Query 025897
Match_columns 246
No_of_seqs 111 out of 1089
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 10:48:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025897.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025897hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03750 proteasome_alpha_type_ 100.0 6.6E-62 1.4E-66 410.2 29.4 226 9-239 1-226 (227)
2 PTZ00246 proteasome subunit al 100.0 3.5E-61 7.6E-66 411.9 30.3 236 7-245 3-244 (253)
3 PRK03996 proteasome subunit al 100.0 8.1E-61 1.8E-65 407.0 30.3 238 1-242 1-239 (241)
4 KOG0176 20S proteasome, regula 100.0 3.1E-61 6.8E-66 379.7 20.1 232 6-242 5-241 (241)
5 KOG0182 20S proteasome, regula 100.0 6.3E-60 1.4E-64 376.0 25.7 246 1-246 1-246 (246)
6 cd03754 proteasome_alpha_type_ 100.0 5.9E-59 1.3E-63 389.0 26.3 213 8-220 1-215 (215)
7 TIGR03633 arc_protsome_A prote 100.0 2.3E-58 5.1E-63 388.0 27.3 222 8-234 2-224 (224)
8 cd03751 proteasome_alpha_type_ 100.0 2.6E-58 5.5E-63 384.2 26.1 210 7-220 2-212 (212)
9 cd03752 proteasome_alpha_type_ 100.0 3.7E-58 8.1E-63 383.9 26.7 210 8-220 2-213 (213)
10 KOG0183 20S proteasome, regula 100.0 1E-58 2.2E-63 369.7 19.9 234 6-243 1-234 (249)
11 cd03755 proteasome_alpha_type_ 100.0 8.5E-58 1.9E-62 380.2 26.2 207 9-220 1-207 (207)
12 cd03749 proteasome_alpha_type_ 100.0 1.3E-57 2.8E-62 380.0 26.5 209 9-221 1-211 (211)
13 COG0638 PRE1 20S proteasome, a 100.0 9E-57 2E-61 380.0 28.7 232 8-245 2-235 (236)
14 cd03756 proteasome_alpha_arche 100.0 1.4E-56 2.9E-61 374.0 26.8 210 8-221 1-210 (211)
15 cd01911 proteasome_alpha prote 100.0 1.2E-55 2.6E-60 367.8 25.8 209 9-220 1-209 (209)
16 KOG0184 20S proteasome, regula 100.0 4E-56 8.7E-61 356.5 21.2 232 6-241 5-237 (254)
17 cd03753 proteasome_alpha_type_ 100.0 1.7E-55 3.7E-60 367.9 25.7 208 9-220 1-213 (213)
18 KOG0181 20S proteasome, regula 100.0 4.5E-56 9.7E-61 349.8 18.9 229 8-242 5-233 (233)
19 KOG0178 20S proteasome, regula 100.0 1.2E-54 2.5E-59 345.6 22.8 237 7-245 3-243 (249)
20 KOG0863 20S proteasome, regula 100.0 4.8E-53 1E-57 340.4 22.5 235 1-243 1-237 (264)
21 TIGR03690 20S_bact_beta protea 100.0 3.6E-46 7.8E-51 312.7 25.7 205 36-245 2-217 (219)
22 TIGR03691 20S_bact_alpha prote 100.0 5E-46 1.1E-50 312.6 25.2 204 25-239 17-228 (228)
23 cd03760 proteasome_beta_type_4 100.0 1E-45 2.2E-50 305.4 23.8 188 35-224 1-191 (197)
24 PTZ00488 Proteasome subunit be 100.0 2.3E-45 5.1E-50 312.0 25.7 203 31-245 35-241 (247)
25 cd03758 proteasome_beta_type_2 100.0 3.2E-45 6.9E-50 301.5 24.2 184 37-224 2-187 (193)
26 cd03759 proteasome_beta_type_3 100.0 4.9E-45 1.1E-49 300.8 23.9 190 35-230 2-194 (195)
27 cd03761 proteasome_beta_type_5 100.0 3.2E-44 7E-49 294.4 23.8 185 37-230 1-187 (188)
28 cd03757 proteasome_beta_type_1 100.0 8.1E-44 1.7E-48 297.1 23.0 192 34-229 6-206 (212)
29 TIGR03634 arc_protsome_B prote 100.0 2.4E-43 5.2E-48 288.5 23.7 182 36-224 1-184 (185)
30 cd03765 proteasome_beta_bacter 100.0 2.7E-43 5.9E-48 296.5 23.9 186 37-225 1-202 (236)
31 cd03764 proteasome_beta_archea 100.0 1.1E-42 2.3E-47 285.3 24.4 186 37-231 1-188 (188)
32 cd03762 proteasome_beta_type_6 100.0 2.2E-42 4.7E-47 283.5 23.8 182 37-225 1-184 (188)
33 cd03763 proteasome_beta_type_7 100.0 3.2E-42 6.9E-47 282.8 23.9 181 37-225 1-183 (189)
34 PF00227 Proteasome: Proteasom 100.0 1.2E-41 2.6E-46 279.1 23.6 186 32-220 1-190 (190)
35 cd01912 proteasome_beta protea 100.0 5.6E-41 1.2E-45 275.2 23.8 183 37-225 1-185 (189)
36 cd01906 proteasome_protease_Hs 100.0 2.8E-40 6E-45 269.2 23.9 180 37-220 1-182 (182)
37 KOG0177 20S proteasome, regula 100.0 1.4E-37 2.9E-42 244.4 17.1 188 38-231 3-192 (200)
38 KOG0179 20S proteasome, regula 100.0 1.8E-35 4E-40 235.6 18.5 197 31-231 24-231 (235)
39 KOG0175 20S proteasome, regula 100.0 2.6E-35 5.6E-40 241.3 16.8 199 35-242 70-270 (285)
40 KOG0174 20S proteasome, regula 100.0 2.2E-35 4.7E-40 232.6 15.4 201 31-239 15-217 (224)
41 KOG0173 20S proteasome, regula 100.0 6.2E-34 1.3E-38 232.7 17.0 189 30-227 32-222 (271)
42 KOG0185 20S proteasome, regula 100.0 3.4E-32 7.5E-37 220.3 14.8 219 13-236 13-241 (256)
43 PRK05456 ATP-dependent proteas 100.0 8.9E-31 1.9E-35 210.6 19.0 166 36-219 1-171 (172)
44 cd01913 protease_HslV Protease 100.0 4.2E-30 9.1E-35 205.3 18.8 163 37-219 1-170 (171)
45 TIGR03692 ATP_dep_HslV ATP-dep 100.0 1.9E-29 4.1E-34 201.6 17.8 164 37-219 1-170 (171)
46 cd01901 Ntn_hydrolase The Ntn 100.0 1.1E-28 2.3E-33 195.6 21.8 161 37-203 1-163 (164)
47 KOG0180 20S proteasome, regula 100.0 4.7E-29 1E-33 193.4 17.6 185 35-225 7-194 (204)
48 PF10584 Proteasome_A_N: Prote 99.5 1.3E-14 2.8E-19 76.1 1.6 23 9-31 1-23 (23)
49 COG3484 Predicted proteasome-t 99.4 4E-12 8.7E-17 101.9 11.5 184 37-224 2-202 (255)
50 COG5405 HslV ATP-dependent pro 99.3 3E-11 6.5E-16 93.7 11.6 168 35-220 3-175 (178)
51 PF09894 DUF2121: Uncharacteri 96.5 0.29 6.3E-06 39.8 15.0 151 37-223 2-180 (194)
52 COG4079 Uncharacterized protei 95.0 1.1 2.4E-05 37.8 13.0 168 37-238 2-196 (293)
53 KOG3361 Iron binding protein i 79.1 3.8 8.3E-05 31.3 4.2 43 153-197 72-114 (157)
54 PF00178 Ets: Ets-domain; Int 64.4 17 0.00036 25.7 4.5 29 217-245 21-49 (85)
55 smart00413 ETS erythroblast tr 60.3 15 0.00033 26.0 3.7 27 216-242 20-46 (87)
56 smart00481 POLIIIAc DNA polyme 47.5 20 0.00043 23.5 2.5 32 14-46 6-38 (67)
57 PF07499 RuvA_C: RuvA, C-termi 47.4 14 0.0003 22.8 1.6 34 167-201 12-45 (47)
58 cd06404 PB1_aPKC PB1 domain is 46.3 1E+02 0.0022 21.7 6.9 50 186-240 17-66 (83)
59 PRK08868 flagellar protein Fla 46.1 1.2E+02 0.0026 23.7 6.9 33 212-244 99-132 (144)
60 PF11211 DUF2997: Protein of u 42.0 52 0.0011 20.5 3.6 32 152-183 3-34 (48)
61 KOG3806 Predicted transcriptio 41.7 38 0.00083 27.3 3.6 26 217-242 88-113 (177)
62 PRK07738 flagellar protein Fla 41.6 1.5E+02 0.0033 22.3 6.7 33 212-244 74-107 (117)
63 PF03646 FlaG: FlaG protein; 40.8 1.4E+02 0.003 21.6 6.4 33 212-244 65-98 (107)
64 PRK08452 flagellar protein Fla 40.8 1.6E+02 0.0035 22.3 6.8 32 213-244 82-114 (124)
65 PF00564 PB1: PB1 domain; Int 39.2 1.2E+02 0.0026 20.4 6.0 52 187-244 20-71 (84)
66 PF14804 Jag_N: Jag N-terminus 36.4 51 0.0011 20.9 3.0 28 189-222 5-32 (52)
67 COG4245 TerY Uncharacterized p 34.7 94 0.002 25.6 4.9 46 193-238 22-68 (207)
68 COG4831 Roadblock/LC7 domain [ 34.6 1.2E+02 0.0025 22.0 4.8 31 213-244 78-108 (109)
69 COG1334 FlaG Uncharacterized f 34.3 1.9E+02 0.0041 21.8 6.2 83 156-244 18-110 (120)
70 PF03928 DUF336: Domain of unk 31.6 61 0.0013 24.5 3.3 36 187-225 1-36 (132)
71 KOG1930 Focal adhesion protein 31.3 31 0.00066 31.7 1.8 19 181-200 212-230 (483)
72 PF06057 VirJ: Bacterial virul 30.9 77 0.0017 26.0 3.9 34 108-145 44-77 (192)
73 COG3411 Ferredoxin [Energy pro 30.6 1E+02 0.0022 20.5 3.7 26 219-244 21-46 (64)
74 cd06402 PB1_p62 The PB1 domain 30.4 2E+02 0.0043 20.4 6.2 50 189-243 27-76 (87)
75 TIGR03285 methan_mark_14 putat 29.1 1.5E+02 0.0032 27.0 5.6 100 138-245 16-116 (445)
76 PF08289 Flu_M1_C: Influenza M 29.0 2.1E+02 0.0045 20.1 5.5 51 80-130 38-88 (95)
77 PF09887 DUF2114: Uncharacteri 29.0 2E+02 0.0043 26.4 6.3 100 138-245 18-119 (448)
78 cd06396 PB1_NBR1 The PB1 domai 28.9 2.1E+02 0.0045 20.0 5.7 47 188-242 21-67 (81)
79 PRK09732 hypothetical protein; 28.6 1.6E+02 0.0034 22.7 5.1 37 186-225 4-40 (134)
80 PF08529 NusA_N: NusA N-termin 27.8 2.2E+02 0.0048 21.2 5.7 43 186-229 12-55 (122)
81 PF01458 UPF0051: Uncharacteri 27.0 1.7E+02 0.0037 24.2 5.6 47 149-202 183-229 (229)
82 PF13983 YsaB: YsaB-like lipop 26.5 40 0.00088 22.7 1.3 21 4-24 53-73 (77)
83 PF09702 Cas_Csa5: CRISPR-asso 24.6 1.9E+02 0.004 21.3 4.5 64 177-244 9-87 (105)
84 TIGR02261 benz_CoA_red_D benzo 24.2 1.3E+02 0.0028 26.0 4.3 56 136-201 98-158 (262)
85 COG0279 GmhA Phosphoheptose is 23.8 88 0.0019 25.2 2.9 39 13-51 113-151 (176)
86 PF04539 Sigma70_r3: Sigma-70 23.2 1.7E+02 0.0036 19.5 4.0 35 91-125 3-37 (78)
87 cd00475 CIS_IPPS Cis (Z)-Isopr 22.6 1.7E+02 0.0036 24.6 4.6 52 188-242 19-72 (221)
88 TIGR00055 uppS undecaprenyl di 22.5 1.7E+02 0.0036 24.7 4.6 52 188-242 18-71 (226)
89 PF01242 PTPS: 6-pyruvoyl tetr 20.4 1.4E+02 0.0031 22.0 3.5 46 81-126 43-98 (123)
No 1
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=6.6e-62 Score=410.19 Aligned_cols=226 Identities=38% Similarity=0.644 Sum_probs=217.0
Q ss_pred CCcccceeCCCCccchhccHHHHHhccCceEEEEEcCCeEEEEEeccCCcCccccCCceeeEEecCeEEEEEecchHHHH
Q 025897 9 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADAR 88 (246)
Q Consensus 9 yd~~~t~f~p~Gr~~Q~eya~~av~~~G~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~ 88 (246)
||+++|+|||||||+|||||.+|++ +|+|+|||+++||||||+|++.+++++.+++.+||++|++|++|+++|+.+|++
T Consensus 1 yd~~~t~fsp~Grl~QveyA~~av~-~G~t~igik~~dgVvlaad~~~~~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~ 79 (227)
T cd03750 1 YSFSLTTFSPSGKLVQIEYALAAVS-SGAPSVGIKAANGVVLATEKKVPSPLIDESSVHKVEQITPHIGMVYSGMGPDFR 79 (227)
T ss_pred CCCCCceECCCCeEhHHHHHHHHHH-cCCCEEEEEeCCEEEEEEeecCCccccCCCCcceEEEEcCCEEEEEeEcHHhHH
Confidence 8999999999999999999999999 599999999999999999999998888888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCcceeeceEEee
Q 025897 89 TLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSA 168 (246)
Q Consensus 89 ~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~a~ 168 (246)
.+.+.+|.+++.|+++++++++++.+++++++.+|.|+++++.|||+|++||+|||+ .||+||.+||+|++.+++++|+
T Consensus 80 ~l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rP~~v~~li~G~D~-~g~~Ly~~d~~G~~~~~~~~a~ 158 (227)
T cd03750 80 VLVKKARKIAQQYYLVYGEPIPVSQLVREIASVMQEYTQSGGVRPFGVSLLIAGWDE-GGPYLYQVDPSGSYFTWKATAI 158 (227)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCCCChheEEEEEEEeC-CCCEEEEECCCCCEEeeeEEEE
Confidence 999999999999999999999999999999999999999999999999999999996 6999999999999999999999
Q ss_pred cCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEcCCCcEEEcCHHHHHHHH
Q 025897 169 GLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHL 239 (246)
Q Consensus 169 G~g~~~a~~~Le~~~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~~~iei~ii~~~~~~~~~l~~~eI~~~l 239 (246)
|+++++++++||++| +++||++||++++++||+.+.++++...+++|++|+++++ |++++++||+++|
T Consensus 159 G~g~~~~~~~Le~~~--~~~ms~eeai~l~~~~l~~~~~~~l~~~~iev~iv~~~~~-~~~~~~~ei~~~~ 226 (227)
T cd03750 159 GKNYSNAKTFLEKRY--NEDLELEDAIHTAILTLKEGFEGQMTEKNIEIGICGETKG-FRLLTPAEIKDYL 226 (227)
T ss_pred CCCCHHHHHHHHhhc--cCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEECCCC-EEECCHHHHHHHh
Confidence 999999999999998 6799999999999999999998888777999999998754 9999999999987
No 2
>PTZ00246 proteasome subunit alpha; Provisional
Probab=100.00 E-value=3.5e-61 Score=411.86 Aligned_cols=236 Identities=34% Similarity=0.547 Sum_probs=221.3
Q ss_pred CCCCcccceeCCCCccchhccHHHHHhccCceEEEEEcCCeEEEEEeccCCcCccccC-CceeeEEecCeEEEEEecchH
Q 025897 7 GGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHT-SVTHLFPITKYLGLLATGMTA 85 (246)
Q Consensus 7 ~~yd~~~t~f~p~Gr~~Q~eya~~av~~~G~t~vgi~~~dgvvla~d~~~~~~l~~~~-~~~Ki~~i~~~i~~~~sG~~~ 85 (246)
.+||+++|+|||||||+|||||+||+++ |+|+|||+++||||||+|++.+.+++..+ +.+||++|+++++++++|+.+
T Consensus 3 ~~yd~~~~~fsp~Grl~QvEYA~~av~~-g~t~Igik~~dgVvlaad~r~s~~~~~~~~~~~KI~~I~~~i~~~~sG~~~ 81 (253)
T PTZ00246 3 RRYDSRTTTFSPEGRLYQVEYALEAINN-ASLTVGILCKEGVILGADKPISSKLLDPGKINEKIYKIDSHIFCAVAGLTA 81 (253)
T ss_pred CccCCCCceECCCCEEhHHHHHHHHHHh-CCCEEEEEECCEEEEEEecCCCCcCccCCCCcccEEEecCCEEEEEEEcHH
Confidence 4799999999999999999999999995 99999999999999999999986666554 689999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCcceeeceE
Q 025897 86 DARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKA 165 (246)
Q Consensus 86 D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~ 165 (246)
|++.+.+.+|.+++.|++.++++++++.+++.++..+|.|+|+++.|||+|++||+|||++.||+||.+||+|++.++++
T Consensus 82 D~~~l~~~~r~~~~~~~~~~~~~~~v~~l~~~l~~~~q~~~~~~~~rP~~v~~li~G~D~~~gp~Ly~~D~~Gs~~~~~~ 161 (253)
T PTZ00246 82 DANILINQCRLYAQRYRYTYGEPQPVEQLVVQICDLKQSYTQFGGLRPFGVSFLFAGYDENLGYQLYHTDPSGNYSGWKA 161 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccCCEEEEEEEEeCCCCcEEEEECCCCCEecceE
Confidence 99999999999999999999999999999999999999999999999999999999999657899999999999999999
Q ss_pred EeecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCCC-cEEEEEEEcCC----CcEEEcCHHHHHHHHH
Q 025897 166 TSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKEN----PEFRVLSIEEIDEHLT 240 (246)
Q Consensus 166 ~a~G~g~~~a~~~Le~~~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~~-~iei~ii~~~~----~~~~~l~~~eI~~~l~ 240 (246)
+|+|+++++++++||+.| +++|+++||++++++||+.+..+|..++ +++|++|++++ +.|++++++||+++|.
T Consensus 162 ~a~G~gs~~~~~~Le~~~--~~~ms~eeai~l~~~al~~~~~~d~~s~~~vev~ii~~~~~~~~~~~~~l~~~ei~~~l~ 239 (253)
T PTZ00246 162 TAIGQNNQTAQSILKQEW--KEDLTLEQGLLLAAKVLTKSMDSTSPKADKIEVGILSHGETDGEPIQKMLSEKEIAELLK 239 (253)
T ss_pred EEECCCcHHHHHHHHHhc--cCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCcCCCCCeEECCHHHHHHHHH
Confidence 999999999999999998 6899999999999999999999887655 89999999874 3499999999999999
Q ss_pred Hhhcc
Q 025897 241 AISER 245 (246)
Q Consensus 241 ~i~~~ 245 (246)
++++.
T Consensus 240 ~~~~~ 244 (253)
T PTZ00246 240 KVTQE 244 (253)
T ss_pred HHhhh
Confidence 98753
No 3
>PRK03996 proteasome subunit alpha; Provisional
Probab=100.00 E-value=8.1e-61 Score=407.02 Aligned_cols=238 Identities=39% Similarity=0.678 Sum_probs=224.8
Q ss_pred CCCC-CCCCCCcccceeCCCCccchhccHHHHHhccCceEEEEEcCCeEEEEEeccCCcCccccCCceeeEEecCeEEEE
Q 025897 1 MSRG-SGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLL 79 (246)
Q Consensus 1 ~~~~-~~~~yd~~~t~f~p~Gr~~Q~eya~~av~~~G~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~ 79 (246)
|-|. ++++||+++|+||||||++|+|||.+|++ +|+|+|||+++||||||+|++.++.++..++.+||++|+++++++
T Consensus 1 ~~~~~~~~~y~~~~~~fsp~Gr~~Q~eya~~av~-~G~t~igik~~dgVvlaad~r~~~~~~~~~~~~KI~~I~~~i~~~ 79 (241)
T PRK03996 1 MMMQPQQMGYDRAITIFSPDGRLYQVEYAREAVK-RGTTAVGVKTKDGVVLAVDKRITSPLIEPSSIEKIFKIDDHIGAA 79 (241)
T ss_pred CCCCccccccCCCCceECCCCeEhHHHHHHHHHH-hCCCEEEEEeCCEEEEEEeccCCCcccCCCccceEEEEcCCEEEE
Confidence 3343 58899999999999999999999999999 499999999999999999999998888788899999999999999
Q ss_pred EecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCcc
Q 025897 80 ATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGH 159 (246)
Q Consensus 80 ~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~ 159 (246)
++|+.+|++.+.+.++.++..|+++++++++++.+++.+++.+|.|+++++.|||++++||+|||+ .||+||.+||+|+
T Consensus 80 ~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~~~~ilaG~d~-~gp~Ly~id~~G~ 158 (241)
T PRK03996 80 SAGLVADARVLIDRARVEAQINRLTYGEPIGVETLTKKICDHKQQYTQHGGVRPFGVALLIAGVDD-GGPRLFETDPSGA 158 (241)
T ss_pred EcccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCccchheEEEEEEEeC-CcCEEEEECCCCC
Confidence 999999999999999999999999999999999999999999999999989999999999999997 6899999999999
Q ss_pred eeeceEEeecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEcCCCcEEEcCHHHHHHHH
Q 025897 160 FFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHL 239 (246)
Q Consensus 160 ~~~~~~~a~G~g~~~a~~~Le~~~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~~~iei~ii~~~~~~~~~l~~~eI~~~l 239 (246)
+.+++++|+|+++..++++||+.| +++|+++||++++++||+.+.+++....+++|++|+++++.|+.++++||++++
T Consensus 159 ~~~~~~~a~G~g~~~~~~~Le~~~--~~~~s~eeai~l~~~al~~~~~~~~~~~~i~i~ii~~~~~~~~~~~~~ei~~~~ 236 (241)
T PRK03996 159 YLEYKATAIGAGRDTVMEFLEKNY--KEDLSLEEAIELALKALAKANEGKLDPENVEIAYIDVETKKFRKLSVEEIEKYL 236 (241)
T ss_pred eecceEEEECCCcHHHHHHHHHhc--ccCCCHHHHHHHHHHHHHHHhccCCCCCcEEEEEEECCCCcEEECCHHHHHHHH
Confidence 999999999999999999999998 688999999999999999998765655589999999998789999999999999
Q ss_pred HHh
Q 025897 240 TAI 242 (246)
Q Consensus 240 ~~i 242 (246)
+++
T Consensus 237 ~~~ 239 (241)
T PRK03996 237 EKL 239 (241)
T ss_pred HHh
Confidence 876
No 4
>KOG0176 consensus 20S proteasome, regulatory subunit alpha type PSMA5/PUP2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-61 Score=379.67 Aligned_cols=232 Identities=34% Similarity=0.615 Sum_probs=220.8
Q ss_pred CCCCCcccceeCCCCccchhccHHHHHhccCceEEEEEcCCeEEEEEeccCCcCccccCCceeeEEecCeEEEEEecchH
Q 025897 6 GGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTA 85 (246)
Q Consensus 6 ~~~yd~~~t~f~p~Gr~~Q~eya~~av~~~G~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~ 85 (246)
.+.||+.+++||||||+||||||.+|++ .|+|.|||++++||||+++||.+++|+.++...||++|++||+|++||+.+
T Consensus 5 rseydrgVNTfSpEGRlfQVEYaieAik-LGsTaIGv~TkEgVvL~vEKritSpLm~p~sveKi~eid~HIgca~SGl~a 83 (241)
T KOG0176|consen 5 RSEYDRGVNTFSPEGRLFQVEYAIEAIK-LGSTAIGVKTKEGVVLAVEKRITSPLMEPSSVEKIVEIDDHIGCAMSGLIA 83 (241)
T ss_pred HHHhcccccccCCCceeeehhhHHHHHh-cCCceeeeeccceEEEEEeccccCcccCchhhhhheehhhceeeecccccc
Confidence 4579999999999999999999999999 699999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccC-----CCCccceeEEEEEcCCCCcEEEEECCCcce
Q 025897 86 DARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAY-----MRPLGVVAMVLSIDEECGPRLFKCDPAGHF 160 (246)
Q Consensus 86 D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~-----~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~ 160 (246)
|++.+++.+|.+|++|++.||++++++.+.+.++++..+|..... .|||||++|+||+|+ .||+||..||+|++
T Consensus 84 DarTlve~arv~~qnh~f~Y~e~i~VEs~tq~v~~LaLrFGe~~~~~~~msRPFGValliAG~D~-~gpqL~h~dPSGtf 162 (241)
T KOG0176|consen 84 DARTLVERARVETQNHWFTYGEPISVESLTQAVSDLALRFGEGDDEEAIMSRPFGVALLIAGHDE-TGPQLYHLDPSGTF 162 (241)
T ss_pred chHHHHHHHHHHhhhceeecCCcccHHHHHHHHHHHHhHhCCCcchhhhhcCCcceEEEEeeccC-CCceEEEeCCCCce
Confidence 999999999999999999999999999999999999988865422 589999999999996 89999999999999
Q ss_pred eeceEEeecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEcCCCcEEEcCHHHHHHHHH
Q 025897 161 FGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLT 240 (246)
Q Consensus 161 ~~~~~~a~G~g~~~a~~~Le~~~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~~~iei~ii~~~~~~~~~l~~~eI~~~l~ 240 (246)
++|++-|+|+|+..|.+.|++.| .++|+++||+.+++..|+.+++..+++.|+|+.+|++++. |+.++++|++.++.
T Consensus 163 ~~~~AKAIGSgsEga~~~L~~e~--~~~ltL~ea~~~~L~iLkqVMeeKl~~~Nvev~~vt~e~~-f~~~t~EE~~~~i~ 239 (241)
T KOG0176|consen 163 IRYKAKAIGSGSEGAESSLQEEY--HKDLTLKEAEKIVLKILKQVMEEKLNSNNVEVAVVTPEGE-FHIYTPEEVEQVIK 239 (241)
T ss_pred EEecceeccccchHHHHHHHHHH--hhcccHHHHHHHHHHHHHHHHHHhcCccceEEEEEcccCc-eEecCHHHHHHHHh
Confidence 99999999999999999999998 5789999999999999999999999999999999999875 99999999999986
Q ss_pred Hh
Q 025897 241 AI 242 (246)
Q Consensus 241 ~i 242 (246)
++
T Consensus 240 ~~ 241 (241)
T KOG0176|consen 240 RL 241 (241)
T ss_pred cC
Confidence 53
No 5
>KOG0182 consensus 20S proteasome, regulatory subunit alpha type PSMA6/SCL1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.3e-60 Score=375.96 Aligned_cols=246 Identities=70% Similarity=1.059 Sum_probs=240.2
Q ss_pred CCCCCCCCCCcccceeCCCCccchhccHHHHHhccCceEEEEEcCCeEEEEEeccCCcCccccCCceeeEEecCeEEEEE
Q 025897 1 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLA 80 (246)
Q Consensus 1 ~~~~~~~~yd~~~t~f~p~Gr~~Q~eya~~av~~~G~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~ 80 (246)
|||||+.+||+++|+||||||++|||||.||+++.|-|.||++++|++|+++.|+.+.+|++++....+|+|.++++|++
T Consensus 1 ~s~gs~agfDrhitIFspeGrLyQVEYafkAin~~gltsVavrgkDcavvvsqKkvpDKLld~~tvt~~f~itk~ig~v~ 80 (246)
T KOG0182|consen 1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQAGLTSVAVRGKDCAVVVTQKKVPDKLLDSSTVTHLFRITKKIGCVI 80 (246)
T ss_pred CCCCCcCCccceEEEECCCceEEeeehHHHHhhcCCCceEEEcCCceEEEEecccCcccccccccceeEEEeeccceEEE
Confidence 89999999999999999999999999999999988999999999999999999999999999999999999999999999
Q ss_pred ecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCcce
Q 025897 81 TGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHF 160 (246)
Q Consensus 81 sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~ 160 (246)
+|+.+|++..++++|.++..+++.||.+||++.|++++++..|.|||+..+||+||.+++.|+|++.||.+|.+||.|-+
T Consensus 81 tG~~aDar~~v~rar~eAa~~~yk~Gyemp~DiL~k~~Ad~~QvytQ~a~mRplg~~~~~i~~D~E~gP~vYk~DpAGyy 160 (246)
T KOG0182|consen 81 TGMIADARSQVQRARYEAAEFRYKYGYEMPCDILAKRMADKSQVYTQNAAMRPLGVAATLIGVDEERGPSVYKTDPAGYY 160 (246)
T ss_pred ecCCcchHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHhhHHHHHhhhhhhcccceeEEEEEeccccCcceEeecCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999899999999999999
Q ss_pred eeceEEeecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEcCCCcEEEcCHHHHHHHHH
Q 025897 161 FGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLT 240 (246)
Q Consensus 161 ~~~~~~a~G~g~~~a~~~Le~~~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~~~iei~ii~~~~~~~~~l~~~eI~~~l~ 240 (246)
..++++|.|...+.+..+|||+++++.++|.+|++++++.||..++.-|..+.++||.+++++.++|++|+.+||++.|.
T Consensus 161 ~g~kAtaaG~Kq~e~tsfLEKk~Kk~~~~t~~e~ve~ai~al~~sl~~Dfk~se~EVgvv~~~~p~f~~Ls~~eie~hL~ 240 (246)
T KOG0182|consen 161 YGFKATAAGVKQQEATSFLEKKYKKDIDLTFEETVETAISALQSSLGIDFKSSELEVGVVTVDNPEFRILSAEEIEEHLQ 240 (246)
T ss_pred ccceeeecccchhhHHHHHHHhhccCccchHHHHHHHHHHHHHHHHhcccCCcceEEEEEEcCCcceeeccHHHHHHHHH
Confidence 99999999999999999999999777778999999999999999998899888999999999999999999999999999
Q ss_pred HhhccC
Q 025897 241 AISERD 246 (246)
Q Consensus 241 ~i~~~~ 246 (246)
.|+|||
T Consensus 241 ~IAEkd 246 (246)
T KOG0182|consen 241 AIAEKD 246 (246)
T ss_pred HhhhcC
Confidence 999997
No 6
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5.9e-59 Score=389.05 Aligned_cols=213 Identities=72% Similarity=1.109 Sum_probs=201.6
Q ss_pred CCCcccceeCCCCccchhccHHHHHhccCceEEEEEcCCeEEEEEeccCCcCccccCCceeeEEecCeEEEEEecchHHH
Q 025897 8 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADA 87 (246)
Q Consensus 8 ~yd~~~t~f~p~Gr~~Q~eya~~av~~~G~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~ 87 (246)
+||+++|+||||||++|||||+||++++|+|+|||+++||||||+|++.++.++..+..+||++|+++++|++||+.+|+
T Consensus 1 ~yd~~~~~fsp~Grl~Qveya~~a~~~~g~t~igi~~~d~Vvlaad~r~~~~~i~~~~~~Ki~~I~~~i~~~~sG~~~D~ 80 (215)
T cd03754 1 GFDRHITIFSPEGRLYQVEYAFKAVKNAGLTSVAVRGKDCAVVVTQKKVPDKLIDPSTVTHLFRITDEIGCVMTGMIADS 80 (215)
T ss_pred CCCCCCeeECCCCeEeHHHhHHHHHhcCCccEEEEEeCCEEEEEEeccccccccCCcccCceEEEcCCEEEEEEechhhH
Confidence 59999999999999999999999998668899999999999999999998777777788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCcceeeceEEe
Q 025897 88 RTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATS 167 (246)
Q Consensus 88 ~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~a 167 (246)
+.+.+++|.++..|+++++++++++.+++++++.+|.|+++++.|||++++||+|||+++||+||++||+|++.+++++|
T Consensus 81 ~~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~q~yt~~~~~RP~~v~~ii~G~D~~~gp~Ly~~Dp~Gs~~~~~~~a 160 (215)
T cd03754 81 RSQVQRARYEAAEFKYKYGYEMPVDVLAKRIADINQVYTQHAYMRPLGVSMILIGIDEELGPQLYKCDPAGYFAGYKATA 160 (215)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhCCCCCcCCeeEEEEEEEeCCCCeEEEEEcCCccEEeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999976799999999999999999999
Q ss_pred ecCChHHHHHHHHhhccCCCCC--CHHHHHHHHHHHHHHhhhccCCCCcEEEEEE
Q 025897 168 AGLKEQEAINFLEKKMKNDPAF--TFQETVQTAISTLQSVLQEDFKASEIEVGVV 220 (246)
Q Consensus 168 ~G~g~~~a~~~Le~~~~~~~~~--s~~ea~~l~~~~l~~~~~~d~~~~~iei~ii 220 (246)
+|+++++++++||++|+...+| |++||++++++||..+.+||+...++||+||
T Consensus 161 ~G~gs~~~~~~Le~~~~~~~~~~~s~eeai~l~~~al~~~~~rd~~~~~~ei~~~ 215 (215)
T cd03754 161 AGVKEQEATNFLEKKLKKKPDLIESYEETVELAISCLQTVLSTDFKATEIEVGVV 215 (215)
T ss_pred ECCCcHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEC
Confidence 9999999999999998543358 9999999999999999999988668999875
No 7
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=2.3e-58 Score=387.96 Aligned_cols=222 Identities=42% Similarity=0.719 Sum_probs=210.9
Q ss_pred CCCcccceeCCCCccchhccHHHHHhccCceEEEEEcCCeEEEEEeccCCcCccccCCceeeEEecCeEEEEEecchHHH
Q 025897 8 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADA 87 (246)
Q Consensus 8 ~yd~~~t~f~p~Gr~~Q~eya~~av~~~G~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~ 87 (246)
+||.++|+|||||||+|||||++++++ |+|+|||+++||||||+|++.+++++..++.+||++|+++++|++||+.+|+
T Consensus 2 ~~~~~~~~f~p~Grl~Qieya~~av~~-G~tvigi~~~dgvvlaad~r~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~ 80 (224)
T TIGR03633 2 GYDRAITVFSPDGRLYQVEYAREAVKR-GTTAVGIKTKDGVVLAVDKRITSKLVEPSSIEKIFKIDDHIGAATSGLVADA 80 (224)
T ss_pred CCCCCCceECCCCeEeHHHHHHHHHHc-CCCEEEEEECCEEEEEEeccCCccccCCCccceEEEECCCEEEEEeecHHhH
Confidence 699999999999999999999999995 9999999999999999999999888877889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCcceeeceEEe
Q 025897 88 RTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATS 167 (246)
Q Consensus 88 ~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~a 167 (246)
+.+.+.++.++..|+++++++++++.+++++++.+|.|+++++.|||+|++||+|+|+ ++|+||.+||.|++.+++++|
T Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~~~~~~rP~~v~~ll~G~d~-~~~~Ly~~D~~G~~~~~~~~a 159 (224)
T TIGR03633 81 RVLIDRARIEAQINRLTYGEPIDVETLAKKICDLKQQYTQHGGVRPFGVALLIAGVDD-GGPRLFETDPSGALLEYKATA 159 (224)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCccccceEEEEEEEeC-CcCEEEEECCCCCeecceEEE
Confidence 9999999999999999999999999999999999999999888999999999999996 799999999999999999999
Q ss_pred ecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCCC-cEEEEEEEcCCCcEEEcCHHH
Q 025897 168 AGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLSIEE 234 (246)
Q Consensus 168 ~G~g~~~a~~~Le~~~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~~-~iei~ii~~~~~~~~~l~~~e 234 (246)
+|+++.+++++|++.| +++|+.+||++++++||+.+.+ |+.++ +++|++|++++..|++++++|
T Consensus 160 ~G~g~~~~~~~L~~~~--~~~~~~eeai~l~~~al~~~~~-d~~~~~~i~i~ii~~~g~~~~~~~~~~ 224 (224)
T TIGR03633 160 IGAGRQAVTEFLEKEY--REDLSLDEAIELALKALYSAVE-DKLTPENVEVAYITVEDKKFRKLSVEE 224 (224)
T ss_pred ECCCCHHHHHHHHHhc--cCCCCHHHHHHHHHHHHHHHhc-ccCCCCcEEEEEEEcCCCcEEECCCCC
Confidence 9999999999999998 6899999999999999999887 65554 799999999887799998875
No 8
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.6e-58 Score=384.20 Aligned_cols=210 Identities=38% Similarity=0.541 Sum_probs=199.4
Q ss_pred CCCCcccceeCCCCccchhccHHHHHhccCceEEEEEcCCeEEEEEeccCCcCccccCCceeeEEecCeEEEEEecchHH
Q 025897 7 GGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 86 (246)
Q Consensus 7 ~~yd~~~t~f~p~Gr~~Q~eya~~av~~~G~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D 86 (246)
.+||+++|+|||||||+|||||++|+++ |+|+|||+++||||||+|++.++.++..++.+||++|++|++++++|+.+|
T Consensus 2 ~~yd~~~t~fsp~Grl~Qveya~~a~~~-G~tvIgik~kdgVvla~d~r~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D 80 (212)
T cd03751 2 TGYDLSASTFSPDGRVFQVEYANKAVEN-SGTAIGIRCKDGVVLAVEKLVTSKLYEPGSNKRIFNVDRHIGIAVAGLLAD 80 (212)
T ss_pred CCccCCCceECCCCcchHHHHHHHHHhc-CCCEEEEEeCCEEEEEEEccccccccCcchhcceeEecCcEEEEEEEChHh
Confidence 5799999999999999999999999995 999999999999999999999888777778899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCcceeeceEE
Q 025897 87 ARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKAT 166 (246)
Q Consensus 87 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~ 166 (246)
++.+.+++|.+++.|+++++++++++.++++|++.+|.|+++++.|||+|++||+|||+ +||+||.+||+|++.+++++
T Consensus 81 ~~~l~~~~r~~~~~y~~~~~~~~~v~~la~~ls~~~~~~t~~~~~rP~~vs~li~G~D~-~gp~Ly~~D~~Gs~~~~~~~ 159 (212)
T cd03751 81 GRHLVSRAREEAENYRDNYGTPIPVKVLADRVAMYMHAYTLYSSVRPFGCSVLLGGYDS-DGPQLYMIEPSGVSYGYFGC 159 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccCCCcCCceEEEEEEEEeC-CcCEEEEECCCCCEEeeEEE
Confidence 99999999999999999999999999999999999999999989999999999999996 68999999999999999999
Q ss_pred eecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhcc-CCCCcEEEEEE
Q 025897 167 SAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQED-FKASEIEVGVV 220 (246)
Q Consensus 167 a~G~g~~~a~~~Le~~~~~~~~~s~~ea~~l~~~~l~~~~~~d-~~~~~iei~ii 220 (246)
|+|+++.+++++||++| +++||++||+++++++|+.+++.+ ....+|||.++
T Consensus 160 a~G~g~~~a~~~Lek~~--~~dms~eeai~l~~~~L~~~~~~~~~~~~~iei~~~ 212 (212)
T cd03751 160 AIGKGKQAAKTELEKLK--FSELTCREAVKEAAKIIYIVHDEIKDKAFELELSWV 212 (212)
T ss_pred EECCCCHHHHHHHHHhc--cCCCCHHHHHHHHHHHHHHHhhccCCCCccEEEEEC
Confidence 99999999999999998 689999999999999999999744 56668999874
No 9
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.7e-58 Score=383.91 Aligned_cols=210 Identities=33% Similarity=0.567 Sum_probs=199.1
Q ss_pred CCCcccceeCCCCccchhccHHHHHhccCceEEEEEcCCeEEEEEeccCCcCcccc-CCceeeEEecCeEEEEEecchHH
Q 025897 8 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDH-TSVTHLFPITKYLGLLATGMTAD 86 (246)
Q Consensus 8 ~yd~~~t~f~p~Gr~~Q~eya~~av~~~G~t~vgi~~~dgvvla~d~~~~~~l~~~-~~~~Ki~~i~~~i~~~~sG~~~D 86 (246)
+||+++|+||||||++|+|||.||+++ |+|+|||+++||||||+|++.+.+++.. ++.+||++|+++++|++||+.+|
T Consensus 2 ~yd~~~~~fsp~Grl~Qveya~~a~~~-G~t~igi~~~dgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D 80 (213)
T cd03752 2 RYDSRTTIFSPEGRLYQVEYAMEAISH-AGTCLGILAKDGIVLAAEKKVTSKLLDQSFSSEKIYKIDDHIACAVAGITSD 80 (213)
T ss_pred CcCCCCceECCCCEEhHHHhHHHHHhc-CCCEEEEEeCCEEEEEEEeccCCcccCCCcCcceEEEecCCEEEEEecChHh
Confidence 799999999999999999999999995 9999999999999999999999666654 48899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCcceeeceEE
Q 025897 87 ARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKAT 166 (246)
Q Consensus 87 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~ 166 (246)
++.+.+++|.+++.|+++++++++++.+++.|+..+|.|+++++.|||+|++||+|||++.||+||.+||+|++.+++++
T Consensus 81 ~~~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~~~~t~~~~~RP~~v~~li~G~D~~~g~~ly~~d~~G~~~~~~~~ 160 (213)
T cd03752 81 ANILINYARLIAQRYLYSYQEPIPVEQLVQRLCDIKQGYTQYGGLRPFGVSFLYAGWDKHYGFQLYQSDPSGNYSGWKAT 160 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCcccceeEEEEEEEeCCCCCEEEEECCCCCeeeeeEE
Confidence 99999999999999999999999999999999999999999999999999999999997579999999999999999999
Q ss_pred eecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCC-CcEEEEEE
Q 025897 167 SAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKA-SEIEVGVV 220 (246)
Q Consensus 167 a~G~g~~~a~~~Le~~~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~-~~iei~ii 220 (246)
|+|+++.+++++||++| +++||++||++++++||+.+.+|+... .++||++|
T Consensus 161 a~G~gs~~~~~~Le~~y--~~~ms~eea~~l~~~al~~~~~r~~~~~~~~ei~~~ 213 (213)
T cd03752 161 AIGNNNQAAQSLLKQDY--KDDMTLEEALALAVKVLSKTMDSTKLTSEKLEFATL 213 (213)
T ss_pred EECCCcHHHHHHHHHhc--cCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEC
Confidence 99999999999999998 689999999999999999999988554 47999875
No 10
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-58 Score=369.66 Aligned_cols=234 Identities=36% Similarity=0.568 Sum_probs=222.0
Q ss_pred CCCCCcccceeCCCCccchhccHHHHHhccCceEEEEEcCCeEEEEEeccCCcCccccCCceeeEEecCeEEEEEecchH
Q 025897 6 GGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTA 85 (246)
Q Consensus 6 ~~~yd~~~t~f~p~Gr~~Q~eya~~av~~~G~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~ 85 (246)
+++||+.+|+|||||+|||||||++||++ |+|+||++++|+|||+.++++.++|.+.+...||..+++|++|+++|+.+
T Consensus 1 msrydraltvFSPDGhL~QVEYAqEAvrk-GstaVgvrg~~~vvlgvEkkSv~~Lq~~r~~rkI~~ld~hV~mafaGl~a 79 (249)
T KOG0183|consen 1 MSRYDRALTVFSPDGHLFQVEYAQEAVRK-GSTAVGVRGNNCVVLGVEKKSVPKLQDERTVRKISMLDDHVVMAFAGLTA 79 (249)
T ss_pred CCccccceEEECCCCCEEeeHhHHHHHhc-CceEEEeccCceEEEEEeecchhhhhhhhhhhhheeecceeeEEecCCCc
Confidence 35799999999999999999999999995 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCcceeeceE
Q 025897 86 DARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKA 165 (246)
Q Consensus 86 D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~ 165 (246)
|++.|++.+|.+|+.|+++.+.|++++++.++|+.+.|.|||..+.||||++.||+|||+++.|.||.+||+|.|.+|++
T Consensus 80 DArilinrArvecqShrlt~edpvtveyitRyiA~~kQrYTqs~grRPFGvs~Li~GfD~~g~p~lyqtePsG~f~ewka 159 (249)
T KOG0183|consen 80 DARILINRARVECQSHRLTLEDPVTVEYITRYIAGLKQRYTQSNGRRPFGVSTLIGGFDPDGTPRLYQTEPSGIFSEWKA 159 (249)
T ss_pred cceeehhhHhHhhhhhhcccCCCcHHHHHHHHHHHhhhhhhccCCcccccceEEEEeeCCCCCeeeEeeCCCcchhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999987899999999999999999
Q ss_pred EeecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEcCCCcEEEcCHHHHHHHHHHhh
Q 025897 166 TSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAIS 243 (246)
Q Consensus 166 ~a~G~g~~~a~~~Le~~~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~~~iei~ii~~~~~~~~~l~~~eI~~~l~~i~ 243 (246)
.|+|.+++.++.+|||.|...+-.+..++++|++++|.++... ...++|++++++.+. ++.++.++|+.++..|+
T Consensus 160 ~aiGr~sk~VrEflEK~y~e~~~~~~~~~ikL~ir~LleVvqs--~~~nie~aVm~~~~~-~~~l~~~~I~~~v~~ie 234 (249)
T KOG0183|consen 160 NAIGRSSKTVREFLEKNYKEEAIATEGETIKLAIRALLEVVQS--GGKNIEVAVMKRRKD-LKMLESEEIDDIVKEIE 234 (249)
T ss_pred cccccccHHHHHHHHHhcccccccccccHHHHHHHHHHHHhhc--CCCeeEEEEEecCCc-eeecCHHHHHHHHHHHH
Confidence 9999999999999999996555688899999999999998753 345899999999887 99999999999998875
No 11
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=8.5e-58 Score=380.17 Aligned_cols=207 Identities=38% Similarity=0.626 Sum_probs=197.1
Q ss_pred CCcccceeCCCCccchhccHHHHHhccCceEEEEEcCCeEEEEEeccCCcCccccCCceeeEEecCeEEEEEecchHHHH
Q 025897 9 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADAR 88 (246)
Q Consensus 9 yd~~~t~f~p~Gr~~Q~eya~~av~~~G~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~ 88 (246)
||+++|+||||||++|||||.+|+++ |+|+|||+++||||||+|++..+.++.++..+||++|++|++|++||+.+|++
T Consensus 1 ~d~~~~~fsp~Gr~~Qveya~~av~~-G~t~Igik~~dgVvlaad~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~ 79 (207)
T cd03755 1 YDRAITVFSPDGHLFQVEYAQEAVRK-GTTAVGVRGKDCVVLGVEKKSVAKLQDPRTVRKICMLDDHVCLAFAGLTADAR 79 (207)
T ss_pred CCCCCceECCCCeEeHHHHHHHHHHc-CCCEEEEEeCCEEEEEEecCCCCcccCCCccCcEEEECCCEEEEEecchhhHH
Confidence 89999999999999999999999995 99999999999999999999887788777889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCcceeeceEEee
Q 025897 89 TLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSA 168 (246)
Q Consensus 89 ~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~a~ 168 (246)
.+.+.+|.+++.|+++++++++++.+++++++.+|.|+++++.|||+|++||+|||+++||+||.+||+|++.+++++|+
T Consensus 80 ~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~y~~~~~~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~a~ 159 (207)
T cd03755 80 VLINRARLECQSHRLTVEDPVTVEYITRYIAGLQQRYTQSGGVRPFGISTLIVGFDPDGTPRLYQTDPSGTYSAWKANAI 159 (207)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCcccceeEEEEEEEeCCCCeEEEEECCCcCEEcceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999767999999999999999999999
Q ss_pred cCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEE
Q 025897 169 GLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVV 220 (246)
Q Consensus 169 G~g~~~a~~~Le~~~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~~~iei~ii 220 (246)
|+++++++++||++| +++||.+||++++++||+.+.+ ....++||+++
T Consensus 160 G~gs~~~~~~Le~~~--~~~ms~eeai~l~~~~l~~~~~--~~~~~~e~~~~ 207 (207)
T cd03755 160 GRNSKTVREFLEKNY--KEEMTRDDTIKLAIKALLEVVQ--SGSKNIELAVM 207 (207)
T ss_pred CCCCHHHHHHHHhhc--cCCCCHHHHHHHHHHHHHHHhC--CCCCeEEEEEC
Confidence 999999999999998 6899999999999999999985 44458999875
No 12
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.3e-57 Score=380.00 Aligned_cols=209 Identities=34% Similarity=0.620 Sum_probs=197.1
Q ss_pred CCcccceeCCCCccchhccHHHHHhccCceEEEEEcCCeEEEEEeccCCcCccccCCceeeEEecCeEEEEEecchHHHH
Q 025897 9 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADAR 88 (246)
Q Consensus 9 yd~~~t~f~p~Gr~~Q~eya~~av~~~G~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~ 88 (246)
||+++|+||||||++|||||++|+++ |+|+|||+++||||||+|++.+..+. +..+||++|+++++|++||+.+|++
T Consensus 1 yd~~~t~fsp~Grl~Qveya~~av~~-G~t~IgIk~~dgVvlaad~r~~~~l~--~~~~KI~~I~~~i~~~~sG~~~D~~ 77 (211)
T cd03749 1 YDTDVTTWSPQGRLFQVEYAMEAVKQ-GSATVGLKSKTHAVLVALKRATSELS--SYQKKIFKVDDHIGIAIAGLTADAR 77 (211)
T ss_pred CCCCCceECCCCeEeHHHHHHHHHhc-CCCEEEEEeCCEEEEEEeccCccccC--CccccEEEeCCCEEEEEEeChHhHH
Confidence 89999999999999999999999995 99999999999999999999876653 4569999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCcceeeceEEee
Q 025897 89 TLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSA 168 (246)
Q Consensus 89 ~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~a~ 168 (246)
.+.+++|.+++.|+++++++++++.+++.+++.+|.|+++.+.|||+|++||+|||+ .||+||.+||+|++.+++++|+
T Consensus 78 ~l~~~~r~~~~~~~~~~~~~~~v~~la~~is~~~~~~t~~~~~rP~~v~~ii~G~D~-~gp~Ly~~Dp~G~~~~~~~~a~ 156 (211)
T cd03749 78 VLSRYMRQECLNYRFVYDSPIPVSRLVSKVAEKAQINTQRYGRRPYGVGLLIAGYDE-SGPHLFQTCPSGNYFEYKATSI 156 (211)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEEcC-CCCeEEEECCCcCEeeeeEEEE
Confidence 999999999999999999999999999999999999999989999999999999996 6899999999999999999999
Q ss_pred cCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhcc--CCCCcEEEEEEE
Q 025897 169 GLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQED--FKASEIEVGVVS 221 (246)
Q Consensus 169 G~g~~~a~~~Le~~~~~~~~~s~~ea~~l~~~~l~~~~~~d--~~~~~iei~ii~ 221 (246)
|++++.++++||++|+++++||++||+++++++|+.++++| ....+|||++|+
T Consensus 157 G~g~~~a~~~Le~~~~~~~~ms~ee~i~~~~~~l~~~~~~~~~~~~~~iei~ii~ 211 (211)
T cd03749 157 GARSQSARTYLERHFEEFEDCSLEELIKHALRALRETLPGEQELTIKNVSIAIVG 211 (211)
T ss_pred CCCcHHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHhccCCCCCCCcEEEEEEC
Confidence 99999999999999965589999999999999999999877 555689999984
No 13
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9e-57 Score=379.99 Aligned_cols=232 Identities=42% Similarity=0.712 Sum_probs=218.7
Q ss_pred CCCcccceeCCCCccchhccHHHHHhccCceEEEEEcCCeEEEEEeccCCcC-ccccCCceeeEEecCeEEEEEecchHH
Q 025897 8 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDK-LLDHTSVTHLFPITKYLGLLATGMTAD 86 (246)
Q Consensus 8 ~yd~~~t~f~p~Gr~~Q~eya~~av~~~G~t~vgi~~~dgvvla~d~~~~~~-l~~~~~~~Ki~~i~~~i~~~~sG~~~D 86 (246)
+||+.+++|+|+||++|+||+.+++.+.|+|+|||+++||||||+|+|.+.+ ++..++.+|||+|++|++|++||+.+|
T Consensus 2 ~~~~~~~~fsp~g~l~q~e~a~~a~~~~gtT~vgik~~dgVVlaadkr~t~~~~~~~~~~~Ki~~I~d~i~~~~sG~~aD 81 (236)
T COG0638 2 GYDRAITIFSPEGRLFQVEYALEAVKRGGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDDHIGMAIAGLAAD 81 (236)
T ss_pred CCcCcceeECCCCchHHHHHHHHHHHcCCceEEEEEecCEEEEEEeccCCCCceecccccceEEEecCCEEEEeccCcHh
Confidence 5899999999999999999999999976699999999999999999999955 555566999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCcceeeceEE
Q 025897 87 ARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKAT 166 (246)
Q Consensus 87 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~ 166 (246)
++.|++++|.+++.|++.++++++++.+++.+++.+|.|+++ .|||++++||+|+|+ ++|+||++||+|++.+++++
T Consensus 82 a~~lv~~~r~~a~~~~~~~~~~i~v~~la~~ls~~l~~~~~~--~rP~gv~~iiaG~d~-~~p~Ly~~Dp~G~~~~~~~~ 158 (236)
T COG0638 82 AQVLVRYARAEAQLYRLRYGEPISVEALAKLLSNILQEYTQS--GRPYGVSLLVAGVDD-GGPRLYSTDPSGSYNEYKAT 158 (236)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccC--cccceEEEEEEEEcC-CCCeEEEECCCCceeecCEE
Confidence 999999999999999999999999999999999999999886 799999999999998 89999999999999999999
Q ss_pred eecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCCC-cEEEEEEEcCCCcEEEcCHHHHHHHHHHhhcc
Q 025897 167 SAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLSIEEIDEHLTAISER 245 (246)
Q Consensus 167 a~G~g~~~a~~~Le~~~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~~-~iei~ii~~~~~~~~~l~~~eI~~~l~~i~~~ 245 (246)
|+|+|++.++++||+.| +++|++|||++++++||+.+.+||..++ +++|++++++++ ++.++++++++++.++.++
T Consensus 159 a~Gsgs~~a~~~Le~~y--~~~m~~eeai~la~~al~~a~~rd~~s~~~~~v~vi~~~~~-~~~~~~~~~~~~~~~~~~~ 235 (236)
T COG0638 159 AIGSGSQFAYGFLEKEY--REDLSLEEAIELAVKALRAAIERDAASGGGIEVAVITKDEG-FRKLDGEEIKKLLDDLSEK 235 (236)
T ss_pred EEcCCcHHHHHHHHhhc--cCCCCHHHHHHHHHHHHHHHHhccccCCCCeEEEEEEcCCC-eEEcCHHHHHHHHHHHhhc
Confidence 99999999999999998 7889999999999999999999998555 799999999744 9999999999999998775
No 14
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.4e-56 Score=374.04 Aligned_cols=210 Identities=40% Similarity=0.707 Sum_probs=201.2
Q ss_pred CCCcccceeCCCCccchhccHHHHHhccCceEEEEEcCCeEEEEEeccCCcCccccCCceeeEEecCeEEEEEecchHHH
Q 025897 8 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADA 87 (246)
Q Consensus 8 ~yd~~~t~f~p~Gr~~Q~eya~~av~~~G~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~ 87 (246)
+||+++|+||||||++|+|||.|++++ |+|+|||+++||||||+|++.++.++..++.+||++|+++++|++||+.+|+
T Consensus 1 ~y~~~~~~fsp~G~l~Q~eya~~av~~-G~t~igik~~dgvvla~d~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~ 79 (211)
T cd03756 1 GYDRAITVFSPDGRLYQVEYAREAVKR-GTTALGIKCKEGVVLAVDKRITSKLVEPESIEKIYKIDDHVGAATSGLVADA 79 (211)
T ss_pred CCCCCCceECCCCeEhHHHHHHHHHHc-CCCEEEEEECCEEEEEEeccCCCcccCCCccceEEEEcCCEEEEEecCHHHH
Confidence 599999999999999999999999995 9999999999999999999999888877889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCcceeeceEEe
Q 025897 88 RTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATS 167 (246)
Q Consensus 88 ~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~a 167 (246)
+.+.+.++.+++.|+++++++++++.+++.+++.++.|+++++.|||++++||+|||+ .||+||.+||+|++.+++++|
T Consensus 80 ~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~ll~G~D~-~~~~ly~vd~~G~~~~~~~~a 158 (211)
T cd03756 80 RVLIDRARVEAQIHRLTYGEPIDVEVLVKKICDLKQQYTQHGGVRPFGVALLIAGVDD-GGPRLFETDPSGAYNEYKATA 158 (211)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCeechhEEEEEEEEeC-CCCEEEEECCCCCeeeeEEEE
Confidence 9999999999999999999999999999999999999999889999999999999997 799999999999999999999
Q ss_pred ecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEE
Q 025897 168 AGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVS 221 (246)
Q Consensus 168 ~G~g~~~a~~~Le~~~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~~~iei~ii~ 221 (246)
+|+++++++++||+.| +|+|+++||++++++||+.+.+++....+++|++|+
T Consensus 159 ~G~g~~~~~~~Le~~~--~~~m~~~ea~~l~~~~l~~~~~~~~~~~~~~v~ii~ 210 (211)
T cd03756 159 IGSGRQAVTEFLEKEY--KEDMSLEEAIELALKALYAALEENETPENVEIAYVT 210 (211)
T ss_pred ECCCCHHHHHHHHhhc--cCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEe
Confidence 9999999999999998 689999999999999999999888855589999986
No 15
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=100.00 E-value=1.2e-55 Score=367.79 Aligned_cols=209 Identities=52% Similarity=0.836 Sum_probs=199.2
Q ss_pred CCcccceeCCCCccchhccHHHHHhccCceEEEEEcCCeEEEEEeccCCcCccccCCceeeEEecCeEEEEEecchHHHH
Q 025897 9 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADAR 88 (246)
Q Consensus 9 yd~~~t~f~p~Gr~~Q~eya~~av~~~G~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~ 88 (246)
||.++|+||||||++|+|||++++. +|+|+||++++||||||+|++.++.++..++.+||++|+++++++++|+.+|++
T Consensus 1 ~~~~~~~f~~~G~~~q~eya~~~~~-~G~tvigi~~~dgVvlaaD~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~ 79 (209)
T cd01911 1 YDRSITTFSPEGRLFQVEYALEAVK-NGSTAVGIKGKDGVVLAVEKKVTSKLLDPSSVEKIFKIDDHIGCAVAGLTADAR 79 (209)
T ss_pred CCCCCccCCCCCEEeHHHHHHHHHH-cCCCEEEEEECCEEEEEEEecCCccccCCcccceEEEecCCeEEEeccCcHhHH
Confidence 8999999999999999999999999 599999999999999999999997777678889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCcceeeceEEee
Q 025897 89 TLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSA 168 (246)
Q Consensus 89 ~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~a~ 168 (246)
.+.+.++.++..|+++++++++++.+++++++.+|.|+++++.|||+|++||+|||+++||+||.+||.|++.+++++|+
T Consensus 80 ~l~~~l~~~~~~~~~~~g~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~iv~G~d~~~~~~Ly~iD~~G~~~~~~~~a~ 159 (209)
T cd01911 80 VLVNRARVEAQNYRYTYGEPIPVEVLVKRIADLAQVYTQYGGVRPFGVSLLIAGYDEEGGPQLYQTDPSGTYFGYKATAI 159 (209)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccChhheEEEEEEcCCCCcEEEEECCCCCeeeeeEEEe
Confidence 99999999999999999999999999999999999999999999999999999999866999999999999999999999
Q ss_pred cCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEE
Q 025897 169 GLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVV 220 (246)
Q Consensus 169 G~g~~~a~~~Le~~~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~~~iei~ii 220 (246)
|+++.+++++|++.| +|+|+.+||++++++||+.+.++|+...+++|+++
T Consensus 160 G~g~~~~~~~L~~~~--~~~ms~~ea~~l~~~~l~~~~~~d~~~~~~~i~i~ 209 (209)
T cd01911 160 GKGSQEAKTFLEKRY--KKDLTLEEAIKLALKALKEVLEEDKKAKNIEIAVV 209 (209)
T ss_pred CCCcHHHHHHHHHhc--ccCCCHHHHHHHHHHHHHHHHhccCCCCcEEEEEC
Confidence 999999999999999 68999999999999999999999993337999875
No 16
>KOG0184 consensus 20S proteasome, regulatory subunit alpha type PSMA3/PRE10 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-56 Score=356.50 Aligned_cols=232 Identities=35% Similarity=0.523 Sum_probs=210.4
Q ss_pred CCCCCcccceeCCCCccchhccHHHHHhccCceEEEEEcCCeEEEEEeccCCcCccccCCceeeEEecCeEEEEEecchH
Q 025897 6 GGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTA 85 (246)
Q Consensus 6 ~~~yd~~~t~f~p~Gr~~Q~eya~~av~~~G~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~ 85 (246)
+-+||++.++||||||+||+|||+|||.+ ++|+|||||+|||||++||..+++|..+..++||+.|++||+|+++|+.+
T Consensus 5 GtGyDls~s~fSpdGrvfQveYA~KAven-~~T~IGIk~kdGVVl~vEKli~SkLy~p~sn~ri~~V~r~iG~avaGl~~ 83 (254)
T KOG0184|consen 5 GTGYDLSASTFSPDGRVFQVEYAQKAVEN-SGTCIGIKCKDGVVLAVEKLITSKLYEPGSNERIFSVDRHIGMAVAGLIP 83 (254)
T ss_pred cccccccceeeCCCCceehHHHHHHHHhc-CCcEEEEecCCeEEEEEeeeecccccccCCCCceEeecccccEEEecccc
Confidence 34799999999999999999999999996 88999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCcceeeceE
Q 025897 86 DARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKA 165 (246)
Q Consensus 86 D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~ 165 (246)
|.+.|...+|.++..|+.+|+.++|...++..+++.+|.||.++..||||++.++++||. +||+||+++|+|..+.|++
T Consensus 84 Dg~~l~~~ar~ea~~~~~~y~~piP~~~la~rva~yvh~~Tly~~vRpfG~~~~~~~yd~-~g~~LymiepSG~~~~Y~~ 162 (254)
T KOG0184|consen 84 DGRHLVNRARDEAASWRKNYGDPIPGKHLADRVADYVHAFTLYSSVRPFGASTILGSYDD-EGPQLYMIEPSGSSYGYKG 162 (254)
T ss_pred chHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHhhhheeehhhccccccceEEEEEEeC-CCceEEEEcCCCCccceee
Confidence 999999999999999999999999999999999999999999999999999999999995 8999999999999999999
Q ss_pred EeecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCC-CcEEEEEEEcCCCcEEEcCHHHHHHHHHH
Q 025897 166 TSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKA-SEIEVGVVSKENPEFRVLSIEEIDEHLTA 241 (246)
Q Consensus 166 ~a~G~g~~~a~~~Le~~~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~-~~iei~ii~~~~~~~~~l~~~eI~~~l~~ 241 (246)
+|+|.+.|.|+++|||+- ..+|+.+|+++.+.+.|..+.+..-.- ..+||.|+..+....+...|+||-+..++
T Consensus 163 aaiGKgrq~aKtElEKL~--~~~mt~~e~VkeaakIiY~~HDe~KdK~feiEm~wvg~eTnG~h~~vp~el~~ea~~ 237 (254)
T KOG0184|consen 163 AAIGKGRQAAKTELEKLK--IDEMTCKELVKEAAKIIYKVHDENKDKEFEIEMGWVGEETNGLHEKVPSELLEEAEK 237 (254)
T ss_pred eeccchhHHHHHHHHhcc--cccccHHHHHHHHHheeEeecccccCcceEEEEEEEEeecCCccccCcHHHHHHHHH
Confidence 999999999999999984 568999999999999998886543322 26999999976443444444466554443
No 17
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.7e-55 Score=367.93 Aligned_cols=208 Identities=36% Similarity=0.649 Sum_probs=196.7
Q ss_pred CCcccceeCCCCccchhccHHHHHhccCceEEEEEcCCeEEEEEeccCCcCccccCCceeeEEecCeEEEEEecchHHHH
Q 025897 9 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADAR 88 (246)
Q Consensus 9 yd~~~t~f~p~Gr~~Q~eya~~av~~~G~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~ 88 (246)
||+++|+||||||++|+|||++++++ |+|+|||+++||||||+|++.+++++..++.+||++|+++++|+++|+.+|++
T Consensus 1 ~~~~~~~f~p~G~~~Q~eya~~a~~~-G~t~igik~~dgVvlaad~r~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~ 79 (213)
T cd03753 1 YDRGVNTFSPEGRLFQVEYAIEAIKL-GSTAIGIKTKEGVVLAVEKRITSPLMEPSSVEKIMEIDDHIGCAMSGLIADAR 79 (213)
T ss_pred CCCCCccCCCCCeEhHHHHHHHHHhc-CCCEEEEEeCCEEEEEEecccCCcCcCCCccceEEEEcCCEEEEEecCHHHHH
Confidence 89999999999999999999999995 99999999999999999999987777777889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcc-----CCCCccceeEEEEEcCCCCcEEEEECCCcceeec
Q 025897 89 TLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHA-----YMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGH 163 (246)
Q Consensus 89 ~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~-----~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~ 163 (246)
.+.+.+|.+++.|+++++++++++.+++++++.++.|+++. +.|||+|++||+|||+ +||+||.+||+|++.++
T Consensus 80 ~l~~~~r~~~~~~~~~~~~~i~~~~~~~~ls~~~~~~~~~~~~~~~~~rP~~v~~ii~G~D~-~gp~Ly~vd~~G~~~~~ 158 (213)
T cd03753 80 TLIDHARVEAQNHRFTYNEPMTVESVTQAVSDLALQFGEGDDGKKAMSRPFGVALLIAGVDE-NGPQLFHTDPSGTFTRC 158 (213)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhCcccccccccccceEEEEEEEEcC-CCCEEEEECCCCCeecc
Confidence 99999999999999999999999999999999999998743 4699999999999996 79999999999999999
Q ss_pred eEEeecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEE
Q 025897 164 KATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVV 220 (246)
Q Consensus 164 ~~~a~G~g~~~a~~~Le~~~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~~~iei~ii 220 (246)
+++|+|+++++++++|+++| +++|+++||++++++||+.+.++++...++||++|
T Consensus 159 ~~~a~G~~~~~~~~~L~~~~--~~~ls~eeai~l~~~~l~~~~~~~~~~~~~ei~~~ 213 (213)
T cd03753 159 DAKAIGSGSEGAQSSLQEKY--HKDMTLEEAEKLALSILKQVMEEKLNSTNVELATV 213 (213)
T ss_pred cEEEECCCcHHHHHHHHhhc--cCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEC
Confidence 99999999999999999998 67899999999999999998877777778999875
No 18
>KOG0181 consensus 20S proteasome, regulatory subunit alpha type PSMA2/PRE8 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-56 Score=349.75 Aligned_cols=229 Identities=37% Similarity=0.606 Sum_probs=220.9
Q ss_pred CCCcccceeCCCCccchhccHHHHHhccCceEEEEEcCCeEEEEEeccCCcCccccCCceeeEEecCeEEEEEecchHHH
Q 025897 8 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADA 87 (246)
Q Consensus 8 ~yd~~~t~f~p~Gr~~Q~eya~~av~~~G~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~ 87 (246)
+|..++|+|||+|++-|+|||+.|+.+ |.+.|||+-.||||||++++..+.|.+....+|++.|.++|+|.+||+.+|+
T Consensus 5 ~y~fslTtFSpsGKL~QieyAL~Av~~-G~~SvGi~A~nGvVlatekk~~s~L~~~~sv~KV~~i~~~IG~vYSGmgpD~ 83 (233)
T KOG0181|consen 5 GYSFSLTTFSPSGKLVQIEYALTAVVN-GQTSVGIKAANGVVLATEKKDVSPLVDEESVRKVEKITPHIGCVYSGMGPDY 83 (233)
T ss_pred ccceeeEEEcCCCceehHHHHHHHHhC-CCCceeeeecCceEEEeccCCCCccchhhhhhhHhhccCCcceEEecCCCce
Confidence 689999999999999999999999995 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCcceeeceEEe
Q 025897 88 RTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATS 167 (246)
Q Consensus 88 ~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~a 167 (246)
+.+++..|+.++.|...|++++|+..|...++..+|+|||++|.||||+++++||||. ++|.||++||+|++..|+++|
T Consensus 84 RvlV~~~rkiAe~Yy~vY~e~~pt~qlv~~~asvmQEyTqsgGvrPFGvslliaG~~~-~~p~LyQvdPSGsyf~wkatA 162 (233)
T KOG0181|consen 84 RVLVHKSRKIAEQYYRVYGEPIPTTQLVQEVASVMQEYTQSGGVRPFGVSLLIAGWDE-GGPLLYQVDPSGSYFAWKATA 162 (233)
T ss_pred eehhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEeecCC-CceeEEEECCccceeehhhhh
Confidence 9999999999999999999999999999999999999999999999999999999997 799999999999999999999
Q ss_pred ecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEcCCCcEEEcCHHHHHHHHHHh
Q 025897 168 AGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAI 242 (246)
Q Consensus 168 ~G~g~~~a~~~Le~~~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~~~iei~ii~~~~~~~~~l~~~eI~~~l~~i 242 (246)
.|.+...++++|||+| +++|.+++++..|+.+|++..+.....++|||+++..++ |++++++||+.+|.++
T Consensus 163 ~Gkn~v~aktFlEkR~--~edleldd~ihtailtlkE~fege~~~~nieigv~~~~~--F~~lt~~eI~d~l~~l 233 (233)
T KOG0181|consen 163 MGKNYVNAKTFLEKRY--NEDLELDDAIHTAILTLKESFEGEMTAKNIEIGVCGENG--FRRLTPAEIEDYLASL 233 (233)
T ss_pred hccCcchHHHHHHHHh--ccccccchHHHHHHHHHHHHhccccccCceEEEEecCCc--eeecCHHHHHHHHhcC
Confidence 9999999999999998 688999999999999999999888999999999999655 9999999999999764
No 19
>KOG0178 consensus 20S proteasome, regulatory subunit alpha type PSMA4/PRE9 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-54 Score=345.58 Aligned_cols=237 Identities=34% Similarity=0.571 Sum_probs=220.2
Q ss_pred CCCCcccceeCCCCccchhccHHHHHhccCceEEEEEcCCeEEEEEeccCCcCcccc-CCceeeEEecCeEEEEEecchH
Q 025897 7 GGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDH-TSVTHLFPITKYLGLLATGMTA 85 (246)
Q Consensus 7 ~~yd~~~t~f~p~Gr~~Q~eya~~av~~~G~t~vgi~~~dgvvla~d~~~~~~l~~~-~~~~Ki~~i~~~i~~~~sG~~~ 85 (246)
.+||...|+||||||++|||||.+++.+.| |+|||-++||||||++++.+++|++. ...+||++|+++++|+.+|+.+
T Consensus 3 r~ydsrttiFspEGRLyQVEyAmeais~aG-t~iGila~DGvvLa~e~k~t~kll~t~~~~EKiY~l~d~iaC~vaGlt~ 81 (249)
T KOG0178|consen 3 RRYDSRTTIFSPEGRLYQVEYAMEAISHAG-TCIGILASDGVVLAGENKVTSKLLDTSIPMEKIYKLNDNIACAVAGLTS 81 (249)
T ss_pred cCcCCcccccCCCcchHHHHHHHHHHhhhc-ceeEEEecCceEEEeecccchhhhhccccHHHhhhcCCceEEEEecccc
Confidence 368999999999999999999999999755 99999999999999999999998875 4679999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCcceeeceE
Q 025897 86 DARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKA 165 (246)
Q Consensus 86 D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~ 165 (246)
|+..|.+.+|..++.|.++|++++|++.|++.+++..|.|||+.|.|||||++|.+|||+..|.+||+.||+|++..|++
T Consensus 82 DAnvL~n~aRi~AQ~yl~~y~e~iP~eqLv~~lcdiKQayTQygG~RPFGVSfLYaGwd~~~gyqLy~SdPSGny~gWka 161 (249)
T KOG0178|consen 82 DANVLKNYARIIAQRYLFRYGEEIPCEQLVTFLCDIKQAYTQYGGKRPFGVSFLYAGWDDRYGYQLYQSDPSGNYGGWKA 161 (249)
T ss_pred cHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHhhccCcCCCceeeeeeceecCcceEEEecCCCCCccccce
Confidence 99999999999999999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred EeecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhcc-CCCCcEEEEEEEcCCC--cEEEcCHHHHHHHHHHh
Q 025897 166 TSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQED-FKASEIEVGVVSKENP--EFRVLSIEEIDEHLTAI 242 (246)
Q Consensus 166 ~a~G~g~~~a~~~Le~~~~~~~~~s~~ea~~l~~~~l~~~~~~d-~~~~~iei~ii~~~~~--~~~~l~~~eI~~~l~~i 242 (246)
.|+|.+++.|+..|+..|. ...+++++|+.+|++.|...++.. +.+..+|++.++++.. .++.+.++||.++|+++
T Consensus 162 ~ciG~N~~Aa~s~Lkqdyk-dd~~~~~eA~~laikvL~kt~d~~~lt~eklEia~~~k~~~k~v~~i~~~~ev~kll~k~ 240 (249)
T KOG0178|consen 162 TCIGANSGAAQSMLKQDYK-DDENDLEEAKALAIKVLSKTLDSGSLTAEKLEIATITKDCNKTVLKILKKDEVLKLLEKY 240 (249)
T ss_pred eeeccchHHHHHHHHhhhc-cccccHHHHHHHHHHHHHhhcccCCCChhheEEEEEEecCCceEEEecCHHHHHHHHHHh
Confidence 9999999999999999984 445679999999999999988775 5666899999998753 27889999999999988
Q ss_pred hcc
Q 025897 243 SER 245 (246)
Q Consensus 243 ~~~ 245 (246)
.+.
T Consensus 241 ~~~ 243 (249)
T KOG0178|consen 241 HET 243 (249)
T ss_pred hhh
Confidence 653
No 20
>KOG0863 consensus 20S proteasome, regulatory subunit alpha type PSMA1/PRE5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-53 Score=340.45 Aligned_cols=235 Identities=33% Similarity=0.567 Sum_probs=220.2
Q ss_pred CCCCCCCCCCcccceeCCCCccchhccHHHHHhccCceEEEEEcCCeEEEEEeccCCcCccccCCceeeEEecCeEEEEE
Q 025897 1 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLA 80 (246)
Q Consensus 1 ~~~~~~~~yd~~~t~f~p~Gr~~Q~eya~~av~~~G~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~ 80 (246)
|-|+. ||.+.|+|||+||++|||||.+|+++ |+++||+|.++..||++-++..+.|- +.++|||+|++|+++++
T Consensus 1 Mfrnq---yd~d~t~wsPqGrl~QvEya~Eavkq-GsatVGLks~thaVLvAl~r~~seLs--s~QkKi~~iD~h~g~si 74 (264)
T KOG0863|consen 1 MFRNQ---YDNDVTTWSPQGRLHQVEYAMEAVKQ-GSATVGLKSRTHAVLVALKRAQSELS--SHQKKIFKIDDHIGISI 74 (264)
T ss_pred CCccc---ccCceeEECCcceehHHHHHHHHHhc-ccceEeecccceEEEeeeccchhHHH--HhhheeEecccccceEE
Confidence 44554 99999999999999999999999996 99999999999999999998877663 45799999999999999
Q ss_pred ecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCcce
Q 025897 81 TGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHF 160 (246)
Q Consensus 81 sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~ 160 (246)
+|+.+|++.|.+++|.+|..+++.+++++|+..|...|++.+|..||+.+.|||||.++++|||+ .||+||.++|+|++
T Consensus 75 AGLt~Darvl~~Ylr~ec~~~~~~~~r~~pv~rl~~~l~~k~q~~Tq~ygrRpYGVGllv~gYDe-~G~hl~e~~Psg~v 153 (264)
T KOG0863|consen 75 AGLTADARVLSRYLRQECLNSRFIYGRPLPVLRLVEDLGDKAQENTQRYGRRPYGVGLLVAGYDE-SGPHLYEFCPSGNV 153 (264)
T ss_pred eccCcchHHHHHHHHHHHhhhhhccCCcccHHHHHHHHHHHHhhhhhhhCCccccceEEEEeecC-CCceeEEEcCCccE
Confidence 99999999999999999999999999999999999999999999999999999999999999997 79999999999999
Q ss_pred eeceEEeecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhcc--CCCCcEEEEEEEcCCCcEEEcCHHHHHHH
Q 025897 161 FGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQED--FKASEIEVGVVSKENPEFRVLSIEEIDEH 238 (246)
Q Consensus 161 ~~~~~~a~G~g~~~a~~~Le~~~~~~~~~s~~ea~~l~~~~l~~~~~~d--~~~~~iei~ii~~~~~~~~~l~~~eI~~~ 238 (246)
.++++.+||+.+|.++++||++...+++++.||.+..++.||+.....| +...+++|+|+.++.+ |+.++.+++.++
T Consensus 154 ~e~~g~sIGsRSQsARTyLEr~~e~f~~~~~eELI~~gi~Alr~tlp~de~lt~~nvsI~Ivgkd~p-f~~~d~~~~~k~ 232 (264)
T KOG0863|consen 154 FECKGMSIGSRSQSARTYLERNLEEFEDSSPEELIKHGIMALRETLPEDEDLTGENVSIAIVGKDEP-FTILDQKDVAKY 232 (264)
T ss_pred EEEeeeecccchhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCcccccccceeEEEEEeCCCc-eEeecHHHHHHH
Confidence 9999999999999999999999977899999999999999999998854 6666999999999987 999999999988
Q ss_pred HHHhh
Q 025897 239 LTAIS 243 (246)
Q Consensus 239 l~~i~ 243 (246)
+.-..
T Consensus 233 ~~~~~ 237 (264)
T KOG0863|consen 233 VDLFK 237 (264)
T ss_pred HHHhh
Confidence 76543
No 21
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=100.00 E-value=3.6e-46 Score=312.69 Aligned_cols=205 Identities=20% Similarity=0.267 Sum_probs=189.4
Q ss_pred CceEEEEEcCCeEEEEEeccCC-cCccccCCceeeEEecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q 025897 36 GVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVL 114 (246)
Q Consensus 36 G~t~vgi~~~dgvvla~d~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 114 (246)
|+|+|||+++||||||+|++.+ ++++.+++.+|||+|++|++|+++|+.+|++.|.+++|.+++.|+++++++++++.+
T Consensus 2 G~T~igi~~kdgVvlaad~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~l 81 (219)
T TIGR03690 2 GTTIVALTYPGGVLMAGDRRATQGNMIASRDVEKVYPTDEYSAVGIAGTAGLAIELVRLFQVELEHYEKIEGVPLTLDGK 81 (219)
T ss_pred CcEEEEEEECCEEEEEECCccccCcEEEcCCcceEEEcCCcEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 8899999999999999999998 588888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCccceeEEEEEcCC-CCcEEEEECCCc-ceeeceEEeecCChHHHHHHHHhhccCCCCCCHH
Q 025897 115 AKWIADKSQVYTQHAYMRPLGVVAMVLSIDEE-CGPRLFKCDPAG-HFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQ 192 (246)
Q Consensus 115 a~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~-~gp~Ly~id~~G-~~~~~~~~a~G~g~~~a~~~Le~~~~~~~~~s~~ 192 (246)
+++|++.+|.+++ ...|||++++||+|||+. ++|+||.+||+| ++..++++|+|+|+++++++||++| +++||.+
T Consensus 82 a~~ls~~~~~~~~-~~~rp~~v~~iiaG~D~~~~~~~Ly~~Dp~G~~~~~~~~~a~G~g~~~a~~~Le~~~--~~~ms~e 158 (219)
T TIGR03690 82 ANRLAAMVRGNLP-AAMQGLAVVPLLAGYDLDAGAGRIFSYDVTGGRYEERGYHAVGSGSVFAKGALKKLY--SPDLDED 158 (219)
T ss_pred HHHHHHHHHhhhh-hccCCceEEEEEEEECCCCCCcEEEEEeCCCCeeecCCeEEEeccHHHHHHHHHhcC--CCCcCHH
Confidence 9999999988763 458999999999999963 579999999999 5777789999999999999999998 6899999
Q ss_pred HHHHHHHHHHHHhhhccCCCCc--------EEEEEEEcCCCcEEEcCHHHHHHHHHHhhcc
Q 025897 193 ETVQTAISTLQSVLQEDFKASE--------IEVGVVSKENPEFRVLSIEEIDEHLTAISER 245 (246)
Q Consensus 193 ea~~l~~~~l~~~~~~d~~~~~--------iei~ii~~~~~~~~~l~~~eI~~~l~~i~~~ 245 (246)
||++++.+||..+.++|..+++ +||++|++++ |++++++||++++.++.+.
T Consensus 159 eai~l~~~al~~~~~~d~~s~~~~~~~~~~~ei~ii~~~g--~~~l~~~ei~~~~~~~~~~ 217 (219)
T TIGR03690 159 DALRVAVEALYDAADDDSATGGPDLVRGIYPTVVVITADG--ARRVPESELEELARAIVES 217 (219)
T ss_pred HHHHHHHHHHHHHHhcccccCCcccccccccEEEEEccCc--eEEcCHHHHHHHHHHHHhc
Confidence 9999999999999999975542 3999998766 9999999999999998763
No 22
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=100.00 E-value=5e-46 Score=312.64 Aligned_cols=204 Identities=17% Similarity=0.223 Sum_probs=182.9
Q ss_pred hccHHHHHhccCceEEEEEcCCeEEEEEeccCCcCccccCCceeeEEecCeEEEEEecchHHHHHHHHHHHHHHHHHHHH
Q 025897 25 VEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFK 104 (246)
Q Consensus 25 ~eya~~av~~~G~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~ 104 (246)
-|||++|+++ |+|+|||+++||||||+|++. ++.+|||+|++|++|+++|+.+|++.+++.++.+++.|++.
T Consensus 17 ~EYA~kav~~-g~T~VGIk~kdgVVLaaek~~-------~~~~KI~~I~d~ig~~~sG~~~D~~~lv~~~r~~a~~~~~~ 88 (228)
T TIGR03691 17 AELARKGIAR-GRSVVVLTYADGILFVAENPS-------RSLHKISELYDRIGFAAVGKYNEFENLRRAGIRYADMRGYS 88 (228)
T ss_pred HHHHHHHHHc-CCcEEEEEeCCeEEEEEecCC-------CCcCcEEEecCCEEEEEcCCHHHHHHHHHHHHHHHHHHhhh
Confidence 5899999995 999999999999999999973 45789999999999999999999999999999999999999
Q ss_pred hC-CCCCHHHHHHHHHHHHHHHhhccCCCCccceeEEEEEcC-CCCcEEEEECCCcceeece-EEeecCChHHHHHHHHh
Q 025897 105 YG-YEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDE-ECGPRLFKCDPAGHFFGHK-ATSAGLKEQEAINFLEK 181 (246)
Q Consensus 105 ~~-~~~~~~~la~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~-~~gp~Ly~id~~G~~~~~~-~~a~G~g~~~a~~~Le~ 181 (246)
++ .+++++.+++++++.+..++ +++.|||+|++|++|||+ +.||+||.+||+|++.+++ ++|+|++++.++++||+
T Consensus 89 ~~~~~~~v~~la~~~tq~~~~~~-~~~~RP~gvs~Li~G~d~~~~gp~Ly~vDpsG~~~~~~~~~aiG~gs~~a~~~Lek 167 (228)
T TIGR03691 89 YDRRDVTGRGLANAYAQTLGTIF-TEQQKPYEVEICVAEVGETPDQDQLYRITFDGSIVDERGFVVMGGTTEPIATALKE 167 (228)
T ss_pred cCCCCccHHHHHHHHHhhccccc-ccccCcceEEEEEEEEcCCCCCCEEEEECCCCCceeccceEEECCChHHHHHHHHH
Confidence 98 78999999988777776555 456899999999999985 4789999999999999876 89999999999999999
Q ss_pred hccCCCCCCHHHHHHHHHHHHHHhhh--cc-CCCCcEEEEEEEcCC--CcEEEcCHHHHHHHH
Q 025897 182 KMKNDPAFTFQETVQTAISTLQSVLQ--ED-FKASEIEVGVVSKEN--PEFRVLSIEEIDEHL 239 (246)
Q Consensus 182 ~~~~~~~~s~~ea~~l~~~~l~~~~~--~d-~~~~~iei~ii~~~~--~~~~~l~~~eI~~~l 239 (246)
+| +++||++||++++++||..+.+ ++ ++..++||++|++++ +.|++|+++||+++|
T Consensus 168 ~y--~~~ms~eeai~la~~aL~~~~~~~r~~~~~~~iEv~ii~k~~~~~~f~~l~~~ei~~~l 228 (228)
T TIGR03691 168 SY--RDGLSLADALGLAVQALRAGGNGEKRELDAASLEVAVLDRSRPRRAFRRITGEALERLL 228 (228)
T ss_pred hc--CCCCCHHHHHHHHHHHHHHHhccccccCCccceEEEEEeCCCCccceEECCHHHHHhhC
Confidence 98 6799999999999999999964 33 556689999999753 359999999999874
No 23
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1e-45 Score=305.36 Aligned_cols=188 Identities=20% Similarity=0.250 Sum_probs=175.5
Q ss_pred cCceEEEEEcCCeEEEEEeccCC-cCccccCCceeeEEecCeEEEEEecchHHHHHHHHHHHHHHH-HHHHHhCCCCCHH
Q 025897 35 AGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAA-EFRFKYGYEMPVD 112 (246)
Q Consensus 35 ~G~t~vgi~~~dgvvla~d~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~-~~~~~~~~~~~~~ 112 (246)
+|+|+|||+++||||||+|++.+ +.++.+++.+|||+|+++++++++|+.+|++.+.+++|.+++ .++++++++++++
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 80 (197)
T cd03760 1 TGTSVIAIKYKDGVIIAADTLGSYGSLARFKNVERIFKVGDNTLLGASGDYADFQYLKRLLDQLVIDDECLDDGHSLSPK 80 (197)
T ss_pred CCceEEEEEeCCcEEEEEcCcccccceeecCCCCcEEEecCcEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence 48999999999999999999999 889888889999999999999999999999999999999987 5667899999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCcceeeceEEeecCChHHHHHHHHhhccCCCCCCHH
Q 025897 113 VLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQ 192 (246)
Q Consensus 113 ~la~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~a~~~Le~~~~~~~~~s~~ 192 (246)
.+++++++.+ |+++++.|||+|++||+|||+++||+||.+||+|++.+++++|+|+++.+++++||+.|+..++||++
T Consensus 81 ~la~~i~~~~--y~~~~~~rP~~v~~iiaG~D~~~gp~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~ms~e 158 (197)
T cd03760 81 EIHSYLTRVL--YNRRSKMNPLWNTLVVGGVDNEGEPFLGYVDLLGTAYEDPHVATGFGAYLALPLLREAWEKKPDLTEE 158 (197)
T ss_pred HHHHHHHHHH--HHHhhcCCCceEEEEEEEEcCCCCEEEEEEcCCccEEECCEeEEccHHHHHHHHHHhhcCCCCCCCHH
Confidence 9999999986 88888899999999999999757899999999999999999999999999999999998432389999
Q ss_pred HHHHHHHHHHHHhhhccCCCC-cEEEEEEEcCC
Q 025897 193 ETVQTAISTLQSVLQEDFKAS-EIEVGVVSKEN 224 (246)
Q Consensus 193 ea~~l~~~~l~~~~~~d~~~~-~iei~ii~~~~ 224 (246)
||++++++||+.+.+||..++ +++|++|+++|
T Consensus 159 ea~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g 191 (197)
T cd03760 159 EARALIEECMKVLYYRDARSINKYQIAVVTKEG 191 (197)
T ss_pred HHHHHHHHHHHHHHHhccccCCceEEEEECCCC
Confidence 999999999999999997665 89999999987
No 24
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=100.00 E-value=2.3e-45 Score=312.02 Aligned_cols=203 Identities=16% Similarity=0.211 Sum_probs=187.7
Q ss_pred HHhccCceEEEEEcCCeEEEEEeccCC-cCccccCCceeeEEecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCC
Q 025897 31 AVKAAGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEM 109 (246)
Q Consensus 31 av~~~G~t~vgi~~~dgvvla~d~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~ 109 (246)
.+. +|+|+|||+++||||||+|++.+ +.++.+++.+||++|+++++++++|+.+|++.|.+++|.+++.|++++++++
T Consensus 35 ~~~-~G~T~IgIk~kdgVvlAaD~r~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~g~~i 113 (247)
T PTZ00488 35 EFA-HGTTTLAFKYGGGIIIAVDSKATAGPYIASQSVKKVIEINPTLLGTMAGGAADCSFWERELAMQCRLYELRNGELI 113 (247)
T ss_pred ccC-CCceEEEEEeCCEEEEEEecCcccCCEEEcCCcCceEEcCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 455 59999999999999999999988 7888888999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhccCCCCccce--eEEEEEcCCCCcEEEEECCCcceeeceEEeecCChHHHHHHHHhhccCCC
Q 025897 110 PVDVLAKWIADKSQVYTQHAYMRPLGVV--AMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDP 187 (246)
Q Consensus 110 ~~~~la~~l~~~~~~~~~~~~~rP~~v~--~ll~G~d~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~a~~~Le~~~~~~~ 187 (246)
+++.++++|++.++.+ |||+++ +||+|||+ +||+||.+||+|++.+++++|+|+|+.+++++||+.| ++
T Consensus 114 sv~~la~~ls~~l~~~------R~~~~~v~~iiaG~D~-~gp~Ly~vDp~Gs~~~~~~~a~G~gs~~~~~~Le~~~--k~ 184 (247)
T PTZ00488 114 SVAAASKILANIVWNY------KGMGLSMGTMICGWDK-KGPGLFYVDNDGTRLHGNMFSCGSGSTYAYGVLDAGF--KW 184 (247)
T ss_pred CHHHHHHHHHHHHHhc------CCCCeeEEEEEEEEeC-CCCEEEEEcCCcceeecCCEEEccCHHHHHHHHHhcC--cC
Confidence 9999999999998643 455555 79999996 7899999999999999999999999999999999998 67
Q ss_pred CCCHHHHHHHHHHHHHHhhhccCCCC-cEEEEEEEcCCCcEEEcCHHHHHHHHHHhhcc
Q 025897 188 AFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLSIEEIDEHLTAISER 245 (246)
Q Consensus 188 ~~s~~ea~~l~~~~l~~~~~~d~~~~-~iei~ii~~~~~~~~~l~~~eI~~~l~~i~~~ 245 (246)
+||.+||++++++||+.+.+||..++ +++|++|++++ ++.++++||+++++++++.
T Consensus 185 dms~eEai~l~~kal~~~~~Rd~~sg~~~ei~iI~k~g--~~~l~~~ei~~~l~~~~~~ 241 (247)
T PTZ00488 185 DLNDEEAQDLGRRAIYHATFRDAYSGGAINLYHMQKDG--WKKISADDCFDLHQKYAAE 241 (247)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccCCCeEEEEEcCCc--cEECCHHHHHHHHHHHhhh
Confidence 99999999999999999999997665 89999999887 9999999999999998753
No 25
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.2e-45 Score=301.46 Aligned_cols=184 Identities=17% Similarity=0.278 Sum_probs=174.2
Q ss_pred ceEEEEEcCCeEEEEEeccCC-cCccccCCceeeEEecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 025897 37 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 115 (246)
Q Consensus 37 ~t~vgi~~~dgvvla~d~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 115 (246)
+|+|||+++||||||+|++.+ +.++.+++.+|||+|+++++++++|+.+|++.|.+++|.+++.|+++++++++++.++
T Consensus 2 ~t~igi~~~dgVvlaad~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la 81 (193)
T cd03758 2 ETLIGIKGKDFVILAADTSAARSILVLKDDEDKIYKLSDHKLMACSGEAGDRLQFAEYIQKNIQLYKMRNGYELSPKAAA 81 (193)
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEecCcccEEEeCCCeEEEEccchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 589999999999999999997 6778888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCcceeeceEEeecCChHHHHHHHHhhccCCCCCCHHHHH
Q 025897 116 KWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETV 195 (246)
Q Consensus 116 ~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~a~~~Le~~~~~~~~~s~~ea~ 195 (246)
+++++.+|.|++. + |||++++||+|||++.||+||++||+|++.+++++|+|+|+++++++||+.| +++||.+||+
T Consensus 82 ~~l~~~~~~~~~~-~-rP~~~~~li~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~--~~~ms~eeai 157 (193)
T cd03758 82 NFTRRELAESLRS-R-TPYQVNLLLAGYDKVEGPSLYYIDYLGTLVKVPYAAHGYGAYFCLSILDRYY--KPDMTVEEAL 157 (193)
T ss_pred HHHHHHHHHHhhc-C-CCeEEEEEEEEEcCCCCcEEEEECCCcceEECCeeEEeecHHHHHHHHHhcc--CCCCCHHHHH
Confidence 9999999988654 3 8999999999999767899999999999999999999999999999999998 5899999999
Q ss_pred HHHHHHHHHhhhccCCCC-cEEEEEEEcCC
Q 025897 196 QTAISTLQSVLQEDFKAS-EIEVGVVSKEN 224 (246)
Q Consensus 196 ~l~~~~l~~~~~~d~~~~-~iei~ii~~~~ 224 (246)
+++.+||+.+.+||..++ +++|++|+++|
T Consensus 158 ~l~~~a~~~~~~rd~~~~~~i~i~ii~~~g 187 (193)
T cd03758 158 ELMKKCIKELKKRFIINLPNFTVKVVDKDG 187 (193)
T ss_pred HHHHHHHHHHHHhccccCCceEEEEEcCCC
Confidence 999999999999997766 89999999987
No 26
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.9e-45 Score=300.82 Aligned_cols=190 Identities=20% Similarity=0.274 Sum_probs=174.0
Q ss_pred cCceEEEEEcCCeEEEEEeccCCcCccc-cCCceeeEEecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Q 025897 35 AGVTSIGVRGKDSVCVVTQKKVPDKLLD-HTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDV 113 (246)
Q Consensus 35 ~G~t~vgi~~~dgvvla~d~~~~~~l~~-~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 113 (246)
+|+|+|||+++||||||+|++.+..++. .++.+|||+|++|++|+++|+.+|++.+.+.+|.+++.|+++++++++++.
T Consensus 2 ~G~t~igik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 81 (195)
T cd03759 2 NGGAVVAMAGKDCVAIASDLRLGVQQQTVSTDFQKVFRIGDRLYIGLAGLATDVQTLAQKLRFRVNLYRLREEREIKPKT 81 (195)
T ss_pred CCceEEEEEcCCEEEEEEccccccCCEeEecCCCeEEEeCCCEEEEccchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3899999999999999999999877665 457899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCcceeece-EEeecCChHHHHHHHHhhccCCCCCCHH
Q 025897 114 LAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHK-ATSAGLKEQEAINFLEKKMKNDPAFTFQ 192 (246)
Q Consensus 114 la~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~-~~a~G~g~~~a~~~Le~~~~~~~~~s~~ 192 (246)
+++++++.+ |+++ .|||++++||+|||+++||+||.+||+|++.++. ++|+|+|++.++++||+.| +++||.+
T Consensus 82 la~~l~~~l--y~~r--~~P~~v~~ii~G~D~~~~p~Ly~~D~~G~~~~~~~~~a~G~g~~~~~~~Le~~~--~~~~s~~ 155 (195)
T cd03759 82 FSSLISSLL--YEKR--FGPYFVEPVVAGLDPDGKPFICTMDLIGCPSIPSDFVVSGTASEQLYGMCESLW--RPDMEPD 155 (195)
T ss_pred HHHHHHHHH--HHhc--CCCceEEEEEEEEcCCCCEEEEEEcCCCcccccCCEEEEcccHHHHHHHHHhcc--CCCCCHH
Confidence 999999998 5553 5799999999999976789999999999998887 9999999999999999998 6899999
Q ss_pred HHHHHHHHHHHHhhhccCCCC-cEEEEEEEcCCCcEEEc
Q 025897 193 ETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVL 230 (246)
Q Consensus 193 ea~~l~~~~l~~~~~~d~~~~-~iei~ii~~~~~~~~~l 230 (246)
||++++++||+.+.+||..++ +++|++|+++|.+.+.|
T Consensus 156 ea~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g~~~~~~ 194 (195)
T cd03759 156 ELFETISQALLSAVDRDALSGWGAVVYIITKDKVTTRTL 194 (195)
T ss_pred HHHHHHHHHHHHHHhhCcccCCceEEEEEcCCcEEEEec
Confidence 999999999999999997665 89999999998655443
No 27
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.2e-44 Score=294.35 Aligned_cols=185 Identities=17% Similarity=0.219 Sum_probs=173.2
Q ss_pred ceEEEEEcCCeEEEEEeccCCc-CccccCCceeeEEecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 025897 37 VTSIGVRGKDSVCVVTQKKVPD-KLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 115 (246)
Q Consensus 37 ~t~vgi~~~dgvvla~d~~~~~-~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 115 (246)
+|+|||+++||||||+|++.+. .++.+++.+|||+|++|++++++|+.+|++.|.+++|.+++.|+++++++++++.++
T Consensus 1 tT~igi~~kdgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i~~~~la 80 (188)
T cd03761 1 TTTLAFIFQGGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCQYWERVLGRECRLYELRNKERISVAAAS 80 (188)
T ss_pred CcEEEEEECCEEEEEEcCCccCCcEEEcCCcceEEEccCcEEEEeCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 5899999999999999999985 677778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCcceeeceEEeecCChHHHHHHHHhhccCCCCCCHHHHH
Q 025897 116 KWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETV 195 (246)
Q Consensus 116 ~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~a~~~Le~~~~~~~~~s~~ea~ 195 (246)
+++++.+|.++ ..||++++||+|||+ +||+||.+||+|++.+++++|+|+++++++++||++| +++||.+||+
T Consensus 81 ~~ls~~l~~~~----~~~~~v~~li~G~D~-~g~~L~~~dp~G~~~~~~~~a~G~g~~~~~~~Le~~~--~~~~s~eea~ 153 (188)
T cd03761 81 KLLSNMLYQYK----GMGLSMGTMICGWDK-TGPGLYYVDSDGTRLKGDLFSVGSGSTYAYGVLDSGY--RYDLSVEEAY 153 (188)
T ss_pred HHHHHHHHhcC----CCCeEEEEEEEEEeC-CCCEEEEEcCCceEEEcCeEEEcccHHHHHHHHHhcC--CCCCCHHHHH
Confidence 99999998774 348999999999996 7999999999999999999999999999999999998 6899999999
Q ss_pred HHHHHHHHHhhhccCCCC-cEEEEEEEcCCCcEEEc
Q 025897 196 QTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVL 230 (246)
Q Consensus 196 ~l~~~~l~~~~~~d~~~~-~iei~ii~~~~~~~~~l 230 (246)
+++.+||+.+.+||..++ +++|++|+++| ++++
T Consensus 154 ~l~~~~l~~~~~rd~~sg~~~~v~ii~~~g--~~~~ 187 (188)
T cd03761 154 DLARRAIYHATHRDAYSGGNVNLYHVREDG--WRKI 187 (188)
T ss_pred HHHHHHHHHHHHhcccCCCCeEEEEEcCCc--eEEc
Confidence 999999999999997766 79999999887 5554
No 28
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=8.1e-44 Score=297.13 Aligned_cols=192 Identities=17% Similarity=0.323 Sum_probs=174.9
Q ss_pred ccCceEEEEEcCCeEEEEEeccCCcCc-cccCCceeeEEecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Q 025897 34 AAGVTSIGVRGKDSVCVVTQKKVPDKL-LDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVD 112 (246)
Q Consensus 34 ~~G~t~vgi~~~dgvvla~d~~~~~~l-~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~ 112 (246)
++|+|+|||+++||||||+|++.+.++ +..++.+||++|+++++|+++|+.+|++.+.+.+|.+++.|+++++++++++
T Consensus 6 ~~G~Tvigik~~dgVvlaaD~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~i~~~ 85 (212)
T cd03757 6 DNGGTVLAIAGNDFAVIAGDTRLSEGYSILSRDSPKIFKLTDKCVLGSSGFQADILALTKRLKARIKMYKYSHNKEMSTE 85 (212)
T ss_pred CCCccEEEEEcCCEEEEEECCccccCCEeEeCCCCeEEEcCCCEEEEccchHHHHHHHHHHHHHHHHHHhHHhCCCCCHH
Confidence 359999999999999999999998555 5567889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCcceeeceEEeecCChHHHHHHHHhhcc-------C
Q 025897 113 VLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMK-------N 185 (246)
Q Consensus 113 ~la~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~a~~~Le~~~~-------~ 185 (246)
.+++++++.+ |.+ +.|||++++||+|||++++|+||.+||+|++.+++++|+|+|+.+++++||+.|+ +
T Consensus 86 ~la~~ls~~l--y~~--R~~P~~~~~iiaG~D~~~~p~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~ 161 (212)
T cd03757 86 AIAQLLSTIL--YSR--RFFPYYVFNILAGIDEEGKGVVYSYDPVGSYERETYSAGGSASSLIQPLLDNQVGRKNQNNVE 161 (212)
T ss_pred HHHHHHHHHH--Hhh--cCCCeEEEEEEEEEcCCCCEEEEEEcCccCeeecCEEEEeecHHHHHHHHHHHHHhhccCcCC
Confidence 9999999998 443 3579999999999997677999999999999999999999999999999999984 2
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhccCCCC-cEEEEEEEcCCCcEEE
Q 025897 186 DPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRV 229 (246)
Q Consensus 186 ~~~~s~~ea~~l~~~~l~~~~~~d~~~~-~iei~ii~~~~~~~~~ 229 (246)
+++||++||++++++||+.+.+||+.++ +++|++|+++|.+.+.
T Consensus 162 ~~~ms~eea~~l~~~~l~~~~~rd~~sg~~i~i~iit~~g~~~~~ 206 (212)
T cd03757 162 RTPLSLEEAVSLVKDAFTSAAERDIYTGDSLEIVIITKDGIEEET 206 (212)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCcccCCCEEEEEEcCCCEEEEe
Confidence 4899999999999999999999997666 7999999999864433
No 29
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=2.4e-43 Score=288.49 Aligned_cols=182 Identities=26% Similarity=0.469 Sum_probs=172.9
Q ss_pred CceEEEEEcCCeEEEEEeccCC-cCccccCCceeeEEecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q 025897 36 GVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVL 114 (246)
Q Consensus 36 G~t~vgi~~~dgvvla~d~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 114 (246)
|+|+|||+++||||||+|++.+ +.++.+++.+|||+|+++++++++|+.+|++.+.++++.+++.|+..++++++++.+
T Consensus 1 G~t~igi~~~dgVvla~d~~~~~~~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
T TIGR03634 1 GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRILKAEAKLYELRRGRPMSVKAL 80 (185)
T ss_pred CCcEEEEEeCCEEEEEEcCcccCCCEEecCCcccEEEcCCCEEEEcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 7899999999999999999988 788888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCcceeeceEEeecCChHHHHHHHHhhccCCCCCCHHHH
Q 025897 115 AKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQET 194 (246)
Q Consensus 115 a~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~a~~~Le~~~~~~~~~s~~ea 194 (246)
++++++.++.+ +.|||++++||+|||+ +||+||.+||+|++.+++++|+|+++.+++++||+.| +++||++||
T Consensus 81 a~~l~~~~~~~----~~rP~~v~~ivaG~d~-~g~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~--~~~~s~~ea 153 (185)
T TIGR03634 81 ATLLSNILNSN----RFFPFIVQLLVGGVDE-EGPHLYSLDPAGGIIEDDYTATGSGSPVAYGVLEDEY--REDMSVEEA 153 (185)
T ss_pred HHHHHHHHHhc----CCCCeEEEEEEEEEeC-CCCEEEEECCCCCeEECCEEEEcCcHHHHHHHHHhcC--CCCCCHHHH
Confidence 99999999754 6789999999999997 6899999999999999999999999999999999998 589999999
Q ss_pred HHHHHHHHHHhhhccCCCC-cEEEEEEEcCC
Q 025897 195 VQTAISTLQSVLQEDFKAS-EIEVGVVSKEN 224 (246)
Q Consensus 195 ~~l~~~~l~~~~~~d~~~~-~iei~ii~~~~ 224 (246)
++++++||+.+.++|..++ +++|++|+++|
T Consensus 154 ~~l~~~~l~~~~~r~~~~~~~~~v~ii~~~g 184 (185)
T TIGR03634 154 KKLAVRAIKSAIERDVASGNGIDVAVITKDG 184 (185)
T ss_pred HHHHHHHHHHHHHhcccCCCCEEEEEEcCCC
Confidence 9999999999999997766 79999999886
No 30
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.7e-43 Score=296.51 Aligned_cols=186 Identities=11% Similarity=0.203 Sum_probs=169.4
Q ss_pred ceEEEEEcCCeEEEEEeccCCcCccccCCceeeEEec----CeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCC-CCCH
Q 025897 37 VTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPIT----KYLGLLATGMTADARTLVQQARYEAAEFRFKYGY-EMPV 111 (246)
Q Consensus 37 ~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~Ki~~i~----~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~-~~~~ 111 (246)
+-+|||+++||||||+|++.+.+++..++.+||++|+ +|++|++||+.+|++.+++++|.+++.|++++++ ++++
T Consensus 1 ~~~vGIk~kdGVVLaadkr~~~~l~~~~~~~KI~~I~~~~d~~I~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~v 80 (236)
T cd03765 1 TYCLGIKLDAGLVFASDSRTNAGVDNISTYRKMFVFSVPGERVIVLLTAGNLATTQAVISLLQRDLEDPEETNLLNAPTM 80 (236)
T ss_pred CeEEEEEeCCeEEEEEccCccCCCccccccceEEEecCCCCCEEEEEcCCcHHHHHHHHHHHHHHHHhhHHhhCCCCCCH
Confidence 3589999999999999999987777666789999998 8999999999999999999999999999999999 8999
Q ss_pred HHHHHHHHHHHHH-HhhccC-----CCCccceeEEEEEcCCCCcEEEEECCCcceeec----eEEeecCChHHHHHHHHh
Q 025897 112 DVLAKWIADKSQV-YTQHAY-----MRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGH----KATSAGLKEQEAINFLEK 181 (246)
Q Consensus 112 ~~la~~l~~~~~~-~~~~~~-----~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~----~~~a~G~g~~~a~~~Le~ 181 (246)
+.+|+++++.++. ++|+.+ .|||+|++||+|||++.||+||++||+|++.++ +++|+|. +++++++||+
T Consensus 81 ~~la~~i~~~l~~~~~q~~~~~~~~~rp~gvslIigG~D~~~Gp~LY~idpsG~~~e~~a~~~~~AiG~-~~~a~~~Lek 159 (236)
T cd03765 81 FDAARYVGETLREVQEQDREALKKAGIDFSASFILGGQIKGEEPRLFLIYPQGNFIEATPDTPFLQIGE-TKYGKPILDR 159 (236)
T ss_pred HHHHHHHHHHHHHHHhhcccccccCCcceEEEEEEEeEECCCCCEEEEECCCCCEEeecCCCceeeeCC-chhhHHHHHH
Confidence 9999999998654 455543 489999999999996678999999999999998 4589996 6999999999
Q ss_pred hccCCCCCCHHHHHHHHHHHHHHhhhccCCCC-cEEEEEEEcCCC
Q 025897 182 KMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENP 225 (246)
Q Consensus 182 ~~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~~-~iei~ii~~~~~ 225 (246)
+| +++||++||++++++||..++.+|..++ +|+|++|+++|.
T Consensus 160 ~y--k~~ms~eeai~la~~al~~a~~rd~~sg~~iev~vI~k~G~ 202 (236)
T cd03765 160 VI--TPDTSLEDAAKCALVSMDSTMRSNLSVGPPLDLLVYERDSL 202 (236)
T ss_pred hc--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEECCCe
Confidence 98 6799999999999999999999997776 799999999975
No 31
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.1e-42 Score=285.34 Aligned_cols=186 Identities=25% Similarity=0.431 Sum_probs=174.8
Q ss_pred ceEEEEEcCCeEEEEEeccCC-cCccccCCceeeEEecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 025897 37 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 115 (246)
Q Consensus 37 ~t~vgi~~~dgvvla~d~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 115 (246)
+|+|||+++||||||+|++.+ +.++.+++.+||++|+++++++++|+.+|++.|.+.++.+++.|++.++++++++.++
T Consensus 1 tt~iai~~~dgvvia~d~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (188)
T cd03764 1 TTTVGIVCKDGVVLAADKRASMGNFIASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRILKAEARLYELRRGRPMSIKALA 80 (188)
T ss_pred CcEEEEEeCCEEEEEEccccccCCEEecCCcccEEEccCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 589999999999999999988 6888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCcceeeceEEeecCChHHHHHHHHhhccCCCCCCHHHHH
Q 025897 116 KWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETV 195 (246)
Q Consensus 116 ~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~a~~~Le~~~~~~~~~s~~ea~ 195 (246)
+++++.++.+ +.|||+|++||||||+ ++|+||.+||+|++.+++++|+|+++++++++||+.| +++|+++||+
T Consensus 81 ~~i~~~~~~~----~~~P~~~~~lvaG~d~-~~~~ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~~--~~~~~~~ea~ 153 (188)
T cd03764 81 TLLSNILNSS----KYFPYIVQLLIGGVDE-EGPHLYSLDPLGSIIEDKYTATGSGSPYAYGVLEDEY--KEDMTVEEAK 153 (188)
T ss_pred HHHHHHHHhc----CCCCcEEEEEEEEEeC-CCCEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHhcC--CCCCCHHHHH
Confidence 9999999754 5789999999999997 7899999999999999999999999999999999998 6899999999
Q ss_pred HHHHHHHHHhhhccCCCC-cEEEEEEEcCCCcEEEcC
Q 025897 196 QTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLS 231 (246)
Q Consensus 196 ~l~~~~l~~~~~~d~~~~-~iei~ii~~~~~~~~~l~ 231 (246)
+++++||+.+.+||+.++ +++|++|+++| ++.++
T Consensus 154 ~l~~~~l~~~~~rd~~~~~~i~i~iv~~~g--~~~~~ 188 (188)
T cd03764 154 KLAIRAIKSAIERDSASGDGIDVVVITKDG--YKELE 188 (188)
T ss_pred HHHHHHHHHHHhhcCCCCCcEEEEEECCCC--eEeCC
Confidence 999999999999997666 79999999887 77653
No 32
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.2e-42 Score=283.51 Aligned_cols=182 Identities=15% Similarity=0.226 Sum_probs=170.8
Q ss_pred ceEEEEEcCCeEEEEEeccCC-cCccccCCceeeEEecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 025897 37 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 115 (246)
Q Consensus 37 ~t~vgi~~~dgvvla~d~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 115 (246)
+|+|||+++||||||+|++.+ +.++.+++.+||++|+++++|+++|+.+|++.|.+.++.+++.|+++++++++++.++
T Consensus 1 ~t~igi~~~dgVvla~D~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~~a 80 (188)
T cd03762 1 TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQLHDRIYCCRSGSAADTQAIADYVRYYLDMHSIELGEPPLVKTAA 80 (188)
T ss_pred CeEEEEEECCeEEEEEcccccCCceEEcCCcccEEEccCCEEEEecccHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHH
Confidence 589999999999999999998 5777778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCcceeeceEEeecCChHHHHHHHHhhccCCCCCCHHHHH
Q 025897 116 KWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETV 195 (246)
Q Consensus 116 ~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~a~~~Le~~~~~~~~~s~~ea~ 195 (246)
+++++.++.+ .|||++++||||||+++||+||.+||.|++.+++++++|+++.+++++||+.| +++||++||+
T Consensus 81 ~~l~~~~~~~-----~~~~~~~~ii~G~d~~~gp~ly~~d~~G~~~~~~~~~~G~g~~~~~~~Le~~~--~~~~s~~ea~ 153 (188)
T cd03762 81 SLFKNLCYNY-----KEMLSAGIIVAGWDEQNGGQVYSIPLGGMLIRQPFAIGGSGSTYIYGYVDANY--KPGMTLEECI 153 (188)
T ss_pred HHHHHHHHhc-----cccceeeEEEEEEcCCCCcEEEEECCCCCEEecCEEEEcccHHHHHHHHHhcC--CCCCCHHHHH
Confidence 9999998654 36899999999999767899999999999999999999999999999999998 6899999999
Q ss_pred HHHHHHHHHhhhccCCCC-cEEEEEEEcCCC
Q 025897 196 QTAISTLQSVLQEDFKAS-EIEVGVVSKENP 225 (246)
Q Consensus 196 ~l~~~~l~~~~~~d~~~~-~iei~ii~~~~~ 225 (246)
+++++||+.+.+||+.++ +++|++|++++.
T Consensus 154 ~l~~~al~~~~~rd~~~~~~~~i~~i~~~g~ 184 (188)
T cd03762 154 KFVKNALSLAMSRDGSSGGVIRLVIITKDGV 184 (188)
T ss_pred HHHHHHHHHHHHhccccCCCEEEEEECCCCE
Confidence 999999999999997766 799999999874
No 33
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.2e-42 Score=282.78 Aligned_cols=181 Identities=17% Similarity=0.258 Sum_probs=169.5
Q ss_pred ceEEEEEcCCeEEEEEeccCC-cCccccCCceeeEEecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 025897 37 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 115 (246)
Q Consensus 37 ~t~vgi~~~dgvvla~d~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 115 (246)
+|+|||+++||||||+|++.+ +.++..++.+|||+|+++++|+++|+.+|++.+.+.+|.+++.|+++++++++++.++
T Consensus 1 tt~igi~~~dgvvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (189)
T cd03763 1 TTIVGVVFKDGVVLGADTRATEGPIVADKNCEKIHYIAPNIYCCGAGTAADTEAVTNMISSNLELHRLNTGRKPRVVTAL 80 (189)
T ss_pred CeEEEEEECCeEEEEEcCCcccCceEEcCCccceEEecCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 589999999999999999998 4667777889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCcceeeceEEeecCChHHHHHHHHhhccCCCCCCHHHHH
Q 025897 116 KWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETV 195 (246)
Q Consensus 116 ~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~a~~~Le~~~~~~~~~s~~ea~ 195 (246)
+++++.++.|. .||+|++||||||+ +||+||.+||.|++.+++++|+|+++.+++++||++| +|+||++||+
T Consensus 81 ~~l~~~l~~~~-----~p~~v~~ivaG~d~-~g~~ly~~d~~G~~~~~~~~a~G~~~~~~~~~L~~~~--~~~ls~~ea~ 152 (189)
T cd03763 81 TMLKQHLFRYQ-----GHIGAALVLGGVDY-TGPHLYSIYPHGSTDKLPFVTMGSGSLAAMSVLEDRY--KPDMTEEEAK 152 (189)
T ss_pred HHHHHHHHHcC-----CccceeEEEEeEcC-CCCEEEEECCCCCEEecCEEEEcCCHHHHHHHHHhhc--CCCCCHHHHH
Confidence 99999987552 39999999999996 6899999999999999999999999999999999998 6899999999
Q ss_pred HHHHHHHHHhhhccCCCC-cEEEEEEEcCCC
Q 025897 196 QTAISTLQSVLQEDFKAS-EIEVGVVSKENP 225 (246)
Q Consensus 196 ~l~~~~l~~~~~~d~~~~-~iei~ii~~~~~ 225 (246)
+++++||+.+.+||+.++ +++|++|+++|.
T Consensus 153 ~l~~~~l~~~~~rd~~~~~~~~v~ii~~~g~ 183 (189)
T cd03763 153 KLVCEAIEAGIFNDLGSGSNVDLCVITKDGV 183 (189)
T ss_pred HHHHHHHHHHHHhcCcCCCceEEEEEcCCcE
Confidence 999999999999997665 799999999883
No 34
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=100.00 E-value=1.2e-41 Score=279.05 Aligned_cols=186 Identities=33% Similarity=0.565 Sum_probs=173.3
Q ss_pred HhccCceEEEEEcCCeEEEEEeccCC-cCcc-ccCCceeeEEecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCC
Q 025897 32 VKAAGVTSIGVRGKDSVCVVTQKKVP-DKLL-DHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEM 109 (246)
Q Consensus 32 v~~~G~t~vgi~~~dgvvla~d~~~~-~~l~-~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~ 109 (246)
|+ +|+|+|||+++||||||+|++.+ +..+ .++..+|||+|+++++++++|+.+|++.+.++++.++..|++.+++++
T Consensus 1 v~-~G~t~vgi~~~dgvvla~d~~~~~g~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~ 79 (190)
T PF00227_consen 1 VN-NGTTVVGIKGKDGVVLAADKRISYGSKLRSPNTVDKIFKINDNIIIGFSGLTADFQYLIRRLREEAQEYRFSYGRPI 79 (190)
T ss_dssp HH-TSBEEEEEEESSEEEEEEEEEEEETTEEEESSTSSSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGT
T ss_pred CC-CCeEEEEEEECCEEEEEEccccccccccccccccceeeeccCcceeeccccccchHHHHhhhcccchhhhhccCccc
Confidence 34 59999999999999999999988 4444 455579999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCcceeec-eEEeecCChHHHHHHHHhhccCCCC
Q 025897 110 PVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGH-KATSAGLKEQEAINFLEKKMKNDPA 188 (246)
Q Consensus 110 ~~~~la~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~-~~~a~G~g~~~a~~~Le~~~~~~~~ 188 (246)
+++.+++.++..++.++++.+.||+++++|++|||++++|+||.+||+|++.++ +++|+|+|+++++++|++.| +++
T Consensus 80 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~~li~G~d~~~~~~l~~vd~~G~~~~~~~~~aiG~g~~~~~~~l~~~~--~~~ 157 (190)
T PF00227_consen 80 SPEYLAKAIASLIQNYTYRSGRRPYGVSLLIAGYDEDGGPQLYSVDPSGSYIECKRFAAIGSGSQFAQPILEKLY--KPD 157 (190)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTSTTSEEEEEEEEETTTEEEEEEEETTSEEEEBSSEEEESTTHHHHHHHHHHHH--TTT
T ss_pred cchhhhhhhHHHHhhhcccccccCccccceeeeeccccccceeeeccccccccccccccchhcchhhhHHHHhhc--cCC
Confidence 999999999999999999989999999999999998666999999999999999 69999999999999999999 689
Q ss_pred CCHHHHHHHHHHHHHHhhhccCCCC-cEEEEEE
Q 025897 189 FTFQETVQTAISTLQSVLQEDFKAS-EIEVGVV 220 (246)
Q Consensus 189 ~s~~ea~~l~~~~l~~~~~~d~~~~-~iei~ii 220 (246)
||++||++++++||+.+.++|..++ +++|++|
T Consensus 158 ~~~~ea~~~~~~~l~~~~~~d~~~~~~~~v~vi 190 (190)
T PF00227_consen 158 LSLEEAIELALKALKEAIDRDILSGDNIEVAVI 190 (190)
T ss_dssp SSHHHHHHHHHHHHHHHHHHBTTSTSEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHhhCCccCCeEEEEEC
Confidence 9999999999999999999986655 8999986
No 35
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5.6e-41 Score=275.20 Aligned_cols=183 Identities=22% Similarity=0.405 Sum_probs=170.6
Q ss_pred ceEEEEEcCCeEEEEEeccCCcCccc-cCCceeeEEecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 025897 37 VTSIGVRGKDSVCVVTQKKVPDKLLD-HTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 115 (246)
Q Consensus 37 ~t~vgi~~~dgvvla~d~~~~~~l~~-~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 115 (246)
+|+|||+++||||||+|++.+..+.. .+..+|||+|+++++++++|+.+|++.+.++++.++..|+..++++++++.++
T Consensus 1 tt~i~i~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (189)
T cd01912 1 TTIVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKISDNILLGTAGSAADTQALTRLLKRNLRLYELRNGRELSVKAAA 80 (189)
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEEcCCcCcEEEccCCEEEEccccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 58999999999999999999855544 78899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCcceeeceEEeecCChHHHHHHHHhhccCCCCCCHHHHH
Q 025897 116 KWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETV 195 (246)
Q Consensus 116 ~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~a~~~Le~~~~~~~~~s~~ea~ 195 (246)
+++++.++.+++ |||++++||+|+|++++|+||.+||+|++.+++++|+|+++++++++||+.| +++||++||+
T Consensus 81 ~~l~~~~~~~~~----~P~~~~~iv~G~d~~~~~~l~~id~~G~~~~~~~~a~G~~~~~~~~~Le~~~--~~~~s~~ea~ 154 (189)
T cd01912 81 NLLSNILYSYRG----FPYYVSLIVGGVDKGGGPFLYYVDPLGSLIEAPFVATGSGSKYAYGILDRGY--KPDMTLEEAV 154 (189)
T ss_pred HHHHHHHHhcCC----CCeEEEEEEEEEcCCCCeEEEEECCCCCeEecCEEEEcccHHHHHHHHHhcc--CCCCCHHHHH
Confidence 999999966532 8999999999999767899999999999999999999999999999999998 6889999999
Q ss_pred HHHHHHHHHhhhccCCCC-cEEEEEEEcCCC
Q 025897 196 QTAISTLQSVLQEDFKAS-EIEVGVVSKENP 225 (246)
Q Consensus 196 ~l~~~~l~~~~~~d~~~~-~iei~ii~~~~~ 225 (246)
+++.+||+.+.++|+.++ +++|++|+++|.
T Consensus 155 ~~~~~~l~~~~~~d~~~~~~~~v~vi~~~g~ 185 (189)
T cd01912 155 ELVKKAIDSAIERDLSSGGGVDVAVITKDGV 185 (189)
T ss_pred HHHHHHHHHHHHhcCccCCcEEEEEECCCCE
Confidence 999999999999987665 799999999873
No 36
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=100.00 E-value=2.8e-40 Score=269.19 Aligned_cols=180 Identities=40% Similarity=0.676 Sum_probs=168.3
Q ss_pred ceEEEEEcCCeEEEEEeccCCcCccc-cCCceeeEEecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 025897 37 VTSIGVRGKDSVCVVTQKKVPDKLLD-HTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 115 (246)
Q Consensus 37 ~t~vgi~~~dgvvla~d~~~~~~l~~-~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 115 (246)
+|+|||+++||||||+|++.+..+.. .++.+|||+|+++++++++|+.+|++.+.+.+++++..|+++++++++++.++
T Consensus 1 tt~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (182)
T cd01906 1 TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLRKEAQLYRLRYGEPIPVEALA 80 (182)
T ss_pred CcEEEEEeCCEEEEEEecccCCcCeecCCCcceEEEECCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 58999999999999999999855443 77889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCcceeeceEEeecCChHHHHHHHHhhccCCCCCCHHHHH
Q 025897 116 KWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETV 195 (246)
Q Consensus 116 ~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~a~~~Le~~~~~~~~~s~~ea~ 195 (246)
+++++.++.++++ .|||++++||+|+|++++|+||.+||+|++.+++++|+|+++++++++||+.| +++||++||+
T Consensus 81 ~~l~~~~~~~~~~--~~p~~~~~lv~G~d~~~~~~Ly~id~~G~~~~~~~~a~G~g~~~~~~~L~~~~--~~~~s~~ea~ 156 (182)
T cd01906 81 KLLANLLYEYTQS--LRPLGVSLLVAGVDEEGGPQLYSVDPSGSYIEYKATAIGSGSQYALGILEKLY--KPDMTLEEAI 156 (182)
T ss_pred HHHHHHHHHhCCC--ccChheEEEEEEEeCCCCcEEEEECCCCCEeeccEEEECCCcHHHHHHHHHHc--cCCCCHHHHH
Confidence 9999999988765 78999999999999767999999999999999999999999999999999998 5789999999
Q ss_pred HHHHHHHHHhhhccCCCC-cEEEEEE
Q 025897 196 QTAISTLQSVLQEDFKAS-EIEVGVV 220 (246)
Q Consensus 196 ~l~~~~l~~~~~~d~~~~-~iei~ii 220 (246)
+++++||+.+.++|..++ +++|++|
T Consensus 157 ~l~~~~l~~~~~~~~~~~~~~~i~ii 182 (182)
T cd01906 157 ELALKALKSALERDLYSGGNIEVAVI 182 (182)
T ss_pred HHHHHHHHHHHcccCCCCCCEEEEEC
Confidence 999999999999998655 7999875
No 37
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-37 Score=244.39 Aligned_cols=188 Identities=16% Similarity=0.275 Sum_probs=175.8
Q ss_pred eEEEEEcCCeEEEEEeccCC-cCccccCCceeeEEecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Q 025897 38 TSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAK 116 (246)
Q Consensus 38 t~vgi~~~dgvvla~d~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~ 116 (246)
+++||++.|+|++|+|+... +-++.+++.+|++.|++++.|+++|..+|+.++.+++.+.++.|+.++|.+++|..+|+
T Consensus 3 ~llGIkg~dfvilAsDt~~~~si~~~k~~~dK~~~ls~~~lm~~~Ge~GDt~qF~eyi~~Ni~LYkirnGyeLSp~~aah 82 (200)
T KOG0177|consen 3 TLLGIKGPDFVILASDTSAARSILVLKDDHDKIHRLSDHILMATVGEAGDTVQFTEYIQKNIQLYKIRNGYELSPSAAAH 82 (200)
T ss_pred eEEEeecCCEEEEeecchhhcceEEecccccceEEeccceeeeeecCCCceehHHHHHHhhhhHHhhhcCCcCCHHHHHH
Confidence 79999999999999999877 67777889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCcceeeceEEeecCChHHHHHHHHhhccCCCCCCHHHHHH
Q 025897 117 WIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQ 196 (246)
Q Consensus 117 ~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~a~~~Le~~~~~~~~~s~~ea~~ 196 (246)
++++.++++.. ..+||.|++|+||+|++.||.||++|..|+..+.+++++|.++.++.++|++.| +|+||.+||++
T Consensus 83 FtR~~La~~LR--sr~~yqV~~LvaGYd~~~gp~L~~iDyla~~~~vpy~~hGy~~~f~~sIlDr~Y--~pdmt~eea~~ 158 (200)
T KOG0177|consen 83 FTRRELAESLR--SRTPYQVNILVAGYDPEEGPELYYIDYLATLVSVPYAAHGYGSYFCLSILDRYY--KPDMTIEEALD 158 (200)
T ss_pred HHHHHHHHHHh--cCCCceEEEEEeccCCCCCCceeeehhhhhcccCCcccccchhhhhHHHHHhhh--CCCCCHHHHHH
Confidence 99999998853 357999999999999989999999999999999999999999999999999998 79999999999
Q ss_pred HHHHHHHHhhhcc-CCCCcEEEEEEEcCCCcEEEcC
Q 025897 197 TAISTLQSVLQED-FKASEIEVGVVSKENPEFRVLS 231 (246)
Q Consensus 197 l~~~~l~~~~~~d-~~~~~iei~ii~~~~~~~~~l~ 231 (246)
+..+|+.++.+|- ++..+|.|.+|+++| .+.++
T Consensus 159 lmkKCv~El~kRlvin~~~f~v~IVdkdG--ir~~~ 192 (200)
T KOG0177|consen 159 LMKKCVLELKKRLVINLPGFIVKIVDKDG--IRKLD 192 (200)
T ss_pred HHHHHHHHHHHhcccCCCCcEEEEEcCCC--ceecc
Confidence 9999999999885 566799999999999 45443
No 38
>KOG0179 consensus 20S proteasome, regulatory subunit beta type PSMB1/PRE7 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-35 Score=235.63 Aligned_cols=197 Identities=17% Similarity=0.329 Sum_probs=179.1
Q ss_pred HHhccCceEEEEEcCCeEEEEEeccCC-cCccccCCceeeEEecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCC
Q 025897 31 AVKAAGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEM 109 (246)
Q Consensus 31 av~~~G~t~vgi~~~dgvvla~d~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~ 109 (246)
+...+|+|+|||.+.|++|+|+|+|.+ +..+..+...|||+++|+++++.||+++|+..|.+.++.....|++.++..|
T Consensus 24 PY~~NGGT~vaIaG~dFavvA~DTR~s~gy~I~sR~~~Ki~~l~D~~vl~~sGF~aD~l~L~k~i~~r~~~Y~~~h~k~m 103 (235)
T KOG0179|consen 24 PYEDNGGTTVAIAGEDFAVVAGDTRMSSGYNINSRDQSKIFKLGDNIVLGSSGFYADTLALVKVIKSRIKQYEHDHNKKM 103 (235)
T ss_pred ccccCCceEEEEcCCceEEEecccccccceeeeccccchheeccCceEEecccchhhHHHHHHHHHHHHHHHhhcccccc
Confidence 334468899999999999999999988 5667788999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCcceeeceEEeecCChHHHHHHHHhhcc-----
Q 025897 110 PVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMK----- 184 (246)
Q Consensus 110 ~~~~la~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~a~~~Le~~~~----- 184 (246)
++..+|+.|+..+ | ..++.||.+..+|+|+|+++.+.+|+.||.|++.+..+.|-|+++..++++|+....
T Consensus 104 s~~s~A~lls~~L--Y--~kRFFPYYv~~ilaGiDeeGKG~VySyDPvGsyer~~~~AgGsa~~mI~PfLDnQi~~kn~~ 179 (235)
T KOG0179|consen 104 SIHSAAQLLSTIL--Y--SKRFFPYYVFNILAGIDEEGKGAVYSYDPVGSYERVTCRAGGSAASMIQPFLDNQIGHKNQN 179 (235)
T ss_pred cHHHHHHHHHHHH--h--hcccccceeeeeeecccccCceeEEeecCCcceeeeeeecCCcchhhhhhhhhhhccCcCcc
Confidence 9999999999999 5 346789999999999999888999999999999999999999999999999998753
Q ss_pred ----CCCCCCHHHHHHHHHHHHHHhhhccCCCC-cEEEEEEEcCCCcEEEcC
Q 025897 185 ----NDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLS 231 (246)
Q Consensus 185 ----~~~~~s~~ea~~l~~~~l~~~~~~d~~~~-~iei~ii~~~~~~~~~l~ 231 (246)
.++.+|+|+|++|+..++..+.+||+..+ +++|+|++++|...+.++
T Consensus 180 ~e~~~~~~Ls~e~ai~lv~d~F~SAaERdI~tGD~l~i~I~tk~gV~~e~~~ 231 (235)
T KOG0179|consen 180 LENAERTPLSLERAIRLVKDAFTSAAERDIYTGDKLEICIITKDGVEVETLP 231 (235)
T ss_pred cccCcccccCHHHHHHHHHHHhhhhhhcccccCCcEEEEEEecCCEEEEeee
Confidence 14558999999999999999999999998 799999999997555543
No 39
>KOG0175 consensus 20S proteasome, regulatory subunit beta type PSMB5/PSMB8/PRE2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-35 Score=241.25 Aligned_cols=199 Identities=18% Similarity=0.209 Sum_probs=185.8
Q ss_pred cCceEEEEEcCCeEEEEEeccCC-cCccccCCceeeEEecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Q 025897 35 AGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDV 113 (246)
Q Consensus 35 ~G~t~vgi~~~dgvvla~d~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 113 (246)
+|+|++|++++.|||+|+|+|++ +.++.....+||.+|+++++-+++|-++|++.+.+.+.++|.+|++++++.|++..
T Consensus 70 hGTTTLAF~f~~GvivAvDSRAs~G~YIasqtv~KVIeIn~ylLGTmAGgAADCqfWer~L~kecRL~eLRnkeriSVsa 149 (285)
T KOG0175|consen 70 HGTTTLAFKFKGGVIVAVDSRASAGSYIASQTVKKVIEINPYLLGTMAGGAADCQFWERVLAKECRLHELRNKERISVSA 149 (285)
T ss_pred CCceEEEEEecCcEEEEEeccccccceeechhhceeeeechhhhhcccCcchhhHHHHHHHHHHHHHHHHhcCcceehHH
Confidence 59999999999999999999999 89999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCcceeeceEEeecCChHHHHHHHHhhccCCCCCCHHH
Q 025897 114 LAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQE 193 (246)
Q Consensus 114 la~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~a~~~Le~~~~~~~~~s~~e 193 (246)
.++.|++++.+| .|+ .+.+..+|||||+ .||.||.+|..|+-..-+-+++|+|+.+|++.|++.| +++|+.+|
T Consensus 150 ASKllsN~~y~Y---kGm-GLsmGtMi~G~Dk-~GP~lyYVDseG~Rl~G~~FSVGSGs~yAYGVLDsgY--r~dls~eE 222 (285)
T KOG0175|consen 150 ASKLLSNMVYQY---KGM-GLSMGTMIAGWDK-KGPGLYYVDSEGTRLSGDLFSVGSGSTYAYGVLDSGY--RYDLSDEE 222 (285)
T ss_pred HHHHHHHHHhhc---cCc-chhheeeEeeccC-CCCceEEEcCCCCEecCceEeecCCCceeEEeeccCC--CCCCCHHH
Confidence 999999999665 344 5789999999998 8999999999999999999999999999999999986 78999999
Q ss_pred HHHHHHHHHHHhhhccCCCCc-EEEEEEEcCCCcEEEcCHHHHHHHHHHh
Q 025897 194 TVQTAISTLQSVLQEDFKASE-IEVGVVSKENPEFRVLSIEEIDEHLTAI 242 (246)
Q Consensus 194 a~~l~~~~l~~~~~~d~~~~~-iei~ii~~~~~~~~~l~~~eI~~~l~~i 242 (246)
|.+|+++|+..+..||..+++ +.++.|+++| +.+++..++.++..++
T Consensus 223 A~~L~rrAI~hAThRDaySGG~vnlyHv~edG--W~~v~~~Dv~~L~~~~ 270 (285)
T KOG0175|consen 223 AYDLARRAIYHATHRDAYSGGVVNLYHVKEDG--WVKVSNTDVSELHYHY 270 (285)
T ss_pred HHHHHHHHHHHHHhcccccCceEEEEEECCcc--ceecCCccHHHHHHHH
Confidence 999999999999999999985 9999999998 6778888888885443
No 40
>KOG0174 consensus 20S proteasome, regulatory subunit beta type PSMB6/PSMB9/PRE3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-35 Score=232.65 Aligned_cols=201 Identities=17% Similarity=0.239 Sum_probs=186.1
Q ss_pred HHhccCceEEEEEcCCeEEEEEeccCC-cCccccCCceeeEEecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCC
Q 025897 31 AVKAAGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEM 109 (246)
Q Consensus 31 av~~~G~t~vgi~~~dgvvla~d~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~ 109 (246)
.+. +|+|++|+++++||||++|+|++ +.++.++..+|+.+|.|+|+||-||..+|.|.+.+.++..+..|..+++.++
T Consensus 15 evs-tGTTImAv~y~gGVvlGaDSRTs~GayvanRvtDKlT~itD~i~cCRSGSAADtQaiaD~~~Y~L~~~~~q~~~~p 93 (224)
T KOG0174|consen 15 EVS-TGTTIMAVEYDGGVVLGADSRTSTGAYVANRVTDKLTPITDNIYCCRSGSAADTQAIADIVRYHLELYTIQENKPP 93 (224)
T ss_pred ccc-cCceEEEEEEcCcEEEeccCCccchHHHHhhhcccceeccccEEEecCCchhhHHHHHHHHHHHHHHhhhhcCCCc
Confidence 455 69999999999999999999999 8889999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCcceeeceEEeecCChHHHHHHHHhhccCCCCC
Q 025897 110 PVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAF 189 (246)
Q Consensus 110 ~~~~la~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~a~~~Le~~~~~~~~~ 189 (246)
++...|+.++++..+|. .-+.+.+||+|||+..|.++|.+.-.|...+.+++.-|+|+.+++++++..| +|+|
T Consensus 94 ~v~~aA~l~r~~~Y~~r-----e~L~AgliVAGwD~~~gGqVY~iplGG~l~rq~~aIgGSGStfIYGf~D~~~--r~nM 166 (224)
T KOG0174|consen 94 LVHTAASLFREICYNYR-----EMLSAGLIVAGWDEKEGGQVYSIPLGGSLTRQPFAIGGSGSTFIYGFCDANW--RPNM 166 (224)
T ss_pred hHHHHHHHHHHHHHhCH-----HhhhcceEEeecccccCceEEEeecCceEeecceeeccCCceeeeeeehhhc--CCCC
Confidence 99999999999985442 1378999999999988999999988888888888888999999999999999 7999
Q ss_pred CHHHHHHHHHHHHHHhhhccCCCCc-EEEEEEEcCCCcEEEcCHHHHHHHH
Q 025897 190 TFQETVQTAISTLQSVLQEDFKASE-IEVGVVSKENPEFRVLSIEEIDEHL 239 (246)
Q Consensus 190 s~~ea~~l~~~~l~~~~~~d~~~~~-iei~ii~~~~~~~~~l~~~eI~~~l 239 (246)
|+||++++..+|+..++.||-++++ |.+.+|+++|.+++++.++++.++-
T Consensus 167 t~EE~~~fvk~Av~lAi~rDGsSGGviR~~~I~~~Gver~~~~~d~~~~~~ 217 (224)
T KOG0174|consen 167 TLEECVRFVKNAVSLAIERDGSSGGVIRLVIINKAGVERRFFPGDKLGQFA 217 (224)
T ss_pred CHHHHHHHHHHHHHHHHhccCCCCCEEEEEEEccCCceEEEecCCcccccc
Confidence 9999999999999999999998885 9999999999999999999887653
No 41
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.2e-34 Score=232.66 Aligned_cols=189 Identities=20% Similarity=0.301 Sum_probs=175.9
Q ss_pred HHHhccCceEEEEEcCCeEEEEEeccCC-cCccccCCceeeEEecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCC
Q 025897 30 KAVKAAGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYE 108 (246)
Q Consensus 30 ~av~~~G~t~vgi~~~dgvvla~d~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 108 (246)
++.+ +|+|++|+.++||||+++|+|++ ++.+..++..||+.|.++|+||.+|-.+|...+.+.+..+...|+++.+++
T Consensus 32 ~~tk-TGTtIvgv~~k~gvIlgADtRaT~G~IvaDKnC~KIH~ia~~IyccGAGtAADte~vt~m~ss~l~Lh~l~t~R~ 110 (271)
T KOG0173|consen 32 KATK-TGTTIVGVIFKDGVILGADTRATEGPIVADKNCEKIHFIAPNIYCCGAGTAADTEMVTRMISSNLELHRLNTGRK 110 (271)
T ss_pred cccc-cCcEEEEEEeCCeEEEeecccccCCCeeecchhHHHhhcccceEEccCCchhhHHHHHHHHHHHHHHHHhccCCC
Confidence 3455 79999999999999999999999 788888899999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCcceeeceEEeecCChHHHHHHHHhhccCCCC
Q 025897 109 MPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPA 188 (246)
Q Consensus 109 ~~~~~la~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~a~~~Le~~~~~~~~ 188 (246)
+++-..-+.+.+.+..| .| ..++.+||+|+|+ .|||||.+.|.|+....+|.+.|+|+..|...||.+| +|+
T Consensus 111 ~rVv~A~~mlkQ~LFrY---qG--~IgA~LiiGGvD~-TGpHLy~i~phGStd~~Pf~alGSGslaAmsvlEsr~--k~d 182 (271)
T KOG0173|consen 111 PRVVTALRMLKQHLFRY---QG--HIGAALILGGVDP-TGPHLYSIHPHGSTDKLPFTALGSGSLAAMSVLESRW--KPD 182 (271)
T ss_pred CceeeHHHHHHHHHHHh---cC--cccceeEEccccC-CCCceEEEcCCCCcCccceeeeccchHHHHHHHHHhc--Ccc
Confidence 99999999999999766 23 4899999999998 8999999999999999999999999999999999999 799
Q ss_pred CCHHHHHHHHHHHHHHhhhccCCCC-cEEEEEEEcCCCcE
Q 025897 189 FTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEF 227 (246)
Q Consensus 189 ~s~~ea~~l~~~~l~~~~~~d~~~~-~iei~ii~~~~~~~ 227 (246)
|+.|||.+|+.+|+...+..|+.++ ++++|+|++.+.+|
T Consensus 183 lt~eea~~Lv~eAi~AGi~nDLgSGsnvdlcVI~~~~~~~ 222 (271)
T KOG0173|consen 183 LTKEEAIKLVCEAIAAGIFNDLGSGSNVDLCVITKKGVEY 222 (271)
T ss_pred cCHHHHHHHHHHHHHhhhccccCCCCceeEEEEeCCCccc
Confidence 9999999999999999999999888 89999999776544
No 42
>KOG0185 consensus 20S proteasome, regulatory subunit beta type PSMB4/PRE4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-32 Score=220.35 Aligned_cols=219 Identities=17% Similarity=0.252 Sum_probs=189.6
Q ss_pred cceeCCCCccch------hccHHHHHhccCceEEEEEcCCeEEEEEeccCC-cCccccCCceeeEEecCeEEEEEecchH
Q 025897 13 ITIFSPEGRLFQ------VEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTA 85 (246)
Q Consensus 13 ~t~f~p~Gr~~Q------~eya~~av~~~G~t~vgi~~~dgvvla~d~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~ 85 (246)
.++|.|.|...- +.-.+.+.- +|+++||+|++||||+|+|+..+ +++..-++.+|++++++|+++++||..+
T Consensus 13 ~~~f~~~~~~m~~a~~~~~qrt~~p~v-TGTSVla~ky~~GVviaaD~lgSYGslaR~~nVeRi~kVgdntllG~sGdis 91 (256)
T KOG0185|consen 13 PGTFYPSGSLMENAGDYPIQRTLNPIV-TGTSVLALKYKDGVVIAADTLGSYGSLARYKNVERIFKVGDNTLLGASGDIS 91 (256)
T ss_pred CCcCcCccchhhhccCCCcccccCcee-ccceEEEEEecCceEEEecccccchhhhhhcCceeeEEecCceEEecCccHH
Confidence 467777755321 112334555 69999999999999999999999 8988889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHhCCCCCHHHHHHHHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCcceeece
Q 025897 86 DARTLVQQARYEAAEFR-FKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHK 164 (246)
Q Consensus 86 D~~~l~~~~~~~~~~~~-~~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~ 164 (246)
|+|.+.+.+.+...... +..+..+.|+.++++|+..+ |..++.+.|+...++|+|+|+++.|.|-.+|-.|...+.+
T Consensus 92 D~Q~i~r~L~~l~iedn~~~Dg~~l~Pk~ih~yltrvl--Y~rRsKmnPlwntlvVgGv~~~g~~~lg~V~~~G~~Y~~~ 169 (256)
T KOG0185|consen 92 DFQYIQRVLEQLVIEDNRLDDGQSLGPKAIHSYLTRVL--YARRSKMNPLWNTLVVGGVDNTGEPFLGYVDLLGVAYESP 169 (256)
T ss_pred HHHHHHHHHHHHHhcccccccccccChHHHHHHHHHHH--HHhhhccCchhhheeEeeecCCCCeeEEEEeeccccccCc
Confidence 99999999988877643 55568999999999999999 6678889999999999999987789999999999999999
Q ss_pred EEeecCChHHHHHHHHhhcc-CCCCCCHHHHHHHHHHHHHHhhhccCCCC-cEEEEEEEcCCCcEEEcCHHHHH
Q 025897 165 ATSAGLKEQEAINFLEKKMK-NDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLSIEEID 236 (246)
Q Consensus 165 ~~a~G~g~~~a~~~Le~~~~-~~~~~s~~ea~~l~~~~l~~~~~~d~~~~-~iei~ii~~~~~~~~~l~~~eI~ 236 (246)
..|+|.|...|.++|++.|. +.++++.+||.+++.+||+....||+.+. +|+|++|+++| +.+-.+.+|+
T Consensus 170 ~vATGfg~hLa~P~lR~~~~~k~~~~s~eeA~~li~~cMrVL~YRD~ra~n~fqva~v~~eG--v~i~~p~qv~ 241 (256)
T KOG0185|consen 170 VVATGFGAHLALPLLRDEWEKKGEDLSREEAEALIEKCMRVLYYRDARASNEFQVATVDEEG--VTISKPYQVK 241 (256)
T ss_pred hhhhhhHHHhhhHHHHHhhhccchhhHHHHHHHHHHHHHHHHhccccccccceEEEEEcccc--eEecCceeee
Confidence 99999999999999999996 45789999999999999999999998776 69999999987 4444444443
No 43
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=99.97 E-value=8.9e-31 Score=210.59 Aligned_cols=166 Identities=16% Similarity=0.156 Sum_probs=141.0
Q ss_pred CceEEEEEcCCeEEEEEeccCC-cCccccCCceeeEEe-cCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Q 025897 36 GVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPI-TKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDV 113 (246)
Q Consensus 36 G~t~vgi~~~dgvvla~d~~~~-~~l~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 113 (246)
|+|+|||+++||||||+|+|.+ +.++.+++.+||++| +++++|+++|..+|++.|.+.++.+++.|+. +. ++.
T Consensus 1 gtTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~KI~~i~~d~i~~~~aG~~aD~q~l~~~l~~~~~~y~~--~~---~~~ 75 (172)
T PRK05456 1 GTTILAVRRNGKVAIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEHQG--NL---LRA 75 (172)
T ss_pred CcEEEEEEECCEEEEEECCceEeCcEEEcCCCceEEEeCCCCEEEEEeccHHHHHHHHHHHHHHHHHccC--cc---HHH
Confidence 6899999999999999999998 888889999999999 9999999999999999999999999999882 22 455
Q ss_pred HHHHHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCcceeec--eEEeecCChHHHHHHHHhhccCCCCCCH
Q 025897 114 LAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGH--KATSAGLKEQEAINFLEKKMKNDPAFTF 191 (246)
Q Consensus 114 la~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~--~~~a~G~g~~~a~~~Le~~~~~~~~~s~ 191 (246)
+++.+..+. .....+|+.+++|++ |. |+||.+||.|++.+. +++|+|+|+.+++++||+.|+ .|+|
T Consensus 76 ~a~l~~~l~----~~~~~~~l~~~~lv~--d~---~~ly~id~~G~~~~~~~~~~a~GSGs~~a~g~ld~~y~-~~~m-- 143 (172)
T PRK05456 76 AVELAKDWR----TDRYLRRLEAMLIVA--DK---EHSLIISGNGDVIEPEDGIIAIGSGGNYALAAARALLE-NTDL-- 143 (172)
T ss_pred HHHHHHHHH----hccCCCccEEEEEEE--cC---CcEEEECCCCcEeccCCCeEEEecCHHHHHHHHHHhhh-cCCC--
Confidence 554443321 112236888999984 43 699999999999766 799999999999999999982 2899
Q ss_pred HHHHHHHHHHHHHhhhccCCCC-cEEEEE
Q 025897 192 QETVQTAISTLQSVLQEDFKAS-EIEVGV 219 (246)
Q Consensus 192 ~ea~~l~~~~l~~~~~~d~~~~-~iei~i 219 (246)
||++++++|++.+.+||..++ +|++-.
T Consensus 144 -eA~~la~kai~~A~~Rd~~sg~~i~v~~ 171 (172)
T PRK05456 144 -SAEEIAEKALKIAADICIYTNHNITIEE 171 (172)
T ss_pred -CHHHHHHHHHHHHHHhCeeCCCcEEEEE
Confidence 999999999999999998877 687753
No 44
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=99.97 E-value=4.2e-30 Score=205.35 Aligned_cols=163 Identities=13% Similarity=0.066 Sum_probs=137.4
Q ss_pred ceEEEEEcCCeEEEEEeccCC-cCccccCCceeeEEecC-eEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q 025897 37 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITK-YLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVL 114 (246)
Q Consensus 37 ~t~vgi~~~dgvvla~d~~~~-~~l~~~~~~~Ki~~i~~-~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 114 (246)
+|+|||+++||||||+|+|.+ +.++.+++.+||++|++ |++|+++|..+|++.|.++++.+++.|+.+.++ .+
T Consensus 1 tTivgi~~~dgVvlaaD~r~t~G~~v~~~~~~Ki~~i~d~~i~~~~aG~~aD~~~l~~~~~~~~~~y~~~~~~-----~a 75 (171)
T cd01913 1 TTILAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVIAGFAGSTADAFTLFERFEAKLEQYPGNLLR-----AA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeccEEEcCCcceEEEeCCCCEEEEecccHHHHHHHHHHHHHHHHHhhchHHH-----HH
Confidence 589999999999999999988 88888999999999999 999999999999999999999999999988774 33
Q ss_pred HHHHHHHHHHHhhccCCCCcc-ceeEEEEEcCCCCcEEEEECCCcceeece--EEeecCChHHHHHHHHhhccCCC-CCC
Q 025897 115 AKWIADKSQVYTQHAYMRPLG-VVAMVLSIDEECGPRLFKCDPAGHFFGHK--ATSAGLKEQEAINFLEKKMKNDP-AFT 190 (246)
Q Consensus 115 a~~l~~~~~~~~~~~~~rP~~-v~~ll~G~d~~~gp~Ly~id~~G~~~~~~--~~a~G~g~~~a~~~Le~~~~~~~-~~s 190 (246)
++.+...+ . .+.+|+. +.++++++ ++||.+||.|.+.+.+ +.++|+|+.+|+++||.+| ++ +||
T Consensus 76 a~l~~~l~-~----~~~~~~l~a~~iv~~~-----~~ly~id~~G~~ie~~~~~~a~GSGS~ya~g~ld~~y--k~~~ms 143 (171)
T cd01913 76 VELAKDWR-T----DRYLRRLEAMLIVADK-----EHTLLISGNGDVIEPDDGIAAIGSGGNYALAAARALL--DHTDLS 143 (171)
T ss_pred HHHHHHHH-h----ccCcCceEEEEEEeCC-----CcEEEECCCCCEeccCCCeEEEeCCHHHHHHHHHHhh--ccCCCC
Confidence 44433332 1 1345655 55555433 3899999999999884 9999999999999999998 56 498
Q ss_pred HHHHHHHHHHHHHHhhhccCCCC-cEEEEE
Q 025897 191 FQETVQTAISTLQSVLQEDFKAS-EIEVGV 219 (246)
Q Consensus 191 ~~ea~~l~~~~l~~~~~~d~~~~-~iei~i 219 (246)
+.+++.+|++.+++||..++ +|++-.
T Consensus 144 ---~~~la~~Av~~A~~rd~~tg~~i~~~~ 170 (171)
T cd01913 144 ---AEEIARKALKIAADICIYTNHNITVEE 170 (171)
T ss_pred ---HHHHHHHHHHHHHhhCcccCCCEEEEe
Confidence 66999999999999999887 687653
No 45
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=99.97 E-value=1.9e-29 Score=201.58 Aligned_cols=164 Identities=13% Similarity=0.106 Sum_probs=136.5
Q ss_pred ceEEEEEcCCeEEEEEeccCC-cCccccCCceeeEEe-cCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q 025897 37 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPI-TKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVL 114 (246)
Q Consensus 37 ~t~vgi~~~dgvvla~d~~~~-~~l~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 114 (246)
+|+|||+++||||||+|+|.+ +.++.+++.+||++| +++++|+++|..+|++.|.++++.+++.|+.+. .+.+
T Consensus 1 tTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~Ki~~i~~d~i~~~~aG~~aD~q~l~~~~~~~~~~y~~~~-----~~~~ 75 (171)
T TIGR03692 1 TTILAVRRNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEYQGNL-----TRAA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeceEEEcCCCCeEEEeCCCCEEEEecchHHHHHHHHHHHHHHHHHccCch-----HHHH
Confidence 589999999999999999988 888889999999999 599999999999999999999999999988743 2555
Q ss_pred HHHHHHHHHHHhhccCCCC-ccceeEEEEEcCCCCcEEEEECCCcceeec--eEEeecCChHHHHHHHHhhccCCCCCCH
Q 025897 115 AKWIADKSQVYTQHAYMRP-LGVVAMVLSIDEECGPRLFKCDPAGHFFGH--KATSAGLKEQEAINFLEKKMKNDPAFTF 191 (246)
Q Consensus 115 a~~l~~~~~~~~~~~~~rP-~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~--~~~a~G~g~~~a~~~Le~~~~~~~~~s~ 191 (246)
++.+++.. . ...+| +.+.++++|+ ++||.+||.|.+.+. +++++|+|+.+|+++||..|+ +++|+
T Consensus 76 a~l~~~~~----~-~~~~~~l~a~~iv~~~-----~~ly~i~~~G~~ie~~~~~~a~GSGS~~a~g~ld~~y~-~~~~s- 143 (171)
T TIGR03692 76 VELAKDWR----T-DRYLRRLEAMLIVADK-----ETSLLISGTGDVIEPEDGIAAIGSGGNYALAAARALLR-NTDLS- 143 (171)
T ss_pred HHHHHHHh----h-cccccccEEEEEEEcC-----CCEEEEcCCCcEeccCCCeEEEeCCHHHHHHHHHHhhh-cCCCC-
Confidence 55544421 1 12233 3366665533 389999999999986 599999999999999999984 36777
Q ss_pred HHHHHHHHHHHHHhhhccCCCC-cEEEEE
Q 025897 192 QETVQTAISTLQSVLQEDFKAS-EIEVGV 219 (246)
Q Consensus 192 ~ea~~l~~~~l~~~~~~d~~~~-~iei~i 219 (246)
|++++.++++.+++||..++ +|+|-.
T Consensus 144 --a~~la~~Av~~A~~rd~~sg~~i~v~~ 170 (171)
T TIGR03692 144 --AEEIAREALKIAADICIYTNHNITIEE 170 (171)
T ss_pred --HHHHHHHHHHHHHhhCccCCCCEEEEe
Confidence 99999999999999999887 687753
No 46
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=99.97 E-value=1.1e-28 Score=195.63 Aligned_cols=161 Identities=34% Similarity=0.493 Sum_probs=151.5
Q ss_pred ceEEEEEcCCeEEEEEeccCCcCccc-cCCceeeEEecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 025897 37 VTSIGVRGKDSVCVVTQKKVPDKLLD-HTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 115 (246)
Q Consensus 37 ~t~vgi~~~dgvvla~d~~~~~~l~~-~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 115 (246)
+|+||++++||||+|+|++.+..+.. ....+|++.++++++++++|..+|++.+.++++.+++.|++.++.++++..++
T Consensus 1 ~t~i~i~~~~gvila~d~~~~~~~~~~~~~~~ki~~~~~~~~~~~sG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
T cd01901 1 STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLREALQLYRLRYGEPISVVALA 80 (164)
T ss_pred CcEEEEEeCCEEEEEEecccCccCeecCCCcceEEEecCCeEEEEecChHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 48999999999999999999855544 67889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCcceeec-eEEeecCChHHHHHHHHhhccCCCCCCHHHH
Q 025897 116 KWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGH-KATSAGLKEQEAINFLEKKMKNDPAFTFQET 194 (246)
Q Consensus 116 ~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~-~~~a~G~g~~~a~~~Le~~~~~~~~~s~~ea 194 (246)
+.+++.++.+++ .||+++++||+|+|+ ++|+||.+||.|++.++ .++++|+++..+.++|++.| +++|+.+|+
T Consensus 81 ~~~~~~~~~~~~---~~p~~~~~iiag~~~-~~~~l~~id~~g~~~~~~~~~~~G~~~~~~~~~l~~~~--~~~~~~~~~ 154 (164)
T cd01901 81 KELAKLLQVYTQ---GRPFGVNLIVAGVDE-GGGNLYYIDPSGPVIENPGAVATGSRSQRAKSLLEKLY--KPDMTLEEA 154 (164)
T ss_pred HHHHHHHHHhcC---CCCcceEEEEEEEcC-CCCEEEEECCCcCEeecCcEEEECCCCHHHHHHHHHHh--cCCCCHHHH
Confidence 999999988876 789999999999997 79999999999999999 99999999999999999998 578999999
Q ss_pred HHHHHHHHH
Q 025897 195 VQTAISTLQ 203 (246)
Q Consensus 195 ~~l~~~~l~ 203 (246)
++++.+||+
T Consensus 155 ~~~~~~~l~ 163 (164)
T cd01901 155 VELALKALK 163 (164)
T ss_pred HHHHHHHHh
Confidence 999999985
No 47
>KOG0180 consensus 20S proteasome, regulatory subunit beta type PSMB3/PUP3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.7e-29 Score=193.42 Aligned_cols=185 Identities=17% Similarity=0.279 Sum_probs=171.8
Q ss_pred cCceEEEEEcCCeEEEEEeccCC-cCccccCCceeeEEecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Q 025897 35 AGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDV 113 (246)
Q Consensus 35 ~G~t~vgi~~~dgvvla~d~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 113 (246)
+|+++||++++++|.+|+|.|.. ......++.+|||+++++++++.+|+..|++.|.+.++...++|+++.++++.|+.
T Consensus 7 nGg~vvAM~gk~cvaIa~D~RlG~q~~tistdf~ki~~igdr~y~GL~glatDvqtl~~~~~fr~nLy~lre~R~i~P~~ 86 (204)
T KOG0180|consen 7 NGGSVVAMAGKNCVAIASDLRLGVQSQTISTDFQKIFKIGDRLYLGLTGLATDVQTLLERLRFRKNLYELREEREIKPET 86 (204)
T ss_pred cCceEEEEeCCceEEEEeccccceeeeeeeccchhheecCCeeEEeccccchhHHHHHHHHHHHHhHHHhhhhcccCcHH
Confidence 38899999999999999999998 44555678999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCccee-eceEEeecCChHHHHHHHHhhccCCCCCCHH
Q 025897 114 LAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFF-GHKATSAGLKEQEAINFLEKKMKNDPAFTFQ 192 (246)
Q Consensus 114 la~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~-~~~~~a~G~g~~~a~~~Le~~~~~~~~~s~~ 192 (246)
+++.++..+ |.. ++-||-+..+|||+|+++.|.|+.+|..|... +.++.+.|.+++...+..|..| +|+|..|
T Consensus 87 ~s~mvS~~l--Yek--RfgpYf~~PvVAGl~~~~kPfIc~mD~IGc~~~~~DFVvsGTa~e~L~GmCE~ly--~pnmepd 160 (204)
T KOG0180|consen 87 FSSMVSSLL--YEK--RFGPYFTEPVVAGLDDDNKPFICGMDLIGCIDAPKDFVVSGTASEQLYGMCEALY--EPNMEPD 160 (204)
T ss_pred HHHHHHHHH--HHh--hcCCcccceeEeccCCCCCeeEeecccccCcCccCCeEEecchHHHHHHHHHHhc--CCCCCHH
Confidence 999999999 433 45699999999999998899999999999997 4489999999999999999998 7999999
Q ss_pred HHHHHHHHHHHHhhhccCCCC-cEEEEEEEcCCC
Q 025897 193 ETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENP 225 (246)
Q Consensus 193 ea~~l~~~~l~~~~~~d~~~~-~iei~ii~~~~~ 225 (246)
++.+.+.++|..+.+||.-+| +..+++|+++..
T Consensus 161 ~LFetisQa~Lna~DRDalSGwGa~vyiI~kdkv 194 (204)
T KOG0180|consen 161 ELFETISQALLNAVDRDALSGWGAVVYIITKDKV 194 (204)
T ss_pred HHHHHHHHHHHhHhhhhhhccCCeEEEEEccchh
Confidence 999999999999999999888 899999999864
No 48
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=99.48 E-value=1.3e-14 Score=76.12 Aligned_cols=23 Identities=83% Similarity=1.328 Sum_probs=22.2
Q ss_pred CCcccceeCCCCccchhccHHHH
Q 025897 9 YDRHITIFSPEGRLFQVEYAFKA 31 (246)
Q Consensus 9 yd~~~t~f~p~Gr~~Q~eya~~a 31 (246)
||+++|+|||+|||+|||||.||
T Consensus 1 YD~~~t~FSp~Grl~QVEYA~~A 23 (23)
T PF10584_consen 1 YDRSITTFSPDGRLFQVEYAMKA 23 (23)
T ss_dssp TSSSTTSBBTTSSBHHHHHHHHH
T ss_pred CCCCceeECCCCeEEeeEeeecC
Confidence 89999999999999999999986
No 49
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=4e-12 Score=101.91 Aligned_cols=184 Identities=11% Similarity=0.104 Sum_probs=144.1
Q ss_pred ceEEEEEcCCeEEEEEeccCCcCccccCCceeeEEec---Ce-EEEEEecchHHHHHHHHHHHHHHHH--HHHHhCCCCC
Q 025897 37 VTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPIT---KY-LGLLATGMTADARTLVQQARYEAAE--FRFKYGYEMP 110 (246)
Q Consensus 37 ~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~Ki~~i~---~~-i~~~~sG~~~D~~~l~~~~~~~~~~--~~~~~~~~~~ 110 (246)
+-|||++...|.|+++|+|++...-.....+|+|... ++ ++++.+|..+-.|.+.+.+.+..+. +..-. .-++
T Consensus 2 TYCv~l~l~~GlVf~sDsRTNAGvD~istfkKl~~~~~pGdRvlvl~taGNLA~tQaV~~ll~e~~~~d~~~~L~-n~~s 80 (255)
T COG3484 2 TYCVGLILDFGLVFGSDSRTNAGVDYISTFKKLFVFELPGDRVLVLCTAGNLAITQAVLHLLDERIQRDDGDSLL-NIPS 80 (255)
T ss_pred ceEEEEEeccceEEecccccccCchHHHHHHHHhhccCCCceEEEEEecCccHHHHHHHHHHHHHhhccchhhhh-cchh
Confidence 4699999999999999999984443334567777663 33 5677899999999999999877752 22222 3456
Q ss_pred HHHHHHHHHHHHHHHhhccC------CCCccceeEEEEEcCCCCcEEEEECCCccee----eceEEeecCChHHHHHHHH
Q 025897 111 VDVLAKWIADKSQVYTQHAY------MRPLGVVAMVLSIDEECGPRLFKCDPAGHFF----GHKATSAGLKEQEAINFLE 180 (246)
Q Consensus 111 ~~~la~~l~~~~~~~~~~~~------~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~----~~~~~a~G~g~~~a~~~Le 180 (246)
+-..+..++....+-..+.. .--|.|++|++|.-..+-|.||.|-|.|++. +..+..+|.. .+.+++|+
T Consensus 81 m~eattlvgetvrEv~~rds~~leka~~dfn~sfllGGQI~G~pp~Ly~IYpqGNFIqaT~etpf~QiGEt-KYGKPild 159 (255)
T COG3484 81 MYEATTLVGETVREVQARDSPALEKAGIDFNCSFLLGGQIKGEPPRLYLIYPQGNFIQATPETPFLQIGET-KYGKPILD 159 (255)
T ss_pred HHHHHHHHHHHHHHHHhccCchhhccCcceeEEEEEcceecCCCceeEEEccCCCeeecCCCCceeEcccc-ccCchhhh
Confidence 66777788877766543321 1248899999999875558999999999998 3468899987 46899999
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHHhhhccCCCC-cEEEEEEEcCC
Q 025897 181 KKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKEN 224 (246)
Q Consensus 181 ~~~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~~-~iei~ii~~~~ 224 (246)
+.+ .-+++++|+.+.++-++...++.+++.| .+++.++.++-
T Consensus 160 R~i--~~~~pLeea~kcaLvS~DSTlkSNiSVGlPldLl~~e~ds 202 (255)
T COG3484 160 RTI--TYDTPLEEAAKCALVSFDSTLKSNISVGLPLDLLVYEADS 202 (255)
T ss_pred hhh--hccCCHHHHhhheEEecchhhhccccccCCceeEEEeccc
Confidence 998 4579999999999999999999999988 79999999985
No 50
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=3e-11 Score=93.67 Aligned_cols=168 Identities=17% Similarity=0.141 Sum_probs=119.1
Q ss_pred cCceEEEEEcCCeEEEEEeccCC-cCccccCCceeeEEecC-eEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Q 025897 35 AGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITK-YLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVD 112 (246)
Q Consensus 35 ~G~t~vgi~~~dgvvla~d~~~~-~~l~~~~~~~Ki~~i~~-~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~ 112 (246)
+++|+|+++-++-|++|.|.+.+ +..+.+.+..|+.+|.. +++.+++|..+|+..|.+.+..+++.|+-+. .
T Consensus 3 h~TTiv~vr~~gkv~iagDGQVtlG~tvmK~narKvRkl~~gkvlaGFAGstADaftLfe~fe~kle~~~g~L------~ 76 (178)
T COG5405 3 HMTTIVAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEQYQGDL------F 76 (178)
T ss_pred eeEEEEEEeeCCeEEEecCceEeecceeeeccHHHHHHHcCCcEEEEecccchhHHHHHHHHHHHHHHccCcH------H
Confidence 37999999999999999999998 88877777777777765 8999999999999999999999998875221 1
Q ss_pred HHHHHHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCcceeec--eEEeecCChHHHHHHHHhhccCCCCCC
Q 025897 113 VLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGH--KATSAGLKEQEAINFLEKKMKNDPAFT 190 (246)
Q Consensus 113 ~la~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~--~~~a~G~g~~~a~~~Le~~~~~~~~~s 190 (246)
..+..++.-. ++. ..+|.+.+-++++ |+ -.+|-+...|-+.+- ..+|||||..+|.......+. .+++|
T Consensus 77 raavelaKdw--r~D-k~lr~LEAmllVa--d~---~~il~isG~gdV~epe~~~~aIGSGgnyAl~AarAl~~-~~~ls 147 (178)
T COG5405 77 RAAVELAKDW--RTD-KYLRKLEAMLLVA--DK---THILIITGNGDVIEPEDDIIAIGSGGNYALSAARALME-NTELS 147 (178)
T ss_pred HHHHHHHHhh--hhh-hHHHHHhhheeEe--CC---CcEEEEecCcceecCCCCeEEEcCCchHHHHHHHHHHh-ccCCC
Confidence 1222222222 111 1245566777776 43 247888888888733 489999999999998888874 45665
Q ss_pred HHHHHHHHHHHHHHhhhccCCCC-cEEEEEE
Q 025897 191 FQETVQTAISTLQSVLQEDFKAS-EIEVGVV 220 (246)
Q Consensus 191 ~~ea~~l~~~~l~~~~~~d~~~~-~iei~ii 220 (246)
|-+++.++|..+.+-++++. +|.|..+
T Consensus 148 ---A~eIa~~sl~iA~eiciyTN~ni~ve~l 175 (178)
T COG5405 148 ---AREIAEKSLKIAGDICIYTNHNIVVEEL 175 (178)
T ss_pred ---HHHHHHHHHhhhheEEEecCCcEEEEEe
Confidence 55567777776653333333 4555444
No 51
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. They do show distant similarity to NTPases and to nucleic acid binding enzymes.
Probab=96.50 E-value=0.29 Score=39.81 Aligned_cols=151 Identities=16% Similarity=0.165 Sum_probs=90.6
Q ss_pred ceEEEEEcCCeEEEEEeccCCcCccccCCceeeEEecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Q 025897 37 VTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAK 116 (246)
Q Consensus 37 ~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~ 116 (246)
|.+||.-+++|.|+|.|+|. ++|-|.-.....|.+.| -.|+--+-+.|.+
T Consensus 2 SLII~y~GknGaViaGDkR~---------------------I~F~G~~~~re~LEeeL---------YsG~IktdeEL~k 51 (194)
T PF09894_consen 2 SLIIAYYGKNGAVIAGDKRN---------------------IAFRGDEEKREKLEEEL---------YSGKIKTDEELLK 51 (194)
T ss_pred eEEEEEecCCCcEEecccee---------------------eeecCCHHHHHHHHHHH---------hCCccCCHHHHHH
Confidence 57999999999999999983 46777777766666544 2244444444555
Q ss_pred HHHHHHHHHh--h-ccCCCCccceeEEE------EEcCCCCcEEEEE-------CCCcceeeceEEeecCCh--------
Q 025897 117 WIADKSQVYT--Q-HAYMRPLGVVAMVL------SIDEECGPRLFKC-------DPAGHFFGHKATSAGLKE-------- 172 (246)
Q Consensus 117 ~l~~~~~~~~--~-~~~~rP~~v~~ll~------G~d~~~gp~Ly~i-------d~~G~~~~~~~~a~G~g~-------- 172 (246)
....+--... . +...+-.+- ++++ |.+. ..-.+|.+ |-.|.-. .-...|.++
T Consensus 52 kA~Elgv~i~I~D~r~KV~~~~~-vlvGEV~s~~g~~s-kRRRiY~t~g~~~Ivei~~~~i--~~~~~g~~sgiIVfGNk 127 (194)
T PF09894_consen 52 KAEELGVKIKITDDREKVRKIGD-VLVGEVTSISGKDS-KRRRIYATKGKYAIVEIENDEI--TNKSRGEGSGIIVFGNK 127 (194)
T ss_pred HHHHcCCEEEEecCchheEEeCC-EEEEEEEEEcCccc-eeeEEEecCCCEEEEEecCCeE--EEEecCCceeEEEECCH
Confidence 4332210000 0 001112222 2222 2232 23456653 2222222 123344444
Q ss_pred ---HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCCC-cEEEEEEEcC
Q 025897 173 ---QEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKE 223 (246)
Q Consensus 173 ---~~a~~~Le~~~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~~-~iei~ii~~~ 223 (246)
+.|..+|.+.| .+.|+++++.++..++|..+.....+.. .+++...++.
T Consensus 128 ~~K~ia~~~lkk~~--~~k~~l~~i~~i~~~i~~~~a~~tpsvS~~~d~~~~~~~ 180 (194)
T PF09894_consen 128 FTKEIANKELKKYW--KPKMSLKDIENIFEKIMEEVASKTPSVSKEYDIYITTKK 180 (194)
T ss_pred HHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHHHhhcCCCccCcEEEEEeccc
Confidence 67888999999 4889999999999999999876666544 7999877765
No 52
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=95.01 E-value=1.1 Score=37.82 Aligned_cols=168 Identities=17% Similarity=0.185 Sum_probs=100.4
Q ss_pred ceEEEEEcCCeEEEEEeccCCcCccccCCceeeEEecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Q 025897 37 VTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAK 116 (246)
Q Consensus 37 ~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~ 116 (246)
+.+|+.-+++|.|+|.|+|. +.+-|.-.|...|.+.| -.|+-.+-+.|++
T Consensus 2 tLviay~gknGaviaGDrR~---------------------i~frgdee~re~lEekL---------YsGeIkteEEL~r 51 (293)
T COG4079 2 TLVIAYIGKNGAVIAGDRRE---------------------ITFRGDEEDREKLEEKL---------YSGEIKTEEELAR 51 (293)
T ss_pred eEEEEEecCCCcEEeccceE---------------------EEEecChhHHHHHHHHh---------hcCccccHHHHHH
Confidence 46899999999999999873 35667777777666544 2455556666777
Q ss_pred HHHHHHHHHhh---ccCCCCccceeEEEEEcCC-----CCcEEEEECCCccee-------eceEEeecCC----------
Q 025897 117 WIADKSQVYTQ---HAYMRPLGVVAMVLSIDEE-----CGPRLFKCDPAGHFF-------GHKATSAGLK---------- 171 (246)
Q Consensus 117 ~l~~~~~~~~~---~~~~rP~~v~~ll~G~d~~-----~gp~Ly~id~~G~~~-------~~~~~a~G~g---------- 171 (246)
....+--.++- +...|...-+++++-...- ..-.+|.+ .|.+. +.-....|.|
T Consensus 52 ~aeel~Vki~vtDdr~KVrk~~d~VvvGEV~s~~~~~vkRRRvYAT--~Ga~aIvel~gs~vts~~~g~g~aiIv~Gnk~ 129 (293)
T COG4079 52 KAEELGVKITVTDDRNKVRKRNDGVVVGEVSSVERGIVKRRRVYAT--AGAYAIVELRGSEVTSTSQGKGSAIIVFGNKF 129 (293)
T ss_pred HHHHcCCEEEEEcchHhhhcccCcEEEEEeecccccceeeeEEeec--CCceEEEEecCCeeEeeecCCCceEEEECcHH
Confidence 65543221110 0112233333444433321 11345542 23221 1112233432
Q ss_pred -hHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCC-CcEEEEEEEcCCCcEEEcCHHHHHHH
Q 025897 172 -EQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKA-SEIEVGVVSKENPEFRVLSIEEIDEH 238 (246)
Q Consensus 172 -~~~a~~~Le~~~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~-~~iei~ii~~~~~~~~~l~~~eI~~~ 238 (246)
-+.+..+|.++| .+.++++++.+....+|..+.....+. ..++++.+..+-..+.+|.+.+|+.+
T Consensus 130 ~Ke~aneflk~~l--~~k~~lqd~~dal~elfe~vss~tpsVskeydiy~vs~~~d~~~rl~kkDie~L 196 (293)
T COG4079 130 TKEVANEFLKDNL--TKKSKLQDAVDALMELFETVSSKTPSVSKEYDIYQVSSNVDPVLRLVKKDIETL 196 (293)
T ss_pred HHHHHHHHHHhhc--cCCCCHHHHHHHHHHHHHHhhcCCCcccceeEEEEecCCcCHHHHHHHHHHHHH
Confidence 345677899988 677999999999999998777555544 47999988876443666666666544
No 53
>KOG3361 consensus Iron binding protein involved in Fe-S cluster formation [Energy production and conversion]
Probab=79.07 E-value=3.8 Score=31.33 Aligned_cols=43 Identities=21% Similarity=0.156 Sum_probs=38.5
Q ss_pred EECCCcceeeceEEeecCChHHHHHHHHhhccCCCCCCHHHHHHH
Q 025897 153 KCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQT 197 (246)
Q Consensus 153 ~id~~G~~~~~~~~a~G~g~~~a~~~Le~~~~~~~~~s~~ea~~l 197 (246)
.+|-+|.+...++-..|.|+..|..-+-..| -.++|+||+.++
T Consensus 72 kvd~~g~I~dakFKTFGCGSAIASSS~aTew--vkgkt~dea~kI 114 (157)
T KOG3361|consen 72 KVDDSGVIEDAKFKTFGCGSAIASSSLATEW--VKGKTLDEALKI 114 (157)
T ss_pred EECCCCcEEEeeeeecccchHhhhhHHHHHH--HccccHHHHHhc
Confidence 6788999999999999999999999999999 457999998865
No 54
>PF00178 Ets: Ets-domain; InterPro: IPR000418 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription []. The ets oncogene is such a factor, possessing a region of 85-90 amino acids known as the ETS (erythroblast transformation specific) domain [, , ]. This domain is rich in positively-charged and aromatic residues, and binds to purine-rich segments of DNA. The ETS domain has been identified in other transcription factors such as PU.1, human erg, human elf-1, human elk-1, GA binding protein, and a number of others [, , ]. It is generally localized at the C terminus of the protein, with the exception of ELF-1, ELK-1, ELK-3, ELK-4 and ERF where it is found at the N terminus. NMR-analysis of the structure of the Ets domains revealed that it contains three alpha-helixes (1-3) and four-stranded beta-sheets (1-4) arranged in the order alpha1-beta1-beta2-alpha2-alpha3-beta3-beta4 forming a winged helix-turn-helix (wHTH) topology []. The third alpha-helix is responsive to contact to the major groove of the DNA. Different members of the Ets family proteins display distinct DNA binding specificities. The Ets domains and the flanking amino acid sequences of the proteins influence the binding affinity, and the alteration of a single amino acid in the Ets domain can change its DNA binding specificities. Avian leukemia virus E26 is a replication defective retrovirus that induces a mixed erythroid/myeloid leukemia in chickens.This virus carries two distinct oncogenes: v-myb and v-ets. The ets portion of this oncogene is required for the induction of erythroblastosis. V-ets and c-ets-1, its cellular progenitor, have been shown [] to be nuclear DNA-binding proteins. Ets-1 differs slightly from v-ets at its carboxy-terminal region. In most species where it has been sequenced, c-ets-1 exists in various isoforms generated by alternative splicing and differential phosphorylation.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1DUX_F 4AVP_B 1HBX_G 1BC7_C 1K6O_A 1BC8_C 1PUE_E 1FLI_A 2DAO_A 1WWX_A ....
Probab=64.38 E-value=17 Score=25.69 Aligned_cols=29 Identities=17% Similarity=0.302 Sum_probs=23.6
Q ss_pred EEEEEcCCCcEEEcCHHHHHHHHHHhhcc
Q 025897 217 VGVVSKENPEFRVLSIEEIDEHLTAISER 245 (246)
Q Consensus 217 i~ii~~~~~~~~~l~~~eI~~~l~~i~~~ 245 (246)
|.+.++++..|+.+++++|.+.+..-..+
T Consensus 21 I~Wt~~~~~eFki~d~~~vA~lWG~~k~~ 49 (85)
T PF00178_consen 21 IAWTGKRGGEFKIVDPEAVARLWGKHKNR 49 (85)
T ss_dssp EEEEETSTTEEEESSHHHHHHHHHHHTTS
T ss_pred eEeeccCCCeEEecCHHHHHHHHHHHcCC
Confidence 67888777789999999999998765443
No 55
>smart00413 ETS erythroblast transformation specific domain. variation of the helix-turn-helix motif
Probab=60.28 E-value=15 Score=26.04 Aligned_cols=27 Identities=15% Similarity=0.254 Sum_probs=22.4
Q ss_pred EEEEEEcCCCcEEEcCHHHHHHHHHHh
Q 025897 216 EVGVVSKENPEFRVLSIEEIDEHLTAI 242 (246)
Q Consensus 216 ei~ii~~~~~~~~~l~~~eI~~~l~~i 242 (246)
-|.+.+++++.|+.+++++|.+.+..-
T Consensus 20 ~I~W~~k~~g~Fkl~~~~~vA~lWG~~ 46 (87)
T smart00413 20 IIRWTDRDGGEFKLVDPEEVARLWGQR 46 (87)
T ss_pred eEEeeCCCCCEEEecCHHHHHHHHhhh
Confidence 467888777779999999999998754
No 56
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=47.51 E-value=20 Score=23.46 Aligned_cols=32 Identities=22% Similarity=0.336 Sum_probs=27.6
Q ss_pred ceeCC-CCccchhccHHHHHhccCceEEEEEcCC
Q 025897 14 TIFSP-EGRLFQVEYAFKAVKAAGVTSIGVRGKD 46 (246)
Q Consensus 14 t~f~p-~Gr~~Q~eya~~av~~~G~t~vgi~~~d 46 (246)
|.||+ +|.+.--+|...+..+ |-..+||.=.+
T Consensus 6 t~~S~~~~~~~~~~~~~~a~~~-g~~~v~iTDh~ 38 (67)
T smart00481 6 SDYSLLDGALSPEELVKRAKEL-GLKAIAITDHG 38 (67)
T ss_pred cCCccccccCCHHHHHHHHHHc-CCCEEEEeeCC
Confidence 67888 8999888999999985 99999998776
No 57
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=47.38 E-value=14 Score=22.80 Aligned_cols=34 Identities=24% Similarity=0.406 Sum_probs=25.1
Q ss_pred eecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHH
Q 025897 167 SAGLKEQEAINFLEKKMKNDPAFTFQETVQTAIST 201 (246)
Q Consensus 167 a~G~g~~~a~~~Le~~~~~~~~~s~~ea~~l~~~~ 201 (246)
+-|+....+...+.+... .++++.++.++.+++.
T Consensus 12 ~LGy~~~e~~~av~~~~~-~~~~~~e~~ik~aLk~ 45 (47)
T PF07499_consen 12 SLGYSKAEAQKAVSKLLE-KPGMDVEELIKQALKL 45 (47)
T ss_dssp HTTS-HHHHHHHHHHHHH-STTS-HHHHHHHHHCC
T ss_pred HcCCCHHHHHHHHHHhhc-CCCCCHHHHHHHHHhh
Confidence 458888889999888764 6889999988887653
No 58
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=46.28 E-value=1e+02 Score=21.67 Aligned_cols=50 Identities=14% Similarity=0.242 Sum_probs=37.3
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEcCCCcEEEcCHHHHHHHHH
Q 025897 186 DPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLT 240 (246)
Q Consensus 186 ~~~~s~~ea~~l~~~~l~~~~~~d~~~~~iei~ii~~~~~~~~~l~~~eI~~~l~ 240 (246)
.+.+|.++..+.++...+. .....|.+.|++.+|..+.+-+.+|+++-+.
T Consensus 17 d~~~s~e~L~~~v~~~c~~-----~~~q~ft~kw~DEEGDp~tiSS~~EL~EA~r 66 (83)
T cd06404 17 DPSISLEELCNEVRDMCRF-----HNDQPFTLKWIDEEGDPCTISSQMELEEAFR 66 (83)
T ss_pred CCCcCHHHHHHHHHHHhCC-----CCCCcEEEEEECCCCCceeecCHHHHHHHHH
Confidence 3567888888876665532 2234699999999988799999999887654
No 59
>PRK08868 flagellar protein FlaG; Provisional
Probab=46.12 E-value=1.2e+02 Score=23.67 Aligned_cols=33 Identities=21% Similarity=0.187 Sum_probs=26.9
Q ss_pred CCcEEEEEEEcCCC-cEEEcCHHHHHHHHHHhhc
Q 025897 212 ASEIEVGVVSKENP-EFRVLSIEEIDEHLTAISE 244 (246)
Q Consensus 212 ~~~iei~ii~~~~~-~~~~l~~~eI~~~l~~i~~ 244 (246)
.+.+-|.+|+++.+ -.|.+++|++=+++.+|.+
T Consensus 99 tgr~VVkViD~~T~EVIRQIP~Ee~L~la~~l~e 132 (144)
T PRK08868 99 SGRDVVTIYEASTGDIIRQIPDEEMLEVLRRLAE 132 (144)
T ss_pred CCCEEEEEEECCCCceeeeCCCHHHHHHHHHHHH
Confidence 34688999998754 4889999999999888875
No 60
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=41.97 E-value=52 Score=20.50 Aligned_cols=32 Identities=25% Similarity=0.226 Sum_probs=26.0
Q ss_pred EEECCCcceeeceEEeecCChHHHHHHHHhhc
Q 025897 152 FKCDPAGHFFGHKATSAGLKEQEAINFLEKKM 183 (246)
Q Consensus 152 y~id~~G~~~~~~~~a~G~g~~~a~~~Le~~~ 183 (246)
|.|+|+|.+...---..|++...+...||..+
T Consensus 3 ~~I~~dG~V~~~v~G~~G~~C~~~t~~lE~~L 34 (48)
T PF11211_consen 3 FTIYPDGRVEEEVEGFKGSSCLEATAALEEAL 34 (48)
T ss_pred EEECCCcEEEEEEEeccChhHHHHHHHHHHHh
Confidence 67899999987666677888888888888765
No 61
>KOG3806 consensus Predicted transcription factor [Transcription]
Probab=41.68 E-value=38 Score=27.33 Aligned_cols=26 Identities=19% Similarity=0.335 Sum_probs=21.3
Q ss_pred EEEEEcCCCcEEEcCHHHHHHHHHHh
Q 025897 217 VGVVSKENPEFRVLSIEEIDEHLTAI 242 (246)
Q Consensus 217 i~ii~~~~~~~~~l~~~eI~~~l~~i 242 (246)
|+|..++|.+|+.++++||...+..=
T Consensus 88 I~Wtg~~g~EFkl~dp~eVArlWG~r 113 (177)
T KOG3806|consen 88 IAWTGKDGLEFKLVDPDEVARLWGAR 113 (177)
T ss_pred eEEeCCCCceEEecCHHHHHHHHhhh
Confidence 55666677789999999999998753
No 62
>PRK07738 flagellar protein FlaG; Provisional
Probab=41.61 E-value=1.5e+02 Score=22.27 Aligned_cols=33 Identities=21% Similarity=0.240 Sum_probs=26.7
Q ss_pred CCcEEEEEEEcCCC-cEEEcCHHHHHHHHHHhhc
Q 025897 212 ASEIEVGVVSKENP-EFRVLSIEEIDEHLTAISE 244 (246)
Q Consensus 212 ~~~iei~ii~~~~~-~~~~l~~~eI~~~l~~i~~ 244 (246)
.+.+-|.+|+++.+ -.|.++++++=.++.++.+
T Consensus 74 t~~~vVkVvD~~T~EVIRQIPpEe~L~l~~~m~e 107 (117)
T PRK07738 74 LNEYYVQVVDERTNEVIREIPPKKLLDMYAAMME 107 (117)
T ss_pred CCcEEEEEEECCCCeeeeeCCCHHHHHHHHHHHH
Confidence 34689999998765 4888999999999888764
No 63
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=40.85 E-value=1.4e+02 Score=21.59 Aligned_cols=33 Identities=27% Similarity=0.383 Sum_probs=25.0
Q ss_pred CCcEEEEEEEcCCCc-EEEcCHHHHHHHHHHhhc
Q 025897 212 ASEIEVGVVSKENPE-FRVLSIEEIDEHLTAISE 244 (246)
Q Consensus 212 ~~~iei~ii~~~~~~-~~~l~~~eI~~~l~~i~~ 244 (246)
++.+-|.+++++.++ .|.++++++=.+..+|.+
T Consensus 65 ~~~~vVkViD~~T~eVIRqIP~Ee~l~l~~~l~e 98 (107)
T PF03646_consen 65 SGRVVVKVIDKETGEVIRQIPPEELLDLAKRLRE 98 (107)
T ss_dssp TTEEEEEEEETTT-SEEEEE-HHHHHHHHHHHHH
T ss_pred CCcEEEEEEECCCCcEEEeCCcHHHHHHHHHHHH
Confidence 456899999988654 689999999888887754
No 64
>PRK08452 flagellar protein FlaG; Provisional
Probab=40.78 E-value=1.6e+02 Score=22.35 Aligned_cols=32 Identities=16% Similarity=0.168 Sum_probs=25.7
Q ss_pred CcEEEEEEEcCCC-cEEEcCHHHHHHHHHHhhc
Q 025897 213 SEIEVGVVSKENP-EFRVLSIEEIDEHLTAISE 244 (246)
Q Consensus 213 ~~iei~ii~~~~~-~~~~l~~~eI~~~l~~i~~ 244 (246)
+.+-|.+++.+.+ -.|.++++++=+++.++.+
T Consensus 82 ~~~vVkVvD~~T~eVIRqIP~Ee~L~l~~~m~e 114 (124)
T PRK08452 82 KGLVVSVKEANGGKVIREIPSKEAIELMEYMRD 114 (124)
T ss_pred CcEEEEEEECCCCceeeeCCCHHHHHHHHHHHH
Confidence 3588899998754 4889999999888887754
No 65
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=39.15 E-value=1.2e+02 Score=20.43 Aligned_cols=52 Identities=10% Similarity=0.189 Sum_probs=39.6
Q ss_pred CCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEcCCCcEEEcCHHHHHHHHHHhhc
Q 025897 187 PAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISE 244 (246)
Q Consensus 187 ~~~s~~ea~~l~~~~l~~~~~~d~~~~~iei~ii~~~~~~~~~l~~~eI~~~l~~i~~ 244 (246)
++++.++....+.+.+... ...+.+.+.+.+|..+...+.+++...++...+
T Consensus 20 ~~~s~~~L~~~i~~~~~~~------~~~~~l~Y~D~dgD~V~i~sd~Dl~~a~~~~~~ 71 (84)
T PF00564_consen 20 SDVSFDDLRSKIREKFGLL------DEDFQLKYKDEDGDLVTISSDEDLQEAIEQAKE 71 (84)
T ss_dssp STSHHHHHHHHHHHHHTTS------TSSEEEEEEETTSSEEEESSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCC------CccEEEEeeCCCCCEEEeCCHHHHHHHHHHHHh
Confidence 4567777777766666422 357999999999987888999999998887653
No 66
>PF14804 Jag_N: Jag N-terminus; PDB: 3GKU_B.
Probab=36.41 E-value=51 Score=20.90 Aligned_cols=28 Identities=25% Similarity=0.399 Sum_probs=19.5
Q ss_pred CCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEc
Q 025897 189 FTFQETVQTAISTLQSVLQEDFKASEIEVGVVSK 222 (246)
Q Consensus 189 ~s~~ea~~l~~~~l~~~~~~d~~~~~iei~ii~~ 222 (246)
-|++||++.|.+-|. +....+++-++.+
T Consensus 5 kt~eeAi~~A~~~l~------~~~~~~~~eVi~~ 32 (52)
T PF14804_consen 5 KTVEEAIEKALKELG------VPREELEYEVIEE 32 (52)
T ss_dssp SSHHHHHHHHHHHTT--------GGGEEEEEEE-
T ss_pred CCHHHHHHHHHHHhC------CChHHEEEEEEEc
Confidence 588999999887774 3333588888887
No 67
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=34.68 E-value=94 Score=25.57 Aligned_cols=46 Identities=15% Similarity=0.285 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhhhccCCCC-cEEEEEEEcCCCcEEEcCHHHHHHH
Q 025897 193 ETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLSIEEIDEH 238 (246)
Q Consensus 193 ea~~l~~~~l~~~~~~d~~~~-~iei~ii~~~~~~~~~l~~~eI~~~ 238 (246)
|++...+..|......|..+- .++|+||+-++.-....+.-++++|
T Consensus 22 ealN~Glq~m~~~Lkqdp~Ale~v~lsIVTF~~~a~~~~pf~~~~nF 68 (207)
T COG4245 22 EALNAGLQMMIDTLKQDPYALERVELSIVTFGGPARVIQPFTDAANF 68 (207)
T ss_pred HHHHHHHHHHHHHHHhChhhhheeEEEEEEecCcceEEechhhHhhc
Confidence 566666666766666776544 6999999999863333444555544
No 68
>COG4831 Roadblock/LC7 domain [Function unknown]
Probab=34.56 E-value=1.2e+02 Score=22.03 Aligned_cols=31 Identities=13% Similarity=0.262 Sum_probs=26.6
Q ss_pred CcEEEEEEEcCCCcEEEcCHHHHHHHHHHhhc
Q 025897 213 SEIEVGVVSKENPEFRVLSIEEIDEHLTAISE 244 (246)
Q Consensus 213 ~~iei~ii~~~~~~~~~l~~~eI~~~l~~i~~ 244 (246)
+..-+|++..-|. |-++++-++++++..+.+
T Consensus 78 g~yavci~Gn~GV-FVe~~kadf~kIfk~L~~ 108 (109)
T COG4831 78 GKYAVCIMGNVGV-FVELDKADFNKIFKTLRE 108 (109)
T ss_pred CceEEEEecceeE-EEEcchhhHHHHHHHHhc
Confidence 3688999998887 999999999999988765
No 69
>COG1334 FlaG Uncharacterized flagellar protein FlaG [Cell motility and secretion]
Probab=34.33 E-value=1.9e+02 Score=21.85 Aligned_cols=83 Identities=14% Similarity=0.242 Sum_probs=48.4
Q ss_pred CCcceeeceEEeecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhc---cC------CCCcEEEEEEEcCCC-
Q 025897 156 PAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQE---DF------KASEIEVGVVSKENP- 225 (246)
Q Consensus 156 ~~G~~~~~~~~a~G~g~~~a~~~Le~~~~~~~~~s~~ea~~l~~~~l~~~~~~---d~------~~~~iei~ii~~~~~- 225 (246)
.++.........++......+...++.. . .+|.++++.+=|...++. ++ ..+.+-|.+++++++
T Consensus 18 ~t~~~~~~~~~~~~~~~~~~~~~~~~~q----r--~~e~L~~~v~~ink~~k~~nt~l~F~~dd~lg~~vVkI~d~~Tge 91 (120)
T COG1334 18 VTRTILEQQSTNIQEVKEESKETIKKEQ----R--SKEKLALIVEDINKLLKSLNTHLNFSYDDELGELVVKIIDKDTGE 91 (120)
T ss_pred hhhhhhhhhhhcccccccchhhcchhhh----h--hHHHHHHHHHHHHHHHHhhcCceEEEEecccCcEEEEEEECCCCc
Confidence 3344444444455555544444433321 1 234555555555555443 22 234578889998865
Q ss_pred cEEEcCHHHHHHHHHHhhc
Q 025897 226 EFRVLSIEEIDEHLTAISE 244 (246)
Q Consensus 226 ~~~~l~~~eI~~~l~~i~~ 244 (246)
-.|.++|+++-+++.++.+
T Consensus 92 VIRqIPpee~L~l~~r~~d 110 (120)
T COG1334 92 VIRQIPPEEALELAARMRD 110 (120)
T ss_pred chhhCChHHHHHHHHHHHH
Confidence 4888999999999888764
No 70
>PF03928 DUF336: Domain of unknown function (DUF336); InterPro: IPR005624 This entry contains uncharacterised proteins, including GlcG P45504 from SWISSPROT. The alignment contains many conserved motifs that are suggestive of cofactor binding and enzymatic activity.; PDB: 2A2L_D 3FPW_A 3FPV_E.
Probab=31.62 E-value=61 Score=24.48 Aligned_cols=36 Identities=11% Similarity=0.314 Sum_probs=25.7
Q ss_pred CCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEcCCC
Q 025897 187 PAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENP 225 (246)
Q Consensus 187 ~~~s~~ea~~l~~~~l~~~~~~d~~~~~iei~ii~~~~~ 225 (246)
|.+|.++|.+++..++..+.++.. ++-|+||+..|.
T Consensus 1 p~l~~~~A~~l~~~a~~~a~~~g~---~v~iaVvd~~G~ 36 (132)
T PF03928_consen 1 PSLTLEDAWKLGDAAVEEARERGL---PVSIAVVDAGGH 36 (132)
T ss_dssp EEE-HHHHHHHHHHHHHHHHHTT------EEEEEETTS-
T ss_pred CCcCHHHHHHHHHHHHHHHHHhCC---CeEEEEEECCCC
Confidence 347899999999999998876543 378888888764
No 71
>KOG1930 consensus Focal adhesion protein Tensin, contains PTB domain [Signal transduction mechanisms; Cytoskeleton]
Probab=31.32 E-value=31 Score=31.71 Aligned_cols=19 Identities=11% Similarity=0.148 Sum_probs=15.9
Q ss_pred hhccCCCCCCHHHHHHHHHH
Q 025897 181 KKMKNDPAFTFQETVQTAIS 200 (246)
Q Consensus 181 ~~~~~~~~~s~~ea~~l~~~ 200 (246)
|.| |+|++|.||||.|.++
T Consensus 212 KyW-YKP~isREQAIalLrd 230 (483)
T KOG1930|consen 212 KYW-YKPNISREQAIALLRD 230 (483)
T ss_pred ccc-cCCCCCHHHHHHHhhc
Confidence 567 7999999999999554
No 72
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=30.86 E-value=77 Score=26.01 Aligned_cols=34 Identities=12% Similarity=-0.003 Sum_probs=27.0
Q ss_pred CCCHHHHHHHHHHHHHHHhhccCCCCccceeEEEEEcC
Q 025897 108 EMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDE 145 (246)
Q Consensus 108 ~~~~~~la~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~ 145 (246)
+-+|+.++..++..++.|.++++.+ .++|+||.-
T Consensus 44 ~rtP~~~a~Dl~~~i~~y~~~w~~~----~vvLiGYSF 77 (192)
T PF06057_consen 44 ERTPEQTAADLARIIRHYRARWGRK----RVVLIGYSF 77 (192)
T ss_pred hCCHHHHHHHHHHHHHHHHHHhCCc----eEEEEeecC
Confidence 5578999999999999999887754 346778853
No 73
>COG3411 Ferredoxin [Energy production and conversion]
Probab=30.59 E-value=1e+02 Score=20.53 Aligned_cols=26 Identities=15% Similarity=0.054 Sum_probs=21.3
Q ss_pred EEEcCCCcEEEcCHHHHHHHHHHhhc
Q 025897 219 VVSKENPEFRVLSIEEIDEHLTAISE 244 (246)
Q Consensus 219 ii~~~~~~~~~l~~~eI~~~l~~i~~ 244 (246)
++-.++.+++.++++.+++++++-..
T Consensus 21 ~vYpegvWY~~V~p~~a~rIv~~hl~ 46 (64)
T COG3411 21 VVYPEGVWYTRVDPEDARRIVQSHLL 46 (64)
T ss_pred EEecCCeeEeccCHHHHHHHHHHHHh
Confidence 45678888999999999999887543
No 74
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover. The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=30.43 E-value=2e+02 Score=20.37 Aligned_cols=50 Identities=14% Similarity=0.155 Sum_probs=37.8
Q ss_pred CCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEcCCCcEEEcCHHHHHHHHHHhh
Q 025897 189 FTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAIS 243 (246)
Q Consensus 189 ~s~~ea~~l~~~~l~~~~~~d~~~~~iei~ii~~~~~~~~~l~~~eI~~~l~~i~ 243 (246)
.+.++..+.+.+.+.. +...+|.|.|.+.+|..+.+-+.+|+...+....
T Consensus 27 ~s~~~L~~~V~~~f~~-----l~~~~ftlky~DeeGDlvtIssdeEL~~A~~~~~ 76 (87)
T cd06402 27 TSYEYLVEKVAAVFPS-----LRGKNFQLFWKDEEGDLVAFSSDEELVMALGSLN 76 (87)
T ss_pred cCHHHHHHHHHHHccc-----cCCCcEEEEEECCCCCEEeecCHHHHHHHHHcCC
Confidence 5667777776555532 2224799999999998899999999998887754
No 75
>TIGR03285 methan_mark_14 putative methanogenesis marker protein 14. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=29.07 E-value=1.5e+02 Score=27.01 Aligned_cols=100 Identities=13% Similarity=0.164 Sum_probs=62.1
Q ss_pred eEEEEEcCCCCcEEEEECCCcceeeceEEeecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhc-cCCCCcEE
Q 025897 138 AMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQE-DFKASEIE 216 (246)
Q Consensus 138 ~ll~G~d~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~a~~~Le~~~~~~~~~s~~ea~~l~~~~l~~~~~~-d~~~~~ie 216 (246)
.||.+-+- +...-|.++-.=.+.+. ...-..+.. -|=+..| .-.+|.|..-+++++.|.++.+. .++...++
T Consensus 16 cIltaTnl-~tgktY~inK~V~MTRd-VRpPk~gEe---vFG~Tl~--g~eLtresV~elV~dtl~e~~k~A~l~i~DL~ 88 (445)
T TIGR03285 16 CILTATNL-KTGKTYLLNKCVRMTRD-VRPPRSGEE---VFGKTVW--GVELTRESVAELVKDTLKESLKKAGLDIDDLD 88 (445)
T ss_pred EEEEeecc-CCCcEEEEeeeeeeecc-CCCCCCCCc---ccceeec--CccccHHHHHHHHHHHHHHHHHHcCCChhhcc
Confidence 45555554 34556666655555543 122223322 1122345 34689999999999999888765 34444555
Q ss_pred EEEEEcCCCcEEEcCHHHHHHHHHHhhcc
Q 025897 217 VGVVSKENPEFRVLSIEEIDEHLTAISER 245 (246)
Q Consensus 217 i~ii~~~~~~~~~l~~~eI~~~l~~i~~~ 245 (246)
. +|+..|...-.-+|||+..++..++++
T Consensus 89 F-VVRSTGV~Agf~speevg~~I~ALA~G 116 (445)
T TIGR03285 89 F-VVRSTGVTAGFASPEEVGEMIKALADG 116 (445)
T ss_pred E-EEeccceeeccCCHHHHHHHHHHHHhH
Confidence 4 567777655578999999999988763
No 76
>PF08289 Flu_M1_C: Influenza Matrix protein (M1) C-terminal domain; InterPro: IPR013188 Matrix protein (M1) of Influenza virus is a bifunctional membrane/RNA-binding protein that mediates the encapsidation of RNA-nucleoprotein cores into the membrane envelope. It is therefore required that M1 binds both membrane and RNA simultaneously. M1 is comprised of two domains connected by a linker sequence. The C-terminal domain contains alpha-helical structure and appears to be involved in growth and virulence of the virus [, ].; GO: 0003723 RNA binding, 0005198 structural molecule activity
Probab=29.01 E-value=2.1e+02 Score=20.12 Aligned_cols=51 Identities=20% Similarity=0.117 Sum_probs=40.2
Q ss_pred EecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccC
Q 025897 80 ATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAY 130 (246)
Q Consensus 80 ~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~ 130 (246)
.|--..|++.+.+.++..++--+-.--.+-+.+.|+..+-+.++.|..+.|
T Consensus 38 sseq~~e~~eiAsq~r~~i~amRsiGt~~~~~~Gl~dDlle~Lq~yQk~MG 88 (95)
T PF08289_consen 38 SSEQAAEAMEIASQARSMIQAMRSIGTHPKNSEGLADDLLENLQAYQKRMG 88 (95)
T ss_pred chHhHHHHHHHHHHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHHHHHHh
Confidence 344578999999999999988776656677778899999999988855443
No 77
>PF09887 DUF2114: Uncharacterized protein conserved in archaea (DUF2114); InterPro: IPR008303 There are currently no experimental data for members of this group or their homologues. The exact function of this protein is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=28.96 E-value=2e+02 Score=26.36 Aligned_cols=100 Identities=12% Similarity=0.120 Sum_probs=63.0
Q ss_pred eEEEEEcCCCCcEEEEECCCcceeeceEEeecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhc-cCCCC-cE
Q 025897 138 AMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQE-DFKAS-EI 215 (246)
Q Consensus 138 ~ll~G~d~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~a~~~Le~~~~~~~~~s~~ea~~l~~~~l~~~~~~-d~~~~-~i 215 (246)
.||.+-+- +...-|.++-.=.+.+. ...-..|.. -|=+..| .-.+|.|..-+++++.|.++.++ .++.. .+
T Consensus 18 cIltaTnl-~tgktYiinKtV~MTRD-VR~Pk~gEe---vFG~Tl~--g~eLTrEsV~elVrdtl~e~~k~A~l~i~~DL 90 (448)
T PF09887_consen 18 CILTATNL-ETGKTYIINKTVRMTRD-VRPPKPGEE---VFGKTLW--GVELTRESVAELVRDTLLESHKKAHLDIKKDL 90 (448)
T ss_pred EEEEeecc-CCCcEEEEeeeeeeecc-CCCCCCCcc---ccceeec--CccccHHHHHHHHHHHHHHHHHHcCCCccccc
Confidence 34444443 34456666655555532 222233322 1223445 34699999999999999988875 35544 46
Q ss_pred EEEEEEcCCCcEEEcCHHHHHHHHHHhhcc
Q 025897 216 EVGVVSKENPEFRVLSIEEIDEHLTAISER 245 (246)
Q Consensus 216 ei~ii~~~~~~~~~l~~~eI~~~l~~i~~~ 245 (246)
+. +|+..|...-.-+|||+..|+..++++
T Consensus 91 ~F-VVRSTGVvAgf~speevg~~I~ALA~G 119 (448)
T PF09887_consen 91 DF-VVRSTGVVAGFDSPEEVGEFIKALADG 119 (448)
T ss_pred eE-EEeecceeeccCCHHHHHHHHHHHHhh
Confidence 65 567777655678999999999988763
No 78
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=28.89 E-value=2.1e+02 Score=20.03 Aligned_cols=47 Identities=23% Similarity=0.261 Sum_probs=36.0
Q ss_pred CCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEcCCCcEEEcCHHHHHHHHHHh
Q 025897 188 AFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAI 242 (246)
Q Consensus 188 ~~s~~ea~~l~~~~l~~~~~~d~~~~~iei~ii~~~~~~~~~l~~~eI~~~l~~i 242 (246)
..+.++..+.+.+.+.. . .|.|.+++.++-++..-+..|+++.+.-.
T Consensus 21 ~~~~~~L~~ev~~rf~l------~--~f~lKYlDde~e~v~lssd~eLeE~~rl~ 67 (81)
T cd06396 21 NTTWASVEAMVKVSFGL------N--DIQIKYVDEENEEVSVNSQGEYEEALKSA 67 (81)
T ss_pred CCCHHHHHHHHHHHhCC------C--cceeEEEcCCCCEEEEEchhhHHHHHHHH
Confidence 45777777776655532 2 79999999999889999999999988743
No 79
>PRK09732 hypothetical protein; Provisional
Probab=28.61 E-value=1.6e+02 Score=22.66 Aligned_cols=37 Identities=5% Similarity=0.127 Sum_probs=29.8
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEcCCC
Q 025897 186 DPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENP 225 (246)
Q Consensus 186 ~~~~s~~ea~~l~~~~l~~~~~~d~~~~~iei~ii~~~~~ 225 (246)
.+.||++.|.+++..++..+.+... .+.|++++..|-
T Consensus 4 ~~~Ltl~~A~~~~~aA~~~A~~~g~---~v~iaVvD~~G~ 40 (134)
T PRK09732 4 KVILSQQMASAIIAAGQEEAQKNNW---SVSIAVADDGGH 40 (134)
T ss_pred cccCCHHHHHHHHHHHHHHHHHhCC---CEEEEEEcCCCC
Confidence 3569999999999999988875432 589999998774
No 80
>PF08529 NusA_N: NusA N-terminal domain; InterPro: IPR013735 This entry represents the N-terminal RNA polymerase-binding domain of bacterial transcription factors such as NusA (N-utilising substance A). NusA is involved in transcriptional pausing, termination and anti-termination. NusA from Thermotoga maritima contains an N-terminal domain and three RNA-binding domains (one S1 domain and two KH domains). The N-terminal domain consists of a bifurcated coiled beta-sheet within an alpha/beta(3)/alpha/beta/alpha fold, which can be divided into two subdomains: a globular head and a helical body. The globular head subdomain may interact with RNA polymerase, while the helical body displays a similar structure to that of the helical domain in sigma70 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0031554 regulation of transcription termination, DNA-dependent; PDB: 1K0R_B 1HH2_P 1L2F_A 2KWP_A.
Probab=27.82 E-value=2.2e+02 Score=21.21 Aligned_cols=43 Identities=12% Similarity=0.283 Sum_probs=31.7
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhccCCCC-cEEEEEEEcCCCcEEE
Q 025897 186 DPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRV 229 (246)
Q Consensus 186 ~~~~s~~ea~~l~~~~l~~~~~~d~~~~-~iei~ii~~~~~~~~~ 229 (246)
..+++.+..++....||..+..+..... ++++ .|+.+.+.++.
T Consensus 12 ek~i~~e~v~~ale~al~~a~kK~~~~~~~~~v-~id~~~g~i~v 55 (122)
T PF08529_consen 12 EKGIDKEVVIEALEEALIKAYKKKYGPEANIRV-EIDEDTGEIKV 55 (122)
T ss_dssp CCTB-HHHHHHHHHHHHHHHHHCCTTSSSSEEE-EEETTTTEEEE
T ss_pred HhCcCHHHHHHHHHHHHHHHHHHhhCCCCCEEE-EEECCCCeEEE
Confidence 4579999999999999999998876444 7777 45666554554
No 81
>PF01458 UPF0051: Uncharacterized protein family (UPF0051); InterPro: IPR000825 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents SufB and SufD proteins that form part of the SufBCD complex in the SUF system. No specific functions have been assigned to these proteins.; GO: 0016226 iron-sulfur cluster assembly; PDB: 1VH4_B 2ZU0_A 4DN7_A.
Probab=26.97 E-value=1.7e+02 Score=24.24 Aligned_cols=47 Identities=15% Similarity=0.301 Sum_probs=32.0
Q ss_pred cEEEEECCCcceeeceEEeecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHH
Q 025897 149 PRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTL 202 (246)
Q Consensus 149 p~Ly~id~~G~~~~~~~~a~G~g~~~a~~~Le~~~~~~~~~s~~ea~~l~~~~l 202 (246)
|.| .++..-. .....+++|.=.+...-+|..+ +++.+||.+|++++|
T Consensus 183 P~L-eI~~~dV-~a~H~AtvG~idee~LFYL~SR-----Gl~~~eA~~Liv~gF 229 (229)
T PF01458_consen 183 PEL-EIDEDDV-KASHGATVGQIDEEQLFYLMSR-----GLSEEEARKLIVKGF 229 (229)
T ss_dssp EEE-EE-SSSE-EEEEEEEEEES-HHHHHHHHCT-----T--HHHHHHHHHHHH
T ss_pred EhH-hcccCCc-EEEEeeEeecCCHHHHHHHHHc-----CCCHHHHHHHHHhhC
Confidence 655 3444333 3346788899999999999974 699999999998875
No 82
>PF13983 YsaB: YsaB-like lipoprotein
Probab=26.49 E-value=40 Score=22.75 Aligned_cols=21 Identities=14% Similarity=0.433 Sum_probs=16.2
Q ss_pred CCCCCCCcccceeCCCCccch
Q 025897 4 GSGGGYDRHITIFSPEGRLFQ 24 (246)
Q Consensus 4 ~~~~~yd~~~t~f~p~Gr~~Q 24 (246)
|.+++-+..++.|.|||+.+-
T Consensus 53 G~T~r~E~FvCSFD~dGqFLH 73 (77)
T PF13983_consen 53 GYTARKEGFVCSFDADGQFLH 73 (77)
T ss_pred cccccccceEEeECCCCcEEE
Confidence 445566778999999999764
No 83
>PF09702 Cas_Csa5: CRISPR-associated protein (Cas_Csa5); InterPro: IPR010157 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor family of Cas protein found in various species of Sulfolobus and Pyrococcus (all archaeal). It is found with two different CRISPR loci in Sulfolobus solfataricus.
Probab=24.59 E-value=1.9e+02 Score=21.27 Aligned_cols=64 Identities=13% Similarity=0.268 Sum_probs=35.0
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHhh---hcc-CCC-----CcEEEEEE--EcCCCcEEE----cCHHHHHHHHHH
Q 025897 177 NFLEKKMKNDPAFTFQETVQTAISTLQSVL---QED-FKA-----SEIEVGVV--SKENPEFRV----LSIEEIDEHLTA 241 (246)
Q Consensus 177 ~~Le~~~~~~~~~s~~ea~~l~~~~l~~~~---~~d-~~~-----~~iei~ii--~~~~~~~~~----l~~~eI~~~l~~ 241 (246)
+++++.- -.+|.|.++.....|++... ++. +.. ++.-+.+. +++| .... =+++||+.||+.
T Consensus 9 ~~vDRia---NALs~E~v~~aL~dAlR~~~s~~~s~ei~~~~~~~~~~y~~v~~~ekeg-~~i~~g~lPt~~eVe~Fl~~ 84 (105)
T PF09702_consen 9 TYVDRIA---NALSPEAVEVALYDALRIFRSIIDSAEIDKSQVEEGRRYIAVIVKEKEG-NYIIVGYLPTDEEVEDFLDD 84 (105)
T ss_pred cHHHHHH---hhcCHHHHHHHHHHHHHHHHHHhccccccccccccCccccceeeccCCC-CEEecCCCCChHHHHHHHHH
Confidence 4566652 24888887777777766543 221 222 22222222 3334 2443 345889999998
Q ss_pred hhc
Q 025897 242 ISE 244 (246)
Q Consensus 242 i~~ 244 (246)
+++
T Consensus 85 v~~ 87 (105)
T PF09702_consen 85 VER 87 (105)
T ss_pred HHH
Confidence 764
No 84
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=24.21 E-value=1.3e+02 Score=25.96 Aligned_cols=56 Identities=13% Similarity=0.082 Sum_probs=37.4
Q ss_pred ceeE--EEEEcCCCCcEEEEECCCcceeec---eEEeecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHH
Q 025897 136 VVAM--VLSIDEECGPRLFKCDPAGHFFGH---KATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAIST 201 (246)
Q Consensus 136 v~~l--l~G~d~~~gp~Ly~id~~G~~~~~---~~~a~G~g~~~a~~~Le~~~~~~~~~s~~ea~~l~~~~ 201 (246)
+..+ ++|.|. .+..+|..|.+..+ +.||.|.|+ |......+ =+++++|.-+++.++
T Consensus 98 ~~tIiDIGGQD~----K~I~~~~~G~v~~f~MNdkCAAGTG~-FLe~~A~~-----L~i~leel~~~a~~~ 158 (262)
T TIGR02261 98 ARAVLDIGALHG----RAIRMDERGKVEAYKMTSQCASGSGQ-FLENIARY-----LGIAQDEIGSLSQQA 158 (262)
T ss_pred CCEEEEeCCCce----EEEEEcCCCcEeeEEecCcccccccH-HHHHHHHH-----hCCCHHHHHHHHhcC
Confidence 4444 577775 47788999988744 578889995 34333333 358888887776555
No 85
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=23.81 E-value=88 Score=25.16 Aligned_cols=39 Identities=31% Similarity=0.329 Sum_probs=26.0
Q ss_pred cceeCCCCccchhccHHHHHhccCceEEEEEcCCeEEEE
Q 025897 13 ITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVV 51 (246)
Q Consensus 13 ~t~f~p~Gr~~Q~eya~~av~~~G~t~vgi~~~dgvvla 51 (246)
+--+|+.|.-.-|=-|.++.+..|-++||++++||--++
T Consensus 113 LigISTSGNS~nVl~Ai~~Ak~~gm~vI~ltG~~GG~~~ 151 (176)
T COG0279 113 LIGISTSGNSKNVLKAIEAAKEKGMTVIALTGKDGGKLA 151 (176)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHcCCEEEEEecCCCcccc
Confidence 345677776544444444444469999999999997665
No 86
>PF04539 Sigma70_r3: Sigma-70 region 3; InterPro: IPR007624 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 3 forms a discrete compact three helical domain within the sigma-factor. Region is not normally involved in the recognition of promoter DNA, but in some specific bacterial promoters containing an extended -10 promoter element, residues within region 3 play an important role. Region 3 primarily is involved in binding the core RNA polymerase in the holoenzyme [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1L0O_C 1KU2_B 1RP3_C 1SC5_A 1TTY_A 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P ....
Probab=23.23 E-value=1.7e+02 Score=19.45 Aligned_cols=35 Identities=11% Similarity=0.092 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 025897 91 VQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVY 125 (246)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~ 125 (246)
.+.+++........+|+.++.+.+|..+.-....+
T Consensus 3 l~~i~~a~~~L~~~lgr~Pt~eEiA~~lgis~~~v 37 (78)
T PF04539_consen 3 LRKIERARRELEQELGREPTDEEIAEELGISVEEV 37 (78)
T ss_dssp HHHHHHHHHHHHHHHSS--BHHHHHHHHTS-HHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHcccHHHH
Confidence 34555555666778899999999999876544433
No 87
>cd00475 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase) catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidooglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS are mechanistically and structurally distinct from trans-IPPS, lacking the DDXXD motifs, yet requiring Mg2+ for activity.
Probab=22.61 E-value=1.7e+02 Score=24.58 Aligned_cols=52 Identities=19% Similarity=0.272 Sum_probs=36.0
Q ss_pred CCCHHHHHHHHHHHHHHhhhc--cCCCCcEEEEEEEcCCCcEEEcCHHHHHHHHHHh
Q 025897 188 AFTFQETVQTAISTLQSVLQE--DFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAI 242 (246)
Q Consensus 188 ~~s~~ea~~l~~~~l~~~~~~--d~~~~~iei~ii~~~~~~~~~l~~~eI~~~l~~i 242 (246)
+++..++-....+.+..+... +.....+.++.++.++ |+ -+++||+.++.-+
T Consensus 19 gl~~~~GH~~G~~~~~~i~~~~~~~gI~~lTvyaFS~eN--~~-R~~~EV~~Lm~l~ 72 (221)
T cd00475 19 GMDRIEGHKAGAEKLRDILRWCLELGVKEVTLYAFSTEN--WK-RPKEEVDFLMELF 72 (221)
T ss_pred CCChhHhHHHHHHHHHHHHHHHHHcCCCEEEEEeechhh--hC-cCHHHHHHHHHHH
Confidence 467777777777777666653 3444568999999887 54 5899988766543
No 88
>TIGR00055 uppS undecaprenyl diphosphate synthase. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.
Probab=22.48 E-value=1.7e+02 Score=24.68 Aligned_cols=52 Identities=15% Similarity=0.194 Sum_probs=35.9
Q ss_pred CCCHHHHHHHHHHHHHHhhhc--cCCCCcEEEEEEEcCCCcEEEcCHHHHHHHHHHh
Q 025897 188 AFTFQETVQTAISTLQSVLQE--DFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAI 242 (246)
Q Consensus 188 ~~s~~ea~~l~~~~l~~~~~~--d~~~~~iei~ii~~~~~~~~~l~~~eI~~~l~~i 242 (246)
+++..+.-....+.++.+.+. ++....+.++.++.++ |+ -+++||+.++.=+
T Consensus 18 gl~~~~GH~~G~~~~~~v~~~c~~~GI~~lT~yaFStEN--~~-Rp~~EV~~Lm~L~ 71 (226)
T TIGR00055 18 GKPRAYGHKAGVKSLRRILRWCANLGVECLTLYAFSTEN--WK-RPKEEVDFLMELF 71 (226)
T ss_pred CCChhHhHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhh--cC-cCHHHHHHHHHHH
Confidence 466667777777777666653 3444568999999887 54 5899988776543
No 89
>PF01242 PTPS: 6-pyruvoyl tetrahydropterin synthase; InterPro: IPR007115 The complex organic chemistry involved in the transformation of GTP to tetrahydrobiopterin is catalysed by only three enzymes: GTP cyclohydrolase I, 6-pyruvoyltetrahydropterin synthase and sepiapterin reductase. Tetrahydrobiopterin is the cofactor for several aromatic amino acid monooxygenases and the nitric oxide synthases. 6-Pyruvoyl tetrahydropterin synthase (PTPS) [] is a Zn-dependent metalloprotein, transforms dihydroneopterin triphosphate into 6-pyruvoyltetrahydropterin in the presence of Mg(II) and for which the crystal structure is known. The enzyme is a homohexameric, composed of a dimer of trimers. A transition metal binding site formed by the three histidine residues 23, 48 and 50 is present in each subunit, and bound Zn(II) is responsible for the enzymatic activity. Site-directed mutagenesis of each of these three histidine residues results in a complete loss of metal binding and enzymatic activity [, ]. The function of the bacterial branch of the sequence lineage appears not to have been established.; GO: 0003874 6-pyruvoyltetrahydropterin synthase activity, 0046872 metal ion binding, 0006729 tetrahydrobiopterin biosynthetic process; PDB: 3QNA_E 3QN9_A 3QN0_B 1Y13_C 3D7J_A 3I2B_J 2OBA_D 3M0N_A 2A0S_A 3LZE_A ....
Probab=20.37 E-value=1.4e+02 Score=22.00 Aligned_cols=46 Identities=20% Similarity=0.328 Sum_probs=29.4
Q ss_pred ecchHHHHHHHHHHHHHHHHHH--HHh----CC----CCCHHHHHHHHHHHHHHHh
Q 025897 81 TGMTADARTLVQQARYEAAEFR--FKY----GY----EMPVDVLAKWIADKSQVYT 126 (246)
Q Consensus 81 sG~~~D~~~l~~~~~~~~~~~~--~~~----~~----~~~~~~la~~l~~~~~~~~ 126 (246)
.|+.-|+..+.+.++..+..+- +-+ .. .++++.+|.++.+.+....
T Consensus 43 ~g~v~DF~~lk~~~~~i~~~lDh~~Ln~~~~~~~~~~~pT~E~lA~~i~~~l~~~l 98 (123)
T PF01242_consen 43 DGMVVDFGDLKKIIKEIDDQLDHKFLNEDDPEFDDINNPTAENLARWIFERLKEKL 98 (123)
T ss_dssp TSSSS-HHHHHHHHHHHHHHHTTEEGGHHSGCGCSSTS--HHHHHHHHHHHHHHHH
T ss_pred CCEEEEHHHHHHHHHHHHHHhCcccccCCChhhhccCCCCHHHHHHHHHHHHHHHh
Confidence 4777788888888887554332 111 11 1789999999999997654
Done!