Query 025898
Match_columns 246
No_of_seqs 118 out of 1036
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 20:07:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025898.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025898hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1cqm_A Ribosomal protein S6; a 100.0 2.4E-32 8.2E-37 213.8 12.2 99 58-156 1-100 (101)
2 3r8n_F 30S ribosomal protein S 100.0 6.1E-33 2.1E-37 217.1 4.7 100 58-157 1-100 (100)
3 3i1m_F 30S ribosomal protein S 100.0 1.8E-32 6.2E-37 226.1 7.4 107 58-164 1-107 (135)
4 2j5a_A 30S ribosomal protein S 100.0 5.1E-31 1.7E-35 209.5 12.5 97 57-153 6-104 (110)
5 3r3t_A 30S ribosomal protein S 100.0 8.4E-32 2.9E-36 210.3 -0.9 96 56-151 2-98 (99)
6 1vmb_A 30S ribosomal protein S 100.0 1.3E-30 4.4E-35 216.2 5.8 107 54-160 14-122 (140)
7 3bbn_F Ribosomal protein S6; s 99.9 2.2E-28 7.5E-33 208.6 9.0 96 57-152 61-166 (168)
8 2kjw_A TS9, 30S ribosomal prot 99.6 1.1E-16 3.7E-21 125.3 3.4 57 54-110 39-96 (96)
9 3zzp_A TS9, ribosomal protein 99.0 1.1E-10 3.8E-15 87.7 4.3 42 111-152 2-43 (77)
10 2kjw_A TS9, 30S ribosomal prot 98.8 1.4E-09 4.8E-14 85.0 1.3 40 111-150 2-41 (96)
11 3zzp_A TS9, ribosomal protein 97.9 6.1E-06 2.1E-10 61.8 3.7 38 54-91 39-77 (77)
12 4fp9_B Mterf domain-containing 48.2 3.8 0.00013 37.5 0.0 18 78-95 184-201 (335)
13 1u8s_A Glycine cleavage system 45.9 1.1E+02 0.0038 24.4 8.6 63 58-135 3-66 (192)
14 2ayu_A Nucleosome assembly pro 35.2 8 0.00027 36.8 0.0 9 113-121 227-235 (417)
15 2ayu_A Nucleosome assembly pro 31.6 2.9 9.8E-05 39.8 -3.7 12 59-70 227-240 (417)
16 3lo3_A Uncharacterized conserv 28.6 94 0.0032 22.8 5.0 67 57-129 2-68 (94)
17 1vq3_A Phosphoribosylformylgly 28.2 1.3E+02 0.0046 22.7 5.9 68 57-143 14-88 (94)
18 2nyi_A Unknown protein; protei 25.8 2.2E+02 0.0074 23.1 7.3 50 77-136 17-70 (195)
19 2id1_A Hypothetical protein; a 23.4 2.1E+02 0.0072 22.8 6.5 52 58-121 31-82 (130)
20 3n0v_A Formyltetrahydrofolate 21.9 4.1E+02 0.014 23.3 8.9 64 58-135 6-71 (286)
21 3lou_A Formyltetrahydrofolate 21.7 3.8E+02 0.013 23.7 8.5 65 57-135 7-76 (292)
22 2zw2_A Putative uncharacterize 20.9 1.8E+02 0.0061 21.5 5.3 74 58-150 5-85 (92)
No 1
>1cqm_A Ribosomal protein S6; alzheimer disease, oligomerization; 1.65A {Thermus thermophilus} SCOP: d.58.14.1 PDB: 1cqn_A 1qjh_A 1ris_A 1fka_F 1gix_I* 1hnw_F* 1hnx_F* 1hnz_F* 1hr0_F 1i94_F* 1i95_F* 1i96_F* 1i97_F* 1ibk_F* 1ibl_F* 1ibm_F 1j5e_F 1jgo_I* 1jgp_I* 1jgq_I* ...
Probab=99.98 E-value=2.4e-32 Score=213.85 Aligned_cols=99 Identities=26% Similarity=0.414 Sum_probs=93.9
Q ss_pred ccceeEEEEecCCC-hhhHHHHHHHHHHHHhhCCCEEEEEEeeeccccccccCCCCeeEEEEEEEEeCcchHHHHHHHhC
Q 025898 58 RRHYEVVYLIHEKY-EEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYILMNFELEAKWINDFKTMLD 136 (246)
Q Consensus 58 Mr~YEim~ILrp~~-eEei~~liekv~~iI~k~GG~I~~vedwG~RrLAY~IkK~~~G~Yvl~~F~a~psaI~ELer~Lr 136 (246)
||+||+|+|++|++ ++++++++++++++|+++||+|+++++||.|+|||+|+|+++|||++|+|.|+|+++++|++.|+
T Consensus 1 M~~YE~~~Il~p~l~~e~~~~~~~~~~~~i~~~gg~i~~~e~wG~R~LAY~I~k~~~G~Y~l~~f~a~~~~i~eler~lr 80 (101)
T 1cqm_A 1 MRRYEVNIVLNPNLDQSQLALEKEIIQRALENYGARVEKVAILGLRRLAYPIAKDPQGYFLWYQVEMPEDRVNDLARELR 80 (101)
T ss_dssp CEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEECHHHHHHHHHHHH
T ss_pred CCceeEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCcccccCcCCCCEEEEEEEEEEeChHHHHHHHHHhc
Confidence 89999999999997 46899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeEEEEEeecCCCCCC
Q 025898 137 KDEKVIRHLVIKRDKAITED 156 (246)
Q Consensus 137 lde~VLR~mVVK~de~i~e~ 156 (246)
+|++|||||++|++++.+++
T Consensus 81 ~~~~VlR~l~vk~~~~~~~~ 100 (101)
T 1cqm_A 81 IRDNVRRVMVVKSQEPFLAN 100 (101)
T ss_dssp TSTTEEEEEEEECSSCCC--
T ss_pred CCcceEEEEEEEecccccCC
Confidence 99999999999999876654
No 2
>3r8n_F 30S ribosomal protein S6; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_F 3fih_F* 3iy8_F 3j18_F* 2wwl_F 3oar_F 3oaq_F 3ofb_F 3ofa_F 3ofp_F 3ofx_F 3ofy_F 3ofo_F 3r8o_F 4a2i_F 4gd1_F 4gd2_F 2gy9_F 2gyb_F
Probab=99.97 E-value=6.1e-33 Score=217.12 Aligned_cols=100 Identities=38% Similarity=0.707 Sum_probs=96.9
Q ss_pred ccceeEEEEecCCChhhHHHHHHHHHHHHhhCCCEEEEEEeeeccccccccCCCCeeEEEEEEEEeCcchHHHHHHHhCC
Q 025898 58 RRHYEVVYLIHEKYEEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYILMNFELEAKWINDFKTMLDK 137 (246)
Q Consensus 58 Mr~YEim~ILrp~~eEei~~liekv~~iI~k~GG~I~~vedwG~RrLAY~IkK~~~G~Yvl~~F~a~psaI~ELer~Lrl 137 (246)
||+||+|+|++|+.++++++++++++++|+++||+|+++++||.|+|||+|+|+++|||++|+|.|+|+++++|++.|++
T Consensus 1 M~~YE~~~Il~p~~~e~~~~~~~~~~~~i~~~gg~i~~~e~wG~r~LAY~I~k~~~G~Y~l~~f~a~~~~i~eler~lr~ 80 (100)
T 3r8n_F 1 MRHYEIVFMVHPDQSEQVPGMIERYTAAITGAEGKIHRLEDWGRRQLAYPINKLHKAHYVLMNVEAPQEVIDELETTFRF 80 (100)
T ss_dssp CEEECCCCEECGGGTTHHHHHHHHHHHHHHTTTCBCCCCEEEEEECCSSCTTSCSCEEEEECCEEECTTTTHHHHHHHHH
T ss_pred CCceEEEEEECCCchHHHHHHHHHHHHHHHHCCCEEEEEEeeecccCCeEcCCCCEEEEEEEEEEeChHHHHHHHHHhcC
Confidence 89999999999998888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeEEEEEeecCCCCCCC
Q 025898 138 DEKVIRHLVIKRDKAITEDC 157 (246)
Q Consensus 138 de~VLR~mVVK~de~i~e~~ 157 (246)
|++|||||++|+++..++++
T Consensus 81 ~~~VlR~livk~~~~~~~~s 100 (100)
T 3r8n_F 81 NDAVIRSMVMRTKHAVTEAS 100 (100)
T ss_dssp CTTEEECCCCCCSSCCCCCC
T ss_pred CCCeEEEEEEEeCccccCCC
Confidence 99999999999999887764
No 3
>3i1m_F 30S ribosomal protein S6; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1p6g_F 1p87_F* 1vs7_F* 2avy_F 2aw7_F 1vs5_F 2i2u_F 2i2p_F* 2qan_F* 2qb9_F* 2qbb_F* 2qbd_F 2qbf_F 2qbh_F* 2qbj_F* 2qou_F* 2qow_F* 2qoy_F* 2qp0_F* 2vho_F ...
Probab=99.97 E-value=1.8e-32 Score=226.05 Aligned_cols=107 Identities=36% Similarity=0.661 Sum_probs=98.7
Q ss_pred ccceeEEEEecCCChhhHHHHHHHHHHHHhhCCCEEEEEEeeeccccccccCCCCeeEEEEEEEEeCcchHHHHHHHhCC
Q 025898 58 RRHYEVVYLIHEKYEEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYILMNFELEAKWINDFKTMLDK 137 (246)
Q Consensus 58 Mr~YEim~ILrp~~eEei~~liekv~~iI~k~GG~I~~vedwG~RrLAY~IkK~~~G~Yvl~~F~a~psaI~ELer~Lrl 137 (246)
||+||+|||++|+++++++++++++.++|+++||+|+++++||.|+|||+|+|+++|||++|+|.|+|+++++|++.|++
T Consensus 1 Mr~YE~~~Il~P~~~e~v~~~ve~~~~~I~~~GG~I~~ve~wG~R~LAY~I~K~~~G~Y~l~~f~a~~~~i~ELer~lri 80 (135)
T 3i1m_F 1 MRHYEIVFMVHPDQSEQVPGMIERYTAAITGAEGKIHRLEDWGRRQLAYPINKLHKAHYVLMNVEAPQEVIDELETTFRF 80 (135)
T ss_dssp CCEECBEEEECSTTTTSHHHHHHHHHHHHHHTTCEECCCEEEEEECCSSCTTSSSCEEEEECCEECCTTHHHHHHHHHHH
T ss_pred CCceEEEEEECCCchHHHHHHHHHHHHHHHHCCCEEEEEEeeccccCceEcCCCCeEEEEEEEEEeCHHHHHHHHHHhcC
Confidence 89999999999998878999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeEEEEEeecCCCCCCCCCCCCcc
Q 025898 138 DEKVIRHLVIKRDKAITEDCPPPPEFH 164 (246)
Q Consensus 138 de~VLR~mVVK~de~i~e~~p~~p~f~ 164 (246)
|++|||||++|+++..+++||+.+...
T Consensus 81 ~e~VLR~livk~d~~~~~~s~~~~~~~ 107 (135)
T 3i1m_F 81 NDAVIRSMVMRTKHAVTEASPMVKAKD 107 (135)
T ss_dssp CSSEESCCBCCCSSCCCSCC-------
T ss_pred CCCeEEEEEEEeccCccCCChhhhhhh
Confidence 999999999999999999999986654
No 4
>2j5a_A 30S ribosomal protein S6; ribonucleoprotein, RIBO protein S6, RNA-binding, rRNA-binding, protein folding; 2.3A {Aquifex aeolicus} SCOP: d.58.14.1
Probab=99.97 E-value=5.1e-31 Score=209.55 Aligned_cols=97 Identities=34% Similarity=0.599 Sum_probs=93.0
Q ss_pred cccceeEEEEecCCCh-hhHHHHHHHHHHHHhhCCCEEEEEEeeeccccccccCCCCeeEEEEEEEEe-CcchHHHHHHH
Q 025898 57 RRRHYEVVYLIHEKYE-EDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYILMNFEL-EAKWINDFKTM 134 (246)
Q Consensus 57 ~Mr~YEim~ILrp~~e-Eei~~liekv~~iI~k~GG~I~~vedwG~RrLAY~IkK~~~G~Yvl~~F~a-~psaI~ELer~ 134 (246)
.||+||+|+|++|+++ ++++++++++.++|+++||+|+++++||.|+|||+|+|+++|||++++|.| +|+++++|++.
T Consensus 6 ~M~~YE~~~Il~p~l~~e~~~~~v~~~~~~i~~~Gg~i~~~e~wG~R~LAY~I~K~~~G~Y~l~~f~a~~~~~i~eler~ 85 (110)
T 2j5a_A 6 TLRYYETVFAVKPTLSEEEMKKKFEQVKEFIKQKGGEILYEEDWGMRQLAYPIQKFNNARYFLVQFKTENPQLPNELDFQ 85 (110)
T ss_dssp SCEEEEEEEEECTTSCHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEEECSSCSSSCSEEEEEEEEEEESCTTHHHHHHHH
T ss_pred CCCcceEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCcccccCcCCCCEEEEEEEEEEeCCHHHHHHHHHH
Confidence 5999999999999975 579999999999999999999999999999999999999999999999999 99999999999
Q ss_pred hCCCCCeeEEEEEeecCCC
Q 025898 135 LDKDEKVIRHLVIKRDKAI 153 (246)
Q Consensus 135 Lrlde~VLR~mVVK~de~i 153 (246)
|++|++|||||++|+++..
T Consensus 86 lr~~e~VlR~livk~~~~~ 104 (110)
T 2j5a_A 86 LKIDEDVIRWLNIQIKESE 104 (110)
T ss_dssp HHHCTTEEEEEEEEECGGG
T ss_pred hCCCcCeEEEEEEEccccc
Confidence 9999999999999998654
No 5
>3r3t_A 30S ribosomal protein S6; structural genomics, center for structural genomics of infec diseases, csgid, beta-barrel, cytosol; 2.30A {Bacillus anthracis}
Probab=99.96 E-value=8.4e-32 Score=210.30 Aligned_cols=96 Identities=29% Similarity=0.635 Sum_probs=91.4
Q ss_pred ccccceeEEEEecCCCh-hhHHHHHHHHHHHHhhCCCEEEEEEeeeccccccccCCCCeeEEEEEEEEeCcchHHHHHHH
Q 025898 56 ERRRHYEVVYLIHEKYE-EDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYILMNFELEAKWINDFKTM 134 (246)
Q Consensus 56 ~~Mr~YEim~ILrp~~e-Eei~~liekv~~iI~k~GG~I~~vedwG~RrLAY~IkK~~~G~Yvl~~F~a~psaI~ELer~ 134 (246)
+.||+||+|+|++|+++ ++++++++++.++|+++||+|+++++||.|+|||+|+|+++|||++++|.|+|+++++|++.
T Consensus 2 ~~M~~YE~~~Il~p~~~~e~~~~~~~~~~~~i~~~gg~i~~~e~wG~R~LAY~I~k~~~G~Y~l~~f~a~~~~i~eler~ 81 (99)
T 3r3t_A 2 NAMRKYEIMYIIRPGVEEEAQKALVERFAGVLTNNGAEIINTKEWGKRRLAYEINDLREGFYMILNVNANAEAINEFDRL 81 (99)
T ss_dssp -CCCCCCCCCCCCTTSCHHHHHHHHHHHHHHHHTTTCCCCCCCCCCSCCCCCCCCCCCCSCCCCCCCCCCHHHHHHHHHH
T ss_pred CCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEeeccccCcCcCCCCEEEEEEEEEEeCHHHHHHHHHH
Confidence 46999999999999985 57999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCeeEEEEEeecC
Q 025898 135 LDKDEKVIRHLVIKRDK 151 (246)
Q Consensus 135 Lrlde~VLR~mVVK~de 151 (246)
|+++++|||||++|+++
T Consensus 82 lr~~~~VlR~livk~~~ 98 (99)
T 3r3t_A 82 AKINEDILRHIVVKEEE 98 (99)
T ss_dssp HHHCTTCCCCCCCCCC-
T ss_pred hcCCCCeEEEEEEEecC
Confidence 99999999999999875
No 6
>1vmb_A 30S ribosomal protein S6; TM0603, structural genomics, JCSG, structure initiative, PSI, joint center for structural GENO translation; 1.70A {Thermotoga maritima} SCOP: d.58.14.1
Probab=99.96 E-value=1.3e-30 Score=216.25 Aligned_cols=107 Identities=20% Similarity=0.446 Sum_probs=96.9
Q ss_pred hhccccceeEEEEecCCCh-hhHHHHHHHHHHHHhhC-CCEEEEEEeeeccccccccCCCCeeEEEEEEEEeCcchHHHH
Q 025898 54 NVERRRHYEVVYLIHEKYE-EDVGSVNEKVQDFLREK-KGRVWRLNDWGLRRLAYKIQKAKKAHYILMNFELEAKWINDF 131 (246)
Q Consensus 54 ~~~~Mr~YEim~ILrp~~e-Eei~~liekv~~iI~k~-GG~I~~vedwG~RrLAY~IkK~~~G~Yvl~~F~a~psaI~EL 131 (246)
-...||+||+|||++|+++ ++++++++++.++|+++ ||+|+++++||+|+|||||+|+++|+|++|+|.|+|++|++|
T Consensus 14 ~~~~Mr~YE~~~Il~P~l~ee~v~~~ve~~~~~I~~~~GG~I~~ve~wG~R~LAY~I~K~~~G~Yvl~~f~a~~~~i~EL 93 (140)
T 1vmb_A 14 AYVKERIYESMFIIAPNVPEEERENLVERVKKIIEERVKGKIDKVERMGMRKFAYEIKKFNEGDYTVIYFRCDGQNLQEL 93 (140)
T ss_dssp ---CCEEEEEEEEECTTSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEECSSSTHHH
T ss_pred cccccccceEEEEECCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeecCcccccccCCCCEEEEEEEEEEECHHHHHHH
Confidence 3456999999999999975 57999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCeeEEEEEeecCCCCCCCCCC
Q 025898 132 KTMLDKDEKVIRHLVIKRDKAITEDCPPP 160 (246)
Q Consensus 132 er~Lrlde~VLR~mVVK~de~i~e~~p~~ 160 (246)
++.||+|++|||||++|+++.....+++.
T Consensus 94 er~lri~e~VLR~livK~~~~~~~~s~~~ 122 (140)
T 1vmb_A 94 ENFYRVTPEIIRWQTFRRFDLEKKERKAQ 122 (140)
T ss_dssp HHHHHTCTTEEEEEEEECHHHHHHHHHHH
T ss_pred HHHhcCCcceeEEEEEEecccccchhhhh
Confidence 99999999999999999987655544443
No 7
>3bbn_F Ribosomal protein S6; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=99.95 E-value=2.2e-28 Score=208.58 Aligned_cols=96 Identities=21% Similarity=0.342 Sum_probs=91.3
Q ss_pred cccceeEEEEecCCCh-hhHHHHHHHHHHHHhhCCCEEEEEEeeeccccccccCCCC---------eeEEEEEEEEeCcc
Q 025898 57 RRRHYEVVYLIHEKYE-EDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAK---------KAHYILMNFELEAK 126 (246)
Q Consensus 57 ~Mr~YEim~ILrp~~e-Eei~~liekv~~iI~k~GG~I~~vedwG~RrLAY~IkK~~---------~G~Yvl~~F~a~ps 126 (246)
.||+||+|+|++|+++ ++++++++++.++|+++||+|+++++||+|+|||+|+|++ +|+|++|+|.|+|+
T Consensus 61 ~Mr~YE~m~IlrPdl~eeev~alver~~~iI~~~GG~I~~ve~WG~RrLAY~IkK~~kgg~~~~h~eG~Yvlm~F~a~p~ 140 (168)
T 3bbn_F 61 GLRQYETMAVLRPDMTEDERLTLTQKYEELLVAGGAMYVEVFNRGVIPLAYSIKRKNKAGETNNYLDGIYLLFTYFTKPE 140 (168)
T ss_dssp -CEEEEEEEEECTTSCHHHHHSTTHHHHHHHTTTSCEEEEEEEEEECCCSSCTTSCSSSCSSCCCCCCEEEEEEEEECTT
T ss_pred CCCceeEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEecccccccceeccCcccccccccceEEEEEEEEEeCHH
Confidence 4999999999999975 5799999999999999999999999999999999999998 79999999999999
Q ss_pred hHHHHHHHhCCCCCeeEEEEEeecCC
Q 025898 127 WINDFKTMLDKDEKVIRHLVIKRDKA 152 (246)
Q Consensus 127 aI~ELer~Lrlde~VLR~mVVK~de~ 152 (246)
+|++|++.|++|++|||||++|+++.
T Consensus 141 ~I~ELeR~Lride~VLR~liVK~d~~ 166 (168)
T 3bbn_F 141 SISPLEAALVTDDDVIRSSSFKIRKR 166 (168)
T ss_dssp SSHHHHHHHHTSSCCSEEECCBCCSC
T ss_pred HHHHHHHHhcCCcCeeEEEEEecccc
Confidence 99999999999999999999998854
No 8
>2kjw_A TS9, 30S ribosomal protein S6; S6 permutant, solution structure, backbone dynamics, folding, ribonucleoprotein, RNA-binding, rRNA-binding; NMR {Thermus thermophilus}
Probab=99.62 E-value=1.1e-16 Score=125.35 Aligned_cols=57 Identities=30% Similarity=0.452 Sum_probs=53.2
Q ss_pred hhccccceeEEEEecCCCh-hhHHHHHHHHHHHHhhCCCEEEEEEeeeccccccccCC
Q 025898 54 NVERRRHYEVVYLIHEKYE-EDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQK 110 (246)
Q Consensus 54 ~~~~Mr~YEim~ILrp~~e-Eei~~liekv~~iI~k~GG~I~~vedwG~RrLAY~IkK 110 (246)
.+++||+||+|||++|+++ +++++++++++++|+++||+|.++++||+|+|||||+|
T Consensus 39 ~~e~Mr~YE~m~Il~P~l~ee~~~~~ve~~~~iI~~~gG~i~~ve~WG~R~LAY~I~K 96 (96)
T 2kjw_A 39 ASTTPGRYEVNIVLNPNLDQSQLALEKEIIQRALENYGARVEKVEELGLRRLAYPIAK 96 (96)
T ss_dssp ECSSSSCEEEEEECCSSCCHHHHHHHHHHHHHHHHHHTCCCSCCEECCCCCCCCSCCC
T ss_pred ehhhhhhhheeeeeCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccccccccccCCC
Confidence 4556999999999999985 57999999999999999999999999999999999997
No 9
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=99.05 E-value=1.1e-10 Score=87.72 Aligned_cols=42 Identities=17% Similarity=0.237 Sum_probs=38.8
Q ss_pred CCeeEEEEEEEEeCcchHHHHHHHhCCCCCeeEEEEEeecCC
Q 025898 111 AKKAHYILMNFELEAKWINDFKTMLDKDEKVIRHLVIKRDKA 152 (246)
Q Consensus 111 ~~~G~Yvl~~F~a~psaI~ELer~Lrlde~VLR~mVVK~de~ 152 (246)
+++|||++++|.|+|+++++|+|.||++++|||||++|.+++
T Consensus 2 k~~G~Yvl~~~~a~~~~i~Eler~~rine~VlR~l~vr~d~~ 43 (77)
T 3zzp_A 2 DPQGYTTWYQVEMPEDRVNDLARELRIRDNVRRVMVVASTTP 43 (77)
T ss_dssp --CTTEEEEEEECCHHHHHHHHHHHHTSTTEEEEEEEECSST
T ss_pred CceEEEEEEEEEeCHhHHHHHHHHhCCCHHHHHHHHHhccCC
Confidence 468999999999999999999999999999999999998865
No 10
>2kjw_A TS9, 30S ribosomal protein S6; S6 permutant, solution structure, backbone dynamics, folding, ribonucleoprotein, RNA-binding, rRNA-binding; NMR {Thermus thermophilus}
Probab=98.76 E-value=1.4e-09 Score=84.96 Aligned_cols=40 Identities=18% Similarity=0.332 Sum_probs=38.9
Q ss_pred CCeeEEEEEEEEeCcchHHHHHHHhCCCCCeeEEEEEeec
Q 025898 111 AKKAHYILMNFELEAKWINDFKTMLDKDEKVIRHLVIKRD 150 (246)
Q Consensus 111 ~~~G~Yvl~~F~a~psaI~ELer~Lrlde~VLR~mVVK~d 150 (246)
+++|||++++|+|+|+++++|+|.+|++++|||||+++++
T Consensus 2 ~~~g~Y~~~~~~a~~~~v~eler~~r~~e~vlR~l~v~~e 41 (96)
T 2kjw_A 2 DPQGYFLWYQVEMPEDRVNDLARELRIRDNVRRVMVVAST 41 (96)
T ss_dssp TTSCCCEEECCCCCHHHHHHHHHHHHHCTTCSEEEEEECS
T ss_pred CceEEEEEEEeecChhHHHHHHHHhccchhhhhhhheehh
Confidence 5789999999999999999999999999999999999998
No 11
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=97.93 E-value=6.1e-06 Score=61.82 Aligned_cols=38 Identities=16% Similarity=0.250 Sum_probs=34.1
Q ss_pred hhccccceeEEEEecCCChh-hHHHHHHHHHHHHhhCCC
Q 025898 54 NVERRRHYEVVYLIHEKYEE-DVGSVNEKVQDFLREKKG 91 (246)
Q Consensus 54 ~~~~Mr~YEim~ILrp~~eE-ei~~liekv~~iI~k~GG 91 (246)
+.+..|+||+|||++|++++ ++++++++++++|+++||
T Consensus 39 r~d~~r~YE~m~Il~P~l~ee~~~~~vek~~~~i~~~Gg 77 (77)
T 3zzp_A 39 ASTTPGRYEVNIVLNPNLDQSQLQNEKEIIQRALENYGA 77 (77)
T ss_dssp ECSSTTEEEEEEEECTTCCHHHHHHHHHHHHHHHHHHTC
T ss_pred hccCCCceEEEEEECCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 45568999999999999865 799999999999999987
No 12
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=48.19 E-value=3.8 Score=37.55 Aligned_cols=18 Identities=11% Similarity=-0.247 Sum_probs=8.1
Q ss_pred HHHHHHHHHhhCCCEEEE
Q 025898 78 VNEKVQDFLREKKGRVWR 95 (246)
Q Consensus 78 liekv~~iI~k~GG~I~~ 95 (246)
+..++.-++..-|.....
T Consensus 184 L~~K~efLv~~Mgl~~~e 201 (335)
T 4fp9_B 184 LEYKFQYAYFRMGIKHPD 201 (335)
T ss_dssp HHHHHHHHHTTTCCCHHH
T ss_pred HHHHHHHHHHHhCCCHHH
Confidence 444444444444444433
No 13
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=45.87 E-value=1.1e+02 Score=24.44 Aligned_cols=63 Identities=13% Similarity=0.051 Sum_probs=40.5
Q ss_pred cc-ceeEEEEecCCChhhHHHHHHHHHHHHhhCCCEEEEEEeeeccccccccCCCCeeEEEEEEEEeCcchHHHHHHHh
Q 025898 58 RR-HYEVVYLIHEKYEEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYILMNFELEAKWINDFKTML 135 (246)
Q Consensus 58 Mr-~YEim~ILrp~~eEei~~liekv~~iI~k~GG~I~~vedwG~RrLAY~IkK~~~G~Yvl~~F~a~psaI~ELer~L 135 (246)
|. .|.+.++. |+. + .++.++..+|.++|++|....-... ..+.+..+.|..++..+..|.+.|
T Consensus 3 m~~~~~itv~~-~Dr-p---Giva~vt~~La~~g~NI~d~~~~~~----------~~~f~~~~~v~~~~~~~~~l~~~L 66 (192)
T 1u8s_A 3 LTQHLVITAVG-TDR-P---GICNEVVRLVTQAGCNIIDSRIAMF----------GKEFTLLMLISGSPSNITRVETTL 66 (192)
T ss_dssp CCEEEEEEEEE-ECC-T---THHHHHHHHHHHTTCEEEEEEEEEE----------TTEEEEEEEEEECHHHHHHHHHHH
T ss_pred CCcEEEEEEEc-CCC-C---cHHHHHHHHHHHCCCCEEeeeeeec----------CCceEEEEEEecCCCCHHHHHHHH
Confidence 44 46655554 442 2 4688899999999999998876541 234444566666655566666554
No 14
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=35.15 E-value=8 Score=36.77 Aligned_cols=9 Identities=22% Similarity=0.497 Sum_probs=4.9
Q ss_pred eeEEEEEEE
Q 025898 113 KAHYILMNF 121 (246)
Q Consensus 113 ~G~Yvl~~F 121 (246)
.|+=+.|+|
T Consensus 227 ~gF~L~F~F 235 (417)
T 2ayu_A 227 PGFKLLFRF 235 (417)
T ss_dssp CEEEEEEEE
T ss_pred cceEEEEEe
Confidence 355555555
No 15
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=31.56 E-value=2.9 Score=39.83 Aligned_cols=12 Identities=0% Similarity=0.337 Sum_probs=8.1
Q ss_pred cceeEEEEe--cCC
Q 025898 59 RHYEVVYLI--HEK 70 (246)
Q Consensus 59 r~YEim~IL--rp~ 70 (246)
+-|-+.|-| .|+
T Consensus 227 ~gF~L~F~F~~~~N 240 (417)
T 2ayu_A 227 PGFKLLFRFDSSAN 240 (417)
T ss_dssp CEEEEEEEECTTTC
T ss_pred cceEEEEEeCCCCC
Confidence 357788888 554
No 16
>3lo3_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.38A {Colwellia psychrerythraea} SCOP: d.58.4.0
Probab=28.63 E-value=94 Score=22.84 Aligned_cols=67 Identities=16% Similarity=0.188 Sum_probs=43.1
Q ss_pred cccceeEEEEecCCChhhHHHHHHHHHHHHhhCCCEEEEEEeeeccccccccCCCCeeEEEEEEEEeCcchHH
Q 025898 57 RRRHYEVVYLIHEKYEEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYILMNFELEAKWIN 129 (246)
Q Consensus 57 ~Mr~YEim~ILrp~~eEei~~liekv~~iI~k~GG~I~~vedwG~RrLAY~IkK~~~G~Yvl~~F~a~psaI~ 129 (246)
+|+-| .+.-++.+-.+..+.=.+.+..+|.+.||++.- .| ....- ......+.-+++.|.+-..+..
T Consensus 2 ~m~aY-~i~~~~v~d~e~y~~Y~~~~~~~l~~~GG~~l~---rg-~~~~l-EG~~~~~~~viieFps~~aa~a 68 (94)
T 3lo3_A 2 NATAY-IIVGLTPKDAEKLQQYGARVASTLAKYSGEVLV---KG-SVEQL-HGKFEHKAQVILEFPSREDAYN 68 (94)
T ss_dssp CCCEE-EEEEEEECCHHHHHHHHHHHHHHHHTTTCEEEE---EE-ECEEE-ESCCCCSEEEEEEESSHHHHHH
T ss_pred CccEE-EEEEEEECCHHHHHHHHHHHHHHHHHcCCEEEE---Ec-ccccc-cCCCCCCeEEEEECCCHHHHHH
Confidence 58888 333344444566888899999999999998865 34 33221 2222357778888876554443
No 17
>1vq3_A Phosphoribosylformylglycinamidine synthase, PURS; TM1244, PURS SUB 6.3.5.3), structural genomics, joint center for structural JCSG; 1.90A {Thermotoga maritima} SCOP: d.284.1.1 PDB: 3d54_B*
Probab=28.23 E-value=1.3e+02 Score=22.68 Aligned_cols=68 Identities=13% Similarity=0.075 Sum_probs=44.2
Q ss_pred cccceeEEEEecCCC-hhhHHHHHHHHHHHHhhCCCEEEEEEeeeccccccc-cCCCCeeEEEEEEEEeC-----cchHH
Q 025898 57 RRRHYEVVYLIHEKY-EEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYK-IQKAKKAHYILMNFELE-----AKWIN 129 (246)
Q Consensus 57 ~Mr~YEim~ILrp~~-eEei~~liekv~~iI~k~GG~I~~vedwG~RrLAY~-IkK~~~G~Yvl~~F~a~-----psaI~ 129 (246)
+|-+.++.+-++|.. .++-+++. ..+.. |.|. ++.-+.|.|+.+..+++ .+.+.
T Consensus 14 ~~~~~~V~V~lKpgVlDPqG~aV~----~aL~~---------------LG~~~V~~VR~GK~~el~~~~~~~~~a~~~v~ 74 (94)
T 1vq3_A 14 PLFKFAIDVQYRSNVRDPRGETIE----RVLRE---------------EKGLPVKKLRLGKSIHLEVEAENKEKAYEIVK 74 (94)
T ss_dssp CEEEEEEEEEECTTSCCHHHHHHH----HHHHH---------------TTCCCEEEEEEEEEEEEEEECSSHHHHHHHHH
T ss_pred ceEEEEEEEEECCCCcCcHHHHHH----HHHHH---------------cCCCccceeeeeeEEEEEecCCCHHHHHHHHH
Confidence 477788888889986 44443333 23333 3332 55567799999999986 45677
Q ss_pred HHHHHhCCCCCeeE
Q 025898 130 DFKTMLDKDEKVIR 143 (246)
Q Consensus 130 ELer~Lrlde~VLR 143 (246)
++-..|-.|+-|=.
T Consensus 75 ~mc~kLLaNpVIE~ 88 (94)
T 1vq3_A 75 KACEELLVNPVVEE 88 (94)
T ss_dssp HHHHHTTSCTTTEE
T ss_pred HHHHHHcCCCcceE
Confidence 77778855554433
No 18
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=25.82 E-value=2.2e+02 Score=23.07 Aligned_cols=50 Identities=12% Similarity=-0.001 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhhCCCEEEEEEeeeccccccccCCCCeeEEEEEEEEeCcch----HHHHHHHhC
Q 025898 77 SVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYILMNFELEAKW----INDFKTMLD 136 (246)
Q Consensus 77 ~liekv~~iI~k~GG~I~~vedwG~RrLAY~IkK~~~G~Yvl~~F~a~psa----I~ELer~Lr 136 (246)
.++..+..+|.++|++|...+-.- ...+.++.+.|..++.. +..|++.|.
T Consensus 17 Giva~vs~~La~~g~NI~da~q~~----------~~~~f~m~~~v~~~~~~~~~~~~~l~~~L~ 70 (195)
T 2nyi_A 17 GIVHDFSWALKNISANVESSRMAC----------LGGDFAMIVLVSLNAKDGKLIQSALESALP 70 (195)
T ss_dssp THHHHHHHHHHHTTCEEEEEEEEE----------ETTEEEEEEEEEESSSSSHHHHHHHHHHST
T ss_pred cHHHHHHHHHHHCCCCEEEEEeEE----------ECCeEEEEEEEEecCccchhHHHHHHHHHH
Confidence 468889999999999999988762 22344445666655433 788888885
No 19
>2id1_A Hypothetical protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.00A {Chromobacterium violaceum} SCOP: d.218.1.12
Probab=23.40 E-value=2.1e+02 Score=22.79 Aligned_cols=52 Identities=12% Similarity=0.162 Sum_probs=39.5
Q ss_pred ccceeEEEEecCCChhhHHHHHHHHHHHHhhCCCEEEEEEeeeccccccccCCCCeeEEEEEEE
Q 025898 58 RRHYEVVYLIHEKYEEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHYILMNF 121 (246)
Q Consensus 58 Mr~YEim~ILrp~~eEei~~liekv~~iI~k~GG~I~~vedwG~RrLAY~IkK~~~G~Yvl~~F 121 (246)
....+.++|+......+++++.+.+.+.+.+.|.. +..+.+...|.++++-|
T Consensus 31 s~~~DyfVIaTg~S~rqv~Aiad~v~~~lk~~g~~------------~~~~EG~~~~~WvLlD~ 82 (130)
T 2id1_A 31 TSLFQRMIVATGDSNRQVKALANSVQVKLKEAGVD------------IVGSEGHESGEWVLVDA 82 (130)
T ss_dssp CSSCSEEEEEECSSHHHHHHHHHHHHHHHHHTTCC------------CCBCCSTTTSSEEEEEE
T ss_pred CcccCEEEEEEcCCHHHHHHHHHHHHHHHHHcCCc------------CccccCCCCCCEEEEec
Confidence 45678899998888889999999999999987643 34455667777776544
No 20
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=21.86 E-value=4.1e+02 Score=23.34 Aligned_cols=64 Identities=13% Similarity=0.101 Sum_probs=40.0
Q ss_pred ccceeEEEEecCCChhhHHHHHHHHHHHHhhCCCEEEEEEeeeccccccccCCCCeeEE-EEEEEEeCc-chHHHHHHHh
Q 025898 58 RRHYEVVYLIHEKYEEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHY-ILMNFELEA-KWINDFKTML 135 (246)
Q Consensus 58 Mr~YEim~ILrp~~eEei~~liekv~~iI~k~GG~I~~vedwG~RrLAY~IkK~~~G~Y-vl~~F~a~p-saI~ELer~L 135 (246)
|..|-+.++. |+. . .++..+..+|.++|++|........ ...|.| ..+.|..++ ..+.+|+..|
T Consensus 6 ~~~~vLtv~c-~Dr-p---GIVa~Vs~~La~~g~NI~d~~q~~d---------~~~g~Ffmr~~~~~~~~~~~~~L~~~f 71 (286)
T 3n0v_A 6 PDTWILTADC-PSM-L---GTVDVVTRYLFEQRCYVTEHHSFDD---------RQSGRFFIRVEFRQPDDFDEAGFRAGL 71 (286)
T ss_dssp -CCEEEEEEE-ECC-T---THHHHHHHHHHHTTCEEEEEEEEEE---------TTTTEEEEEEEEECCSSCCHHHHHHHH
T ss_pred CCcEEEEEEe-CCC-C---CHHHHHHHHHHHCCCCeeeeeeecc---------CCCCeeEEEEEEecCCCCCHHHHHHHH
Confidence 5666554444 332 2 4688999999999999999988742 234444 456677653 2455555444
No 21
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=21.67 E-value=3.8e+02 Score=23.66 Aligned_cols=65 Identities=12% Similarity=0.138 Sum_probs=39.7
Q ss_pred cccceeEEEEecCCChhhHHHHHHHHHHHHhhCCCEEEEEEeeeccccccccCCCCeeEE-EEEEEEeC--c--chHHHH
Q 025898 57 RRRHYEVVYLIHEKYEEDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAYKIQKAKKAHY-ILMNFELE--A--KWINDF 131 (246)
Q Consensus 57 ~Mr~YEim~ILrp~~eEei~~liekv~~iI~k~GG~I~~vedwG~RrLAY~IkK~~~G~Y-vl~~F~a~--p--saI~EL 131 (246)
.|..|=+.++. |+. . .++..+..+|.++|++|...+.... ...|.| ..+.|..+ + ..+.+|
T Consensus 7 ~~~~~vLtv~c-~Dr-~---GIVa~Vs~~La~~g~NI~d~~q~~d---------~~~g~Ffmr~~~~~~~~~~~~~~~~L 72 (292)
T 3lou_A 7 RPHQFVLTLSC-PSA-A---GQVAAVVGLLDRHRCYVDELTVFDD---------DLSARFFVRCVFHATDDADALRVDAL 72 (292)
T ss_dssp -CCEEEEEEEE-ESC-S---CHHHHHHHHHHHTTEEEEEEEEEEE---------TTTTEEEEEEEEEECC----CCHHHH
T ss_pred CCCcEEEEEEc-CCC-C---CHHHHHHHHHHHCCCCEEeeEEEec---------CCCCceEEEEEEEccCcccCCCHHHH
Confidence 45556444333 332 2 4688999999999999999988742 233444 45667766 2 345566
Q ss_pred HHHh
Q 025898 132 KTML 135 (246)
Q Consensus 132 er~L 135 (246)
+..|
T Consensus 73 ~~~f 76 (292)
T 3lou_A 73 RREF 76 (292)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 22
>2zw2_A Putative uncharacterized protein STS178; purine metabolism, ligase; 1.55A {Sulfolobus tokodaii}
Probab=20.94 E-value=1.8e+02 Score=21.49 Aligned_cols=74 Identities=8% Similarity=0.184 Sum_probs=48.4
Q ss_pred ccceeEEEEecCCCh-hhHHHHHHHHHHHHhhCCCEEEEEEeeecccccc-ccCCCCeeEEEEEEEEeC-----cchHHH
Q 025898 58 RRHYEVVYLIHEKYE-EDVGSVNEKVQDFLREKKGRVWRLNDWGLRRLAY-KIQKAKKAHYILMNFELE-----AKWIND 130 (246)
Q Consensus 58 Mr~YEim~ILrp~~e-Eei~~liekv~~iI~k~GG~I~~vedwG~RrLAY-~IkK~~~G~Yvl~~F~a~-----psaI~E 130 (246)
|-.+.+.+-++|..- ++-+++. + ...+|-| .++.-+.|.|+.+..++. ...+..
T Consensus 5 m~~~~V~V~lK~gVlDPqG~av~-~------------------al~~LG~~~V~~VR~gK~~~l~~~~~~~~~a~~~v~~ 65 (92)
T 2zw2_A 5 LYRVELIITNKEGVRDPEGETIQ-R------------------YVVSRFSDKIIETRAGKYLVFRVNSSSQQEATELVKK 65 (92)
T ss_dssp EEEEEEEEEECTTSCCHHHHHHH-H------------------HTHHHHCTTEEEEEEEEEEEEEEECSSHHHHHHHHHH
T ss_pred cEEEEEEEEECCCCcCcHHHHHH-H------------------HHHHcCCCChhheEEEEEEEEEecCCCHHHHHHHHHH
Confidence 456788888899864 3332222 2 2233445 466677899999999875 245777
Q ss_pred HHHHhCCCCCeeEEEEEeec
Q 025898 131 FKTMLDKDEKVIRHLVIKRD 150 (246)
Q Consensus 131 Ler~Lrlde~VLR~mVVK~d 150 (246)
+-..|||-+.||-.-.+.+.
T Consensus 66 ~~~~LrLaNpVie~y~~~~~ 85 (92)
T 2zw2_A 66 LADEMRLYNPIVHKIEIRAN 85 (92)
T ss_dssp HHHHTTSSCTTTEEEEEEEE
T ss_pred HHhhccccCcceeEEEEEEE
Confidence 77888777777766555544
Done!