443 446799999999999999875
No 215
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=95.71 E-value=0.017 Score=44.85 Aligned_cols=50 Identities=20% Similarity=0.209 Sum_probs=39.3
Q ss_pred CCcccHHHHHHHHHHcCCeEEEEeCCCHH---HHHHHHHhcCCCCcceEEEec
Q 025896 108 KPISGLDKVKKWIEDRGLKRAAVTNAPRE---NAELMISKLGLSDFFQVVILG 157 (246)
Q Consensus 108 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~---~~~~~l~~~~l~~~f~~~~~~ 157 (246)
.+.|++.+++++|+++|++++++||++.. .....++.+|+.--.+.++++
T Consensus 21 ~~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~~~~~~i~ts 73 (257)
T TIGR01458 21 VAVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFDISEDEVFTP 73 (257)
T ss_pred CcCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCCCCCHHHeEcH
Confidence 36889999999999999999999997654 466777888876334556654
No 216
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=95.66 E-value=0.12 Score=39.58 Aligned_cols=72 Identities=17% Similarity=0.208 Sum_probs=48.7
Q ss_pred CCeEEEEeCCCHHHHHHHHHhc---CCCCcceEEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEEEecChhhhHHHHhc
Q 025896 124 GLKRAAVTNAPRENAELMISKL---GLSDFFQVVILGDECERAKPFPDPYFKALEMLKVSKDHTFVFEDSVSGIKAGVAA 200 (246)
Q Consensus 124 g~~i~i~s~~~~~~~~~~l~~~---~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~igD~~~Di~~a~~~ 200 (246)
-+++++||..+.....+.++.+ |+. +|..+.-. +.++ ..+++.++- -+|++|....++.|. .
T Consensus 186 piRtalVTAR~apah~RvI~TLr~Wgv~--vDEafFLg----G~~K----~~vL~~~~p----hIFFDDQ~~H~~~a~-~ 250 (264)
T PF06189_consen 186 PIRTALVTARSAPAHERVIRTLRSWGVR--VDEAFFLG----GLPK----GPVLKAFRP----HIFFDDQDGHLESAS-K 250 (264)
T ss_pred ceEEEEEEcCCCchhHHHHHHHHHcCCc--HhHHHHhC----CCch----hHHHHhhCC----CEeecCchhhhhHhh-c
Confidence 4889999998876666655544 554 33322111 2233 245665443 489999999999998 8
Q ss_pred CCCEEEEcCC
Q 025896 201 GLPVVGLTTR 210 (246)
Q Consensus 201 G~~~i~v~~~ 210 (246)
++++..|..|
T Consensus 251 ~vps~hVP~g 260 (264)
T PF06189_consen 251 VVPSGHVPYG 260 (264)
T ss_pred CCCEEeccCC
Confidence 8999999776
No 217
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=95.66 E-value=0.059 Score=36.86 Aligned_cols=99 Identities=14% Similarity=0.158 Sum_probs=60.1
Q ss_pred cCCCcccHHHHHHHHHHcCCeEEEEeCC--CHHHHH----HHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHcCC
Q 025896 106 QLKPISGLDKVKKWIEDRGLKRAAVTNA--PRENAE----LMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEMLKV 179 (246)
Q Consensus 106 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~--~~~~~~----~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~ 179 (246)
.+...|++.+.+++|-+. +.++|+|.. .+.... ...+.+..-++-..++++. .+.-
T Consensus 66 nL~V~p~aq~v~keLt~~-y~vYivtaamdhp~s~~dK~eWl~E~FPFi~~qn~vfCgn-Kniv---------------- 127 (180)
T COG4502 66 NLGVQPFAQTVLKELTSI-YNVYIVTAAMDHPKSCEDKGEWLKEKFPFISYQNIVFCGN-KNIV---------------- 127 (180)
T ss_pred hcCccccHHHHHHHHHhh-heEEEEEeccCCchhHHHHHHHHHHHCCCCChhhEEEecC-CCeE----------------
Confidence 467789999999999998 999999987 333333 3334444444334444332 1111
Q ss_pred CCCcEEEEecChhhhHHHHhcCCCEEEEcCCCChhhhhccCCcEEecCCCCh
Q 025896 180 SKDHTFVFEDSVSGIKAGVAAGLPVVGLTTRNPEHVLLEANPTFLIKDYDDP 231 (246)
Q Consensus 180 ~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i~~~~el 231 (246)
.--++|+|++..++..+ |.+ |++...++..+ .-...+.++.|.
T Consensus 128 --kaDilIDDnp~nLE~F~--G~k-IlFdA~HN~ne----nRF~Rv~~W~e~ 170 (180)
T COG4502 128 --KADILIDDNPLNLENFK--GNK-ILFDAHHNKNE----NRFVRVRDWYEA 170 (180)
T ss_pred --EeeEEecCCchhhhhcc--Cce-EEEecccccCc----cceeeeccHHHH
Confidence 11368999999888765 443 56655544433 234567777773
No 218
>KOG0209 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=94.85 E-value=0.076 Score=47.03 Aligned_cols=41 Identities=12% Similarity=0.076 Sum_probs=34.5
Q ss_pred CCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCC
Q 025896 107 LKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGL 147 (246)
Q Consensus 107 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l 147 (246)
.++.+++++.+++|++.+.+++.+|+.++-.+-.+.+.+|+
T Consensus 674 CPlK~Ds~~~I~el~~SSH~vvMITGDnpLTAchVak~v~i 714 (1160)
T KOG0209|consen 674 CPLKPDSKKTIKELNNSSHRVVMITGDNPLTACHVAKEVGI 714 (1160)
T ss_pred CCCCccHHHHHHHHhccCceEEEEeCCCccchheehheeee
Confidence 35779999999999999999999999988777766666654
No 219
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=94.74 E-value=0.47 Score=36.29 Aligned_cols=86 Identities=17% Similarity=0.156 Sum_probs=53.1
Q ss_pred CCCcccHHHHHHHHHHcCCeEEEEeCCC---HHHHHHHHHh-cCCCCcceEEEecCCCCCCCCChHHHHHHHHHcCCCCC
Q 025896 107 LKPISGLDKVKKWIEDRGLKRAAVTNAP---RENAELMISK-LGLSDFFQVVILGDECERAKPFPDPYFKALEMLKVSKD 182 (246)
Q Consensus 107 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~---~~~~~~~l~~-~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~ 182 (246)
..++|++.+.|+.++++|+++.++||+. .......+.. +|+.--.+.++++.. .....+++.. +..
T Consensus 13 ~~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g~~~~~~~iits~~---------~~~~~l~~~~-~~~ 82 (236)
T TIGR01460 13 HKPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGVDVSPDQIITSGS---------VTKDLLRQRF-EGE 82 (236)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhcCCCCCHHHeeeHHH---------HHHHHHHHhC-CCC
Confidence 3457899999999999999999999775 3444455655 677544566654432 1222333222 224
Q ss_pred cEEEEecChhhhHHHHhcCCC
Q 025896 183 HTFVFEDSVSGIKAGVAAGLP 203 (246)
Q Consensus 183 ~~~~igD~~~Di~~a~~~G~~ 203 (246)
.++++|.. ...+.++..|+.
T Consensus 83 ~v~v~G~~-~~~~~l~~~g~~ 102 (236)
T TIGR01460 83 KVYVIGVG-ELRESLEGLGFR 102 (236)
T ss_pred EEEEECCH-HHHHHHHHcCCc
Confidence 57777753 445555666653
No 220
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=94.70 E-value=0.11 Score=40.21 Aligned_cols=37 Identities=11% Similarity=0.009 Sum_probs=25.7
Q ss_pred CCCcccHHHHHHHHHHcC-CeEEEEeCCCHHHHHHHHH
Q 025896 107 LKPISGLDKVKKWIEDRG-LKRAAVTNAPRENAELMIS 143 (246)
Q Consensus 107 ~~~~~~~~~~l~~l~~~g-~~i~i~s~~~~~~~~~~l~ 143 (246)
..+.+++..+|..|..+. ..++|+|+.+.......+.
T Consensus 39 a~~~~~l~~lL~~Las~~~~~v~iiSGR~~~~l~~~~~ 76 (266)
T COG1877 39 AVPDDRLLSLLQDLASDPRNVVAIISGRSLAELERLFG 76 (266)
T ss_pred cCCCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHhcC
Confidence 456667778888887762 2378888887777776665
No 221
>KOG3107 consensus Predicted haloacid dehalogenase-like hydrolase (eyes absent) [General function prediction only]
Probab=94.63 E-value=0.15 Score=40.89 Aligned_cols=79 Identities=16% Similarity=0.115 Sum_probs=54.2
Q ss_pred EEEEeCCCHHHHHHHHHhcCCCCcc--eEEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEEEecChhhhHHHHhcCCCE
Q 025896 127 RAAVTNAPRENAELMISKLGLSDFF--QVVILGDECERAKPFPDPYFKALEMLKVSKDHTFVFEDSVSGIKAGVAAGLPV 204 (246)
Q Consensus 127 i~i~s~~~~~~~~~~l~~~~l~~~f--~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~ 204 (246)
-+++|+....-.-.++--.||...| +.|++....+ +...|+++.+++|- .-..++|||+...-.+|++..|++
T Consensus 373 nVlvTttqLipalaKvLL~gLg~~fpiENIYSa~kiG----KescFerI~~RFg~-K~~yvvIgdG~eee~aAK~ln~Pf 447 (468)
T KOG3107|consen 373 NVLVTTTQLIPALAKVLLYGLGSSFPIENIYSATKIG----KESCFERIQSRFGR-KVVYVVIGDGVEEEQAAKALNMPF 447 (468)
T ss_pred EEEEeccchhHHHHHHHHHhcCCcccchhhhhhhhcc----HHHHHHHHHHHhCC-ceEEEEecCcHHHHHHHHhhCCce
Confidence 4556666443332333333555444 5666554433 56789999999998 456788999999999999999998
Q ss_pred EEEcCC
Q 025896 205 VGLTTR 210 (246)
Q Consensus 205 i~v~~~ 210 (246)
.-++..
T Consensus 448 wrI~~h 453 (468)
T KOG3107|consen 448 WRISSH 453 (468)
T ss_pred EeeccC
Confidence 888543
No 222
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=94.58 E-value=0.097 Score=40.99 Aligned_cols=42 Identities=21% Similarity=0.344 Sum_probs=36.9
Q ss_pred cccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcc
Q 025896 110 ISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFF 151 (246)
Q Consensus 110 ~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f 151 (246)
.+.+.++|++|++.|++++++|+.+...+...++.+++..++
T Consensus 23 ~~~~~~ai~~l~~~Gi~~~iaTgR~~~~~~~~~~~l~l~~~~ 64 (273)
T PRK00192 23 YEPAKPALKALKEKGIPVIPCTSKTAAEVEVLRKELGLEDPF 64 (273)
T ss_pred cHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCCCE
Confidence 355788999999999999999999999999999999987544
No 223
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=94.37 E-value=0.33 Score=35.81 Aligned_cols=40 Identities=28% Similarity=0.413 Sum_probs=33.1
Q ss_pred CcccHHHHHHHHHHcCCeEEEEeCCCHH---HHHHHHHhcCCC
Q 025896 109 PISGLDKVKKWIEDRGLKRAAVTNAPRE---NAELMISKLGLS 148 (246)
Q Consensus 109 ~~~~~~~~l~~l~~~g~~i~i~s~~~~~---~~~~~l~~~~l~ 148 (246)
..||+.+.|++|++++..+-.+||.... .....|.++|+.
T Consensus 24 avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL~rlgf~ 66 (262)
T KOG3040|consen 24 AVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHERLQRLGFD 66 (262)
T ss_pred cCCCHHHHHHHHHhcCceEEEEecCcchhHHHHHHHHHHhCCC
Confidence 6799999999999998999999998654 466677777765
No 224
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=94.10 E-value=0.16 Score=38.50 Aligned_cols=40 Identities=18% Similarity=0.218 Sum_probs=35.6
Q ss_pred cccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCC
Q 025896 110 ISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSD 149 (246)
Q Consensus 110 ~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~ 149 (246)
.+.+.++|++|+++|++++++|+.+...+...++.+|+..
T Consensus 17 ~~~~~~ai~~l~~~G~~~vi~TgR~~~~~~~~~~~lg~~~ 56 (225)
T TIGR02461 17 PGPAREALEELKDLGFPIVFVSSKTRAEQEYYREELGVEP 56 (225)
T ss_pred chHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCCC
Confidence 3468899999999999999999999999999999999754
No 225
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=93.81 E-value=0.16 Score=38.19 Aligned_cols=41 Identities=17% Similarity=0.102 Sum_probs=35.9
Q ss_pred CcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCC
Q 025896 109 PISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSD 149 (246)
Q Consensus 109 ~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~ 149 (246)
+.+...+.|++|++.|++++++|+++...++..++.+++..
T Consensus 19 i~~~~~~~i~~l~~~g~~~~~~TGR~~~~~~~~~~~l~~~~ 59 (215)
T TIGR01487 19 ISERAIEAIRKAEKKGIPVSLVTGNTVPFARALAVLIGTSG 59 (215)
T ss_pred cCHHHHHHHHHHHHCCCEEEEEcCCcchhHHHHHHHhCCCC
Confidence 44567899999999999999999999999999888888763
No 226
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=93.52 E-value=0.29 Score=38.12 Aligned_cols=41 Identities=10% Similarity=0.161 Sum_probs=35.4
Q ss_pred CcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCC
Q 025896 109 PISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSD 149 (246)
Q Consensus 109 ~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~ 149 (246)
+.+...+.|++++++|++++++|+++...+...++.+++..
T Consensus 21 i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~ 61 (270)
T PRK10513 21 ISPAVKQAIAAARAKGVNVVLTTGRPYAGVHRYLKELHMEQ 61 (270)
T ss_pred cCHHHHHHHHHHHHCCCEEEEecCCChHHHHHHHHHhCCCC
Confidence 34556789999999999999999999999999999988753
No 227
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=93.38 E-value=0.23 Score=37.39 Aligned_cols=36 Identities=17% Similarity=0.251 Sum_probs=33.6
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCC
Q 025896 113 LDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLS 148 (246)
Q Consensus 113 ~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~ 148 (246)
..+.|++|++.|++++++|+++...+...++.+++.
T Consensus 21 ~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l~~~ 56 (221)
T TIGR02463 21 AAPWLTRLQEAGIPVILCTSKTAAEVEYLQKALGLT 56 (221)
T ss_pred HHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 678999999999999999999999999999999876
No 228
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=93.34 E-value=0.23 Score=38.85 Aligned_cols=42 Identities=10% Similarity=0.067 Sum_probs=36.7
Q ss_pred CcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCc
Q 025896 109 PISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDF 150 (246)
Q Consensus 109 ~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~ 150 (246)
+.+...+.|++|+++|++++++|+++...+...++.+++..+
T Consensus 20 i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~ 61 (272)
T PRK15126 20 LGEKTLSTLARLRERDITLTFATGRHVLEMQHILGALSLDAY 61 (272)
T ss_pred CCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHcCCCCc
Confidence 455577999999999999999999999999999999988643
No 229
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=93.30 E-value=0.23 Score=37.64 Aligned_cols=42 Identities=14% Similarity=-0.075 Sum_probs=35.9
Q ss_pred CcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCc
Q 025896 109 PISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDF 150 (246)
Q Consensus 109 ~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~ 150 (246)
+.+...+.|++|++.|++++++|+++...+...+..+++..+
T Consensus 21 i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~ 62 (230)
T PRK01158 21 LSLKAVEAIRKAEKLGIPVILATGNVLCFARAAAKLIGTSGP 62 (230)
T ss_pred cCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCCCc
Confidence 445677899999999999999999999988888888887643
No 230
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=93.20 E-value=0.27 Score=38.04 Aligned_cols=41 Identities=17% Similarity=0.321 Sum_probs=35.8
Q ss_pred CcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCC
Q 025896 109 PISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSD 149 (246)
Q Consensus 109 ~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~ 149 (246)
+.+...+.|++|+++|++++++|+++...+...++.+++..
T Consensus 17 i~~~~~~~i~~l~~~G~~~~iaTGR~~~~~~~~~~~~~~~~ 57 (256)
T TIGR00099 17 ISPSTKEALAKLREKGIKVVLATGRPYKEVKNILKELGLDT 57 (256)
T ss_pred cCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCCC
Confidence 44567899999999999999999999999999999988763
No 231
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=93.17 E-value=0.38 Score=41.89 Aligned_cols=84 Identities=14% Similarity=0.109 Sum_probs=59.6
Q ss_pred cCCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCC-Ccc-eEEEecCCCCCCCCChHHHHHHHHHcCCCC--
Q 025896 106 QLKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLS-DFF-QVVILGDECERAKPFPDPYFKALEMLKVSK-- 181 (246)
Q Consensus 106 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~-~~f-~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~-- 181 (246)
.+++.|++.+||+++.+. +.+.|+|.+.+.++..+++-+.-. .+| |.|++.++.+..| .+.-....|
T Consensus 199 ~vKlRP~~~efL~~~skl-femhVyTmg~R~YA~~i~~liDP~~~lF~dRIisrde~~~~k--------t~dL~~~~p~g 269 (635)
T KOG0323|consen 199 LVKLRPFVHEFLKEANKL-FEMHVYTMGTRDYALEIAKLIDPEGKYFGDRIISRDESPFFK--------TLDLVLLFPCG 269 (635)
T ss_pred EEEeCccHHHHHHHHHhh-ceeEEEeccchHHHHHHHHHhCCCCccccceEEEecCCCccc--------ccccccCCCCC
Confidence 468899999999999988 999999999999999999887544 456 7777777633222 222222333
Q ss_pred -CcEEEEecChhhhHHHH
Q 025896 182 -DHTFVFEDSVSGIKAGV 198 (246)
Q Consensus 182 -~~~~~igD~~~Di~~a~ 198 (246)
..++.|+|+.+=.....
T Consensus 270 ~smvvIIDDr~dVW~~~~ 287 (635)
T KOG0323|consen 270 DSMVVIIDDRSDVWPDHK 287 (635)
T ss_pred CccEEEEeCccccccCCC
Confidence 33788888775444444
No 232
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=93.10 E-value=0.3 Score=38.39 Aligned_cols=43 Identities=14% Similarity=0.119 Sum_probs=37.3
Q ss_pred CCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCc
Q 025896 108 KPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDF 150 (246)
Q Consensus 108 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~ 150 (246)
..++.+.+.|++|+++|++++++|+.....+....+.+++...
T Consensus 18 ~~~~~a~~aL~~Lk~~GI~vVlaTGRt~~ev~~l~~~Lgl~~p 60 (302)
T PRK12702 18 NSYGAARQALAALERRSIPLVLYSLRTRAQLEHLCRQLRLEHP 60 (302)
T ss_pred cCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCe
Confidence 3455578999999999999999999999999999999998753
No 233
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=92.91 E-value=0.54 Score=37.83 Aligned_cols=85 Identities=16% Similarity=0.166 Sum_probs=56.2
Q ss_pred CcccHHHHHHHHHHc----CCeEEEEeCCC---HHHHHH-HHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHcCCC
Q 025896 109 PISGLDKVKKWIEDR----GLKRAAVTNAP---RENAEL-MISKLGLSDFFQVVILGDECERAKPFPDPYFKALEMLKVS 180 (246)
Q Consensus 109 ~~~~~~~~l~~l~~~----g~~i~i~s~~~---~~~~~~-~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~ 180 (246)
+.|++.++++.|+.. |+++.++||+. ...... ..+++|+.--.+.++++. .....++++++
T Consensus 17 ~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~l~~~lG~~~~~~~i~~s~---------~~~~~ll~~~~-- 85 (321)
T TIGR01456 17 PIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEEISSLLGVDVSPLQVIQSH---------SPYKSLVNKYE-- 85 (321)
T ss_pred ccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHHHHHHcCCCCCHHHHHhhh---------HHHHHHHHHcC--
Confidence 478899999999998 99999999986 344333 347788753233333321 13345555542
Q ss_pred CCcEEEEecChhhhHHHHhcCCCEEE
Q 025896 181 KDHTFVFEDSVSGIKAGVAAGLPVVG 206 (246)
Q Consensus 181 ~~~~~~igD~~~Di~~a~~~G~~~i~ 206 (246)
..+++||.+- -.+.++..|+..+.
T Consensus 86 -~~v~viG~~~-~~~~l~~~G~~~vv 109 (321)
T TIGR01456 86 -KRILAVGTGS-VRGVAEGYGFQNVV 109 (321)
T ss_pred -CceEEEeChH-HHHHHHHcCCcccc
Confidence 2678888764 56777788987553
No 234
>PRK10976 putative hydrolase; Provisional
Probab=92.76 E-value=0.29 Score=38.05 Aligned_cols=42 Identities=12% Similarity=0.144 Sum_probs=36.1
Q ss_pred CcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCc
Q 025896 109 PISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDF 150 (246)
Q Consensus 109 ~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~ 150 (246)
+.+...+.|++++++|++++++|+++...+...++.+++..+
T Consensus 20 is~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~ 61 (266)
T PRK10976 20 LSPYAKETLKLLTARGIHFVFATGRHHVDVGQIRDNLEIKSY 61 (266)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCCCCe
Confidence 445577999999999999999999999999989999887643
No 235
>KOG0203 consensus Na+/K+ ATPase, alpha subunit [Inorganic ion transport and metabolism]
Probab=92.48 E-value=0.068 Score=47.36 Aligned_cols=101 Identities=18% Similarity=0.077 Sum_probs=62.1
Q ss_pred CCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCC----c-----------ceEEEecC-----CCCCCCC-
Q 025896 107 LKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSD----F-----------FQVVILGD-----ECERAKP- 165 (246)
Q Consensus 107 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~----~-----------f~~~~~~~-----~~~~~kp- 165 (246)
.+|...+.+....|+..|++++.+|+..+..+.......|+-. . .+.+...+ ..+..+|
T Consensus 589 dPPR~~vP~Av~~CrsAGIkvimVTgdhpiTAkAiA~~vgIi~~~~et~e~~a~r~~~~v~~vn~~~a~a~VihG~eL~~ 668 (1019)
T KOG0203|consen 589 DPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKSVGIISEGSETVEDIAKRLNIPVEQVNSRDAKAAVIHGSELPD 668 (1019)
T ss_pred CCCcccCchhhhhhhhhCceEEEEecCccchhhhhhhheeeecCCchhhhhhHHhcCCcccccCccccceEEEecccccc
Confidence 3567778899999999999999999987777666666555311 0 11111000 0011222
Q ss_pred -ChHHHHHHHHHcC------CCC-------------Cc-EEEEecChhhhHHHHhcCCCEEEE
Q 025896 166 -FPDPYFKALEMLK------VSK-------------DH-TFVFEDSVSGIKAGVAAGLPVVGL 207 (246)
Q Consensus 166 -~~~~~~~~~~~~~------~~~-------------~~-~~~igD~~~Di~~a~~~G~~~i~v 207 (246)
.++-+..+++... -+| .. +.+.||+.||-.+.++|.+.+++-
T Consensus 669 ~~~~qld~il~nh~eIVFARTSPqQKLiIVe~cQr~GaiVaVTGDGVNDsPALKKADIGVAMG 731 (1019)
T KOG0203|consen 669 MSSEQLDELLQNHQEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMG 731 (1019)
T ss_pred cCHHHHHHHHHhCCceEEEecCccceEEeEhhhhhcCcEEEEeCCCcCCChhhcccccceeec
Confidence 2334455555432 122 22 446699999999999999876663
No 236
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=92.48 E-value=0.19 Score=45.93 Aligned_cols=40 Identities=8% Similarity=0.054 Sum_probs=33.2
Q ss_pred CCCcccHHHHHHHHHHc-CCeEEEEeCCCHHHHHHHHHhcC
Q 025896 107 LKPISGLDKVKKWIEDR-GLKRAAVTNAPRENAELMISKLG 146 (246)
Q Consensus 107 ~~~~~~~~~~l~~l~~~-g~~i~i~s~~~~~~~~~~l~~~~ 146 (246)
..+.|++.++|+.|.+. +..++|+|+.+...++..+...+
T Consensus 621 a~p~p~l~~~L~~L~~dp~n~VaIVSGR~~~~Le~~fg~~~ 661 (934)
T PLN03064 621 LRLHPELKEPLRALCSDPKTTIVVLSGSDRSVLDENFGEFD 661 (934)
T ss_pred cCCCHHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhCCCC
Confidence 45678889999999775 57899999999999998887654
No 237
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=92.45 E-value=0.36 Score=37.60 Aligned_cols=41 Identities=15% Similarity=0.074 Sum_probs=35.7
Q ss_pred CcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCC
Q 025896 109 PISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSD 149 (246)
Q Consensus 109 ~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~ 149 (246)
+.|...+.|++++++|+.++++|+++...+...++.+++..
T Consensus 21 i~~~~~~ai~~~~~~G~~~~iaTGR~~~~~~~~~~~l~~~~ 61 (272)
T PRK10530 21 ILPESLEALARAREAGYKVIIVTGRHHVAIHPFYQALALDT 61 (272)
T ss_pred cCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCCCC
Confidence 44557799999999999999999999999999999988764
No 238
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=92.44 E-value=0.35 Score=36.49 Aligned_cols=41 Identities=17% Similarity=0.110 Sum_probs=34.8
Q ss_pred CcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCC
Q 025896 109 PISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSD 149 (246)
Q Consensus 109 ~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~ 149 (246)
+.+...+.|+++++.|++++++|+++...+...++.+++..
T Consensus 16 i~~~~~~al~~l~~~Gi~~~~aTGR~~~~~~~~~~~l~~~~ 56 (225)
T TIGR01482 16 INESALEAIRKAESVGIPVVLVTGNSVQFARALAKLIGTPD 56 (225)
T ss_pred cCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCCC
Confidence 34556788999999999999999999999998888888543
No 239
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=92.36 E-value=0.34 Score=37.66 Aligned_cols=43 Identities=16% Similarity=0.260 Sum_probs=39.0
Q ss_pred CCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCC
Q 025896 107 LKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSD 149 (246)
Q Consensus 107 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~ 149 (246)
..+.+.+.+.|++++++|++++++|+++...+...++.+++..
T Consensus 19 ~~i~~~~~~al~~~~~~g~~v~iaTGR~~~~~~~~~~~l~~~~ 61 (264)
T COG0561 19 KTISPETKEALARLREKGVKVVLATGRPLPDVLSILEELGLDG 61 (264)
T ss_pred CccCHHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcCCCc
Confidence 3467778999999999999999999999999999999999885
No 240
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=92.26 E-value=0.42 Score=36.99 Aligned_cols=38 Identities=21% Similarity=0.347 Sum_probs=34.1
Q ss_pred cHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCC
Q 025896 112 GLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSD 149 (246)
Q Consensus 112 ~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~ 149 (246)
...+.+++|+++|++++++|+++...+...++.+++..
T Consensus 20 ~~~~~i~~l~~~g~~~~~~TgR~~~~~~~~~~~~~~~~ 57 (256)
T TIGR01486 20 PAKEVLERLQELGIPVIPCTSKTAAEVEYLRKELGLED 57 (256)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCCC
Confidence 36789999999999999999999999999999998753
No 241
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=92.00 E-value=1.4 Score=29.76 Aligned_cols=84 Identities=10% Similarity=0.101 Sum_probs=58.8
Q ss_pred cCCCcccHHHHHHHHHHcCCeEEEEeCCCH-HHHHHHHHhcCCCCc---------ceEEEecCCCCCCCCChHHHHHHHH
Q 025896 106 QLKPISGLDKVKKWIEDRGLKRAAVTNAPR-ENAELMISKLGLSDF---------FQVVILGDECERAKPFPDPYFKALE 175 (246)
Q Consensus 106 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~-~~~~~~l~~~~l~~~---------f~~~~~~~~~~~~kp~~~~~~~~~~ 175 (246)
....|+++...|..|++.|+.++++|++.. ..+...|+.+.+..- |+.+..++ -.+...|..+-+
T Consensus 42 e~~fY~Di~rIL~dLk~~GVtl~~ASRt~ap~iA~q~L~~fkvk~~Gvlkps~e~ft~~~~g~-----gsklghfke~~n 116 (144)
T KOG4549|consen 42 EMIFYDDIRRILVDLKKLGVTLIHASRTMAPQIASQGLETFKVKQTGVLKPSLEEFTFEAVGD-----GSKLGHFKEFTN 116 (144)
T ss_pred eeeeccchhHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhccCcccccchhhhcCceeeecC-----cccchhHHHHhh
Confidence 467899999999999999999999998754 567778887765422 22222222 123345677777
Q ss_pred HcCCCCCcEEEEecChhhh
Q 025896 176 MLKVSKDHTFVFEDSVSGI 194 (246)
Q Consensus 176 ~~~~~~~~~~~igD~~~Di 194 (246)
..++...+..++.|-..+-
T Consensus 117 ~s~~~~k~~~~fdDesrnk 135 (144)
T KOG4549|consen 117 NSNSIEKNKQVFDDESRNK 135 (144)
T ss_pred ccCcchhceeeecccccCC
Confidence 7788778888888876443
No 242
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=91.89 E-value=0.08 Score=37.70 Aligned_cols=16 Identities=38% Similarity=0.733 Sum_probs=13.0
Q ss_pred ceEEEeCCCccccChh
Q 025896 23 EAVLFDVDGTLCDSDP 38 (246)
Q Consensus 23 k~iifD~DGTL~~~~~ 38 (246)
|+++||+||||+.+..
T Consensus 1 k~LVlDLD~TLv~~~~ 16 (159)
T PF03031_consen 1 KTLVLDLDGTLVHSSS 16 (159)
T ss_dssp EEEEEE-CTTTEEEES
T ss_pred CEEEEeCCCcEEEEee
Confidence 6899999999998664
No 243
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=91.70 E-value=0.43 Score=36.34 Aligned_cols=42 Identities=17% Similarity=0.222 Sum_probs=37.8
Q ss_pred CCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCC
Q 025896 107 LKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLS 148 (246)
Q Consensus 107 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~ 148 (246)
..+.+...+.|++|+++|+.++++|+++...+...+..+++.
T Consensus 14 ~~i~~~~~~al~~l~~~g~~~~i~TGR~~~~~~~~~~~~~~~ 55 (254)
T PF08282_consen 14 GKISPETIEALKELQEKGIKLVIATGRSYSSIKRLLKELGID 55 (254)
T ss_dssp SSSCHHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHHHTTHC
T ss_pred CeeCHHHHHHHHhhcccceEEEEEccCcccccccccccccch
Confidence 346678899999999999999999999999999999988876
No 244
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=91.49 E-value=0.58 Score=42.54 Aligned_cols=39 Identities=8% Similarity=0.025 Sum_probs=30.2
Q ss_pred CCCcccHHHHHHHHHHc-CCeEEEEeCCCHHHHHHHHHhc
Q 025896 107 LKPISGLDKVKKWIEDR-GLKRAAVTNAPRENAELMISKL 145 (246)
Q Consensus 107 ~~~~~~~~~~l~~l~~~-g~~i~i~s~~~~~~~~~~l~~~ 145 (246)
..+.|++.++|+.|.+. +..++|+|+.+...++..+...
T Consensus 531 a~p~~~l~~~L~~L~~d~~~~V~IvSGR~~~~L~~~~~~~ 570 (797)
T PLN03063 531 LGLHPELKETLKALCSDPKTTVVVLSRSGKDILDKNFGEY 570 (797)
T ss_pred CCCCHHHHHHHHHHHcCCCCEEEEEeCCCHHHHHHHhCCC
Confidence 44567788888888765 5679999999888888888653
No 245
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=90.90 E-value=0.58 Score=36.59 Aligned_cols=38 Identities=8% Similarity=0.041 Sum_probs=34.3
Q ss_pred ccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCC
Q 025896 111 SGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLS 148 (246)
Q Consensus 111 ~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~ 148 (246)
+...+.|++|+++|++++++|+++...+...++.+++.
T Consensus 27 ~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~~~~l~~~ 64 (271)
T PRK03669 27 QPAAPWLTRLREAQVPVILCSSKTAAEMLPLQQTLGLQ 64 (271)
T ss_pred HHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHhCCC
Confidence 44678899999999999999999999999999999875
No 246
>KOG0208 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=90.34 E-value=0.9 Score=41.41 Aligned_cols=45 Identities=11% Similarity=0.016 Sum_probs=35.7
Q ss_pred CCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcc
Q 025896 107 LKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFF 151 (246)
Q Consensus 107 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f 151 (246)
-++.+.....+++|.+..++.+.+|+.+.-..--+.++.|+-+-.
T Consensus 704 NkLK~~T~~VI~eL~~AnIRtVMcTGDNllTaisVakeCgmi~p~ 748 (1140)
T KOG0208|consen 704 NKLKEETKRVIDELNRANIRTVMCTGDNLLTAISVAKECGMIEPQ 748 (1140)
T ss_pred cccccccHHHHHHHHhhcceEEEEcCCchheeeehhhcccccCCC
Confidence 356788899999999999999999999877666666666654433
No 247
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=89.94 E-value=4.9 Score=27.82 Aligned_cols=99 Identities=14% Similarity=0.161 Sum_probs=51.0
Q ss_pred cccHHHHHHHHHHcCCeEEEEeCCCHH-HHHHHHHh----cCCCCcce-EEEecCCC-----CCCCCChHHHHHHHHHcC
Q 025896 110 ISGLDKVKKWIEDRGLKRAAVTNAPRE-NAELMISK----LGLSDFFQ-VVILGDEC-----ERAKPFPDPYFKALEMLK 178 (246)
Q Consensus 110 ~~~~~~~l~~l~~~g~~i~i~s~~~~~-~~~~~l~~----~~l~~~f~-~~~~~~~~-----~~~kp~~~~~~~~~~~~~ 178 (246)
...+.+++.+..++|-++.++-++... .......+ .++..... .+...... ...-..+...+.++..++
T Consensus 21 i~~aa~~i~~~~~~gg~i~~~G~G~S~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (138)
T PF13580_consen 21 IEKAADLIAEALRNGGRIFVCGNGHSAAIASHFAADLGGLFGVNRILLPAIALNDDALTAISNDLEYDEGFARQLLALYD 100 (138)
T ss_dssp HHHHHHHHHHHHHTT--EEEEESTHHHHHHHHHHHHHHCHSSSTSSS-SEEETTSTHHHHHHHHTTGGGTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCchhhhHHHHHHHHHhcCcCCCcccccccccccchHhhhhcccchhhHHHHHHHHHcC
Confidence 344667777777777788888777543 23333332 23333332 33322211 011112345567788888
Q ss_pred CCCCcEEEE----ecChhhh---HHHHhcCCCEEEEc
Q 025896 179 VSKDHTFVF----EDSVSGI---KAGVAAGLPVVGLT 208 (246)
Q Consensus 179 ~~~~~~~~i----gD~~~Di---~~a~~~G~~~i~v~ 208 (246)
+.|.+++++ |.+++=+ ..|++.|+.+|.+.
T Consensus 101 ~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIalT 137 (138)
T PF13580_consen 101 IRPGDVLIVISNSGNSPNVIEAAEEAKERGMKVIALT 137 (138)
T ss_dssp --TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 999998876 6666655 45566799988873
No 248
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=89.29 E-value=8 Score=29.41 Aligned_cols=97 Identities=11% Similarity=0.053 Sum_probs=59.8
Q ss_pred CCCcccHHHHH---HHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCC-CCCCCCChHHHHHHHHHcCCCCC
Q 025896 107 LKPISGLDKVK---KWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDE-CERAKPFPDPYFKALEMLKVSKD 182 (246)
Q Consensus 107 ~~~~~~~~~~l---~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~-~~~~kp~~~~~~~~~~~~~~~~~ 182 (246)
..++|+..+++ +.|-+.|+.+.-+++.+....++ |...|-..... ..+.. .+.+.-++..++.++++.+++
T Consensus 103 ~~L~PD~~etl~Aae~Lv~eGF~VlPY~~~D~v~akr-L~d~GcaavMP--lgsPIGSg~Gi~n~~~l~~i~~~~~vP-- 177 (247)
T PF05690_consen 103 KTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKR-LEDAGCAAVMP--LGSPIGSGRGIQNPYNLRIIIERADVP-- 177 (247)
T ss_dssp TT--B-HHHHHHHHHHHHHTT-EEEEEE-S-HHHHHH-HHHTT-SEBEE--BSSSTTT---SSTHHHHHHHHHHGSSS--
T ss_pred CCcCCChhHHHHHHHHHHHCCCEEeecCCCCHHHHHH-HHHCCCCEEEe--cccccccCcCCCCHHHHHHHHHhcCCc--
Confidence 45678777776 46778899999999998666555 55556443222 22222 245667889999999999774
Q ss_pred cEEEEecC---hhhhHHHHhcCCCEEEEcCC
Q 025896 183 HTFVFEDS---VSGIKAGVAAGLPVVGLTTR 210 (246)
Q Consensus 183 ~~~~igD~---~~Di~~a~~~G~~~i~v~~~ 210 (246)
+.|+-+ ++|...|.+.|+..+++++.
T Consensus 178 --vIvDAGiG~pSdaa~AMElG~daVLvNTA 206 (247)
T PF05690_consen 178 --VIVDAGIGTPSDAAQAMELGADAVLVNTA 206 (247)
T ss_dssp --BEEES---SHHHHHHHHHTT-SEEEESHH
T ss_pred --EEEeCCCCCHHHHHHHHHcCCceeehhhH
Confidence 455443 38999999999999999654
No 249
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=88.04 E-value=0.96 Score=35.46 Aligned_cols=43 Identities=26% Similarity=0.336 Sum_probs=34.2
Q ss_pred CCCcccHHHHHHHHHHcCCeEEEEeCCCHHHH---HHHHHhcCCCC
Q 025896 107 LKPISGLDKVKKWIEDRGLKRAAVTNAPRENA---ELMISKLGLSD 149 (246)
Q Consensus 107 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~---~~~l~~~~l~~ 149 (246)
..+.||+.+.++.|++.|.++.++||++.... -++++++|+..
T Consensus 37 ~~~ipGs~e~l~~L~~~gK~i~fvTNNStksr~~y~kK~~~lG~~~ 82 (306)
T KOG2882|consen 37 EKPIPGSPEALNLLKSLGKQIIFVTNNSTKSREQYMKKFAKLGFNS 82 (306)
T ss_pred CCCCCChHHHHHHHHHcCCcEEEEeCCCcchHHHHHHHHHHhCccc
Confidence 56889999999999999999999999976443 34555667653
No 250
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=87.93 E-value=3.2 Score=38.83 Aligned_cols=72 Identities=11% Similarity=0.025 Sum_probs=50.9
Q ss_pred HHHHHHHHHhcCCCCcceEEEecC-----CCCCCCCChHHHHHHHHHcCCCCCcE-EEEecChh-hhHHHHhcCCC-EEE
Q 025896 135 RENAELMISKLGLSDFFQVVILGD-----ECERAKPFPDPYFKALEMLKVSKDHT-FVFEDSVS-GIKAGVAAGLP-VVG 206 (246)
Q Consensus 135 ~~~~~~~l~~~~l~~~f~~~~~~~-----~~~~~kp~~~~~~~~~~~~~~~~~~~-~~igD~~~-Di~~a~~~G~~-~i~ 206 (246)
...++..|+..++.. ..+++.. ..+..-.+..+++.+..+.|++.+++ +|+||+-| |++... .|.. +|.
T Consensus 923 v~elr~~Lr~~gLr~--~~iys~~~~~LDVlP~~ASKgqAlRyL~~rwgi~l~~v~VfaGdSGntD~e~Ll-~G~~~tvi 999 (1050)
T TIGR02468 923 VKELRKLLRIQGLRC--HAVYCRNGTRLNVIPLLASRSQALRYLFVRWGIELANMAVFVGESGDTDYEGLL-GGLHKTVI 999 (1050)
T ss_pred HHHHHHHHHhCCCce--EEEeecCCcEeeeeeCCCCHHHHHHHHHHHcCCChHHeEEEeccCCCCCHHHHh-CCceeEEE
Confidence 356788888888773 3444432 23555667889999999999999999 56999998 988764 3443 444
Q ss_pred EcC
Q 025896 207 LTT 209 (246)
Q Consensus 207 v~~ 209 (246)
+..
T Consensus 1000 ~~g 1002 (1050)
T TIGR02468 1000 LKG 1002 (1050)
T ss_pred Eec
Confidence 443
No 251
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=87.40 E-value=0.37 Score=28.01 Aligned_cols=25 Identities=12% Similarity=0.065 Sum_probs=16.1
Q ss_pred HHHHHHHcCCCCCcEEEEecChhhhHHHH
Q 025896 170 YFKALEMLKVSKDHTFVFEDSVSGIKAGV 198 (246)
Q Consensus 170 ~~~~~~~~~~~~~~~~~igD~~~Di~~a~ 198 (246)
.+++++++|+ .+++||...|+++..
T Consensus 7 VqQLLK~fG~----~IY~gdr~~DielM~ 31 (62)
T PF06014_consen 7 VQQLLKKFGI----IIYVGDRLWDIELME 31 (62)
T ss_dssp HHHHHHTTS---------S-HHHHHHHHH
T ss_pred HHHHHHHCCE----EEEeCChHHHHHHHH
Confidence 4688999998 899999999998765
No 252
>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]
Probab=87.19 E-value=6.8 Score=34.35 Aligned_cols=91 Identities=14% Similarity=0.233 Sum_probs=48.7
Q ss_pred cHHHHHHHHHHcCCeEEEEeCCCHH---HHHHHHHhcCCC--CcceE--EEecCC--------CCCCCCChHHHHH-HHH
Q 025896 112 GLDKVKKWIEDRGLKRAAVTNAPRE---NAELMISKLGLS--DFFQV--VILGDE--------CERAKPFPDPYFK-ALE 175 (246)
Q Consensus 112 ~~~~~l~~l~~~g~~i~i~s~~~~~---~~~~~l~~~~l~--~~f~~--~~~~~~--------~~~~kp~~~~~~~-~~~ 175 (246)
|+.++...++++||++.-+|..... ..+..|..+.-+ .+-++ +++.+. +-..|| +-|+. +|+
T Consensus 562 GVAkLyt~Ik~NGYk~lyLSARaIgQA~~TR~yL~nv~QdG~~LPdGPViLSPd~lf~Al~REVI~RkP--e~FKIAcL~ 639 (738)
T KOG2116|consen 562 GVAKLYTKIKENGYKILYLSARAIGQADSTRQYLKNVEQDGKKLPDGPVILSPDSLFAALHREVIERKP--EVFKIACLT 639 (738)
T ss_pred hHHHHHHHHHhCCeeEEEEehhhhhhhHHHHHHHHHHhhcCccCCCCCEEeCCCcchHHHHHHHHHcCc--hhhhHHHHH
Confidence 4667777778888888888876432 234444433211 11122 111111 122344 33332 233
Q ss_pred ----HcCCCCCc-EEEEecChhhhHHHHhcCCCE
Q 025896 176 ----MLKVSKDH-TFVFEDSVSGIKAGVAAGLPV 204 (246)
Q Consensus 176 ----~~~~~~~~-~~~igD~~~Di~~a~~~G~~~ 204 (246)
.+.-+.+- ...||...+|+..=+++|++.
T Consensus 640 DIk~LF~p~~nPFYAgFGNR~TDviSY~~VgVP~ 673 (738)
T KOG2116|consen 640 DIKNLFPPSGNPFYAGFGNRITDVISYRQVGVPL 673 (738)
T ss_pred HHHHhcCCCCCceeeecCCCcccceeeeeecCCc
Confidence 23311111 567899999999999999973
No 253
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=87.15 E-value=1.7 Score=32.22 Aligned_cols=38 Identities=13% Similarity=0.134 Sum_probs=32.6
Q ss_pred CcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcC
Q 025896 109 PISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLG 146 (246)
Q Consensus 109 ~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~ 146 (246)
+.+.+.+.|++|+++|++++++|+++...+...++.++
T Consensus 18 ~~~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~~~~~~ 55 (204)
T TIGR01484 18 LSPETIEALERLREAGVKVVLVTGRSLAEIKELLKQLP 55 (204)
T ss_pred CCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHhCC
Confidence 34668899999999999999999999999888887643
No 254
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=86.30 E-value=3.5 Score=32.60 Aligned_cols=39 Identities=18% Similarity=0.132 Sum_probs=31.7
Q ss_pred ccCCCcccHHHHHHHHHHcC-CeEEEEeCCCHHHHHHHHH
Q 025896 105 EQLKPISGLDKVKKWIEDRG-LKRAAVTNAPRENAELMIS 143 (246)
Q Consensus 105 ~~~~~~~~~~~~l~~l~~~g-~~i~i~s~~~~~~~~~~l~ 143 (246)
+...++|..-++++.+|+.| ++++++||+........+.
T Consensus 89 GEPTLy~~L~elI~~~k~~g~~~tflvTNgslpdv~~~L~ 128 (296)
T COG0731 89 GEPTLYPNLGELIEEIKKRGKKTTFLVTNGSLPDVLEELK 128 (296)
T ss_pred CCcccccCHHHHHHHHHhcCCceEEEEeCCChHHHHHHhc
Confidence 45678999999999999999 7999999998744444433
No 255
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=85.95 E-value=5.9 Score=31.61 Aligned_cols=84 Identities=13% Similarity=0.118 Sum_probs=53.9
Q ss_pred cCCCcccHHHHHHHHHHcC-CeEEEEeCCCHHH---HHHHHHhcCCC----------CcceEEEecCCCCCCCCChHHHH
Q 025896 106 QLKPISGLDKVKKWIEDRG-LKRAAVTNAPREN---AELMISKLGLS----------DFFQVVILGDECERAKPFPDPYF 171 (246)
Q Consensus 106 ~~~~~~~~~~~l~~l~~~g-~~i~i~s~~~~~~---~~~~l~~~~l~----------~~f~~~~~~~~~~~~kp~~~~~~ 171 (246)
..+++||+-.+.+.|.+.| .++.-+||++... +++++...++. ..++.++.+... . +...+.
T Consensus 194 tr~~ipGV~~~yr~l~~~~~apvfYvSnSPw~~f~~L~efi~~~~~P~GPl~L~~~g~~~~~i~~sga~--r--K~~~l~ 269 (373)
T COG4850 194 TRQVIPGVSAWYRALTNLGDAPVFYVSNSPWQLFPTLQEFITNRNFPYGPLLLRRWGGVLDNIIESGAA--R--KGQSLR 269 (373)
T ss_pred ccCCCCCHHHHHHHHHhcCCCCeEEecCChhHhHHHHHHHHhcCCCCCCchhHhhcCCcccccccchhh--h--cccHHH
Confidence 4678999999999999987 8899999997643 33444332221 223444433322 1 223345
Q ss_pred HHHHHcCCCCCcEEEEecCh-hhhH
Q 025896 172 KALEMLKVSKDHTFVFEDSV-SGIK 195 (246)
Q Consensus 172 ~~~~~~~~~~~~~~~igD~~-~Di~ 195 (246)
.++.+ ....+.+.|||+- .|.+
T Consensus 270 nil~~--~p~~kfvLVGDsGE~Dpe 292 (373)
T COG4850 270 NILRR--YPDRKFVLVGDSGEHDPE 292 (373)
T ss_pred HHHHh--CCCceEEEecCCCCcCHH
Confidence 56665 4447799999998 7874
No 256
>KOG0205 consensus Plasma membrane H+-transporting ATPase [Inorganic ion transport and metabolism]
Probab=85.33 E-value=5.1 Score=35.27 Aligned_cols=117 Identities=15% Similarity=0.159 Sum_probs=73.4
Q ss_pred CCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCC-cce-EEEecCCC-----------------CCCCCChH
Q 025896 108 KPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSD-FFQ-VVILGDEC-----------------ERAKPFPD 168 (246)
Q Consensus 108 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~-~f~-~~~~~~~~-----------------~~~kp~~~ 168 (246)
+|..+..+.+++....|..+-++|+.......+.-+++|.-. .+. .-..+... +..--.|+
T Consensus 492 pprhdsa~tirral~lGv~VkmitgdqlaI~keTgrrlgmgtnmypss~llG~~~~~~~~~~~v~elie~adgfAgVfpe 571 (942)
T KOG0205|consen 492 PPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSALLGLGKDGSMPGSPVDELIEKADGFAGVFPE 571 (942)
T ss_pred CCccchHHHHHHHHhccceeeeecchHHHHHHhhhhhhccccCcCCchhhccCCCCCCCCCCcHHHHhhhccCccccCHH
Confidence 346677888999889999999999998777777777776541 111 11111100 11112233
Q ss_pred HHHHHHHHcCCCCCcEEEEecChhhhHHHHhcCCCEEEEcCCCChhhhhccCCcEEecCC
Q 025896 169 PYFKALEMLKVSKDHTFVFEDSVSGIKAGVAAGLPVVGLTTRNPEHVLLEANPTFLIKDY 228 (246)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i~~~ 228 (246)
-...+.+.++-....|-+.||+.||..+.+++....... . +-+.....+|.++...
T Consensus 572 hKy~iV~~Lq~r~hi~gmtgdgvndapaLKkAdigiava-~---atdaar~asdiVltep 627 (942)
T KOG0205|consen 572 HKYEIVKILQERKHIVGMTGDGVNDAPALKKADIGIAVA-D---ATDAARSASDIVLTEP 627 (942)
T ss_pred HHHHHHHHHhhcCceecccCCCcccchhhcccccceeec-c---chhhhcccccEEEcCC
Confidence 344566666666677899999999999999998764333 2 2222334566666543
No 257
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=85.03 E-value=1.3 Score=33.81 Aligned_cols=63 Identities=13% Similarity=0.010 Sum_probs=30.5
Q ss_pred CCCChHHHHHHHHHcCCC---CCcEEEEecChhhhHHHHhcCCC-----EEEEcCCCChhhhhccCCcEEecC
Q 025896 163 AKPFPDPYFKALEMLKVS---KDHTFVFEDSVSGIKAGVAAGLP-----VVGLTTRNPEHVLLEANPTFLIKD 227 (246)
Q Consensus 163 ~kp~~~~~~~~~~~~~~~---~~~~~~igD~~~Di~~a~~~G~~-----~i~v~~~~~~~~~~~~~~~~~i~~ 227 (246)
...|..+++.++++++.. +.-++++||...|-.+.+.+.-. .+.|..... ......|.|.+++
T Consensus 163 ~~~KG~av~~ll~~~~~~~~~~~~~l~~GDD~tDE~~f~~~~~~~~~~~~i~V~~~~~--~~~~t~A~y~l~~ 233 (235)
T PF02358_consen 163 GVNKGSAVRRLLEELPFAGPKPDFVLYIGDDRTDEDAFRALRELEEGGFGIKVGSVSV--GEKPTAASYRLDD 233 (235)
T ss_dssp T--HHHHHHHHHTTS---------EEEEESSHHHHHHHHTTTTS----EEEEES-------------------
T ss_pred CCChHHHHHHHHHhcCccccccceeEEecCCCCCHHHHHHHHhcccCCCCeEEEeecc--ccccccccccccc
Confidence 334678899999998875 77899999999999999987543 444433321 1222456666654
No 258
>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]
Probab=83.92 E-value=0.92 Score=33.31 Aligned_cols=29 Identities=38% Similarity=0.485 Sum_probs=21.2
Q ss_pred ceEEEeCCCccccChhhHHHHHHHHHHHh
Q 025896 23 EAVLFDVDGTLCDSDPLHHYAFREMLQEI 51 (246)
Q Consensus 23 k~iifD~DGTL~~~~~~~~~~~~~~~~~~ 51 (246)
-+++||+||||............+.++.+
T Consensus 12 ~l~lfdvdgtLt~~r~~~~~e~~~~l~~l 40 (252)
T KOG3189|consen 12 TLCLFDVDGTLTPPRQKVTPEMLEFLQKL 40 (252)
T ss_pred eEEEEecCCccccccccCCHHHHHHHHHH
Confidence 37889999999998876655555555554
No 259
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=82.97 E-value=15 Score=29.97 Aligned_cols=96 Identities=14% Similarity=0.107 Sum_probs=56.1
Q ss_pred HHHHHHHHHHc-CCe-EEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCCCCCCChHH---HHHHHHHcCCCCCcEEEE
Q 025896 113 LDKVKKWIEDR-GLK-RAAVTNAPRENAELMISKLGLSDFFQVVILGDECERAKPFPDP---YFKALEMLKVSKDHTFVF 187 (246)
Q Consensus 113 ~~~~l~~l~~~-g~~-i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~---~~~~~~~~~~~~~~~~~i 187 (246)
...+++.|+++ ++. .+++|+........+++.+++..-++..+.+......+--... +.+++++ .+|+=++..
T Consensus 16 ~~p~~~~l~~~~~~~~~~~~tg~h~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~pDiv~~~ 93 (365)
T TIGR00236 16 MAPLIRALKKYPEIDSYVIVTAQHREMLDQVLDLFHLPPDYDLNIMSPGQTLGEITSNMLEGLEELLLE--EKPDIVLVQ 93 (365)
T ss_pred HHHHHHHHhhCCCCCEEEEEeCCCHHHHHHHHHhcCCCCCeeeecCCCCCCHHHHHHHHHHHHHHHHHH--cCCCEEEEe
Confidence 45778888875 333 5678888877888888778887444433322111111111122 2233333 446556677
Q ss_pred ecChhh---hHHHHhcCCCEEEEcCC
Q 025896 188 EDSVSG---IKAGVAAGLPVVGLTTR 210 (246)
Q Consensus 188 gD~~~D---i~~a~~~G~~~i~v~~~ 210 (246)
||...- ..+|+..|++.+++..|
T Consensus 94 gd~~~~la~a~aa~~~~ipv~h~~~g 119 (365)
T TIGR00236 94 GDTTTTLAGALAAFYLQIPVGHVEAG 119 (365)
T ss_pred CCchHHHHHHHHHHHhCCCEEEEeCC
Confidence 887654 45667789999988544
No 260
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=82.36 E-value=20 Score=27.53 Aligned_cols=96 Identities=15% Similarity=0.027 Sum_probs=63.7
Q ss_pred CCCcccHHHHHHHHHHc---CCeEEEEeCCCHHHHHHHHHhcCCCCcce--EEEecCCCCCCCCChHHHHHHHHHcCCCC
Q 025896 107 LKPISGLDKVKKWIEDR---GLKRAAVTNAPRENAELMISKLGLSDFFQ--VVILGDECERAKPFPDPYFKALEMLKVSK 181 (246)
Q Consensus 107 ~~~~~~~~~~l~~l~~~---g~~i~i~s~~~~~~~~~~l~~~~l~~~f~--~~~~~~~~~~~kp~~~~~~~~~~~~~~~~ 181 (246)
-.++|+..++++..+.. |+.+.-+++.+....+...+ +|-.-... ..+.+ +.+..+++.++.+.+..++
T Consensus 103 ~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~-~G~~~vmPlg~pIGs---g~Gi~~~~~I~~I~e~~~v-- 176 (248)
T cd04728 103 KTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLED-AGCAAVMPLGSPIGS---GQGLLNPYNLRIIIERADV-- 176 (248)
T ss_pred cccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHH-cCCCEeCCCCcCCCC---CCCCCCHHHHHHHHHhCCC--
Confidence 45688898998887777 99988677776666655444 45432211 12222 2344467888877776433
Q ss_pred CcEEEEecC---hhhhHHHHhcCCCEEEEcCC
Q 025896 182 DHTFVFEDS---VSGIKAGVAAGLPVVGLTTR 210 (246)
Q Consensus 182 ~~~~~igD~---~~Di~~a~~~G~~~i~v~~~ 210 (246)
.+++|-+ +.|+..+.+.|...+++.+.
T Consensus 177 --pVI~egGI~tpeda~~AmelGAdgVlV~SA 206 (248)
T cd04728 177 --PVIVDAGIGTPSDAAQAMELGADAVLLNTA 206 (248)
T ss_pred --cEEEeCCCCCHHHHHHHHHcCCCEEEEChH
Confidence 3555543 48999999999999999776
No 261
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=82.23 E-value=4 Score=31.43 Aligned_cols=38 Identities=8% Similarity=-0.105 Sum_probs=32.8
Q ss_pred ccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCC
Q 025896 111 SGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLS 148 (246)
Q Consensus 111 ~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~ 148 (246)
|.+.+++++++++|+.++++|++....++..+..+++.
T Consensus 24 ~~~~~~i~~~~~~gi~fv~aTGR~~~~~~~~~~~~~~~ 61 (249)
T TIGR01485 24 LRLNALLEDHRGEDSLLVYSTGRSPHSYKELQKQKPLL 61 (249)
T ss_pred HHHHHHHHHhhccCceEEEEcCCCHHHHHHHHhcCCCC
Confidence 44668889999999999999999999999988888765
No 262
>PLN02887 hydrolase family protein
Probab=82.14 E-value=3.1 Score=36.40 Aligned_cols=41 Identities=20% Similarity=0.122 Sum_probs=36.3
Q ss_pred CCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCC
Q 025896 108 KPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLS 148 (246)
Q Consensus 108 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~ 148 (246)
.+.+...+.|++++++|+.++++|++....+...++.+++.
T Consensus 325 ~Is~~t~eAI~kl~ekGi~~vIATGR~~~~i~~~l~~L~l~ 365 (580)
T PLN02887 325 QISETNAKALKEALSRGVKVVIATGKARPAVIDILKMVDLA 365 (580)
T ss_pred ccCHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHhCcc
Confidence 35677889999999999999999999999999889888764
No 263
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=82.08 E-value=2.7 Score=32.83 Aligned_cols=40 Identities=3% Similarity=-0.059 Sum_probs=33.8
Q ss_pred CCCcccHHHHHHHHHH-cCCeEEEEeCCCHHHHHHHHHhcC
Q 025896 107 LKPISGLDKVKKWIED-RGLKRAAVTNAPRENAELMISKLG 146 (246)
Q Consensus 107 ~~~~~~~~~~l~~l~~-~g~~i~i~s~~~~~~~~~~l~~~~ 146 (246)
..+.+.+.+.|+.|++ .|+.++|+|+++...+...+..++
T Consensus 35 ~~i~~~~~~~L~~L~~~~g~~v~i~SGR~~~~~~~~~~~~~ 75 (266)
T PRK10187 35 VVVPDNILQGLQLLATANDGALALISGRSMVELDALAKPYR 75 (266)
T ss_pred ccCCHHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHhcCccc
Confidence 4566888899999998 699999999999998888876655
No 264
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=81.88 E-value=3.7 Score=36.44 Aligned_cols=40 Identities=18% Similarity=0.242 Sum_probs=34.9
Q ss_pred cccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCC
Q 025896 110 ISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSD 149 (246)
Q Consensus 110 ~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~ 149 (246)
.+...+.|++|+++|++++++|+.....+...++.+++..
T Consensus 435 ~~~t~eAL~~L~ekGI~~VIATGRs~~~i~~l~~~Lgl~~ 474 (694)
T PRK14502 435 YSTALDALRLLKDKELPLVFCSAKTMGEQDLYRNELGIKD 474 (694)
T ss_pred CHHHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCCCC
Confidence 3456789999999999999999999999999999988753
No 265
>PTZ00174 phosphomannomutase; Provisional
Probab=81.42 E-value=3.5 Score=31.72 Aligned_cols=36 Identities=8% Similarity=0.130 Sum_probs=29.5
Q ss_pred CcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHh
Q 025896 109 PISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISK 144 (246)
Q Consensus 109 ~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~ 144 (246)
+.|...+.|++++++|+.++++|+++...+...+..
T Consensus 23 is~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~l~~ 58 (247)
T PTZ00174 23 ITQEMKDTLAKLKSKGFKIGVVGGSDYPKIKEQLGE 58 (247)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHhh
Confidence 345577899999999999999999988877666653
No 266
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=80.56 E-value=1.1 Score=31.54 Aligned_cols=16 Identities=31% Similarity=0.538 Sum_probs=13.7
Q ss_pred ceEEEeCCCccccChh
Q 025896 23 EAVLFDVDGTLCDSDP 38 (246)
Q Consensus 23 k~iifD~DGTL~~~~~ 38 (246)
+.+++|+||||+.+..
T Consensus 3 ~~lvldld~tl~~~~~ 18 (148)
T smart00577 3 KTLVLDLDETLVHSTH 18 (148)
T ss_pred cEEEEeCCCCeECCCC
Confidence 5789999999999753
No 267
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=80.38 E-value=3.8 Score=30.80 Aligned_cols=36 Identities=17% Similarity=0.211 Sum_probs=31.3
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCC
Q 025896 113 LDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLS 148 (246)
Q Consensus 113 ~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~ 148 (246)
+.+.+.+|++.|++|+.+|+.....+...-+.+|+.
T Consensus 28 A~pv~~el~d~G~~Vi~~SSKT~aE~~~l~~~l~v~ 63 (274)
T COG3769 28 AAPVLLELKDAGVPVILCSSKTRAEMLYLQKSLGVQ 63 (274)
T ss_pred cchHHHHHHHcCCeEEEeccchHHHHHHHHHhcCCC
Confidence 458899999999999999999888888777888876
No 268
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=80.17 E-value=2.2 Score=35.37 Aligned_cols=18 Identities=39% Similarity=0.571 Sum_probs=15.8
Q ss_pred CCcceEEEeCCCccccCh
Q 025896 20 APLEAVLFDVDGTLCDSD 37 (246)
Q Consensus 20 ~~~k~iifD~DGTL~~~~ 37 (246)
...|.|++|+||||..++
T Consensus 373 ~n~kiVVsDiDGTITkSD 390 (580)
T COG5083 373 NNKKIVVSDIDGTITKSD 390 (580)
T ss_pred CCCcEEEEecCCcEEehh
Confidence 467899999999999876
No 269
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=79.23 E-value=1.2 Score=31.91 Aligned_cols=16 Identities=31% Similarity=0.482 Sum_probs=13.6
Q ss_pred ceEEEeCCCccccChh
Q 025896 23 EAVLFDVDGTLCDSDP 38 (246)
Q Consensus 23 k~iifD~DGTL~~~~~ 38 (246)
+.+++|+|+||+.+..
T Consensus 2 ~~lvlDLDeTLi~~~~ 17 (162)
T TIGR02251 2 KTLVLDLDETLVHSTF 17 (162)
T ss_pred cEEEEcCCCCcCCCCC
Confidence 5799999999998753
No 270
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=78.23 E-value=34 Score=27.58 Aligned_cols=96 Identities=15% Similarity=0.029 Sum_probs=66.0
Q ss_pred CCCcccHHHHHHHHHHc---CCeEEEEeCCCHHHHHHHHHhcCCCCcc--eEEEecCCCCCCCCChHHHHHHHHHcCCCC
Q 025896 107 LKPISGLDKVKKWIEDR---GLKRAAVTNAPRENAELMISKLGLSDFF--QVVILGDECERAKPFPDPYFKALEMLKVSK 181 (246)
Q Consensus 107 ~~~~~~~~~~l~~l~~~---g~~i~i~s~~~~~~~~~~l~~~~l~~~f--~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~ 181 (246)
..+.|+..++++..+.. |+.+.++++.+....+...+. |-.... ...++ .+.+..+|+.++.+.+...+
T Consensus 177 ~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~~-g~~avmPl~~pIG---sg~gv~~p~~i~~~~e~~~v-- 250 (326)
T PRK11840 177 KTLYPDMVETLKATEILVKEGFQVMVYCSDDPIAAKRLEDA-GAVAVMPLGAPIG---SGLGIQNPYTIRLIVEGATV-- 250 (326)
T ss_pred CCcccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhc-CCEEEeecccccc---CCCCCCCHHHHHHHHHcCCC--
Confidence 45678888888887777 999978888877666655443 432111 11111 13344588899999888443
Q ss_pred CcEEEEecCh---hhhHHHHhcCCCEEEEcCC
Q 025896 182 DHTFVFEDSV---SGIKAGVAAGLPVVGLTTR 210 (246)
Q Consensus 182 ~~~~~igD~~---~Di~~a~~~G~~~i~v~~~ 210 (246)
-+.+|-+. .|...|.+.|...++++++
T Consensus 251 --pVivdAGIg~~sda~~AmelGadgVL~nSa 280 (326)
T PRK11840 251 --PVLVDAGVGTASDAAVAMELGCDGVLMNTA 280 (326)
T ss_pred --cEEEeCCCCCHHHHHHHHHcCCCEEEEcce
Confidence 35666554 8999999999999999877
No 271
>COG4483 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.99 E-value=3.2 Score=24.29 Aligned_cols=26 Identities=12% Similarity=0.105 Sum_probs=22.3
Q ss_pred HHHHHHHcCCCCCcEEEEecChhhhHHHHh
Q 025896 170 YFKALEMLKVSKDHTFVFEDSVSGIKAGVA 199 (246)
Q Consensus 170 ~~~~~~~~~~~~~~~~~igD~~~Di~~a~~ 199 (246)
.+++++++|+ ++++||...|+++.+.
T Consensus 7 VqQlLK~~G~----ivyfg~r~~~iemm~~ 32 (68)
T COG4483 7 VQQLLKKFGI----IVYFGKRLYDIEMMQI 32 (68)
T ss_pred HHHHHHHCCe----eeecCCHHHHHHHHHH
Confidence 4688999998 8999999999988653
No 272
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=76.56 E-value=33 Score=26.57 Aligned_cols=97 Identities=12% Similarity=0.082 Sum_probs=67.2
Q ss_pred CCCcccHHHHH---HHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCC-CCCCCCChHHHHHHHHHcCCCCC
Q 025896 107 LKPISGLDKVK---KWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDE-CERAKPFPDPYFKALEMLKVSKD 182 (246)
Q Consensus 107 ~~~~~~~~~~l---~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~-~~~~kp~~~~~~~~~~~~~~~~~ 182 (246)
-.++|+..+++ +.|-+.|+.+.-+++.+....++ |+..|-..... ..+.. .+.+..++..++.+.+...+
T Consensus 117 ~~LlPD~~etl~Aae~Lv~eGF~VlPY~~~D~v~a~r-Led~Gc~aVMP--lgsPIGSg~Gl~n~~~l~~i~e~~~v--- 190 (267)
T CHL00162 117 KYLLPDPIGTLKAAEFLVKKGFTVLPYINADPMLAKH-LEDIGCATVMP--LGSPIGSGQGLQNLLNLQIIIENAKI--- 190 (267)
T ss_pred cccCCChHHHHHHHHHHHHCCCEEeecCCCCHHHHHH-HHHcCCeEEee--ccCcccCCCCCCCHHHHHHHHHcCCC---
Confidence 35677777766 45778899999999998766655 55555432221 11211 24566788899999987665
Q ss_pred cEEEEecCh---hhhHHHHhcCCCEEEEcCC
Q 025896 183 HTFVFEDSV---SGIKAGVAAGLPVVGLTTR 210 (246)
Q Consensus 183 ~~~~igD~~---~Di~~a~~~G~~~i~v~~~ 210 (246)
-+.+|-+. +|...|.+.|...++++++
T Consensus 191 -pVivdAGIgt~sDa~~AmElGaDgVL~nSa 220 (267)
T CHL00162 191 -PVIIDAGIGTPSEASQAMELGASGVLLNTA 220 (267)
T ss_pred -cEEEeCCcCCHHHHHHHHHcCCCEEeecce
Confidence 24555443 8999999999999999776
No 273
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=75.82 E-value=14 Score=29.80 Aligned_cols=31 Identities=23% Similarity=0.218 Sum_probs=26.4
Q ss_pred cCCCcccHHHHHHHHHHcCCeEEEEeCCCHH
Q 025896 106 QLKPISGLDKVKKWIEDRGLKRAAVTNAPRE 136 (246)
Q Consensus 106 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~ 136 (246)
...++|.+.++++.+++.|+.+.+.||+...
T Consensus 140 EPlL~p~l~eli~~~k~~Gi~~~L~TNG~~~ 170 (322)
T PRK13762 140 EPTLYPYLPELIEEFHKRGFTTFLVTNGTRP 170 (322)
T ss_pred cccchhhHHHHHHHHHHcCCCEEEECCCCCH
Confidence 3446788999999999999999999999653
No 274
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=74.79 E-value=2.6 Score=30.98 Aligned_cols=73 Identities=12% Similarity=0.085 Sum_probs=31.0
Q ss_pred HHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhc-----CCCCcceEEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEEEe
Q 025896 114 DKVKKWIEDRGLKRAAVTNAPRENAELMISKL-----GLSDFFQVVILGDECERAKPFPDPYFKALEMLKVSKDHTFVFE 188 (246)
Q Consensus 114 ~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~-----~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~ig 188 (246)
..+|..+++.|++++++.+.-.........++ .+...||.++..++ .-..-+.++|++++++...|
T Consensus 108 Pnll~~a~~~~ip~~LvNarls~~s~~~~~~~~~~~r~~l~~f~~i~aqs~---------~da~r~~~lG~~~~~v~v~G 178 (186)
T PF04413_consen 108 PNLLREAKRRGIPVVLVNARLSERSFRRYRRFPFLFRPLLSRFDRILAQSE---------ADAERFRKLGAPPERVHVTG 178 (186)
T ss_dssp HHHHHH-----S-EEEEEE--------------HHHHHHGGG-SEEEESSH---------HHHHHHHTTT-S--SEEE--
T ss_pred HHHHHHHhhcCCCEEEEeeeeccccchhhhhhHHHHHHHHHhCCEEEECCH---------HHHHHHHHcCCCcceEEEeC
Confidence 36788899999999999876443221111111 23355777765442 23456778899999999999
Q ss_pred cChhhhH
Q 025896 189 DSVSGIK 195 (246)
Q Consensus 189 D~~~Di~ 195 (246)
+-.-|..
T Consensus 179 nlKfd~~ 185 (186)
T PF04413_consen 179 NLKFDQA 185 (186)
T ss_dssp -GGG---
T ss_pred cchhccc
Confidence 9876653
No 275
>PF10307 DUF2410: Hypothetical protein (DUF2410); InterPro: IPR018812 This entry represents a family of proteins conserved in fungi whose function is not known. There are two characteristic sequence motifs, GGWW and TGR.
Probab=74.05 E-value=34 Score=25.44 Aligned_cols=85 Identities=19% Similarity=0.198 Sum_probs=55.8
Q ss_pred HHHHHHH-HHHcCCeEEEEeCCCHH----HHHHHHHhcCCCCcceEEEecCCCCCCCC----ChHHHHHHHHHcCCCCCc
Q 025896 113 LDKVKKW-IEDRGLKRAAVTNAPRE----NAELMISKLGLSDFFQVVILGDECERAKP----FPDPYFKALEMLKVSKDH 183 (246)
Q Consensus 113 ~~~~l~~-l~~~g~~i~i~s~~~~~----~~~~~l~~~~l~~~f~~~~~~~~~~~~kp----~~~~~~~~~~~~~~~~~~ 183 (246)
++++.+. .++...-.+++|+.... .+...+..-++. ||.++.-.......+ +...+..+++.|. ..++
T Consensus 59 Iv~la~~S~~~~dtltVLLTGR~e~~F~~lI~~ml~s~~L~--Fd~v~LKp~~~~~~sTm~fK~~~l~~ll~~Y~-~~~e 135 (197)
T PF10307_consen 59 IVELARLSMQDPDTLTVLLTGRRESKFSSLIERMLASKGLE--FDAVCLKPENQRFSSTMDFKQAFLEDLLHTYK-NAEE 135 (197)
T ss_pred HHHHHHHhhcCCCeeEEEEeCCCchhHHHHHHHHHhcCCCC--ccEEEeCcccccCccccHHHHHHHHHHHHhcC-CCCE
Confidence 4444433 34445566788998753 345555566777 898876554111111 3455667777777 7799
Q ss_pred EEEEecChhhhHHHHhc
Q 025896 184 TFVFEDSVSGIKAGVAA 200 (246)
Q Consensus 184 ~~~igD~~~Di~~a~~~ 200 (246)
+-+.+|+..-+..++..
T Consensus 136 I~IYeDR~~hvk~Fr~F 152 (197)
T PF10307_consen 136 IRIYEDRPKHVKGFRDF 152 (197)
T ss_pred EEEEcCCHHHHHHHHHH
Confidence 99999999999888763
No 276
>PRK00208 thiG thiazole synthase; Reviewed
Probab=73.29 E-value=40 Score=26.01 Aligned_cols=96 Identities=15% Similarity=0.026 Sum_probs=62.5
Q ss_pred CCCcccHHHHHHHHHHc---CCeEEEEeCCCHHHHHHHHHhcCCCCcce--EEEecCCCCCCCCChHHHHHHHHHcCCCC
Q 025896 107 LKPISGLDKVKKWIEDR---GLKRAAVTNAPRENAELMISKLGLSDFFQ--VVILGDECERAKPFPDPYFKALEMLKVSK 181 (246)
Q Consensus 107 ~~~~~~~~~~l~~l~~~---g~~i~i~s~~~~~~~~~~l~~~~l~~~f~--~~~~~~~~~~~kp~~~~~~~~~~~~~~~~ 181 (246)
-.+.|+..++++..+.. |+.+.-+++.+....+. +..+|-.-... ..+.+ +.+..+++.++.+.+..++
T Consensus 103 ~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~-l~~~G~~~vmPlg~pIGs---g~gi~~~~~i~~i~e~~~v-- 176 (250)
T PRK00208 103 KTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKR-LEEAGCAAVMPLGAPIGS---GLGLLNPYNLRIIIEQADV-- 176 (250)
T ss_pred CCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHH-HHHcCCCEeCCCCcCCCC---CCCCCCHHHHHHHHHhcCC--
Confidence 35678888888877776 99988566666555554 44445432211 22222 2344457777777776443
Q ss_pred CcEEEEecC---hhhhHHHHhcCCCEEEEcCC
Q 025896 182 DHTFVFEDS---VSGIKAGVAAGLPVVGLTTR 210 (246)
Q Consensus 182 ~~~~~igD~---~~Di~~a~~~G~~~i~v~~~ 210 (246)
.+++|-+ +.|+..+.+.|...+++.+.
T Consensus 177 --pVIveaGI~tpeda~~AmelGAdgVlV~SA 206 (250)
T PRK00208 177 --PVIVDAGIGTPSDAAQAMELGADAVLLNTA 206 (250)
T ss_pred --eEEEeCCCCCHHHHHHHHHcCCCEEEEChH
Confidence 3555544 37999999999999999776
No 277
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=72.82 E-value=2.2 Score=30.29 Aligned_cols=17 Identities=24% Similarity=0.331 Sum_probs=14.3
Q ss_pred cceEEEeCCCccccChh
Q 025896 22 LEAVLFDVDGTLCDSDP 38 (246)
Q Consensus 22 ~k~iifD~DGTL~~~~~ 38 (246)
-..+++|+|.||+.+..
T Consensus 6 kl~LVLDLDeTLihs~~ 22 (156)
T TIGR02250 6 KLHLVLDLDQTLIHTTK 22 (156)
T ss_pred ceEEEEeCCCCcccccc
Confidence 35789999999999775
No 278
>KOG2832 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=72.20 E-value=20 Score=29.29 Aligned_cols=80 Identities=9% Similarity=0.096 Sum_probs=52.7
Q ss_pred CcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEEEe
Q 025896 109 PISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEMLKVSKDHTFVFE 188 (246)
Q Consensus 109 ~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~ig 188 (246)
-.||+--+|..|-.. +.|+++|+........+++.+.-..++.--+..+......++ - .+=+..++-++.++++|+
T Consensus 215 kRPgvD~FL~~~a~~-yEIVi~sse~gmt~~pl~d~lDP~g~IsYkLfr~~t~y~~G~--H-vKdls~LNRdl~kVivVd 290 (393)
T KOG2832|consen 215 KRPGVDYFLGHLAKY-YEIVVYSSEQGMTVFPLLDALDPKGYISYKLFRGATKYEEGH--H-VKDLSKLNRDLQKVIVVD 290 (393)
T ss_pred cCchHHHHHHhhccc-ceEEEEecCCccchhhhHhhcCCcceEEEEEecCcccccCcc--c-hhhhhhhccccceeEEEE
Confidence 468899999999855 999999999888888888887655444322223322222111 0 122667788889999997
Q ss_pred cChh
Q 025896 189 DSVS 192 (246)
Q Consensus 189 D~~~ 192 (246)
=..|
T Consensus 291 ~d~~ 294 (393)
T KOG2832|consen 291 FDAN 294 (393)
T ss_pred cccc
Confidence 5554
No 279
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=72.05 E-value=42 Score=25.69 Aligned_cols=87 Identities=20% Similarity=0.177 Sum_probs=56.7
Q ss_pred HHHHHHc-CCeEEEEeCCCH---HHHHHHHHhc--CCCCcceEEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEEEecC
Q 025896 117 KKWIEDR-GLKRAAVTNAPR---ENAELMISKL--GLSDFFQVVILGDECERAKPFPDPYFKALEMLKVSKDHTFVFEDS 190 (246)
Q Consensus 117 l~~l~~~-g~~i~i~s~~~~---~~~~~~l~~~--~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~igD~ 190 (246)
|++..++ ++.+-+++++.. +......... .+. .|+++.... ....|.|..-+.+++..|+ -|+.|||.
T Consensus 23 lDErAdRedI~vrv~gsGaKm~pe~~~~~~~~~~~~~~--pDf~i~isP-N~a~PGP~~ARE~l~~~~i---P~IvI~D~ 96 (277)
T PRK00994 23 LDERADREDIDVRVVGSGAKMGPEEVEEVVKKMLEEWK--PDFVIVISP-NPAAPGPKKAREILKAAGI---PCIVIGDA 96 (277)
T ss_pred HHhhhcccCceEEEeccCCCCCHHHHHHHHHHHHHhhC--CCEEEEECC-CCCCCCchHHHHHHHhcCC---CEEEEcCC
Confidence 3444333 688888887743 3344333332 233 344443322 3466778888899998888 48999999
Q ss_pred h--hhhHHHHhcCCCEEEEcC
Q 025896 191 V--SGIKAGVAAGLPVVGLTT 209 (246)
Q Consensus 191 ~--~Di~~a~~~G~~~i~v~~ 209 (246)
+ .+-...++.|+..|.+..
T Consensus 97 p~~K~~d~l~~~g~GYIivk~ 117 (277)
T PRK00994 97 PGKKVKDAMEEQGLGYIIVKA 117 (277)
T ss_pred CccchHHHHHhcCCcEEEEec
Confidence 9 566888889999888753
No 280
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=71.99 E-value=45 Score=25.98 Aligned_cols=58 Identities=17% Similarity=0.231 Sum_probs=36.4
Q ss_pred HHHHHHcCCCCCcEEEEecC------hhhhHHHHhcCCCEEEEcCCCChhhhhccCCcEEecCCCChhhHHHHhh
Q 025896 171 FKALEMLKVSKDHTFVFEDS------VSGIKAGVAAGLPVVGLTTRNPEHVLLEANPTFLIKDYDDPKLWSALEE 239 (246)
Q Consensus 171 ~~~~~~~~~~~~~~~~igD~------~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i~~~~el~~~~~l~~ 239 (246)
..++++++++ +++-=|| ..=+++|++.|++++++.++.. ..+..+++++++ +...+++
T Consensus 190 ~al~~~~~i~---~lVtK~SG~~Gg~~eKi~AA~~lgi~vivI~RP~~------~~~~~~~~~~~e--l~~~l~~ 253 (256)
T TIGR00715 190 KALLREYRID---AVVTKASGEQGGELEKVKAAEALGINVIRIARPQT------IPGVAIFDDISQ--LNQFVAR 253 (256)
T ss_pred HHHHHHcCCC---EEEEcCCCCccchHHHHHHHHHcCCcEEEEeCCCC------CCCCccCCCHHH--HHHHHHH
Confidence 4566667663 3444333 4667899999999999977642 122345677777 5555554
No 281
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=70.08 E-value=13 Score=28.27 Aligned_cols=33 Identities=18% Similarity=0.147 Sum_probs=28.1
Q ss_pred HHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCC
Q 025896 115 KVKKWIEDRGLKRAAVTNAPRENAELMISKLGLS 148 (246)
Q Consensus 115 ~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~ 148 (246)
+.++ ++++|+.++++|+++...+...+..+++.
T Consensus 22 ~~~~-~~~~gi~~viaTGR~~~~v~~~~~~l~l~ 54 (236)
T TIGR02471 22 ELLR-GSGDAVGFGIATGRSVESAKSRYAKLNLP 54 (236)
T ss_pred HHHH-hcCCCceEEEEeCCCHHHHHHHHHhCCCC
Confidence 4455 57889999999999999999999998875
No 282
>PF03332 PMM: Eukaryotic phosphomannomutase; InterPro: IPR005002 This enzyme (5.4.2.8 from EC) is involved in the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions.; GO: 0004615 phosphomannomutase activity, 0019307 mannose biosynthetic process, 0005737 cytoplasm; PDB: 2I55_B 2I54_C 3F9R_A 2FUE_A 2FUC_A 2AMY_A 2Q4R_A.
Probab=69.21 E-value=7.2 Score=29.35 Aligned_cols=43 Identities=9% Similarity=0.113 Sum_probs=27.9
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEe
Q 025896 113 LDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVIL 156 (246)
Q Consensus 113 ~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~ 156 (246)
+.++|.+|++. +.|+++|+++...+..-+....+...||.++.
T Consensus 1 M~~~L~~L~~~-~~vgvVgGsd~~k~~eQl~~~~~~~~fdy~f~ 43 (220)
T PF03332_consen 1 MAELLQKLRKK-VPVGVVGGSDLPKIQEQLGGDDVLDNFDYVFP 43 (220)
T ss_dssp HHHHHHHHHTT-SEEEEEESS-HHHHHHHHSTTTHHHH-SEEEE
T ss_pred CHHHHHHHHhc-CeEEEEcchhHHHHHHHHcccchHhhCCeeec
Confidence 35789999987 99999999987766655532223344665543
No 283
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=67.32 E-value=37 Score=24.94 Aligned_cols=87 Identities=21% Similarity=0.248 Sum_probs=43.4
Q ss_pred HHHHHHHHHHc--CCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEEEecC
Q 025896 113 LDKVKKWIEDR--GLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEMLKVSKDHTFVFEDS 190 (246)
Q Consensus 113 ~~~~l~~l~~~--g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~igD~ 190 (246)
+.+++++|+++ +.++.+-|....... ...+.+ .+.....+. +--.+...++.++. ++|+-+++++..
T Consensus 37 ~~~Li~~l~~~~p~~~illT~~T~tg~~-~~~~~~--~~~v~~~~~------P~D~~~~~~rfl~~--~~P~~~i~~EtE 105 (186)
T PF04413_consen 37 ARPLIKRLRKQRPDLRILLTTTTPTGRE-MARKLL--PDRVDVQYL------PLDFPWAVRRFLDH--WRPDLLIWVETE 105 (186)
T ss_dssp HHHHHHHHTT---TS-EEEEES-CCHHH-HHHGG---GGG-SEEE---------SSHHHHHHHHHH--H--SEEEEES--
T ss_pred HHHHHHHHHHhCCCCeEEEEecCCchHH-HHHHhC--CCCeEEEEe------CccCHHHHHHHHHH--hCCCEEEEEccc
Confidence 56888888876 788887766543221 111221 111222221 11245677888887 677889999877
Q ss_pred h--hhhHHHHhcCCCEEEEcCC
Q 025896 191 V--SGIKAGVAAGLPVVGLTTR 210 (246)
Q Consensus 191 ~--~Di~~a~~~G~~~i~v~~~ 210 (246)
. |=+..+++.|++.++++..
T Consensus 106 lWPnll~~a~~~~ip~~LvNar 127 (186)
T PF04413_consen 106 LWPNLLREAKRRGIPVVLVNAR 127 (186)
T ss_dssp --HHHHHH-----S-EEEEEE-
T ss_pred cCHHHHHHHhhcCCCEEEEeee
Confidence 7 7889999999999999754
No 284
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=65.87 E-value=7.1 Score=31.15 Aligned_cols=50 Identities=14% Similarity=0.101 Sum_probs=36.0
Q ss_pred CCCCCChHHHHH-------HHHHc-CC-CCCcEEEEecCh-hhhHHHH---------------hcCCCEEEEcCC
Q 025896 161 ERAKPFPDPYFK-------ALEML-KV-SKDHTFVFEDSV-SGIKAGV---------------AAGLPVVGLTTR 210 (246)
Q Consensus 161 ~~~kp~~~~~~~-------~~~~~-~~-~~~~~~~igD~~-~Di~~a~---------------~~G~~~i~v~~~ 210 (246)
..+||.+-.|.. ..+.. +. .+..+.+|||.+ .|+..|. .-||.+|+|.+|
T Consensus 268 t~GKPt~ltY~~A~~vl~~~ak~~~~~~~~k~lymvGDNP~sDv~GA~lf~~yap~~~~g~~~~~~w~SILV~TG 342 (389)
T KOG1618|consen 268 TLGKPTKLTYDYAEDVLRRQAKRRGGAAPIKKLYMVGDNPMSDVRGANLFHQYAPELGAGGSANYGWISILVRTG 342 (389)
T ss_pred ccCCCceehHHhHHHHHHHHHHhhcccCCcceeeeecCCCcccccccccccccccccccccccCCCceEEEEeee
Confidence 467887655543 33222 33 347788999999 8999996 668889999888
No 285
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=65.38 E-value=62 Score=25.01 Aligned_cols=45 Identities=24% Similarity=0.384 Sum_probs=32.9
Q ss_pred CcEEEEecChhh---hHHHHhcCCCEEEEcCCCChhhhhccCCcEEecCCCC
Q 025896 182 DHTFVFEDSVSG---IKAGVAAGLPVVGLTTRNPEHVLLEANPTFLIKDYDD 230 (246)
Q Consensus 182 ~~~~~igD~~~D---i~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i~~~~e 230 (246)
-++++|=|-..| +..|+..|++++.+...++.. ...||+|.-+++
T Consensus 157 Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn~dp----d~VD~~IP~Ndd 204 (252)
T COG0052 157 PDVLFVIDPRKEKIAVKEANKLGIPVVALVDTNCDP----DGVDYVIPGNDD 204 (252)
T ss_pred CCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCCCCC----ccCceeecCCCh
Confidence 357777787755 456777899999887765443 357899998877
No 286
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=64.94 E-value=7.7 Score=20.93 Aligned_cols=32 Identities=22% Similarity=0.343 Sum_probs=26.3
Q ss_pred HHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhc
Q 025896 114 DKVKKWIEDRGLKRAAVTNAPRENAELMISKL 145 (246)
Q Consensus 114 ~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~ 145 (246)
.++.++|++.|++.+=+|...+....+.|..+
T Consensus 9 ~eL~~~L~~~G~~~gPIt~sTR~vy~kkL~~~ 40 (44)
T smart00540 9 AELRAELKQYGLPPGPITDTTRKLYEKKLRKL 40 (44)
T ss_pred HHHHHHHHHcCCCCCCcCcchHHHHHHHHHHH
Confidence 47788899999999999998888888777653
No 287
>PF06437 ISN1: IMP-specific 5'-nucleotidase; InterPro: IPR009453 The Saccharomyces cerevisiae ISN1 (YOR155c) gene encodes an IMP-specific 5'-nucleotidase, which catalyses degradation of IMP to inosine as part of the purine salvage pathway.; GO: 0000287 magnesium ion binding, 0016791 phosphatase activity, 0009117 nucleotide metabolic process
Probab=64.93 E-value=10 Score=31.11 Aligned_cols=42 Identities=12% Similarity=0.038 Sum_probs=29.5
Q ss_pred hHHHHHHHHHc----CCCCCcEEEEecCh-----hhhHHHHhcCCCEEEEcCC
Q 025896 167 PDPYFKALEML----KVSKDHTFVFEDSV-----SGIKAGVAAGLPVVGLTTR 210 (246)
Q Consensus 167 ~~~~~~~~~~~----~~~~~~~~~igD~~-----~Di~~a~~~G~~~i~v~~~ 210 (246)
...+..+.+.+ ++.+++|++|||-. ||+.+ +.++ .++|+.++
T Consensus 351 s~GV~~lQ~y~~~~~~i~~~~tLHVGDQF~s~GaNDfka-R~a~-~t~WIasP 401 (408)
T PF06437_consen 351 SLGVRALQKYFDPEGGIKPSETLHVGDQFLSAGANDFKA-RLAC-TTAWIASP 401 (408)
T ss_pred HHhHHHHHHHHHhccCCCccceeeehhhhhccCCcchhh-hhhc-eeeEecCH
Confidence 34555555555 89999999999965 66654 6666 57888655
No 288
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=64.76 E-value=64 Score=25.03 Aligned_cols=99 Identities=16% Similarity=0.217 Sum_probs=56.5
Q ss_pred CCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCC---------------CCCCCh-HHH
Q 025896 107 LKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDECE---------------RAKPFP-DPY 170 (246)
Q Consensus 107 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~---------------~~kp~~-~~~ 170 (246)
+...+++.++.+.+++.|-++.+.++. ..+..+........++-.++...+.. ..-|-. +.=
T Consensus 111 ~~~V~d~~ea~~~~~~~~~rVflt~G~--~~l~~f~~~~~~~~~~~Rvlp~~~~~~~~~~~~~p~~~Iia~~GPfs~~~n 188 (257)
T COG2099 111 WIEVADIEEAAEAAKQLGRRVFLTTGR--QNLAHFVAADAHSHVLARVLPPPDVLAKCEDLGVPPARIIAMRGPFSEEDN 188 (257)
T ss_pred eEEecCHHHHHHHHhccCCcEEEecCc--cchHHHhcCcccceEEEEEcCchHHHHHHHhcCCChhhEEEecCCcChHHH
Confidence 334567888888888887666666555 23333333333334444444322211 111211 223
Q ss_pred HHHHHHcCCCCCcEEEEecCh------hhhHHHHhcCCCEEEEcCC
Q 025896 171 FKALEMLKVSKDHTFVFEDSV------SGIKAGVAAGLPVVGLTTR 210 (246)
Q Consensus 171 ~~~~~~~~~~~~~~~~igD~~------~Di~~a~~~G~~~i~v~~~ 210 (246)
..++++++++ ++.-=||- .=+++|+++|++++++.++
T Consensus 189 ~all~q~~id---~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I~Rp 231 (257)
T COG2099 189 KALLEQYRID---VVVTKNSGGAGGTYEKIEAARELGIPVIMIERP 231 (257)
T ss_pred HHHHHHhCCC---EEEEccCCcccCcHHHHHHHHHcCCcEEEEecC
Confidence 4567777764 44443443 4589999999999999776
No 289
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=64.25 E-value=51 Score=26.26 Aligned_cols=26 Identities=15% Similarity=0.169 Sum_probs=22.1
Q ss_pred cccHHHHHHHHHHcCCeEEEEeCCCH
Q 025896 110 ISGLDKVKKWIEDRGLKRAAVTNAPR 135 (246)
Q Consensus 110 ~~~~~~~l~~l~~~g~~i~i~s~~~~ 135 (246)
.+|+..+-+.|+..|.+++++|+...
T Consensus 62 P~GA~aLa~aL~~lG~~~~ivtd~~~ 87 (291)
T PF14336_consen 62 PPGAAALARALQALGKEVVIVTDERC 87 (291)
T ss_pred hHHHHHHHHHHHHcCCeEEEEECHHH
Confidence 46888888999999999999998744
No 290
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=63.93 E-value=64 Score=24.71 Aligned_cols=97 Identities=13% Similarity=0.037 Sum_probs=66.5
Q ss_pred CCCcccHHHHHH---HHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCC-CCCCCCChHHHHHHHHHcCCCCC
Q 025896 107 LKPISGLDKVKK---WIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDE-CERAKPFPDPYFKALEMLKVSKD 182 (246)
Q Consensus 107 ~~~~~~~~~~l~---~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~-~~~~kp~~~~~~~~~~~~~~~~~ 182 (246)
-.+.|+..++++ .|-+.|+.+.-+++.+....++.. ..|-..... ..+.. .+.+.-++..++.+.++..++
T Consensus 110 ~tLlPD~~etl~Aae~Lv~eGF~VlPY~~dD~v~arrLe-e~GcaavMP--l~aPIGSg~G~~n~~~l~iiie~a~VP-- 184 (262)
T COG2022 110 KTLLPDPIETLKAAEQLVKEGFVVLPYTTDDPVLARRLE-EAGCAAVMP--LGAPIGSGLGLQNPYNLEIIIEEADVP-- 184 (262)
T ss_pred cccCCChHHHHHHHHHHHhCCCEEeeccCCCHHHHHHHH-hcCceEecc--ccccccCCcCcCCHHHHHHHHHhCCCC--
Confidence 456787777764 567789999999999876666544 444332221 11111 245666888999999998774
Q ss_pred cEEEEecC---hhhhHHHHhcCCCEEEEcCC
Q 025896 183 HTFVFEDS---VSGIKAGVAAGLPVVGLTTR 210 (246)
Q Consensus 183 ~~~~igD~---~~Di~~a~~~G~~~i~v~~~ 210 (246)
+.|+-+ ++|...+.+.|+..+++++-
T Consensus 185 --viVDAGiG~pSdAa~aMElG~DaVL~NTA 213 (262)
T COG2022 185 --VIVDAGIGTPSDAAQAMELGADAVLLNTA 213 (262)
T ss_pred --EEEeCCCCChhHHHHHHhcccceeehhhH
Confidence 344433 38999999999999999654
No 291
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=63.30 E-value=69 Score=24.85 Aligned_cols=119 Identities=15% Similarity=0.200 Sum_probs=64.7
Q ss_pred CCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHH-hcCCCCcceEEEecCCCCCCC----------C-ChHHHHHHH
Q 025896 107 LKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMIS-KLGLSDFFQVVILGDECERAK----------P-FPDPYFKAL 174 (246)
Q Consensus 107 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~-~~~l~~~f~~~~~~~~~~~~k----------p-~~~~~~~~~ 174 (246)
+.......++.+.+.+.+..-+++|.+.. .+..+.. ...-..+|-.+....+...+- | ..+.=..++
T Consensus 112 ~~~v~~~~eA~~~l~~~~~~~iflttGsk-~L~~f~~~~~~~~r~~~RvLp~~~~~~g~~~~~iia~~GPfs~e~n~al~ 190 (249)
T PF02571_consen 112 WHYVDSYEEAAELLKELGGGRIFLTTGSK-NLPPFVPAPLPGERLFARVLPTPESALGFPPKNIIAMQGPFSKELNRALF 190 (249)
T ss_pred EEEeCCHHHHHHHHhhcCCCCEEEeCchh-hHHHHhhcccCCCEEEEEECCCccccCCCChhhEEEEeCCCCHHHHHHHH
Confidence 45567788888888777745555555543 3333322 222223333333332221111 1 123345677
Q ss_pred HHcCCCCCcEEEEecCh-----hhhHHHHhcCCCEEEEcCCCChhhhhccCCcEEecCCCChhhHHHH
Q 025896 175 EMLKVSKDHTFVFEDSV-----SGIKAGVAAGLPVVGLTTRNPEHVLLEANPTFLIKDYDDPKLWSAL 237 (246)
Q Consensus 175 ~~~~~~~~~~~~igD~~-----~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i~~~~el~~~~~l 237 (246)
++++++ +++-=||- .=+++|+++|++++++.++... .+..+++++++ ++..+
T Consensus 191 ~~~~i~---~lVtK~SG~~g~~eKi~AA~~lgi~vivI~RP~~~------~~~~~~~~~~e--~l~~l 247 (249)
T PF02571_consen 191 RQYGID---VLVTKESGGSGFDEKIEAARELGIPVIVIKRPPEP------YGDPVVETIEE--LLDWL 247 (249)
T ss_pred HHcCCC---EEEEcCCCchhhHHHHHHHHHcCCeEEEEeCCCCC------CCCcccCCHHH--HHHHH
Confidence 788774 44443332 4579999999999999776422 12233566666 44444
No 292
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=63.21 E-value=21 Score=26.91 Aligned_cols=92 Identities=13% Similarity=0.034 Sum_probs=62.0
Q ss_pred CCcccH-HHHHHHHHHcCCeEEEEeCCCHH-----HHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHcCCCC
Q 025896 108 KPISGL-DKVKKWIEDRGLKRAAVTNAPRE-----NAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEMLKVSK 181 (246)
Q Consensus 108 ~~~~~~-~~~l~~l~~~g~~i~i~s~~~~~-----~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~ 181 (246)
.+.|++ .++.+.+++.|++.+|+...... .++..++.+|+.-.|...+++-+- ..-..+...++.+|-+.
T Consensus 59 ~lHPDl~~~l~~~~~e~g~kavIvp~~~~~~g~~~~lk~~~e~~gi~~~~P~~~CsL~~----~~~p~i~~F~~~fGkP~ 134 (217)
T PF02593_consen 59 GLHPDLTYELPEIAKEAGVKAVIVPSESPKPGLRRQLKKQLEEFGIEVEFPKPFCSLEE----NGNPQIDEFAEYFGKPK 134 (217)
T ss_pred ccCchhHHHHHHHHHHcCCCEEEEecCCCccchHHHHHHHHHhcCceeecCccccccCC----CCChhHHHHHHHhCCce
Confidence 456666 47778889899999999887666 788889999987667766655322 22335677777788765
Q ss_pred CcEEEEecChhhhHHHHhcCCC
Q 025896 182 DHTFVFEDSVSGIKAGVAAGLP 203 (246)
Q Consensus 182 ~~~~~igD~~~Di~~a~~~G~~ 203 (246)
=++..=+|...|++..+.+-+.
T Consensus 135 ~ei~v~~~~I~~V~VlR~aPCG 156 (217)
T PF02593_consen 135 VEIEVENGKIKDVKVLRSAPCG 156 (217)
T ss_pred EEEEecCCcEEEEEEEecCCCc
Confidence 4444334444666666665544
No 293
>PF10113 Fibrillarin_2: Fibrillarin-like archaeal protein; InterPro: IPR016760 Members of this protein family are HmdC, whose gene regularly occurs in the context of genes for HmdA (5,10-methenyltetrahydromethanopterin hydrogenase) and the radical SAM protein HmdB involved in biosynthesis of the HmdA cofactor. Bioinformatics suggests this protein, a homologue of eukaryotic fibrillarin, may be involved in biosynthesis of the guanylyl pyridinol cofactor in HmdA.
Probab=63.03 E-value=19 Score=29.94 Aligned_cols=43 Identities=12% Similarity=0.112 Sum_probs=34.3
Q ss_pred HHHHHHHHHcCCCCCcEEEEecChhhh----HHHHhcCCCEEEEcCC
Q 025896 168 DPYFKALEMLKVSKDHTFVFEDSVSGI----KAGVAAGLPVVGLTTR 210 (246)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~igD~~~Di----~~a~~~G~~~i~v~~~ 210 (246)
.-...+++++|--.+-+++|||++.|+ .++...|+.++.+..+
T Consensus 209 ~~Va~~Akk~gkGveaI~~vGDGyddLI~G~~a~id~~vDvfVvEGg 255 (505)
T PF10113_consen 209 EEVAELAKKYGKGVEAIMHVGDGYDDLITGLKACIDMGVDVFVVEGG 255 (505)
T ss_pred HHHHHHHHHhCCCceEEEEecCChHHHHHHHHHHHhcCCcEEEEeCC
Confidence 345578889988889999999999876 5666678888888766
No 294
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=62.54 E-value=1e+02 Score=27.03 Aligned_cols=87 Identities=13% Similarity=-0.000 Sum_probs=52.3
Q ss_pred cHHHHHHHHHHcCCeEEEEeCCCH-HHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEEEecC
Q 025896 112 GLDKVKKWIEDRGLKRAAVTNAPR-ENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEMLKVSKDHTFVFEDS 190 (246)
Q Consensus 112 ~~~~~l~~l~~~g~~i~i~s~~~~-~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~igD~ 190 (246)
++...|..+++.+-++++++-.+. ...+.+..-+++. ++.+..... -+......-+++-|+ -++|||.
T Consensus 85 Dil~al~~a~~~~~~ia~vg~~~~~~~~~~~~~ll~~~--i~~~~~~~~-----~e~~~~~~~l~~~G~----~~viG~~ 153 (526)
T TIGR02329 85 DVMQALARARRIASSIGVVTHQDTPPALRRFQAAFNLD--IVQRSYVTE-----EDARSCVNDLRARGI----GAVVGAG 153 (526)
T ss_pred hHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCc--eEEEEecCH-----HHHHHHHHHHHHCCC----CEEECCh
Confidence 456666777777778998877654 3345555555665 332221111 011112223333455 4788999
Q ss_pred hhhhHHHHhcCCCEEEEcCC
Q 025896 191 VSGIKAGVAAGLPVVGLTTR 210 (246)
Q Consensus 191 ~~Di~~a~~~G~~~i~v~~~ 210 (246)
.. ...|+++|++.+++..+
T Consensus 154 ~~-~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 154 LI-TDLAEQAGLHGVFLYSA 172 (526)
T ss_pred HH-HHHHHHcCCceEEEecH
Confidence 65 68889999999999765
No 295
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=62.28 E-value=25 Score=25.65 Aligned_cols=30 Identities=17% Similarity=0.186 Sum_probs=24.8
Q ss_pred CCCcccHHHHHHHHHHcCCeEEEEeCCCHH
Q 025896 107 LKPISGLDKVKKWIEDRGLKRAAVTNAPRE 136 (246)
Q Consensus 107 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~ 136 (246)
..+.+.+.++++.+++.|+.+.+.||+...
T Consensus 73 Pll~~~l~~li~~~~~~g~~v~i~TNg~~~ 102 (191)
T TIGR02495 73 PTLQAGLPDFLRKVRELGFEVKLDTNGSNP 102 (191)
T ss_pred ccCcHhHHHHHHHHHHCCCeEEEEeCCCCH
Confidence 344567889999999999999999999643
No 296
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=62.15 E-value=18 Score=29.05 Aligned_cols=85 Identities=19% Similarity=0.229 Sum_probs=51.6
Q ss_pred CCCcccHHHHHHHHHHc----CCeEEEEeCCCHH----HHHHHHHhcCCCCcceEEEecCCC-CCCCCChHHHHHHHHHc
Q 025896 107 LKPISGLDKVKKWIEDR----GLKRAAVTNAPRE----NAELMISKLGLSDFFQVVILGDEC-ERAKPFPDPYFKALEML 177 (246)
Q Consensus 107 ~~~~~~~~~~l~~l~~~----g~~i~i~s~~~~~----~~~~~l~~~~l~~~f~~~~~~~~~-~~~kp~~~~~~~~~~~~ 177 (246)
..+.+++.+.|+.|.++ .++++++||+.-. .+++.-..+|+. ++.+.+ .... .|+.+. +
T Consensus 50 ~~~i~~~~~Alr~L~~~~g~lkIP~vfLTNGGg~~E~~rA~~lS~~Lgv~------Vs~dqviqSHs----P~r~l~-~- 117 (389)
T KOG1618|consen 50 HRPIPGALKALRRLVDNQGQLKIPFVFLTNGGGILESSRAQELSALLGVE------VSADQVIQSHS----PFRLLV-E- 117 (389)
T ss_pred CCCCcchHHHHHHHHhcCCCeeccEEEEeCCCCcchhhHHHHHHHhhCCc------cCHHHHHhhcC----hHHHHh-h-
Confidence 56778999999999888 7999999998532 233333444543 222221 1122 244444 2
Q ss_pred CCCCCcEEEEecChhhhHHHHhcCCCEE
Q 025896 178 KVSKDHTFVFEDSVSGIKAGVAAGLPVV 205 (246)
Q Consensus 178 ~~~~~~~~~igD~~~Di~~a~~~G~~~i 205 (246)
...++++++|+. +-.+.|+..|++.+
T Consensus 118 -~~~k~vLv~G~~-~vr~vAegyGFk~V 143 (389)
T KOG1618|consen 118 -YHYKRVLVVGQG-SVREVAEGYGFKNV 143 (389)
T ss_pred -hhhceEEEecCC-cHHHHhhccCccce
Confidence 344778899854 44566777788744
No 297
>PRK06100 DNA polymerase III subunit psi; Provisional
Probab=60.88 E-value=45 Score=23.01 Aligned_cols=89 Identities=7% Similarity=0.098 Sum_probs=57.9
Q ss_pred HHHHHcCCeEEEEeCCCHHHHHH-HHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEEEecChhhhHH
Q 025896 118 KWIEDRGLKRAAVTNAPRENAEL-MISKLGLSDFFQVVILGDECERAKPFPDPYFKALEMLKVSKDHTFVFEDSVSGIKA 196 (246)
Q Consensus 118 ~~l~~~g~~i~i~s~~~~~~~~~-~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~igD~~~Di~~ 196 (246)
..|++.|+.-+.+.... .... ......+.+-...++.+++.. ..-++-.+..+++.+++++++|.++ +...+.+
T Consensus 7 ~~LqqMGItqW~Lr~P~--~L~g~e~~~i~lp~~~rLliV~~~~p-~~~~~~L~~dVLrsm~l~~~q~~~l--t~eq~~~ 81 (132)
T PRK06100 7 QYLQEMGISQWELIHPE--RLAGYQPPTQDLDSDCKLLLVAPQCP-QNETALLFERILKSMQLELSQARHI--EPEQLSQ 81 (132)
T ss_pred HHHHHcCCceEEecCCc--cccCcccccccCCccceEEEEcCCCC-CccchHHHHHHHHHcCCCHHHeeee--CHHHHhh
Confidence 45678888888886663 1111 111122333345566665532 2223448999999999999999999 7778888
Q ss_pred HHhcCCCEEEEcCCC
Q 025896 197 GVAAGLPVVGLTTRN 211 (246)
Q Consensus 197 a~~~G~~~i~v~~~~ 211 (246)
.-.-+...+|..+..
T Consensus 82 L~~~~~~~~W~lg~~ 96 (132)
T PRK06100 82 LGYHSLEWVWFAGCD 96 (132)
T ss_pred CCcCCCCeEEECCCC
Confidence 877787788886643
No 298
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=60.07 E-value=18 Score=26.24 Aligned_cols=84 Identities=17% Similarity=0.121 Sum_probs=47.7
Q ss_pred cHHHHHHHHHHcCCeEEEEeCCCHHH-HHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHc---CCCCCcEEEE
Q 025896 112 GLDKVKKWIEDRGLKRAAVTNAPREN-AELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEML---KVSKDHTFVF 187 (246)
Q Consensus 112 ~~~~~l~~l~~~g~~i~i~s~~~~~~-~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~---~~~~~~~~~i 187 (246)
++...|..++..+-++++++..+... ...+.+.+|+. +...... +++-+...++++ |+ -++|
T Consensus 65 Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~~~--i~~~~~~--------~~~e~~~~i~~~~~~G~----~viV 130 (176)
T PF06506_consen 65 DILRALAKAKKYGPKIAVVGYPNIIPGLESIEELLGVD--IKIYPYD--------SEEEIEAAIKQAKAEGV----DVIV 130 (176)
T ss_dssp HHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHHT-E--EEEEEES--------SHHHHHHHHHHHHHTT------EEE
T ss_pred HHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHhCCc--eEEEEEC--------CHHHHHHHHHHHHHcCC----cEEE
Confidence 34455555566678899887665432 44444555653 2221111 223344444443 44 5789
Q ss_pred ecChhhhHHHHhcCCCEEEEcCC
Q 025896 188 EDSVSGIKAGVAAGLPVVGLTTR 210 (246)
Q Consensus 188 gD~~~Di~~a~~~G~~~i~v~~~ 210 (246)
|++.. ...|++.|++++.+..+
T Consensus 131 Gg~~~-~~~A~~~gl~~v~i~sg 152 (176)
T PF06506_consen 131 GGGVV-CRLARKLGLPGVLIESG 152 (176)
T ss_dssp ESHHH-HHHHHHTTSEEEESS--
T ss_pred CCHHH-HHHHHHcCCcEEEEEec
Confidence 99875 78899999999999665
No 299
>COG5426 Uncharacterized membrane protein [Function unknown]
Probab=59.48 E-value=31 Score=25.47 Aligned_cols=83 Identities=11% Similarity=0.093 Sum_probs=51.7
Q ss_pred cCCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCC-----------CCCCCChHHHHHHH
Q 025896 106 QLKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDEC-----------ERAKPFPDPYFKAL 174 (246)
Q Consensus 106 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~-----------~~~kp~~~~~~~~~ 174 (246)
..+.-.|+..+|+.|++.++.+.-.... ..++.+-+...-.+.+|.++.++.. ...|+.|+.++.+.
T Consensus 27 s~~y~~GAd~Ll~~Lr~g~~dv~yMpAH--~~q~~FPqtme~L~~YDaivlSDiGsNt~LL~~~t~~~~k~~Pn~L~lik 104 (254)
T COG5426 27 SVTYHEGADPLLKALRGGEYDVTYMPAH--DAQEKFPQTMEGLDAYDAIVLSDIGSNTLLLQPATWYHSKIVPNRLKLIK 104 (254)
T ss_pred ceecccCchHHHHHHhCCCcceEEechH--HHHHhcchhhhhhcccceEEEeecCCceeeccccceeecccCccHHHHHH
Confidence 4567789999999999999988877655 2333333333223447888877643 23566676665444
Q ss_pred HHcCCCCCcEEEEecCh
Q 025896 175 EMLKVSKDHTFVFEDSV 191 (246)
Q Consensus 175 ~~~~~~~~~~~~igD~~ 191 (246)
+. =-+-.-.+|||--+
T Consensus 105 dy-V~~GGGLLMiGGY~ 120 (254)
T COG5426 105 DY-VENGGGLLMIGGYL 120 (254)
T ss_pred HH-HhcCCcEEEEccEE
Confidence 43 22334567777544
No 300
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=59.26 E-value=93 Score=25.07 Aligned_cols=29 Identities=17% Similarity=-0.031 Sum_probs=25.2
Q ss_pred CCCcccHHHHHHHHHHcCCeEEEEeCCCH
Q 025896 107 LKPISGLDKVKKWIEDRGLKRAAVTNAPR 135 (246)
Q Consensus 107 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~ 135 (246)
..+.|++.++++.+++.|..+.+.||+..
T Consensus 83 PLL~pdl~eiv~~~~~~g~~v~l~TNG~l 111 (318)
T TIGR03470 83 PLLHPEIDEIVRGLVARKKFVYLCTNALL 111 (318)
T ss_pred ccccccHHHHHHHHHHcCCeEEEecCcee
Confidence 44678899999999999999999999964
No 301
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=59.24 E-value=79 Score=24.23 Aligned_cols=28 Identities=14% Similarity=0.019 Sum_probs=24.4
Q ss_pred CcccHHHHHHHHHHcCCeEEEEeCCCHH
Q 025896 109 PISGLDKVKKWIEDRGLKRAAVTNAPRE 136 (246)
Q Consensus 109 ~~~~~~~~l~~l~~~g~~i~i~s~~~~~ 136 (246)
+.+++.++++.+++.|+++.+.||+...
T Consensus 85 l~~~l~~li~~l~~~g~~v~leTNGtl~ 112 (238)
T TIGR03365 85 LQKPLGELIDLGKAKGYRFALETQGSVW 112 (238)
T ss_pred hhHhHHHHHHHHHHCCCCEEEECCCCCc
Confidence 4578899999999999999999999753
No 302
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=59.11 E-value=1e+02 Score=25.91 Aligned_cols=110 Identities=10% Similarity=0.111 Sum_probs=59.9
Q ss_pred ccHHHHHHHHHHcCCeEEEEeCCCH--HHHHHHHHhcCCCCcceEEEecC-CCCCCCCChHHHHHHHHHcCCCCCcEEEE
Q 025896 111 SGLDKVKKWIEDRGLKRAAVTNAPR--ENAELMISKLGLSDFFQVVILGD-ECERAKPFPDPYFKALEMLKVSKDHTFVF 187 (246)
Q Consensus 111 ~~~~~~l~~l~~~g~~i~i~s~~~~--~~~~~~l~~~~l~~~f~~~~~~~-~~~~~kp~~~~~~~~~~~~~~~~~~~~~i 187 (246)
.+...+++.+++.++..++...... ......++.+|+. ++... ..-...-+....+.+++++|++.-....+
T Consensus 51 ~d~~~l~~~~~~~~id~vi~~~e~~l~~~~~~~l~~~gi~-----~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~~ 125 (423)
T TIGR00877 51 TDIEALVEFAKKKKIDLAVIGPEAPLVLGLVDALEEAGIP-----VFGPTKEAAQLEGSKAFAKDFMKRYGIPTAEYEVF 125 (423)
T ss_pred CCHHHHHHHHHHhCCCEEEECCchHHHHHHHHHHHHCCCe-----EECCCHHHHHHHCCHHHHHHHHHHCCCCCCCeEEE
Confidence 3456677777777776665443321 1234455666653 11111 11111124456778899999987777777
Q ss_pred ecChhhhHHHHhcCCC-EEEEcCCCChhhhhccCCcEEecCCCC
Q 025896 188 EDSVSGIKAGVAAGLP-VVGLTTRNPEHVLLEANPTFLIKDYDD 230 (246)
Q Consensus 188 gD~~~Di~~a~~~G~~-~i~v~~~~~~~~~~~~~~~~~i~~~~e 230 (246)
.+...-...+...|.+ ++.-...... .....++++..|
T Consensus 126 ~~~~~~~~~~~~~g~P~~VvKp~~~~g-----g~Gv~~v~~~~e 164 (423)
T TIGR00877 126 TDPEEALSYIQEKGAPAIVVKADGLAA-----GKGVIVAKTNEE 164 (423)
T ss_pred CCHHHHHHHHHhcCCCeEEEEECCCCC-----CCCEEEECCHHH
Confidence 5533334566778888 6665433211 223456677666
No 303
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=58.57 E-value=34 Score=27.84 Aligned_cols=91 Identities=14% Similarity=0.314 Sum_probs=51.9
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCC--CCCCChHHHHH---HHHHc-CCCCCcEEE
Q 025896 113 LDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDECE--RAKPFPDPYFK---ALEML-KVSKDHTFV 186 (246)
Q Consensus 113 ~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~--~~kp~~~~~~~---~~~~~-~~~~~~~~~ 186 (246)
...++++|++.|+.+.|.+ .+.......|+..|+. .+..+.... ..|... ...+ +++.. ..+|. +++
T Consensus 16 Fk~~I~eL~~~GheV~it~-R~~~~~~~LL~~yg~~----y~~iG~~g~~~~~Kl~~-~~~R~~~l~~~~~~~~pD-v~i 88 (335)
T PF04007_consen 16 FKNIIRELEKRGHEVLITA-RDKDETEELLDLYGID----YIVIGKHGDSLYGKLLE-SIERQYKLLKLIKKFKPD-VAI 88 (335)
T ss_pred HHHHHHHHHhCCCEEEEEE-eccchHHHHHHHcCCC----eEEEcCCCCCHHHHHHH-HHHHHHHHHHHHHhhCCC-EEE
Confidence 4578899999999887554 4567788888988865 233232211 111100 1111 11111 23443 333
Q ss_pred EecChhhhHHHHhcCCCEEEEcCC
Q 025896 187 FEDSVSGIKAGVAAGLPVVGLTTR 210 (246)
Q Consensus 187 igD~~~Di~~a~~~G~~~i~v~~~ 210 (246)
-..|..-...|.-.|++++.+...
T Consensus 89 s~~s~~a~~va~~lgiP~I~f~D~ 112 (335)
T PF04007_consen 89 SFGSPEAARVAFGLGIPSIVFNDT 112 (335)
T ss_pred ecCcHHHHHHHHHhCCCeEEEecC
Confidence 344555556888999998888765
No 304
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=58.30 E-value=92 Score=24.70 Aligned_cols=91 Identities=11% Similarity=0.180 Sum_probs=54.1
Q ss_pred CcccHHHHHHHHHHcCCe---------EEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHcCC
Q 025896 109 PISGLDKVKKWIEDRGLK---------RAAVTNAPRENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEMLKV 179 (246)
Q Consensus 109 ~~~~~~~~l~~l~~~g~~---------i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~ 179 (246)
-.++..+.++.|+++ ++ |+-.|.+-....+.... -.|.++.... .-..+..-+..++++.|.
T Consensus 169 s~ddt~~Iv~~l~~r-~p~~~~~~~~~ICyAT~nRQ~Avk~la~------~~Dl~iVVG~--~nSSNs~rL~eiA~~~g~ 239 (294)
T COG0761 169 SVDDTAEIVAALKER-FPKIEVPPFNDICYATQNRQDAVKELAP------EVDLVIVVGS--KNSSNSNRLAEIAKRHGK 239 (294)
T ss_pred CHHHHHHHHHHHHHh-CccccCCcccccchhhhhHHHHHHHHhh------cCCEEEEECC--CCCccHHHHHHHHHHhCC
Confidence 346677777777776 44 22222222222222222 2344443332 222355667788888887
Q ss_pred CCCcEEEEecChhhhHHHHhcCCCEEEEcCCCC
Q 025896 180 SKDHTFVFEDSVSGIKAGVAAGLPVVGLTTRNP 212 (246)
Q Consensus 180 ~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~ 212 (246)
.+..| |+..||....-.|..++++..|..
T Consensus 240 ---~aylI-d~~~ei~~~w~~~~~~VGvTAGAS 268 (294)
T COG0761 240 ---PAYLI-DDAEEIDPEWLKGVKTVGVTAGAS 268 (294)
T ss_pred ---CeEEe-CChHhCCHHHhcCccEEEEecCCC
Confidence 34555 778899999999999999988853
No 305
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=57.63 E-value=45 Score=21.94 Aligned_cols=34 Identities=21% Similarity=0.250 Sum_probs=27.0
Q ss_pred HHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCC
Q 025896 115 KVKKWIEDRGLKRAAVTNAPRENAELMISKLGLS 148 (246)
Q Consensus 115 ~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~ 148 (246)
+...+|++.|+++++++-++...++.+.+..+..
T Consensus 4 ~~~~~l~~~gv~lv~I~~g~~~~~~~f~~~~~~p 37 (115)
T PF13911_consen 4 RRKPELEAAGVKLVVIGCGSPEGIEKFCELTGFP 37 (115)
T ss_pred HhHHHHHHcCCeEEEEEcCCHHHHHHHHhccCCC
Confidence 4567788999999999999886688877765553
No 306
>PLN02580 trehalose-phosphatase
Probab=57.40 E-value=20 Score=29.68 Aligned_cols=38 Identities=8% Similarity=0.083 Sum_probs=32.0
Q ss_pred CCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhc
Q 025896 107 LKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKL 145 (246)
Q Consensus 107 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~ 145 (246)
..+.+++.+.|+.|.+. .+++|+|+.+...+..++.-.
T Consensus 140 A~~s~~~~~aL~~La~~-~~VAIVSGR~~~~L~~~l~~~ 177 (384)
T PLN02580 140 ALMSDAMRSAVKNVAKY-FPTAIISGRSRDKVYELVGLT 177 (384)
T ss_pred ccCCHHHHHHHHHHhhC-CCEEEEeCCCHHHHHHHhCCC
Confidence 45678899999999988 689999999999888877543
No 307
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=56.81 E-value=26 Score=28.57 Aligned_cols=89 Identities=18% Similarity=0.193 Sum_probs=47.6
Q ss_pred HHHHc-CCeEE-EEeCCC--HHHHHHHHHhcCCCCcceEEEecCCCCCCCCChHH---HHHHHHHcCCCCCcEEEEecCh
Q 025896 119 WIEDR-GLKRA-AVTNAP--RENAELMISKLGLSDFFQVVILGDECERAKPFPDP---YFKALEMLKVSKDHTFVFEDSV 191 (246)
Q Consensus 119 ~l~~~-g~~i~-i~s~~~--~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~---~~~~~~~~~~~~~~~~~igD~~ 191 (246)
+|+++ ++.+. |+|+.. ..+-..+.+.+++ ...+..+..+.....+.-... +..++++ .+|.=+++.||+.
T Consensus 2 ~l~~~~~~~~~li~tG~H~~~~~g~~~~~~f~i-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~Pd~Vlv~GD~~ 78 (346)
T PF02350_consen 2 ALQKDPGFELILIVTGQHLDPEMGDTFFEGFGI-PKPDYLLDSDSQSMAKSTGLAIIELADVLER--EKPDAVLVLGDRN 78 (346)
T ss_dssp HHHCSTTEEEEEEEECSS--CHHHHHHHHHTT---SEEEE--STTS-HHHHHHHHHHHHHHHHHH--HT-SEEEEETTSH
T ss_pred hhhhCCCCCEEEEEeCCCCCHHHHHHHHhhCCC-CCCCcccccccchHHHHHHHHHHHHHHHHHh--cCCCEEEEEcCCc
Confidence 45554 55554 566665 5666666777888 556666553331111111112 2223333 4788899999999
Q ss_pred hhh---HHHHhcCCCEEEEcCC
Q 025896 192 SGI---KAGVAAGLPVVGLTTR 210 (246)
Q Consensus 192 ~Di---~~a~~~G~~~i~v~~~ 210 (246)
.=+ .+|...+++++++..|
T Consensus 79 ~~la~alaA~~~~ipv~HieaG 100 (346)
T PF02350_consen 79 EALAAALAAFYLNIPVAHIEAG 100 (346)
T ss_dssp HHHHHHHHHHHTT-EEEEES--
T ss_pred hHHHHHHHHHHhCCCEEEecCC
Confidence 655 4566679999999888
No 308
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=56.62 E-value=6.6 Score=30.53 Aligned_cols=93 Identities=14% Similarity=0.242 Sum_probs=61.1
Q ss_pred CCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCC-CCcceEEEecCCCCCCCCChHHHHHHHHHcCCCCCcEE
Q 025896 107 LKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGL-SDFFQVVILGDECERAKPFPDPYFKALEMLKVSKDHTF 185 (246)
Q Consensus 107 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l-~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~ 185 (246)
+.-+|++-++|...-+. +.+++.|++...++..++..+.- ...+...+.-+...... ..|-+=+...|-+..+++
T Consensus 130 V~kRP~vdeFL~~~s~~-~e~v~FTAs~~~Ya~~v~D~LD~~~~i~~~RlyR~~C~~~~---g~yvKdls~~~~dL~~vi 205 (262)
T KOG1605|consen 130 VRKRPHVDEFLSRVSKW-YELVLFTASLEVYADPLLDILDPDRKIISHRLYRDSCTLKD---GNYVKDLSVLGRDLSKVI 205 (262)
T ss_pred EEcCCCHHHHHHHhHHH-HHHHHHHhhhHHHHHHHHHHccCCCCeeeeeecccceEeEC---CcEEEEcceeccCcccEE
Confidence 56678999999988887 88899999988888888887754 23333333222110000 001111244566778999
Q ss_pred EEecChhhhHHHHhcCCC
Q 025896 186 VFEDSVSGIKAGVAAGLP 203 (246)
Q Consensus 186 ~igD~~~Di~~a~~~G~~ 203 (246)
.|+|++.-..+=-+.|++
T Consensus 206 IiDNsP~sy~~~p~NgIp 223 (262)
T KOG1605|consen 206 IVDNSPQSYRLQPENGIP 223 (262)
T ss_pred EEcCChHHhccCccCCCc
Confidence 999999877777777765
No 309
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=56.25 E-value=70 Score=22.67 Aligned_cols=84 Identities=17% Similarity=0.160 Sum_probs=40.4
Q ss_pred cCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCC--CCCCCChHHHHHHHHHcCC--CCCcEEEEecChhhhHH-H
Q 025896 123 RGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDEC--ERAKPFPDPYFKALEMLKV--SKDHTFVFEDSVSGIKA-G 197 (246)
Q Consensus 123 ~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~--~~~kp~~~~~~~~~~~~~~--~~~~~~~igD~~~Di~~-a 197 (246)
.+.++.++++.+.......+..+....-. .++.|... .-.......++.++++.+. ...+++.|-|...-+.. +
T Consensus 48 ~~~~i~~~~~~D~~~~~~~~~~~~~~~tl-vi~iSkSG~T~Et~~~~~~a~~~l~~~~~~~~~~~~vaiT~~~s~l~~~a 126 (158)
T cd05015 48 GGLRLHFVSNVDPDDLAELLKKLDPETTL-FIVISKSGTTLETLANARLAREWLEEAGGDDLAKHFVAITDNGSGLLKKA 126 (158)
T ss_pred CCceEEEEeCCCHHHHHHHHHhCCcccEE-EEEEECCcCCHHHHHHHHHHHHHHHHhccccccceEEEEcCCChHHHHHc
Confidence 35667777777777666666665433211 12222211 1111112233344444333 34577888775554444 4
Q ss_pred HhcCCCEEEE
Q 025896 198 VAAGLPVVGL 207 (246)
Q Consensus 198 ~~~G~~~i~v 207 (246)
...+.....+
T Consensus 127 ~~~~~~~~~~ 136 (158)
T cd05015 127 GIEGLNTFEI 136 (158)
T ss_pred CCCcceeeeC
Confidence 4445554444
No 310
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=56.23 E-value=45 Score=21.97 Aligned_cols=38 Identities=18% Similarity=0.398 Sum_probs=30.5
Q ss_pred ccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCC
Q 025896 111 SGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLS 148 (246)
Q Consensus 111 ~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~ 148 (246)
+...++..++++.|+.++.+|..+...+...++..++.
T Consensus 46 ~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~ 83 (124)
T PF00578_consen 46 PELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLP 83 (124)
T ss_dssp HHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCS
T ss_pred hHHHHHhhhhccceEEeeecccccccchhhhhhhhccc
Confidence 34557777888889999999999888888888887744
No 311
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=56.13 E-value=28 Score=26.26 Aligned_cols=35 Identities=9% Similarity=-0.024 Sum_probs=26.1
Q ss_pred Cccc-HHHHHHHHHHcCCeEEEEeCCCH--HHHHHHHH
Q 025896 109 PISG-LDKVKKWIEDRGLKRAAVTNAPR--ENAELMIS 143 (246)
Q Consensus 109 ~~~~-~~~~l~~l~~~g~~i~i~s~~~~--~~~~~~l~ 143 (246)
+.++ +.++++.+|+.|+.+++.||+.. ......+.
T Consensus 51 lq~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~ 88 (213)
T PRK10076 51 MQAEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAK 88 (213)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHH
Confidence 4455 58999999999999999999943 34444443
No 312
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=55.01 E-value=99 Score=24.06 Aligned_cols=98 Identities=11% Similarity=0.010 Sum_probs=48.6
Q ss_pred cHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEEEe---
Q 025896 112 GLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEMLKVSKDHTFVFE--- 188 (246)
Q Consensus 112 ~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~ig--- 188 (246)
...+.|++.++.|+...++.+.+.......++...-.+.+-..++........-....+..+.+.+...+++++.||
T Consensus 20 ~~~~~l~~a~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~~l~~~~~~~~aIGEiG 99 (258)
T PRK11449 20 DEEASLQRAAQAGVGKIIVPATEAENFARVLALAERYQPLYAALGLHPGMLEKHSDVSLDQLQQALERRPAKVVAVGEIG 99 (258)
T ss_pred CHHHHHHHHHHCCCCEEEEeeCCHHHHHHHHHHHHhCCCEEEEEeeCcCccccCCHHHHHHHHHHHHhCCCCEEEEEecc
Confidence 56788999999987666665555555555444332111111111111111111112234444333333455788887
Q ss_pred -cChh--------------hhHHHHhcCCCEEEEcC
Q 025896 189 -DSVS--------------GIKAGVAAGLPVVGLTT 209 (246)
Q Consensus 189 -D~~~--------------Di~~a~~~G~~~i~v~~ 209 (246)
|... -++.|.+.+.+.+.=.+
T Consensus 100 LD~~~~~~~~~~Q~~vf~~ql~lA~~~~~Pv~iH~r 135 (258)
T PRK11449 100 LDLFGDDPQFERQQWLLDEQLKLAKRYDLPVILHSR 135 (258)
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHhCCCEEEEec
Confidence 4331 14677778888543333
No 313
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=54.83 E-value=94 Score=23.74 Aligned_cols=52 Identities=15% Similarity=0.091 Sum_probs=38.1
Q ss_pred CCCcEEEEecCh--hhhHHHHhcCCCEEEEcCCCCh-------hhhhccCCcEEecCCCCh
Q 025896 180 SKDHTFVFEDSV--SGIKAGVAAGLPVVGLTTRNPE-------HVLLEANPTFLIKDYDDP 231 (246)
Q Consensus 180 ~~~~~~~igD~~--~Di~~a~~~G~~~i~v~~~~~~-------~~~~~~~~~~~i~~~~el 231 (246)
++...++|-|-. |++++.++.|...+.+.+.... ..+.....|++|.+...+
T Consensus 154 ~~~~~vVVTDVRf~nEie~lre~Gg~iV~V~R~~~~vd~H~SE~gLd~~~~D~vI~NdGtl 214 (227)
T PHA02575 154 SDYDYFIVTDVRQDHEMELVRAMGATVIHVVRDTGLVDTHSTEAGLPIQPGDIVITNNGTL 214 (227)
T ss_pred ccCCCEEEeCCCChhHHHHHHHcCCEEEEEecCCCCccCCCCccCCCCCCCCEEEEcCCCH
Confidence 345678898987 9999999999988988887421 112224678889887763
No 314
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=54.69 E-value=1.1e+02 Score=25.34 Aligned_cols=91 Identities=18% Similarity=0.225 Sum_probs=59.1
Q ss_pred HHHHHHHHHcC-C-eEEEEeCCCH--HHHHHHHHhcCCC-CcceEEEecCCCCCCCCChH-------HHHHHHHHcCCCC
Q 025896 114 DKVKKWIEDRG-L-KRAAVTNAPR--ENAELMISKLGLS-DFFQVVILGDECERAKPFPD-------PYFKALEMLKVSK 181 (246)
Q Consensus 114 ~~~l~~l~~~g-~-~i~i~s~~~~--~~~~~~l~~~~l~-~~f~~~~~~~~~~~~kp~~~-------~~~~~~~~~~~~~ 181 (246)
..++.++.+.+ + .++|+|+-.. .+...+++-+++. +-++.-+. ..+-...+ .+..+++ ...|
T Consensus 20 apli~~~~~~~~~~~~vi~TGQH~d~em~~~~le~~~i~~pdy~L~i~----~~~~tl~~~t~~~i~~~~~vl~--~~kP 93 (383)
T COG0381 20 APLVKALEKDPDFELIVIHTGQHRDYEMLDQVLELFGIRKPDYDLNIM----KPGQTLGEITGNIIEGLSKVLE--EEKP 93 (383)
T ss_pred hHHHHHHHhCCCCceEEEEecccccHHHHHHHHHHhCCCCCCcchhcc----ccCCCHHHHHHHHHHHHHHHHH--hhCC
Confidence 46778888775 4 4566788777 7889999999887 54443322 11111122 2333444 4678
Q ss_pred CcEEEEecChhhhH---HHHhcCCCEEEEcCC
Q 025896 182 DHTFVFEDSVSGIK---AGVAAGLPVVGLTTR 210 (246)
Q Consensus 182 ~~~~~igD~~~Di~---~a~~~G~~~i~v~~~ 210 (246)
+=+++-||+..=+. +|....+++.++..|
T Consensus 94 D~VlVhGDT~t~lA~alaa~~~~IpV~HvEAG 125 (383)
T COG0381 94 DLVLVHGDTNTTLAGALAAFYLKIPVGHVEAG 125 (383)
T ss_pred CEEEEeCCcchHHHHHHHHHHhCCceEEEecc
Confidence 88888899997666 444458888888777
No 315
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=54.22 E-value=54 Score=23.35 Aligned_cols=44 Identities=14% Similarity=0.185 Sum_probs=33.1
Q ss_pred CCcccHHHHHHHHHHcCCeEE-EEeCCCHHHHHHHHHhcCCCCcc
Q 025896 108 KPISGLDKVKKWIEDRGLKRA-AVTNAPRENAELMISKLGLSDFF 151 (246)
Q Consensus 108 ~~~~~~~~~l~~l~~~g~~i~-i~s~~~~~~~~~~l~~~~l~~~f 151 (246)
.-.||.++-.++|+.+|+..+ ++|-+++..+..+-+.++-....
T Consensus 62 ~HvPGyi~~a~elksKGVd~iicvSVnDpFv~~aW~k~~g~~~~V 106 (171)
T KOG0541|consen 62 SHVPGYIEKADELKSKGVDEIICVSVNDPFVMKAWAKSLGANDHV 106 (171)
T ss_pred ccCchHHHHHHHHHhcCCcEEEEEecCcHHHHHHHHhhcCccceE
Confidence 346899999999999997755 56777777777777777765433
No 316
>PLN03017 trehalose-phosphatase
Probab=53.98 E-value=27 Score=28.76 Aligned_cols=34 Identities=15% Similarity=0.060 Sum_probs=29.4
Q ss_pred CCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHH
Q 025896 108 KPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMI 142 (246)
Q Consensus 108 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l 142 (246)
.+.+++.+.|++|. ++++++|+|+++...+...+
T Consensus 133 ~i~~~~~~aL~~La-~~~~vaIvSGR~~~~l~~~~ 166 (366)
T PLN03017 133 FMSSKMRRTVKKLA-KCFPTAIVTGRCIDKVYNFV 166 (366)
T ss_pred cCCHHHHHHHHHHh-cCCcEEEEeCCCHHHHHHhh
Confidence 57788899999999 67999999999988888764
No 317
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=53.43 E-value=1e+02 Score=25.32 Aligned_cols=109 Identities=15% Similarity=0.161 Sum_probs=66.5
Q ss_pred cHHHHHHHHHHcCCeEEEEeCCC-H--HHHHHHHHh-cCCC--CcceEEEecCCCCCCCCChHHHHHHHHHcCCCCCcEE
Q 025896 112 GLDKVKKWIEDRGLKRAAVTNAP-R--ENAELMISK-LGLS--DFFQVVILGDECERAKPFPDPYFKALEMLKVSKDHTF 185 (246)
Q Consensus 112 ~~~~~l~~l~~~g~~i~i~s~~~-~--~~~~~~l~~-~~l~--~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~ 185 (246)
+.+.+.+.+|++|.--++++... . .......+. -++. ++...+.+.+...... .+.-+-...+++
T Consensus 113 DTRaLtr~iR~~G~m~~~I~~~~~~~~~~~~~~~~~~~~~~~~dlv~~VSt~~~~~~~~---------~~~~~~~~~~Vv 183 (368)
T COG0505 113 DTRALTRKIREKGAMKGVIATGPELDPAKLLERARAFPGILGTDLVKEVSTKEPYTWPG---------LNGGGEPGKHVV 183 (368)
T ss_pred cHHHHHHHHHhcCCcceEeecCcccChHHHHHHHhhcCCCCcccccceeecCCceeccc---------cccCCCCCcEEE
Confidence 46889999999998887777664 1 111111111 1221 2333333222221111 111145566788
Q ss_pred EEecCh--hhhHHHHhcCCCEEEEcCCCChhhhhccCCcEEecCCC
Q 025896 186 VFEDSV--SGIKAGVAAGLPVVGLTTRNPEHVLLEANPTFLIKDYD 229 (246)
Q Consensus 186 ~igD~~--~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i~~~~ 229 (246)
+|+=+. |=+.+..+-|+....|......++.....||-++=|+.
T Consensus 184 ~iD~GvK~nIlr~L~~rg~~vtVVP~~t~~eeIl~~~pDGiflSNG 229 (368)
T COG0505 184 VIDFGVKRNILRELVKRGCRVTVVPADTSAEEILALNPDGIFLSNG 229 (368)
T ss_pred EEEcCccHHHHHHHHHCCCeEEEEcCCCCHHHHHhhCCCEEEEeCC
Confidence 886666 77899999999999998888888877778887765543
No 318
>PLN02151 trehalose-phosphatase
Probab=53.41 E-value=24 Score=28.90 Aligned_cols=37 Identities=11% Similarity=0.064 Sum_probs=30.7
Q ss_pred CCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHh
Q 025896 107 LKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISK 144 (246)
Q Consensus 107 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~ 144 (246)
..+.+++.+.|++|.+ +.+++|+|+.+...+..++.-
T Consensus 119 A~~~~~~~~aL~~La~-~~~vaIvSGR~~~~l~~~~~~ 155 (354)
T PLN02151 119 AFMSKKMRNTVRKLAK-CFPTAIVSGRCREKVSSFVKL 155 (354)
T ss_pred ccCCHHHHHHHHHHhc-CCCEEEEECCCHHHHHHHcCC
Confidence 4567889999999995 479999999998888877653
No 319
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=53.19 E-value=27 Score=24.51 Aligned_cols=26 Identities=23% Similarity=0.248 Sum_probs=22.2
Q ss_pred cccHHHHHHHHHHcCCeEEEEeCCCH
Q 025896 110 ISGLDKVKKWIEDRGLKRAAVTNAPR 135 (246)
Q Consensus 110 ~~~~~~~l~~l~~~g~~i~i~s~~~~ 135 (246)
.+.+.++++.+++.|+++.+.||...
T Consensus 74 ~~~l~~ll~~lk~~Gl~i~l~Tg~~~ 99 (147)
T TIGR02826 74 REALLSLLKIFKEKGLKTCLYTGLEP 99 (147)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCC
Confidence 35688999999999999999998754
No 320
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=53.08 E-value=23 Score=23.65 Aligned_cols=29 Identities=17% Similarity=0.207 Sum_probs=23.6
Q ss_pred cccHHHHHHHHHHcCCeEEEEeCCCHHHH
Q 025896 110 ISGLDKVKKWIEDRGLKRAAVTNAPRENA 138 (246)
Q Consensus 110 ~~~~~~~l~~l~~~g~~i~i~s~~~~~~~ 138 (246)
.+++.+.++.++++|.+++.+|+.....+
T Consensus 59 t~e~~~~~~~a~~~g~~vi~iT~~~~s~l 87 (126)
T cd05008 59 TADTLAALRLAKEKGAKTVAITNVVGSTL 87 (126)
T ss_pred CHHHHHHHHHHHHcCCeEEEEECCCCChH
Confidence 45688999999999999999999854433
No 321
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=52.95 E-value=92 Score=23.05 Aligned_cols=34 Identities=15% Similarity=0.077 Sum_probs=22.2
Q ss_pred CcEEEEecChhhh------HHHHhcCCCEEEEcCCCChhh
Q 025896 182 DHTFVFEDSVSGI------KAGVAAGLPVVGLTTRNPEHV 215 (246)
Q Consensus 182 ~~~~~igD~~~Di------~~a~~~G~~~i~v~~~~~~~~ 215 (246)
-+.++.||...|. ..+.++|+..+.-.|+.++.+
T Consensus 89 ~~~vv~G~i~sd~~~~~~e~~~~~~gl~~~~PLW~~~~~~ 128 (194)
T cd01994 89 VDAVVFGAILSEYQRTRVERVCERLGLEPLAPLWGRDQEE 128 (194)
T ss_pred CCEEEECccccHHHHHHHHHHHHHcCCEEEecccCCCHHH
Confidence 3467778877554 455667877777777755544
No 322
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=52.92 E-value=21 Score=23.92 Aligned_cols=28 Identities=21% Similarity=0.286 Sum_probs=23.7
Q ss_pred CcccHHHHHHHHHHcCCeEEEEeCCCHH
Q 025896 109 PISGLDKVKKWIEDRGLKRAAVTNAPRE 136 (246)
Q Consensus 109 ~~~~~~~~l~~l~~~g~~i~i~s~~~~~ 136 (246)
-.+.+.+.++.+|++|.+++.+|+....
T Consensus 59 ~t~~~~~~~~~a~~~g~~vi~iT~~~~s 86 (128)
T cd05014 59 ETDELLNLLPHLKRRGAPIIAITGNPNS 86 (128)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 3567889999999999999999998544
No 323
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=52.18 E-value=58 Score=20.95 Aligned_cols=37 Identities=14% Similarity=0.077 Sum_probs=28.4
Q ss_pred HHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcce
Q 025896 114 DKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQ 152 (246)
Q Consensus 114 ~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~ 152 (246)
..+.++++++|.++.++.-. ...+..++..|+.+.|+
T Consensus 61 ~~~~~~~~~~g~~l~l~~~~--~~v~~~l~~~gl~~~~~ 97 (106)
T TIGR02886 61 LGRYKKIKNEGGEVIVCNVS--PAVKRLFELSGLFKIIR 97 (106)
T ss_pred HHHHHHHHHcCCEEEEEeCC--HHHHHHHHHhCCceEEE
Confidence 35677788899988877544 67888889999887774
No 324
>KOG0208 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=51.97 E-value=63 Score=30.38 Aligned_cols=89 Identities=15% Similarity=0.254 Sum_probs=52.0
Q ss_pred CcccHHHHHHHHHHcCCeEEEEeCCCHHH-HHHHHHhcC---CC---CcceEEEecCCCCCCCCChHHHHHHHHHcCCCC
Q 025896 109 PISGLDKVKKWIEDRGLKRAAVTNAPREN-AELMISKLG---LS---DFFQVVILGDECERAKPFPDPYFKALEMLKVSK 181 (246)
Q Consensus 109 ~~~~~~~~l~~l~~~g~~i~i~s~~~~~~-~~~~l~~~~---l~---~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~ 181 (246)
...+..+.++....+|+|++.+....... .....+++. +. .+.-.++.. ..-|+.....-.-+.+.++
T Consensus 648 vP~dy~evl~~Yt~~GfRVIAlA~K~L~~~~~~~~~~~~Rd~vEs~l~FlGLiVme---NkLK~~T~~VI~eL~~AnI-- 722 (1140)
T KOG0208|consen 648 VPADYQEVLKEYTHQGFRVIALASKELETSTLQKAQKLSRDTVESNLEFLGLIVME---NKLKEETKRVIDELNRANI-- 722 (1140)
T ss_pred CCccHHHHHHHHHhCCeEEEEEecCccCcchHHHHhhccHhhhhccceeeEEEEee---cccccccHHHHHHHHhhcc--
Confidence 34577888899999999998775543322 222233221 11 111222221 2345554434344444344
Q ss_pred CcEEEEecCh-hhhHHHHhcCC
Q 025896 182 DHTFVFEDSV-SGIKAGVAAGL 202 (246)
Q Consensus 182 ~~~~~igD~~-~Di~~a~~~G~ 202 (246)
+.++.-||+. .-+..|+++|+
T Consensus 723 RtVMcTGDNllTaisVakeCgm 744 (1140)
T KOG0208|consen 723 RTVMCTGDNLLTAISVAKECGM 744 (1140)
T ss_pred eEEEEcCCchheeeehhhcccc
Confidence 5566669999 99999999998
No 325
>COG2241 CobL Precorrin-6B methylase 1 [Coenzyme metabolism]
Probab=51.70 E-value=1e+02 Score=23.24 Aligned_cols=77 Identities=17% Similarity=0.070 Sum_probs=48.9
Q ss_pred CCeEEEEeCCCHHHHH--HHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEEE---ecChhhhHHHH
Q 025896 124 GLKRAAVTNAPRENAE--LMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEMLKVSKDHTFVF---EDSVSGIKAGV 198 (246)
Q Consensus 124 g~~i~i~s~~~~~~~~--~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~i---gD~~~Di~~a~ 198 (246)
|.++++++.+++.+.. ..+.+. ... ++ -.-.|.+..++.++.++|.+.+++-+| |...+++....
T Consensus 68 g~~v~VLasGDP~f~G~g~~l~~~-~~~--------~~-v~iIPgiSS~q~a~ARlg~~~~~~~~islHgr~~~~l~~~~ 137 (210)
T COG2241 68 GRDVVVLASGDPLFSGVGRLLRRK-FSC--------EE-VEIIPGISSVQLAAARLGWPLQDTEVISLHGRPVELLRPLL 137 (210)
T ss_pred CCCeEEEecCCcchhhhHHHHHHh-cCc--------cc-eEEecChhHHHHHHHHhCCChHHeEEEEecCCCHHHHHHHH
Confidence 7889998888775532 222221 110 11 124477888999999999998886665 45557777777
Q ss_pred hcCCCEEEEcCC
Q 025896 199 AAGLPVVGLTTR 210 (246)
Q Consensus 199 ~~G~~~i~v~~~ 210 (246)
.-|-..+.....
T Consensus 138 ~~~~~~vil~~~ 149 (210)
T COG2241 138 ENGRRLVILTPD 149 (210)
T ss_pred hCCceEEEeCCC
Confidence 556555555433
No 326
>TIGR01101 V_ATP_synt_F vacuolar ATP synthase F subunit. This model describes the vacuolar ATP synthase F subunit (14 kDa subunit) in eukaryotes. In some archaeal species this protein subunit is referred as G subunit
Probab=51.31 E-value=72 Score=21.40 Aligned_cols=63 Identities=6% Similarity=-0.002 Sum_probs=41.9
Q ss_pred ccHHHHHHH-HHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCC-CCCCCCChHHHHHHHH
Q 025896 111 SGLDKVKKW-IEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDE-CERAKPFPDPYFKALE 175 (246)
Q Consensus 111 ~~~~~~l~~-l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~-~~~~kp~~~~~~~~~~ 175 (246)
+++.+.+++ +.+..+-++++|......++..+++.. ..+..++.-.+ .....|..+.+.+-.+
T Consensus 46 eei~~~~~~~l~~~digIIlIte~~a~~i~~~I~~~~--~~~PaIieIP~k~~~y~~~~d~i~~~~~ 110 (115)
T TIGR01101 46 SEIEDCFNRFLKRDDIAIILINQHIAEMIRHAVDAHT--RSIPAVLEIPSKDHPYDASKDSILRRAR 110 (115)
T ss_pred HHHHHHHHHHhhcCCeEEEEEcHHHHHHhHHHHHhcC--CcCCEEEEECCCCCCCCCcccHHHHHHH
Confidence 567788888 777778899999988888888888865 55666654433 2334444444444333
No 327
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=50.09 E-value=1.2e+02 Score=23.60 Aligned_cols=94 Identities=13% Similarity=0.150 Sum_probs=53.2
Q ss_pred HHHHHHHcCCeEEEEeCCCHHHH-----HHHHHhcCCC-CcceEEEecCCC------CCCCCChHHHHHHHHHcCCCCCc
Q 025896 116 VKKWIEDRGLKRAAVTNAPRENA-----ELMISKLGLS-DFFQVVILGDEC------ERAKPFPDPYFKALEMLKVSKDH 183 (246)
Q Consensus 116 ~l~~l~~~g~~i~i~s~~~~~~~-----~~~l~~~~l~-~~f~~~~~~~~~------~~~kp~~~~~~~~~~~~~~~~~~ 183 (246)
..+.+++ |-++.++-.+..... .+...++|.. ..+..++.+... ....-.++...+.+...++.+++
T Consensus 42 ~~~~l~~-ggrl~~~GaGtSg~la~~da~e~~~tfg~~~~~v~~~iagg~~a~~~a~~~~edd~~~~~~~l~a~~l~~~D 120 (257)
T cd05007 42 AAERLRA-GGRLIYVGAGTSGRLGVLDASELPPTFGTPPERVVGLIAGGEPALTRAVEGAEDDEEAGAADLQAINLTERD 120 (257)
T ss_pred HHHHHHc-CCEEEEEcCcHHHHHHHHHHHhccccccCCcccceEEEeCCHHHHHhhccccCChHHHHHHHHHHcCCCCCC
Confidence 3344554 456776666654332 2444555664 334555444322 11222345566777778888887
Q ss_pred EEEE----ecCh---hhhHHHHhcCCCEEEEcCC
Q 025896 184 TFVF----EDSV---SGIKAGVAAGLPVVGLTTR 210 (246)
Q Consensus 184 ~~~i----gD~~---~Di~~a~~~G~~~i~v~~~ 210 (246)
++++ |.++ .=++.|++.|++++.+...
T Consensus 121 vvI~IS~SG~T~~vi~al~~Ak~~Ga~~I~It~~ 154 (257)
T cd05007 121 VVIGIAASGRTPYVLGALRYARARGALTIGIACN 154 (257)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECC
Confidence 6643 3333 3457888899999999754
No 328
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=50.01 E-value=4.2 Score=31.61 Aligned_cols=19 Identities=26% Similarity=0.377 Sum_probs=15.4
Q ss_pred CCcceEEEeCCCccccChh
Q 025896 20 APLEAVLFDVDGTLCDSDP 38 (246)
Q Consensus 20 ~~~k~iifD~DGTL~~~~~ 38 (246)
.+-|++++|+|+||+.+..
T Consensus 87 ~~kk~lVLDLDeTLvHss~ 105 (262)
T KOG1605|consen 87 VGRKTLVLDLDETLVHSSL 105 (262)
T ss_pred CCCceEEEeCCCccccccc
Confidence 3569999999999997663
No 329
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=49.37 E-value=31 Score=26.25 Aligned_cols=37 Identities=14% Similarity=0.071 Sum_probs=22.8
Q ss_pred cCCCcccHHHHHHHHHHcC-CeEEEEeCCCHHHHHHHH
Q 025896 106 QLKPISGLDKVKKWIEDRG-LKRAAVTNAPRENAELMI 142 (246)
Q Consensus 106 ~~~~~~~~~~~l~~l~~~g-~~i~i~s~~~~~~~~~~l 142 (246)
...+.+++.++|+.|.+.. ..++|+|+.+....+.+.
T Consensus 17 ~~~~~~~~~~~L~~La~~~~~~v~IvSGR~~~~~~~~~ 54 (235)
T PF02358_consen 17 AAVPPPELRELLRALAADPNNTVAIVSGRSLDDLERFG 54 (235)
T ss_dssp G----HHHHHHHHHHHHHSE--EEEE-SS-HHHHHHH-
T ss_pred ccCCCHHHHHHHHHHhccCCCEEEEEEeCCHHHhHHhc
Confidence 4677889999999998873 359999999887744443
No 330
>COG4821 Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain [General function prediction only]
Probab=49.35 E-value=1.1e+02 Score=22.94 Aligned_cols=98 Identities=10% Similarity=0.018 Sum_probs=52.7
Q ss_pred HHHHHHHHHHcCCeEEEE-eCCCHHHHHHHHHhcCCCCcceEEEecCCCCCCCC--------ChHHHHHHHHHcCCCCCc
Q 025896 113 LDKVKKWIEDRGLKRAAV-TNAPRENAELMISKLGLSDFFQVVILGDECERAKP--------FPDPYFKALEMLKVSKDH 183 (246)
Q Consensus 113 ~~~~l~~l~~~g~~i~i~-s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp--------~~~~~~~~~~~~~~~~~~ 183 (246)
+.+++.+--.+|-++.+. |+.+....+++.-+.|=.....-++...-+-..-+ ....-+..++++++.+.+
T Consensus 27 aa~lVAesi~n~g~i~~FG~GHShm~aeEv~yRAGGLa~~~pIL~~plMLhega~ass~lErieg~~~~~l~~~~i~~~D 106 (243)
T COG4821 27 AAKLVAESIMNDGRIYVFGSGHSHMLAEEVFYRAGGLAPIKPILMEPLMLHEGAVASSYLERIEGYAKLFLHRLQIRPND 106 (243)
T ss_pred HHHHHHHHHhcCCEEEEecCchHHHHHHHHHhhcCCccccccccCChhhhcccccccchhHhhhhHHHHHHHHhcCCCCC
Confidence 444554443444455554 55566667777777643322332332221111111 112234578889999999
Q ss_pred EEEE-e---cChhhhHH---HHhcCCCEEEEcCC
Q 025896 184 TFVF-E---DSVSGIKA---GVAAGLPVVGLTTR 210 (246)
Q Consensus 184 ~~~i-g---D~~~Di~~---a~~~G~~~i~v~~~ 210 (246)
+++| . -++..+++ +++-|+..|.+..-
T Consensus 107 VliviSnSGrNpvpie~A~~~rekGa~vI~vTSl 140 (243)
T COG4821 107 VLIVISNSGRNPVPIEVAEYAREKGAKVIAVTSL 140 (243)
T ss_pred EEEEEeCCCCCCcchHHHHHHHhcCCeEEEEehh
Confidence 8876 3 33345555 45679988888643
No 331
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=48.37 E-value=16 Score=22.61 Aligned_cols=17 Identities=29% Similarity=0.540 Sum_probs=14.0
Q ss_pred cceEEEeCCCccccChh
Q 025896 22 LEAVLFDVDGTLCDSDP 38 (246)
Q Consensus 22 ~k~iifD~DGTL~~~~~ 38 (246)
.-.|+++-|||.+|++.
T Consensus 39 ~~~lvLeeDGT~Vd~Ee 55 (81)
T cd06537 39 VLTLVLEEDGTAVDSED 55 (81)
T ss_pred ceEEEEecCCCEEccHH
Confidence 35789999999998764
No 332
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=48.17 E-value=17 Score=22.41 Aligned_cols=17 Identities=29% Similarity=0.649 Sum_probs=13.9
Q ss_pred cceEEEeCCCccccChh
Q 025896 22 LEAVLFDVDGTLCDSDP 38 (246)
Q Consensus 22 ~k~iifD~DGTL~~~~~ 38 (246)
.-.|+++-|||.++++.
T Consensus 40 ~~~lvL~eDGT~Vd~Ee 56 (78)
T cd06539 40 LVTLVLEEDGTVVDTEE 56 (78)
T ss_pred CcEEEEeCCCCEEccHH
Confidence 45788999999998764
No 333
>PLN02423 phosphomannomutase
Probab=47.99 E-value=38 Score=26.07 Aligned_cols=35 Identities=9% Similarity=0.031 Sum_probs=27.0
Q ss_pred CcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHh
Q 025896 109 PISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISK 144 (246)
Q Consensus 109 ~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~ 144 (246)
+.+...+.+++|+++ ++++++|++....+...+..
T Consensus 25 i~~~~~~ai~~l~~~-i~fviaTGR~~~~~~~~~~~ 59 (245)
T PLN02423 25 ATPEMLEFMKELRKV-VTVGVVGGSDLSKISEQLGK 59 (245)
T ss_pred CCHHHHHHHHHHHhC-CEEEEECCcCHHHHHHHhcc
Confidence 446677899999987 99999999977666555544
No 334
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=47.93 E-value=17 Score=22.19 Aligned_cols=17 Identities=24% Similarity=0.526 Sum_probs=13.8
Q ss_pred cceEEEeCCCccccChh
Q 025896 22 LEAVLFDVDGTLCDSDP 38 (246)
Q Consensus 22 ~k~iifD~DGTL~~~~~ 38 (246)
.-.|+++-|||.++++.
T Consensus 38 ~~~l~L~eDGT~VddEe 54 (74)
T smart00266 38 PVTLVLEEDGTIVDDEE 54 (74)
T ss_pred CcEEEEecCCcEEccHH
Confidence 45688999999998764
No 335
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=47.56 E-value=1.3e+02 Score=23.24 Aligned_cols=91 Identities=20% Similarity=0.157 Sum_probs=46.2
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCH-HHHHHHHHhc---CCCCc-ceEEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEEE
Q 025896 113 LDKVKKWIEDRGLKRAAVTNAPR-ENAELMISKL---GLSDF-FQVVILGDECERAKPFPDPYFKALEMLKVSKDHTFVF 187 (246)
Q Consensus 113 ~~~~l~~l~~~g~~i~i~s~~~~-~~~~~~l~~~---~l~~~-f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~i 187 (246)
-.++|+++.+.|.++++-|+... ..++..++.+ +-.++ +=..++........-+...+..+-+++++ .+-+
T Consensus 102 n~~lL~~~A~tgkPvIlSTG~stl~EI~~Av~~~~~~~~~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~~----~vG~ 177 (241)
T PF03102_consen 102 NLPLLEYIAKTGKPVILSTGMSTLEEIERAVEVLREAGNEDLVLLHCVSSYPTPPEDVNLRVIPTLKERFGV----PVGY 177 (241)
T ss_dssp -HHHHHHHHTT-S-EEEE-TT--HHHHHHHHHHHHHHCT--EEEEEE-SSSS--GGG--TTHHHHHHHHSTS----EEEE
T ss_pred CHHHHHHHHHhCCcEEEECCCCCHHHHHHHHHHHHhcCCCCEEEEecCCCCCCChHHcChHHHHHHHHhcCC----CEEe
Confidence 35899999999999888777643 3444444443 33221 22233333333344455667777778885 5678
Q ss_pred ecChhhhH---HHHhcCCCEEEE
Q 025896 188 EDSVSGIK---AGVAAGLPVVGL 207 (246)
Q Consensus 188 gD~~~Di~---~a~~~G~~~i~v 207 (246)
.|+..++. +|-..|..+|=.
T Consensus 178 SDHt~g~~~~~~AvalGA~vIEK 200 (241)
T PF03102_consen 178 SDHTDGIEAPIAAVALGARVIEK 200 (241)
T ss_dssp EE-SSSSHHHHHHHHTT-SEEEE
T ss_pred CCCCCCcHHHHHHHHcCCeEEEE
Confidence 88876653 444567665544
No 336
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=47.42 E-value=92 Score=22.24 Aligned_cols=40 Identities=15% Similarity=0.258 Sum_probs=33.9
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEE
Q 025896 113 LDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVV 154 (246)
Q Consensus 113 ~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~ 154 (246)
..+.+.++++.|..++-+|..+....+.+.++.++. |+..
T Consensus 53 Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~--f~LL 92 (157)
T COG1225 53 FRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLT--FPLL 92 (157)
T ss_pred HHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCC--ceee
Confidence 456778888889999999999999999999999987 6643
No 337
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=47.30 E-value=2.5e+02 Score=26.44 Aligned_cols=22 Identities=36% Similarity=0.601 Sum_probs=17.7
Q ss_pred ccccCCcceEEEeCCCccccCh
Q 025896 16 LAKLAPLEAVLFDVDGTLCDSD 37 (246)
Q Consensus 16 ~~~~~~~k~iifD~DGTL~~~~ 37 (246)
.....++|.|+||--|||....
T Consensus 576 LE~~hkv~tVvFDKTGTLT~G~ 597 (951)
T KOG0207|consen 576 LEKAHKVKTVVFDKTGTLTEGK 597 (951)
T ss_pred HHHHhcCCEEEEcCCCceecce
Confidence 3345689999999999999744
No 338
>KOG2900 consensus Biotin synthase [Coenzyme transport and metabolism]
Probab=47.22 E-value=32 Score=26.51 Aligned_cols=51 Identities=12% Similarity=0.161 Sum_probs=38.0
Q ss_pred CcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCC
Q 025896 109 PISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDE 159 (246)
Q Consensus 109 ~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~ 159 (246)
-+..+.+.+++.+..|..+++--+.-...+-.-|+..|+..|-+.+-++.+
T Consensus 152 ~fk~IlE~ikevr~MgmEvCvTLGMv~~qQAkeLKdAGLTAYNHNlDTSRE 202 (380)
T KOG2900|consen 152 AFKRILEMIKEVRDMGMEVCVTLGMVDQQQAKELKDAGLTAYNHNLDTSRE 202 (380)
T ss_pred HHHHHHHHHHHHHcCCceeeeeeccccHHHHHHHHhccceecccCccchhh
Confidence 355677888999999998887777766677777888898877666554443
No 339
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=47.09 E-value=86 Score=21.63 Aligned_cols=49 Identities=14% Similarity=0.148 Sum_probs=32.0
Q ss_pred CCCCChHHHHHHHHHcCCCCCc-EEEEecC----h---hhhHHHHhcCCCEEEEcCC
Q 025896 162 RAKPFPDPYFKALEMLKVSKDH-TFVFEDS----V---SGIKAGVAAGLPVVGLTTR 210 (246)
Q Consensus 162 ~~kp~~~~~~~~~~~~~~~~~~-~~~igD~----~---~Di~~a~~~G~~~i~v~~~ 210 (246)
...|.++-+...++.+|+++.. +|+.+++ . .-.-+++.+|..-+.+..|
T Consensus 75 ~~~p~~~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildG 131 (138)
T cd01445 75 SMEPSEAEFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDG 131 (138)
T ss_pred CCCCCHHHHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCC
Confidence 3455667899999999998764 5556653 1 2223566688876655544
No 340
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=46.98 E-value=35 Score=31.06 Aligned_cols=39 Identities=15% Similarity=0.236 Sum_probs=32.9
Q ss_pred CcccHHHHHHHHHHc-CCeEEEEeCCCHHHHHHHHHhcCC
Q 025896 109 PISGLDKVKKWIEDR-GLKRAAVTNAPRENAELMISKLGL 147 (246)
Q Consensus 109 ~~~~~~~~l~~l~~~-g~~i~i~s~~~~~~~~~~l~~~~l 147 (246)
+.+.+.+.|++|.+. |..++|+|+.+...++..+...++
T Consensus 515 ~~~~~~~~L~~L~~d~g~~V~ivSGR~~~~l~~~~~~~~l 554 (726)
T PRK14501 515 PDKELRDLLRRLAADPNTDVAIISGRDRDTLERWFGDLPI 554 (726)
T ss_pred CCHHHHHHHHHHHcCCCCeEEEEeCCCHHHHHHHhCCCCe
Confidence 457888999999994 999999999999988888776543
No 341
>PF03603 DNA_III_psi: DNA polymerase III psi subunit; InterPro: IPR004615 DNA-directed DNA polymerase (2.7.7.7 from EC) catalyzes DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The enzyme also has 3' to 5' exonuclease activity. It has a core composed of alpha, epsilon and theta chains, that associate with a tau subunit which allows the core dimerization to form the PolIII' complex. PolIII' associates with the gamma complex (gamma, delta, delta', psi and chi chains) and with the beta chain. This family is the psi subunit, the small subunit of the DNA polymerase III holoenzyme in Escherichia coli and related species, whose exact function is not known. It appears to have a narrow taxonomic distribution, being restricted to the gammaproteobacteria.; GO: 0003887 DNA-directed DNA polymerase activity, 0008408 3'-5' exonuclease activity, 0006260 DNA replication; PDB: 1EM8_B 3GLI_O 3SXU_B.
Probab=46.97 E-value=63 Score=22.15 Aligned_cols=104 Identities=10% Similarity=0.101 Sum_probs=48.0
Q ss_pred HHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEEEecChhhhHHH
Q 025896 118 KWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEMLKVSKDHTFVFEDSVSGIKAG 197 (246)
Q Consensus 118 ~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~igD~~~Di~~a 197 (246)
..|++.|+..+.+.... .... .....+.+-...++.++..... -.+ .+..+++.++++++++.++ ....+.+.
T Consensus 7 ~~LqeMGItqW~Lr~P~--~L~g-~~~i~lp~~~rLliVs~~~p~~-~~~-L~~dVLrsl~L~~~q~~~l--tpeq~~~L 79 (128)
T PF03603_consen 7 WLLQEMGITQWQLRRPE--VLQG-EIAISLPESCRLLIVSDELPQL-DDP-LFQDVLRSLKLTPEQVLHL--TPEQLAML 79 (128)
T ss_dssp HHHHHCT--EEEES-GG--GTS---S-----TT--EEEE-SS---T-TSH-HHHHHHHHTT--GGGEEEE---CCGGGGS
T ss_pred HHHHHcCCCeEEeCCcc--ccCC-CccccCcccceEEEEeCCCCCc-cCh-HHHHHHHHcCCCHHHhhcc--CHHHHhhC
Confidence 35778888888886552 1111 1222344556677777654322 133 8999999999999999998 55666666
Q ss_pred HhcCCCEEEEcCCCChhhhhccCCcEEecCCCC
Q 025896 198 VAAGLPVVGLTTRNPEHVLLEANPTFLIKDYDD 230 (246)
Q Consensus 198 ~~~G~~~i~v~~~~~~~~~~~~~~~~~i~~~~e 230 (246)
..-...-+|..+...... ..+..+...++++
T Consensus 80 ~~~~~~~~W~lg~~~~~~--~~~~~l~Sp~L~~ 110 (128)
T PF03603_consen 80 PEDHPCWCWFLGCEQQEI--LAGKQLQSPSLSE 110 (128)
T ss_dssp -TT-B-EEEEES--S--S--SBS-EEEE--HHH
T ss_pred cCCCCCcEEEccCCCccc--ccceeecCcCHHH
Confidence 655555666654432221 2234445555555
No 342
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=46.78 E-value=58 Score=26.59 Aligned_cols=57 Identities=16% Similarity=0.191 Sum_probs=38.0
Q ss_pred HHHHHcCCCCCcEE-EEecC-h--hhhHHHHhcCCCEEEEcCCCChhh-hhccCCcEEecCC
Q 025896 172 KALEMLKVSKDHTF-VFEDS-V--SGIKAGVAAGLPVVGLTTRNPEHV-LLEANPTFLIKDY 228 (246)
Q Consensus 172 ~~~~~~~~~~~~~~-~igD~-~--~Di~~a~~~G~~~i~v~~~~~~~~-~~~~~~~~~i~~~ 228 (246)
+.+++.++.|.+.+ .+|=+ + .-++.|+..|..++.++++....+ ..+.++++++.+-
T Consensus 157 ~alk~~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~ 218 (339)
T COG1064 157 RALKKANVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSS 218 (339)
T ss_pred eehhhcCCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcC
Confidence 34566788776544 44433 3 577888889988999988854433 3455788888765
No 343
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=46.76 E-value=61 Score=21.52 Aligned_cols=34 Identities=18% Similarity=0.109 Sum_probs=24.9
Q ss_pred cccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhc
Q 025896 110 ISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKL 145 (246)
Q Consensus 110 ~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~ 145 (246)
.+++.+.++.++++|.+++.+|+... +.....+.
T Consensus 56 t~e~i~~~~~a~~~g~~iI~IT~~~~--l~~~~~~~ 89 (119)
T cd05017 56 TEETLSAVEQAKERGAKIVAITSGGK--LLEMAREH 89 (119)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCch--HHHHHHHc
Confidence 46688899999999999999997642 44444433
No 344
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=46.69 E-value=1.6e+02 Score=24.07 Aligned_cols=100 Identities=21% Similarity=0.237 Sum_probs=52.0
Q ss_pred cHHHHHHHHHHc-CCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEEEecC
Q 025896 112 GLDKVKKWIEDR-GLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEMLKVSKDHTFVFEDS 190 (246)
Q Consensus 112 ~~~~~l~~l~~~-g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~igD~ 190 (246)
.+.++|+.|.+. ++++++.--+.+.....+.+.+.-.+ .+...... ...-|..+++... ++||||
T Consensus 201 ~i~~~l~~L~~~~~~~vi~~~hn~p~~~~~i~~~l~~~~---~v~~~~~l-----~~~~~l~ll~~a~------~vvgdS 266 (346)
T PF02350_consen 201 QILEALKALAERQNVPVIFPLHNNPRGSDIIIEKLKKYD---NVRLIEPL-----GYEEYLSLLKNAD------LVVGDS 266 (346)
T ss_dssp HHHHHHHHHHHHTTEEEEEE--S-HHHHHHHHHHHTT-T---TEEEE---------HHHHHHHHHHES------EEEESS
T ss_pred HHHHHHHHHHhcCCCcEEEEecCCchHHHHHHHHhcccC---CEEEECCC-----CHHHHHHHHhcce------EEEEcC
Confidence 456677777665 56555543333333332222221111 22211111 1223455555433 489999
Q ss_pred hhhhH-HHHhcCCCEEEEcCCCChhhhhccCCcEEec
Q 025896 191 VSGIK-AGVAAGLPVVGLTTRNPEHVLLEANPTFLIK 226 (246)
Q Consensus 191 ~~Di~-~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i~ 226 (246)
- .+. .|-..|.+++-++..+++++....+...++.
T Consensus 267 s-GI~eEa~~lg~P~v~iR~~geRqe~r~~~~nvlv~ 302 (346)
T PF02350_consen 267 S-GIQEEAPSLGKPVVNIRDSGERQEGRERGSNVLVG 302 (346)
T ss_dssp H-HHHHHGGGGT--EEECSSS-S-HHHHHTTSEEEET
T ss_pred c-cHHHHHHHhCCeEEEecCCCCCHHHHhhcceEEeC
Confidence 9 888 9999999999997777777777666666555
No 345
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=46.37 E-value=33 Score=22.95 Aligned_cols=27 Identities=11% Similarity=0.190 Sum_probs=22.8
Q ss_pred cccHHHHHHHHHHcCCeEEEEeCCCHH
Q 025896 110 ISGLDKVKKWIEDRGLKRAAVTNAPRE 136 (246)
Q Consensus 110 ~~~~~~~l~~l~~~g~~i~i~s~~~~~ 136 (246)
.+++.+.++.++++|.+++.+|+....
T Consensus 60 t~~~~~~~~~a~~~g~~vi~iT~~~~s 86 (120)
T cd05710 60 TKETVAAAKFAKEKGATVIGLTDDEDS 86 (120)
T ss_pred ChHHHHHHHHHHHcCCeEEEEECCCCC
Confidence 467889999999999999999987544
No 346
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=46.36 E-value=1.4e+02 Score=24.63 Aligned_cols=37 Identities=19% Similarity=0.255 Sum_probs=26.5
Q ss_pred cHHHHHHHHHHcCCeEEEEeCCCH-----HHHHHHHHhcCCC
Q 025896 112 GLDKVKKWIEDRGLKRAAVTNAPR-----ENAELMISKLGLS 148 (246)
Q Consensus 112 ~~~~~l~~l~~~g~~i~i~s~~~~-----~~~~~~l~~~~l~ 148 (246)
.+..+|..++++|+++++-+++.. ..++++.+..|+.
T Consensus 59 ~L~~~L~~~~~~gIkvI~NaGg~np~~~a~~v~eia~e~Gl~ 100 (362)
T PF07287_consen 59 DLRPLLPAAAEKGIKVITNAGGLNPAGCADIVREIARELGLS 100 (362)
T ss_pred HHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHHHHHhcCCC
Confidence 466788899999999987776532 3356666677776
No 347
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=46.10 E-value=43 Score=20.79 Aligned_cols=24 Identities=8% Similarity=0.199 Sum_probs=19.6
Q ss_pred ccHHHHHHHHHHcCCeEEEEeCCC
Q 025896 111 SGLDKVKKWIEDRGLKRAAVTNAP 134 (246)
Q Consensus 111 ~~~~~~l~~l~~~g~~i~i~s~~~ 134 (246)
....++++.|++.|+++.+.|++.
T Consensus 53 ~~~~~i~~~L~~~G~~~~~~~~~~ 76 (85)
T cd04906 53 EELAELLEDLKSAGYEVVDLSDDE 76 (85)
T ss_pred HHHHHHHHHHHHCCCCeEECCCCH
Confidence 347788899999999998887774
No 348
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=46.06 E-value=40 Score=22.51 Aligned_cols=30 Identities=13% Similarity=0.219 Sum_probs=23.5
Q ss_pred cccHHHHHHHHHHcCCeEEEEeCCCHHHHH
Q 025896 110 ISGLDKVKKWIEDRGLKRAAVTNAPRENAE 139 (246)
Q Consensus 110 ~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~ 139 (246)
..+..+.++.+++.|.+++.+|+.....+.
T Consensus 66 ~~~~~~~~~~ak~~g~~vi~iT~~~~~~l~ 95 (131)
T PF01380_consen 66 TRELIELLRFAKERGAPVILITSNSESPLA 95 (131)
T ss_dssp THHHHHHHHHHHHTTSEEEEEESSTTSHHH
T ss_pred chhhhhhhHHHHhcCCeEEEEeCCCCCchh
Confidence 456788899999999999999987554443
No 349
>PF14213 DUF4325: Domain of unknown function (DUF4325)
Probab=44.80 E-value=45 Score=20.11 Aligned_cols=30 Identities=27% Similarity=0.516 Sum_probs=23.8
Q ss_pred ceEEEeCCCccccChhhHHHHHHHHHHHhc
Q 025896 23 EAVLFDVDGTLCDSDPLHHYAFREMLQEIG 52 (246)
Q Consensus 23 k~iifD~DGTL~~~~~~~~~~~~~~~~~~~ 52 (246)
+-|.+||+|+-.-+.....+++-.++.+++
T Consensus 18 ~~V~lDF~gv~~~~ssFl~eafg~l~~~~~ 47 (74)
T PF14213_consen 18 EKVVLDFEGVESITSSFLNEAFGQLVREFG 47 (74)
T ss_pred CeEEEECCCcccccHHHHHHHHHHHHHHcC
Confidence 459999999977666777788888888873
No 350
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=44.79 E-value=2.2e+02 Score=25.07 Aligned_cols=95 Identities=17% Similarity=0.163 Sum_probs=50.1
Q ss_pred ccHHHHH-HHHHHcCCeEEEEeCCCHHH----HHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHH---HHcCCCC-
Q 025896 111 SGLDKVK-KWIEDRGLKRAAVTNAPREN----AELMISKLGLSDFFQVVILGDECERAKPFPDPYFKAL---EMLKVSK- 181 (246)
Q Consensus 111 ~~~~~~l-~~l~~~g~~i~i~s~~~~~~----~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~---~~~~~~~- 181 (246)
+|+.+-+ +.+++.|.+++++++..... +...++..|+. .++.++...+ ..|+ .+....++ .+.+.+.
T Consensus 195 ~g~l~~l~~~l~~~g~k~~iV~d~~v~~~~~~l~~~L~~~g~~-v~~~v~p~~E--~~ks-l~~v~~~~~~l~~~~~~r~ 270 (542)
T PRK14021 195 EGAMNHLPQVLGPKPVKVALIHTQPVQRHSDRARTLLRQGGYE-VSDIVIPDAE--AGKT-IEVANGIWQRLGNEGFTRS 270 (542)
T ss_pred CChHHHHHHHHHhcCCeEEEEECccHHHHHHHHHHHHHhCCCc-eEEEEeCCCc--ccCC-HHHHHHHHHHHHhcCCCCC
Confidence 4554333 44555566777777654322 22334444552 3443332222 1122 23333332 3345433
Q ss_pred CcEEEEecCh-hhhHHHHh----cCCCEEEEcC
Q 025896 182 DHTFVFEDSV-SGIKAGVA----AGLPVVGLTT 209 (246)
Q Consensus 182 ~~~~~igD~~-~Di~~a~~----~G~~~i~v~~ 209 (246)
+-++.||-+. .|+..+-+ .|++.+.+.+
T Consensus 271 D~IIAIGGGsv~D~AKfvA~~y~rGi~~i~vPT 303 (542)
T PRK14021 271 DAIVGLGGGAATDLAGFVAATWMRGIRYVNCPT 303 (542)
T ss_pred cEEEEEcChHHHHHHHHHHHHHHcCCCEEEeCC
Confidence 4467798877 89876665 5999999977
No 351
>PF05240 APOBEC_C: APOBEC-like C-terminal domain; InterPro: IPR007904 This domain is found at the C terminus of the Apolipoprotein B mRNA editing enzyme. Apobec-1 catalyzes C to U editing of apolipoprotein B (apoB) mRNA in the mammalian intestine. C to U RNA editing of mammalian apolipoprotein B (apoB) RNA is a site-specific posttranscriptional modification in which a single cytidine is enzymatically deaminated to uridine, thereby generating a UAA stop codon in the edited mRNA. The function of this domain is currently unknown.; GO: 0008270 zinc ion binding, 0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines; PDB: 2NYT_D.
Probab=44.72 E-value=33 Score=19.56 Aligned_cols=23 Identities=9% Similarity=0.110 Sum_probs=16.2
Q ss_pred ccHHHHHHHHHHcCCeEEEEeCC
Q 025896 111 SGLDKVKKWIEDRGLKRAAVTNA 133 (246)
Q Consensus 111 ~~~~~~l~~l~~~g~~i~i~s~~ 133 (246)
|+..+-|+.|.+.|++|.|.+-.
T Consensus 2 ~~~qegLr~L~~aG~~v~iM~~~ 24 (55)
T PF05240_consen 2 PDYQEGLRRLCQAGAQVSIMTYS 24 (55)
T ss_dssp HHHHHHHHHHHHTT-EEEE--HH
T ss_pred cHHHHHHHHHHHCCCeEEecCcH
Confidence 45678899999999999988643
No 352
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=44.49 E-value=76 Score=19.74 Aligned_cols=38 Identities=18% Similarity=0.177 Sum_probs=26.6
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcce
Q 025896 113 LDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQ 152 (246)
Q Consensus 113 ~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~ 152 (246)
...+.++++++|..+.+..-. ......++..|+...|.
T Consensus 59 L~~l~~~~~~~g~~v~i~~~~--~~~~~~l~~~gl~~~~~ 96 (99)
T cd07043 59 LLGAYKRARAAGGRLVLVNVS--PAVRRVLELTGLDRLFP 96 (99)
T ss_pred HHHHHHHHHHcCCeEEEEcCC--HHHHHHHHHhCcceeee
Confidence 346677788888876665443 57888888888876543
No 353
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=44.45 E-value=99 Score=22.41 Aligned_cols=60 Identities=28% Similarity=0.384 Sum_probs=35.6
Q ss_pred HHHcCCCCCcEEEEecChhhhH-HHHhcCCCEEEEcCCCChhhhhccCCcEEecCCCChhhHHHHhhh
Q 025896 174 LEMLKVSKDHTFVFEDSVSGIK-AGVAAGLPVVGLTTRNPEHVLLEANPTFLIKDYDDPKLWSALEEL 240 (246)
Q Consensus 174 ~~~~~~~~~~~~~igD~~~Di~-~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i~~~~el~~~~~l~~~ 240 (246)
|+++|++-.....| ++..|+. ++.+.|.+++.-......+ ....+++++-+| +...+..+
T Consensus 1 l~~~gip~~~~~~i-~~~~~l~~a~~~iG~P~vlK~~~~GYD----GkGq~~i~~~~d--l~~a~~~~ 61 (172)
T PF02222_consen 1 LDELGIPTAPYATI-DSLEDLEEAAESIGFPAVLKTRRGGYD----GKGQFVIRSEED--LEKAWQEL 61 (172)
T ss_dssp HHHTT--B-EEEEE-SSHHHHHHHHHHHTSSEEEEESSSSCT----TTTEEEESSGGG--HHHHHHHT
T ss_pred CcccCCCCCCeEEE-CCHHHHHHHHHHcCCCEEEEccCcCcC----CCccEEECCHHH--HHHHHHhc
Confidence 46677776666666 5555764 4566799998884432222 234578888888 55544444
No 354
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=44.09 E-value=85 Score=26.18 Aligned_cols=81 Identities=15% Similarity=0.202 Sum_probs=56.2
Q ss_pred CCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEEE
Q 025896 108 KPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEMLKVSKDHTFVF 187 (246)
Q Consensus 108 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~i 187 (246)
.-.|++..++..+.+- +++++.|.........++..++-..+|...+...... .+.+. |.+-+...+.+...+++|
T Consensus 252 ~kRp~l~~fl~~ls~~-~~l~~ft~s~~~y~~~v~d~l~~~k~~~~~lfr~sc~--~~~G~-~ikDis~i~r~l~~viiI 327 (390)
T COG5190 252 SKRPELDYFLGKLSKI-HELVYFTASVKRYADPVLDILDSDKVFSHRLFRESCV--SYLGV-YIKDISKIGRSLDKVIII 327 (390)
T ss_pred cCChHHHHHHhhhhhh-EEEEEEecchhhhcchHHHhccccceeehhhhcccce--eccCc-hhhhHHhhccCCCceEEe
Confidence 4568888999888887 8999999998888888777766555554444333322 22223 444556667888999999
Q ss_pred ecChh
Q 025896 188 EDSVS 192 (246)
Q Consensus 188 gD~~~ 192 (246)
..++.
T Consensus 328 d~~p~ 332 (390)
T COG5190 328 DNSPA 332 (390)
T ss_pred eCChh
Confidence 99984
No 355
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=44.02 E-value=1.4e+02 Score=23.14 Aligned_cols=73 Identities=11% Similarity=0.074 Sum_probs=39.9
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCc-ceEEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEEEecCh
Q 025896 113 LDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDF-FQVVILGDECERAKPFPDPYFKALEMLKVSKDHTFVFEDSV 191 (246)
Q Consensus 113 ~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~-f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~igD~~ 191 (246)
+.++++...++|++++++-+. +..++...+++.-. | .+ +....+ +.-. ++-...+++...-+..++++||=+.
T Consensus 94 ~~~ll~~~~~~~~~v~llG~~-~~v~~~a~~~l~~~-y~l~-i~g~~~-Gyf~--~~e~~~i~~~I~~s~~dil~VglG~ 167 (243)
T PRK03692 94 WEALMARAGKEGTPVFLVGGK-PEVLAQTEAKLRTQ-WNVN-IVGSQD-GYFT--PEQRQALFERIHASGAKIVTVAMGS 167 (243)
T ss_pred HHHHHHHHHhcCCeEEEECCC-HHHHHHHHHHHHHH-hCCE-EEEEeC-CCCC--HHHHHHHHHHHHhcCCCEEEEECCC
Confidence 457777777888999988444 44444433332111 1 11 111111 2222 3334567777777777888887664
No 356
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=43.92 E-value=76 Score=25.20 Aligned_cols=51 Identities=27% Similarity=0.311 Sum_probs=39.6
Q ss_pred CCCCCChHHHHHHHHHcCCCCCcEEEEecChhhhHHHHh------cCCCEEEEcCCC
Q 025896 161 ERAKPFPDPYFKALEMLKVSKDHTFVFEDSVSGIKAGVA------AGLPVVGLTTRN 211 (246)
Q Consensus 161 ~~~kp~~~~~~~~~~~~~~~~~~~~~igD~~~Di~~a~~------~G~~~i~v~~~~ 211 (246)
....|.++.|..++.++|++.+.+|++=|..+...+++. +|+.-+.+..|+
T Consensus 69 ~~~lp~~e~fa~~~~~~GI~~d~tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~iLdGG 125 (285)
T COG2897 69 PHMLPSPEQFAKLLGELGIRNDDTVVVYDDGGGFFAARAWWLLRYLGHENVRILDGG 125 (285)
T ss_pred CCCCCCHHHHHHHHHHcCCCCCCEEEEECCCCCeehHHHHHHHHHcCCCceEEecCC
Confidence 467788899999999999998887777665666666554 799877777663
No 357
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=43.88 E-value=2.3e+02 Score=25.00 Aligned_cols=87 Identities=9% Similarity=-0.018 Sum_probs=52.4
Q ss_pred cHHHHHHHHHHcCCeEEEEeCCCH-HHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEEEecC
Q 025896 112 GLDKVKKWIEDRGLKRAAVTNAPR-ENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEMLKVSKDHTFVFEDS 190 (246)
Q Consensus 112 ~~~~~l~~l~~~g~~i~i~s~~~~-~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~igD~ 190 (246)
++...|..+++.+-++++++-.+. ...+.+.+.+++. ++.+..... -+......-++..|+ -++|||.
T Consensus 95 Dil~al~~a~~~~~~iavv~~~~~~~~~~~~~~~l~~~--i~~~~~~~~-----~e~~~~v~~lk~~G~----~~vvG~~ 163 (538)
T PRK15424 95 DVMQALARARKLTSSIGVVTYQETIPALVAFQKTFNLR--IEQRSYVTE-----EDARGQINELKANGI----EAVVGAG 163 (538)
T ss_pred HHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCc--eEEEEecCH-----HHHHHHHHHHHHCCC----CEEEcCc
Confidence 456666777777788999877654 3345555555654 332221110 011122233344465 4788997
Q ss_pred hhhhHHHHhcCCCEEEEcCC
Q 025896 191 VSGIKAGVAAGLPVVGLTTR 210 (246)
Q Consensus 191 ~~Di~~a~~~G~~~i~v~~~ 210 (246)
.. ...|.++|+..+++..+
T Consensus 164 ~~-~~~A~~~g~~g~~~~s~ 182 (538)
T PRK15424 164 LI-TDLAEEAGMTGIFIYSA 182 (538)
T ss_pred hH-HHHHHHhCCceEEecCH
Confidence 76 78899999999998754
No 358
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=43.86 E-value=66 Score=20.64 Aligned_cols=37 Identities=14% Similarity=0.066 Sum_probs=27.0
Q ss_pred HHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcce
Q 025896 114 DKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQ 152 (246)
Q Consensus 114 ~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~ 152 (246)
..+.+.++++|.++.++.-. ......++..|+...|+
T Consensus 65 ~~~~~~~~~~~~~~~l~~~~--~~~~~~l~~~~l~~~~~ 101 (108)
T TIGR00377 65 LGRYKQVRRVGGQLVLVSVS--PRVARLLDITGLLRIIP 101 (108)
T ss_pred HHHHHHHHhcCCEEEEEeCC--HHHHHHHHHhChhheec
Confidence 45667778888888777544 67778888888876655
No 359
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=43.78 E-value=21 Score=22.04 Aligned_cols=17 Identities=24% Similarity=0.417 Sum_probs=13.6
Q ss_pred cceEEEeCCCccccChh
Q 025896 22 LEAVLFDVDGTLCDSDP 38 (246)
Q Consensus 22 ~k~iifD~DGTL~~~~~ 38 (246)
.-.|+++-|||.++++.
T Consensus 40 ~~~lvL~eDGTeVddEe 56 (78)
T cd01615 40 PVTLVLEEDGTEVDDEE 56 (78)
T ss_pred CeEEEEeCCCcEEccHH
Confidence 34588999999998764
No 360
>cd08573 GDPD_GDE1 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE1 (also known as MIR16, membrane interacting protein of RGS16) and their metazoan homologs. GDE1 is widely expressed in mammalian tissues, including the heart, brain, liver, and kidney. It shows sequence homology to bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. GDE1 has been characterized as GPI-GDE (EC 3.1.4.44) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate glycerol phosphate and inositol. It functions as an integral membrane-bound glycoprotein interacting with regulator of G protein signaling protein RGS16, and is modulated by G
Probab=43.61 E-value=64 Score=25.06 Aligned_cols=35 Identities=14% Similarity=0.241 Sum_probs=28.5
Q ss_pred HHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCC
Q 025896 114 DKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLS 148 (246)
Q Consensus 114 ~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~ 148 (246)
.++++++|+.|+++.+.|-++...++..++.+|++
T Consensus 218 ~~~v~~~~~~G~~v~vWTVn~~~~~~~l~~~~GVd 252 (258)
T cd08573 218 SAYVRYWRARGIRVIAWTVNTPTEKQYFAKTLNVP 252 (258)
T ss_pred HHHHHHHHHCCCEEEEEecCCHHHHHHHHHHhCCC
Confidence 57889999999999999998877777666536764
No 361
>PHA01735 hypothetical protein
Probab=43.53 E-value=71 Score=19.06 Aligned_cols=33 Identities=15% Similarity=0.325 Sum_probs=22.9
Q ss_pred CCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHH
Q 025896 107 LKPISGLDKVKKWIEDRGLKRAAVTNAPRENAE 139 (246)
Q Consensus 107 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~ 139 (246)
-.-..+....+++|+++++.=+.+.|++....-
T Consensus 29 eATtaDL~AA~d~Lk~NdItgv~~~gspl~~La 61 (76)
T PHA01735 29 EATTADLRAACDWLKSNDITGVAVDGSPLAKLA 61 (76)
T ss_pred cccHHHHHHHHHHHHHCCCceeeCCCCHHHHHH
Confidence 334456778889999998877777777544433
No 362
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=43.51 E-value=51 Score=27.63 Aligned_cols=42 Identities=17% Similarity=0.181 Sum_probs=29.6
Q ss_pred CCCcccHHHHHHHHHHcCCeEEEE-eCCC---HHHHHHHHHhcCCC
Q 025896 107 LKPISGLDKVKKWIEDRGLKRAAV-TNAP---RENAELMISKLGLS 148 (246)
Q Consensus 107 ~~~~~~~~~~l~~l~~~g~~i~i~-s~~~---~~~~~~~l~~~~l~ 148 (246)
...+|.+.++++.+++.|+++.+. ||+. .......+...+++
T Consensus 85 pl~~~~l~eLl~~lk~~gi~taI~~TnG~~l~~~e~~~~L~~~gld 130 (404)
T TIGR03278 85 VSCYPELEELTKGLSDLGLPIHLGYTSGKGFDDPEIAEFLIDNGVR 130 (404)
T ss_pred cccCHHHHHHHHHHHhCCCCEEEeCCCCcccCCHHHHHHHHHcCCC
Confidence 345788999999999999999985 8864 23334444444554
No 363
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=43.48 E-value=1.4e+02 Score=23.19 Aligned_cols=33 Identities=15% Similarity=0.220 Sum_probs=15.8
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhc
Q 025896 113 LDKVKKWIEDRGLKRAAVTNAPRENAELMISKL 145 (246)
Q Consensus 113 ~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~ 145 (246)
+..++.+..+.|.+++=++......+..++..+
T Consensus 69 Vkall~~y~~~GLRlIev~k~~L~~l~~l~~~l 101 (249)
T PF05673_consen 69 VKALLNEYADQGLRLIEVSKEDLGDLPELLDLL 101 (249)
T ss_pred HHHHHHHHhhcCceEEEECHHHhccHHHHHHHH
Confidence 334445555555555555554444444444443
No 364
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=43.45 E-value=1.7e+02 Score=23.31 Aligned_cols=96 Identities=15% Similarity=0.121 Sum_probs=63.2
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCCC-----CCCChHHHHHHHHHcCCCCCcEEEE
Q 025896 113 LDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDECER-----AKPFPDPYFKALEMLKVSKDHTFVF 187 (246)
Q Consensus 113 ~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~-----~kp~~~~~~~~~~~~~~~~~~~~~i 187 (246)
..++|+..+++||-+.-+--.+.+.++.+++...-.. -+.++-...... ...-....+.++++++++- +++-
T Consensus 6 ~~~ll~~Ake~~yAvpAfN~~nlE~~~AileaA~e~~-sPvIiq~S~g~~~y~gg~~~~~~~v~~~a~~~~vPV--~lHl 82 (286)
T COG0191 6 MKELLDKAKENGYAVPAFNINNLETLQAILEAAEEEK-SPVIIQFSEGAAKYAGGADSLAHMVKALAEKYGVPV--ALHL 82 (286)
T ss_pred HHHHHHHHHHcCCceeeeeecCHHHHHHHHHHHHHhC-CCEEEEecccHHHHhchHHHHHHHHHHHHHHCCCCE--EEEC
Confidence 4788999999999988877777788888877542111 122222211111 1222345567788888643 5555
Q ss_pred --ecChhhhHHHHhcCCCEEEEcCCC
Q 025896 188 --EDSVSGIKAGVAAGLPVVGLTTRN 211 (246)
Q Consensus 188 --gD~~~Di~~a~~~G~~~i~v~~~~ 211 (246)
|++..++..+..+|+++++++...
T Consensus 83 DHg~~~~~~~~ai~~GFsSvMiDgS~ 108 (286)
T COG0191 83 DHGASFEDCKQAIRAGFSSVMIDGSH 108 (286)
T ss_pred CCCCCHHHHHHHHhcCCceEEecCCc
Confidence 556799999999999999998764
No 365
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=43.09 E-value=25 Score=21.03 Aligned_cols=20 Identities=25% Similarity=0.134 Sum_probs=13.5
Q ss_pred HHHHHHcCCCCCcEEEEecC
Q 025896 171 FKALEMLKVSKDHTFVFEDS 190 (246)
Q Consensus 171 ~~~~~~~~~~~~~~~~igD~ 190 (246)
...|++.|+.+.+++.|||-
T Consensus 46 ~~~L~~~G~~~GD~V~Ig~~ 65 (69)
T PF09269_consen 46 EKALRKAGAKEGDTVRIGDY 65 (69)
T ss_dssp HHHHHTTT--TT-EEEETTE
T ss_pred HHHHHHcCCCCCCEEEEcCE
Confidence 45677788999999999984
No 366
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=42.91 E-value=79 Score=21.68 Aligned_cols=37 Identities=14% Similarity=0.137 Sum_probs=27.4
Q ss_pred cHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCC
Q 025896 112 GLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLS 148 (246)
Q Consensus 112 ~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~ 148 (246)
.+.++.+++++.|+.++.+|..+...+....+..++.
T Consensus 50 ~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~ 86 (149)
T cd03018 50 ALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLT 86 (149)
T ss_pred HHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCC
Confidence 3456667777778998888888777777777777653
No 367
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=42.43 E-value=1.5e+02 Score=24.45 Aligned_cols=32 Identities=16% Similarity=0.260 Sum_probs=25.4
Q ss_pred CCCCcEEEEecChh---hhHHHHhcCCCEEEEcCC
Q 025896 179 VSKDHTFVFEDSVS---GIKAGVAAGLPVVGLTTR 210 (246)
Q Consensus 179 ~~~~~~~~igD~~~---Di~~a~~~G~~~i~v~~~ 210 (246)
.+|+=++..||+.. -..+|...|++++++..|
T Consensus 92 ~~Pd~vlv~GD~~~~la~alaA~~~~IPv~HveaG 126 (365)
T TIGR03568 92 LKPDLVVVLGDRFEMLAAAIAAALLNIPIAHIHGG 126 (365)
T ss_pred hCCCEEEEeCCchHHHHHHHHHHHhCCcEEEEECC
Confidence 56787889999985 445667789999999877
No 368
>cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes and in arabidopsis. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. This alignment contains only sequences from the GlyRS form which heterotetramerizes. The homodimer form of GlyRS is in a different family of class II aaRS. Class II assignment is based upon structure and the presence of three characteristic sequence motifs.
Probab=42.42 E-value=37 Score=26.22 Aligned_cols=40 Identities=25% Similarity=0.282 Sum_probs=32.6
Q ss_pred hHHHHHHHHHcCCCC--CcEEEEecCh-hhhHHHHhcCCCEEEE
Q 025896 167 PDPYFKALEMLKVSK--DHTFVFEDSV-SGIKAGVAAGLPVVGL 207 (246)
Q Consensus 167 ~~~~~~~~~~~~~~~--~~~~~igD~~-~Di~~a~~~G~~~i~v 207 (246)
.+.|..-++.+|++| .++-||.|.. +-.-.|...|+- +|.
T Consensus 88 QelYL~SL~~lGid~~~hDIRFVEDnWEsPTLGAwGLGWE-VWl 130 (279)
T cd00733 88 QELYLESLEALGINPKEHDIRFVEDNWESPTLGAWGLGWE-VWL 130 (279)
T ss_pred HHHHHHHHHHhCCCccccCeeEeecCCCCCcccccccccE-EEE
Confidence 356778899999987 5699999999 888999999986 444
No 369
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=42.21 E-value=23 Score=21.98 Aligned_cols=16 Identities=19% Similarity=0.482 Sum_probs=13.4
Q ss_pred ceEEEeCCCccccChh
Q 025896 23 EAVLFDVDGTLCDSDP 38 (246)
Q Consensus 23 k~iifD~DGTL~~~~~ 38 (246)
-.|+++-|||.++++.
T Consensus 43 ~~lvL~eDGT~VddEe 58 (80)
T cd06536 43 ITLVLAEDGTIVEDED 58 (80)
T ss_pred eEEEEecCCcEEccHH
Confidence 4688999999998764
No 370
>PRK10425 DNase TatD; Provisional
Probab=42.20 E-value=1.6e+02 Score=22.88 Aligned_cols=34 Identities=12% Similarity=0.064 Sum_probs=23.1
Q ss_pred cccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHH
Q 025896 110 ISGLDKVKKWIEDRGLKRAAVTNAPRENAELMIS 143 (246)
Q Consensus 110 ~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~ 143 (246)
.++..+++++.++.|+.-.++++.+.......++
T Consensus 14 ~~d~~~vl~~a~~~gv~~~i~~~~~~~~~~~~~~ 47 (258)
T PRK10425 14 AKDRDDVVARAFAAGVNGMLITGTNLRESQQAQK 47 (258)
T ss_pred hccHHHHHHHHHHCCCCEEEEeCCCHHHHHHHHH
Confidence 4567888999999997666666665555444444
No 371
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=41.86 E-value=57 Score=19.73 Aligned_cols=40 Identities=25% Similarity=0.302 Sum_probs=33.7
Q ss_pred CCCChHHHHHHHHHcCCCCCcEEEEecChhhhHHHHhcCC
Q 025896 163 AKPFPDPYFKALEMLKVSKDHTFVFEDSVSGIKAGVAAGL 202 (246)
Q Consensus 163 ~kp~~~~~~~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~ 202 (246)
..|-...++.+++++.+++..+..|-+.--.+..++.+|-
T Consensus 25 ~aPftAvlkfaAEeFkv~~~TsAiiTndGvGINP~qtAGn 64 (82)
T cd01766 25 STPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGN 64 (82)
T ss_pred cCchHHHHHHHHHhcCCCccceeEEecCccccChhhcccc
Confidence 4566778899999999999999888777788888888884
No 372
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=41.80 E-value=65 Score=22.13 Aligned_cols=22 Identities=5% Similarity=0.149 Sum_probs=11.7
Q ss_pred HHHHHHHHHHcCCeEEEEeCCC
Q 025896 113 LDKVKKWIEDRGLKRAAVTNAP 134 (246)
Q Consensus 113 ~~~~l~~l~~~g~~i~i~s~~~ 134 (246)
..++++..++.+..++++|+..
T Consensus 42 ~e~~v~aa~e~~adii~iSsl~ 63 (132)
T TIGR00640 42 PEEIARQAVEADVHVVGVSSLA 63 (132)
T ss_pred HHHHHHHHHHcCCCEEEEcCch
Confidence 3455555555555555555543
No 373
>PRK08304 stage V sporulation protein AD; Validated
Probab=41.73 E-value=91 Score=25.40 Aligned_cols=66 Identities=24% Similarity=0.349 Sum_probs=43.2
Q ss_pred cCCCCcceEEEecCCCCCC---CCC----hHHHHHHHHHcCCCCCc--EEEEecChhhh----HHHHhcCCCEEEEcCC
Q 025896 145 LGLSDFFQVVILGDECERA---KPF----PDPYFKALEMLKVSKDH--TFVFEDSVSGI----KAGVAAGLPVVGLTTR 210 (246)
Q Consensus 145 ~~l~~~f~~~~~~~~~~~~---kp~----~~~~~~~~~~~~~~~~~--~~~igD~~~Di----~~a~~~G~~~i~v~~~ 210 (246)
-.+.++||.++.-...+.. +.. .++.+.++++.|+++++ .+++||..+-. ..++..|+++..+...
T Consensus 32 gpl~~~fd~~~~d~~~Ge~swEkAeseLa~eAa~~ALekAGI~~~DID~lI~Gdll~Q~~sAs~vA~~LGIPa~dV~gA 110 (337)
T PRK08304 32 GPLGKYFDKILDDDYCGEKSWEKAERKMMEDAIQQALQKANLKKSDIDYLLAGDLLNQIISANFAARELGIPFLGLYGA 110 (337)
T ss_pred CCChhhCCeEecccccCCcCccccHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCcchHHHHHHHhCCcEEEEecc
Confidence 3566889988755444432 222 34566788888998875 78889876433 3556778877777554
No 374
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=41.33 E-value=1.2e+02 Score=21.47 Aligned_cols=41 Identities=10% Similarity=0.053 Sum_probs=31.4
Q ss_pred CcccHHHHHHHHHHcCCe-EEEEeCCCHHHHHHHHHhcCCCC
Q 025896 109 PISGLDKVKKWIEDRGLK-RAAVTNAPRENAELMISKLGLSD 149 (246)
Q Consensus 109 ~~~~~~~~l~~l~~~g~~-i~i~s~~~~~~~~~~l~~~~l~~ 149 (246)
-.||..++..+++++|+. |+++|-++.-....+.+..|...
T Consensus 57 hlPgY~~~~d~f~~kGVD~I~cVSVND~FVm~AWak~~g~~~ 98 (165)
T COG0678 57 HLPGYLELADEFKAKGVDEIYCVSVNDAFVMNAWAKSQGGEG 98 (165)
T ss_pred cCccHHHHHHHHHHcCCceEEEEEeCcHHHHHHHHHhcCCCc
Confidence 458888999999999865 66777777777777777777664
No 375
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=40.94 E-value=41 Score=24.29 Aligned_cols=30 Identities=27% Similarity=0.284 Sum_probs=24.2
Q ss_pred cccHHHHHHHHHHcCCeEEEEeCCCHHHHH
Q 025896 110 ISGLDKVKKWIEDRGLKRAAVTNAPRENAE 139 (246)
Q Consensus 110 ~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~ 139 (246)
.+.+.+.++.+|++|.+++.+|+.....+.
T Consensus 85 t~~~i~~~~~ak~~g~~ii~IT~~~~s~la 114 (179)
T TIGR03127 85 TESLVTVAKKAKEIGATVAAITTNPESTLG 114 (179)
T ss_pred cHHHHHHHHHHHHCCCeEEEEECCCCCchH
Confidence 466889999999999999999997654433
No 376
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=40.74 E-value=87 Score=21.16 Aligned_cols=36 Identities=17% Similarity=0.176 Sum_probs=26.6
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCC
Q 025896 113 LDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLS 148 (246)
Q Consensus 113 ~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~ 148 (246)
+.++.+++++.|+.++.+|..+...+...+++.++.
T Consensus 46 l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~ 81 (140)
T cd03017 46 FRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLP 81 (140)
T ss_pred HHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCC
Confidence 445556667778888888887777788888777764
No 377
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=40.69 E-value=34 Score=24.34 Aligned_cols=36 Identities=14% Similarity=0.272 Sum_probs=27.7
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCC
Q 025896 113 LDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLS 148 (246)
Q Consensus 113 ~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~ 148 (246)
+.++=+.|++.|.++.++.+.....+...++..++.
T Consensus 55 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 90 (165)
T PF00875_consen 55 LADLQESLRKLGIPLLVLRGDPEEVLPELAKEYGAT 90 (165)
T ss_dssp HHHHHHHHHHTTS-EEEEESSHHHHHHHHHHHHTES
T ss_pred HHHHHHHHHhcCcceEEEecchHHHHHHHHHhcCcC
Confidence 456667788889999999998878888888877754
No 378
>PRK09348 glyQ glycyl-tRNA synthetase subunit alpha; Validated
Probab=40.45 E-value=40 Score=26.06 Aligned_cols=39 Identities=26% Similarity=0.268 Sum_probs=32.1
Q ss_pred HHHHHHHHHcCCCC--CcEEEEecCh-hhhHHHHhcCCCEEEE
Q 025896 168 DPYFKALEMLKVSK--DHTFVFEDSV-SGIKAGVAAGLPVVGL 207 (246)
Q Consensus 168 ~~~~~~~~~~~~~~--~~~~~igD~~-~Di~~a~~~G~~~i~v 207 (246)
+.|..-++.+|++| .++-||.|.. +-.-.|...|+- +|.
T Consensus 93 elYL~SL~~lGid~~~hDIRFVEDnWEsPTLGAwGlGWE-VWl 134 (283)
T PRK09348 93 ELYLGSLEALGIDPLEHDIRFVEDNWESPTLGAWGLGWE-VWL 134 (283)
T ss_pred HHHHHHHHHhCCCccccceeEeecCCCCCcccccccceE-EEE
Confidence 56778899999987 5699999999 888899999985 444
No 379
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=40.38 E-value=40 Score=20.52 Aligned_cols=22 Identities=18% Similarity=0.164 Sum_probs=19.6
Q ss_pred cccHHHHHHHHHHcCCeEEEEe
Q 025896 110 ISGLDKVKKWIEDRGLKRAAVT 131 (246)
Q Consensus 110 ~~~~~~~l~~l~~~g~~i~i~s 131 (246)
.+.+.+.++.++++|.+++.+|
T Consensus 60 t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 60 TEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CHHHHHHHHHHHHcCCeEEEEe
Confidence 4678899999999999999888
No 380
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=40.10 E-value=43 Score=22.48 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=21.8
Q ss_pred ccHHHHHHHHHHcCCeEEEEeCCCHH
Q 025896 111 SGLDKVKKWIEDRGLKRAAVTNAPRE 136 (246)
Q Consensus 111 ~~~~~~l~~l~~~g~~i~i~s~~~~~ 136 (246)
+.+.++++.++++|.+++++|+....
T Consensus 74 ~~~~~~~~~a~~~g~~iv~iT~~~~~ 99 (139)
T cd05013 74 KETVEAAEIAKERGAKVIAITDSANS 99 (139)
T ss_pred HHHHHHHHHHHHcCCeEEEEcCCCCC
Confidence 55788899999999999999998543
No 381
>PRK06856 DNA polymerase III subunit psi; Validated
Probab=39.64 E-value=79 Score=21.67 Aligned_cols=103 Identities=13% Similarity=0.111 Sum_probs=58.4
Q ss_pred HHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEEEecChhhhHHHH
Q 025896 119 WIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEMLKVSKDHTFVFEDSVSGIKAGV 198 (246)
Q Consensus 119 ~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~igD~~~Di~~a~ 198 (246)
.|++.|+..+.+..... .... ....+.+-...++.+++... .-++ .+..+++.++++++++.++ +...+.+..
T Consensus 7 ~LqemGItqW~Lr~P~~--L~g~-~~i~lp~~~rLliV~~~~~~-~~~~-L~~dVLrsl~L~~~q~~~l--t~eq~~~L~ 79 (128)
T PRK06856 7 LLQQLGITQWVLRRPGV--LQGE-IAISLPEHIRLVIVAEELPA-LTDP-LLQDVLRSLTLSPDQVLCL--TPEQVAMLP 79 (128)
T ss_pred HHHHcCCceEEecCccc--cCCC-ccccCCccceEEEEeCCCCc-ccCh-HHHHHHHHcCCCHHHeeee--CHHHHhhCC
Confidence 46788888888876532 1111 11233444555666665431 1233 8999999999999999998 566666653
Q ss_pred hcCCCEEEEcCCCChhhhhccCCcEEecCCCC
Q 025896 199 AAGLPVVGLTTRNPEHVLLEANPTFLIKDYDD 230 (246)
Q Consensus 199 ~~G~~~i~v~~~~~~~~~~~~~~~~~i~~~~e 230 (246)
.-.-..+|..+.... ....+..+.-..++|
T Consensus 80 ~~~~~~~W~lg~~~~--~~~~~~~l~Sp~L~e 109 (128)
T PRK06856 80 QGHRCNSWLLGTDEP--LSLAGAQWQSPALTE 109 (128)
T ss_pred CCCCceEEECCCccc--ccccCCeEeCcCHHH
Confidence 333334466544322 112334444445554
No 382
>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.
Probab=39.60 E-value=71 Score=25.45 Aligned_cols=35 Identities=17% Similarity=0.214 Sum_probs=28.1
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCC
Q 025896 113 LDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLS 148 (246)
Q Consensus 113 ~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~ 148 (246)
..++++++|+.|+++.+.|-++...+...++ +|++
T Consensus 250 ~~~~v~~~~~~G~~v~vWTVNd~~~~~~l~~-~GVd 284 (300)
T cd08612 250 RPSLFRHLQKRGIQVYGWVLNDEEEFERAFE-LGAD 284 (300)
T ss_pred CHHHHHHHHHCCCEEEEeecCCHHHHHHHHh-cCCC
Confidence 3588899999999999999888777776665 5754
No 383
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=39.43 E-value=44 Score=19.99 Aligned_cols=21 Identities=19% Similarity=0.042 Sum_probs=17.1
Q ss_pred HHHHHHHcCCCCCcEEEEecC
Q 025896 170 YFKALEMLKVSKDHTFVFEDS 190 (246)
Q Consensus 170 ~~~~~~~~~~~~~~~~~igD~ 190 (246)
+...|++.|+.+.+++.|||-
T Consensus 45 v~~~L~~~G~~~GD~V~Ig~~ 65 (69)
T TIGR03595 45 VEDALRKAGAKDGDTVRIGDF 65 (69)
T ss_pred HHHHHHHcCCCCCCEEEEccE
Confidence 456777889999999999974
No 384
>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]
Probab=39.06 E-value=72 Score=23.87 Aligned_cols=48 Identities=8% Similarity=0.032 Sum_probs=32.6
Q ss_pred CCCcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEe
Q 025896 107 LKPISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVIL 156 (246)
Q Consensus 107 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~ 156 (246)
....|.+.++|+.||+. +.++++-+.+...+..-+ ...+...||-+++
T Consensus 27 ~~~~~e~~~~l~~lr~~-v~ig~VggsDl~k~~eql-G~~Vl~~fDY~F~ 74 (252)
T KOG3189|consen 27 QKVTPEMLEFLQKLRKK-VTIGFVGGSDLSKQQEQL-GDNVLEEFDYVFS 74 (252)
T ss_pred ccCCHHHHHHHHHHhhh-eEEEEeecHHHHHHHHHh-chhHHhhhccccc
Confidence 45678899999999988 889999887655544444 1134455665543
No 385
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=39.01 E-value=80 Score=26.07 Aligned_cols=43 Identities=16% Similarity=0.173 Sum_probs=30.0
Q ss_pred cCCCcccHHHHHHHHHHcCCeEEEEeCCCH--HHHHHHHHhcCCC
Q 025896 106 QLKPISGLDKVKKWIEDRGLKRAAVTNAPR--ENAELMISKLGLS 148 (246)
Q Consensus 106 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~--~~~~~~l~~~~l~ 148 (246)
+..+.+++.++++++++.|+.+.+.||+.. ...-..+...|+.
T Consensus 72 EPll~~~~~~il~~~~~~g~~~~i~TNG~ll~~~~~~~L~~~g~~ 116 (378)
T PRK05301 72 EPLLRKDLEELVAHARELGLYTNLITSGVGLTEARLAALKDAGLD 116 (378)
T ss_pred ccCCchhHHHHHHHHHHcCCcEEEECCCccCCHHHHHHHHHcCCC
Confidence 345578899999999999999999999853 1222344455543
No 386
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=38.80 E-value=2.1e+02 Score=23.04 Aligned_cols=88 Identities=22% Similarity=0.221 Sum_probs=52.4
Q ss_pred HHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEe-cCC-CCC--CCCChHHHHHHHHHcCCCCCcEEEEec
Q 025896 114 DKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVIL-GDE-CER--AKPFPDPYFKALEMLKVSKDHTFVFED 189 (246)
Q Consensus 114 ~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~-~~~-~~~--~kp~~~~~~~~~~~~~~~~~~~~~igD 189 (246)
.++++++|+.|..+.... .+.... ..+...|.+ .++. +.+ .+. ..+....+..+.+..+++ ++.-|+
T Consensus 99 ~~~i~~lk~~g~~v~~~v-~s~~~a-~~a~~~GaD----~Ivv~g~eagGh~g~~~~~~ll~~v~~~~~iP---viaaGG 169 (307)
T TIGR03151 99 GKYIPRLKENGVKVIPVV-ASVALA-KRMEKAGAD----AVIAEGMESGGHIGELTTMALVPQVVDAVSIP---VIAAGG 169 (307)
T ss_pred HHHHHHHHHcCCEEEEEc-CCHHHH-HHHHHcCCC----EEEEECcccCCCCCCCcHHHHHHHHHHHhCCC---EEEECC
Confidence 358899999988765433 333333 344455643 3332 111 111 223445566666665543 677777
Q ss_pred Ch--hhhHHHHhcCCCEEEEcCC
Q 025896 190 SV--SGIKAGVAAGLPVVGLTTR 210 (246)
Q Consensus 190 ~~--~Di~~a~~~G~~~i~v~~~ 210 (246)
-. .|+..+..+|...+++.+.
T Consensus 170 I~~~~~~~~al~~GA~gV~iGt~ 192 (307)
T TIGR03151 170 IADGRGMAAAFALGAEAVQMGTR 192 (307)
T ss_pred CCCHHHHHHHHHcCCCEeecchH
Confidence 65 6788888899988888654
No 387
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=38.68 E-value=2.3e+02 Score=23.52 Aligned_cols=110 Identities=9% Similarity=0.038 Sum_probs=60.8
Q ss_pred ccHHHHHHHHHHcCCeEEEEeCCCHHH--HHHHHHhcCCCCcceEEEecC-CCCCCCCChHHHHHHHHHcCCCCCcEEEE
Q 025896 111 SGLDKVKKWIEDRGLKRAAVTNAPREN--AELMISKLGLSDFFQVVILGD-ECERAKPFPDPYFKALEMLKVSKDHTFVF 187 (246)
Q Consensus 111 ~~~~~~l~~l~~~g~~i~i~s~~~~~~--~~~~l~~~~l~~~f~~~~~~~-~~~~~kp~~~~~~~~~~~~~~~~~~~~~i 187 (246)
.+...+++.+++.++..+++.....-. +...++..|+. ++... ....-.-+....+.+++++|++--....+
T Consensus 14 ~d~~~l~~~~~~~~id~vi~g~E~~l~~~~~d~l~~~Gi~-----~~g~s~~a~~l~~dK~~~k~~l~~~gIptp~~~~~ 88 (379)
T PRK13790 14 SDHQAILDFAKQQNVDWVVIGPEQPLIDGLADILRANGFK-----VFGPNKQAAQIEGSKLFAKKIMEKYNIPTADYKEV 88 (379)
T ss_pred CCHHHHHHHHHHhCCCEEEECCcHHHHHHHHHHHHhCCCc-----EECCCHHHHHHhCCHHHHHHHHHHCCCCCCCEEEE
Confidence 345667777888878777765543211 23344445543 11111 11011113345668899999977666666
Q ss_pred ecChhhhHHHHhcCCCEEEEcCCCChhhhhccCCcEEecCCCC
Q 025896 188 EDSVSGIKAGVAAGLPVVGLTTRNPEHVLLEANPTFLIKDYDD 230 (246)
Q Consensus 188 gD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i~~~~e 230 (246)
.|...-.+.+...|.+.+.-..+.. ......++++..|
T Consensus 89 ~~~~ea~~~~~~~g~PvVvKp~~~~-----~gkGV~iv~~~~e 126 (379)
T PRK13790 89 ERKKDALTYIENCELPVVVKKDGLA-----AGKGVIIADTIEA 126 (379)
T ss_pred CCHHHHHHHHHhcCCCEEEEeCCCC-----CCCCEEEECCHHH
Confidence 5544444556678888776654321 1233466777666
No 388
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=38.56 E-value=28 Score=21.52 Aligned_cols=16 Identities=31% Similarity=0.574 Sum_probs=13.3
Q ss_pred ceEEEeCCCccccChh
Q 025896 23 EAVLFDVDGTLCDSDP 38 (246)
Q Consensus 23 k~iifD~DGTL~~~~~ 38 (246)
-.|+++-|||.++++.
T Consensus 40 ~~lvL~eDGT~Vd~Ee 55 (79)
T cd06538 40 SSLVLDEDGTGVDTEE 55 (79)
T ss_pred cEEEEecCCcEEccHH
Confidence 4589999999998764
No 389
>COG1436 NtpG Archaeal/vacuolar-type H+-ATPase subunit F [Energy production and conversion]
Probab=38.55 E-value=1.1e+02 Score=20.03 Aligned_cols=45 Identities=11% Similarity=0.116 Sum_probs=35.2
Q ss_pred cHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEe
Q 025896 112 GLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVIL 156 (246)
Q Consensus 112 ~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~ 156 (246)
.+.++++.|.+.++.+.++|......++..+++..-...+..++.
T Consensus 34 ~~~~~~~~l~~~~~~iIiite~~a~~i~~~i~~~~~~~~~P~iv~ 78 (104)
T COG1436 34 ELRAALRVLAEDDVGIILITEDLAEKIREEIRRIIRSSVLPAIVE 78 (104)
T ss_pred HHHHHHHhhccCCceEEEEeHHHHhhhHHHHHHHhhccCccEEEE
Confidence 478899999999999999999988888888887644444444443
No 390
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=38.47 E-value=1.4e+02 Score=20.85 Aligned_cols=24 Identities=17% Similarity=0.047 Sum_probs=12.2
Q ss_pred HHHHHHHHHcCC--CCCcEEEEecCh
Q 025896 168 DPYFKALEMLKV--SKDHTFVFEDSV 191 (246)
Q Consensus 168 ~~~~~~~~~~~~--~~~~~~~igD~~ 191 (246)
.....+++++++ .-.+++++|-+.
T Consensus 13 ~a~~~ll~~~~~~~~gk~v~VvGrs~ 38 (140)
T cd05212 13 KAVKELLNKEGVRLDGKKVLVVGRSG 38 (140)
T ss_pred HHHHHHHHHcCCCCCCCEEEEECCCc
Confidence 444455555543 234555555555
No 391
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=38.32 E-value=42 Score=24.20 Aligned_cols=26 Identities=23% Similarity=0.256 Sum_probs=22.8
Q ss_pred cccHHHHHHHHHHcCCeEEEEeCCCH
Q 025896 110 ISGLDKVKKWIEDRGLKRAAVTNAPR 135 (246)
Q Consensus 110 ~~~~~~~l~~l~~~g~~i~i~s~~~~ 135 (246)
.+.+.+.++.++++|.+++.+|+...
T Consensus 114 t~~~i~~~~~ak~~Ga~vI~IT~~~~ 139 (177)
T cd05006 114 SPNVLKALEAAKERGMKTIALTGRDG 139 (177)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 47789999999999999999998743
No 392
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=38.32 E-value=2.5e+02 Score=23.83 Aligned_cols=117 Identities=14% Similarity=0.090 Sum_probs=63.6
Q ss_pred ccHHHHHHHHHHcCCeEEEEeCCCHH--HHHHHHHhcCCCCcceEEEecCC-CCCCCCChHHHHHHHHHcCCCCCcEEEE
Q 025896 111 SGLDKVKKWIEDRGLKRAAVTNAPRE--NAELMISKLGLSDFFQVVILGDE-CERAKPFPDPYFKALEMLKVSKDHTFVF 187 (246)
Q Consensus 111 ~~~~~~l~~l~~~g~~i~i~s~~~~~--~~~~~l~~~~l~~~f~~~~~~~~-~~~~kp~~~~~~~~~~~~~~~~~~~~~i 187 (246)
.+..++++.+++.++.++++...... .+-..++.+|+. +| .... .....-+....+.+++++|++.-+...+
T Consensus 55 ~d~~~l~~~a~~~~iD~Vv~g~E~~l~~glad~~~~~Gip-~~----Gp~~~aa~le~dK~~~K~~l~~~gIpt~~~~~~ 129 (426)
T PRK13789 55 LDKSSVQSFLKSNPFDLIVVGPEDPLVAGFADWAAELGIP-CF----GPDSYCAQVEGSKHFAKSLMKEAKIPTASYKTF 129 (426)
T ss_pred CCHHHHHHHHHHcCCCEEEECCchHHHHHHHHHHHHcCCC-cC----CCHHHHHHHHcCHHHHHHHHHHcCCCCCCeEee
Confidence 34556677778877777776433322 233455667764 11 0100 0001113345677889999976666666
Q ss_pred ecChhhhHHHHhcCCCEEEEcCCCChhhhhccCCcEEecCCCChhhHHHHhh
Q 025896 188 EDSVSGIKAGVAAGLPVVGLTTRNPEHVLLEANPTFLIKDYDDPKLWSALEE 239 (246)
Q Consensus 188 gD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i~~~~el~~~~~l~~ 239 (246)
.|...-...++..|.+++.-..+. ......+++.+..| +...++.
T Consensus 130 ~~~~ea~~~~~~~~~PvVVKp~~~-----~~gkGV~vv~~~ee--l~~a~~~ 174 (426)
T PRK13789 130 TEYSSSLSYLESEMLPIVIKADGL-----AAGKGVTVATEKKM--AKRALKE 174 (426)
T ss_pred CCHHHHHHHHHhcCCCEEEEeCCC-----CCCCcEEEECCHHH--HHHHHHH
Confidence 443333345667788877665442 12234567777766 4444443
No 393
>KOG0622 consensus Ornithine decarboxylase [Amino acid transport and metabolism]
Probab=38.24 E-value=1.5e+02 Score=25.03 Aligned_cols=70 Identities=20% Similarity=0.217 Sum_probs=45.8
Q ss_pred EEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEEEecCh--hhhHHHHhcCCCE
Q 025896 127 RAAVTNAPRENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEMLKVSKDHTFVFEDSV--SGIKAGVAAGLPV 204 (246)
Q Consensus 127 i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~igD~~--~Di~~a~~~G~~~ 204 (246)
.+.|--++...+-+.|..+|.- |+- .+|. =..+...+|++|++++|.+-.. .+|.-|...|+..
T Consensus 83 fYAVKCN~dp~vl~~La~lG~g--fdc--------aSk~----E~~lvl~~gv~P~riIyanpcK~~s~IkyAa~~gV~~ 148 (448)
T KOG0622|consen 83 FYAVKCNSDPKVLRLLASLGCG--FDC--------ASKN----ELDLVLSLGVSPERIIYANPCKQVSQIKYAAKHGVSV 148 (448)
T ss_pred ceeEEeCCCHHHHHHHHHcCcc--cee--------cChH----HHHHHHhcCCChHHeEecCCCccHHHHHHHHHcCCeE
Confidence 3344334445566667777643 331 1222 1456677899999999998776 7999999999887
Q ss_pred EEEcCC
Q 025896 205 VGLTTR 210 (246)
Q Consensus 205 i~v~~~ 210 (246)
.-+...
T Consensus 149 ~tfDne 154 (448)
T KOG0622|consen 149 MTFDNE 154 (448)
T ss_pred EeecCH
Confidence 777554
No 394
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=38.11 E-value=93 Score=25.43 Aligned_cols=28 Identities=14% Similarity=0.054 Sum_probs=24.2
Q ss_pred CCCcccHHHHHHHHHHcCCeEEEEeCCC
Q 025896 107 LKPISGLDKVKKWIEDRGLKRAAVTNAP 134 (246)
Q Consensus 107 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~ 134 (246)
..+.|++.++++.+++.|+.+.+.||+.
T Consensus 64 Pll~~~~~~ii~~~~~~g~~~~l~TNG~ 91 (358)
T TIGR02109 64 PLARPDLVELVAHARRLGLYTNLITSGV 91 (358)
T ss_pred ccccccHHHHHHHHHHcCCeEEEEeCCc
Confidence 4457889999999999999999999985
No 395
>TIGR00388 glyQ glycyl-tRNA synthetase, tetrameric type, alpha subunit. This tetrameric form of glycyl-tRNA synthetase (2 alpha, 2 beta) is found in the majority of completed eubacterial genomes, with the two genes fused in a few species. A substantially different homodimeric form (not recognized by this model) replaces this form in the Archaea, animals, yeasts, and some eubacteria.
Probab=38.07 E-value=47 Score=25.84 Aligned_cols=39 Identities=21% Similarity=0.244 Sum_probs=32.1
Q ss_pred HHHHHHHHHcCCCC--CcEEEEecCh-hhhHHHHhcCCCEEEE
Q 025896 168 DPYFKALEMLKVSK--DHTFVFEDSV-SGIKAGVAAGLPVVGL 207 (246)
Q Consensus 168 ~~~~~~~~~~~~~~--~~~~~igD~~-~Di~~a~~~G~~~i~v 207 (246)
+.|..-++.+|++| .++-||.|.. +-.-.|...|+- ||.
T Consensus 90 elYL~SL~~lGid~~~hDIRFVEDnWEsPTLGAwGlGWE-VWl 131 (293)
T TIGR00388 90 ELYLDSLRALGIDPTEHDIRFVEDNWENPTLGAWGLGWE-VWL 131 (293)
T ss_pred HHHHHHHHHhCCCccccCeeEeecCCCCCcccccccccE-EEE
Confidence 56777889999987 5699999999 888899999985 444
No 396
>PRK08185 hypothetical protein; Provisional
Probab=38.00 E-value=2.1e+02 Score=22.81 Aligned_cols=95 Identities=8% Similarity=0.042 Sum_probs=57.6
Q ss_pred HHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCC---CCCCCChHHHHHHHHHcCCCCCcEEEEec-
Q 025896 114 DKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDEC---ERAKPFPDPYFKALEMLKVSKDHTFVFED- 189 (246)
Q Consensus 114 ~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~---~~~kp~~~~~~~~~~~~~~~~~~~~~igD- 189 (246)
.++|...++.||-+....-.+.+.++.+++...-.. -..++..... ..+.+-......+.++..++ =+++.+-
T Consensus 2 ~~~L~~A~~~~yaV~AfN~~n~e~~~avi~AAee~~-sPvIl~~~~~~~~~~~~~~~~~~~~~a~~~~vP--V~lHLDHg 78 (283)
T PRK08185 2 KELLKVAKEHQFAVGAFNVADSCFLRAVVEEAEANN-APAIIAIHPNELDFLGDNFFAYVRERAKRSPVP--FVIHLDHG 78 (283)
T ss_pred HHHHHHHHHcCceEEEEEeCCHHHHHHHHHHHHHhC-CCEEEEeCcchhhhccHHHHHHHHHHHHHCCCC--EEEECCCC
Confidence 467888888889888888888888887776542110 1111111111 01122233455566666664 2455543
Q ss_pred -ChhhhHHHHhcCCCEEEEcCCC
Q 025896 190 -SVSGIKAGVAAGLPVVGLTTRN 211 (246)
Q Consensus 190 -~~~Di~~a~~~G~~~i~v~~~~ 211 (246)
++.++..|-.+|+.+++++...
T Consensus 79 ~~~e~i~~ai~~Gf~SVM~D~S~ 101 (283)
T PRK08185 79 ATIEDVMRAIRCGFTSVMIDGSL 101 (283)
T ss_pred CCHHHHHHHHHcCCCEEEEeCCC
Confidence 3468888888999999998764
No 397
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=37.75 E-value=25 Score=21.70 Aligned_cols=17 Identities=24% Similarity=0.393 Sum_probs=13.5
Q ss_pred cceEEEeCCCccccChh
Q 025896 22 LEAVLFDVDGTLCDSDP 38 (246)
Q Consensus 22 ~k~iifD~DGTL~~~~~ 38 (246)
.-.++++=|||.++.+.
T Consensus 40 ~~~lvL~eDGT~VddEe 56 (78)
T PF02017_consen 40 PVRLVLEEDGTEVDDEE 56 (78)
T ss_dssp TCEEEETTTTCBESSCH
T ss_pred CcEEEEeCCCcEEccHH
Confidence 34578899999999774
No 398
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=37.59 E-value=2.3e+02 Score=24.65 Aligned_cols=29 Identities=14% Similarity=0.155 Sum_probs=23.5
Q ss_pred CCcEEEEecChhhhHHHHh---cCCCEEEEcC
Q 025896 181 KDHTFVFEDSVSGIKAGVA---AGLPVVGLTT 209 (246)
Q Consensus 181 ~~~~~~igD~~~Di~~a~~---~G~~~i~v~~ 209 (246)
.-+++.||-++..+.+|.. .|++++.+..
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~ 242 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAE 242 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEec
Confidence 3479999999999988876 4888888754
No 399
>PF08620 RPAP1_C: RPAP1-like, C-terminal; InterPro: IPR013929 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the C-terminal region that contains the motif GLHHH. This region is conserved from yeast to humans.
Probab=37.20 E-value=14 Score=22.52 Aligned_cols=10 Identities=50% Similarity=0.856 Sum_probs=8.6
Q ss_pred EEEeCCCccc
Q 025896 25 VLFDVDGTLC 34 (246)
Q Consensus 25 iifD~DGTL~ 34 (246)
+=|||+|.++
T Consensus 3 ~RFdf~G~l~ 12 (73)
T PF08620_consen 3 LRFDFDGNLL 12 (73)
T ss_pred ccccCCCCEe
Confidence 3499999999
No 400
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=36.75 E-value=2e+02 Score=22.17 Aligned_cols=94 Identities=15% Similarity=0.069 Sum_probs=51.7
Q ss_pred ccHHHHHHHHHHcCCeEEEEeCC--CHHHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEEEe
Q 025896 111 SGLDKVKKWIEDRGLKRAAVTNA--PRENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEMLKVSKDHTFVFE 188 (246)
Q Consensus 111 ~~~~~~l~~l~~~g~~i~i~s~~--~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~ig 188 (246)
+...++++.+++.|.+.+++-+. +.+.++..++...- |= +++.......+-.+.....+-+--...++..+.+|
T Consensus 116 ~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~---~l-~msv~~~~g~~~~~~~~~~i~~lr~~~~~~~i~v~ 191 (244)
T PRK13125 116 DDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPL---FI-YYGLRPATGVPLPVSVERNIKRVRNLVGNKYLVVG 191 (244)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCC---EE-EEEeCCCCCCCchHHHHHHHHHHHHhcCCCCEEEe
Confidence 56778999999999998887665 33455666654321 11 11222111112122222222211122223346777
Q ss_pred cCh---hhhHHHHhcCCCEEEEc
Q 025896 189 DSV---SGIKAGVAAGLPVVGLT 208 (246)
Q Consensus 189 D~~---~Di~~a~~~G~~~i~v~ 208 (246)
=+. .++..+..+|...+.+.
T Consensus 192 gGI~~~e~i~~~~~~gaD~vvvG 214 (244)
T PRK13125 192 FGLDSPEDARDALSAGADGVVVG 214 (244)
T ss_pred CCcCCHHHHHHHHHcCCCEEEEC
Confidence 655 68888888999888884
No 401
>PLN02591 tryptophan synthase
Probab=36.62 E-value=2e+02 Score=22.33 Aligned_cols=99 Identities=13% Similarity=0.095 Sum_probs=53.2
Q ss_pred CcccHHHHHHHHHHcCCeEEEEe-CCC-HHHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEE
Q 025896 109 PISGLDKVKKWIEDRGLKRAAVT-NAP-RENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEMLKVSKDHTFV 186 (246)
Q Consensus 109 ~~~~~~~~l~~l~~~g~~i~i~s-~~~-~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~ 186 (246)
++++..++.+.++++|+..+.+- -.. ...++.+.+.. ..+.-.+-.....+.....+..+...+++..--..--++
T Consensus 116 P~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~--~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~Pv~ 193 (250)
T PLN02591 116 PLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEAS--EGFVYLVSSTGVTGARASVSGRVESLLQELKEVTDKPVA 193 (250)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhC--CCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhcCCCceE
Confidence 45678899999999997766544 433 34455555543 122222111222232222233344433333221233445
Q ss_pred EecCh---hhhHHHHhcCCCEEEEcC
Q 025896 187 FEDSV---SGIKAGVAAGLPVVGLTT 209 (246)
Q Consensus 187 igD~~---~Di~~a~~~G~~~i~v~~ 209 (246)
+|=+. .|+..+...|...+.|.+
T Consensus 194 vGFGI~~~e~v~~~~~~GADGvIVGS 219 (250)
T PLN02591 194 VGFGISKPEHAKQIAGWGADGVIVGS 219 (250)
T ss_pred EeCCCCCHHHHHHHHhcCCCEEEECH
Confidence 55544 588888889888888843
No 402
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=36.61 E-value=1.6e+02 Score=21.17 Aligned_cols=27 Identities=15% Similarity=0.166 Sum_probs=18.5
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCHHHHHH
Q 025896 113 LDKVKKWIEDRGLKRAAVTNAPRENAEL 140 (246)
Q Consensus 113 ~~~~l~~l~~~g~~i~i~s~~~~~~~~~ 140 (246)
+.++++.+.+++.+++++-+. ......
T Consensus 35 ~~~ll~~~~~~~~~v~llG~~-~~~~~~ 61 (171)
T cd06533 35 MPALLELAAQKGLRVFLLGAK-PEVLEK 61 (171)
T ss_pred HHHHHHHHHHcCCeEEEECCC-HHHHHH
Confidence 467788888888899888544 344443
No 403
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=36.43 E-value=68 Score=22.94 Aligned_cols=46 Identities=17% Similarity=0.329 Sum_probs=25.6
Q ss_pred ccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCC-CcceEEEecC
Q 025896 111 SGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLS-DFFQVVILGD 158 (246)
Q Consensus 111 ~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~-~~f~~~~~~~ 158 (246)
..+.++|+.++..|.+|++.-.+.... -.+..+|+. .+++.++..+
T Consensus 55 ~~l~~~L~~~~~~gk~I~~yGA~~kg~--tlln~~g~~~~~I~~vvD~n 101 (160)
T PF08484_consen 55 AELREFLEKLKAEGKRIAGYGAGAKGN--TLLNYFGLDNDLIDYVVDDN 101 (160)
T ss_dssp HHHHHHHHHHHHTT--EEEE---SHHH--HHHHHHT--TTTS--EEES-
T ss_pred HHHHHHHHHHHHcCCEEEEECcchHHH--HHHHHhCCCcceeEEEEeCC
Confidence 346689999999999999998776544 346667774 5567666543
No 404
>PRK13937 phosphoheptose isomerase; Provisional
Probab=36.32 E-value=53 Score=24.06 Aligned_cols=27 Identities=11% Similarity=0.075 Sum_probs=22.9
Q ss_pred cccHHHHHHHHHHcCCeEEEEeCCCHH
Q 025896 110 ISGLDKVKKWIEDRGLKRAAVTNAPRE 136 (246)
Q Consensus 110 ~~~~~~~l~~l~~~g~~i~i~s~~~~~ 136 (246)
.+.+.+.++.++++|.+++.+|+....
T Consensus 119 t~~~~~~~~~ak~~g~~~I~iT~~~~s 145 (188)
T PRK13937 119 SPNVLAALEKARELGMKTIGLTGRDGG 145 (188)
T ss_pred cHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 477889999999999999999987543
No 405
>PF12990 DUF3874: Domain of unknonw function from B. Theta Gene description (DUF3874); InterPro: IPR024450 This domain of unknown function if found in uncharacterised proteins from Bacteroides thetaiotaomicron and other Bacteroidetes.
Probab=36.30 E-value=96 Score=18.88 Aligned_cols=34 Identities=12% Similarity=0.261 Sum_probs=27.4
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCC
Q 025896 113 LDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLS 148 (246)
Q Consensus 113 ~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~ 148 (246)
+.++++.|++. .+.. +++........+|..+|+.
T Consensus 28 a~~If~~L~k~-~~~~-l~~~~~~~FGriL~~~gi~ 61 (73)
T PF12990_consen 28 AAEIFERLQKK-SPAA-LRGSNPNHFGRILQKLGIP 61 (73)
T ss_pred HHHHHHHHHHh-Cccc-cccCCHHHHHHHHHHcCCC
Confidence 67889999887 4554 7788888899999999875
No 406
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=36.05 E-value=68 Score=29.96 Aligned_cols=38 Identities=16% Similarity=0.065 Sum_probs=32.1
Q ss_pred CCcccHHHHHHHH-HHcCCeEEEEeCCCHHHHHHHHHhc
Q 025896 108 KPISGLDKVKKWI-EDRGLKRAAVTNAPRENAELMISKL 145 (246)
Q Consensus 108 ~~~~~~~~~l~~l-~~~g~~i~i~s~~~~~~~~~~l~~~ 145 (246)
.+.+++.++|++| ++.|..++|+|+.+...++..+...
T Consensus 616 ~p~~~~~~~L~~L~~d~g~~VaIvSGR~~~~L~~~f~~~ 654 (854)
T PLN02205 616 SPSSKSIDILNTLCRDKNNMVFIVSARSRKTLADWFSPC 654 (854)
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEeCCCHHHHHHHhCCC
Confidence 4567899999997 6678999999999999999888653
No 407
>PF06901 FrpC: RTX iron-regulated protein FrpC; InterPro: IPR010692 This family consists of several RTX iron-regulated FrpC proteins which appear to be found exclusively in Neisseria meningitidis. FrpC has been shown to be related to the RTX family of bacterial cytotoxins. FrpC is found in the meningococcal outer membrane. The function of this family is unknown although it is thought to be a virulence factor [].
Probab=36.05 E-value=20 Score=26.23 Aligned_cols=15 Identities=33% Similarity=0.321 Sum_probs=12.6
Q ss_pred cceEEEeCCCccccC
Q 025896 22 LEAVLFDVDGTLCDS 36 (246)
Q Consensus 22 ~k~iifD~DGTL~~~ 36 (246)
-+.|-||+|||++--
T Consensus 58 E~~v~~D~~GT~m~i 72 (271)
T PF06901_consen 58 EHTVTFDFQGTKMVI 72 (271)
T ss_pred eeeEEEeccceEEEe
Confidence 467999999999863
No 408
>PF12261 T_hemolysin: Thermostable hemolysin; InterPro: IPR022050 This family of proteins is found in bacteria. Proteins in this family are typically between 200 and 228 amino acids in length. T_hemolysin is a pore-forming toxin of bacteria, able to lyse erythrocytes from a number of mammalian species.
Probab=36.01 E-value=1.1e+02 Score=22.35 Aligned_cols=33 Identities=15% Similarity=0.367 Sum_probs=27.4
Q ss_pred HHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCC
Q 025896 115 KVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSD 149 (246)
Q Consensus 115 ~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~ 149 (246)
.+...|...|++.++.|.. ...+..+.++|+..
T Consensus 107 ~l~~~L~~~g~~w~vfTaT--~~lr~~~~rlgl~~ 139 (179)
T PF12261_consen 107 ALAQLLAQQGFEWVVFTAT--RQLRNLFRRLGLPP 139 (179)
T ss_pred HHHHHHHHCCCCEEEEeCC--HHHHHHHHHcCCCc
Confidence 3446678999999999999 67889999999873
No 409
>PF03020 LEM: LEM domain; InterPro: IPR003887 The LEM domain is found in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin []. Defects in the emerin gene are a cause of Emery-Dreifuss muscular dystrophy, an X-linked disorder characterised by early contractures, muscle wasting, weakness and cardiomyopathy.; GO: 0005635 nuclear envelope; PDB: 2ODG_C 2ODC_I 1JEI_A 1H9F_A 1GJJ_A.
Probab=35.99 E-value=4.3 Score=21.79 Aligned_cols=31 Identities=19% Similarity=0.302 Sum_probs=18.3
Q ss_pred HHHHHHHHcCCeEEEEeCCCHHHHHHHHHhc
Q 025896 115 KVKKWIEDRGLKRAAVTNAPRENAELMISKL 145 (246)
Q Consensus 115 ~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~ 145 (246)
++.++|++.|+..+-+|...+......|.++
T Consensus 10 ELr~~L~~~G~~~GPIt~tTR~vY~kkL~kl 40 (43)
T PF03020_consen 10 ELREELREYGEPPGPITPTTRKVYEKKLAKL 40 (43)
T ss_dssp CCHHCCCCCT-S-----CCCHHHHHHHCHHH
T ss_pred HHHHHHHHcCCCCCCCCcccHHHHHHHHHHH
Confidence 4566778889999999988888777776653
No 410
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=35.89 E-value=3.4e+02 Score=26.31 Aligned_cols=58 Identities=7% Similarity=0.091 Sum_probs=36.9
Q ss_pred HHHHHHHHHcCCCCCcEEEEecChhhhHHHHhcCCCEEEEcCCCChhhhhccCCcEEecCCCC
Q 025896 168 DPYFKALEMLKVSKDHTFVFEDSVSGIKAGVAAGLPVVGLTTRNPEHVLLEANPTFLIKDYDD 230 (246)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i~~~~e 230 (246)
..++..++++|++--....+.+...-...+...|.+++.-..... ......++++..|
T Consensus 130 ~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~ig~PvVVKP~~g~-----gg~Gv~iv~~~ee 187 (1066)
T PRK05294 130 ELFKEAMKKIGLPVPRSGIAHSMEEALEVAEEIGYPVIIRPSFTL-----GGTGGGIAYNEEE 187 (1066)
T ss_pred HHHHHHHHHCCcCCCCeeeeCCHHHHHHHHHHcCCCeEEEcCCCC-----CCCCeEEECCHHH
Confidence 346678888999877777775433333566778998877754321 1233467777776
No 411
>COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism]
Probab=35.77 E-value=2.2e+02 Score=23.52 Aligned_cols=23 Identities=13% Similarity=0.122 Sum_probs=19.3
Q ss_pred cHHHHHHHHHHcCCeEEEEeCCC
Q 025896 112 GLDKVKKWIEDRGLKRAAVTNAP 134 (246)
Q Consensus 112 ~~~~~l~~l~~~g~~i~i~s~~~ 134 (246)
...+.+..|++.|+++++||++-
T Consensus 32 ~l~~~ia~L~~~G~eVilVSSGA 54 (369)
T COG0263 32 ELVRQVAALHKAGHEVVLVSSGA 54 (369)
T ss_pred HHHHHHHHHHhCCCEEEEEccch
Confidence 35577888999999999999883
No 412
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=35.71 E-value=2.9e+02 Score=26.69 Aligned_cols=120 Identities=15% Similarity=0.137 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCeEEEEeCCC-------------------HHHHHHHHHhcCCCCcce----------------------
Q 025896 114 DKVKKWIEDRGLKRAAVTNAP-------------------RENAELMISKLGLSDFFQ---------------------- 152 (246)
Q Consensus 114 ~~~l~~l~~~g~~i~i~s~~~-------------------~~~~~~~l~~~~l~~~f~---------------------- 152 (246)
..+++.|++.|++++++.+++ ...+..++++.+++..+.
T Consensus 30 ~q~~kalke~G~~vi~v~~np~~~~~~~~~aD~~y~~p~~~~~v~~ii~~e~~DaIlp~~gg~~~l~la~~l~~~~~le~ 109 (1050)
T TIGR01369 30 SQACKALKEEGYRVILVNSNPATIMTDPEMADKVYIEPLTPEAVEKIIEKERPDAILPTFGGQTALNLAVELEESGVLEK 109 (1050)
T ss_pred HHHHHHHHHcCCEEEEEecchhhccCChhcCCEEEECCCCHHHHHHHHHHhCCCEEEECCCChhHHHHHhhHHHHhHHHH
Q ss_pred ----EEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEEEecChhhhHHHHhcCCCEEEEcCCCChhhhhccCCcEEecCC
Q 025896 153 ----VVILGDECERAKPFPDPYFKALEMLKVSKDHTFVFEDSVSGIKAGVAAGLPVVGLTTRNPEHVLLEANPTFLIKDY 228 (246)
Q Consensus 153 ----~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i~~~ 228 (246)
.+-.+...-...-+...++..+++.|++.-....+.+...-...++..|.+++.- +..........++++-
T Consensus 110 ~Gv~~~G~~~~ai~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~igyPvIVK-----P~~g~gg~Gv~iv~~~ 184 (1050)
T TIGR01369 110 YGVEVLGTPVEAIKKAEDRELFREAMKEIGEPVPESEIAHSVEEALAAAKEIGYPVIVR-----PAFTLGGTGGGIAYNR 184 (1050)
T ss_pred CCCEEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHhCCCeEEE-----CCCCCCCCCeEEECCH
Q ss_pred CChhhHHHHhhh
Q 025896 229 DDPKLWSALEEL 240 (246)
Q Consensus 229 ~el~~~~~l~~~ 240 (246)
.| +...+...
T Consensus 185 ee--L~~~~~~~ 194 (1050)
T TIGR01369 185 EE--LKEIAERA 194 (1050)
T ss_pred HH--HHHHHHHH
No 413
>COG2044 Predicted peroxiredoxins [General function prediction only]
Probab=35.33 E-value=67 Score=21.72 Aligned_cols=27 Identities=15% Similarity=0.149 Sum_probs=23.6
Q ss_pred CCCcccHHHHHHHHHHcCCeEEEEeCC
Q 025896 107 LKPISGLDKVKKWIEDRGLKRAAVTNA 133 (246)
Q Consensus 107 ~~~~~~~~~~l~~l~~~g~~i~i~s~~ 133 (246)
...+|-..+++++++++|++++++.-+
T Consensus 58 ~~~~~~l~~~~~~a~e~GVk~yvCe~s 84 (120)
T COG2044 58 HPNFPPLEELIKQAIEAGVKIYVCEQS 84 (120)
T ss_pred CCCCCCHHHHHHHHHHcCCEEEEEcch
Confidence 356688999999999999999999776
No 414
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=35.20 E-value=86 Score=24.17 Aligned_cols=42 Identities=12% Similarity=0.045 Sum_probs=28.2
Q ss_pred HHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEec
Q 025896 115 KVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILG 157 (246)
Q Consensus 115 ~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~ 157 (246)
++++...+.++.++++|+.+...+...+...++. ..|.++++
T Consensus 26 ~~l~~~~~~~~~~v~~TGRs~~~~~~~~~~~~l~-~Pd~~I~s 67 (247)
T PF05116_consen 26 ELLEQQARPEILFVYVTGRSLESVLRLLREYNLP-QPDYIITS 67 (247)
T ss_dssp HHHHHHHCCGEEEEEE-SS-HHHHHHHHHHCT-E-E-SEEEET
T ss_pred HHHHHhhCCCceEEEECCCCHHHHHHHHHhCCCC-CCCEEEec
Confidence 3444344566889999999999999999988874 35666665
No 415
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=35.05 E-value=56 Score=23.61 Aligned_cols=27 Identities=19% Similarity=0.232 Sum_probs=22.9
Q ss_pred cccHHHHHHHHHHcCCeEEEEeCCCHH
Q 025896 110 ISGLDKVKKWIEDRGLKRAAVTNAPRE 136 (246)
Q Consensus 110 ~~~~~~~l~~l~~~g~~i~i~s~~~~~ 136 (246)
.+.+.++++.++++|.+++.+|+....
T Consensus 88 t~~~i~~~~~ak~~g~~iI~IT~~~~s 114 (179)
T cd05005 88 TSSVVNAAEKAKKAGAKVVLITSNPDS 114 (179)
T ss_pred cHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 466889999999999999999997544
No 416
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=34.91 E-value=2.5e+02 Score=22.86 Aligned_cols=56 Identities=18% Similarity=0.177 Sum_probs=33.7
Q ss_pred HHHHHHHcCCCCCcEEEEecChhhh-HHHHhcCCCEEEEcCCCChhhhhccCCcEEecCCCC
Q 025896 170 YFKALEMLKVSKDHTFVFEDSVSGI-KAGVAAGLPVVGLTTRNPEHVLLEANPTFLIKDYDD 230 (246)
Q Consensus 170 ~~~~~~~~~~~~~~~~~igD~~~Di-~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i~~~~e 230 (246)
.+..+++.|++--....+. +..++ ..+...|.+++.-...... .....+++++.+|
T Consensus 102 ~k~~l~~~gip~p~~~~~~-~~~~~~~~~~~~g~P~vvKp~~~g~----~g~Gv~~v~~~~e 158 (352)
T TIGR01161 102 QKQFLQKLGLPVPPFLVIK-DEEELDAALQELGFPVVLKARTGGY----DGRGQYRIRNEAD 158 (352)
T ss_pred HHHHHHHcCCCCCCccEeC-CHHHHHHHHHHcCCCEEEEeCCCCC----CCCCEEEECCHHH
Confidence 4566788899776666665 45555 4456779887776543210 1223456666666
No 417
>KOG1154 consensus Gamma-glutamyl kinase [Amino acid transport and metabolism]
Probab=34.64 E-value=82 Score=24.26 Aligned_cols=32 Identities=6% Similarity=0.013 Sum_probs=25.0
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHh
Q 025896 113 LDKVKKWIEDRGLKRAAVTNAPRENAELMISK 144 (246)
Q Consensus 113 ~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~ 144 (246)
+.+.+.+|+..|..+.++|++...+-+..|+.
T Consensus 37 IVEqV~~L~~~G~evilVSSGaVA~G~qrLr~ 68 (285)
T KOG1154|consen 37 IVEQVSELQRMGREVILVSSGAVAFGRQRLRQ 68 (285)
T ss_pred HHHHHHHHHhcCceEEEEecchhhhhHHHhhh
Confidence 56778899999999999999976665555543
No 418
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=34.54 E-value=2.8e+02 Score=24.13 Aligned_cols=30 Identities=17% Similarity=0.238 Sum_probs=23.9
Q ss_pred CCCCcEEEEecChhhhHHHHh---cCCCEEEEc
Q 025896 179 VSKDHTFVFEDSVSGIKAGVA---AGLPVVGLT 208 (246)
Q Consensus 179 ~~~~~~~~igD~~~Di~~a~~---~G~~~i~v~ 208 (246)
..+-+++.||-++..+.+|.. .|.++..+.
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~ 242 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVA 242 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEe
Confidence 345689999999999988776 488887774
No 419
>COG1015 DeoB Phosphopentomutase [Carbohydrate transport and metabolism]
Probab=34.37 E-value=2.7e+02 Score=23.14 Aligned_cols=84 Identities=13% Similarity=0.152 Sum_probs=49.7
Q ss_pred cccHHHHHHHHHHcCCeEEEE-----------------eCCCHHHHHHHHHhcCCCC----cceEEEecCCCCCCCCChH
Q 025896 110 ISGLDKVKKWIEDRGLKRAAV-----------------TNAPRENAELMISKLGLSD----FFQVVILGDECERAKPFPD 168 (246)
Q Consensus 110 ~~~~~~~l~~l~~~g~~i~i~-----------------s~~~~~~~~~~l~~~~l~~----~f~~~~~~~~~~~~kp~~~ 168 (246)
-|-...+|+.|++.|.+++.+ +.++...+...++.+.-.. .|-.++--+...-.+-++.
T Consensus 223 ~P~~~tvl~~L~e~g~~vi~IGKI~DI~~~~Git~~~~~~~n~~~~d~tl~~~~~~~~~~~vFtNlVdfD~~yGHRrDv~ 302 (397)
T COG1015 223 KPFAPTVLDKLKEAGRPVIAIGKIADIYAGQGITEKVKAVSNMDGMDVTLEEMKTAEFNGLVFTNLVDFDSLYGHRRDVA 302 (397)
T ss_pred CCChhhHHHHHHHcCCceEEEeeHHhhhccccccccccCCCcHHHHHHHHHHHhcCCCCcEEEEeeeecccccccccchH
Confidence 344578899999999988765 2333445555665554221 1333333332223344667
Q ss_pred HHHHHHHHc---------CCCCCcEEEE-ecChhh
Q 025896 169 PYFKALEML---------KVSKDHTFVF-EDSVSG 193 (246)
Q Consensus 169 ~~~~~~~~~---------~~~~~~~~~i-gD~~~D 193 (246)
.|..+++.+ .++++++++| .|.-||
T Consensus 303 gYa~aLe~FD~rL~e~~~~l~edDlLiiTADHGnD 337 (397)
T COG1015 303 GYAAALEEFDRRLPELIENLREDDLLIITADHGND 337 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCEEEEecCCCCC
Confidence 777777765 3567777766 666665
No 420
>cd08585 GDPD_like_3 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity with Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=34.33 E-value=75 Score=24.31 Aligned_cols=37 Identities=11% Similarity=0.052 Sum_probs=27.9
Q ss_pred HHHHHHHHHc-CCeEEEEeCCCHHHHHHHHHhcCCCCcc
Q 025896 114 DKVKKWIEDR-GLKRAAVTNAPRENAELMISKLGLSDFF 151 (246)
Q Consensus 114 ~~~l~~l~~~-g~~i~i~s~~~~~~~~~~l~~~~l~~~f 151 (246)
.++++.+|+. |+++.+.|-++...++..++ +|..-.|
T Consensus 198 ~~~v~~~~~~~G~~v~vWTVnd~~~~~~l~~-~G~~~i~ 235 (237)
T cd08585 198 NPFVTLARALLGMPVIVWTVRTEEDIARLKQ-YADNIIF 235 (237)
T ss_pred CHHHHHHHHhcCCcEEEEeCCCHHHHHHHHH-hCCeeEe
Confidence 3678899998 99999999998887776555 4654433
No 421
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=34.24 E-value=4.1e+02 Score=25.82 Aligned_cols=58 Identities=16% Similarity=0.197 Sum_probs=37.6
Q ss_pred HHHHHHHHHcCCCCCcEEEEecChhhhHHHHhcCCCEEEEcCCCChhhhhccCCcEEecCCCC
Q 025896 168 DPYFKALEMLKVSKDHTFVFEDSVSGIKAGVAAGLPVVGLTTRNPEHVLLEANPTFLIKDYDD 230 (246)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i~~~~e 230 (246)
..+.++++++|++--....+.+...-...+...|.+++.-.... .......++++..|
T Consensus 671 ~~~~~~L~~~GIp~P~~~~~~s~ee~~~~~~~igyPvvVKP~~~-----~Gg~Gv~iv~~~ee 728 (1066)
T PRK05294 671 ERFSKLLEKLGIPQPPNGTATSVEEALEVAEEIGYPVLVRPSYV-----LGGRAMEIVYDEEE 728 (1066)
T ss_pred HHHHHHHHHcCcCCCCeEEECCHHHHHHHHHhcCCCeEEEeCCC-----CCCCcEEEECCHHH
Confidence 34667889999987777777654444456778899877664322 12234567777766
No 422
>COG1834 N-Dimethylarginine dimethylaminohydrolase [Amino acid transport and metabolism]
Probab=34.20 E-value=1.4e+02 Score=23.53 Aligned_cols=71 Identities=13% Similarity=0.119 Sum_probs=43.0
Q ss_pred HHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCC--------------CCCCCCChHHHHHHHHHcCCC
Q 025896 115 KVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDE--------------CERAKPFPDPYFKALEMLKVS 180 (246)
Q Consensus 115 ~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~--------------~~~~kp~~~~~~~~~~~~~~~ 180 (246)
++.+.++++|+.|..+.-. ..+-|.+++.+. -..++.....++..++.+|++
T Consensus 42 ~lve~l~~~gv~V~ll~~~--------------~~~Pd~VFt~D~~~v~~~~avl~r~~~p~R~gE~~~~~~~~~~lgi~ 107 (267)
T COG1834 42 ALVEALEKNGVEVHLLPPI--------------EGLPDQVFTRDPGLVTGEGAVLARMGAPERRGEEEAIKETLESLGIP 107 (267)
T ss_pred HHHHHHHHCCCEEEEcCcc--------------cCCCcceEeccceeEecccEEEeccCChhhccCHHHHHHHHHHcCCc
Confidence 5566677888888887622 122233332221 122344556777888887764
Q ss_pred -------------------CCcEEEEecCh-hhhHHHHh
Q 025896 181 -------------------KDHTFVFEDSV-SGIKAGVA 199 (246)
Q Consensus 181 -------------------~~~~~~igD~~-~Di~~a~~ 199 (246)
-.++++||.+. +|.++++.
T Consensus 108 i~~~~~~~~~eG~GD~l~~~~~~v~iG~s~RTn~egi~~ 146 (267)
T COG1834 108 IYPRVEAGVFEGAGDVLMDGGDTVYIGYSFRTNLEGIEQ 146 (267)
T ss_pred ccccccCCCccccccEEEeCCcEEEEEeccccchHHHHH
Confidence 15678888888 78877665
No 423
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=33.91 E-value=1.7e+02 Score=23.99 Aligned_cols=35 Identities=17% Similarity=0.246 Sum_probs=23.3
Q ss_pred HHHHHHcCCCCCcEEEEecChhhhHHH--HhcCCCEEEE
Q 025896 171 FKALEMLKVSKDHTFVFEDSVSGIKAG--VAAGLPVVGL 207 (246)
Q Consensus 171 ~~~~~~~~~~~~~~~~igD~~~Di~~a--~~~G~~~i~v 207 (246)
..++++ .+|+.+++|.|+..|-... -+.-.+...+
T Consensus 91 d~vl~~--~~~~~~i~VsDGaeDE~vlPiIqSr~~V~sV 127 (344)
T PF04123_consen 91 DEVLSK--FDPDSAIVVSDGAEDERVLPIIQSRVPVDSV 127 (344)
T ss_pred HHHHHh--CCCCEEEEEecChhhhhhhHhhhccCceEEE
Confidence 345554 5567999999999886543 3445556666
No 424
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=33.90 E-value=1.3e+02 Score=21.21 Aligned_cols=36 Identities=14% Similarity=0.093 Sum_probs=28.9
Q ss_pred cHHHHHHHHHHcCC-eEEEEeCCCHHHHHHHHHhcCC
Q 025896 112 GLDKVKKWIEDRGL-KRAAVTNAPRENAELMISKLGL 147 (246)
Q Consensus 112 ~~~~~l~~l~~~g~-~i~i~s~~~~~~~~~~l~~~~l 147 (246)
...+..+++++.|. .++.+|..+......+.+..++
T Consensus 52 ~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~ 88 (155)
T cd03013 52 GYVENADELKAKGVDEVICVSVNDPFVMKAWGKALGA 88 (155)
T ss_pred HHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCC
Confidence 34566788888898 5999999988888888888776
No 425
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=33.83 E-value=55 Score=25.51 Aligned_cols=28 Identities=11% Similarity=0.055 Sum_probs=23.8
Q ss_pred CCcccHHHHHHHHHHcCCeEEEEeCCCH
Q 025896 108 KPISGLDKVKKWIEDRGLKRAAVTNAPR 135 (246)
Q Consensus 108 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~ 135 (246)
.-+|+..+++++||++|+++++..+...
T Consensus 63 ~~Fpdp~~~i~~l~~~g~~~~~~~~P~v 90 (265)
T cd06589 63 GKFPNPKSMIDELHDNGVKLVLWIDPYI 90 (265)
T ss_pred hhCCCHHHHHHHHHHCCCEEEEEeChhH
Confidence 3578899999999999999998877654
No 426
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=33.79 E-value=73 Score=21.84 Aligned_cols=19 Identities=5% Similarity=0.010 Sum_probs=9.3
Q ss_pred HHHHHHHHHcCCeEEEEeC
Q 025896 114 DKVKKWIEDRGLKRAAVTN 132 (246)
Q Consensus 114 ~~~l~~l~~~g~~i~i~s~ 132 (246)
.++++..++.+..++.+|+
T Consensus 40 e~~v~aa~~~~adiVglS~ 58 (128)
T cd02072 40 EEFIDAAIETDADAILVSS 58 (128)
T ss_pred HHHHHHHHHcCCCEEEEec
Confidence 3445555555555544444
No 427
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=33.77 E-value=47 Score=26.88 Aligned_cols=100 Identities=18% Similarity=0.188 Sum_probs=60.0
Q ss_pred ccHHHHHHHHHHcCCeEEEEeCCCHHHHH---HHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEEE
Q 025896 111 SGLDKVKKWIEDRGLKRAAVTNAPRENAE---LMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEMLKVSKDHTFVF 187 (246)
Q Consensus 111 ~~~~~~l~~l~~~g~~i~i~s~~~~~~~~---~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~i 187 (246)
+...+-+.+|.+.|..++=+|-.+.+.+. .+-+++.+.=.-|.-| ..+-.......-+.++.++|.|+-.
T Consensus 36 ~aTv~QI~~L~~aG~dIVRvtv~~~e~A~A~~~Ik~~~~vPLVaDiHf------~~rla~~~~~~g~~k~RINPGNig~- 108 (361)
T COG0821 36 EATVAQIKALERAGCDIVRVTVPDMEAAEALKEIKQRLNVPLVADIHF------DYRLALEAAECGVDKVRINPGNIGF- 108 (361)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhCCCCEEEEeec------cHHHHHHhhhcCcceEEECCcccCc-
Confidence 45567788899999999988887765543 4445554431112111 1111111111225566788887643
Q ss_pred ecCh-hhhHHHHhcCCC-EEEEcCCCChhhhh
Q 025896 188 EDSV-SGIKAGVAAGLP-VVGLTTRNPEHVLL 217 (246)
Q Consensus 188 gD~~-~Di~~a~~~G~~-~i~v~~~~~~~~~~ 217 (246)
+|.. .=+++|+..|.+ -|+|++|.-..+..
T Consensus 109 ~~~v~~vVe~Ak~~g~piRIGVN~GSLek~~~ 140 (361)
T COG0821 109 KDRVREVVEAAKDKGIPIRIGVNAGSLEKRLL 140 (361)
T ss_pred HHHHHHHHHHHHHcCCCEEEecccCchhHHHH
Confidence 3455 556899999998 89999986554444
No 428
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=33.69 E-value=95 Score=20.90 Aligned_cols=36 Identities=8% Similarity=0.006 Sum_probs=26.0
Q ss_pred cccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhc
Q 025896 110 ISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKL 145 (246)
Q Consensus 110 ~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~ 145 (246)
.+.+.+.++.+.++|.++++-|.+........++.+
T Consensus 77 p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~~ 112 (124)
T PF01113_consen 77 PDAVYDNLEYALKHGVPLVIGTTGFSDEQIDELEEL 112 (124)
T ss_dssp HHHHHHHHHHHHHHT-EEEEE-SSSHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHH
Confidence 455678889999999999999888776666666653
No 429
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=33.49 E-value=1.3e+02 Score=19.31 Aligned_cols=35 Identities=11% Similarity=0.124 Sum_probs=26.4
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCC
Q 025896 113 LDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSD 149 (246)
Q Consensus 113 ~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~ 149 (246)
...+.++++..|..+.++.-. ......++..|+..
T Consensus 62 l~~~~~~~~~~g~~l~l~g~~--~~v~~~l~~~gl~~ 96 (109)
T cd07041 62 LLRLARALRLLGARTILTGIR--PEVAQTLVELGIDL 96 (109)
T ss_pred HHHHHHHHHHcCCeEEEEeCC--HHHHHHHHHhCCCh
Confidence 346778888899888877544 66777888888875
No 430
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=33.38 E-value=1.9e+02 Score=21.06 Aligned_cols=73 Identities=10% Similarity=0.011 Sum_probs=35.5
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCC-CcceEEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEEEecCh
Q 025896 113 LDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLS-DFFQVVILGDECERAKPFPDPYFKALEMLKVSKDHTFVFEDSV 191 (246)
Q Consensus 113 ~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~-~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~igD~~ 191 (246)
+.++++.+.++|++++++-+. +..+....+.+.-. +-.. +... .+.-.| +--..+++..+-+..++++||=+.
T Consensus 37 ~~~l~~~~~~~~~~vfllG~~-~~v~~~~~~~l~~~yP~l~-i~g~--~g~f~~--~~~~~i~~~I~~s~~dil~VglG~ 110 (177)
T TIGR00696 37 MEELCQRAGKEKLPIFLYGGK-PDVLQQLKVKLIKEYPKLK-IVGA--FGPLEP--EERKAALAKIARSGAGIVFVGLGC 110 (177)
T ss_pred HHHHHHHHHHcCCeEEEECCC-HHHHHHHHHHHHHHCCCCE-EEEE--CCCCCh--HHHHHHHHHHHHcCCCEEEEEcCC
Confidence 457777777788888888555 33433333332110 0011 1111 122222 223445565555556677776554
No 431
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=33.36 E-value=96 Score=20.28 Aligned_cols=37 Identities=24% Similarity=0.388 Sum_probs=28.4
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcc
Q 025896 113 LDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFF 151 (246)
Q Consensus 113 ~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f 151 (246)
+.++.+.++.+|.++.++.- .......+...|+...+
T Consensus 69 L~~~~~~~~~~g~~~~l~~~--~~~v~~~l~~~~~~~~~ 105 (117)
T PF01740_consen 69 LVDIIKELRRRGVQLVLVGL--NPDVRRILERSGLIDFI 105 (117)
T ss_dssp HHHHHHHHHHTTCEEEEESH--HHHHHHHHHHTTGHHHS
T ss_pred HHHHHHHHHHCCCEEEEEEC--CHHHHHHHHHcCCChhc
Confidence 45677888999998887743 46777789998887666
No 432
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=33.32 E-value=56 Score=23.00 Aligned_cols=27 Identities=15% Similarity=0.190 Sum_probs=22.7
Q ss_pred cccHHHHHHHHHHcCCeEEEEeCCCHH
Q 025896 110 ISGLDKVKKWIEDRGLKRAAVTNAPRE 136 (246)
Q Consensus 110 ~~~~~~~l~~l~~~g~~i~i~s~~~~~ 136 (246)
.+.+.+.++.++++|.+++.+|+....
T Consensus 92 t~~~~~~~~~a~~~g~~ii~iT~~~~s 118 (154)
T TIGR00441 92 SKNVLKAIEAAKDKGMKTITLAGKDGG 118 (154)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 467889999999999999999987443
No 433
>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.
Probab=33.22 E-value=1.1e+02 Score=22.92 Aligned_cols=34 Identities=12% Similarity=0.174 Sum_probs=25.4
Q ss_pred HHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCC
Q 025896 114 DKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLS 148 (246)
Q Consensus 114 ~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~ 148 (246)
.++++.+|+.|.++.+.|-++...+...+ ..|++
T Consensus 180 ~~~v~~~~~~G~~v~~wtvn~~~~~~~~~-~~Gvd 213 (220)
T cd08579 180 KEFIRQAHQNGKKVYVWTVNDPDDMQRYL-AMGVD 213 (220)
T ss_pred HHHHHHHHHCCCEEEEEcCCCHHHHHHHH-HcCCC
Confidence 47889999999999999887766665444 45654
No 434
>cd08582 GDPD_like_2 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=33.17 E-value=1e+02 Score=23.29 Aligned_cols=35 Identities=31% Similarity=0.339 Sum_probs=27.6
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCC
Q 025896 113 LDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLS 148 (246)
Q Consensus 113 ~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~ 148 (246)
-.++++.+++.|+++.+.|-++...++..++ .|++
T Consensus 190 ~~~~v~~~~~~G~~v~~wTvn~~~~~~~l~~-~GVd 224 (233)
T cd08582 190 NPAFIKALRDAGLKLNVWTVDDAEDAKRLIE-LGVD 224 (233)
T ss_pred CHHHHHHHHHCCCEEEEEeCCCHHHHHHHHH-CCCC
Confidence 3588999999999999999888777766554 4654
No 435
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=33.03 E-value=2.7e+02 Score=22.66 Aligned_cols=87 Identities=8% Similarity=0.040 Sum_probs=44.8
Q ss_pred ccHHHHHHHHHHcCCeEEEEeCCCH---HHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEEE
Q 025896 111 SGLDKVKKWIEDRGLKRAAVTNAPR---ENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEMLKVSKDHTFVF 187 (246)
Q Consensus 111 ~~~~~~l~~l~~~g~~i~i~s~~~~---~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~i 187 (246)
+...++++.|.+.|++++++.+... ...+.+.+...-....+ -.++-...-+-.+++... ++|
T Consensus 202 e~fa~l~~~L~~~~~~vvl~ggp~e~e~~~~~~i~~~~~~~~~~~--------l~g~~sL~el~ali~~a~------l~v 267 (352)
T PRK10422 202 DKFSAVIDALQARGYEVVLTSGPDKDDLACVNEIAQGCQTPPVTA--------LAGKTTFPELGALIDHAQ------LFI 267 (352)
T ss_pred HHHHHHHHHHHHCCCeEEEEcCCChHHHHHHHHHHHhcCCCcccc--------ccCCCCHHHHHHHHHhCC------EEE
Confidence 3466778888777887776644322 12233333221111111 012223333444444433 356
Q ss_pred ecChhhhHHHHhcCCCEEEEcCCC
Q 025896 188 EDSVSGIKAGVAAGLPVVGLTTRN 211 (246)
Q Consensus 188 gD~~~Di~~a~~~G~~~i~v~~~~ 211 (246)
|..---+-+|..+|.+++.+-.+.
T Consensus 268 ~nDSGp~HlAaA~g~P~v~lfGpt 291 (352)
T PRK10422 268 GVDSAPAHIAAAVNTPLICLFGAT 291 (352)
T ss_pred ecCCHHHHHHHHcCCCEEEEECCC
Confidence 555555667778899988776554
No 436
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=32.38 E-value=3e+02 Score=23.08 Aligned_cols=116 Identities=9% Similarity=0.086 Sum_probs=61.2
Q ss_pred ccHHHHHHHHHHcCCeEEEEeCCCH--HHHHHHHHhcCCCCcceEEEecCC-CCCCCCChHHHHHHHHHcCCCCCcEEEE
Q 025896 111 SGLDKVKKWIEDRGLKRAAVTNAPR--ENAELMISKLGLSDFFQVVILGDE-CERAKPFPDPYFKALEMLKVSKDHTFVF 187 (246)
Q Consensus 111 ~~~~~~l~~l~~~g~~i~i~s~~~~--~~~~~~l~~~~l~~~f~~~~~~~~-~~~~kp~~~~~~~~~~~~~~~~~~~~~i 187 (246)
.+...+++.+++.++.+++...... ......++.+|+. ++.... .-...-+....+.+++++|++.-....+
T Consensus 49 ~d~~~l~~~~~~~~id~vi~~~e~~l~~~~~~~l~~~gi~-----~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~ 123 (420)
T PRK00885 49 TDIEALVAFAKEEGIDLTVVGPEAPLVAGIVDAFRAAGLP-----IFGPTKAAAQLEGSKAFAKDFMARYGIPTAAYETF 123 (420)
T ss_pred CCHHHHHHHHHHhCCCEEEECCchHHHHHHHHHHHHCCCc-----EECcCHHHHHHHcCHHHHHHHHHHcCCCCCCeEEe
Confidence 3455677777777776666433221 1223445555653 111110 0011123345667889999976666666
Q ss_pred ecChhhh-HHHHhcCCCEEEEcCCCChhhhhccCCcEEecCCCChhhHHHHhh
Q 025896 188 EDSVSGI-KAGVAAGLPVVGLTTRNPEHVLLEANPTFLIKDYDDPKLWSALEE 239 (246)
Q Consensus 188 gD~~~Di-~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i~~~~el~~~~~l~~ 239 (246)
.+ ..++ ..+...|.+++.-..... ......++++..| +...++.
T Consensus 124 ~~-~~~~~~~~~~~~~P~VvKP~~~~-----gs~Gv~~v~~~~e--l~~~~~~ 168 (420)
T PRK00885 124 TD-AEEALAYLDEKGAPIVVKADGLA-----AGKGVVVAMTLEE--AKAAVDD 168 (420)
T ss_pred CC-HHHHHHHHHHcCCCEEEEeCCCC-----CCCcEEEeCCHHH--HHHHHHH
Confidence 44 4443 445677888777654321 1223467777666 4444444
No 437
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=32.33 E-value=1.2e+02 Score=19.38 Aligned_cols=35 Identities=11% Similarity=0.284 Sum_probs=27.8
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCC
Q 025896 113 LDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGL 147 (246)
Q Consensus 113 ~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l 147 (246)
+..+.+.|++.|++++.-....-...++.+..+|.
T Consensus 41 ~~~~~~~L~~~g~P~Y~hv~~~N~~~~r~~~~lg~ 75 (89)
T PF08444_consen 41 MYHLAQYLHKLGFPFYGHVDEDNEASQRLSKSLGF 75 (89)
T ss_pred HHHHHHHHHHCCCCeEeehHhccHHHHHHHHHCCC
Confidence 34667889999999998887777778888887764
No 438
>TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase.
Probab=31.98 E-value=3e+02 Score=22.92 Aligned_cols=35 Identities=23% Similarity=0.174 Sum_probs=27.5
Q ss_pred cccHHHHHHHHHHcCCeEEE-EeCCCHHHHHHHHHh
Q 025896 110 ISGLDKVKKWIEDRGLKRAA-VTNAPRENAELMISK 144 (246)
Q Consensus 110 ~~~~~~~l~~l~~~g~~i~i-~s~~~~~~~~~~l~~ 144 (246)
.++..+++++|+++|+.+.+ -|+.+.+.+...++.
T Consensus 176 ~~~~~~~i~~l~~~gi~vs~GHs~A~~~~~~~a~~~ 211 (380)
T TIGR00221 176 EDQHFELIRHLKDAGIIVSAGHTNATYELAKAAFKA 211 (380)
T ss_pred CCChHHHHHHHHHCCeEEEeeCCCCCHHHHHHHHHc
Confidence 57899999999999998876 577776666665553
No 439
>PRK08005 epimerase; Validated
Probab=31.79 E-value=2.3e+02 Score=21.41 Aligned_cols=93 Identities=11% Similarity=0.027 Sum_probs=55.8
Q ss_pred ccHHHHHHHHHHcCCeEEEEeCC--CHHHHHHHHHhcCCCCcceEEEecCCC-CCCCCChHHHHHHHHHcCCCCCcEEEE
Q 025896 111 SGLDKVKKWIEDRGLKRAAVTNA--PRENAELMISKLGLSDFFQVVILGDEC-ERAKPFPDPYFKALEMLKVSKDHTFVF 187 (246)
Q Consensus 111 ~~~~~~l~~l~~~g~~i~i~s~~--~~~~~~~~l~~~~l~~~f~~~~~~~~~-~~~kp~~~~~~~~~~~~~~~~~~~~~i 187 (246)
+...++|+++|+.|.+.+++-|. +...+...+..... =.+.+.+.. +..+-.+..+.++.+-...-++.-+-|
T Consensus 93 ~~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~~vD~----VlvMsV~PGf~GQ~f~~~~~~KI~~l~~~~~~~~I~V 168 (210)
T PRK08005 93 QNPSEILADIRAIGAKAGLALNPATPLLPYRYLALQLDA----LMIMTSEPDGRGQQFIAAMCEKVSQSREHFPAAECWA 168 (210)
T ss_pred cCHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHhcCE----EEEEEecCCCccceecHHHHHHHHHHHHhcccCCEEE
Confidence 45678999999999999988765 34555666554322 112333322 223344556666555333333323677
Q ss_pred ecCh--hhhHHHHhcCCCEEEE
Q 025896 188 EDSV--SGIKAGVAAGLPVVGL 207 (246)
Q Consensus 188 gD~~--~Di~~a~~~G~~~i~v 207 (246)
+-+. ..+..+.++|...+.+
T Consensus 169 DGGI~~~~i~~l~~aGad~~V~ 190 (210)
T PRK08005 169 DGGITLRAARLLAAAGAQHLVI 190 (210)
T ss_pred ECCCCHHHHHHHHHCCCCEEEE
Confidence 5555 5677788899986666
No 440
>PRK00973 glucose-6-phosphate isomerase; Provisional
Probab=31.56 E-value=3.4e+02 Score=23.32 Aligned_cols=85 Identities=14% Similarity=0.099 Sum_probs=50.9
Q ss_pred CeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCCCCCC--ChHHHHHHHHHcCCC-CCcEEEEecChh--hhHHHHh
Q 025896 125 LKRAAVTNAPRENAELMISKLGLSDFFQVVILGDECERAKP--FPDPYFKALEMLKVS-KDHTFVFEDSVS--GIKAGVA 199 (246)
Q Consensus 125 ~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp--~~~~~~~~~~~~~~~-~~~~~~igD~~~--Di~~a~~ 199 (246)
.++.++.|.++..+...++.+..... -.++.|....-..| +-..++.+++++|.. ..++++|-|... =-+.|++
T Consensus 109 ~~l~~~~n~dp~~~~~~l~~l~~~~T-l~iviSKSGtT~ET~~~f~~~~~~l~~~g~~~~~~~vaiTd~~~g~L~~~A~~ 187 (446)
T PRK00973 109 PRVFVLDNVDPEKTASILDVIDLEKT-LFNVISKSGNTAETLANYLIIRGILEKLGLDPKKHLVFTTDPEKGKLKKIAEK 187 (446)
T ss_pred ceEEEeCCCCHHHHHHHHHhCCcccE-EEEEEeCCCCCHHHHHHHHHHHHHHHhcCccccceEEEEcCCCccchHHHHHH
Confidence 45778899998999999998766542 23333332221111 222333445555532 346888988432 2456888
Q ss_pred cCCCEEEEcCC
Q 025896 200 AGLPVVGLTTR 210 (246)
Q Consensus 200 ~G~~~i~v~~~ 210 (246)
-|+.++.+..+
T Consensus 188 ~g~~~f~ip~~ 198 (446)
T PRK00973 188 EGYRTLEIPEN 198 (446)
T ss_pred cCCcEEeeCCC
Confidence 89987777654
No 441
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=31.48 E-value=64 Score=25.62 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=22.2
Q ss_pred CCcccHHHHHHHHHHcCCeEEEEeCC
Q 025896 108 KPISGLDKVKKWIEDRGLKRAAVTNA 133 (246)
Q Consensus 108 ~~~~~~~~~l~~l~~~g~~i~i~s~~ 133 (246)
.-||+..+++++||+.|+++++....
T Consensus 71 ~~FPdp~~mi~~Lh~~G~k~v~~v~P 96 (292)
T cd06595 71 KLFPDPEKLLQDLHDRGLKVTLNLHP 96 (292)
T ss_pred hcCCCHHHHHHHHHHCCCEEEEEeCC
Confidence 45799999999999999999887654
No 442
>cd08570 GDPD_YPL206cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL206cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL206cp and uncharacterized hypothetical homologs existing in fungi. The product of S. cerevisiae ORF YPL206c (PGC1), YPL206cp (Pgc1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL206cp is an integral membrane protein with a single GDPD domain following by a short hydrophobic C-terminal tail that may function as a membrane anchor. This protein plays an essential role in the regulation of the cardiolipin (CL) biosynthetic pathway in yeast by removing the excess phosphatidylglycerol (PG) content of membranes via a phospholip
Probab=31.25 E-value=1.2e+02 Score=22.93 Aligned_cols=35 Identities=20% Similarity=0.163 Sum_probs=26.8
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCC
Q 025896 113 LDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLS 148 (246)
Q Consensus 113 ~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~ 148 (246)
..++++++++.|+++.+.|=++...+...++ +|++
T Consensus 193 ~~~~v~~~~~~gl~v~~wTvn~~~~~~~l~~-~gvd 227 (234)
T cd08570 193 GQAFLPELKKNGKKVFVWTVNTEEDMRYAIR-LGVD 227 (234)
T ss_pred CHHHHHHHHHCCCEEEEEecCCHHHHHHHHH-CCCC
Confidence 4688999999999999999887766665444 4653
No 443
>PRK10671 copA copper exporting ATPase; Provisional
Probab=30.91 E-value=27 Score=32.39 Aligned_cols=26 Identities=38% Similarity=0.742 Sum_probs=20.2
Q ss_pred cccccccCCcceEEEeCCCccccChh
Q 025896 13 KDALAKLAPLEAVLFDVDGTLCDSDP 38 (246)
Q Consensus 13 ~~~~~~~~~~k~iifD~DGTL~~~~~ 38 (246)
......+..++.|+||-.|||+....
T Consensus 508 ~~~le~l~~v~~v~fDKTGTLT~g~~ 533 (834)
T PRK10671 508 ADALQRASTLDTLVFDKTGTLTEGKP 533 (834)
T ss_pred HHHHHhhcCCCEEEEcCCCccccCce
Confidence 33445567899999999999997653
No 444
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=30.85 E-value=59 Score=24.91 Aligned_cols=27 Identities=11% Similarity=-0.001 Sum_probs=22.4
Q ss_pred CcccH-HHHHHHHHHcCCeEEEEeCCCH
Q 025896 109 PISGL-DKVKKWIEDRGLKRAAVTNAPR 135 (246)
Q Consensus 109 ~~~~~-~~~l~~l~~~g~~i~i~s~~~~ 135 (246)
+.++. .++++.+++.|+++.+.||+..
T Consensus 83 l~~~~~~~l~~~~k~~g~~i~l~TNG~~ 110 (246)
T PRK11145 83 LQAEFVRDWFRACKKEGIHTCLDTNGFV 110 (246)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 45564 5899999999999999999963
No 445
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=30.83 E-value=2.7e+02 Score=22.10 Aligned_cols=63 Identities=14% Similarity=0.082 Sum_probs=43.3
Q ss_pred cHHHHHHHHHHcC-CeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHcCC
Q 025896 112 GLDKVKKWIEDRG-LKRAAVTNAPRENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEMLKV 179 (246)
Q Consensus 112 ~~~~~l~~l~~~g-~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~ 179 (246)
++-+.|+++++.| ++-+=|||.+...++..+...++...+..+-.. ...+.++ +...|++.|+
T Consensus 121 etw~alE~l~~~G~ir~IGVSNF~~~~L~~l~~~~~~~p~~NQIe~h----p~~~q~e-l~~~~~~~gI 184 (280)
T COG0656 121 ETWKALEELVDEGLIRAIGVSNFGVEHLEELLSLAKVKPAVNQIEYH----PYLRQPE-LLPFCQRHGI 184 (280)
T ss_pred HHHHHHHHHHhcCCccEEEeeCCCHHHHHHHHHhcCCCCceEEEEec----cCCCcHH-HHHHHHHcCC
Confidence 7888899999998 555569999999999999887766655555432 2233333 4555555554
No 446
>TIGR00664 DNA_III_psi DNA polymerase III, psi subunit. This small subunit of the DNA polymerase III holoenzyme in E. coli and related species appearsto have a narrow taxonomic distribution. It is not found so far outside the gamma subdivision proteobacteria.
Probab=30.76 E-value=1.2e+02 Score=20.96 Aligned_cols=84 Identities=10% Similarity=0.091 Sum_probs=51.9
Q ss_pred HHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEEEecChhhhHHHH
Q 025896 119 WIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEMLKVSKDHTFVFEDSVSGIKAGV 198 (246)
Q Consensus 119 ~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~igD~~~Di~~a~ 198 (246)
.|++.|+.-+.+.... .... -....+.+-...++.+++.. .. +...+..+++.+++++++++++ +...+.+..
T Consensus 8 lLqeMGItqW~Lr~P~--~L~G-e~~i~Lp~~~rLliVa~~~p-~~-~~~L~~dILrsl~L~~~q~~~l--t~eql~~L~ 80 (133)
T TIGR00664 8 LLQELGISQWELRRPE--ALQG-EIAIAIAAHIRLIMVANDEN-AL-SDPLLADVLLALNLKKDNCLCL--NPDKIAHLE 80 (133)
T ss_pred HHHHcCCceEEecCcc--cccC-CcccCCchhceEEEEeCCCC-cc-cChHHHHHHHHcCCCHHHeeee--CHHHHhhCC
Confidence 4678888888886652 2221 11123444456666666543 22 2236999999999999999998 666677665
Q ss_pred hcCCCEEEEcC
Q 025896 199 AAGLPVVGLTT 209 (246)
Q Consensus 199 ~~G~~~i~v~~ 209 (246)
.-...-+|+..
T Consensus 81 ~~~~~~~W~lG 91 (133)
T TIGR00664 81 CGQHCNSWLLG 91 (133)
T ss_pred CCCCCeEEEee
Confidence 44444455543
No 447
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=30.70 E-value=2.8e+02 Score=22.17 Aligned_cols=35 Identities=6% Similarity=0.270 Sum_probs=26.0
Q ss_pred CcccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHh
Q 025896 109 PISGLDKVKKWIEDRGLKRAAVTNAPRENAELMISK 144 (246)
Q Consensus 109 ~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~ 144 (246)
-..+++++++.+++.|+.|+-.-+. ....+.+++.
T Consensus 58 T~~ei~ei~~yA~~~gI~vIPeid~-pGH~~~~l~~ 92 (301)
T cd06565 58 TKEEIREIDDYAAELGIEVIPLIQT-LGHLEFILKH 92 (301)
T ss_pred CHHHHHHHHHHHHHcCCEEEecCCC-HHHHHHHHhC
Confidence 3467889999999999988876665 4666666653
No 448
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=30.66 E-value=52 Score=25.69 Aligned_cols=26 Identities=23% Similarity=0.059 Sum_probs=22.9
Q ss_pred cccHHHHHHHHHHcCCeEEEEeCCCH
Q 025896 110 ISGLDKVKKWIEDRGLKRAAVTNAPR 135 (246)
Q Consensus 110 ~~~~~~~l~~l~~~g~~i~i~s~~~~ 135 (246)
.+.+.++++.+|+.|+.+++.||+..
T Consensus 98 ~e~~~~~~~~ake~Gl~~~l~TnG~~ 123 (260)
T COG1180 98 AEFALDLLRAAKERGLHVALDTNGFL 123 (260)
T ss_pred HHHHHHHHHHHHHCCCcEEEEcCCCC
Confidence 46688999999999999999999854
No 449
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=30.36 E-value=1.5e+02 Score=18.83 Aligned_cols=35 Identities=14% Similarity=0.148 Sum_probs=25.8
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCC
Q 025896 113 LDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSD 149 (246)
Q Consensus 113 ~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~ 149 (246)
...+.+++++.|.++.++.-. ......++..|+..
T Consensus 60 L~~l~~~~~~~g~~l~l~~~~--~~v~~~l~~~gl~~ 94 (100)
T cd06844 60 LLERSRLAEAVGGQFVLTGIS--PAVRITLTESGLDK 94 (100)
T ss_pred HHHHHHHHHHcCCEEEEECCC--HHHHHHHHHhCchh
Confidence 346677888899888877544 66777788888764
No 450
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=30.36 E-value=77 Score=23.35 Aligned_cols=27 Identities=15% Similarity=0.138 Sum_probs=22.9
Q ss_pred cccHHHHHHHHHHcCCeEEEEeCCCHH
Q 025896 110 ISGLDKVKKWIEDRGLKRAAVTNAPRE 136 (246)
Q Consensus 110 ~~~~~~~l~~l~~~g~~i~i~s~~~~~ 136 (246)
.+.+.+.++.++++|.+++.+|+....
T Consensus 124 t~~~i~~~~~ak~~g~~iI~iT~~~~s 150 (192)
T PRK00414 124 SGNIIKAIEAARAKGMKVITLTGKDGG 150 (192)
T ss_pred CHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 467889999999999999999987543
No 451
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=30.29 E-value=88 Score=18.13 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=19.8
Q ss_pred HHHHHHHHHHcCCeEEEEeCCC
Q 025896 113 LDKVKKWIEDRGLKRAAVTNAP 134 (246)
Q Consensus 113 ~~~~l~~l~~~g~~i~i~s~~~ 134 (246)
..++++++++.|+..+.+|+.+
T Consensus 17 ~~~~~~~a~~~g~~~v~iTDh~ 38 (67)
T smart00481 17 PEELVKRAKELGLKAIAITDHG 38 (67)
T ss_pred HHHHHHHHHHcCCCEEEEeeCC
Confidence 5689999999999999999886
No 452
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=30.12 E-value=2.7e+02 Score=21.79 Aligned_cols=89 Identities=12% Similarity=0.169 Sum_probs=46.3
Q ss_pred HHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHcCCC------------CCc
Q 025896 116 VKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEMLKVS------------KDH 183 (246)
Q Consensus 116 ~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~------------~~~ 183 (246)
+-+.++++||.+.+++.......+..++.+ +....|+++.... ..+...+....+. +++ .-.
T Consensus 23 Ie~~a~~~Gy~l~l~~t~~~~~~e~~i~~l-~~~~vDGiI~~s~----~~~~~~l~~~~~~-~iPvV~~~~~~~~~~~~~ 96 (279)
T PF00532_consen 23 IEQEAREHGYQLLLCNTGDDEEKEEYIELL-LQRRVDGIILASS----ENDDEELRRLIKS-GIPVVLIDRYIDNPEGVP 96 (279)
T ss_dssp HHHHHHHTTCEEEEEEETTTHHHHHHHHHH-HHTTSSEEEEESS----SCTCHHHHHHHHT-TSEEEEESS-SCTTCTSC
T ss_pred HHHHHHHcCCEEEEecCCCchHHHHHHHHH-HhcCCCEEEEecc----cCChHHHHHHHHc-CCCEEEEEeccCCcccCC
Confidence 345678999999877655444444555544 2234677776532 2223345555554 321 123
Q ss_pred EEEEecChhhhHHH---HhcCCCE-EEEcCC
Q 025896 184 TFVFEDSVSGIKAG---VAAGLPV-VGLTTR 210 (246)
Q Consensus 184 ~~~igD~~~Di~~a---~~~G~~~-i~v~~~ 210 (246)
++.++|...-..+. .+.|.+- |++-.+
T Consensus 97 ~V~~D~~~a~~~a~~~Li~~Gh~~~I~~i~~ 127 (279)
T PF00532_consen 97 SVYIDNYEAGYEATEYLIKKGHRRPIAFIGG 127 (279)
T ss_dssp EEEEEHHHHHHHHHHHHHHTTCCSTEEEEEE
T ss_pred EEEEcchHHHHHHHHHHHhcccCCeEEEEec
Confidence 55555444333333 3357766 544433
No 453
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=29.77 E-value=1.2e+02 Score=23.52 Aligned_cols=35 Identities=23% Similarity=0.312 Sum_probs=23.9
Q ss_pred HHHHHHHHHHcCCeEEEEe----CCCHHHHHHHHHhcCCC
Q 025896 113 LDKVKKWIEDRGLKRAAVT----NAPRENAELMISKLGLS 148 (246)
Q Consensus 113 ~~~~l~~l~~~g~~i~i~s----~~~~~~~~~~l~~~~l~ 148 (246)
..++++++|+.|..+.+.| +++...++. +..+|++
T Consensus 212 ~~~~v~~~~~~Gl~v~~wT~~~~~n~~~~~~~-l~~~Gvd 250 (265)
T cd08564 212 TEEFVKKAHENGLKVMTYFDEPVNDNEEDYKV-YLELGVD 250 (265)
T ss_pred hHHHHHHHHHcCCEEEEecCCCCCCCHHHHHH-HHHcCCC
Confidence 3577888999999999998 444444444 4455653
No 454
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=29.76 E-value=1.3e+02 Score=22.89 Aligned_cols=34 Identities=18% Similarity=0.143 Sum_probs=26.1
Q ss_pred HHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCC
Q 025896 114 DKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLS 148 (246)
Q Consensus 114 ~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~ 148 (246)
.++++++++.|+++.+.|-+....++..++. |++
T Consensus 195 ~~~v~~~~~~Gl~v~vwTVn~~~~~~~l~~~-GVd 228 (237)
T cd08583 195 DKLIEKLNKAGIYVYVYTINDLKDAQEYKKL-GVY 228 (237)
T ss_pred HHHHHHHHHCCCEEEEEeCCCHHHHHHHHHc-CCC
Confidence 5888999999999999998876666655544 654
No 455
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=29.73 E-value=1.1e+02 Score=24.23 Aligned_cols=28 Identities=14% Similarity=0.068 Sum_probs=23.0
Q ss_pred CCcccH-HHHHHHHHHcCCeEEEEeCCCH
Q 025896 108 KPISGL-DKVKKWIEDRGLKRAAVTNAPR 135 (246)
Q Consensus 108 ~~~~~~-~~~l~~l~~~g~~i~i~s~~~~ 135 (246)
.+.++. .++++++++.|+.+.+.||+..
T Consensus 137 ll~~~~l~~l~~~~k~~g~~~~i~TnG~~ 165 (295)
T TIGR02494 137 LLQPEFALALLQACHERGIHTAVETSGFT 165 (295)
T ss_pred hchHHHHHHHHHHHHHcCCcEeeeCCCCC
Confidence 345665 6899999999999999999853
No 456
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=29.71 E-value=2.9e+02 Score=22.60 Aligned_cols=64 Identities=11% Similarity=0.189 Sum_probs=46.5
Q ss_pred HHHHHcCCCCCcEEEE-ecC-h--hhhHHHHhcCCCEEEEcCCC-Chhhhhc-cCCcEEecCCCChhhHH
Q 025896 172 KALEMLKVSKDHTFVF-EDS-V--SGIKAGVAAGLPVVGLTTRN-PEHVLLE-ANPTFLIKDYDDPKLWS 235 (246)
Q Consensus 172 ~~~~~~~~~~~~~~~i-gD~-~--~Di~~a~~~G~~~i~v~~~~-~~~~~~~-~~~~~~i~~~~el~~~~ 235 (246)
..+++.|+.|.+.+.| |=+ + -.++-|++.|+.+..++++. .+++... .+|+.-+.+..|-....
T Consensus 172 spLk~~g~~pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~ 241 (360)
T KOG0023|consen 172 SPLKRSGLGPGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMK 241 (360)
T ss_pred ehhHHcCCCCCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHH
Confidence 5688889999876655 332 2 57899999999999999996 4555444 68888888886544333
No 457
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=29.61 E-value=2.4e+02 Score=21.01 Aligned_cols=87 Identities=8% Similarity=-0.025 Sum_probs=47.4
Q ss_pred cHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCC-C---CCCCCChHHHH---HHHHHcCCCCCcE
Q 025896 112 GLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDE-C---ERAKPFPDPYF---KALEMLKVSKDHT 184 (246)
Q Consensus 112 ~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~-~---~~~kp~~~~~~---~~~~~~~~~~~~~ 184 (246)
.+.++++.+++.|+++++---+....--..+..+.. |.+-.... . ....-....+. ..++.+++ .+
T Consensus 133 ~~~~~~~~l~~~G~~l~ld~~g~~~~~~~~l~~~~~----d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~---~v 205 (240)
T cd01948 133 EALATLRRLRALGVRIALDDFGTGYSSLSYLKRLPV----DYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGL---KV 205 (240)
T ss_pred HHHHHHHHHHHCCCeEEEeCCCCcHhhHHHHHhCCC----CEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCC---eE
Confidence 378899999999999998432322222233444432 22221110 0 00011122233 33444443 45
Q ss_pred EEEe-cChhhhHHHHhcCCCEE
Q 025896 185 FVFE-DSVSGIKAGVAAGLPVV 205 (246)
Q Consensus 185 ~~ig-D~~~Di~~a~~~G~~~i 205 (246)
++=| ++..++..++..|+..+
T Consensus 206 ia~gVe~~~~~~~~~~~gi~~~ 227 (240)
T cd01948 206 VAEGVETEEQLELLRELGCDYV 227 (240)
T ss_pred EEEecCCHHHHHHHHHcCCCee
Confidence 6656 77799999999998644
No 458
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=29.54 E-value=3.4e+02 Score=22.71 Aligned_cols=85 Identities=12% Similarity=0.040 Sum_probs=47.8
Q ss_pred CCCcccHHHHHHH-HHHcC-CeEEEEeCCCH---HHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHc-CCC
Q 025896 107 LKPISGLDKVKKW-IEDRG-LKRAAVTNAPR---ENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEML-KVS 180 (246)
Q Consensus 107 ~~~~~~~~~~l~~-l~~~g-~~i~i~s~~~~---~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~-~~~ 180 (246)
+..-.|..+.+.. ++..| .+..|+|+... .....+++.+......-.++ .+ -.+.|.-+.....++.+ +.+
T Consensus 10 i~fG~g~l~~l~~~~~~~g~~r~liVTd~~~~~~g~~~~v~~~L~~~~i~~~if-~~--v~p~P~~~~v~~~~~~~~~~~ 86 (377)
T COG1454 10 ILFGRGSLKELGEEVKRLGAKRALIVTDRGLAKLGLLDKVLDSLDAAGIEYEVF-DE--VEPEPTIETVEAGAEVAREFG 86 (377)
T ss_pred EEecCChHHHHHHHHHhcCCCceEEEECCccccchhHHHHHHHHHhcCCeEEEe-cC--CCCCCCHHHHHHHHHHHHhcC
Confidence 3344556555554 44445 67888988752 34555555554433111121 11 23556666677666665 567
Q ss_pred CCcEEEEecCh-hhh
Q 025896 181 KDHTFVFEDSV-SGI 194 (246)
Q Consensus 181 ~~~~~~igD~~-~Di 194 (246)
++-++.+|-+- -|.
T Consensus 87 ~D~iIalGGGS~~D~ 101 (377)
T COG1454 87 PDTIIALGGGSVIDA 101 (377)
T ss_pred CCEEEEeCCccHHHH
Confidence 78899997654 565
No 459
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=29.53 E-value=2.7e+02 Score=21.66 Aligned_cols=95 Identities=12% Similarity=0.098 Sum_probs=51.8
Q ss_pred CCcccHHHHHHHHHHcCCeEE-EEeCCC-HHHHHHHHHhcCCCCcceEEEecCCC-CCC-CCChH---HHHHHHHHcCCC
Q 025896 108 KPISGLDKVKKWIEDRGLKRA-AVTNAP-RENAELMISKLGLSDFFQVVILGDEC-ERA-KPFPD---PYFKALEMLKVS 180 (246)
Q Consensus 108 ~~~~~~~~~l~~l~~~g~~i~-i~s~~~-~~~~~~~l~~~~l~~~f~~~~~~~~~-~~~-kp~~~---~~~~~~~~~~~~ 180 (246)
.+.+...++++.++++|...+ +++-.. .+.+..+.+... . |--+++.... +.. .-.+. .++++-+..+.
T Consensus 124 lp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~--g-fiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~~~- 199 (256)
T TIGR00262 124 LPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQ--G-FVYLVSRAGVTGARNRAASALNELVKRLKAYSAK- 199 (256)
T ss_pred CChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCC--C-CEEEEECCCCCCCcccCChhHHHHHHHHHhhcCC-
Confidence 345677889999999998866 444433 345555555432 1 2233333222 221 11222 22222222222
Q ss_pred CCcEEEEecCh---hhhHHHHhcCCCEEEEcC
Q 025896 181 KDHTFVFEDSV---SGIKAGVAAGLPVVGLTT 209 (246)
Q Consensus 181 ~~~~~~igD~~---~Di~~a~~~G~~~i~v~~ 209 (246)
-+++|=+. .++..+.++|...+.+.+
T Consensus 200 ---pi~vgfGI~~~e~~~~~~~~GADgvVvGS 228 (256)
T TIGR00262 200 ---PVLVGFGISKPEQVKQAIDAGADGVIVGS 228 (256)
T ss_pred ---CEEEeCCCCCHHHHHHHHHcCCCEEEECH
Confidence 36666554 588888889998888843
No 460
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=29.37 E-value=3.6e+02 Score=22.95 Aligned_cols=116 Identities=16% Similarity=0.151 Sum_probs=65.1
Q ss_pred HHHHHHHHHHcCCeEEEEeCC---------CHHHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHcCCCCCc
Q 025896 113 LDKVKKWIEDRGLKRAAVTNA---------PRENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEMLKVSKDH 183 (246)
Q Consensus 113 ~~~~l~~l~~~g~~i~i~s~~---------~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~ 183 (246)
+.+++++|.++|+++++++-. +........+.+.-..... ++ .+. .++.-+..++..+.
T Consensus 262 la~~i~~Li~~g~~Vv~lp~~~~~~~~~~dD~~~~~~l~~~~~~~~~~~-vi-~~~-----~~~~e~~~iIs~~d----- 329 (426)
T PRK10017 262 FAGVVNRIIDEGYQVIALSTCTGIDSYNKDDRMVALNLRQHVSDPARYH-VV-MDE-----LNDLEMGKILGACE----- 329 (426)
T ss_pred HHHHHHHHHHCCCeEEEEecccCccCCCCchHHHHHHHHHhccccccee-Ee-cCC-----CChHHHHHHHhhCC-----
Confidence 456778888889999988842 2223344555543211111 11 111 12223334554433
Q ss_pred EEEEecChhhhHHHHhcCCCEEEEcCCCChhhhhcc--CCcEE--ecCCCChhhHHHHhhhh
Q 025896 184 TFVFEDSVSGIKAGVAAGLPVVGLTTRNPEHVLLEA--NPTFL--IKDYDDPKLWSALEELD 241 (246)
Q Consensus 184 ~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~--~~~~~--i~~~~el~~~~~l~~~~ 241 (246)
++||=..+-+-.|..+|.+++.+.+...-...... .+.++ +++++.-.+...+.++-
T Consensus 330 -l~ig~RlHa~I~a~~~gvP~i~i~Y~~K~~~~~~~lg~~~~~~~~~~l~~~~Li~~v~~~~ 390 (426)
T PRK10017 330 -LTVGTRLHSAIISMNFGTPAIAINYEHKSAGIMQQLGLPEMAIDIRHLLDGSLQAMVADTL 390 (426)
T ss_pred -EEEEecchHHHHHHHcCCCEEEeeehHHHHHHHHHcCCccEEechhhCCHHHHHHHHHHHH
Confidence 59999999999999999999999887544333321 23342 34544433544444443
No 461
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=29.22 E-value=63 Score=25.18 Aligned_cols=46 Identities=17% Similarity=0.007 Sum_probs=34.6
Q ss_pred CChHHHHHHHHHcCCCCCcEEEEecChhhhHHHHhc---CCCEEEEcCC
Q 025896 165 PFPDPYFKALEMLKVSKDHTFVFEDSVSGIKAGVAA---GLPVVGLTTR 210 (246)
Q Consensus 165 p~~~~~~~~~~~~~~~~~~~~~igD~~~Di~~a~~~---G~~~i~v~~~ 210 (246)
.+...+-+.+..+|++..+...|||.+.+|..+-.. -...+.++.|
T Consensus 21 tNa~~la~~L~~~G~~v~~~~~VgD~~~~I~~~l~~a~~r~D~vI~tGG 69 (255)
T COG1058 21 TNAAFLADELTELGVDLARITTVGDNPDRIVEALREASERADVVITTGG 69 (255)
T ss_pred chHHHHHHHHHhcCceEEEEEecCCCHHHHHHHHHHHHhCCCEEEECCC
Confidence 366777888888999999999999999887544331 2566777666
No 462
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=29.22 E-value=1.8e+02 Score=19.56 Aligned_cols=35 Identities=9% Similarity=0.025 Sum_probs=24.6
Q ss_pred ccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhc
Q 025896 111 SGLDKVKKWIEDRGLKRAAVTNAPRENAELMISKL 145 (246)
Q Consensus 111 ~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~ 145 (246)
+...++.+++++.|+.++.+|..+........+..
T Consensus 43 ~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~ 77 (140)
T cd02971 43 CAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKE 77 (140)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcc
Confidence 33445666666778888888887777677777766
No 463
>PLN02334 ribulose-phosphate 3-epimerase
Probab=29.12 E-value=2.6e+02 Score=21.21 Aligned_cols=97 Identities=23% Similarity=0.151 Sum_probs=53.5
Q ss_pred ccHHHHHHHHHHcCCeEEEEeCC--CHHHHHHHHHhcCCCCcce--EEEecCCCCCCCCChHHHHHHHHHcCC-CCCcEE
Q 025896 111 SGLDKVKKWIEDRGLKRAAVTNA--PRENAELMISKLGLSDFFQ--VVILGDECERAKPFPDPYFKALEMLKV-SKDHTF 185 (246)
Q Consensus 111 ~~~~~~l~~l~~~g~~i~i~s~~--~~~~~~~~l~~~~l~~~f~--~~~~~~~~~~~kp~~~~~~~~~~~~~~-~~~~~~ 185 (246)
+...+.++++++.|..+++..+. +....+..+...+. +++- .+..+. ...+..+..+..+-+-... ..-.++
T Consensus 102 d~~~~~~~~i~~~g~~iGls~~~~t~~~~~~~~~~~~~~-Dyi~~~~v~pg~--~~~~~~~~~~~~i~~~~~~~~~~~I~ 178 (229)
T PLN02334 102 IHLHRLIQQIKSAGMKAGVVLNPGTPVEAVEPVVEKGLV-DMVLVMSVEPGF--GGQSFIPSMMDKVRALRKKYPELDIE 178 (229)
T ss_pred hhHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhccCC-CEEEEEEEecCC--CccccCHHHHHHHHHHHHhCCCCcEE
Confidence 44578889999999999988873 34444444433112 2221 111111 1122233444443332222 112455
Q ss_pred EE-ecChhhhHHHHhcCCCEEEEcCC
Q 025896 186 VF-EDSVSGIKAGVAAGLPVVGLTTR 210 (246)
Q Consensus 186 ~i-gD~~~Di~~a~~~G~~~i~v~~~ 210 (246)
++ |=+..++....++|...+.+.+.
T Consensus 179 a~GGI~~e~i~~l~~aGad~vvvgsa 204 (229)
T PLN02334 179 VDGGVGPSTIDKAAEAGANVIVAGSA 204 (229)
T ss_pred EeCCCCHHHHHHHHHcCCCEEEEChH
Confidence 66 45558999999999998888543
No 464
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=29.02 E-value=3.1e+02 Score=22.17 Aligned_cols=95 Identities=16% Similarity=0.125 Sum_probs=68.5
Q ss_pred cHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHH--HHHHHcC-CCCCcEEEEe
Q 025896 112 GLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDECERAKPFPDPYF--KALEMLK-VSKDHTFVFE 188 (246)
Q Consensus 112 ~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~--~~~~~~~-~~~~~~~~ig 188 (246)
-..+.++.|...|..++|+--......+...+..++.+ ++-+.+.....|....+. -+.+.+| ++.-++.++|
T Consensus 90 tL~DT~~tl~ayg~D~iViRH~~egaa~~~a~~~~~~p----vINaGDG~~qHPTQ~LLDl~TI~~~~G~~~gl~iaivG 165 (316)
T COG0540 90 TLADTIRTLSAYGVDAIVIRHPEEGAARLLAEFSGVNP----VINAGDGSHQHPTQALLDLYTIREEFGRLDGLKIAIVG 165 (316)
T ss_pred cHHHHHHHHHhhCCCEEEEeCccccHHHHHHHhcCCCc----eEECCCCCCCCccHHHHHHHHHHHHhCCcCCcEEEEEc
Confidence 36678888888888898887776667777666665532 666777777777655443 3566666 6778899999
Q ss_pred cCh------hhhHHHHhcCCCEEEEcCC
Q 025896 189 DSV------SGIKAGVAAGLPVVGLTTR 210 (246)
Q Consensus 189 D~~------~Di~~a~~~G~~~i~v~~~ 210 (246)
|-. +.+.+....|....++...
T Consensus 166 DlkhsRva~S~~~~L~~~ga~v~lvsP~ 193 (316)
T COG0540 166 DLKHSRVAHSNIQALKRFGAEVYLVSPE 193 (316)
T ss_pred cccchHHHHHHHHHHHHcCCEEEEECch
Confidence 965 4778888899777777433
No 465
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=28.94 E-value=92 Score=23.81 Aligned_cols=22 Identities=9% Similarity=0.188 Sum_probs=18.7
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCH
Q 025896 113 LDKVKKWIEDRGLKRAAVTNAPR 135 (246)
Q Consensus 113 ~~~~l~~l~~~g~~i~i~s~~~~ 135 (246)
+++++.+|++. +.++|||-+-.
T Consensus 188 IEeLi~eLk~~-yTIviVTHnmq 209 (253)
T COG1117 188 IEELITELKKK-YTIVIVTHNMQ 209 (253)
T ss_pred HHHHHHHHHhc-cEEEEEeCCHH
Confidence 67999999976 99999998843
No 466
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=28.91 E-value=4.1e+02 Score=25.83 Aligned_cols=120 Identities=9% Similarity=0.091 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCeEEEEeCCCH-------------------HHHHHHHHhcCCCCcce----------------------
Q 025896 114 DKVKKWIEDRGLKRAAVTNAPR-------------------ENAELMISKLGLSDFFQ---------------------- 152 (246)
Q Consensus 114 ~~~l~~l~~~g~~i~i~s~~~~-------------------~~~~~~l~~~~l~~~f~---------------------- 152 (246)
..+++.|++.|++++++.+++. ..+..++++.+++..+.
T Consensus 31 ~q~~~aL~e~G~~vi~v~~np~~~~~d~~~ad~~y~ep~~~e~l~~ii~~e~~D~Iip~~gg~~~l~~a~~l~~~g~Le~ 110 (1068)
T PRK12815 31 TQACLALKEEGYQVVLVNPNPATIMTDPAPADTVYFEPLTVEFVKRIIAREKPDALLATLGGQTALNLAVKLHEDGILEQ 110 (1068)
T ss_pred HHHHHHHHHcCCEEEEEeCCcchhhcCcccCCeeEECCCCHHHHHHHHHHhCcCEEEECCCCchHHHHHHHHHhcCHHHH
Q ss_pred ----EEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEEEecChhhhHHHHhcCCCEEEEcCCCChhhhhccCCcEEecCC
Q 025896 153 ----VVILGDECERAKPFPDPYFKALEMLKVSKDHTFVFEDSVSGIKAGVAAGLPVVGLTTRNPEHVLLEANPTFLIKDY 228 (246)
Q Consensus 153 ----~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i~~~ 228 (246)
....+...-...-+...++.+++++|++--....+.+...-...+...|++++.. +..........++++-
T Consensus 111 ~gv~l~g~~~~~i~~~~DK~~~k~~l~~~GIpvp~~~~v~s~ee~~~~~~~igyPvVVK-----P~~g~gG~Gv~iv~~~ 185 (1068)
T PRK12815 111 YGVELLGTNIEAIQKGEDRERFRALMKELGEPVPESEIVTSVEEALAFAEKIGFPIIVR-----PAYTLGGTGGGIAENL 185 (1068)
T ss_pred CCCEEECCCHHHHHHhcCHHHHHHHHHHcCcCCCCceeeCCHHHHHHHHHHcCCCEEEE-----ECcCCCCCceEEECCH
Q ss_pred CChhhHHHHhhh
Q 025896 229 DDPKLWSALEEL 240 (246)
Q Consensus 229 ~el~~~~~l~~~ 240 (246)
.| +...+++.
T Consensus 186 eE--L~~a~~~~ 195 (1068)
T PRK12815 186 EE--LEQLFKQG 195 (1068)
T ss_pred HH--HHHHHHHH
No 467
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=28.85 E-value=2.6e+02 Score=21.13 Aligned_cols=26 Identities=19% Similarity=0.447 Sum_probs=23.5
Q ss_pred EEEecChhhhHHHHhcCCCEEEEcCC
Q 025896 185 FVFEDSVSGIKAGVAAGLPVVGLTTR 210 (246)
Q Consensus 185 ~~igD~~~Di~~a~~~G~~~i~v~~~ 210 (246)
++||.+.+..-.|-..|.+++.+.+.
T Consensus 260 ~~Is~RlH~~I~a~~~g~P~i~i~y~ 285 (286)
T PF04230_consen 260 LVISMRLHGAILALSLGVPVIAISYD 285 (286)
T ss_pred EEEecCCHHHHHHHHcCCCEEEEecC
Confidence 59999999999999999999998653
No 468
>cd08555 PI-PLCc_GDPD_SF Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily. The PI-PLC-like phosphodiesterases superfamily represents the catalytic domains of bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11), glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria, as well as their uncharacterized homologs found in organisms ranging from bacteria and archaea to metazoans, plants, and fungi. PI-PLCs are ubiquitous enzymes hydrolyzing the membrane lipid phosphoinositides to yield two important second messengers, inositol phosphates and diacylglycerol (DAG). GP-GDEs play essential roles in glycerol metabolism and catalyze the hydrolysis of glycerophosph
Probab=28.83 E-value=1.6e+02 Score=21.27 Aligned_cols=35 Identities=17% Similarity=0.120 Sum_probs=27.0
Q ss_pred HHHHHHHHHHcCCeEEEEeCCC-HHHHHHHHHhcCCC
Q 025896 113 LDKVKKWIEDRGLKRAAVTNAP-RENAELMISKLGLS 148 (246)
Q Consensus 113 ~~~~l~~l~~~g~~i~i~s~~~-~~~~~~~l~~~~l~ 148 (246)
..++++++++.|.++.+.|-+. ...+...+ .+|++
T Consensus 138 ~~~~v~~~~~~g~~v~~wtvn~~~~~~~~l~-~~Gvd 173 (179)
T cd08555 138 DTELIASANKLGLLSRIWTVNDNNEIINKFL-NLGVD 173 (179)
T ss_pred CHHHHHHHHHCCCEEEEEeeCChHHHHHHHH-HcCCC
Confidence 3678899999999999999887 66666555 45754
No 469
>PF12076 Wax2_C: WAX2 C-terminal domain; InterPro: IPR021940 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 170 amino acids in length. This domain is found associated with PF04116 from PFAM. This domain has a conserved LEGW sequence motif. This region has similarity to short chain dehydrogenases [].
Probab=28.71 E-value=2.2e+02 Score=20.41 Aligned_cols=53 Identities=11% Similarity=0.103 Sum_probs=28.5
Q ss_pred cEEEEecChhhhHHHHhc-CCCEEEEcCCCChhhhhccCCcEEecCCCChhhHHHHhh
Q 025896 183 HTFVFEDSVSGIKAGVAA-GLPVVGLTTRNPEHVLLEANPTFLIKDYDDPKLWSALEE 239 (246)
Q Consensus 183 ~~~~igD~~~Di~~a~~~-G~~~i~v~~~~~~~~~~~~~~~~~i~~~~el~~~~~l~~ 239 (246)
+++.|||...+-+..++- |-.++-++..- ......|-...+...+.++.-++.
T Consensus 57 K~WlVGd~l~~~EQ~~Ap~Gt~FipfsqfP----~~~~RkDC~Y~~tPAM~~P~~~~n 110 (164)
T PF12076_consen 57 KTWLVGDGLTEEEQKWAPKGTHFIPFSQFP----PKKVRKDCTYHSTPAMKVPKSMEN 110 (164)
T ss_pred eeEEeCCCCCHHHHhcCCCCCEEeeccCCC----cHHHhCCCcccCcccccCChhhhh
Confidence 799999999887776553 54455443221 112223444445554444444433
No 470
>PF07453 NUMOD1: NUMOD1 domain; InterPro: IPR010896 This helix-turn-helix-containing DNA-binding domain is found associated in homing nucleases [].
Probab=28.49 E-value=83 Score=15.77 Aligned_cols=26 Identities=19% Similarity=0.307 Sum_probs=16.6
Q ss_pred ceEEEeCCCccccChhhHHHHHHHHHHHhc
Q 025896 23 EAVLFDVDGTLCDSDPLHHYAFREMLQEIG 52 (246)
Q Consensus 23 k~iifD~DGTL~~~~~~~~~~~~~~~~~~~ 52 (246)
+..++|++|..+..-. ...++.+.+|
T Consensus 2 ~V~~yd~~~~~i~~F~----Si~eAa~~l~ 27 (37)
T PF07453_consen 2 PVYVYDLNTNEIKSFD----SIREAARYLG 27 (37)
T ss_pred eEEEEECCCCeEEEEc----CHHHHHHHhC
Confidence 4678899999875443 3444555553
No 471
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=28.46 E-value=1.8e+02 Score=24.40 Aligned_cols=86 Identities=13% Similarity=0.107 Sum_probs=46.7
Q ss_pred Cccc-HHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEEE
Q 025896 109 PISG-LDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEMLKVSKDHTFVF 187 (246)
Q Consensus 109 ~~~~-~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~i 187 (246)
+.-| ..+.++.+++.|--..|||-+..-.....+..-.-.+++. +-+-+..+++++++ ++-.
T Consensus 159 iH~Gi~~~~~~~~~~~~R~~giVSRGGs~~~~WM~~~~~ENPlye-------------~fD~lLeI~~~yDV----tlSL 221 (423)
T TIGR00190 159 IHAGVLLEYVERLKRSGRITGIVSRGGAILAAWMLHHHKENPLYK-------------NFDYILEIAKEYDV----TLSL 221 (423)
T ss_pred EccchhHHHHHHHHhCCCccCeecCcHHHHHHHHHHcCCcCchHH-------------HHHHHHHHHHHhCe----eeec
Confidence 3344 3667777777666667777665544444443321112111 11234567777777 6677
Q ss_pred ecChh--------h-------------hHHHHhcCCCEEEEcCCC
Q 025896 188 EDSVS--------G-------------IKAGVAAGLPVVGLTTRN 211 (246)
Q Consensus 188 gD~~~--------D-------------i~~a~~~G~~~i~v~~~~ 211 (246)
||+.. | .+-|+++|+++..=..|+
T Consensus 222 GDglRPG~i~DA~D~aQi~El~~lgeL~~rA~e~gVQvMVEGPGH 266 (423)
T TIGR00190 222 GDGLRPGCIADATDRAQISELITLGELVERAREADVQCMVEGPGH 266 (423)
T ss_pred cCCcCCCccccCCcHHHHHHHHHHHHHHHHHHHcCCeEEEECCCC
Confidence 77651 1 256788998744433334
No 472
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=28.42 E-value=2.5e+02 Score=20.80 Aligned_cols=83 Identities=7% Similarity=-0.039 Sum_probs=39.4
Q ss_pred HHHHHHcCCeEEEE-eCCCHHHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEEEecChhhhH
Q 025896 117 KKWIEDRGLKRAAV-TNAPRENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEMLKVSKDHTFVFEDSVSGIK 195 (246)
Q Consensus 117 l~~l~~~g~~i~i~-s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~igD~~~Di~ 195 (246)
-..++.+|+++.-+ ++.+.+.+-..+...+ .|.+..|-......+...-+...+++.+..+.-.++||=..-.-.
T Consensus 105 ~~~l~~~G~~vi~LG~~vp~e~~v~~~~~~~----pd~v~lS~~~~~~~~~~~~~i~~l~~~~~~~~v~i~vGG~~~~~~ 180 (197)
T TIGR02370 105 VTMLRANGFDVIDLGRDVPIDTVVEKVKKEK----PLMLTGSALMTTTMYGQKDINDKLKEEGYRDSVKFMVGGAPVTQD 180 (197)
T ss_pred HHHHHhCCcEEEECCCCCCHHHHHHHHHHcC----CCEEEEccccccCHHHHHHHHHHHHHcCCCCCCEEEEEChhcCHH
Confidence 34456677776633 3334444444444433 344443433333333322333444444554444566666663334
Q ss_pred HHHhcCCC
Q 025896 196 AGVAAGLP 203 (246)
Q Consensus 196 ~a~~~G~~ 203 (246)
-++..|..
T Consensus 181 ~~~~~gad 188 (197)
T TIGR02370 181 WADKIGAD 188 (197)
T ss_pred HHHHhCCc
Confidence 56666654
No 473
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.40 E-value=1.4e+02 Score=25.84 Aligned_cols=113 Identities=12% Similarity=0.091 Sum_probs=61.1
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCHH----HHHHHHHhcCCCCcceEEEecCCCCCCCC---ChHHHHHHHHHcCCCCC---
Q 025896 113 LDKVKKWIEDRGLKRAAVTNAPRE----NAELMISKLGLSDFFQVVILGDECERAKP---FPDPYFKALEMLKVSKD--- 182 (246)
Q Consensus 113 ~~~~l~~l~~~g~~i~i~s~~~~~----~~~~~l~~~~l~~~f~~~~~~~~~~~~kp---~~~~~~~~~~~~~~~~~--- 182 (246)
+.+.+++.+++|+.++++-...+. .+..-|.++--..--|.|+...+.-.+.- +..-|.+.+.... .|.
T Consensus 455 ak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~fn~al~~~~-~~r~id 533 (587)
T KOG0781|consen 455 AKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKFNRALADHS-TPRLID 533 (587)
T ss_pred HHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHHHHHHHhcCC-Cccccc
Confidence 578889999999999988655432 23333333311122455554433222221 1223444444433 222
Q ss_pred -----cEEEEecCh-hhhHHHHhcCCCEEEEcCCCChhhhhccCCcEEec
Q 025896 183 -----HTFVFEDSV-SGIKAGVAAGLPVVGLTTRNPEHVLLEANPTFLIK 226 (246)
Q Consensus 183 -----~~~~igD~~-~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i~ 226 (246)
.+=-|||.. .-+.|.-..|.+.++|.-|....++......+++.
T Consensus 534 ~~~ltk~dtv~d~vg~~~~m~y~~~~pi~fvg~gqtysdlr~l~v~~vv~ 583 (587)
T KOG0781|consen 534 GILLTKFDTVDDKVGAAVSMVYITGKPILFVGVGQTYSDLRKLNVKAVVA 583 (587)
T ss_pred eEEEEeccchhhHHHHHhhheeecCCceEEEecCcchhhhhhccHHHHHH
Confidence 222355655 55677778899999987776555555544444443
No 474
>cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.
Probab=28.36 E-value=1.4e+02 Score=22.55 Aligned_cols=34 Identities=21% Similarity=0.317 Sum_probs=26.1
Q ss_pred HHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCC
Q 025896 114 DKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLS 148 (246)
Q Consensus 114 ~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~ 148 (246)
.++++.+|+.|.++.+.|-++...++..++ .|++
T Consensus 190 ~~~i~~~~~~g~~v~~Wtvn~~~~~~~~~~-~GVd 223 (230)
T cd08563 190 EEVVEELKKRGIPVRLWTVNEEEDMKRLKD-LGVD 223 (230)
T ss_pred HHHHHHHHHCCCEEEEEecCCHHHHHHHHH-CCCC
Confidence 578899999999999999877666666555 4654
No 475
>COG0752 GlyQ Glycyl-tRNA synthetase, alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=28.36 E-value=78 Score=24.38 Aligned_cols=44 Identities=30% Similarity=0.355 Sum_probs=33.3
Q ss_pred CCCChH----HHHHHHHHcCCCC--CcEEEEecCh-hhhHHHHhcCCCEEEE
Q 025896 163 AKPFPD----PYFKALEMLKVSK--DHTFVFEDSV-SGIKAGVAAGLPVVGL 207 (246)
Q Consensus 163 ~kp~~~----~~~~~~~~~~~~~--~~~~~igD~~-~Di~~a~~~G~~~i~v 207 (246)
-||.|+ .|..-++.+|++| .++=||.|.. |---.|...|+. +|.
T Consensus 85 lKPsP~NiQeLYL~SL~~lGid~~~HDIRFVEDnWE~PTlGawGlGWE-VWl 135 (298)
T COG0752 85 IKPSPDNIQELYLGSLEALGIDPLEHDIRFVEDNWENPTLGAWGLGWE-VWL 135 (298)
T ss_pred ecCCCccHHHHHHHHHHHcCCChhhcceeeeccCCCCCccccccccee-EEE
Confidence 356654 5667789999988 5688999999 777788888875 555
No 476
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=28.36 E-value=3.3e+02 Score=22.29 Aligned_cols=27 Identities=11% Similarity=0.118 Sum_probs=22.4
Q ss_pred cccHHHHHHHHHHcCCeEEEEeCCCHH
Q 025896 110 ISGLDKVKKWIEDRGLKRAAVTNAPRE 136 (246)
Q Consensus 110 ~~~~~~~l~~l~~~g~~i~i~s~~~~~ 136 (246)
.|-+..+.+.|++.|++++++|-+...
T Consensus 63 TP~vi~la~~l~~rG~~~gvvSRGYgg 89 (336)
T COG1663 63 TPVVIWLAEALQARGVRVGVVSRGYGG 89 (336)
T ss_pred CHHHHHHHHHHHhcCCeeEEEecCcCC
Confidence 366889999999999999999987533
No 477
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=28.35 E-value=85 Score=26.48 Aligned_cols=8 Identities=13% Similarity=0.007 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q 025896 113 LDKVKKWI 120 (246)
Q Consensus 113 ~~~~l~~l 120 (246)
..+.|.+|
T Consensus 84 ~~~vl~~L 91 (429)
T TIGR02765 84 PEDVLPEL 91 (429)
T ss_pred HHHHHHHH
Confidence 34444443
No 478
>PLN02257 phosphoribosylamine--glycine ligase
Probab=28.34 E-value=3.7e+02 Score=22.86 Aligned_cols=109 Identities=12% Similarity=0.053 Sum_probs=58.9
Q ss_pred ccHHHHHHHHHHcCCeEEEEeCCCHH--HHHHHHHhcCCCCcceEEEecC-CCCCCCCChHHHHHHHHHcCCCCCcEEEE
Q 025896 111 SGLDKVKKWIEDRGLKRAAVTNAPRE--NAELMISKLGLSDFFQVVILGD-ECERAKPFPDPYFKALEMLKVSKDHTFVF 187 (246)
Q Consensus 111 ~~~~~~l~~l~~~g~~i~i~s~~~~~--~~~~~l~~~~l~~~f~~~~~~~-~~~~~kp~~~~~~~~~~~~~~~~~~~~~i 187 (246)
.+...+++.+++.++.+++++....- .+...++..|+. ++... ....-.-+....+.+++++|++--....+
T Consensus 49 ~d~~~l~~~a~~~~id~vvvg~E~~lv~~~~d~l~~~Gi~-----~~Gps~~aa~l~~dK~~~K~~l~~~GIptp~~~~~ 123 (434)
T PLN02257 49 SDSAAVISFCRKWGVGLVVVGPEAPLVAGLADDLVKAGIP-----TFGPSAEAAALEGSKNFMKDLCDKYKIPTAKYETF 123 (434)
T ss_pred CCHHHHHHHHHHcCCCEEEECCchHHHHHHHHHHHHCCCC-----EECChHHHHHHHcCHHHHHHHHHHcCCCCCCeEEe
Confidence 34556777788888877776543322 233344444543 11111 00001113345678899999976666666
Q ss_pred ecChhhh-HHHHhcCCCEEEEcCCCChhhhhccCCcEEecCCCC
Q 025896 188 EDSVSGI-KAGVAAGLPVVGLTTRNPEHVLLEANPTFLIKDYDD 230 (246)
Q Consensus 188 gD~~~Di-~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i~~~~e 230 (246)
. +..++ ..+...|.+.+.-..+. ......+++++..|
T Consensus 124 ~-~~~e~~~~~~~~g~PvVVKp~~~-----~~GkGV~iv~~~~e 161 (434)
T PLN02257 124 T-DPAAAKKYIKEQGAPIVVKADGL-----AAGKGVVVAMTLEE 161 (434)
T ss_pred C-CHHHHHHHHHHcCCCEEEEcCCC-----CCCCCEEEECCHHH
Confidence 4 34444 34556788876664432 11234567777776
No 479
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=28.27 E-value=3.1e+02 Score=21.84 Aligned_cols=96 Identities=11% Similarity=0.060 Sum_probs=59.3
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCCC-CCCC---hHHHHHHHHHcCCCCCcEEEE-
Q 025896 113 LDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDECER-AKPF---PDPYFKALEMLKVSKDHTFVF- 187 (246)
Q Consensus 113 ~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~-~kp~---~~~~~~~~~~~~~~~~~~~~i- 187 (246)
..++|+..++.||-+....-.+.+.++.+++...-.. -..++....... ..+. ......++++..++- +++.
T Consensus 4 ~k~ll~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~-sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPV--alHLD 80 (282)
T TIGR01858 4 TKYMLQDAQAGGYAVPAFNIHNLETIQAVVETAAEMR-SPVILAGTPGTFKHAGTEYIVALCSAASTTYNMPL--ALHLD 80 (282)
T ss_pred HHHHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHHhC-CCEEEEeCccHHhhCCHHHHHHHHHHHHHHCCCCE--EEECC
Confidence 5678888999999999888888888888776542211 122222111111 1111 123445666666632 4555
Q ss_pred -ecChhhhHHHHhcCCCEEEEcCCC
Q 025896 188 -EDSVSGIKAGVAAGLPVVGLTTRN 211 (246)
Q Consensus 188 -gD~~~Di~~a~~~G~~~i~v~~~~ 211 (246)
|.+..++..|-.+|+.+++++...
T Consensus 81 Hg~~~e~i~~ai~~GFtSVM~DgS~ 105 (282)
T TIGR01858 81 HHESLDDIRQKVHAGVRSAMIDGSH 105 (282)
T ss_pred CCCCHHHHHHHHHcCCCEEeecCCC
Confidence 344578888899999999998774
No 480
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=28.18 E-value=3.1e+02 Score=27.14 Aligned_cols=87 Identities=13% Similarity=0.122 Sum_probs=55.3
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCH--HHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEEEecC
Q 025896 113 LDKVKKWIEDRGLKRAAVTNAPR--ENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEMLKVSKDHTFVFEDS 190 (246)
Q Consensus 113 ~~~~l~~l~~~g~~i~i~s~~~~--~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~igD~ 190 (246)
..-+|++|+..|.++.|+|-... ..++.+|..+|.. ||. + + +.. .-+-=+.++++++.++.-.+||=.+
T Consensus 1265 LAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgyl-Y~R--L--D--g~t--~vEqRQaLmerFNaD~RIfcfILST 1335 (1958)
T KOG0391|consen 1265 LAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYL-YVR--L--D--GNT--SVEQRQALMERFNADRRIFCFILST 1335 (1958)
T ss_pred HHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceE-EEE--e--c--CCc--cHHHHHHHHHHhcCCCceEEEEEec
Confidence 34567899999999999987743 3355555555542 111 1 1 111 2233456788888888878888777
Q ss_pred hhhhHHHHhcCCCEEEEc
Q 025896 191 VSGIKAGVAAGLPVVGLT 208 (246)
Q Consensus 191 ~~Di~~a~~~G~~~i~v~ 208 (246)
.+.=....-.|..++.+.
T Consensus 1336 rSggvGiNLtgADTVvFY 1353 (1958)
T KOG0391|consen 1336 RSGGVGINLTGADTVVFY 1353 (1958)
T ss_pred cCCccccccccCceEEEe
Confidence 766666677777755444
No 481
>PF13686 DrsE_2: DsrE/DsrF/DrsH-like family; PDB: 2QS7_C 3PNX_C.
Probab=28.17 E-value=64 Score=22.72 Aligned_cols=24 Identities=17% Similarity=0.302 Sum_probs=19.1
Q ss_pred cccHHHHHHHHHHcCCeEEEEeCC
Q 025896 110 ISGLDKVKKWIEDRGLKRAAVTNA 133 (246)
Q Consensus 110 ~~~~~~~l~~l~~~g~~i~i~s~~ 133 (246)
.|...++++.+++.|++++.++-.
T Consensus 90 v~sl~eLl~~a~e~GVk~~AC~ms 113 (148)
T PF13686_consen 90 VPSLEELLEMAKELGVKFYACSMS 113 (148)
T ss_dssp ---HHHHHHHHHHCCEEEEEEHHH
T ss_pred CCCHHHHHHHHHHCCCEEEEehhh
Confidence 356889999999999999999765
No 482
>cd08574 GDPD_GDE_2_3_6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase domain-containing protein subtype 5 (GDE2), subtype 2 (GDE3), subtype 1 (GDE6), and their eukaryotic homologs. Mammalian GDE2, GDE3, and GDE6 show very high sequence similarity to each other and have been classified into the same family. Although they are all transmembrane proteins, based on different pattern of tissue distribution, these enzymes might display diverse cellular functions. Mammalian GDE2 is primarily expressed in mature neurons. It selectively hydrolyzes glycerophosphocholine (GPC) and mainly functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differentiation in the spinal cord. Mammalian GDE3 is specifically expressed in bo
Probab=27.98 E-value=1.4e+02 Score=23.11 Aligned_cols=34 Identities=6% Similarity=-0.103 Sum_probs=27.1
Q ss_pred HHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCC
Q 025896 114 DKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLS 148 (246)
Q Consensus 114 ~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~ 148 (246)
.++++.+|+.|+++.+.|-++...+...+ .+|++
T Consensus 213 ~~~v~~~~~~g~~v~~WTVn~~~~~~~l~-~~GVd 246 (252)
T cd08574 213 AQEIREYSKANISVNLYVVNEPWLYSLLW-CSGVQ 246 (252)
T ss_pred HHHHHHHHHCCCEEEEEccCCHHHHHHHH-HcCCC
Confidence 57899999999999999999877666555 45754
No 483
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=27.98 E-value=1.8e+02 Score=19.68 Aligned_cols=37 Identities=22% Similarity=0.149 Sum_probs=24.9
Q ss_pred cHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCC
Q 025896 112 GLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLS 148 (246)
Q Consensus 112 ~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~ 148 (246)
...++.+++++.|+.++.++...........+..++.
T Consensus 45 ~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~~~ 81 (149)
T cd02970 45 ALSKLLPELDALGVELVAVGPESPEKLEAFDKGKFLP 81 (149)
T ss_pred HHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcCCC
Confidence 3445666677788998888877766665556665553
No 484
>PRK13938 phosphoheptose isomerase; Provisional
Probab=27.98 E-value=88 Score=23.23 Aligned_cols=27 Identities=15% Similarity=0.117 Sum_probs=22.8
Q ss_pred cccHHHHHHHHHHcCCeEEEEeCCCHH
Q 025896 110 ISGLDKVKKWIEDRGLKRAAVTNAPRE 136 (246)
Q Consensus 110 ~~~~~~~l~~l~~~g~~i~i~s~~~~~ 136 (246)
.+.+.+.++.++++|.+++.+|+....
T Consensus 126 t~~vi~a~~~Ak~~G~~vI~iT~~~~s 152 (196)
T PRK13938 126 SMSVLRAAKTARELGVTVVAMTGESGG 152 (196)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 466889999999999999999987543
No 485
>COG4018 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.73 E-value=60 Score=26.27 Aligned_cols=41 Identities=12% Similarity=0.044 Sum_probs=29.7
Q ss_pred HHHHHHHcCCCCCcEEEEecChhhh----HHHHhcCCCEEEEcCC
Q 025896 170 YFKALEMLKVSKDHTFVFEDSVSGI----KAGVAAGLPVVGLTTR 210 (246)
Q Consensus 170 ~~~~~~~~~~~~~~~~~igD~~~Di----~~a~~~G~~~i~v~~~ 210 (246)
.....++.|-..+-+++|||++.|+ +++-+.+..+..+..+
T Consensus 211 VaEtArk~GkGveaI~hvgDGyDdli~G~kA~ve~~vDvfvvEGg 255 (505)
T COG4018 211 VAETARKSGKGVEAILHVGDGYDDLIDGLKAAVEEVVDVFVVEGG 255 (505)
T ss_pred HHHHHHHhCCCceeEEEecCCcHHHHHHHHHHHHhcCcEEEEcCC
Confidence 3356677788889999999999876 4555556666666655
No 486
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=27.46 E-value=79 Score=23.82 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=23.4
Q ss_pred cccHHHHHHHHHHcCCeEEEEeCCCH
Q 025896 110 ISGLDKVKKWIEDRGLKRAAVTNAPR 135 (246)
Q Consensus 110 ~~~~~~~l~~l~~~g~~i~i~s~~~~ 135 (246)
.+++.++++.+++.|+++.+=||++.
T Consensus 85 ~~~l~~Ll~~l~~~g~~~~lETngti 110 (212)
T COG0602 85 QPNLLELLELLKRLGFRIALETNGTI 110 (212)
T ss_pred cccHHHHHHHHHhCCceEEecCCCCc
Confidence 56899999999999999999998854
No 487
>PLN02588 glycerol-3-phosphate acyltransferase
Probab=27.40 E-value=34 Score=29.46 Aligned_cols=18 Identities=33% Similarity=0.683 Sum_probs=15.1
Q ss_pred cceEEEeCCCccccChhh
Q 025896 22 LEAVLFDVDGTLCDSDPL 39 (246)
Q Consensus 22 ~k~iifD~DGTL~~~~~~ 39 (246)
-+.+++|+||||+.+.+.
T Consensus 50 ~~t~v~d~~g~Ll~s~s~ 67 (525)
T PLN02588 50 NHTLIFNVEGALLKSNSL 67 (525)
T ss_pred cceEEEecccceeccCCC
Confidence 567999999999987753
No 488
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=27.38 E-value=81 Score=25.42 Aligned_cols=24 Identities=0% Similarity=-0.036 Sum_probs=20.5
Q ss_pred CCcccHHHHHHHHHHcCCeEEEEe
Q 025896 108 KPISGLDKVKKWIEDRGLKRAAVT 131 (246)
Q Consensus 108 ~~~~~~~~~l~~l~~~g~~i~i~s 131 (246)
.-||+..+++++|+++|+++++..
T Consensus 63 ~~FPdp~~mi~~L~~~G~kv~~~i 86 (319)
T cd06591 63 ERFPDPKAMVRELHEMNAELMISI 86 (319)
T ss_pred hhCCCHHHHHHHHHHCCCEEEEEe
Confidence 457889999999999999988754
No 489
>TIGR02845 spore_V_AD stage V sporulation protein AD. Bacillus and Clostridium species contain about 10 % dipicolinic acid (pyridine-2,6-dicarboxylic acid) by weight. This protein family, SpoVAD, belongs to the spoVA operon that is suggested to act in the transport of dipicolinic acid (DPA) from the mother cell, where DPA is synthesized, to the forespore, a process essential to sporulation. Members of this protein family are found, so far, in exactly those species believed capable of endospore formation.
Probab=27.36 E-value=2.6e+02 Score=22.75 Aligned_cols=65 Identities=25% Similarity=0.300 Sum_probs=41.1
Q ss_pred CCCCcceEEEecCCCCCCCCC-------hHHHHHHHHHcCCCCC--cEEEEecChhhh----HHHHhcCCCEEEEcCC
Q 025896 146 GLSDFFQVVILGDECERAKPF-------PDPYFKALEMLKVSKD--HTFVFEDSVSGI----KAGVAAGLPVVGLTTR 210 (246)
Q Consensus 146 ~l~~~f~~~~~~~~~~~~kp~-------~~~~~~~~~~~~~~~~--~~~~igD~~~Di----~~a~~~G~~~i~v~~~ 210 (246)
.+.++||.++.-...+...+. .++.++++++.|++++ +.+++||..+-. ..++..|++..-+...
T Consensus 27 pl~~~fd~~~~d~~~g~ks~EkAe~eLa~eAa~~ALekAGL~~~DID~IIvGdl~~Q~~~As~vA~~LGIP~fdV~~A 104 (327)
T TIGR02845 27 PLGDYFDKIYDDLYCGEDSWEKAERKLMEDAVNLALKKANLKKDDVDFFLAGDLLNQIITANFVARDLGIPFLGLYGA 104 (327)
T ss_pred CChhhCCEEEeccccCCcCcchhHHHHHHHHHHHHHHHcCCCHHHCCEEEEeCCCCcccHHHHHHHHhCCCEEEEecc
Confidence 566889988755443333221 2346677888899887 578889865322 3557778877666543
No 490
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=27.31 E-value=82 Score=25.41 Aligned_cols=25 Identities=24% Similarity=0.443 Sum_probs=21.1
Q ss_pred CCcccHHHHHHHHHHcCCeEEEEeC
Q 025896 108 KPISGLDKVKKWIEDRGLKRAAVTN 132 (246)
Q Consensus 108 ~~~~~~~~~l~~l~~~g~~i~i~s~ 132 (246)
.-+|+..+++++||+.|+++++...
T Consensus 68 ~~FPdp~~mi~~Lh~~G~~~~~~i~ 92 (317)
T cd06594 68 ERYPGLDELIEELKARGIRVLTYIN 92 (317)
T ss_pred hhCCCHHHHHHHHHHCCCEEEEEec
Confidence 4578899999999999999887644
No 491
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=27.10 E-value=1.2e+02 Score=24.26 Aligned_cols=121 Identities=17% Similarity=0.083 Sum_probs=58.2
Q ss_pred CCCcccHHHHHHHHHHc-CCe--EEEEeCCCH-HHHHHHHHhcCCCCcceEEEecCCC-CCCCCChHHHHHHHHHcCCCC
Q 025896 107 LKPISGLDKVKKWIEDR-GLK--RAAVTNAPR-ENAELMISKLGLSDFFQVVILGDEC-ERAKPFPDPYFKALEMLKVSK 181 (246)
Q Consensus 107 ~~~~~~~~~~l~~l~~~-g~~--i~i~s~~~~-~~~~~~l~~~~l~~~f~~~~~~~~~-~~~kp~~~~~~~~~~~~~~~~ 181 (246)
..-.+|+..+|+.+.+. |.+ +.|.++... .......+ .+..+|+.++..... ..-..+|..| ..++++|++.
T Consensus 53 gphd~gaiafLrd~Aekhglkg~LLva~GDgev~lvSq~re--eLSa~f~v~lp~w~~l~wlceKPllY-~ra~elgl~~ 129 (415)
T COG3919 53 GPHDEGAIAFLRDFAEKHGLKGYLLVACGDGEVLLVSQYRE--ELSAFFEVPLPDWALLRWLCEKPLLY-NRAEELGLPY 129 (415)
T ss_pred CCCcccHHHHHHHHHhhcCcCceEEEecCCceeeehHhhHH--HHHHHhcCCCCcHHHHHHHhhCcHHH-HHHHHhCCCC
Confidence 34456788888887553 332 222333221 11111112 133345544322111 1111233344 5677889988
Q ss_pred CcEEEEecChhhhHHHHhcCCCEEEEcCCCChhhhhccCCcEEecCCCChh
Q 025896 182 DHTFVFEDSVSGIKAGVAAGLPVVGLTTRNPEHVLLEANPTFLIKDYDDPK 232 (246)
Q Consensus 182 ~~~~~igD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~i~~~~el~ 232 (246)
-.++.|- |..|..... .-++.|+-..-..........-.+.+.|..|+.
T Consensus 130 P~Ty~v~-S~~d~~~~e-l~FPvILKP~mgg~~~~~araKa~~a~d~ee~k 178 (415)
T COG3919 130 PKTYLVN-SEIDTLVDE-LTFPVILKPGMGGSVHFEARAKAFTAADNEEMK 178 (415)
T ss_pred cceEEec-chhhhhhhh-eeeeEEecCCCCCcceeehhhheeeccCHHHHH
Confidence 8888886 777776644 455655544322211112222335666777644
No 492
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=27.02 E-value=1.5e+02 Score=22.73 Aligned_cols=34 Identities=15% Similarity=0.166 Sum_probs=25.7
Q ss_pred HHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCC
Q 025896 114 DKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLS 148 (246)
Q Consensus 114 ~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~ 148 (246)
.++++.+|+.|+++.+.|-++...++.. ..+|++
T Consensus 199 ~~~v~~~~~~g~~v~~WTvn~~~~~~~l-~~~GVd 232 (249)
T PRK09454 199 EARVAALKAAGLRILVYTVNDPARAREL-LRWGVD 232 (249)
T ss_pred HHHHHHHHHCCCEEEEEeCCCHHHHHHH-HHcCCC
Confidence 5788999999999999998776666544 444653
No 493
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=26.82 E-value=1.9e+02 Score=24.34 Aligned_cols=85 Identities=16% Similarity=0.184 Sum_probs=45.5
Q ss_pred ccc-HHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCCCCCCChHHHHHHHHHcCCCCCcEEEEe
Q 025896 110 ISG-LDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDECERAKPFPDPYFKALEMLKVSKDHTFVFE 188 (246)
Q Consensus 110 ~~~-~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~ig 188 (246)
.-| ..+.++.+++.+--..|||-+..-.....+..-.-.+++. +-+-+..+++++++ ++-.|
T Consensus 163 HcGi~~~~~~~~~~~~R~~giVSRGGs~~~~WM~~n~~ENPlye-------------~fD~lLeI~~~yDV----tlSLG 225 (431)
T PRK13352 163 HCGVTRETLERLKKSGRIMGIVSRGGSFLAAWMLHNNKENPLYE-------------HFDYLLEILKEYDV----TLSLG 225 (431)
T ss_pred ccchhHHHHHHHHhcCCccCeecCCHHHHHHHHHHcCCcCchHH-------------HHHHHHHHHHHhCe----eeecc
Confidence 344 3566777777666667777665544444443221112111 11234566777776 66777
Q ss_pred cChh-----h----------------hHHHHhcCCCEEEEcCCC
Q 025896 189 DSVS-----G----------------IKAGVAAGLPVVGLTTRN 211 (246)
Q Consensus 189 D~~~-----D----------------i~~a~~~G~~~i~v~~~~ 211 (246)
|+.. | .+-|+++|+++..=..|+
T Consensus 226 DglRPG~i~Da~D~aQi~El~~lgeL~~RA~e~gVQvMVEGPGH 269 (431)
T PRK13352 226 DGLRPGCIADATDRAQIQELITLGELVKRAREAGVQVMVEGPGH 269 (431)
T ss_pred CCcCCCccccCCcHHHHHHHHHHHHHHHHHHHcCCeEEEECCCC
Confidence 7651 1 256778898744433334
No 494
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.58 E-value=4e+02 Score=22.59 Aligned_cols=44 Identities=20% Similarity=0.263 Sum_probs=30.1
Q ss_pred ceEEEecCCCCCCCCChHHHHHHHHHc-CCCCCcEEEEecChhhhH
Q 025896 151 FQVVILGDECERAKPFPDPYFKALEML-KVSKDHTFVFEDSVSGIK 195 (246)
Q Consensus 151 f~~~~~~~~~~~~kp~~~~~~~~~~~~-~~~~~~~~~igD~~~Di~ 195 (246)
||.|+ .+..+..+-....|....+-- -++|.+++||=|+--.-.
T Consensus 184 fdvII-vDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQa 228 (483)
T KOG0780|consen 184 FDVII-VDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQA 228 (483)
T ss_pred CcEEE-EeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHh
Confidence 56444 455566777777777666644 468999999988875443
No 495
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=26.53 E-value=1.8e+02 Score=22.01 Aligned_cols=37 Identities=16% Similarity=0.120 Sum_probs=26.3
Q ss_pred CCccc-HHHHHHHHHHcCCeEEEEeCCC----HHHHHHHHHh
Q 025896 108 KPISG-LDKVKKWIEDRGLKRAAVTNAP----RENAELMISK 144 (246)
Q Consensus 108 ~~~~~-~~~~l~~l~~~g~~i~i~s~~~----~~~~~~~l~~ 144 (246)
.+.++ +.++++.+++.|+++.+.||+. .......++.
T Consensus 77 ll~~~~~~~li~~~~~~g~~~~i~TNG~~~~~~~~~~~ll~~ 118 (235)
T TIGR02493 77 LLQPEFLSELFKACKELGIHTCLDTSGFLGGCTEAADELLEY 118 (235)
T ss_pred ccCHHHHHHHHHHHHHCCCCEEEEcCCCCCccHHHHHHHHHh
Confidence 34566 4589999999999999999993 3344444443
No 496
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=26.48 E-value=1.3e+02 Score=23.90 Aligned_cols=96 Identities=17% Similarity=0.127 Sum_probs=54.0
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecC--CCCC--CCCChHHHHHHHHHcCCCCCcEEEE-
Q 025896 113 LDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGD--ECER--AKPFPDPYFKALEMLKVSKDHTFVF- 187 (246)
Q Consensus 113 ~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~--~~~~--~kp~~~~~~~~~~~~~~~~~~~~~i- 187 (246)
+.++|+..++.||-+....-.+...++.+++...-.. -..++-.. .... .+.-......+.++.+++- +++.
T Consensus 5 ~~~ll~~A~~~~yAV~AfN~~n~e~~~avi~AAe~~~-sPvIlq~~~~~~~~~~~~~~~~~~~~~a~~~~vPV--alHLD 81 (287)
T PF01116_consen 5 MKELLKKAKEGGYAVPAFNVYNLETARAVIEAAEELN-SPVILQISPSEVKYMGLEYLAAMVKAAAEEASVPV--ALHLD 81 (287)
T ss_dssp HHHHHHHHHHHT-BEEEEE-SSHHHHHHHHHHHHHTT-S-EEEEEEHHHHHHHHHHHHHHHHHHHHHHSTSEE--EEEEE
T ss_pred HHHHHHHHHHCCCeEEEEeeCCHHHHHHHHHHHHHhC-CCEEEEcchhhhhhhhHHHHHHHHHHHHHHcCCCE--Eeecc
Confidence 5678888888888888888887777777775431110 11111110 0000 0111224555666666543 5555
Q ss_pred -ecChhhhHHHHhcCCCEEEEcCCC
Q 025896 188 -EDSVSGIKAGVAAGLPVVGLTTRN 211 (246)
Q Consensus 188 -gD~~~Di~~a~~~G~~~i~v~~~~ 211 (246)
|.+..++..|-.+|+.+++++...
T Consensus 82 H~~~~e~i~~ai~~GftSVM~DgS~ 106 (287)
T PF01116_consen 82 HGKDFEDIKRAIDAGFTSVMIDGSA 106 (287)
T ss_dssp EE-SHHHHHHHHHHTSSEEEEE-TT
T ss_pred cCCCHHHHHHHHHhCcccccccCCc
Confidence 344578888888999999998764
No 497
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=26.42 E-value=87 Score=25.23 Aligned_cols=26 Identities=12% Similarity=0.129 Sum_probs=21.7
Q ss_pred CCCcccHHHHHHHHHHcCCeEEEEeC
Q 025896 107 LKPISGLDKVKKWIEDRGLKRAAVTN 132 (246)
Q Consensus 107 ~~~~~~~~~~l~~l~~~g~~i~i~s~ 132 (246)
..-||+..+++++||++|+++++..+
T Consensus 69 ~~~FPdp~~mi~~L~~~g~k~~~~i~ 94 (317)
T cd06599 69 KDRFPDPAAFVAKFHERGIRLAPNIK 94 (317)
T ss_pred cccCCCHHHHHHHHHHCCCEEEEEeC
Confidence 35678999999999999999987544
No 498
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=26.29 E-value=1.6e+02 Score=22.65 Aligned_cols=14 Identities=7% Similarity=0.204 Sum_probs=6.1
Q ss_pred HHHHHHHHcCCeEE
Q 025896 115 KVKKWIEDRGLKRA 128 (246)
Q Consensus 115 ~~l~~l~~~g~~i~ 128 (246)
+++.+|++.|+.|+
T Consensus 200 ~iI~~l~~~g~~Vv 213 (236)
T PF12017_consen 200 NIIEKLHEIGYNVV 213 (236)
T ss_pred HHHHHHHHCCCEEE
Confidence 33444444444443
No 499
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=26.01 E-value=3.4e+02 Score=21.64 Aligned_cols=99 Identities=11% Similarity=0.025 Sum_probs=58.5
Q ss_pred cHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCCCCcceEEEecCCCCCCC-CChH----HHHHHHHHcCCCCCcEEE
Q 025896 112 GLDKVKKWIEDRGLKRAAVTNAPRENAELMISKLGLSDFFQVVILGDECERAK-PFPD----PYFKALEMLKVSKDHTFV 186 (246)
Q Consensus 112 ~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~k-p~~~----~~~~~~~~~~~~~~~~~~ 186 (246)
...++|+..+++||-+....-.+.+.++.+++...-.. -..++........- ...+ ....+.++.+.+--=+++
T Consensus 5 ~~k~iL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~-sPvIlq~~~~~~~~~~g~~~~~~~~~~~a~~~~~~VPV~lH 83 (288)
T TIGR00167 5 DVKELLQDAKEEGYAIPAFNINNLETINAVLEAAAEEK-SPVIIQFSNGAAKYIAGLGAISAMVKAMSEAYPYGVPVALH 83 (288)
T ss_pred cHHHHHHHHHHCCceEEEEEECCHHHHHHHHHHHHHHC-CCEEEECCcchhhccCCHHHHHHHHHHHHHhccCCCcEEEE
Confidence 36788999999999999888888888887776542111 12222221111111 1222 333445555222222455
Q ss_pred Eec--ChhhhHHHHhcCCCEEEEcCCC
Q 025896 187 FED--SVSGIKAGVAAGLPVVGLTTRN 211 (246)
Q Consensus 187 igD--~~~Di~~a~~~G~~~i~v~~~~ 211 (246)
.+- +..++..|..+|+.+++++...
T Consensus 84 LDHg~~~e~i~~ai~~GftSVMiDgS~ 110 (288)
T TIGR00167 84 LDHGASEEDCAQAVKAGFSSVMIDGSH 110 (288)
T ss_pred CCCCCCHHHHHHHHHcCCCEEEecCCC
Confidence 533 3467788888999999998774
No 500
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=25.99 E-value=89 Score=25.51 Aligned_cols=24 Identities=8% Similarity=0.004 Sum_probs=20.5
Q ss_pred CcccHHHHHHHHHHcCCeEEEEeC
Q 025896 109 PISGLDKVKKWIEDRGLKRAAVTN 132 (246)
Q Consensus 109 ~~~~~~~~l~~l~~~g~~i~i~s~ 132 (246)
-+|+..+++++||+.|+++++..+
T Consensus 83 ~FPdp~~mi~~Lh~~G~kv~l~v~ 106 (340)
T cd06597 83 RWPNPKGMIDELHEQGVKVLLWQI 106 (340)
T ss_pred cCCCHHHHHHHHHHCCCEEEEEec
Confidence 478999999999999999976544
Done!