Query 025897
Match_columns 246
No_of_seqs 111 out of 1089
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 20:05:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025897.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025897hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iru_A 20S proteasome; cell cy 100.0 1.3E-64 4.5E-69 430.4 30.3 246 1-246 1-246 (246)
2 1ryp_A 20S proteasome; multica 100.0 2.7E-64 9.2E-69 427.8 28.1 238 7-246 1-243 (243)
3 3h4p_A Proteasome subunit alph 100.0 3.4E-64 1.2E-68 431.4 21.6 240 1-245 4-243 (264)
4 1iru_B 20S proteasome; cell cy 100.0 2.3E-62 7.9E-67 413.5 28.8 231 7-243 3-233 (233)
5 1iru_C 20S proteasome; cell cy 100.0 4.6E-62 1.6E-66 418.0 29.3 236 7-245 3-243 (261)
6 1ryp_C 20S proteasome; multica 100.0 8.6E-62 3E-66 412.6 30.2 234 8-244 4-243 (244)
7 1yar_A Proteasome alpha subuni 100.0 9.4E-62 3.2E-66 409.7 27.1 228 7-239 6-233 (233)
8 1ryp_D 20S proteasome; multica 100.0 2.2E-61 7.7E-66 409.4 29.2 234 8-245 1-237 (241)
9 1iru_G 20S proteasome; cell cy 100.0 3.1E-61 1.1E-65 411.3 27.9 235 6-243 4-240 (254)
10 1j2p_A Alpha-ring, proteasome 100.0 7.3E-61 2.5E-65 407.3 30.1 231 7-244 6-238 (246)
11 1iru_D 20S proteasome; cell cy 100.0 2.6E-61 9E-66 410.5 26.2 232 9-246 3-236 (248)
12 1ryp_B 20S proteasome; multica 100.0 9.7E-61 3.3E-65 407.5 29.0 233 7-242 3-250 (250)
13 1iru_E 20S proteasome; cell cy 100.0 4.4E-61 1.5E-65 407.5 25.8 231 7-242 6-241 (241)
14 1ryp_E 20S proteasome; multica 100.0 5.4E-61 1.8E-65 407.3 24.9 232 10-245 1-238 (242)
15 1iru_F 20S proteasome; cell cy 100.0 1.3E-60 4.3E-65 409.4 25.7 233 7-244 4-238 (263)
16 3nzj_F Proteasome component C1 100.0 3.8E-60 1.3E-64 410.0 28.8 231 6-238 5-239 (288)
17 1ryp_G 20S proteasome; multica 100.0 1.7E-59 5.9E-64 398.3 28.7 231 7-243 2-239 (244)
18 1ryp_F 20S proteasome; multica 100.0 2.2E-60 7.4E-65 401.4 22.1 226 8-239 4-233 (233)
19 1q5q_A Proteasome alpha-type s 100.0 3.8E-51 1.3E-55 349.7 22.0 221 13-245 4-238 (259)
20 3mi0_A Proteasome subunit alph 100.0 3.3E-49 1.1E-53 335.1 26.9 208 24-243 16-238 (248)
21 3h4p_a Proteasome subunit beta 100.0 2.2E-48 7.6E-53 325.1 24.2 203 36-246 1-206 (219)
22 1yar_H Proteasome beta subunit 100.0 9.4E-47 3.2E-51 314.8 26.2 204 30-243 3-208 (217)
23 1j2q_H Proteasome beta subunit 100.0 1.6E-46 5.5E-51 310.1 25.4 198 37-243 1-201 (202)
24 2jay_A Proteasome; hydrolase; 100.0 5E-47 1.7E-51 328.5 23.0 233 6-245 22-277 (291)
25 1q5r_H Proteasome beta-type su 100.0 2.6E-46 9E-51 324.2 25.4 212 28-245 58-285 (294)
26 3nzj_K Proteasome component PR 100.0 8.6E-47 2.9E-51 326.3 22.2 211 26-245 66-278 (287)
27 1q5q_H Proteasome beta-type su 100.0 8.6E-46 3E-50 312.5 25.3 204 37-245 1-220 (235)
28 1ryp_L 20S proteasome; multica 100.0 3.6E-46 1.2E-50 310.2 22.6 201 37-245 1-203 (212)
29 1iru_L 20S proteasome; cell cy 100.0 1.1E-45 3.8E-50 305.5 22.9 199 37-244 1-201 (204)
30 1iru_H 20S proteasome; cell cy 100.0 3E-46 1E-50 309.2 19.1 198 37-241 1-200 (205)
31 1iru_N 20S proteasome; cell cy 100.0 4.2E-46 1.4E-50 311.3 17.0 204 30-239 3-209 (219)
32 1ryp_N 20S proteasome; multica 100.0 3.7E-46 1.3E-50 314.4 15.3 203 30-238 3-217 (233)
33 1iru_M 20S proteasome; cell cy 100.0 1.2E-43 4.3E-48 295.1 24.9 189 35-227 8-205 (213)
34 1ryp_H 20S proteasome; multica 100.0 2.2E-44 7.4E-49 298.0 20.2 193 29-230 3-197 (205)
35 1g0u_M Proteasome component PR 100.0 1.8E-45 6.3E-50 315.7 13.7 208 25-238 31-250 (266)
36 1ryp_K 20S proteasome; multica 100.0 1.1E-43 3.6E-48 292.3 23.6 190 37-232 2-194 (198)
37 3unf_N Proteasome subunit beta 100.0 2.1E-44 7.2E-49 296.7 17.7 195 37-240 1-198 (199)
38 3nzj_H Proteasome component PU 100.0 3.1E-43 1.1E-47 300.5 25.2 191 29-229 23-215 (261)
39 3unf_H Proteasome subunit beta 100.0 1.3E-43 4.3E-48 298.7 21.7 191 37-237 1-193 (234)
40 1ryp_M 20S proteasome; multica 100.0 4.9E-43 1.7E-47 293.3 24.3 189 35-227 8-214 (222)
41 1iru_J 20S proteasome; cell cy 100.0 6.3E-43 2.2E-47 289.2 24.4 191 35-231 7-201 (205)
42 1iru_K 20S proteasome; cell cy 100.0 7.2E-43 2.5E-47 288.0 22.9 189 37-231 2-192 (201)
43 1ryp_J 20S proteasome; multica 100.0 1.6E-42 5.5E-47 286.5 25.0 191 34-231 6-200 (204)
44 1ryp_I 20S proteasome; multica 100.0 4E-42 1.4E-46 287.7 24.2 185 37-230 1-187 (222)
45 1iru_I 20S proteasome; cell cy 100.0 3.3E-41 1.1E-45 284.2 23.9 186 37-232 1-188 (234)
46 2z3b_A ATP-dependent protease 100.0 3.4E-35 1.2E-39 238.1 17.6 167 35-220 4-179 (180)
47 1m4y_A ATP-dependent protease 100.0 1.1E-34 3.7E-39 233.3 17.8 166 37-220 1-171 (171)
48 1g3k_A ATP-dependent protease 100.0 1.8E-34 6.3E-39 232.6 17.8 167 37-221 1-173 (174)
49 1yo5_C SAM pointed domain cont 58.9 15 0.00051 25.6 4.5 29 217-245 31-59 (97)
50 1vd2_A Protein kinase C, IOTA 54.6 35 0.0012 23.3 5.8 51 186-241 23-73 (89)
51 2dao_A Transcription factor ET 50.6 19 0.00065 26.0 4.0 29 217-245 28-56 (118)
52 2hc5_A ORF 99, hypothetical pr 50.4 34 0.0012 24.6 5.4 33 212-244 66-99 (117)
53 3jtg_A ETS-related transcripti 45.7 31 0.0011 24.3 4.5 28 217-244 25-52 (103)
54 1wwx_A E74-like factor 5 ESE-2 40.9 27 0.00092 24.8 3.5 26 217-242 29-54 (107)
55 3hvz_A Uncharacterized protein 32.9 23 0.0008 23.4 2.0 38 9-46 4-48 (78)
56 1hbx_G ETS-domain protein ELK- 31.5 45 0.0015 25.3 3.6 28 217-245 25-52 (157)
57 3c2i_A Methyl-CPG-binding prot 27.7 77 0.0026 22.0 4.0 29 212-242 41-69 (97)
58 3jx9_A Putative phosphoheptose 26.9 37 0.0013 26.0 2.6 32 12-44 80-112 (170)
59 1bc8_C SAP-1, protein (SAP-1 E 25.8 30 0.001 23.9 1.6 27 217-244 24-50 (93)
60 3rj2_X ORF158L protein, putati 25.5 18 0.00062 26.1 0.5 16 8-23 54-69 (138)
61 1fli_A FLI-1; transcription/DN 25.2 34 0.0012 23.9 1.8 27 217-244 25-51 (98)
62 3vxv_A Methyl-CPG-binding doma 25.1 1E+02 0.0034 19.8 4.0 29 212-242 23-51 (69)
63 1pue_E Protein (transcription 23.2 1.3E+02 0.0045 20.4 4.5 27 217-243 21-49 (89)
64 3kol_A Oxidoreductase, glyoxal 22.7 1E+02 0.0035 21.5 4.3 20 147-166 132-151 (156)
65 1awc_A Protein (GA binding pro 21.2 41 0.0014 24.0 1.6 28 217-245 20-47 (110)
66 4avp_A ETS translocation varia 21.1 71 0.0024 22.5 2.9 28 217-245 31-58 (106)
67 3fpw_A HBPS, extracellular HAE 20.9 1.6E+02 0.0055 23.0 5.2 37 186-225 62-98 (192)
68 2yxo_A Histidinol phosphatase; 20.4 56 0.0019 26.1 2.6 33 14-47 8-40 (267)
No 1
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=100.00 E-value=1.3e-64 Score=430.43 Aligned_cols=246 Identities=64% Similarity=1.024 Sum_probs=229.9
Q ss_pred CCCCCCCCCCcccceeCCCCccchhccHHHHHhccCceEEEEEcCCeEEEEEeccCCcCccccCCceeeEEecCeEEEEE
Q 025897 1 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLA 80 (246)
Q Consensus 1 ~~~~~~~~yd~~~t~f~p~Gr~~Q~eya~~av~~~G~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~ 80 (246)
|.|.++++||+++|+||||||++|||||.++++++|+|+|||+++||||||+|++.+++++.+++.+||++|++++++++
T Consensus 1 ~~m~~~~~yd~~~t~fsp~Grl~QvEya~~av~~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~ 80 (246)
T 1iru_A 1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCVM 80 (246)
T ss_dssp -CCSCCCTTTTTSSCCCTTSCCHHHHHHHHHHHTTCCEEEEEECSSEEEEEEECCCCCSSBCGGGCCSEEESSSSCEEEE
T ss_pred CCCCccCCcCCCCccCCCCCeehHHHHHHHHHhcCCCCEEEEEeCCEEEEEEeecCCCcccCCCccCceEEECCCEEEEE
Confidence 55556678999999999999999999999999944999999999999999999999988888889999999999999999
Q ss_pred ecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCcce
Q 025897 81 TGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHF 160 (246)
Q Consensus 81 sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~ 160 (246)
+|+.+|++.|.++++.+++.|+++++++++++.+++.+++.+|.|+++.+.|||++++||+|||+++||+||.+||+|++
T Consensus 81 aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~ 160 (246)
T 1iru_A 81 TGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYY 160 (246)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSBCCCSEEEEEEEEETTTEEEEEEECTTSCE
T ss_pred eccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCCCCcceEEEEEEEeCCCCeEEEEEcCCeeE
Confidence 99999999999999999999999999999999999999999999999888999999999999997578999999999999
Q ss_pred eeceEEeecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEcCCCcEEEcCHHHHHHHHH
Q 025897 161 FGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLT 240 (246)
Q Consensus 161 ~~~~~~a~G~g~~~a~~~Le~~~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~~~iei~ii~~~~~~~~~l~~~eI~~~l~ 240 (246)
.+++++|+|+++++++++||+.|++.++||++||++++++||..+.++|.+..+++|++|++++.+|++++++||++++.
T Consensus 161 ~~~~~~aiG~gs~~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~rd~sg~~i~v~vi~~~g~~~~~l~~~ei~~~~~ 240 (246)
T 1iru_A 161 CGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLV 240 (246)
T ss_dssp EEBSEEEEETTHHHHHHHHHHHTTSCCCCCHHHHHHHHHHHHHHHTTCCCCTTSEEEEEEETTEEEEEECCHHHHHHHHH
T ss_pred EEeeEEEECCCcHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEECCCCeEEECCHHHHHHHHH
Confidence 99999999999999999999998433399999999999999999999994444899999999987799999999999999
Q ss_pred HhhccC
Q 025897 241 AISERD 246 (246)
Q Consensus 241 ~i~~~~ 246 (246)
+|+++|
T Consensus 241 ~~~~~~ 246 (246)
T 1iru_A 241 ALAERD 246 (246)
T ss_dssp HHHTC-
T ss_pred HhhccC
Confidence 999886
No 2
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=100.00 E-value=2.7e-64 Score=427.78 Aligned_cols=238 Identities=52% Similarity=0.859 Sum_probs=225.4
Q ss_pred CCCCcccceeCCCCccchhccHHHHHhccCceEEEEEcCCeEEEEEeccCCcCccccCCceeeEEecCeEEEEEecchHH
Q 025897 7 GGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 86 (246)
Q Consensus 7 ~~yd~~~t~f~p~Gr~~Q~eya~~av~~~G~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D 86 (246)
++||+++|+|||||||||||||.||++++|+|+|||+++||||||+|++.+++++.+++.+||++|++|++|+++|+.+|
T Consensus 1 ~~yd~~~t~fsp~Grl~QvEYA~~av~~~Gtt~vgi~~~dgVvlaad~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD 80 (243)
T 1ryp_A 1 AGYDRHITIFSPEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTVSYIFCISRTIGMVVNGPIPD 80 (243)
T ss_dssp CGGGGTSSSCCTTSCCHHHHHHHHHTTTTCCCEEEEECSSEEEEEEECCCCCTTBCGGGCCSEEECSSSCEEEEESCHHH
T ss_pred CCCCCCCceECCCCeeHHHHHHHHHHhcCCCcEEEEEeCCEEEEEEEecCCccccCCCcCCceEEECCCEEEEEEecHHH
Confidence 37999999999999999999999999933999999999999999999999999988889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCcceeeceEE
Q 025897 87 ARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKAT 166 (246)
Q Consensus 87 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~ 166 (246)
++.|.+.++.+++.|+++++++++++.+++++++.+|.|+++++.|||++++||+|||+++||+||.+||+|++.+++++
T Consensus 81 ~~~l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~l~~y~~~~~~rP~~v~~lvaG~D~~~gp~Ly~~dp~G~~~~~~~~ 160 (243)
T 1ryp_A 81 ARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKAT 160 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEETTTEEEEEEECTTSCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccccceEEEEEEEcCCCCcEEEEEcCCCCEEEEEEE
Confidence 99999999999999999999999999999999999999999888999999999999997578999999999999999999
Q ss_pred eecCChHHHHHHHHhhccCCC-----CCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEcCCCcEEEcCHHHHHHHHHH
Q 025897 167 SAGLKEQEAINFLEKKMKNDP-----AFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTA 241 (246)
Q Consensus 167 a~G~g~~~a~~~Le~~~~~~~-----~~s~~ea~~l~~~~l~~~~~~d~~~~~iei~ii~~~~~~~~~l~~~eI~~~l~~ 241 (246)
|+|++++.++++||+.|++.+ +||++||++++++||..+.++|.+..+++|++|++++ |++++++||++++.+
T Consensus 161 a~G~gs~~a~~~Le~~~~~~~~~~~~~ms~eea~~l~~~al~~~~~rd~s~~~iev~vi~~~g--~~~l~~~ei~~~~~~ 238 (243)
T 1ryp_A 161 ATGPKQQEITTNLENHFKKSKIDHINEESWEKVVEFAITHMIDALGTEFSKNDLEVGVATKDK--FFTLSAENIEERLVA 238 (243)
T ss_dssp EESTTHHHHHHHHHHHHHHHCSSSCCCSSHHHHHHHHHHHHHHHHTCCCCTTSEEEEEEETTE--EEECCHHHHHHHHHH
T ss_pred EECCCcHHHHHHHHHHhhhcccccccCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEECCC--eEECCHHHHHHHHHH
Confidence 999999999999999994211 8999999999999999999999654589999999987 999999999999999
Q ss_pred hhccC
Q 025897 242 ISERD 246 (246)
Q Consensus 242 i~~~~ 246 (246)
|+|+|
T Consensus 239 ~~~~~ 243 (243)
T 1ryp_A 239 IAEQD 243 (243)
T ss_dssp HTTTC
T ss_pred hhccC
Confidence 99986
No 3
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=3.4e-64 Score=431.38 Aligned_cols=240 Identities=36% Similarity=0.637 Sum_probs=217.3
Q ss_pred CCCCCCCCCCcccceeCCCCccchhccHHHHHhccCceEEEEEcCCeEEEEEeccCCcCccccCCceeeEEecCeEEEEE
Q 025897 1 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLA 80 (246)
Q Consensus 1 ~~~~~~~~yd~~~t~f~p~Gr~~Q~eya~~av~~~G~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~ 80 (246)
|.|.++++||+++|+|||+|||||||||.+|++ +|+|+|||+++||||||+|++.+.+++..++.+||++|++|++|++
T Consensus 4 ~~~~~~~~yd~~~t~fSp~Grl~QvEYA~~av~-~Gtt~vgi~~~dgVVlaaD~r~~~~li~~~~~~KI~~i~d~i~~~~ 82 (264)
T 3h4p_A 4 MQMVPPSAYDRAITVFSPEGRLYQVEYAREAVR-RGTTAIGIACKDGVVLAVDRRITSKLVKIRSIEKIFQIDDHVAAAT 82 (264)
T ss_dssp ------------CCCCCSSSSCHHHHHHHHHHH-HSCCEEEECCSSEEEEEEECCCCSTTBCTTTCCCEEEEETTEEEEE
T ss_pred CcCCCccccCCCcceECCCCeeHHHHhHHHHHh-cCCcEEEEEECCEEEEEEecCccCCccccCccccEEEecCcEEEEe
Confidence 677788899999999999999999999999999 5999999999999999999999977888889999999999999999
Q ss_pred ecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCcce
Q 025897 81 TGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHF 160 (246)
Q Consensus 81 sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~ 160 (246)
+|+.+|++.|.++++.+++.|+++++++++++.+++.+++.++.|+++++.|||++++||+|||+ +||+||.+||+|++
T Consensus 83 aG~~aD~~~l~~~~r~~~~~y~~~~~~~i~v~~la~~l~~~~~~yt~~~~~rP~~v~~lvaG~D~-~gp~Ly~iDp~G~~ 161 (264)
T 3h4p_A 83 SGLVADARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDK-NEARLFETDPSGAL 161 (264)
T ss_dssp EECSHHHHHHHTTHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHTTSBSSCCCCSEEEEEEEEET-TEEEEEEECTTCCC
T ss_pred ccchHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCCeeEEEEEEEEeC-CcCEEEEECCCceE
Confidence 99999999999999999999999999999999999999999999999889999999999999996 79999999999999
Q ss_pred eeceEEeecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEcCCCcEEEcCHHHHHHHHH
Q 025897 161 FGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLT 240 (246)
Q Consensus 161 ~~~~~~a~G~g~~~a~~~Le~~~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~~~iei~ii~~~~~~~~~l~~~eI~~~l~ 240 (246)
.+++++|+|+++++++++||+.| +++||++||++++++||..+.++ .+..+++|++|++++..|++++++||++++.
T Consensus 162 ~~~~~~aiGsgs~~a~~~Le~~~--~~~ms~eea~~la~~al~~a~~~-~sg~~iev~vi~~~~~~~~~l~~~ei~~~~~ 238 (264)
T 3h4p_A 162 IEYKATAIGSGRPVVMELLEKEY--RDDITLDEGLELAITALTKANED-IKPENVDVCIITVKDAQFKKIPVEEIKKLIE 238 (264)
T ss_dssp EEESEEEESTTHHHHTTTHHHHC--CTTCCSHHHHHHHHHHHHHHSSS-CCTTSEEEEEEETTTTEEEECCTTTTGGGTT
T ss_pred EecCeEEECCCHHHHHHHHHHhc--cCCCCHHHHHHHHHHHHHHHHhc-cCCCeEEEEEEEeCCCcEEECCHHHHHHHHH
Confidence 99999999999999999999998 68999999999999999999987 5445899999998876799999999999999
Q ss_pred Hhhcc
Q 025897 241 AISER 245 (246)
Q Consensus 241 ~i~~~ 245 (246)
++.+.
T Consensus 239 ~~~~~ 243 (264)
T 3h4p_A 239 KVKKK 243 (264)
T ss_dssp TTTTS
T ss_pred HHHHh
Confidence 88654
No 4
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=100.00 E-value=2.3e-62 Score=413.46 Aligned_cols=231 Identities=36% Similarity=0.607 Sum_probs=221.1
Q ss_pred CCCCcccceeCCCCccchhccHHHHHhccCceEEEEEcCCeEEEEEeccCCcCccccCCceeeEEecCeEEEEEecchHH
Q 025897 7 GGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 86 (246)
Q Consensus 7 ~~yd~~~t~f~p~Gr~~Q~eya~~av~~~G~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D 86 (246)
.+||+++|+|||||||||||||.+++++ |+|+|||+++||||||+|++.+++++.+++.+||++|++|++++++|+.+|
T Consensus 3 ~~yd~~~t~fsp~Grl~QvEya~~av~~-Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD 81 (233)
T 1iru_B 3 RGYSFSLTTFSPSGKLVQIEYALAAVAG-GAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGLVYSGMGPD 81 (233)
T ss_dssp CCCCSBSCCCCTTSCCHHHHHHHHHHHT-SCCEEEEECSSCEEEEEECCCCCSSBCSTTCCSSEESSSSEEEEEEECHHH
T ss_pred CCccCCceeECCCCeEehhHhHHHHHHc-CCcEEEEEeCCEEEEEEEecCCccccccccCCeEEEECCCEEEEEEEccHH
Confidence 4799999999999999999999999995 999999999999999999999988888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCcceeeceEE
Q 025897 87 ARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKAT 166 (246)
Q Consensus 87 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~ 166 (246)
++.|.++++.+++.|+++++++++++.+++++++.+|.|+++++.|||++++||+|||+ +||+||.+||+|++.+++++
T Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rP~~v~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~ 160 (233)
T 1iru_B 82 YRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNE-GRPYLFQSDPSGAYFAWKAT 160 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCSEEEEEEEECS-SSEEEEEECTTSCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCCCCcEEEEEEEEEeC-CCCeEEEECCCCCEEEeeEE
Confidence 99999999999999999999999999999999999999999888999999999999995 79999999999999999999
Q ss_pred eecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEcCCCcEEEcCHHHHHHHHHHhh
Q 025897 167 SAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAIS 243 (246)
Q Consensus 167 a~G~g~~~a~~~Le~~~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~~~iei~ii~~~~~~~~~l~~~eI~~~l~~i~ 243 (246)
|+|+++++++++||+.| +++||++||++++++||..+.++|.+..+++|++|++++ |++++++||++++.+|+
T Consensus 161 aiG~gs~~a~~~Le~~~--~~~ms~eea~~la~~al~~~~~~d~sg~~i~v~vi~~~g--~~~l~~~ei~~~~~~~~ 233 (233)
T 1iru_B 161 AMGKNYVNGKTFLEKRY--NEDLELEDAIHTAILTLKESFEGQMTEDNIEVGICNEAG--FRRLTPTEVKDYLAAIA 233 (233)
T ss_dssp EESTTHHHHHHHHHHHC--CTTCCHHHHHHHHHHHHHTTCCSCCCSSSEEEEEEETTE--EEECCHHHHHHHHTTCC
T ss_pred EECCCCHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEEECCC--EEECCHHHHHHHHHhcC
Confidence 99999999999999998 578999999999999999999999654589999999987 99999999999998763
No 5
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=100.00 E-value=4.6e-62 Score=418.00 Aligned_cols=236 Identities=29% Similarity=0.521 Sum_probs=221.9
Q ss_pred CCCCcccceeCCCCccchhccHHHHHhccCceEEEEEcCCeEEEEEeccCCcCccccC-CceeeEEecCeEEEEEecchH
Q 025897 7 GGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHT-SVTHLFPITKYLGLLATGMTA 85 (246)
Q Consensus 7 ~~yd~~~t~f~p~Gr~~Q~eya~~av~~~G~t~vgi~~~dgvvla~d~~~~~~l~~~~-~~~Ki~~i~~~i~~~~sG~~~ 85 (246)
.+||+++|+|||||||||||||.+|++ +|+|+|||+++||||||+|++.+.+++..+ +.+||++|++|++|+++|+.+
T Consensus 3 ~~yd~~~t~fsp~Grl~QvEYA~~av~-~Gtt~vgi~~~dgVVlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~a 81 (261)
T 1iru_C 3 RRYDSRTTIFSPEGRLYQVEYAMEAIG-HAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITS 81 (261)
T ss_dssp TTTCCCTTCCCTTSCCHHHHHHHHHHT-TSCCEEEEBCSSEEEEEECCCCCCTTBCCCSSCSSEEECSSSEEEEEEECHH
T ss_pred CccCCCCccCCCCCeehHHHhHHHHHh-cCCcEEEEEeCCEEEEEEecccCCcccccCCCCccEEEecCCEEEEEeEcHH
Confidence 379999999999999999999999999 499999999999999999999996555544 589999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCcceeeceE
Q 025897 86 DARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKA 165 (246)
Q Consensus 86 D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~ 165 (246)
|++.|.++++.+++.|+++++++++++.+++.+++.++.|+|+.+.|||++++||+|||+++||+||.+||+|++.++++
T Consensus 82 D~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~ 161 (261)
T 1iru_C 82 DANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKA 161 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEETTTEEEEEEEETTTEEEECSE
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcCcceEEEEEEEEeCCCCcEEEEECCCceEEeeee
Confidence 99999999999999999999999999999999999999999988899999999999999657899999999999999999
Q ss_pred EeecCChHHHHHHHHhhccCCC-CCCHHHHHHHHHHHHHHhhhccCCCC-cEEEEEEEcCCCc--EEEcCHHHHHHHHHH
Q 025897 166 TSAGLKEQEAINFLEKKMKNDP-AFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPE--FRVLSIEEIDEHLTA 241 (246)
Q Consensus 166 ~a~G~g~~~a~~~Le~~~~~~~-~~s~~ea~~l~~~~l~~~~~~d~~~~-~iei~ii~~~~~~--~~~l~~~eI~~~l~~ 241 (246)
+|+|+|+++++++||+.| ++ +||++||++++++||..+.++|..++ +++|++|+++++. |++++++||++++.+
T Consensus 162 ~aiGsgs~~a~~~Le~~~--~~~~ms~eeA~~la~~al~~~~~~d~~sg~~i~v~vi~~~~~~~~~~~l~~~ei~~~l~~ 239 (261)
T 1iru_C 162 TCIGNNSAAAVSMLKQDY--KEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLIKK 239 (261)
T ss_dssp EEESTTTTHHHHHHHHHC--CTTCCCHHHHHHHHHHHHHHSSSCTTCCSTTCEEEEEECCSSSCEEEECCHHHHHHHHHH
T ss_pred EEeCcccHHHHHHHHHhh--ccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEcCCCeeeEEECCHHHHHHHHHH
Confidence 999999999999999998 57 89999999999999999999987665 7999999998753 899999999999999
Q ss_pred hhcc
Q 025897 242 ISER 245 (246)
Q Consensus 242 i~~~ 245 (246)
+.++
T Consensus 240 ~~~~ 243 (261)
T 1iru_C 240 HEEE 243 (261)
T ss_dssp HHTT
T ss_pred HHhc
Confidence 9765
No 6
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=100.00 E-value=8.6e-62 Score=412.61 Aligned_cols=234 Identities=30% Similarity=0.554 Sum_probs=221.5
Q ss_pred CCCcccceeCCCCccchhccHHHHHhccCceEEEEEcCCeEEEEEeccCCcCccc-cCCceeeEEecCeEEEEEecchHH
Q 025897 8 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLD-HTSVTHLFPITKYLGLLATGMTAD 86 (246)
Q Consensus 8 ~yd~~~t~f~p~Gr~~Q~eya~~av~~~G~t~vgi~~~dgvvla~d~~~~~~l~~-~~~~~Ki~~i~~~i~~~~sG~~~D 86 (246)
+||+++|+|||||||||||||.+|+++ |+|+|||+++||||||+|++.+.+++. +++.+||++|++|++|+++|+.+|
T Consensus 4 ~yd~~~t~fsp~Grl~QvEyA~~av~~-Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD 82 (244)
T 1ryp_C 4 RYDSRTTIFSPEGRLYQVEYALESISH-AGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTAD 82 (244)
T ss_dssp GGCCCTTCBCTTSCBHHHHHHHHHHTT-SCCEEEEEETTEEEEEEECSSCCSSBCSTTCCSSEEESSSSEEEEEEECHHH
T ss_pred ccCCCCceECcCCeeHHHHhHHHHHhc-CCcEEEEEeCCEEEEEEeeccCCcCccCCCCCCcEEEECCCEEEEEEEcHHH
Confidence 799999999999999999999999995 999999999999999999999976766 788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCcceeeceEE
Q 025897 87 ARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKAT 166 (246)
Q Consensus 87 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~ 166 (246)
++.|.++++.+++.|+++++++++++.+++.+++.+|.|+++++.|||++++||+|||+++||+||.+||+|++.+++++
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~ 162 (244)
T 1ryp_C 83 AEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAI 162 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEETTTEEEEEEECTTCCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccceEEEEEEEEEcCCCCCEEEEECCCccEEeeeEE
Confidence 99999999999999999999999999999999999999999989999999999999994479999999999999999999
Q ss_pred eecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhc-cCCCCcEEEEEEE--cCCCc--EEEcCHHHHHHHHHH
Q 025897 167 SAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQE-DFKASEIEVGVVS--KENPE--FRVLSIEEIDEHLTA 241 (246)
Q Consensus 167 a~G~g~~~a~~~Le~~~~~~~~~s~~ea~~l~~~~l~~~~~~-d~~~~~iei~ii~--~~~~~--~~~l~~~eI~~~l~~ 241 (246)
|+|+|+++++++||+.| +++||++||++++++||..+.++ +.+..+++|++|+ ++++. |+.++++||++++.+
T Consensus 163 aiGsgs~~a~~~Le~~~--~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~~~~~~~~~~l~~~ei~~~~~~ 240 (244)
T 1ryp_C 163 SVGANTSAAQTLLQMDY--KDDMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGANDGEVYQKIFKPQEIKDILVK 240 (244)
T ss_dssp EESTTHHHHHHHHHHHC--CTTCCHHHHHHHHHHHHHHHCSSSSCCGGGEEEEEEECCSSSSSCEEEECCHHHHHHHHHH
T ss_pred EECCCcHHHHHHHHHhh--hcCCCHHHHHHHHHHHHHHHhccccCCCCcEEEEEEEeecCCCceeEEECCHHHHHHHHHH
Confidence 99999999999999998 67999999999999999999998 5553479999999 88865 999999999999998
Q ss_pred hhc
Q 025897 242 ISE 244 (246)
Q Consensus 242 i~~ 244 (246)
|..
T Consensus 241 ~~~ 243 (244)
T 1ryp_C 241 TGI 243 (244)
T ss_dssp HTC
T ss_pred hhc
Confidence 763
No 7
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=100.00 E-value=9.4e-62 Score=409.72 Aligned_cols=228 Identities=38% Similarity=0.621 Sum_probs=211.7
Q ss_pred CCCCcccceeCCCCccchhccHHHHHhccCceEEEEEcCCeEEEEEeccCCcCccccCCceeeEEecCeEEEEEecchHH
Q 025897 7 GGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 86 (246)
Q Consensus 7 ~~yd~~~t~f~p~Gr~~Q~eya~~av~~~G~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D 86 (246)
++||+++|+||||||++|||||.+|+++ |+|+|||+++||||||+|++.+.+++.+++.+||++|++|++++++|+.+|
T Consensus 6 ~~yd~~~t~fsp~Grl~QvEya~~av~~-Gtt~vgi~~~dgVvlaaD~r~~~~~~~~~~~~Ki~~i~~~i~~~~aG~~aD 84 (233)
T 1yar_A 6 MAYSRAITVFSPDGRLFQVEYAREAVKK-GSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLIDDYVAAVTSGLVAD 84 (233)
T ss_dssp -------CCCCTTSCCHHHHHHHHHHTT-SCCEEEEEETTEEEEEECCCCCCTTBCSTTCCSEEEEETTEEEEEEEBHHH
T ss_pred ccCCCCCceECcCCeeHHHHhHHHHHhc-CCcEEEEEECCEEEEEEeccCCcccccccccCeEEEecCCEEEEEeeCHHH
Confidence 4799999999999999999999999995 999999999999999999999977888888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCcceeeceEE
Q 025897 87 ARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKAT 166 (246)
Q Consensus 87 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~ 166 (246)
++.|.++++.+++.|+++++++++++.+++.+++.++.|+++.+.|||++++||+|||+ +||+||.+||+|++.+++++
T Consensus 85 ~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~ 163 (233)
T 1yar_A 85 ARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQ-IGPRLFDCDPAGTINEYKAT 163 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECS-SCEEEEEECTTCCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCcCcceEEEEEEEEeC-CCCEEEEECCCCCEEeeeEE
Confidence 99999999999999999999999999999999999999999888999999999999997 79999999999999999999
Q ss_pred eecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEcCCCcEEEcCHHHHHHHH
Q 025897 167 SAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHL 239 (246)
Q Consensus 167 a~G~g~~~a~~~Le~~~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~~~iei~ii~~~~~~~~~l~~~eI~~~l 239 (246)
|+|+|+++++++||+.| +++||++||++++++||..+.++|++..+++|++|+++++ |++++++||+++|
T Consensus 164 aiG~gs~~a~~~Le~~~--~~~~s~eea~~la~~al~~~~~~d~s~~~i~v~vi~~~~~-~~~~~~~ei~~~l 233 (233)
T 1yar_A 164 AIGSGKDAVVSFLEREY--KENLPEKEAVTLGIKALKSSLEEGEELKAPEIASITVGNK-YRIYDQEEVKKFL 233 (233)
T ss_dssp EESTTHHHHHHHHHHHC--CTTCCHHHHHHHHHHHHHHTSCSSCCCCCCEEEEEETTSC-CEECCHHHHHTTC
T ss_pred EEcCCcHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC-EEECCHHHHHhhC
Confidence 99999999999999998 5799999999999999999999998544899999999986 9999999998764
No 8
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=100.00 E-value=2.2e-61 Score=409.35 Aligned_cols=234 Identities=34% Similarity=0.581 Sum_probs=219.1
Q ss_pred CCCcccceeCCCCccchhccHHHHHhccCceEEEEEcCCeEEEEEeccCCcCccccC-CceeeEEecCeEEEEEecchHH
Q 025897 8 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHT-SVTHLFPITKYLGLLATGMTAD 86 (246)
Q Consensus 8 ~yd~~~t~f~p~Gr~~Q~eya~~av~~~G~t~vgi~~~dgvvla~d~~~~~~l~~~~-~~~Ki~~i~~~i~~~~sG~~~D 86 (246)
+||+++|+|||||||||||||.+|+++ |+|+|||+++||||||+|++.+.+++..+ +.+||++|++|++|+++|+.+|
T Consensus 1 ~yd~~~t~fsp~Grl~QvEya~~av~~-Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD 79 (241)
T 1ryp_D 1 GYDRALSIFSPDGHIFQVEYALEAVKR-GTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNAD 79 (241)
T ss_dssp CCCCCCSCCBTTTBCHHHHHHHHHHTT-SCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEETTEEEEEEECHHH
T ss_pred CCCCCceeECCCCcchHHHHHHHHHHc-CCCEEEEEeCCEEEEEEeeccCccCccccCCcCcEEEecCCEEEEEeecHHH
Confidence 599999999999999999999999995 99999999999999999999996666554 8899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCccceeEEEEEcCC-CCcEEEEECCCcceeeceE
Q 025897 87 ARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEE-CGPRLFKCDPAGHFFGHKA 165 (246)
Q Consensus 87 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~-~gp~Ly~id~~G~~~~~~~ 165 (246)
++.|.+.++.+++.|+++++++++++.+++++++.++.|+++++.|||++++||+|||++ +||+||.+||+|++.++++
T Consensus 80 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~ 159 (241)
T 1ryp_D 80 SRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSA 159 (241)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCTTCCSCEEEEECTTSCEEEBSE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHccCCCCCCcceeeEEEEEcCCCCCeeEEEECCCCCEEEeee
Confidence 999999999999999999999999999999999999999998888999999999999975 7899999999999999999
Q ss_pred EeecCChHHHHHHHHhhccC-CCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEcCCCcEEEcCHHHHHHHHHHhhc
Q 025897 166 TSAGLKEQEAINFLEKKMKN-DPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISE 244 (246)
Q Consensus 166 ~a~G~g~~~a~~~Le~~~~~-~~~~s~~ea~~l~~~~l~~~~~~d~~~~~iei~ii~~~~~~~~~l~~~eI~~~l~~i~~ 244 (246)
+|+|+++++++++||+.|.. +++||++||++++++||..+.+ .+..+++|++|+++++ |++++++||++++.++.+
T Consensus 160 ~aiG~gs~~a~~~Le~~~~~~~~~ms~eea~~l~~~al~~~~~--~sg~~i~v~vi~~~~~-~~~l~~~ei~~~~~~~~~ 236 (241)
T 1ryp_D 160 QTIGRNSKTVREFLEKNYDRKEPPATVEECVKLTVRSLLEVVQ--TGAKNIEITVVKPDSD-IVALSSEEINQYVTQIEQ 236 (241)
T ss_dssp EEESTTHHHHHHHHHTTCCTTSCCCSHHHHHHHHHHHHHHHHC--SCSTTEEEEEEETTTE-EEECCHHHHHHHHHHHTH
T ss_pred EEECCCcHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHhc--CCCCcEEEEEEECCCc-EEECCHHHHHHHHHHHhh
Confidence 99999999999999999843 5789999999999999999985 5445899999999875 999999999999999876
Q ss_pred c
Q 025897 245 R 245 (246)
Q Consensus 245 ~ 245 (246)
+
T Consensus 237 ~ 237 (241)
T 1ryp_D 237 E 237 (241)
T ss_dssp H
T ss_pred h
Confidence 4
No 9
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=100.00 E-value=3.1e-61 Score=411.35 Aligned_cols=235 Identities=33% Similarity=0.479 Sum_probs=219.7
Q ss_pred CCCCCcccceeCCCCccchhccHHHHHhccCceEEEEEcCCeEEEEEeccCCcCccccCCceeeEEecCeEEEEEecchH
Q 025897 6 GGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTA 85 (246)
Q Consensus 6 ~~~yd~~~t~f~p~Gr~~Q~eya~~av~~~G~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~ 85 (246)
+++||+++|+|||||||||||||.+|+++ |+|+|||+++||||||+|++.+.+++..++.+||++|++|++|+++|+.+
T Consensus 4 ~~~yd~~~t~fsp~Grl~QvEyA~~av~~-Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~KI~~i~~~i~~~~aG~~a 82 (254)
T 1iru_G 4 GTGYDLSASTFSPDGRVFQVEYAMKAVEN-SSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLA 82 (254)
T ss_dssp CSSTTSCTTCCCTTSCCHHHHHHHHHHHT-SCCEEEEECSSBEEEEEEEECSCTTBCTTTTCCEEEEETTEEEEEEECHH
T ss_pred ccccCCCCccCCcCCccHHHHhHHHHHhc-CCCEEEEEECCEEEEEEecccCCCCcCcCcCCcEEEECCCEEEEEecChH
Confidence 45799999999999999999999999995 99999999999999999999997666677889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCcceeeceE
Q 025897 86 DARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKA 165 (246)
Q Consensus 86 D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~ 165 (246)
|++.|.+.++.+++.|+++++++++++.+++.+++.++.|+|+++.|||++++||+|||+++||+||.+||+|++.++++
T Consensus 83 D~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~ 162 (254)
T 1iru_G 83 DARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWG 162 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEETTTEEEEEEECTTCCEEEBSE
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccccccccceEEEEEEEEeCCCCcEEEEEcCCCCEEeeee
Confidence 99999999999999999999999999999999999999999988899999999999999557999999999999999999
Q ss_pred EeecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCCC-cEEEEEEEcCCC-cEEEcCHHHHHHHHHHhh
Q 025897 166 TSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENP-EFRVLSIEEIDEHLTAIS 243 (246)
Q Consensus 166 ~a~G~g~~~a~~~Le~~~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~~-~iei~ii~~~~~-~~~~l~~~eI~~~l~~i~ 243 (246)
+|+|+++++++++||+.| +++||++||++++++||+.+.+++...+ +++|++|+++.. .|+++++++|++++..+.
T Consensus 163 ~aiGsgs~~a~~~Le~~~--~~~ms~eea~~la~~al~~~~~~~~~~~~~iev~vi~~~~~g~~~~l~~~~i~~~~~~~~ 240 (254)
T 1iru_G 163 CAIGKARQAAKTEIEKLQ--MKEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGRHEIVPKDIREEAEKYAK 240 (254)
T ss_dssp EEESTTHHHHHHHHTTSC--GGGCCHHHHHHHHHHHHHHHSCSSSSCCEEEEEEECBTTTTTCCEECCHHHHHHHHHHHH
T ss_pred EEecCccHHHHHHHHHhc--cCCCCHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEEcCCCCCeEECCHHHHHHHHHHHH
Confidence 999999999999999997 5789999999999999999988776455 799999998722 499999999999998753
No 10
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=100.00 E-value=7.3e-61 Score=407.34 Aligned_cols=231 Identities=35% Similarity=0.598 Sum_probs=219.0
Q ss_pred CCCCcccceeCCCCccchhccHHHHHhccCceEEEEEcCCeEEEEEeccCCcCccccCCceeeEEecCeEEEEEecchHH
Q 025897 7 GGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 86 (246)
Q Consensus 7 ~~yd~~~t~f~p~Gr~~Q~eya~~av~~~G~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D 86 (246)
++||+++|+|||||||+|||||.+++++ |+|+|||+++||||||+|++.+.+++.+++.+||++|+++++++++|+.+|
T Consensus 6 ~~yd~~~t~fsp~Grl~QvEya~~av~~-Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~KI~~i~~~i~~~~aG~~aD 84 (246)
T 1j2p_A 6 MGYDRAITVFSPDGRLFQVEYAREAVKR-GATAIGIKCKEGVILIADKRVGSKLLEKDTIEKIYKIDEHICAATSGLVAD 84 (246)
T ss_dssp TTSSSCTTCCCTTSCCHHHHHHHHHHHT-SCCEEEEEETTEEEEEEECCCSCTTBCGGGCCSEEECSSSEEEEEEECHHH
T ss_pred cCcCCCCceECCCCeehHHHhHHHHHHc-CCcEEEEEECCEEEEEEeccCCccccccCccCcEEEECCCEEEEEeEccHH
Confidence 4899999999999999999999999995 999999999999999999999987887888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCcceeeceEE
Q 025897 87 ARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKAT 166 (246)
Q Consensus 87 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~ 166 (246)
++.|.+.++.+++.|+++++++++++.+++.+++.+|.|+++.+.|||++++||+||| +||+||.+||+|++.+++++
T Consensus 85 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D--~gp~Ly~idp~G~~~~~~~~ 162 (246)
T 1j2p_A 85 ARVLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVN--EVPKLYETDPSGALLEYKAT 162 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEES--SSEEEEEECTTCCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCcccccEEEEEEEEC--CCCEEEEECCCceEEeeeEE
Confidence 9999999999999999999999999999999999999999988899999999999999 68999999999999999999
Q ss_pred eecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCCC-cEEEEEEE-cCCCcEEEcCHHHHHHHHHHhhc
Q 025897 167 SAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVS-KENPEFRVLSIEEIDEHLTAISE 244 (246)
Q Consensus 167 a~G~g~~~a~~~Le~~~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~~-~iei~ii~-~~~~~~~~l~~~eI~~~l~~i~~ 244 (246)
|+|+|+++++++||+.| +++||++||++++++||..+.++ ..++ +++|++|+ ++++ |++++++||++++.++.+
T Consensus 163 aiGsgs~~a~~~Le~~~--~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~~-~~~l~~~ei~~~~~~~~~ 238 (246)
T 1j2p_A 163 AIGMGRMAVTEFFEKEY--RDDLSFDDAMVLGLVAMGLSIES-ELVPENIEVGYVKVDDRT-FKEVSPEELKPYVERANE 238 (246)
T ss_dssp EESTTHHHHHHHHHHHC--CTTCCHHHHHHHHHHHHHHHHTS-CCCGGGEEEEEEETTTCC-CEECCHHHHHHHHHHHHH
T ss_pred EECCCcHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHHHhhc-cCCCCcEEEEEEEcCCCc-eEECCHHHHHHHHHHHHH
Confidence 99999999999999998 57999999999999999999987 4445 79999999 6554 999999999999998865
No 11
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=100.00 E-value=2.6e-61 Score=410.51 Aligned_cols=232 Identities=35% Similarity=0.582 Sum_probs=219.8
Q ss_pred CCcccceeCCCCccchhccHHHHHhccCceEEEEEcCCeEEEEEeccCCcCccccCCceeeEEecCeEEEEEecchHHHH
Q 025897 9 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADAR 88 (246)
Q Consensus 9 yd~~~t~f~p~Gr~~Q~eya~~av~~~G~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~ 88 (246)
||+++|+|||||||||||||.+|+++ |+|+|||+++||||||+|++.+.+++..++.+||++|++|++++++|+.+|++
T Consensus 3 yd~~~t~fsp~Grl~QvEYA~~av~~-Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~ 81 (248)
T 1iru_D 3 YDRAITVFSPDGHLFQVEYAQEAVKK-GSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADAR 81 (248)
T ss_dssp CCCCCSCCCTTSCCHHHHHHHHHHHT-SCCEEEECCSSEEEEEECCCCCCSSSCGGGGCSEEESSSSCEEEEEECHHHHH
T ss_pred ccCCCceECCCCcchHHHHHHHHHHc-CCCEEEEEeCCEEEEEEeecccccCccCCCCCcEEEEcCCEEEEEeecHHHHH
Confidence 99999999999999999999999995 99999999999999999999997788788899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCcceeeceEEee
Q 025897 89 TLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSA 168 (246)
Q Consensus 89 ~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~a~ 168 (246)
.|.+.++.+++.|+++++++++++.+++.+++.+|.|+|+++.|||++++||+|||+++||+||.+||+|++.+++++|+
T Consensus 82 ~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~ai 161 (248)
T 1iru_D 82 IVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAI 161 (248)
T ss_dssp HHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECSSSCEEEEEECTTSCEEEBSEEEE
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCcccccEEEEEEEEeCCCCcEEEEEcCCCcEEEeeEEEE
Confidence 99999999999999999999999999999999999999988899999999999999557999999999999999999999
Q ss_pred cCChHHHHHHHHhhccCCCCC--CHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEcCCCcEEEcCHHHHHHHHHHhhccC
Q 025897 169 GLKEQEAINFLEKKMKNDPAF--TFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISERD 246 (246)
Q Consensus 169 G~g~~~a~~~Le~~~~~~~~~--s~~ea~~l~~~~l~~~~~~d~~~~~iei~ii~~~~~~~~~l~~~eI~~~l~~i~~~~ 246 (246)
|+++++++++||+.| +++| |++||++++++||..+.+ .+..+++|++|+++++ |++++++||++++..+.+++
T Consensus 162 G~gs~~a~~~Le~~~--~~~m~~s~eea~~la~~al~~~~~--~sg~~i~v~vi~~~g~-~~~l~~~ei~~~~~~~~~~~ 236 (248)
T 1iru_D 162 GRGAKSVREFLEKNY--TDEAIETDDLTIKLVIKALLEVVQ--SGGKNIELAVMRRDQS-LKILNPEEIEKYVAEIEKEK 236 (248)
T ss_dssp STTHHHHHHHHTTTC--CSSTTCSHHHHHHHHHHHHHTTSC--TTSTTCCEEEEESSSC-EECCCHHHHHHHTTTTTTTT
T ss_pred CCCcHHHHHHHHHhh--cccccCCHHHHHHHHHHHHHHHHc--CCCCcEEEEEEECCCc-EEECCHHHHHHHHHHHHhcc
Confidence 999999999999998 5789 999999999999999885 3444899999999985 99999999999999987653
No 12
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=100.00 E-value=9.7e-61 Score=407.48 Aligned_cols=233 Identities=33% Similarity=0.557 Sum_probs=219.8
Q ss_pred CCCCcccceeCCCCccchhccHHHHHhccCceEEEEEcCCeEEEEEeccCCcCccccCCceeeEEecCeEEEEEecchHH
Q 025897 7 GGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 86 (246)
Q Consensus 7 ~~yd~~~t~f~p~Gr~~Q~eya~~av~~~G~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D 86 (246)
.+||+++|+|||||||||||||.+|+++ |+|+|||+++||||||+|++.+++++.+++.+||++|+++++|+++|+.+|
T Consensus 3 ~~yd~~~t~fsp~Grl~QvEyA~~av~~-Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD 81 (250)
T 1ryp_B 3 DRYSFSLTTFSPSGKLGQIDYALTAVKQ-GVTSLGIKATNGVVIATEKKSSSPLAMSETLSKVSLLTPDIGAVYSGMGPD 81 (250)
T ss_dssp CCCCSBSSCBCTTSCBHHHHHHHHHHHT-SCCEEEEEETTEEEEEEECCCSCSSBCGGGCCSSEEEETTEEEEEEECHHH
T ss_pred CcccCCceeECCCCccHHHHhHHHHHHc-CCcEEEEEECCEEEEEEeccCCCccccCcccCceEEECCCEEEEeeeCHHH
Confidence 3799999999999999999999999995 999999999999999999999988888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-HHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCcceeeceE
Q 025897 87 ARTLVQQARYEAAE-FRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKA 165 (246)
Q Consensus 87 ~~~l~~~~~~~~~~-~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~ 165 (246)
++.|.++++.+++. |+..++++++++.+++.+++.++.++++.+.|||++++||+|||+++||+||.+||+|++.++++
T Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~ 161 (250)
T 1ryp_B 82 YRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKA 161 (250)
T ss_dssp HHHHHHHHHHHHHHTTHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCCEEEEEEEEETTTEEEEEEECTTSCEEEBSE
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcccceEEEEEEEEcCCCCcEEEEECCCCCEEeece
Confidence 99999999999999 99999999999999999999999999988889999999999999767899999999999999999
Q ss_pred EeecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEcCC--------------CcEEEcC
Q 025897 166 TSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKEN--------------PEFRVLS 231 (246)
Q Consensus 166 ~a~G~g~~~a~~~Le~~~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~~~iei~ii~~~~--------------~~~~~l~ 231 (246)
+|+|+++++++++||+.| +++||++||++++++||..+.+++.+..+++|++|++++ ..|++++
T Consensus 162 ~aiGsgs~~a~~~Le~~~--~~~ms~eea~~la~~al~~~~~~~~sg~~i~v~vi~~~~~~~~~~~~~~~~~~~~~~~l~ 239 (250)
T 1ryp_B 162 TAIGKGSVAAKTFLEKRW--NDELELEDAIHIALLTLKESVEGEFNGDTIELAIIGDENPDLLGYTGIPTDKGPRFRKLT 239 (250)
T ss_dssp EEESTTHHHHHHHHHHHC--CTTCCHHHHHHHHHHHHHHHCCSCCSTTTEEEEEECSCCGGGTSEESCSSCCCCSEEECC
T ss_pred eEecCccHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHHHhccccCCCCEEEEEEEccccccccccccccCCCCCeEECC
Confidence 999999999999999998 689999999999999999999887654589999999862 3499999
Q ss_pred HHHHHHHHHHh
Q 025897 232 IEEIDEHLTAI 242 (246)
Q Consensus 232 ~~eI~~~l~~i 242 (246)
++||++++.++
T Consensus 240 ~~ei~~~l~~~ 250 (250)
T 1ryp_B 240 SQEINDRLEAL 250 (250)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHHhC
Confidence 99999999764
No 13
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=100.00 E-value=4.4e-61 Score=407.53 Aligned_cols=231 Identities=32% Similarity=0.607 Sum_probs=216.9
Q ss_pred CCCCcccceeCCCCccchhccHHHHHhccCceEEEEEcCCeEEEEEeccCCcCccccCCceeeEEecCeEEEEEecchHH
Q 025897 7 GGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 86 (246)
Q Consensus 7 ~~yd~~~t~f~p~Gr~~Q~eya~~av~~~G~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D 86 (246)
++||+++|+|||||||+|||||.+|+++ |+|+|||+++||||||+|++.+.+++.+++.+||++|+++++++++|+.+|
T Consensus 6 ~~yd~~~t~fsp~Grl~QvEya~~av~~-Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~Ki~~i~~~i~~~~aG~~aD 84 (241)
T 1iru_E 6 SEYDRGVNTFSPEGRLFQVEYDIEAIKL-GSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLIAD 84 (241)
T ss_dssp --CCCCTTCBCTTSCBHHHHHHHHHHTT-SCCEEEEEETTEEEEEEECCCCCTTBCTTSCCSEEEEETTEEEEEEECHHH
T ss_pred CCCCCCCceECCCCccHHHHHHHHHHHc-CCcEEEEEcCCEEEEEEecccCCcCcCccccceEEEEcCCEEEEEeeChHH
Confidence 4799999999999999999999999995 999999999999999999999966666888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccC-----CCCccceeEEEEEcCCCCcEEEEECCCccee
Q 025897 87 ARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAY-----MRPLGVVAMVLSIDEECGPRLFKCDPAGHFF 161 (246)
Q Consensus 87 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~-----~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~ 161 (246)
++.|.+.++.+++.|+++++++++++.+++.+++.+|.|+++.+ .|||++++||+|||+ +||+||.+||+|++.
T Consensus 85 ~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~y~~~~~~~~l~~rp~~v~~lvaG~D~-~gp~Ly~idp~G~~~ 163 (241)
T 1iru_E 85 AKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDE-KGPQLFHMDPSGTFV 163 (241)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEET-TEEEEEEECTTSCEE
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccccccccccccceEEEEEEEEeC-CCCEEEEECCCCcEE
Confidence 99999999999999999999999999999999999999998877 899999999999994 799999999999999
Q ss_pred eceEEeecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEcCCCcEEEcCHHHHHHHHHH
Q 025897 162 GHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTA 241 (246)
Q Consensus 162 ~~~~~a~G~g~~~a~~~Le~~~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~~~iei~ii~~~~~~~~~l~~~eI~~~l~~ 241 (246)
+++++|+|+|+++++++||+.| +++||++||++++++||..+.+++.+..+++|++|+++++ |++++++||++++.+
T Consensus 164 ~~~~~aiGsgs~~a~~~Le~~~--~~~ms~eea~~la~~al~~~~~~~~sg~~i~v~vi~~~~~-~~~l~~~ei~~~~~~ 240 (241)
T 1iru_E 164 QCDARAIGSASEGAQSSLQELY--HKSMTLKEAIKSSLIILKQVMEEKLNATNIELATVQPGQN-FHMFTKEELEEVIKD 240 (241)
T ss_dssp EBSEEEESTTHHHHHHHHHHHC--CTTCCHHHHHHHHHHHHHHHCSSCCCTTSEEEEEECSSSC-CEECCHHHHHHHHTT
T ss_pred ecceEEECCCcHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEEECCCC-eEECCHHHHHHHHHh
Confidence 9999999999999999999998 6789999999999999999998844444899999999987 999999999999976
Q ss_pred h
Q 025897 242 I 242 (246)
Q Consensus 242 i 242 (246)
|
T Consensus 241 ~ 241 (241)
T 1iru_E 241 I 241 (241)
T ss_dssp C
T ss_pred C
Confidence 4
No 14
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=100.00 E-value=5.4e-61 Score=407.26 Aligned_cols=232 Identities=29% Similarity=0.541 Sum_probs=219.2
Q ss_pred CcccceeCCCCccchhccHHHHHhccCceEEEEEcCCeEEEEEeccCCcCccccCCceeeEEecCeEEEEEecchHHHHH
Q 025897 10 DRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADART 89 (246)
Q Consensus 10 d~~~t~f~p~Gr~~Q~eya~~av~~~G~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~ 89 (246)
|+++|+|||||||||||||.+|+++ |+|+|||+++||||||+|++.+.+++.+++.+||++|++|++|+++|+.+|++.
T Consensus 1 d~~~t~fsp~Grl~QvEyA~~av~~-Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~ 79 (242)
T 1ryp_E 1 DRGVSTFSPEGRLFQVEYSLEAIKL-GSTAIGIATKEGVVLGVEKRATSPLLESDSIEKIVEIDRHIGCAMSGLTADARS 79 (242)
T ss_dssp CCCTTCBCTTSCBHHHHHHHHHHTT-SCCEEEEECSSCEEEEEECCCSSTTBCGGGCCCEEEEETTEEEEEEESGGGHHH
T ss_pred CCCCceECCCCcChHHHhHHHHHHc-CCCEEEEEECCEEEEEEeecCCCcCccCccCCceEEEcCCEEEEEeecHHHHHH
Confidence 7899999999999999999999995 999999999999999999999976766788899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccC------CCCccceeEEEEEcCCCCcEEEEECCCcceeec
Q 025897 90 LVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAY------MRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGH 163 (246)
Q Consensus 90 l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~------~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~ 163 (246)
|.++++.+++.|+++++++++++.+++.+++.++.|+|+.+ .|||++++||+|||+++||+||.+||+|++.++
T Consensus 80 l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~~~~l~~RP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~ 159 (242)
T 1ryp_E 80 MIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRY 159 (242)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEETTTEEEEEEECTTSCEEEB
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccccccCcceEEEEEEEEeCCCCCEEEEECCCCCEecc
Confidence 99999999999999999999999999999999999998877 899999999999995578999999999999999
Q ss_pred eEEeecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEcCCCcEEEcCHHHHHHHHHHhh
Q 025897 164 KATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAIS 243 (246)
Q Consensus 164 ~~~a~G~g~~~a~~~Le~~~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~~~iei~ii~~~~~~~~~l~~~eI~~~l~~i~ 243 (246)
+++|+|+|+++++++||+.| +++||++||++++++||..+.+++.+..+++|++|++++. |++++++||++++.++.
T Consensus 160 ~~~aiGsgs~~a~~~Le~~~--~~~ms~eea~~la~~al~~~~~~~~sg~~i~v~vi~~~~~-~~~~~~~ei~~~~~~~~ 236 (242)
T 1ryp_E 160 NAKAIGSGSEGAQAELLNEW--HSSLTLKEAELLVLKILKQVMEEKLDENNAQLSCITKQDG-FKIYDNEKTAELIKELK 236 (242)
T ss_dssp SEEEESTTHHHHHHHHHHHC--CTTCCHHHHHHHHHHHHHHHCSSCCCTTSEEEEEEETTTE-EEECCHHHHHHHHHHHH
T ss_pred CEEEECCCCHHHHHHHHHhh--ccCCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC-eEECCHHHHHHHHHHHh
Confidence 99999999999999999998 6889999999999999999998855444899999999987 99999999999999987
Q ss_pred cc
Q 025897 244 ER 245 (246)
Q Consensus 244 ~~ 245 (246)
++
T Consensus 237 ~~ 238 (242)
T 1ryp_E 237 EK 238 (242)
T ss_dssp HH
T ss_pred hh
Confidence 65
No 15
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=100.00 E-value=1.3e-60 Score=409.35 Aligned_cols=233 Identities=29% Similarity=0.557 Sum_probs=218.6
Q ss_pred CCCCcccceeCCCCccchhccHHHHHhccCceEEEEEcCCeEEEEEeccCCcCccccCCceeeEEecCeEEEEEecchHH
Q 025897 7 GGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 86 (246)
Q Consensus 7 ~~yd~~~t~f~p~Gr~~Q~eya~~av~~~G~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D 86 (246)
.+||+++|+|||||||||||||.+++++ |+|+|||+++||||||+|++.+.++. ++.+||++|++|++|+++|+.+|
T Consensus 4 ~~yd~~~t~fsP~Grl~QvEYA~~av~~-Gtt~vgi~~~dgVVlaaD~r~~~gl~--~~~~KI~~i~~~i~~~~aG~~aD 80 (263)
T 1iru_F 4 NQYDNDVTVWSPQGRIHQIEYAMEAVKQ-GSATVGLKSKTHAVLVALKRAQSELA--AHQKKILHVDNHIGISIAGLTAD 80 (263)
T ss_dssp CTTTSCTTCCCTTSCCHHHHHHHHHHHH-SCCEEEEECSSEEEEEEECCCSSTTB--CCCCCEEEEETTEEEEEEECHHH
T ss_pred CCCCCCCccCCCCCeehHHHHHHHHHHc-CCcEEEEEeCCEEEEEEecccccccc--cchhcEEEEcCCEEEEEeCCHHH
Confidence 4699999999999999999999999995 99999999999999999999997664 46799999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCcceeeceEE
Q 025897 87 ARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKAT 166 (246)
Q Consensus 87 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~ 166 (246)
++.|.+.++.+++.|+++++++++++.+++.+++.++.|+|+++.|||++++||+|||+ +||+||.+||+|++.+++++
T Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~t~~~~~RP~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~ 159 (263)
T 1iru_F 81 ARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDD-MGPHIFQTCPSANYFDCRAM 159 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEET-TEEEEEEECSSSCEEEESEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhcccccccceEEEEEEEEcC-CCCEEEEECCCCCEEEeeEE
Confidence 99999999999999999999999999999999999999999888999999999999997 78999999999999999999
Q ss_pred eecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhcc--CCCCcEEEEEEEcCCCcEEEcCHHHHHHHHHHhhc
Q 025897 167 SAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQED--FKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISE 244 (246)
Q Consensus 167 a~G~g~~~a~~~Le~~~~~~~~~s~~ea~~l~~~~l~~~~~~d--~~~~~iei~ii~~~~~~~~~l~~~eI~~~l~~i~~ 244 (246)
|+|+++++++++||+.|++.++||++||++++++||..+.++| .+..+++|++|+++++ |++++++||++++.++.+
T Consensus 160 aiGsgs~~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~rd~~~sg~~iev~vi~~~~~-~~~l~~~ei~~~~~~~~~ 238 (263)
T 1iru_F 160 SIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLE-FTIYDDDDVSPFLEGLEE 238 (263)
T ss_dssp EESTTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCTTCCCCTTTEEEEEEETTEE-EEEECSGGGHHHHTTCCC
T ss_pred EcCcccHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHhccccCCCCcEEEEEEECCCC-eEECCHHHHHHHHHHHhc
Confidence 9999999999999999953248999999999999999999998 3444899999999864 999999999999998864
No 16
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=100.00 E-value=3.8e-60 Score=409.99 Aligned_cols=231 Identities=30% Similarity=0.487 Sum_probs=213.8
Q ss_pred CCCCCcccceeCCCCccchhccHHHHHhccCceEEEEEcCCeEEEEEeccCCcCccccCCceeeEEecCeEEEEEecchH
Q 025897 6 GGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTA 85 (246)
Q Consensus 6 ~~~yd~~~t~f~p~Gr~~Q~eya~~av~~~G~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~ 85 (246)
+++||+++|+|||+||+||||||.+|+++ |+|+|||+++||||||+|++.+.+++..+..+||++|++|++|+++|+.+
T Consensus 5 ~~~yd~~~t~fSP~Grl~QvEYA~kAv~~-GtT~Vgik~kdGVVlAaD~r~t~gl~~~~~~~KI~~I~d~i~~~~aG~~a 83 (288)
T 3nzj_F 5 GTGYDLSNSVFSPDGRNFQVEYAVKAVEN-GTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGCVYSGLIP 83 (288)
T ss_dssp CCCTTSSTTCCCTTSCCHHHHHHHHHHHT-SCCEEEEEETTEEEEEEEEEECCTTBCTTCSCCCEEETTTEEEEEEECHH
T ss_pred cCCccCCcccCCCCCchHHHHHHHHHHhc-CCcEEEEEECCEEEEEEcCCcccCCccccccceEEEEcCCEEEEecCcHH
Confidence 56899999999999999999999999994 99999999999999999999997777667789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCcceeeceE
Q 025897 86 DARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKA 165 (246)
Q Consensus 86 D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~ 165 (246)
|++.|.++++.+++.|+++++++++++.+++++++.+|.|+++++.|||+|++||+|||+ +||+||.+||+|++.++++
T Consensus 84 D~~~l~~~lr~e~~~y~~~~~~~i~v~~lA~~l~~~l~~yt~~~~~rP~gv~~lvaG~D~-~Gp~Ly~iDp~G~~~~~~~ 162 (288)
T 3nzj_F 84 DGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDK-NGAHLYMLEPSGSYWGYKG 162 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEET-TEEEEEEECTTSCEEEBSE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEEEEeC-CCCEEEEECCCCCEEEcCE
Confidence 999999999999999999999999999999999999999999989999999999999998 7899999999999999999
Q ss_pred EeecCChHHHHHHHHhhcc-CCCCCCHHHHHHHHHHHHHHhhhccCCCC-cEEEEEEEc--CCCcEEEcCHHHHHHH
Q 025897 166 TSAGLKEQEAINFLEKKMK-NDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSK--ENPEFRVLSIEEIDEH 238 (246)
Q Consensus 166 ~a~G~g~~~a~~~Le~~~~-~~~~~s~~ea~~l~~~~l~~~~~~d~~~~-~iei~ii~~--~~~~~~~l~~~eI~~~ 238 (246)
+|+|++++.++++||+.++ ++++||++||++++++||..+++++..++ ++||++|++ +++.++.++.+++++.
T Consensus 163 ~aiGsgs~~a~~~Lek~~~~~~~~ms~eEAv~la~~al~~a~~~~~~~~~~iev~vIt~~~~~~~~~~vp~~~~~~~ 239 (288)
T 3nzj_F 163 AATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKGDLLQEA 239 (288)
T ss_dssp EEESTTHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHGGGGTTSEEEEEEEEEETTTSTTCCEECCHHHHHHH
T ss_pred EEEcCcHHHHHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEEecCCCceEEECCHHHHHHH
Confidence 9999999999999999922 37899999999999999999999886655 799999999 3445667777766644
No 17
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=100.00 E-value=1.7e-59 Score=398.35 Aligned_cols=231 Identities=29% Similarity=0.468 Sum_probs=213.4
Q ss_pred CCCCcccceeCCCCccchhccHHHHHhccCceEEEEEcCCeEEEEEeccCCcCccccCCceeeEEecCeEEEEEecchHH
Q 025897 7 GGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 86 (246)
Q Consensus 7 ~~yd~~~t~f~p~Gr~~Q~eya~~av~~~G~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D 86 (246)
.+||+++|+||||||+||||||.+|+++ |+|+|||+++||||||+|++.+.+++..+..+||++|++|++|+++|+.+|
T Consensus 2 ~~yd~~~t~fsp~Grl~QvEya~~av~~-Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~KI~~i~~~i~~~~aG~~aD 80 (244)
T 1ryp_G 2 TGYDLSNSVFSPDGRNFQVEYAVKAVEN-GTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGCVYSGLIPD 80 (244)
T ss_dssp CCTTSSTTCCCTTSCCHHHHHHHHHHHT-SCCEEEEEETTEEEEEEEEECCCTTBCTTTSCCCEEETTTEEEEEEECHHH
T ss_pred CCccCCcccCCcCCchHHHHhHHHHHHC-CCCEEEEEECCEEEEEEecccCCCCccccccCceEEecCCEEEEEcccHHH
Confidence 4799999999999999999999999995 999999999999999999999976666666699999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCcceeeceEE
Q 025897 87 ARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKAT 166 (246)
Q Consensus 87 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~ 166 (246)
++.|.++++.+++.|+++++++++++.+++.+++.+|.|+++++.|||++++||+|||+ +||+||.+||+|++.+++++
T Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~ 159 (244)
T 1ryp_G 81 GRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDK-NGAHLYMLEPSGSYWGYKGA 159 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEET-TEEEEEEECTTSCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccCceEEEEEEEEeC-CcCEEEEECCCCCEEEeeEE
Confidence 99999999999999999999999999999999999999999888899999999999996 79999999999999999999
Q ss_pred eecCChHHHHHHHHhh---ccCCCCCCHHHHHHHHHHHHHHhhhccCCCC-cEEEEEEEc---CCCcEEEcCHHHHHHHH
Q 025897 167 SAGLKEQEAINFLEKK---MKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSK---ENPEFRVLSIEEIDEHL 239 (246)
Q Consensus 167 a~G~g~~~a~~~Le~~---~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~~-~iei~ii~~---~~~~~~~l~~~eI~~~l 239 (246)
|+|+++++++++||+. | +++||++||++++++||..+.++|..++ +++|++|++ +| ++++.++++-+..
T Consensus 160 aiG~gs~~a~~~Le~~~~~~--~~~ms~eea~~la~~al~~~~~~d~~s~~~iev~vi~~~~~~g--~~~~~~~~~~~~~ 235 (244)
T 1ryp_G 160 ATGKGRQSAKAELEKLVDHH--PEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNG--LHKFVKGDLLQEA 235 (244)
T ss_dssp EESTTHHHHHHHHHHHHHHC--TTCCCHHHHHHHHHHHHHHHGGGGTTSCEEEEEEEEETTTTTT--SEEECCTHHHHHH
T ss_pred EECCChHHHHHHHHHhHhhc--CCCCCHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEEecCCCC--eeeeChHHHHHHH
Confidence 9999999999999997 7 6789999999999999999999998766 799999998 44 6677777766555
Q ss_pred HHhh
Q 025897 240 TAIS 243 (246)
Q Consensus 240 ~~i~ 243 (246)
++.+
T Consensus 236 ~~~~ 239 (244)
T 1ryp_G 236 IDFA 239 (244)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 18
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=100.00 E-value=2.2e-60 Score=401.41 Aligned_cols=226 Identities=27% Similarity=0.471 Sum_probs=211.3
Q ss_pred CCCcccceeCCCCccchhccHHHHHhccCceEEEEEcCCeEEEEEeccCCcCccccCCceeeEEecCeEEEEEecchHHH
Q 025897 8 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADA 87 (246)
Q Consensus 8 ~yd~~~t~f~p~Gr~~Q~eya~~av~~~G~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~ 87 (246)
+||+++|+|||||||+|||||.+++++ |+|+|||+++||||||+|++.+.++. ++.+||++|++|++++++|+.+|+
T Consensus 4 ~yd~~~t~fsp~Grl~QvEyA~~av~~-Gtt~vgi~~~dgVvlaaD~r~~~~l~--~~~~Ki~~i~~~i~~~~aG~~aD~ 80 (233)
T 1ryp_F 4 NYDGDTVTFSPTGRLFQVEYALEAIKQ-GSVTVGLRSNTHAVLVALKRNADELS--SYQKKIIKCDEHMGLSLAGLAPDA 80 (233)
T ss_dssp HHSSCTTCCCTTSCCHHHHHHHHHHHT-SCCEEEEECSSEEEEEEECCCSSTTB--CCCCCEEEEETTEEEEEEECHHHH
T ss_pred cccCCCccCCCCCeehHHHHHHHHHHc-CCCEEEEEcCCEEEEEEEeccccccc--cccCcEEEEcCCEEEEEEechHHH
Confidence 699999999999999999999999995 99999999999999999999987665 467999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCcceeeceEEe
Q 025897 88 RTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATS 167 (246)
Q Consensus 88 ~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~a 167 (246)
+.|.+.++.+++.|+++++++++++.+++.+++.+|.|+|+.+.|||++++||+|||+ +||+||.+||+|++.+++++|
T Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~a 159 (233)
T 1ryp_F 81 RVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDK-SGAHLLEFQPSGNVTELYGTA 159 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEET-TEEEEEEECTTSCEEEESEEE
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCCcCcceEEEEEEEeC-CcCEEEEECCCCCeeeeeEEE
Confidence 9999999999999999999999999999999999999999989999999999999997 789999999999999999999
Q ss_pred ecCChHHHHHHHHhhccCCCCC--CHHHHHHHHHHHHHHhhhcc-C-CCCcEEEEEEEcCCCcEEEcCHHHHHHHH
Q 025897 168 AGLKEQEAINFLEKKMKNDPAF--TFQETVQTAISTLQSVLQED-F-KASEIEVGVVSKENPEFRVLSIEEIDEHL 239 (246)
Q Consensus 168 ~G~g~~~a~~~Le~~~~~~~~~--s~~ea~~l~~~~l~~~~~~d-~-~~~~iei~ii~~~~~~~~~l~~~eI~~~l 239 (246)
+|++++.++++||+.|++.++| |++||++++++||..+. +| . +..+++|++|+++++ |++++++||+++|
T Consensus 160 iG~gs~~a~~~Le~~~~~~~~m~~s~eea~~~a~~al~~~~-~d~~~s~~~i~v~vi~~~~~-~~~l~~~ei~~~l 233 (233)
T 1ryp_F 160 IGARSQGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQSL-RDESLTVDNLSIAIVGKDTP-FTIYDGEAVAKYI 233 (233)
T ss_dssp ESTTHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHTTSC-CSSCCCTTTEEEEEEETTEE-EEEEEGGGGGGGC
T ss_pred ECCCcHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHh-hcccCCCCcEEEEEEECCCC-EEECCHHHHHhhC
Confidence 9999999999999999432389 99999999999999998 66 4 434899999999865 9999999998764
No 19
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=100.00 E-value=3.8e-51 Score=349.69 Aligned_cols=221 Identities=17% Similarity=0.227 Sum_probs=194.4
Q ss_pred cceeCCCCccc-hhccHHHHHhccCceEEEEEcCCeEEEEEeccCCcCccccCCceeeEEecCeEEEEEecchHHHHHHH
Q 025897 13 ITIFSPEGRLF-QVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLV 91 (246)
Q Consensus 13 ~t~f~p~Gr~~-Q~eya~~av~~~G~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~ 91 (246)
+.-|||||++. |||||.+++++ |+|+|||+++||||||+|++ +++.+||++|++|++|+++|+.+|++.|.
T Consensus 4 p~~~sPe~~~~~qvEYA~~av~~-Gtt~vgi~~~dgVVlaaD~r-------s~~~~KI~~I~d~i~~~~aG~~aD~~~l~ 75 (259)
T 1q5q_A 4 PYYASAEQIMRDRSELARKGIAR-GRSVVVLTFRDGVLFVAENP-------STALHKVSELYDRLGFAAVGKYNEFENLR 75 (259)
T ss_dssp -----CHHHHHHHHHHHHHHHHT-SCCEEEEECSSEEEEEECCS-------CSSSCSEEEEETTEEEEEEECHHHHHHHH
T ss_pred CcccCHHHHHHHHHHHHHHHHhc-CCcEEEEEeCCEEEEEEecC-------CCCcCcEEEeCCCEEEEEccCHHHHHHHH
Confidence 34689999996 99999999995 99999999999999999998 25779999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC-CCCCHHHHHHHHHH-HHHHHhhccCCCCccceeEEEEEc--C-CCCcEEEEECCCccee-eceE
Q 025897 92 QQARYEAAEFRFKYG-YEMPVDVLAKWIAD-KSQVYTQHAYMRPLGVVAMVLSID--E-ECGPRLFKCDPAGHFF-GHKA 165 (246)
Q Consensus 92 ~~~~~~~~~~~~~~~-~~~~~~~la~~l~~-~~~~~~~~~~~rP~~v~~ll~G~d--~-~~gp~Ly~id~~G~~~-~~~~ 165 (246)
+.++.+++.|++.++ ++++++.+++++++ +.|.|+ .+.|||+|++||+||| + ++||+||.+||+|++. ++++
T Consensus 76 ~~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~q~yt--~~~rP~~v~~lvaG~D~~~~~~gp~Ly~idp~G~~~~~~~~ 153 (259)
T 1q5q_A 76 RAGIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFT--EQPKPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQHF 153 (259)
T ss_dssp HHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHH--HSSSCCCEEEEEEECCCSSCCCCCEEEEEETTSCEEEESSE
T ss_pred HHHHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHhc--cCCCCceEEEEEEEEcccCCCCCCEEEEECCCCceeeCCCE
Confidence 999999999999988 49999999999999 667787 3678999999999999 3 4799999999999999 8899
Q ss_pred EeecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhh-----hccCCCCcEEEEEEEcCC--CcEEEcCHHHHHHH
Q 025897 166 TSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVL-----QEDFKASEIEVGVVSKEN--PEFRVLSIEEIDEH 238 (246)
Q Consensus 166 ~a~G~g~~~a~~~Le~~~~~~~~~s~~ea~~l~~~~l~~~~-----~~d~~~~~iei~ii~~~~--~~~~~l~~~eI~~~ 238 (246)
+|+|++++.++++||++| +++||++||++++++||..+. ++|++..+++|++|++++ ..|++++++||+++
T Consensus 154 ~aiG~gs~~a~~~Le~~~--~~~ms~eea~~la~~al~~~~~~~~~~rd~sg~~iev~vi~~~~~~~~~~~l~~~ei~~~ 231 (259)
T 1q5q_A 154 VVMGGTTEPIATAMRESY--RADLDLEAAVGIAVNALRQGGAGEGEKRNVDVASLEVAVLDQSRPRRAFRRIAGTALEQL 231 (259)
T ss_dssp EEESSSHHHHHHHHHHHC--CTTCCHHHHHHHHHHHHTTCC--------CCSSCSEEEEEETTSSSCCEEECCHHHHHTT
T ss_pred EEECCChHHHHHHHHhhc--cCCCCHHHHHHHHHHHHHHHhhcccccccCCCCcEEEEEEECCCCcCCeEECCHHHHHHH
Confidence 999999999999999998 679999999999999999998 788844489999999985 23999999999999
Q ss_pred HHHhhcc
Q 025897 239 LTAISER 245 (246)
Q Consensus 239 l~~i~~~ 245 (246)
+.++.++
T Consensus 232 ~~~~~~~ 238 (259)
T 1q5q_A 232 VPAEPAA 238 (259)
T ss_dssp SCCC---
T ss_pred HHHhhhc
Confidence 9888654
No 20
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=100.00 E-value=3.3e-49 Score=335.14 Aligned_cols=208 Identities=16% Similarity=0.223 Sum_probs=187.2
Q ss_pred hhccHHHHHhccCceEEEEEcCCeEEEEEeccCCcCccccCCceeeEEecCeEEEEEecchHHHHHHHHHHHHHHHHHHH
Q 025897 24 QVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRF 103 (246)
Q Consensus 24 Q~eya~~av~~~G~t~vgi~~~dgvvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~ 103 (246)
++|||.||+++ |+|+|||+++||||||+|++ +++.+||++|++|++|+++|+.+|++.|.+.++.+++.|++
T Consensus 16 r~EYA~~av~~-GtT~vgi~~kdgVVlaadkr-------~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~l~~~ 87 (248)
T 3mi0_A 16 RSELARKGIAR-AKSVVALAYAGGVLFVAENP-------SRSLQKISELYDRVGFAAAGKFNEFDNLRRGGIQFADTRGY 87 (248)
T ss_dssp HHHHHHHHHHT-SCCEEEEEETTEEEEEEECC-------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHhC-CCcEEEEEeCCEEEEEEeCC-------CCCCCCeEEECCCEEEEEccCHHHHHHHHHHHHHHHHHHHH
Confidence 58999999995 99999999999999999999 35779999999999999999999999999999999999999
Q ss_pred HhC-CCCCHHHHHHHHH-HHHHHHhhccCCCCccceeEEEEEcC---CCCcEEEEECCCcceee-ceEEeecCChHHHHH
Q 025897 104 KYG-YEMPVDVLAKWIA-DKSQVYTQHAYMRPLGVVAMVLSIDE---ECGPRLFKCDPAGHFFG-HKATSAGLKEQEAIN 177 (246)
Q Consensus 104 ~~~-~~~~~~~la~~l~-~~~~~~~~~~~~rP~~v~~ll~G~d~---~~gp~Ly~id~~G~~~~-~~~~a~G~g~~~a~~ 177 (246)
+++ ++++++.|+++++ .+.|.|+| +.|||+|++||+|||+ .+||+||++||+|++.+ ++++|+|++++.+++
T Consensus 88 ~~~~~~i~v~~la~~l~~~l~q~yt~--~~rP~gv~~liaG~D~~~~~~gp~Ly~~Dp~G~~~~e~~~~a~Gsgs~~a~~ 165 (248)
T 3mi0_A 88 AYDRRDVTGRQLANVYAQTLGTIFTE--QAKPYEVELCVAEVAHYGETKRPELYRITYDGSIADEPHFVVMGGTTEPIAN 165 (248)
T ss_dssp HSCGGGCCHHHHHHHHHHHHHHHHHH--SSSCCCEEEEEEECCCTTCCCCCEEEEECTTSCEEEESSEEEESSCHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHHHHHhcc--CCCCceEEEEEEEEcCCCCCCCCEEEEECCCeEEeecccEEEECccHHHHHH
Confidence 999 9999999999999 77788987 6899999999999997 47999999999999995 999999999999999
Q ss_pred HHHhhccCCCCCCHHHHHHHHHHHHHHhh-------hccCCCCcEEEEEEEcCC--CcEEEcCHHHHHHHHHHhh
Q 025897 178 FLEKKMKNDPAFTFQETVQTAISTLQSVL-------QEDFKASEIEVGVVSKEN--PEFRVLSIEEIDEHLTAIS 243 (246)
Q Consensus 178 ~Le~~~~~~~~~s~~ea~~l~~~~l~~~~-------~~d~~~~~iei~ii~~~~--~~~~~l~~~eI~~~l~~i~ 243 (246)
+||++| +++||++||++++++||..++ ++++...++||++|++++ +.|++++++||+++|.++.
T Consensus 166 ~Le~~y--~~~mt~eeai~la~~aL~~~~~~~~~~~~~~~~~~~iev~vv~~~g~~~~f~~l~~~ei~~~l~~~~ 238 (248)
T 3mi0_A 166 ALKESY--AENASLTDALRIAVAALRAGSADTSGGDQPTLGVASLEVAVLDANRPRRAFRRITGSALQALLVDQE 238 (248)
T ss_dssp HHHHHC--CTTCCHHHHHHHHHHHHHHC------------CCTTEEEEEEETTSSSCCEEECCHHHHHHTC----
T ss_pred HHHhhc--CCCCCHHHHHHHHHHHHHHHHhhcccCcccccCCCcEEEEEEECCCCcccEEECCHHHHHHHHHHcC
Confidence 999998 679999999999999999998 567777799999999986 4699999999999998764
No 21
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=2.2e-48 Score=325.06 Aligned_cols=203 Identities=23% Similarity=0.376 Sum_probs=189.3
Q ss_pred CceEEEEEcCCeEEEEEeccCC-cCccccCCceeeEEecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q 025897 36 GVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVL 114 (246)
Q Consensus 36 G~t~vgi~~~dgvvla~d~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 114 (246)
|+|+|||+++||||||+|++.+ +.++..++.+||++|++|++|+++|+.+|++.|.++++.+++.|+++++++++++.+
T Consensus 1 Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~l 80 (219)
T 3h4p_a 1 MTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLAC 80 (219)
T ss_dssp -CCEEEEEETTEEEEECCCCEEETTEEEETTCCCEEEEETTEEEECCSCHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHH
T ss_pred CccEEEEEECCEEEEEEcCCcccCCEeeccccceeEEecCCEEEEeeEcHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 7899999999999999999998 567788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCcceeece-EEeecCChHHHHHHHHhhccCCCCCCHHH
Q 025897 115 AKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHK-ATSAGLKEQEAINFLEKKMKNDPAFTFQE 193 (246)
Q Consensus 115 a~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~-~~a~G~g~~~a~~~Le~~~~~~~~~s~~e 193 (246)
++++++.++.+ +.|||++++||+|||+++||+||.+||+|++.+++ ++|+|+++++++++||+.| +++||++|
T Consensus 81 a~~l~~~~~~~----~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~--~~~ms~ee 154 (219)
T 3h4p_a 81 ATLLSNILHSS----RMFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGY--DRDMSVEE 154 (219)
T ss_dssp HHHHHHHHHHT----TTTTCCCCCEEEEEETTTEEEEEEECSSCCEEECSSEEEESTTHHHHHHHHHTSC--CTTCCHHH
T ss_pred HHHHHHHHHHh----cCCCceEEEEEEEEeCCCCcEEEEECCCCceEecCCEEEEcCCHHHHHHHHHHhc--CCCCCHHH
Confidence 99999999765 36899999999999976789999999999999999 9999999999999999998 68999999
Q ss_pred HHHHHHHHHHHhhhccCCCC-cEEEEEEEcCCCcEEEcCHHHHHHHHHHhhccC
Q 025897 194 TVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLSIEEIDEHLTAISERD 246 (246)
Q Consensus 194 a~~l~~~~l~~~~~~d~~~~-~iei~ii~~~~~~~~~l~~~eI~~~l~~i~~~~ 246 (246)
|++++++||..+.++|..++ +++|++|++++ |++++++||+++|.++++++
T Consensus 155 a~~la~~al~~~~~rd~~sg~~i~v~vi~~~g--~~~l~~~ei~~~l~~~~~~~ 206 (219)
T 3h4p_a 155 GIKLALNALKSAMERDTFSGNGISLAVITKDG--VKIFEDEEIEKILDSMKAKP 206 (219)
T ss_dssp HHHHHHHHHHHHHTSCSSCCSCCCEEEEETTE--EEECCHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCC--eEEcCHHHHHHHHHHhhccc
Confidence 99999999999999998776 79999999986 99999999999999998763
No 22
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=100.00 E-value=9.4e-47 Score=314.82 Aligned_cols=204 Identities=24% Similarity=0.424 Sum_probs=186.7
Q ss_pred HHHhccCceEEEEEcCCeEEEEEeccCC-cCccccCCceeeEEecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCC
Q 025897 30 KAVKAAGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYE 108 (246)
Q Consensus 30 ~av~~~G~t~vgi~~~dgvvla~d~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 108 (246)
.++. +|+|+|||+++||||||+|++.+ ++++.+++.+||++|+++++++++|+.+|++.|.++++.+++.|+++++++
T Consensus 3 ~~~~-~Gtt~vgi~~~dgVvlaaD~r~~~g~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (217)
T 1yar_H 3 QTLE-TGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVN 81 (217)
T ss_dssp -------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCCC-CCccEEEEEeCCEEEEEEcCCCCCCCEEecCccCCeEEeCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 3566 59999999999999999999998 688888899999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCcceeeceEEeecCChHHHHHHHHhhccCCCC
Q 025897 109 MPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPA 188 (246)
Q Consensus 109 ~~~~~la~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~a~~~Le~~~~~~~~ 188 (246)
++++.+++.+++.++.+ +.|||++++||+||| +||+||.+||+|++.+++++|+|+|+++++++||+.| +++
T Consensus 82 ~~v~~la~~l~~~~~~~----r~rp~~v~~lvaG~D--~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~--~~~ 153 (217)
T 1yar_H 82 MPIEAVATLLSNMLNQV----KYMPYMVQLLVGGID--TAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQY--SEK 153 (217)
T ss_dssp CCHHHHHHHHHHHHHHT----TTSCCCEEEEEEEES--SSEEEEEECTTCCEEEESEEEESTTHHHHHHHHHHHC--CTT
T ss_pred CCHHHHHHHHHHHHHhc----CCCCceEEEEEEEEC--CCCEEEEECCCCCeEecCEEEEcCCHHHHHHHHHhhc--ccC
Confidence 99999999999999653 378999999999999 5899999999999999999999999999999999998 679
Q ss_pred CCHHHHHHHHHHHHHHhhhccCCCC-cEEEEEEEcCCCcEEEcCHHHHHHHHHHhh
Q 025897 189 FTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLSIEEIDEHLTAIS 243 (246)
Q Consensus 189 ~s~~ea~~l~~~~l~~~~~~d~~~~-~iei~ii~~~~~~~~~l~~~eI~~~l~~i~ 243 (246)
||++||++++++||..+.++|..++ +++|++|+++.+ |+.++++||++++.++.
T Consensus 154 ~s~eea~~la~~al~~~~~rd~~s~~~i~v~vi~~~~g-~~~~~~~ei~~~~~~~~ 208 (217)
T 1yar_H 154 MTVDEGVDLVIRAISAAKQRDSASGGMIDVAVITRKDG-YVQLPTDQIESRIRKLG 208 (217)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTCCSCCEEEEEETTTE-EEECCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEECCCC-EEEcCHHHHHHHHHHHH
Confidence 9999999999999999999997665 799999999433 99999999999998875
No 23
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=100.00 E-value=1.6e-46 Score=310.10 Aligned_cols=198 Identities=22% Similarity=0.371 Sum_probs=187.1
Q ss_pred ceEEEEEcCCeEEEEEeccCC-cCccccCCceeeEEecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 025897 37 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 115 (246)
Q Consensus 37 ~t~vgi~~~dgvvla~d~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 115 (246)
+|+|||+++||||||+|++.+ ++++.+++.+||++|++|++++++|+.+|++.|.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (202)
T 1j2q_H 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIA 80 (202)
T ss_dssp CCEEEEEETTEEEEEEECCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEECCCcCcCCEEeeccccCEEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 589999999999999999998 6888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCcceeece-EEeecCChHHHHHHHHhhccCCCCCCHHHH
Q 025897 116 KWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHK-ATSAGLKEQEAINFLEKKMKNDPAFTFQET 194 (246)
Q Consensus 116 ~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~-~~a~G~g~~~a~~~Le~~~~~~~~~s~~ea 194 (246)
+.+++.++.+ +.|||++++||+|||+ +||+||.+||+|++.+++ ++|+|+|+++++++||+.| +++||++||
T Consensus 81 ~~l~~~~~~~----r~rp~~~~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~~aiG~g~~~a~~~Le~~~--~~~~s~eea 153 (202)
T 1j2q_H 81 TLTSNLLNSY----RYFPYLVQLLIGGIDS-EGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRF--TPEIGVDEA 153 (202)
T ss_dssp HHHHHHHHHT----TTSCCCEEEEEEEEET-TEEEEEEECTTCCEEEESSEEEESTTHHHHHHHHHHHC--CTTCCHHHH
T ss_pred HHHHHHHHhh----CCCCceEEEEEEEEeC-CCCEEEEECCCCCeeecCCEEEEcCCHHHHHHHHHhhc--CCCcCHHHH
Confidence 9999999653 3789999999999997 789999999999999999 9999999999999999998 679999999
Q ss_pred HHHHHHHHHHhhhccCCCC-cEEEEEEEcCCCcEEEcCHHHHHHHHHHhh
Q 025897 195 VQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLSIEEIDEHLTAIS 243 (246)
Q Consensus 195 ~~l~~~~l~~~~~~d~~~~-~iei~ii~~~~~~~~~l~~~eI~~~l~~i~ 243 (246)
++++++||..+.++|..++ +++|++|++++ |+.++++||++++.+|+
T Consensus 154 ~~la~~al~~~~~~d~~s~~~i~v~vi~~~g--~~~l~~~ei~~~~~~~~ 201 (202)
T 1j2q_H 154 VELAVRAIYSAMKRDSASGDGIDVVKITEDE--FYQYSPEEVEQILAKFR 201 (202)
T ss_dssp HHHHHHHHHHHHTTCTTSCSCEEEEEECSSC--EEECHHHHHHHHGGGTT
T ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEEEeCCC--eEEeCHHHHHHHHHHhh
Confidence 9999999999999997665 79999999985 99999999999999874
No 24
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=100.00 E-value=5e-47 Score=328.53 Aligned_cols=233 Identities=14% Similarity=0.109 Sum_probs=175.0
Q ss_pred CCCCCcccceeCCCCcc-----ch--hccHHHHHhccCceEEEEEcCCeEEEEEeccCC-cCccccCCceeeEEecCeEE
Q 025897 6 GGGYDRHITIFSPEGRL-----FQ--VEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLG 77 (246)
Q Consensus 6 ~~~yd~~~t~f~p~Gr~-----~Q--~eya~~av~~~G~t~vgi~~~dgvvla~d~~~~-~~l~~~~~~~Ki~~i~~~i~ 77 (246)
+++|+..+...+|+.-. +| +|||.+ ++ +|+|+|||+++||||||+|++.+ +.++.+++.+||++|++|++
T Consensus 22 ~~~f~~~~~~~~~~~l~~~~~~~~~~~~ya~~-v~-~GtTiVgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~i~d~i~ 99 (291)
T 2jay_A 22 LSSFTDFLRRQAPELLPASISGGAPLAGGDAQ-LP-HGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTA 99 (291)
T ss_dssp --------------------------------------CCEEEEEETTEEEEEECCC--------CCCCCCEEEEETTEE
T ss_pred CccHHHHhhhcChhhccccccccCcCcccccc-cc-CCcEEEEEEECCEEEEEECCCccCCCeeecCCcccEEEeCCcEE
Confidence 45688888888887543 23 689999 87 49999999999999999999998 56777888999999999999
Q ss_pred EEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCccceeEEEEEcCCCC-----cEEE
Q 025897 78 LLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECG-----PRLF 152 (246)
Q Consensus 78 ~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~g-----p~Ly 152 (246)
|+++|+.+|++.|.++++.+++.|++.++++++++.+++.+++.++.+++ ...|||+|++||+|||++++ |+||
T Consensus 100 ~~~aG~~aD~~~l~~~lr~~~~~y~~~~~~~i~v~~la~~la~~l~~~~~-~~~rpf~v~~lvaG~D~~g~~~~~~p~Ly 178 (291)
T 2jay_A 100 TGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLA-AAMQGLLALPLLAGYDIHASDPQSAGRIV 178 (291)
T ss_dssp EEEESCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTCHH-HHHHTCCCEEEEEEECTTCSCSTTCEEEE
T ss_pred EEEcccHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhhh-hhccccceeEEEEEEeCCCCcCCCCCEEE
Confidence 99999999999999999999999999999999999999999999988765 35689999999999997555 8999
Q ss_pred EECCCccee--eceEEeecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCCCcE--------EEEEEEc
Q 025897 153 KCDPAGHFF--GHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEI--------EVGVVSK 222 (246)
Q Consensus 153 ~id~~G~~~--~~~~~a~G~g~~~a~~~Le~~~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~~~i--------ei~ii~~ 222 (246)
.+||+|++. +++++|+|+|+++++++||+.| +++||++||++++++||..+.++|+.++++ +|++|++
T Consensus 179 ~iDp~G~~~e~~~~~~aiGsgs~~a~~~Le~~~--~~~ms~eEAi~la~~aL~~a~~~D~~sg~~e~vr~~~~~v~vi~~ 256 (291)
T 2jay_A 179 SFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLY--SQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDA 256 (291)
T ss_dssp EECTTSCEEECSSSEEEESTTHHHHHHHHHHHG--GGCCSHHHHHHHHHHHHHHC----------------CCEEEEEET
T ss_pred EECCCCcEEecCCCEEEEecCHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHhhCCCCCCcccccccCCEEEEEEC
Confidence 999999998 8899999999999999999998 578999999999999999999999888776 5999999
Q ss_pred CCCcEEEcCHHHHHHHHHHhhcc
Q 025897 223 ENPEFRVLSIEEIDEHLTAISER 245 (246)
Q Consensus 223 ~~~~~~~l~~~eI~~~l~~i~~~ 245 (246)
++ |++++++||++++.++.++
T Consensus 257 dg--~~~l~~~ei~~~~~~~~~~ 277 (291)
T 2jay_A 257 DG--AVDVPESRIAELARAIIES 277 (291)
T ss_dssp TE--EEECCHHHHHHHHHHC---
T ss_pred CC--eEEcCHHHHHHHHHHHHHh
Confidence 85 9999999999999998764
No 25
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=100.00 E-value=2.6e-46 Score=324.25 Aligned_cols=212 Identities=18% Similarity=0.184 Sum_probs=196.8
Q ss_pred HHHHHhccCceEEEEEcCCeEEEEEeccCC-cCccccCCceeeEEecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhC
Q 025897 28 AFKAVKAAGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYG 106 (246)
Q Consensus 28 a~~av~~~G~t~vgi~~~dgvvla~d~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~ 106 (246)
|.+|+++ |+|+|||+++||||||+|++.+ ++++..++.+||++|+++++|+++|+.+|++.|.++++.+++.|+++++
T Consensus 58 a~~Av~~-GtTiVgIk~kdGVVlAaD~r~t~G~li~~~~~~KI~~I~~~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~g 136 (294)
T 1q5r_H 58 SGDLAPH-GTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEG 136 (294)
T ss_dssp --CCSCB-CCCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHhc-CceEEEEEECCEEEEEEcCccccCceeecCCcceEEEECCcEEEEEeecHHHHHHHHHHHHHHHHHhhHhhC
Confidence 7889984 9999999999999999999998 6888888999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhhccCCCCccceeEEEEEcCCCC-----cEEEEECCCcceeec--eEEeecCChHHHHHHH
Q 025897 107 YEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECG-----PRLFKCDPAGHFFGH--KATSAGLKEQEAINFL 179 (246)
Q Consensus 107 ~~~~~~~la~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~g-----p~Ly~id~~G~~~~~--~~~a~G~g~~~a~~~L 179 (246)
++++++.+++.|++.++.++++. .|||++++||+|||+++| |+||.+||+|++.++ +++|+|+|+++++++|
T Consensus 137 ~~isv~~la~~la~~l~~~~~~~-~rp~~v~lLvaG~D~~~g~~~~~p~Ly~iDp~G~~~e~~~~~~AiGsgs~~a~~~L 215 (294)
T 1q5r_H 137 VPLTFDGKANRLASMVRGNLGAA-MQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSAL 215 (294)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHH-TTTTCEEEEEEEECTTCSCTTSCEEEEEECSSSCEEECCSSEEEESTTHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhhh-cCCcceEEEEEEEeCCCCcCCCCCEEEEECCCCeEEecCCCeEEEecCcHHHHHHH
Confidence 99999999999999999988764 899999999999997557 999999999999999 8999999999999999
Q ss_pred HhhccCCCCCCHHHHHHHHHHHHHHhhhccCCCCc---E-----EEEEEEcCCCcEEEcCHHHHHHHHHHhhcc
Q 025897 180 EKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASE---I-----EVGVVSKENPEFRVLSIEEIDEHLTAISER 245 (246)
Q Consensus 180 e~~~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~~~---i-----ei~ii~~~~~~~~~l~~~eI~~~l~~i~~~ 245 (246)
|+.| +++||++||++++++||..+.++|+.+++ + +|++|++++ |++++++||++++.+|.+.
T Consensus 216 e~~y--~~~ms~eEAi~la~~aL~~a~~rD~~sG~~~~ir~i~~ev~vI~~~g--~~~l~~~ei~~~l~~i~~~ 285 (294)
T 1q5r_H 216 KKIY--SPDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAG--AVHVSEETTSELARRIVAE 285 (294)
T ss_dssp HHHC--CSSCCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTE--EEECCHHHHHHHHHHHCC-
T ss_pred HHhc--cCCCCHHHHHHHHHHHHHHHHhhccccCCchhhcccCCEEEEEECCC--EEEcCHHHHHHHHHHHHHH
Confidence 9998 68999999999999999999999987653 5 999999876 9999999999999998764
No 26
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=100.00 E-value=8.6e-47 Score=326.28 Aligned_cols=211 Identities=12% Similarity=0.175 Sum_probs=190.9
Q ss_pred ccHHHHHhccCceEEEEEcCCeEEEEEeccCC-cCccccCCceeeEEecCeEEEEEecchHHHHHHHHHHHHHHHHHHHH
Q 025897 26 EYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFK 104 (246)
Q Consensus 26 eya~~av~~~G~t~vgi~~~dgvvla~d~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~ 104 (246)
.++..++. +|+|+|||+++||||||+|+|.+ +.++..++.+||++|+++++++++|+.+|++.|.++++.+++.|+++
T Consensus 66 ~~~~~~v~-~GtT~vgik~~dGVVlAaD~r~t~G~li~~~~~~KI~~I~d~i~~~~aG~~AD~~~l~~~lr~~~~~y~~~ 144 (287)
T 3nzj_K 66 PDCKIKIA-HGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELR 144 (287)
T ss_dssp -----------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECEECHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhec-cCceEEEEEECCEEEEEEccccccCceeecCCcceEEEEcCcEEEEecCCHHHHHHHHHHHHHHHHHHHHH
Confidence 36788998 59999999999999999999998 68888889999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCcceeeceEEeecCChHHHHHHHHhhcc
Q 025897 105 YGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMK 184 (246)
Q Consensus 105 ~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~a~~~Le~~~~ 184 (246)
++++++++.+++++++.++.|++ +||++++||+|||+++||+||.+||+|++.+++++|+|+|+++++++||+.|
T Consensus 145 ~~~~isv~~la~~ls~~l~~~r~----~p~~v~~lvaG~D~~~gp~Ly~iDp~G~~~~~~~~AiGsgs~~a~~~Le~~y- 219 (287)
T 3nzj_K 145 EKERISVAAASKILSNLVYQYKG----AGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNY- 219 (287)
T ss_dssp HSSCCCHHHHHHHHHHHHHHTTT----SCCCEEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHTSC-
T ss_pred hCCCCCHHHHHHHHHHHHHhhcC----CCceEEEEEEEEcCCCCCEEEEECCCceEEEcCeEEEecchHHHHHHHHHhh-
Confidence 99999999999999999987653 4999999999999657999999999999999999999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhhccCCCC-cEEEEEEEcCCCcEEEcCHHHHHHHHHHhhcc
Q 025897 185 NDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLSIEEIDEHLTAISER 245 (246)
Q Consensus 185 ~~~~~s~~ea~~l~~~~l~~~~~~d~~~~-~iei~ii~~~~~~~~~l~~~eI~~~l~~i~~~ 245 (246)
+++||++||++++++||..+.++|+.++ +++|++|++++ |++++++||++++.++.|+
T Consensus 220 -~~dms~eEAi~la~~aL~~a~~rD~~sg~~i~V~vItkdg--~~~l~~~ev~~~l~~~~e~ 278 (287)
T 3nzj_K 220 -KWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTEDG--WIYHGNHDVGELFWKVKEE 278 (287)
T ss_dssp -CTTCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTE--EEEEEEEEHHHHHHHHHHH
T ss_pred -cCCCCHHHHHHHHHHHHHHHHhhCcCCCCceEEEEEeCCC--EEEeCHHHHHHHHHHHHHh
Confidence 6899999999999999999999998876 79999999996 9999999999999988774
No 27
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=100.00 E-value=8.6e-46 Score=312.50 Aligned_cols=204 Identities=18% Similarity=0.193 Sum_probs=191.4
Q ss_pred ceEEEEEcCCeEEEEEeccCC-cCccccCCceeeEEecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 025897 37 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 115 (246)
Q Consensus 37 ~t~vgi~~~dgvvla~d~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 115 (246)
+|+|||+++||||||+|++.+ ++++.+++.+||++|+++++|+++|+.+|++.|.++++.+++.|+++++++++++.++
T Consensus 1 tT~vgi~~~dgVVlaaD~r~~~g~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (235)
T 1q5q_H 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKA 80 (235)
T ss_dssp CCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEECCCCCcCCEEecCCcCcEEEeCCcEEEEcCCcHHHHHHHHHHHHHHHHHhHHHhCCCCCHHHHH
Confidence 589999999999999999998 6888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCccceeEEEEEcCCCC-----cEEEEECCCcceeec--eEEeecCChHHHHHHHHhhccCCCC
Q 025897 116 KWIADKSQVYTQHAYMRPLGVVAMVLSIDEECG-----PRLFKCDPAGHFFGH--KATSAGLKEQEAINFLEKKMKNDPA 188 (246)
Q Consensus 116 ~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~g-----p~Ly~id~~G~~~~~--~~~a~G~g~~~a~~~Le~~~~~~~~ 188 (246)
+.|++.++.++++. .|||++++||+|||+++| |+||.+||+|++.++ +++|+|+|+++++++||+.| +++
T Consensus 81 ~~l~~~~~~~~~~~-~rp~~v~~lvaG~D~~~g~~~~~p~Ly~idp~G~~~~~~~~~~aiGsgs~~a~~~Le~~~--~~~ 157 (235)
T 1q5q_H 81 NRLASMVRGNLGAA-MQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIY--SPD 157 (235)
T ss_dssp HHHHHHHHTTHHHH-TTTCCEEEEEEEECTTCSSTTSCEEEEEECTTSCEEECCSSEEEESTTHHHHHHHHHHHC--CTT
T ss_pred HHHHHHHHHHHHhh-hcccceEEEEEEEECCCCccCCCCEEEEECCCCceEEeCCCeEEECCCHHHHHHHHHhhc--CCC
Confidence 99999999888764 789999999999998557 999999999999999 99999999999999999998 689
Q ss_pred CCHHHHHHHHHHHHHHhhhccCCCCc---E-----EEEEEEcCCCcEEEcCHHHHHHHHHHhhcc
Q 025897 189 FTFQETVQTAISTLQSVLQEDFKASE---I-----EVGVVSKENPEFRVLSIEEIDEHLTAISER 245 (246)
Q Consensus 189 ~s~~ea~~l~~~~l~~~~~~d~~~~~---i-----ei~ii~~~~~~~~~l~~~eI~~~l~~i~~~ 245 (246)
||++||++++++||..+.++|+.+++ + +|++|++++ |+.++++||++++.++.++
T Consensus 158 ms~eeA~~la~~al~~a~~~d~~sg~~~~i~~~~~ev~vi~~~g--~~~l~~~ei~~~~~~~~~~ 220 (235)
T 1q5q_H 158 SDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAG--AVHVSEETTSELARRIVAE 220 (235)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTE--EEECCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhCcccCCcccccccccEEEEEeCCC--eEEeCHHHHHHHHHHHHHH
Confidence 99999999999999999999987653 2 999999876 9999999999999998764
No 28
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=100.00 E-value=3.6e-46 Score=310.17 Aligned_cols=201 Identities=12% Similarity=0.184 Sum_probs=189.0
Q ss_pred ceEEEEEcCCeEEEEEeccCC-cCccccCCceeeEEecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 025897 37 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 115 (246)
Q Consensus 37 ~t~vgi~~~dgvvla~d~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 115 (246)
+|+|||+++||||||+|++.+ ++++.+++.+||++|++|++++++|+.+|++.|.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (212)
T 1ryp_L 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAAS 80 (212)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCCeEecCcccceeeeCCcEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 589999999999999999998 5888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCcceeeceEEeecCChHHHHHHHHhhccCCCCCCHHHHH
Q 025897 116 KWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETV 195 (246)
Q Consensus 116 ~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~a~~~Le~~~~~~~~~s~~ea~ 195 (246)
+++++.++.|++ .||++++||+|||+++||+||.+||+|++.+++++|+|+|+++++++||+.| +++||++||+
T Consensus 81 ~~l~~~~~~~~~----~p~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~--~~~~s~eea~ 154 (212)
T 1ryp_L 81 KILSNLVYQYKG----AGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNY--KWDLSVEDAL 154 (212)
T ss_dssp HHHHHHHHHTTT----SCCCBEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHHHC--CTTCCHHHHH
T ss_pred HHHHHHHHhhCC----CCceEEEEEEEEeCCCCCEEEEEcCCceeEecCCEEEcCCHHHHHHHHHhhC--CCCCCHHHHH
Confidence 999999988765 3999999999999657899999999999999999999999999999999998 6799999999
Q ss_pred HHHHHHHHHhhhccCCCC-cEEEEEEEcCCCcEEEcCHHHHHHHHHHhhcc
Q 025897 196 QTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLSIEEIDEHLTAISER 245 (246)
Q Consensus 196 ~l~~~~l~~~~~~d~~~~-~iei~ii~~~~~~~~~l~~~eI~~~l~~i~~~ 245 (246)
+++++||..+.++|..++ +++|++|++++ |++++++||++++.++.++
T Consensus 155 ~la~~al~~~~~rd~~s~~~i~v~vi~~~g--~~~~~~~ei~~~~~~~~~~ 203 (212)
T 1ryp_L 155 YLGKRSILAAAHRDAYSGGSVNLYHVTEDG--WIYHGNHDVGELFWKVKEE 203 (212)
T ss_dssp HHHHHHHHHHHHHBTTCCSEEEEEEEETTE--EEEEEEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCCceEEEEEcCCc--eEEECHHHHHHHHHHHHHh
Confidence 999999999999997665 79999999886 9999999999999888653
No 29
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=100.00 E-value=1.1e-45 Score=305.49 Aligned_cols=199 Identities=15% Similarity=0.202 Sum_probs=187.1
Q ss_pred ceEEEEEcCCeEEEEEeccCC-cCccccCCceeeEEecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 025897 37 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 115 (246)
Q Consensus 37 ~t~vgi~~~dgvvla~d~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 115 (246)
+|+|||+++||||||+|++.+ +.++.+++.+||++|++|++++++|+.+|++.|.+.++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (204)
T 1iru_L 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAAS 80 (204)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCCEEEcCcccceEEcCCCEEEEccCcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 589999999999999999998 5788888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCcceeeceEEeecCChHHHHHHHHhhccCCCCCCHHHHH
Q 025897 116 KWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETV 195 (246)
Q Consensus 116 ~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~a~~~Le~~~~~~~~~s~~ea~ 195 (246)
+++++.++.|+ .+||++++||+|||+ +||+||.+||+|++.+++++|+|+|+++++++||+.| +++||++||+
T Consensus 81 ~~l~~~~~~~r----~~~~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~--~~~~s~eea~ 153 (204)
T 1iru_L 81 KLLANMVYQYK----GMGLSMGTMICGWDK-RGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGY--SYDLEVEQAY 153 (204)
T ss_dssp HHHHHHHHTTT----TSCCCBEEEEEEECS-SSEEEEEEESSSCEEECSEEEESTTHHHHHHHHHTTC--CTTCCHHHHH
T ss_pred HHHHHHHHHhC----CCCeeEEEEEEEEeC-CCCEEEEECCCCcEEEeCCEEEEcCHHHHHHHHhccC--CCCCCHHHHH
Confidence 99999997663 358999999999997 7999999999999999999999999999999999998 5789999999
Q ss_pred HHHHHHHHHhhhccCCCC-cEEEEEEEcCCCcEEEcCHHHHHHHHHHhhc
Q 025897 196 QTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLSIEEIDEHLTAISE 244 (246)
Q Consensus 196 ~l~~~~l~~~~~~d~~~~-~iei~ii~~~~~~~~~l~~~eI~~~l~~i~~ 244 (246)
+++++||..+.++|+.++ +++|++|++++ |+.++++||++++.++..
T Consensus 154 ~l~~~al~~~~~rd~~s~~~i~v~vi~~~g--~~~l~~~ei~~~~~~~~~ 201 (204)
T 1iru_L 154 DLARRAIYQATYRDAYSGGAVNLYHVREDG--WIRVSSDNVADLHEKYSG 201 (204)
T ss_dssp HHHHHHHHHHHHHBTTCCSEEEEEEECSSC--EEEEEEEEHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCccCCCceEEEEEeCCc--eEEeCHHHHHHHHHHhcc
Confidence 999999999999997555 79999999976 999999999999998864
No 30
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=100.00 E-value=3e-46 Score=309.16 Aligned_cols=198 Identities=15% Similarity=0.196 Sum_probs=185.6
Q ss_pred ceEEEEEcCCeEEEEEeccCCc-CccccCCceeeEEecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 025897 37 VTSIGVRGKDSVCVVTQKKVPD-KLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 115 (246)
Q Consensus 37 ~t~vgi~~~dgvvla~d~~~~~-~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 115 (246)
+|+|||+++||||||+|+|.+. .++.+++.+||++|++|++++++|+.+|++.|.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (205)
T 1iru_H 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAA 80 (205)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEecCCcCceEEcCCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 5899999999999999999984 488888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCcceeeceEEeecCChHHHHHHHHhhccCCCCCCHHHHH
Q 025897 116 KWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETV 195 (246)
Q Consensus 116 ~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~a~~~Le~~~~~~~~~s~~ea~ 195 (246)
+.+++.++.|++ ||++++||+|||+++||+||.+||+|++.+++++++|+|+++++++||+.| +++||++||+
T Consensus 81 ~~l~~~~~~~~~-----p~~~~~lvaG~D~~~gp~ly~~d~~G~~~~~~~~a~Gsgs~~a~~~Le~~~--~~~~s~eea~ 153 (205)
T 1iru_H 81 SLFKEMCYRYRE-----DLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATY--REGMTKEECL 153 (205)
T ss_dssp HHHHHHHHHTTT-----TCCEEEEEEEEETTTEEEEEEECTTSCCEECSEEEESGGGGGGHHHHHHHC--CTTCCHHHHH
T ss_pred HHHHHHHHhcCc-----CccEEEEEEEEeCCCCCEEEEECCCCcEEecCEEEECCCHHHHHHHHHHhc--CCCCCHHHHH
Confidence 999999987753 999999999999767899999999999999999999999999999999998 6799999999
Q ss_pred HHHHHHHHHhhhccCCCC-cEEEEEEEcCCCcEEEcCHHHHHHHHHH
Q 025897 196 QTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLSIEEIDEHLTA 241 (246)
Q Consensus 196 ~l~~~~l~~~~~~d~~~~-~iei~ii~~~~~~~~~l~~~eI~~~l~~ 241 (246)
+++++||..+.++|..++ +++|++|++++..++.++++||++++.+
T Consensus 154 ~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~l~~~ei~~~~~~ 200 (205)
T 1iru_H 154 QFTANALALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIPKFAVA 200 (205)
T ss_dssp HHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEECGGGSCCCCCC
T ss_pred HHHHHHHHHHHHhccccCCcEEEEEEeCCCeEEEEeChHHhhHHHhh
Confidence 999999999999997665 8999999999877899999999887654
No 31
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=100.00 E-value=4.2e-46 Score=311.25 Aligned_cols=204 Identities=14% Similarity=0.189 Sum_probs=188.3
Q ss_pred HHHhccCceEEEEEcCCeEEEEEeccCC-cCccccCCceeeEEecCeEEEEEecchHHHHHHHHHHHHHHHHHHH-HhCC
Q 025897 30 KAVKAAGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRF-KYGY 107 (246)
Q Consensus 30 ~av~~~G~t~vgi~~~dgvvla~d~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~-~~~~ 107 (246)
++++ +|+|+|||+++||||||+|++.+ +.++.+++.+||++|+++++++++|+.+|++.|.+.++.+++.|++ ++++
T Consensus 3 ~av~-~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (219)
T 1iru_N 3 NPMV-TGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGH 81 (219)
T ss_dssp SCCS-EECCCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred CCcc-CCceEEEEEeCCEEEEEECCccccCcEEecCCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5677 49999999999999999999998 6888888999999999999999999999999999999999999998 9999
Q ss_pred CCCHHHHHHHHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCcceeeceEEeecCChHHHHHHHHhhccCCC
Q 025897 108 EMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDP 187 (246)
Q Consensus 108 ~~~~~~la~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~a~~~Le~~~~~~~ 187 (246)
+++++.+++.+++.+ |+++.+.|||++++||+|||+ +||+||.+||+|++.+++++|+|+|+++++++||+.|++.+
T Consensus 82 ~~~v~~la~~l~~~l--y~~r~~~~P~~v~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~ 158 (219)
T 1iru_N 82 SYSPRAIHSWLTRAM--YSRRSKMNPLWNTMVIGGYAD-GESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQP 158 (219)
T ss_dssp CCCHHHHHHHHHHHH--HHHHHTTCCCCEEEEEEEEET-TEEEEEEECSSCCEEECSEEECTTHHHHTHHHHHHHHTSCS
T ss_pred CCCHHHHHHHHHHHH--HHhcccCCCceEEEEEEEEEC-CCCEEEEECCCCCeEECCeEEECccHHHHHHHHHhhcCCCC
Confidence 999999999999998 556667899999999999997 69999999999999999999999999999999999994323
Q ss_pred CCCHHHHHHHHHHHHHHhhhccCCCC-cEEEEEEEcCCCcEEEcCHHHHHHHH
Q 025897 188 AFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLSIEEIDEHL 239 (246)
Q Consensus 188 ~~s~~ea~~l~~~~l~~~~~~d~~~~-~iei~ii~~~~~~~~~l~~~eI~~~l 239 (246)
+||++||++++++||..+.++|+.++ +++|++|++++ ++.+++++|+..+
T Consensus 159 ~mt~eea~~l~~~al~~~~~~d~~sg~~i~v~vi~~~g--~~~~~~~~i~~~~ 209 (219)
T 1iru_N 159 VLSQTEARDLVERCMRVLYYRDARSYNRFQTATVTEKG--VEIEGPLSTETNW 209 (219)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTE--EEEEEEECCCCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEcCCC--EEEcCCeeccchh
Confidence 99999999999999999999998765 89999999987 9999988877653
No 32
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=100.00 E-value=3.7e-46 Score=314.41 Aligned_cols=203 Identities=14% Similarity=0.225 Sum_probs=188.7
Q ss_pred HHHhccCceEEEEEcCCeEEEEEeccCC-cCccccCCceeeEEecCeEEEEEecchHHHHHHHHHHHHHHHHHHH-----
Q 025897 30 KAVKAAGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRF----- 103 (246)
Q Consensus 30 ~av~~~G~t~vgi~~~dgvvla~d~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~----- 103 (246)
++++ +|+|+|||+++||||||+|++.+ +.++.+++.+||++|++|++|+++|+.+|++.|.++++.+++.|++
T Consensus 3 ~av~-~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (233)
T 1ryp_N 3 QPIV-TGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLA 81 (233)
T ss_dssp CCCE-EECCEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTT
T ss_pred cccc-CCceEEEEEECCEEEEEEcCccccCCeeecCCcCceEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHhhccchh
Confidence 5677 49999999999999999999998 6788888999999999999999999999999999999999999999
Q ss_pred HhCCCCCHHHHHHHHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCcceeeceEEeecCChHHHHHHHHhhc
Q 025897 104 KYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKM 183 (246)
Q Consensus 104 ~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~a~~~Le~~~ 183 (246)
+++++++++.+++.+++.+ |+++.+.|||++++||+|||+++||+||.+||+|++.+++++|+|+++++++++||+.|
T Consensus 82 ~~~~~~~v~~la~~l~~~l--y~~r~~~~P~~v~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~ 159 (233)
T 1ryp_N 82 DAEEALEPSYIFEYLATVM--YQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVV 159 (233)
T ss_dssp TTTTSCCHHHHHHHHHHHH--HHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHHHHHHHTTTC
T ss_pred hcCCCCCHHHHHHHHHHHH--HHhcCCCCCceEEEEEEEEcCCCCEEEEEECCCcCeEEcCEEEECcCHHHHHHHHHHhh
Confidence 8999999999999999998 56666789999999999999756999999999999999999999999999999999998
Q ss_pred cCCC-----CCCHHHHHHHHHHHHHHhhhccCCCC-cEEEEEEEcCCCcEEEcCHHHHHHH
Q 025897 184 KNDP-----AFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLSIEEIDEH 238 (246)
Q Consensus 184 ~~~~-----~~s~~ea~~l~~~~l~~~~~~d~~~~-~iei~ii~~~~~~~~~l~~~eI~~~ 238 (246)
++ +||++||++++++||..+.++|+.++ +++|++|+++++ ++.++++||+++
T Consensus 160 --~~~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~g-~~~~~~~~i~~~ 217 (233)
T 1ryp_N 160 --DRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTG-LTFKKNLQVENM 217 (233)
T ss_dssp --SSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTE-EEEEEEEECCSC
T ss_pred --ccccccCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEECCCC-eEEcChHhcccc
Confidence 45 89999999999999999999998766 799999999833 999999888776
No 33
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=100.00 E-value=1.2e-43 Score=295.06 Aligned_cols=189 Identities=15% Similarity=0.260 Sum_probs=173.9
Q ss_pred cCceEEEEEcCCeEEEEEeccCCc-CccccCCceeeEEecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Q 025897 35 AGVTSIGVRGKDSVCVVTQKKVPD-KLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDV 113 (246)
Q Consensus 35 ~G~t~vgi~~~dgvvla~d~~~~~-~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 113 (246)
+|+|+|||+++||||||+|++.+. .++.+++.+||++|+++++++++|+.+|++.|.++++.+++.|+++++++++++.
T Consensus 8 ~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~ 87 (213)
T 1iru_M 8 NGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGA 87 (213)
T ss_dssp CCCEEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHH
T ss_pred CCCcEEEEEeCCEEEEEECCCcccCCEEecCCCCcEEEcCCCEEEEccccHHHHHHHHHHHHHHHHHHHHhcCCCCCHHH
Confidence 599999999999999999999985 4455578899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCcceeeceEEeecCChHHHHHHHHhhcc-------CC
Q 025897 114 LAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMK-------ND 186 (246)
Q Consensus 114 la~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~a~~~Le~~~~-------~~ 186 (246)
+++++++.+ |+++ .|||++++||+|||++++|+||.+||+|++.+++++|+|+|+++++++||+.|+ ++
T Consensus 88 la~~l~~~~--y~~r--~~P~~v~~lvaG~D~~g~p~Ly~id~~G~~~~~~~~aiGsg~~~a~~~Le~~~~~~~~~~~~~ 163 (213)
T 1iru_M 88 IAAMLSTIL--YSRR--FFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEH 163 (213)
T ss_dssp HHHHHHHHH--HHTT--TSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTTCCSCSSCCC
T ss_pred HHHHHHHHH--HhhC--CCCceEEEEEEEEcCCCCEEEEEECCCCCEEECCEEEEeeCHHHHHHHHhhccccccccccCC
Confidence 999999998 6654 789999999999997566999999999999999999999999999999999953 25
Q ss_pred CCCCHHHHHHHHHHHHHHhhhccCCCC-cEEEEEEEcCCCcE
Q 025897 187 PAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEF 227 (246)
Q Consensus 187 ~~~s~~ea~~l~~~~l~~~~~~d~~~~-~iei~ii~~~~~~~ 227 (246)
++||++||++++++||..+.++|+.++ +++|++|++++.+.
T Consensus 164 ~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~ 205 (213)
T 1iru_M 164 VPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGIRE 205 (213)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHBTTSCSEEEEEEEETTEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCccCCcEEEEEEcCCCeEE
Confidence 899999999999999999999998766 79999999998533
No 34
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=100.00 E-value=2.2e-44 Score=297.99 Aligned_cols=193 Identities=15% Similarity=0.178 Sum_probs=178.1
Q ss_pred HHHHhccCceEEEEEcCCeEEEEEeccCC-cCccccCCceeeEEecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCC
Q 025897 29 FKAVKAAGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGY 107 (246)
Q Consensus 29 ~~av~~~G~t~vgi~~~dgvvla~d~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 107 (246)
.++++ +|+|+|||+++||||||+|++.+ +.++..++.+||++|++|++++++|+.+|++.|.++++.+++.|++++++
T Consensus 3 ~~av~-~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~ 81 (205)
T 1ryp_H 3 KGEVS-LGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGT 81 (205)
T ss_dssp TTCCB-CCCCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCc-CCceEEEEEeCCEEEEEEcCCcccCcEEEcCCcCceEEcCCCEEEEccCCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 46787 59999999999999999999998 45777888899999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCcceeeceEEeecCChHHHHHHHHhhccCCC
Q 025897 108 EMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDP 187 (246)
Q Consensus 108 ~~~~~~la~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~a~~~Le~~~~~~~ 187 (246)
++++.+++.+++.++.|++ + |++++||+|||+++||+||.+||+|++.+++++|+|+|+++++++||+.| ++
T Consensus 82 -~~v~~la~~l~~~~~~~~~----~-~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~--~~ 153 (205)
T 1ryp_H 82 -PSTETAASVFKELCYENKD----N-LTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNF--RE 153 (205)
T ss_dssp -CCHHHHHHHHHHHHHHTTT----T-CCEEEEEEEEETTTEEEEEEECTTSCCEEESEEEESGGGGGGHHHHHHHC--CT
T ss_pred -CCHHHHHHHHHHHHHhhhc----C-ceEEEEEEEEecCCCcEEEEECCCccEEecCEEEEEecHHHHHHHHHhcc--CC
Confidence 9999999999999988754 2 99999999999767899999999999999999999999999999999998 67
Q ss_pred CCCHHHHHHHHHHHHHHhhhccCCCC-cEEEEEEEcCCCcEEEc
Q 025897 188 AFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVL 230 (246)
Q Consensus 188 ~~s~~ea~~l~~~~l~~~~~~d~~~~-~iei~ii~~~~~~~~~l 230 (246)
+||++||++++++||..+.++|+.++ +++|++|++++...+.+
T Consensus 154 ~~s~eea~~l~~~al~~a~~~d~~sg~~i~v~vi~~~g~~~~~~ 197 (205)
T 1ryp_H 154 NMSKEETVDFIKHSLSQAIKWDGSSGGVIRMVVLTAAGVERLIF 197 (205)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCccCCeEEEEEEcCCCEEEEEe
Confidence 99999999999999999999998765 89999999998643344
No 35
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=100.00 E-value=1.8e-45 Score=315.72 Aligned_cols=208 Identities=14% Similarity=0.214 Sum_probs=190.6
Q ss_pred hccHHHHHhccCceEEEEEcCCeEEEEEeccCC-cCccccCCceeeEEecCeEEEEEecchHHHHHHHHHHHHHHHHHHH
Q 025897 25 VEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRF 103 (246)
Q Consensus 25 ~eya~~av~~~G~t~vgi~~~dgvvla~d~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~ 103 (246)
.+-++++++ +|+|+|||+++||||||+|++.+ +.++.+++.+||++|+++++|+++|+.+|++.|.+.++.+++.|++
T Consensus 31 ~~~~~~av~-~GtT~vgi~~~dgVVlAaD~r~t~g~~i~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~ 109 (266)
T 1g0u_M 31 MVNTQQPIV-TGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAY 109 (266)
T ss_dssp ---CCCCCE-EECCEEEEEETTEEEEEEECCEEETTEEEECCCCCEEECTTSEEEEEEEEHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhccCcc-cCceEEEEEECCEEEEEEcCCcccCceeecCCcCcEEEcCCCEEEEeccCHHHHHHHHHHHHHHHHHhhh
Confidence 456678898 59999999999999999999998 6788888999999999999999999999999999999999999998
Q ss_pred -----HhCCCCCHHHHHHHHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCcceeeceEEeecCChHHHHHH
Q 025897 104 -----KYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINF 178 (246)
Q Consensus 104 -----~~~~~~~~~~la~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~a~~~ 178 (246)
+++++++++.+++.+++.+ |+++.+.|||++++||+|||+++||+||.+||+|++.+++++|+|+++++++++
T Consensus 110 ~~~~~~~~~~~~v~~la~~l~~~l--y~~r~~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~ 187 (266)
T 1g0u_M 110 DNPLADAEEALEPSYIFEYLATVM--YQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPL 187 (266)
T ss_dssp TCTTTTTTTSCCHHHHHHHHHHHH--HHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHTHHHH
T ss_pred ccchhhcCCCCCHHHHHHHHHHHH--HHhccCCCCceEEEEEEEEcCCCCEEEEEECCCCCEEeCCEEEEccCHHHHHHH
Confidence 8999999999999999998 666667899999999999997569999999999999999999999999999999
Q ss_pred HHhhccCCC-----CCCHHHHHHHHHHHHHHhhhccCCCC-cEEEEEEEcCCCcEEEcCHHHHHHH
Q 025897 179 LEKKMKNDP-----AFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLSIEEIDEH 238 (246)
Q Consensus 179 Le~~~~~~~-----~~s~~ea~~l~~~~l~~~~~~d~~~~-~iei~ii~~~~~~~~~l~~~eI~~~ 238 (246)
||+.| ++ +||++||++++++||..+.++|+.++ +++|++|+++++ ++.++++||+++
T Consensus 188 Le~~~--~~~~~~~~ms~eeA~~la~~al~~a~~rd~~sg~~i~v~vI~k~~g-~~~~~~~ei~~~ 250 (266)
T 1g0u_M 188 LRKVV--DRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTG-LTFKKNLQVENM 250 (266)
T ss_dssp HTTTC--SSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTE-EEEEEEEECCCC
T ss_pred HHHhh--cccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEECCCC-eEEcCHHHhhhh
Confidence 99998 45 89999999999999999999998766 799999999833 999998888766
No 36
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=100.00 E-value=1.1e-43 Score=292.26 Aligned_cols=190 Identities=16% Similarity=0.196 Sum_probs=174.8
Q ss_pred ceEEEEEcCCeEEEEEeccCC-cCccccCCceeeEEecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 025897 37 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 115 (246)
Q Consensus 37 ~t~vgi~~~dgvvla~d~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 115 (246)
+|+|||+++||||||+|++.+ +.++.+++.+||++|++|++++++|+.+|++.|.++++.+++.|+++++++++++.++
T Consensus 2 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 81 (198)
T 1ryp_K 2 DIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAVS 81 (198)
T ss_dssp CCEEEEECSSCEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred ceEEEEEECCEEEEEECCCcccCCEEEecCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 699999999999999999998 5555567889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCccceeEEEEEcC-CCCcEEEEECCCcceeeceEEeecCChHHHHHHHHhhccCCCCCCHHHH
Q 025897 116 KWIADKSQVYTQHAYMRPLGVVAMVLSIDE-ECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQET 194 (246)
Q Consensus 116 ~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~-~~gp~Ly~id~~G~~~~~~~~a~G~g~~~a~~~Le~~~~~~~~~s~~ea 194 (246)
+.+++.++.|++. .+||++++||+|||+ ++||+||.+||+|++.+++++|+|+++++++++||+.| +++||++||
T Consensus 82 ~~l~~~l~~~~~~--r~p~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~--~~~~s~eea 157 (198)
T 1ryp_K 82 SFVRQELAKSIRS--RRPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHY--RPDMTTEEG 157 (198)
T ss_dssp HHHHHHHHHHTTS--SSCCCEEEEEEEEETTTTEEEEEEECTTCCEEECSEEECTTHHHHHHHHHHHHC--CTTCCHHHH
T ss_pred HHHHHHHHHhccc--CCCceEEEEEEEEeCCCCCcEEEEECCCCCEEECCEEEEcccHHHHHHHHHhhc--CCCCCHHHH
Confidence 9999999877532 249999999999996 47999999999999999999999999999999999998 579999999
Q ss_pred HHHHHHHHHHhhhccCCCC-cEEEEEEEcCCCcEEEcCH
Q 025897 195 VQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLSI 232 (246)
Q Consensus 195 ~~l~~~~l~~~~~~d~~~~-~iei~ii~~~~~~~~~l~~ 232 (246)
++++++||..+.++|..++ +++|++|++++ ++.+++
T Consensus 158 ~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g--~~~~~~ 194 (198)
T 1ryp_K 158 LDLLKLCVQELEKRMPMDFKGVIVKIVDKDG--IRQVDD 194 (198)
T ss_dssp HHHHHHHHHHHHHHCSBCCCCEEEEEEETTE--EEEECC
T ss_pred HHHHHHHHHHHHHhCccCCCceEEEEEcCCC--EEEecc
Confidence 9999999999999997655 89999999986 777664
No 37
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=100.00 E-value=2.1e-44 Score=296.70 Aligned_cols=195 Identities=16% Similarity=0.194 Sum_probs=180.0
Q ss_pred ceEEEEEcCCeEEEEEeccCC-cCccccCCceeeEEecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 025897 37 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 115 (246)
Q Consensus 37 ~t~vgi~~~dgvvla~d~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 115 (246)
||+|||+++||||||+|++.+ +.++.+++.+||++|++|++++++|+.+|++.|.++++.+++.|+++++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (199)
T 3unf_N 1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAA 80 (199)
T ss_dssp CEEEEEECSSCEEEEECCCEEETTEEEESSCCCEEEEETTEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred CeEEEEEeCCeEEEEECCcccCCceeEccccCceEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 699999999999999999998 5588888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCcceeece-EEeecCChHHHHHHHHhhccCCCCCCHHHH
Q 025897 116 KWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHK-ATSAGLKEQEAINFLEKKMKNDPAFTFQET 194 (246)
Q Consensus 116 ~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~-~~a~G~g~~~a~~~Le~~~~~~~~~s~~ea 194 (246)
+++++.++.+ .|||++++||+|||+++||+||. |+|++.++. ++++|+++++++++||+.| +++||++||
T Consensus 81 ~~l~~~l~~~-----~~p~~v~~lvaG~D~~~~p~ly~--p~G~~~~~~~~~~~Gsgs~~a~~~Le~~~--~~~ms~eea 151 (199)
T 3unf_N 81 NVVKNISYKY-----REDLLAHLIVAGWDQREGGQVYG--TMGGMLIRQPFTIGGSGSSYIYGYVDAAY--KPGMTPEEC 151 (199)
T ss_dssp HHHHHHHHHT-----TTTCCCCEEEEEEETTTEEEEEE--CGGGCCEECSEEEEEGGGGGGHHHHHHHC--CSSCCHHHH
T ss_pred HHHHHHHHhc-----CCCceEEEEEEEEeCCCCcEEEE--ECCCceecCCEEEEccCHHHHHHHHHhhc--CCCCCHHHH
Confidence 9999998643 46999999999999867899999 999986664 5567999999999999998 689999999
Q ss_pred HHHHHHHHHHhhhccCCCC-cEEEEEEEcCCCcEEEcCHHHHHHHHH
Q 025897 195 VQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLSIEEIDEHLT 240 (246)
Q Consensus 195 ~~l~~~~l~~~~~~d~~~~-~iei~ii~~~~~~~~~l~~~eI~~~l~ 240 (246)
++++++||..+.++|+.++ +++|++|++++..|+.++++||+++++
T Consensus 152 ~~la~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~l~~~ei~~~~~ 198 (199)
T 3unf_N 152 RRFTTNAITLAMNRDGSSGGVIYLVTITAAGVDHRVILGDELPKFYD 198 (199)
T ss_dssp HHHHHHHHHHHHHHCTTCCSCEEEEEECSSCEEEEEECGGGSCCCCC
T ss_pred HHHHHHHHHHHHHhccccCCCeEEEEEcCCCEEEEEcCcccCccccc
Confidence 9999999999999998775 799999999987899999999987754
No 38
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=100.00 E-value=3.1e-43 Score=300.51 Aligned_cols=191 Identities=18% Similarity=0.217 Sum_probs=172.7
Q ss_pred HHHHhccCceEEEEEcCCeEEEEEeccCC-cCccccCCceeeEEecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCC
Q 025897 29 FKAVKAAGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGY 107 (246)
Q Consensus 29 ~~av~~~G~t~vgi~~~dgvvla~d~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 107 (246)
.|+++ +|+|+|||+++||||||+|++.+ +.++..++.+||++|++|++|+++|+.+|++.|.+.++.+++.|++++++
T Consensus 23 ~kav~-~GtTivgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~ 101 (261)
T 3nzj_H 23 PKATS-TGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSR 101 (261)
T ss_dssp --------CCEEEEEETTEEEEEEECCEEETTEEEETTCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred Ccccc-cCceEEEEEECCEEEEEEcCCcccCCeeccCCcceEEEEcCCEEEEeccCHHHHHHHHHHHHHHHHHhHHhhCC
Confidence 58898 59999999999999999999998 67778889999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCcceeeceEEeecCChHHHHHHHHhhccCCC
Q 025897 108 EMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDP 187 (246)
Q Consensus 108 ~~~~~~la~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~a~~~Le~~~~~~~ 187 (246)
+++++.+++++++.++.| .+||++++||+|||+ +||+||.+||+|++.+++++|+|+|++.++++||+.| ++
T Consensus 102 ~~~v~~~a~~l~~~l~~~-----~~~~gv~llvaG~D~-~Gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~--~~ 173 (261)
T 3nzj_H 102 EPRVVSALQMLKQHLFKY-----QGHIGAYLIVAGVDP-TGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHW--KQ 173 (261)
T ss_dssp CCCHHHHHHHHHHHHHHT-----TTCSCEEEEEEEEET-TEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHC--CS
T ss_pred CCCHHHHHHHHHHHHHHh-----cCcccEEEEEEEEeC-CCCEEEEECCCccEEecCeEEeccchHHHHHHHHHHh--cc
Confidence 999999999999988543 369999999999997 7899999999999999999999999999999999998 68
Q ss_pred CCCHHHHHHHHHHHHHHhhhccCCCC-cEEEEEEEcCCCcEEE
Q 025897 188 AFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRV 229 (246)
Q Consensus 188 ~~s~~ea~~l~~~~l~~~~~~d~~~~-~iei~ii~~~~~~~~~ 229 (246)
+||+|||++++++||..+..+|+.++ +++|++|+++++ ++.
T Consensus 174 ~ms~eEA~~la~~al~~a~~rD~~sg~~iev~vI~kdg~-~~~ 215 (261)
T 3nzj_H 174 DLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKD-AEY 215 (261)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEEETTSC-EEE
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCCcEEEEEEECCCc-EEE
Confidence 99999999999999999999998766 899999999985 544
No 39
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=100.00 E-value=1.3e-43 Score=298.74 Aligned_cols=191 Identities=16% Similarity=0.270 Sum_probs=177.0
Q ss_pred ceEEEEEcCCeEEEEEeccCCcC-ccccCCceeeEEecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 025897 37 VTSIGVRGKDSVCVVTQKKVPDK-LLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 115 (246)
Q Consensus 37 ~t~vgi~~~dgvvla~d~~~~~~-l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 115 (246)
+|+|||+++||||||+|+|.+.+ ++..++.+||++|++|++|+++|+.+|++.+.+.++.+++.|+++++++++++.++
T Consensus 1 TT~vgi~~kdgVVlaaD~r~t~g~~v~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 3unf_H 1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVT 80 (234)
T ss_dssp CEEEEEECSSEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEECCCcccCCEeccCccccEEEecCCEEEEecccHHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Confidence 68999999999999999999844 45567889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCcceeeceEEeecCChHHHHHHHHhhccCCCCCCHHHHH
Q 025897 116 KWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETV 195 (246)
Q Consensus 116 ~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~a~~~Le~~~~~~~~~s~~ea~ 195 (246)
+.+++.++.| .+||++++||+|||+ +||+||.+||+|++.+++++|+|+|+++++++||+.| +++||++||+
T Consensus 81 ~~l~~~l~~~-----~~p~~v~llvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~--~~~ms~eeA~ 152 (234)
T 3unf_H 81 RILRQTLFRY-----QGHVGASLVVGGVDL-NGPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDRF--QPNMTLEAAQ 152 (234)
T ss_dssp HHHHHHHHHT-----TTCSCEEEEEEEEET-TEEEEEEECTTSCEEECSEEEEETTHHHHHHHHHHHC--CSSCCHHHHH
T ss_pred HHHHHHHHhc-----CCCccEEEEEEEEeC-CCCEEEEECCCCCEEeccEEEEcCCchhhHHHHHhcc--CCCCCHHHHH
Confidence 9999998654 359999999999997 7999999999999999999999999999999999998 6899999999
Q ss_pred HHHHHHHHHhhhccCCCC-cEEEEEEEcCCCcEEEcCHHHHHH
Q 025897 196 QTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLSIEEIDE 237 (246)
Q Consensus 196 ~l~~~~l~~~~~~d~~~~-~iei~ii~~~~~~~~~l~~~eI~~ 237 (246)
+++++||..+..+|+.++ +++|++|++++ ++.+++.+|+.
T Consensus 153 ~la~~al~~~~~~D~~sg~~iev~vi~~dg--~~~l~~~~i~~ 193 (234)
T 3unf_H 153 ELLVEAITAGILSDLGSGGNVDACVITAGG--AKLQRALSTPT 193 (234)
T ss_dssp HHHHHHHHHHHHHBTTCCSCEEEEEEESSC--EEEEEEEECCC
T ss_pred HHHHHHHHHHHhhcCCCCCcEEEEEEECCC--EEEeCceeccc
Confidence 999999999999998666 89999999996 88888777653
No 40
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=100.00 E-value=4.9e-43 Score=293.26 Aligned_cols=189 Identities=16% Similarity=0.304 Sum_probs=173.9
Q ss_pred cCceEEEEEcCCeEEEEEeccCCc-CccccCCceeeEEecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhC-CCCCHH
Q 025897 35 AGVTSIGVRGKDSVCVVTQKKVPD-KLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYG-YEMPVD 112 (246)
Q Consensus 35 ~G~t~vgi~~~dgvvla~d~~~~~-~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~-~~~~~~ 112 (246)
+|+|+|||+++||||||+|++.+. .++..++.+||++|+++++++++|+.+|++.|.+.++.+++.|+++++ ++++++
T Consensus 8 ~Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~v~ 87 (222)
T 1ryp_M 8 NGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHNDKKLSIN 87 (222)
T ss_dssp CCCEEEEEECSSCEEEEEECCEEETTEEEESCCCCCEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHTTTCCCCHH
T ss_pred CCccEEEEEeCCEEEEEEecccccCCEecCCCcCcEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCCHH
Confidence 599999999999999999999984 445677899999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCcceeeceEEeecCChHHHHHHHHhhcc--------
Q 025897 113 VLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMK-------- 184 (246)
Q Consensus 113 ~la~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~a~~~Le~~~~-------- 184 (246)
.+++.+++.+ |++ +.+||++++||+|||++++|+||.+||.|++.+++++|+|+++++++++||+.++
T Consensus 88 ~la~~l~~~l--y~~--r~~P~~v~~ivaG~D~~g~p~Ly~~dp~G~~~~~~~~a~Gsg~~~a~~~Le~~~~~~~~~~~~ 163 (222)
T 1ryp_M 88 SAARNIQHLL--YGK--RFFPYYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQYEPG 163 (222)
T ss_dssp HHHHHHHHHH--HTT--TTSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTSCTTCBCTT
T ss_pred HHHHHHHHHH--Hhc--CCCCceEEEEEEEEcCCCCeEEEEECCCcCEEecCEEEEcCcHHHHHHHHhcccccccccccc
Confidence 9999999998 543 3679999999999997566999999999999999999999999999999999853
Q ss_pred -------CCCCCCHHHHHHHHHHHHHHhhhccCCCC-cEEEEEEEcCCCcE
Q 025897 185 -------NDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEF 227 (246)
Q Consensus 185 -------~~~~~s~~ea~~l~~~~l~~~~~~d~~~~-~iei~ii~~~~~~~ 227 (246)
++++||++||++++++||..+.++|+.++ +++|++|++++.+.
T Consensus 164 ~~~~~~~~~~~~s~eeA~~la~~al~~a~~rd~~sg~~i~v~vi~~~g~~~ 214 (222)
T 1ryp_M 164 TNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIVTKDGVRK 214 (222)
T ss_dssp STTCSBCCCCCCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEE
T ss_pred cccccccCCCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEcCCCeEE
Confidence 36899999999999999999999998766 79999999998533
No 41
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=100.00 E-value=6.3e-43 Score=289.17 Aligned_cols=191 Identities=16% Similarity=0.279 Sum_probs=173.9
Q ss_pred cCceEEEEEcCCeEEEEEeccCCcCcc-ccCCceeeEEecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Q 025897 35 AGVTSIGVRGKDSVCVVTQKKVPDKLL-DHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDV 113 (246)
Q Consensus 35 ~G~t~vgi~~~dgvvla~d~~~~~~l~-~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 113 (246)
+|+|+|||+++||||||+|++.+.+++ ..++.+||++|++|++++++|+.+|++.|.++++.+++.|+++++++++++.
T Consensus 7 ~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~ 86 (205)
T 1iru_J 7 NGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPYT 86 (205)
T ss_dssp SCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHHHHHHHSSSCCCHHH
T ss_pred CCCeEEEEEeCCEEEEEECCccccCCeEeecCCccEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHhhcCCCCCHHH
Confidence 599999999999999999999985544 4458899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCccceeEEEEEcC-CCCcEEEEECCCcceeec-eEEeecCChHHHHHHHHhhccCCCCCCH
Q 025897 114 LAKWIADKSQVYTQHAYMRPLGVVAMVLSIDE-ECGPRLFKCDPAGHFFGH-KATSAGLKEQEAINFLEKKMKNDPAFTF 191 (246)
Q Consensus 114 la~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~-~~gp~Ly~id~~G~~~~~-~~~a~G~g~~~a~~~Le~~~~~~~~~s~ 191 (246)
+++.+++.+ |+++ ..||++++||+|||+ ++||+||.+||+|++.++ .++|+|+|+++++++||+.| +++||+
T Consensus 87 la~~l~~~~--y~~r--~~P~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~--~~~~s~ 160 (205)
T 1iru_J 87 LMSMVANLL--YEKR--FGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLW--EPNMDP 160 (205)
T ss_dssp HHHHHHHHH--HTTT--TSCCSCCCEEEEECTTSCCEEEEEECTTCCEEECSSEEEEETTHHHHHHHHHHHC--CSSCCH
T ss_pred HHHHHHHHH--HHhc--CCCceEEEEEEEEeCCCCCeEEEEECCCCCccccCCeeEeeeCHHHHHHHHhccc--CCCCCH
Confidence 999999999 7765 349999999999995 478999999999999666 66999999999999999998 679999
Q ss_pred HHHHHHHHHHHHHhhhccCCCC-cEEEEEEEcCCCcEEEcC
Q 025897 192 QETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLS 231 (246)
Q Consensus 192 ~ea~~l~~~~l~~~~~~d~~~~-~iei~ii~~~~~~~~~l~ 231 (246)
+||++++++||..+.++|+.++ +++|++|++++.+++.+.
T Consensus 161 eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~~~ 201 (205)
T 1iru_J 161 DHLFETISQAMLNAVDRDAVSGMGVIVHIIEKDKITTRTLK 201 (205)
T ss_dssp HHHHHHHHHHHHHHGGGBTTSCSCEEEEEEESSBEEEEEBC
T ss_pred HHHHHHHHHHHHHHHHhCcccCCceEEEEEcCCCEEEEEee
Confidence 9999999999999999998766 899999999986555553
No 42
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=100.00 E-value=7.2e-43 Score=288.00 Aligned_cols=189 Identities=16% Similarity=0.261 Sum_probs=173.3
Q ss_pred ceEEEEEcCCeEEEEEeccCC-cCccccCCceeeEEecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 025897 37 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 115 (246)
Q Consensus 37 ~t~vgi~~~dgvvla~d~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 115 (246)
+|+|||+++||||||+|++.+ ++++.+++.+||++|++|++++++|+.+|++.|.++++.+++.|+++++++++++.++
T Consensus 2 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 81 (201)
T 1iru_K 2 EYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAA 81 (201)
T ss_dssp CCEEEEECSSEEEEEEECCEEETTEEEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEccCcceEEEecCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 699999999999999999998 5788888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCcceeeceEEeecCChHHHHHHHHhhccCCCCCCHHHHH
Q 025897 116 KWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETV 195 (246)
Q Consensus 116 ~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~a~~~Le~~~~~~~~~s~~ea~ 195 (246)
+++++.+..+ .+ ..|||++++||+|||+++||+||.+||+|++.+++++|+|+++++++++||+.| +++||++||+
T Consensus 82 ~~~~~~l~~~-~~-~~~p~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~--~~~~s~eea~ 157 (201)
T 1iru_K 82 NFTRRNLADC-LR-SRTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYY--TPTISRERAV 157 (201)
T ss_dssp HHHHHHHHHH-HT-SSSCCCEEEEEEEEETTTEEEEEEECTTCCEEECSEEEESHHHHHHHHHHHHHC--CTTCCHHHHH
T ss_pred HHHHHHHHHH-Hh-cCCCccEEEEEEEEeCCCCeEEEEECCCcCeEECCEEEECCcHHHHHHHHHhcc--cCCCCHHHHH
Confidence 9998766322 12 237999999999999767899999999999999999999999999999999998 6799999999
Q ss_pred HHHHHHHHHhhhccCCCC-cEEEEEEEcCCCcEEEcC
Q 025897 196 QTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLS 231 (246)
Q Consensus 196 ~l~~~~l~~~~~~d~~~~-~iei~ii~~~~~~~~~l~ 231 (246)
+++++||..+.++|+.++ +++|++|++++ ++.++
T Consensus 158 ~l~~~al~~a~~rd~~sg~~i~v~vi~~~g--~~~~~ 192 (201)
T 1iru_K 158 ELLRKCLEELQKRFILNLPTFSVRIIDKNG--IHDLD 192 (201)
T ss_dssp HHHHHHHHHHHHTBCBCCCCEEEEEEETTE--EECCC
T ss_pred HHHHHHHHHHHhhccccCCceEEEEEcCCC--eEEee
Confidence 999999999999998766 79999999987 66554
No 43
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=100.00 E-value=1.6e-42 Score=286.52 Aligned_cols=191 Identities=18% Similarity=0.240 Sum_probs=173.2
Q ss_pred ccCceEEEEEcCCeEEEEEeccCCcCccc-cCCceeeEEecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Q 025897 34 AAGVTSIGVRGKDSVCVVTQKKVPDKLLD-HTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVD 112 (246)
Q Consensus 34 ~~G~t~vgi~~~dgvvla~d~~~~~~l~~-~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~ 112 (246)
.+|+|+|||+++||||||+|++.+..++. .++.+||++|+ |++++++|+.+|++.|.++++.+++.|+++++++++++
T Consensus 6 ~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~ 84 (204)
T 1ryp_J 6 INGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEMFRYKTNLYKLKEERAIEPE 84 (204)
T ss_dssp SSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEET-TEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHH
T ss_pred CCCCeEEEEEeCCEEEEEEcCCcccCCEEeeCCcceEEEeC-CEEEEeeEcHHHHHHHHHHHHHHHHHHhhccCCCCCHH
Confidence 36999999999999999999999955544 45889999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCccceeEEEEEcC-CCCcEEEEECCCcceeec-eEEeecCChHHHHHHHHhhccCCCCCC
Q 025897 113 VLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDE-ECGPRLFKCDPAGHFFGH-KATSAGLKEQEAINFLEKKMKNDPAFT 190 (246)
Q Consensus 113 ~la~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~-~~gp~Ly~id~~G~~~~~-~~~a~G~g~~~a~~~Le~~~~~~~~~s 190 (246)
.+++.+++.+ |+++.+ ||++++||+|||+ ++||+||.+||+|++.++ .++|+|+|+++++++||+.| +++||
T Consensus 85 ~la~~l~~~~--y~~~~~--P~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~--~~~~s 158 (204)
T 1ryp_J 85 TFTQLVSSSL--YERRFG--PYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLY--EPNLE 158 (204)
T ss_dssp HHHHHHHHHH--HTTTTS--CCCEEEEEEEECTTTCCEEEEEECTTCCEECCSSEEEEETTHHHHHHHHHHHC--CSSCC
T ss_pred HHHHHHHHHH--HHhcCC--CceEEEEEEEEeCCCCceEEEEECCCCCccccCceeEeccCHHHHHHHHhhhc--CCCcC
Confidence 9999999999 776543 9999999999996 478999999999999666 67999999999999999998 67999
Q ss_pred HHHHHHHHHHHHHHhhhccCCCC-cEEEEEEEcCCCcEEEcC
Q 025897 191 FQETVQTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLS 231 (246)
Q Consensus 191 ~~ea~~l~~~~l~~~~~~d~~~~-~iei~ii~~~~~~~~~l~ 231 (246)
++||++++++||..+.++|+.++ +++|++|++++.+++.+.
T Consensus 159 ~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~~~ 200 (204)
T 1ryp_J 159 PEDLFETISQALLNAADRDALSGWGAVVYIIKKDEVVKRYLK 200 (204)
T ss_dssp HHHHHHHHHHHHHHHHTTBTTSCSCEEEEEEESSCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHhCcccCCcEEEEEEcCCCEEEEEee
Confidence 99999999999999999997665 899999999986555543
No 44
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=100.00 E-value=4e-42 Score=287.74 Aligned_cols=185 Identities=18% Similarity=0.215 Sum_probs=171.5
Q ss_pred ceEEEEEcCCeEEEEEeccCC-cCccccCCceeeEEecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 025897 37 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 115 (246)
Q Consensus 37 ~t~vgi~~~dgvvla~d~~~~-~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 115 (246)
+|+|||+++||||||+|++.+ +.++..++.+||++|++|++++++|+.+|++.|.++++.+++.|+++++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~t~g~~~~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (222)
T 1ryp_I 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSAL 80 (222)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEEcCCcccCCeeecCCcccEEEecCCEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 589999999999999999998 4556667889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCcceeeceEEeecCChHHHHHHHHhhccCCCCCCHHHHH
Q 025897 116 KWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETV 195 (246)
Q Consensus 116 ~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~a~~~Le~~~~~~~~~s~~ea~ 195 (246)
+.+++.++.| .|||++++||+|||+ +||+||.+||+|++.+++++|+|+|+++++++||+.| +++||++||+
T Consensus 81 ~~l~~~l~~~-----~~p~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~--~~~ms~eeA~ 152 (222)
T 1ryp_I 81 QMLKQHLFKY-----QGHIGAYLIVAGVDP-TGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHW--KQDLTKEEAI 152 (222)
T ss_dssp HHHHHHHHHT-----TTCSCEEEEEEEEET-TEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHC--CSSCCHHHHH
T ss_pred HHHHHHHhhc-----CCCCCeeEEEEEEeC-CCCEEEEECCCCCEEecCEEEECCCHHHHHHHHHhhC--CCCcCHHHHH
Confidence 9999998644 479999999999997 7899999999999999999999999999999999998 6799999999
Q ss_pred HHHHHHHHHhhhccCCCC-cEEEEEEEcCCCcEEEc
Q 025897 196 QTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVL 230 (246)
Q Consensus 196 ~l~~~~l~~~~~~d~~~~-~iei~ii~~~~~~~~~l 230 (246)
+++++||..++++|+.++ +++|++|+++++ ++.+
T Consensus 153 ~la~~al~~~~~~d~~sg~~i~v~vi~~~g~-~~~~ 187 (222)
T 1ryp_I 153 KLASDAIQAGIWNDLGSGSNVDVCVMEIGKD-AEYL 187 (222)
T ss_dssp HHHHHHHHHHHHHCTTCCSCEEEEEEETTSC-EEEE
T ss_pred HHHHHHHHHHHhccccCCCcEEEEEEECCCC-EEEE
Confidence 999999999999998766 799999999983 5544
No 45
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=100.00 E-value=3.3e-41 Score=284.20 Aligned_cols=186 Identities=17% Similarity=0.220 Sum_probs=171.2
Q ss_pred ceEEEEEcCCeEEEEEeccCCcC-ccccCCceeeEEecCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 025897 37 VTSIGVRGKDSVCVVTQKKVPDK-LLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 115 (246)
Q Consensus 37 ~t~vgi~~~dgvvla~d~~~~~~-l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 115 (246)
+|+|||+++||||||+|+|.+.+ ++..++.+||++|++|++|+++|+.+|++.|.++++.+++.|+++++++++++.++
T Consensus 1 TTivgi~~~dgVVlaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 1iru_I 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTAN 80 (234)
T ss_dssp CCEEEEEETTEEEEEECCCEESSSBEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCceeccCcccceEEecCCEEEEecCcHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 58999999999999999999854 44556889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCcceeeceEEeecCChHHHHHHHHhhccCCCCCCHHHHH
Q 025897 116 KWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETV 195 (246)
Q Consensus 116 ~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~a~~~Le~~~~~~~~~s~~ea~ 195 (246)
+.+++.++.| .+||++++||||||+ +||+||.+||+|++.+++++|+|+|++.++++||+.| +++||++||+
T Consensus 81 ~~l~~~l~~~-----~~~~~v~llvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~--~~~ms~eeA~ 152 (234)
T 1iru_I 81 RMLKQMLFRY-----RGYIGAALVLGGVDV-TGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKF--RPDMEEEEAK 152 (234)
T ss_dssp HHHHHHHHHT-----TTCSCEEEEEEEECS-SCEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHSC--CTTCCHHHHH
T ss_pred HHHHHHHHhc-----CCCCceeEEEEEEcC-CCCEEEEECCCCCEEecCEEEECCchHHHHHHHHHhc--cCCCCHHHHH
Confidence 9999988654 359999999999997 7899999999999999999999999999999999998 6799999999
Q ss_pred HHHHHHHHHhhhccCCCC-cEEEEEEEcCCCcEEEcCH
Q 025897 196 QTAISTLQSVLQEDFKAS-EIEVGVVSKENPEFRVLSI 232 (246)
Q Consensus 196 ~l~~~~l~~~~~~d~~~~-~iei~ii~~~~~~~~~l~~ 232 (246)
+++++||..+..+|+.++ +++|++|++++ ++.+.+
T Consensus 153 ~la~~al~~a~~~d~~sg~~i~v~vi~k~g--~~~~~~ 188 (234)
T 1iru_I 153 NLVSEAIAAGIFNDLGSGSNIDLCVISKNK--LDFLRP 188 (234)
T ss_dssp THHHHHHHHHHHHCTTCCSCEEEEEEETTE--EECCSE
T ss_pred HHHHHHHHHHHHhcccCCCCEEEEEEECCc--EEEEcc
Confidence 999999999999998765 89999999986 665543
No 46
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=100.00 E-value=3.4e-35 Score=238.10 Aligned_cols=167 Identities=15% Similarity=0.150 Sum_probs=147.3
Q ss_pred cCceEEEEEcCCeEEEEEeccCC-cCc-cccCCceeeEEe-cCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCH
Q 025897 35 AGVTSIGVRGKDSVCVVTQKKVP-DKL-LDHTSVTHLFPI-TKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPV 111 (246)
Q Consensus 35 ~G~t~vgi~~~dgvvla~d~~~~-~~l-~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 111 (246)
+|+|+|||+++||||||+|++.+ +.+ +.+++.+||++| ++|++++++|+.+|++.|.++++.+++.|+ + +
T Consensus 4 ~GtTivgi~~~dgVvlaaD~r~t~g~~~i~~~~~~KI~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~y~---g---~- 76 (180)
T 2z3b_A 4 HATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYN---G---N- 76 (180)
T ss_dssp CCCCEEEEEETTEEEEEECCCEEETTTEEEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHHHHHHTT---T---C-
T ss_pred CCeEEEEEEECCEEEEEECCCccCCCceEecCCCCcEEEECCCCEEEEeCchHHHHHHHHHHHHHHHHHhc---C---C-
Confidence 59999999999999999999998 577 888899999999 999999999999999999999999999887 3 2
Q ss_pred HHHHHHHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCcceee--ceEEeecCChHHHHHHHHhhccCCC--
Q 025897 112 DVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFG--HKATSAGLKEQEAINFLEKKMKNDP-- 187 (246)
Q Consensus 112 ~~la~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~--~~~~a~G~g~~~a~~~Le~~~~~~~-- 187 (246)
+.+.++++.+.+++....|||++++||+ | +|+||.+||+|++.+ ++++|+|+|+++|+++||+.|+ +
T Consensus 77 --~~~~~~~l~~~~~~~~~~rp~~~~~lva--d---~p~ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~--~~~ 147 (180)
T 2z3b_A 77 --LKRAAVELAKEWRSDKVLRKLEAMLIVM--N---QDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKK--HAG 147 (180)
T ss_dssp --HHHHHHHHHHHHHHCTTGGGCCCCEEEE--C---SSCEEEECTTCCEECCSSSEEEESTTHHHHHHHHHHHHH--HHG
T ss_pred --hHHHHHHHHHHHHhhhCcCcceEEEEEE--c---CCeEEEECCCCcEEEeCCCEEEECCCHHHHHHHHHHhhh--ccC
Confidence 3333344455566777789999999998 3 699999999999997 4999999999999999999984 4
Q ss_pred -CCCHHHHHHHHHHHHHHhhhccCCCC-cEEEEEE
Q 025897 188 -AFTFQETVQTAISTLQSVLQEDFKAS-EIEVGVV 220 (246)
Q Consensus 188 -~~s~~ea~~l~~~~l~~~~~~d~~~~-~iei~ii 220 (246)
+||.|| ++.+||+.+.++|+.++ +++|.+|
T Consensus 148 ~~mt~ee---l~~~al~~a~~rd~~sg~~i~v~~i 179 (180)
T 2z3b_A 148 ESMSASE---IARAALETAGEICVYTNDQIILEEL 179 (180)
T ss_dssp GGCCHHH---HHHHHHHHHHHHCTTCCSCCEEEEE
T ss_pred CCCCHHH---HHHHHHHHHHHhcCccCCeEEEEEE
Confidence 899999 46799999999999887 7999887
No 47
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=100.00 E-value=1.1e-34 Score=233.31 Aligned_cols=166 Identities=14% Similarity=0.114 Sum_probs=143.7
Q ss_pred ceEEEEEcCCeEEEEEeccCC-cCccccCCceeeEEe-cCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q 025897 37 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPI-TKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVL 114 (246)
Q Consensus 37 ~t~vgi~~~dgvvla~d~~~~-~~l~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 114 (246)
+|+|||+++||||||+|+|.+ +.++.+++.+||++| ++|++++++|+.+|++.|.++++.+++.|+.+ .++.+
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~-----~~~~~ 75 (171)
T 1m4y_A 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGN-----LTKAA 75 (171)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTC-----HHHHH
T ss_pred CeEEEEEECCEEEEEECCCcccCCEEEeCCcceEEEeCCCCEEEEeCccHHHHHHHHHHHHHHHHHhccc-----HHHHH
Confidence 589999999999999999998 678888899999999 99999999999999999999999999987743 14444
Q ss_pred HHHHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCcceeece--EEeecCChHHHHHHHHhhccCCCCCCHH
Q 025897 115 AKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHK--ATSAGLKEQEAINFLEKKMKNDPAFTFQ 192 (246)
Q Consensus 115 a~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~--~~a~G~g~~~a~~~Le~~~~~~~~~s~~ 192 (246)
++. .+.+++++..|||++++|++ | ||+||.+||+|++.+++ ++|+|+|+++++++||+.|++ ++||.
T Consensus 76 ~~l----~~~~~~~~~~~~~~~~~lv~--D---~p~Ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~-~~ms~- 144 (171)
T 1m4y_A 76 VEL----AKDWRTDRVLRRLEALLLVA--D---KENIFIISGNGEVIQPDDDAAAIGSGGPYALAAAKALLRN-TDLSA- 144 (171)
T ss_dssp HHH----HHHHHHCTTGGGCCCEEEEE--C---SSCEEEECTTSCEECCSSSEEEESTTHHHHHHHHHHHHHH-CCCCH-
T ss_pred HHH----HHHHHHhCCCCceEEEEEEE--c---CCEEEEECCCCCEEecCCCEEEECCcHHHHHHHHHHhccc-CCCCH-
Confidence 443 33455666678899998887 4 79999999999999987 999999999999999999841 78996
Q ss_pred HHHHHHHHHHHHhhhccCCCC-cEEEEEE
Q 025897 193 ETVQTAISTLQSVLQEDFKAS-EIEVGVV 220 (246)
Q Consensus 193 ea~~l~~~~l~~~~~~d~~~~-~iei~ii 220 (246)
++++++||+.+.++|+.++ +++|.++
T Consensus 145 --~~l~~~al~~a~~rd~~sg~~i~v~~~ 171 (171)
T 1m4y_A 145 --REIVEKAMTIAGEICIYTNQNIVIEEV 171 (171)
T ss_dssp --HHHHHHHHHHHHHHCTTCCSCCEEEEC
T ss_pred --HHHHHHHHHHHHHhCcccCCeEEEEEC
Confidence 6789999999999998776 7888753
No 48
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=100.00 E-value=1.8e-34 Score=232.61 Aligned_cols=167 Identities=14% Similarity=0.089 Sum_probs=144.9
Q ss_pred ceEEEEEcCCeEEEEEeccCC-cCccccCCceeeEEe-cCeEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q 025897 37 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPI-TKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVL 114 (246)
Q Consensus 37 ~t~vgi~~~dgvvla~d~~~~-~~l~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 114 (246)
+|+|||+++||||||+|++.+ +.++.+++.+||++| ++|++++++|+.+|++.|.++++.+++.|+. +.
T Consensus 1 tT~vgi~~~dgVvlaaD~r~t~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~------~~--- 71 (174)
T 1g3k_A 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQG------HL--- 71 (174)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTT------CH---
T ss_pred CeEEEEEECCEEEEEECCCCccCCeeEeCCCCcEEEECCCCEEEEeCccHHHHHHHHHHHHHHHHHhcC------cH---
Confidence 589999999999999999998 568888899999999 9999999999999999999999999998874 33
Q ss_pred HHHHHHHHHHHhhccCCCCccceeEEEEEcCCCCcEEEEECCCcceeece---EEeecCChHHHHHHHHhhccCCCCCCH
Q 025897 115 AKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHK---ATSAGLKEQEAINFLEKKMKNDPAFTF 191 (246)
Q Consensus 115 a~~l~~~~~~~~~~~~~rP~~v~~ll~G~d~~~gp~Ly~id~~G~~~~~~---~~a~G~g~~~a~~~Le~~~~~~~~~s~ 191 (246)
.+.++.+.+.+++++..||+ +++++|+| +|+||.+||+|++.+++ ++|+|+|+++|+++||+.|+ .++||.
T Consensus 72 ~~~~~~l~~~~~~~~~~r~~--~~~l~g~d---~p~Ly~~d~~G~~~~~~~~~~~a~Gsgs~~a~~~le~~~~-~~~mt~ 145 (174)
T 1g3k_A 72 LKSAVELAKDWRTDRALRKL--EAMLIVAD---EKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVE-NTELSA 145 (174)
T ss_dssp HHHHHHHHHHHHHSTTGGGC--CCEEEEEC---SSCEEEEETTTEEECCCTTCEEEESTTHHHHHHHHHHHHH-HCCCCH
T ss_pred HHHHHHHHHHHHhccCcCcc--eEEEEEEC---CCEEEEEcCCCcEEecCCCcEEEEcccHHHHHHHHHHhcc-cCCCCH
Confidence 34444455556676667775 57778887 69999999999999988 99999999999999999984 178995
Q ss_pred HHHHHHHHHHHHHhhhccCCCC-cEEEEEEE
Q 025897 192 QETVQTAISTLQSVLQEDFKAS-EIEVGVVS 221 (246)
Q Consensus 192 ~ea~~l~~~~l~~~~~~d~~~~-~iei~ii~ 221 (246)
+ +++++||+.+.++|+.++ +++|.+|+
T Consensus 146 ~---~l~~~al~~a~~rd~~sg~~i~v~~i~ 173 (174)
T 1g3k_A 146 H---EIVEKSLRIAGDICVFTNTNFTIEELP 173 (174)
T ss_dssp H---HHHHHHHHHHHHHCTTCCSCCEEEEEC
T ss_pred H---HHHHHHHHHHHHhccccCCceEEEEec
Confidence 5 799999999999998766 79999985
No 49
>1yo5_C SAM pointed domain containing ETS transcription factor; protein-DNA complex, double helix, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.4.5.21
Probab=58.86 E-value=15 Score=25.64 Aligned_cols=29 Identities=14% Similarity=0.208 Sum_probs=23.1
Q ss_pred EEEEEcCCCcEEEcCHHHHHHHHHHhhcc
Q 025897 217 VGVVSKENPEFRVLSIEEIDEHLTAISER 245 (246)
Q Consensus 217 i~ii~~~~~~~~~l~~~eI~~~l~~i~~~ 245 (246)
|.+++++.+.|+.+++++|...+..--.|
T Consensus 31 I~W~~~~~g~Fkl~d~~~VArlWG~rKnk 59 (97)
T 1yo5_C 31 IRWLNKEKGIFKIEDSAQVARLWGIRKNR 59 (97)
T ss_dssp EEEEETTTTEEEESCHHHHHHHHHHHHTC
T ss_pred eEeecCCCCEEEecCHHHHHHHHHhcCCC
Confidence 67888776679999999999998764433
No 50
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=54.63 E-value=35 Score=23.27 Aligned_cols=51 Identities=14% Similarity=0.165 Sum_probs=39.2
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEcCCCcEEEcCHHHHHHHHHH
Q 025897 186 DPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTA 241 (246)
Q Consensus 186 ~~~~s~~ea~~l~~~~l~~~~~~d~~~~~iei~ii~~~~~~~~~l~~~eI~~~l~~ 241 (246)
.++++.++..+.++..++. .....+.+.|++.+|..+...+.+|++..+.-
T Consensus 23 ~~~i~~~~L~~kv~~~~~~-----~~~~~f~lky~DEeGD~itisSd~EL~eAl~l 73 (89)
T 1vd2_A 23 EPSISFEGLCNEVRDMCSF-----DNEQLFTMKWIDEEGDPCTVSSQLELEEAFRL 73 (89)
T ss_dssp CTTCCHHHHHHHHHHHTTC-----CSSCCEEEEECCSSSCCEECCSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhCC-----CCCCeEEEEEECCCCCcccccCHHHHHHHHHH
Confidence 4678999998887665531 11235999999999877999999999988763
No 51
>2dao_A Transcription factor ETV6; ETS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.61 E-value=19 Score=26.03 Aligned_cols=29 Identities=17% Similarity=0.226 Sum_probs=23.8
Q ss_pred EEEEEcCCCcEEEcCHHHHHHHHHHhhcc
Q 025897 217 VGVVSKENPEFRVLSIEEIDEHLTAISER 245 (246)
Q Consensus 217 i~ii~~~~~~~~~l~~~eI~~~l~~i~~~ 245 (246)
|.+.+++++.|+.+++++|...+..--+|
T Consensus 28 I~W~~~~~g~Fklvdp~~VArlWG~rKnk 56 (118)
T 2dao_A 28 IRWEDKESKIFRIVDPNGLARLWGNHKNR 56 (118)
T ss_dssp EEEEEGGGTEEEESCHHHHHHHHHHHTTC
T ss_pred eEeeCCCCCeEEEeCHHHHHHHHHhccCC
Confidence 78889887679999999999998764443
No 52
>2hc5_A ORF 99, hypothetical protein YVYC; NESG, GFT-PSI, protein structure initiative, northeast structural genomics consortium, alpha-beta, FLAG; NMR {Bacillus subtilis} SCOP: d.352.1.1
Probab=50.37 E-value=34 Score=24.62 Aligned_cols=33 Identities=21% Similarity=0.266 Sum_probs=26.9
Q ss_pred CCcEEEEEEEcCCCc-EEEcCHHHHHHHHHHhhc
Q 025897 212 ASEIEVGVVSKENPE-FRVLSIEEIDEHLTAISE 244 (246)
Q Consensus 212 ~~~iei~ii~~~~~~-~~~l~~~eI~~~l~~i~~ 244 (246)
++.+-|.+++++.++ .|.++++++-++..++.+
T Consensus 66 ~~~~vVkVvD~~TgEVIRqIPpEe~L~l~~~l~e 99 (117)
T 2hc5_A 66 LNEYYVKVIEDSTNEVIREIPPKRWLDFYAAMTE 99 (117)
T ss_dssp TTEEEEEEEETTTTEEEEEECHHHHHHHHHHHHH
T ss_pred CCcEEEEEEECCCCcEEEeCChHHHHHHHHHHHH
Confidence 456899999998665 689999999888887754
No 53
>3jtg_A ETS-related transcription factor ELF-3; ELF3, protein-DNA complex, type II TGF-beta receptor, activa alternative splicing, cytoplasm; HET: DNA; 2.20A {Mus musculus} SCOP: a.4.5.21
Probab=45.71 E-value=31 Score=24.27 Aligned_cols=28 Identities=11% Similarity=0.152 Sum_probs=22.9
Q ss_pred EEEEEcCCCcEEEcCHHHHHHHHHHhhc
Q 025897 217 VGVVSKENPEFRVLSIEEIDEHLTAISE 244 (246)
Q Consensus 217 i~ii~~~~~~~~~l~~~eI~~~l~~i~~ 244 (246)
|.+++++.+.|+.+++++|...+..-..
T Consensus 25 I~W~~~~~g~Fkl~dp~~VArlWG~rKn 52 (103)
T 3jtg_A 25 MKWENRHEGVFKFLRSEAVAQLWGQKKK 52 (103)
T ss_dssp EEEEETTTTEEEESSHHHHHHHHHHHTT
T ss_pred cccccCCCceEEecCHHHHHHHHHhccC
Confidence 7888887667999999999999876433
No 54
>1wwx_A E74-like factor 5 ESE-2B; DNA binding, transcriptional activation and repression, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.21
Probab=40.90 E-value=27 Score=24.80 Aligned_cols=26 Identities=19% Similarity=0.213 Sum_probs=21.6
Q ss_pred EEEEEcCCCcEEEcCHHHHHHHHHHh
Q 025897 217 VGVVSKENPEFRVLSIEEIDEHLTAI 242 (246)
Q Consensus 217 i~ii~~~~~~~~~l~~~eI~~~l~~i 242 (246)
|.+++++.+.|+.+++++|...+..-
T Consensus 29 I~W~~~~~g~Fkl~d~e~VArlWG~r 54 (107)
T 1wwx_A 29 LEWEDREQGIFRVVKSEALAKMWGQR 54 (107)
T ss_dssp CEEEETTTTEEECSCHHHHHHHHHHH
T ss_pred EEeecCCCCEEEecCHHHHHHHHHhc
Confidence 67888776679999999999998754
No 55
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=32.86 E-value=23 Score=23.45 Aligned_cols=38 Identities=21% Similarity=0.435 Sum_probs=23.3
Q ss_pred CCcccceeCCCCccchhcc-------HHHHHhccCceEEEEEcCC
Q 025897 9 YDRHITIFSPEGRLFQVEY-------AFKAVKAAGVTSIGVRGKD 46 (246)
Q Consensus 9 yd~~~t~f~p~Gr~~Q~ey-------a~~av~~~G~t~vgi~~~d 46 (246)
|...+.+|+|+|.++.++- |..--..-|..++|.+-++
T Consensus 4 ~~~~i~v~tP~G~~~~lp~GaT~~D~A~~Ih~~lg~~~v~AkVNG 48 (78)
T 3hvz_A 4 APEEVFVFTPKGDVISLPIGSTVIDFAYAIHSAVGNRMIGAKVDG 48 (78)
T ss_dssp --CEEEEECTTSCEEEEETTCBHHHHHHHHCHHHHHTEEEEEETT
T ss_pred cCceEEEECCCCCEEEecCCCCHHHHHHHhhhhhhcceEEEEECC
Confidence 5567899999999988662 2222111245678887743
No 56
>1hbx_G ETS-domain protein ELK-4; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: a.4.5.21
Probab=31.52 E-value=45 Score=25.26 Aligned_cols=28 Identities=18% Similarity=0.340 Sum_probs=22.0
Q ss_pred EEEEEcCCCcEEEcCHHHHHHHHHHhhcc
Q 025897 217 VGVVSKENPEFRVLSIEEIDEHLTAISER 245 (246)
Q Consensus 217 i~ii~~~~~~~~~l~~~eI~~~l~~i~~~ 245 (246)
|.|.++++ .|+.+++++|...+..--+|
T Consensus 25 I~Wt~~~g-eFklvdpe~VArLWG~rKnk 52 (157)
T 1hbx_G 25 ICWTSNDG-QFKLLQAEEVARLWGIRKNK 52 (157)
T ss_dssp EEECSSSS-CEEETTHHHHHHHHHHGGGC
T ss_pred eEEeCCCC-EEEecCcHHHHHHHHhccCC
Confidence 56777766 59999999999998864443
No 57
>3c2i_A Methyl-CPG-binding protein 2; water mediated recognition; HET: DNA 5CM; 2.50A {Homo sapiens} PDB: 1qk9_A
Probab=27.70 E-value=77 Score=21.98 Aligned_cols=29 Identities=14% Similarity=0.093 Sum_probs=24.6
Q ss_pred CCcEEEEEEEcCCCcEEEcCHHHHHHHHHHh
Q 025897 212 ASEIEVGVVSKENPEFRVLSIEEIDEHLTAI 242 (246)
Q Consensus 212 ~~~iei~ii~~~~~~~~~l~~~eI~~~l~~i 242 (246)
.+..++++++..| -++-+..||..+|++-
T Consensus 41 ~gk~DvYY~sP~G--kkfRSk~ev~ryL~~~ 69 (97)
T 3c2i_A 41 AGKYDVYLINPQG--KAFRSKVELIMYFEKV 69 (97)
T ss_dssp TTCEEEEEECTTS--CEECSHHHHHHHHHHH
T ss_pred CCcceEEEECCCC--CEEECHHHHHHHHHHC
Confidence 4579999999987 6778999999999754
No 58
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=26.94 E-value=37 Score=26.05 Aligned_cols=32 Identities=9% Similarity=-0.030 Sum_probs=27.9
Q ss_pred ccceeCCCCccc-hhccHHHHHhccCceEEEEEc
Q 025897 12 HITIFSPEGRLF-QVEYAFKAVKAAGVTSIGVRG 44 (246)
Q Consensus 12 ~~t~f~p~Gr~~-Q~eya~~av~~~G~t~vgi~~ 44 (246)
-.-+||+.||-- -+|-|+++-.+ |.++|+|+.
T Consensus 80 ~vii~S~Sg~n~~~ie~A~~ake~-G~~vIaITs 112 (170)
T 3jx9_A 80 RVLIFTPDTERSDLLASLARYDAW-HTPYSIITL 112 (170)
T ss_dssp EEEEEESCSCCHHHHHHHHHHHHH-TCCEEEEES
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHC-CCcEEEEeC
Confidence 346899999966 89999999995 999999988
No 59
>1bc8_C SAP-1, protein (SAP-1 ETS domain); DNA-binding domain, winged helix-turn-helix, DNA-binding specificity, transcription/DNA complex; HET: DNA; 1.93A {Homo sapiens} SCOP: a.4.5.21 PDB: 1bc7_C* 1k6o_A 1dux_C*
Probab=25.83 E-value=30 Score=23.90 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=20.9
Q ss_pred EEEEEcCCCcEEEcCHHHHHHHHHHhhc
Q 025897 217 VGVVSKENPEFRVLSIEEIDEHLTAISE 244 (246)
Q Consensus 217 i~ii~~~~~~~~~l~~~eI~~~l~~i~~ 244 (246)
|.+.++++ .|+.+++++|...+..--+
T Consensus 24 I~W~~~~g-~Fkl~d~~~VArlWG~rKn 50 (93)
T 1bc8_C 24 ICWTSNDG-QFKLLQAEEVARLWGIRKN 50 (93)
T ss_dssp SEECSSSS-EEECTTHHHHHHHHHHHHT
T ss_pred eEEeCCCC-EEEecCHHHHHHHHHhcCC
Confidence 45667765 6999999999999876433
No 60
>3rj2_X ORF158L protein, putative uncharacterized protein; histone 3, protein binding; 2.20A {Singapore grouper iridovirus}
Probab=25.48 E-value=18 Score=26.12 Aligned_cols=16 Identities=25% Similarity=0.470 Sum_probs=13.1
Q ss_pred CCCcccceeCCCCccc
Q 025897 8 GYDRHITIFSPEGRLF 23 (246)
Q Consensus 8 ~yd~~~t~f~p~Gr~~ 23 (246)
+-|+..|.|+|+||+.
T Consensus 54 gm~h~vTfF~~~Grl~ 69 (138)
T 3rj2_X 54 FMRHRVTFFNATGRYI 69 (138)
T ss_dssp TCEEEEEEECTTSCEE
T ss_pred cceeEEEEEcCCCcEE
Confidence 3467899999999874
No 61
>1fli_A FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP: a.4.5.21
Probab=25.21 E-value=34 Score=23.85 Aligned_cols=27 Identities=11% Similarity=0.187 Sum_probs=20.1
Q ss_pred EEEEEcCCCcEEEcCHHHHHHHHHHhhc
Q 025897 217 VGVVSKENPEFRVLSIEEIDEHLTAISE 244 (246)
Q Consensus 217 i~ii~~~~~~~~~l~~~eI~~~l~~i~~ 244 (246)
|.+.+++ +.|+.+++++|...+..--.
T Consensus 25 I~W~~~~-g~Fklvd~e~VArlWG~rK~ 51 (98)
T 1fli_A 25 ITWEGTN-GEFKMTDPDEVARRWGERKS 51 (98)
T ss_dssp EECTTSS-SSCEECCHHHHHHHHHHHTC
T ss_pred eEEeCCC-CEEEEcCHHHHHHHHHhccC
Confidence 5555644 46999999999999876443
No 62
>3vxv_A Methyl-CPG-binding domain protein 4; methyl CPG binding domain, protein-DNA complex, versatIle BA recognition, hydrolase-DNA complex; HET: DNA 5CM; 2.00A {Mus musculus} PDB: 3vxx_A* 3vyb_A* 3vyq_A*
Probab=25.10 E-value=1e+02 Score=19.83 Aligned_cols=29 Identities=17% Similarity=0.209 Sum_probs=24.6
Q ss_pred CCcEEEEEEEcCCCcEEEcCHHHHHHHHHHh
Q 025897 212 ASEIEVGVVSKENPEFRVLSIEEIDEHLTAI 242 (246)
Q Consensus 212 ~~~iei~ii~~~~~~~~~l~~~eI~~~l~~i 242 (246)
.+..++++++..| -+.-+..||..+|..-
T Consensus 23 ~gk~DvyY~sP~G--kk~RSk~ev~~yL~~~ 51 (69)
T 3vxv_A 23 AGKFDVYFISPQG--LKFRSKRSLANYLLKN 51 (69)
T ss_dssp TTCEEEEEECTTS--CEECSHHHHHHHHHHH
T ss_pred CCcceEEEEcCCC--CEeeCHHHHHHHHHhC
Confidence 3578999999998 6778999999999874
No 63
>1pue_E Protein (transcription factor PU.1 (TF PU.1)); complex (transcription regulating/DNA), oncogene, transforming protein, DNA- binding, activator; HET: DNA; 2.10A {Mus musculus} SCOP: a.4.5.21
Probab=23.21 E-value=1.3e+02 Score=20.41 Aligned_cols=27 Identities=15% Similarity=0.154 Sum_probs=21.5
Q ss_pred EEEEEcCCCcEEEc--CHHHHHHHHHHhh
Q 025897 217 VGVVSKENPEFRVL--SIEEIDEHLTAIS 243 (246)
Q Consensus 217 i~ii~~~~~~~~~l--~~~eI~~~l~~i~ 243 (246)
|.+.+++.+.|+.+ ++++|...+..--
T Consensus 21 I~W~~~~~g~Fk~~~~~~e~VArlWG~rK 49 (89)
T 1pue_E 21 IWWVDKDKGTFQFSSKHKEALAHRWGIQK 49 (89)
T ss_dssp EEEEETTTTEEEECTTTHHHHHHHHHHHH
T ss_pred eEeecCCCcEEEEecCChHHHHHHhhccc
Confidence 78888876669986 7999999987643
No 64
>3kol_A Oxidoreductase, glyoxalase/bleomycin resistance protein/dioxygenase; metal ION binding, NYSGXRC, PSI2, structural genomics; 1.90A {Nostoc punctiforme pcc 73102}
Probab=22.75 E-value=1e+02 Score=21.54 Aligned_cols=20 Identities=20% Similarity=0.478 Sum_probs=15.2
Q ss_pred CCcEEEEECCCcceeeceEE
Q 025897 147 CGPRLFKCDPAGHFFGHKAT 166 (246)
Q Consensus 147 ~gp~Ly~id~~G~~~~~~~~ 166 (246)
.|..+|..||.|+..+....
T Consensus 132 ~g~~~~~~DPdG~~iel~~~ 151 (156)
T 3kol_A 132 TGRGVYFYDPDGFMIEIRCD 151 (156)
T ss_dssp CCEEEEEECTTSCEEEEEEC
T ss_pred CccEEEEECCCCCEEEEEec
Confidence 45678899999999876433
No 65
>1awc_A Protein (GA binding protein alpha); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: a.4.5.21
Probab=21.20 E-value=41 Score=23.97 Aligned_cols=28 Identities=18% Similarity=0.289 Sum_probs=21.4
Q ss_pred EEEEEcCCCcEEEcCHHHHHHHHHHhhcc
Q 025897 217 VGVVSKENPEFRVLSIEEIDEHLTAISER 245 (246)
Q Consensus 217 i~ii~~~~~~~~~l~~~eI~~~l~~i~~~ 245 (246)
|.++++++ .|+.+++++|...+..--+|
T Consensus 20 I~W~~~~g-eFkl~d~e~VArlWG~rKnk 47 (110)
T 1awc_A 20 ISWVGDEG-EFKLNQPELVAQKWGQRKNK 47 (110)
T ss_dssp SEECSSSS-EEECSSHHHHHHHHHHHHTC
T ss_pred eEEeCCCC-EEEecCHHHHHHHHHHccCC
Confidence 56777654 69999999999998764433
No 66
>4avp_A ETS translocation variant 1; transcription, transcriptional activation and repression, DN binding protein, E twenty-SIX, erwing sarcoma; 1.82A {Homo sapiens} PDB: 4b06_A
Probab=21.07 E-value=71 Score=22.52 Aligned_cols=28 Identities=18% Similarity=0.344 Sum_probs=21.3
Q ss_pred EEEEEcCCCcEEEcCHHHHHHHHHHhhcc
Q 025897 217 VGVVSKENPEFRVLSIEEIDEHLTAISER 245 (246)
Q Consensus 217 i~ii~~~~~~~~~l~~~eI~~~l~~i~~~ 245 (246)
|.++++++ .|+.+++++|...+..-.+|
T Consensus 31 I~W~~~~~-~Fkl~dp~~VA~lWG~rKnk 58 (106)
T 4avp_A 31 IAWTGRGM-EFKLIEPEEVARRWGIQKNR 58 (106)
T ss_dssp EEECSSTT-EEEESSHHHHHHHHHHHTTC
T ss_pred CcccCCCc-eEEecCHHHHHHHHHhccCC
Confidence 45777764 69999999999998764443
No 67
>3fpw_A HBPS, extracellular HAEM-binding protein; heme binding protein; 1.60A {Streptomyces reticuli} PDB: 3fpv_A
Probab=20.87 E-value=1.6e+02 Score=22.96 Aligned_cols=37 Identities=14% Similarity=0.302 Sum_probs=30.6
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEcCCC
Q 025897 186 DPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENP 225 (246)
Q Consensus 186 ~~~~s~~ea~~l~~~~l~~~~~~d~~~~~iei~ii~~~~~ 225 (246)
.+.+|+++|.+++..++..+.++.. .+-|.|++..|-
T Consensus 62 ~~~ltl~~A~~l~~aA~~~A~~~g~---pV~IaVvD~~G~ 98 (192)
T 3fpw_A 62 STHLTLEAATKAARAAVEAAEKDGR---HVSVAVVDRNGN 98 (192)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHTTC---CCEEEEEETTSC
T ss_pred cCCCCHHHHHHHHHHHHHHHHhcCC---CEEEEEEeCCCC
Confidence 5779999999999999998876654 588888887764
No 68
>2yxo_A Histidinol phosphatase; metal-dependent, hydrolase; 1.60A {Thermus thermophilus} PDB: 2yz5_A 2z4g_A
Probab=20.44 E-value=56 Score=26.08 Aligned_cols=33 Identities=12% Similarity=0.091 Sum_probs=27.6
Q ss_pred ceeCCCCccchhccHHHHHhccCceEEEEEcCCe
Q 025897 14 TIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDS 47 (246)
Q Consensus 14 t~f~p~Gr~~Q~eya~~av~~~G~t~vgi~~~dg 47 (246)
|.||+||..---|++..|.+ .|-..||++=++-
T Consensus 8 t~~S~DG~~~~ee~v~~A~~-~Gl~~iaiTDH~~ 40 (267)
T 2yxo_A 8 TPLCGHAEGHPEAYLEEARA-KGLKGVVFTDHSP 40 (267)
T ss_dssp CGGGSSCCSCHHHHHHHHHH-TTCSEEEEEEECC
T ss_pred cCCCCCCCCCHHHHHHHHHH-cCCCEEEEcCCCC
Confidence 58899999877799999999 5999999877644
Done!