BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025899
(246 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WEN|A Chain A, Solution Structure Of Phd Domain In Ing1-Like Protein
Bac25079
Length = 71
Score = 115 bits (288), Expect = 2e-26, Method: Composition-based stats.
Identities = 42/61 (68%), Positives = 52/61 (85%)
Query: 177 TGMELDLPVDPNEPTYCVCNQVSYGEMVACDNPNCKIEWFHFGCVGLKEQPKGKWYCPDC 236
+G D+PVDPNEPTYC+C+QVSYGEM+ CDNP+C IEWFHF CVGL +P+GKW+CP C
Sbjct: 3 SGSSGDMPVDPNEPTYCLCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRC 62
Query: 237 A 237
+
Sbjct: 63 S 63
>pdb|2K1J|A Chain A, Plan Homeodomain Finger Of Tumour Supressor Ing4
Length = 63
Score = 112 bits (280), Expect = 2e-25, Method: Composition-based stats.
Identities = 41/63 (65%), Positives = 54/63 (85%)
Query: 181 LDLPVDPNEPTYCVCNQVSYGEMVACDNPNCKIEWFHFGCVGLKEQPKGKWYCPDCAALK 240
+D+PVDPNEPTYC+C+QVSYGEM+ CDNP+C IEWFHF CVGL +P+GKW+CP C+ +
Sbjct: 1 MDMPVDPNEPTYCLCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQER 60
Query: 241 NRR 243
++
Sbjct: 61 KKK 63
>pdb|2VNF|A Chain A, Molecular Basis Of Histone H3k4me3 Recognition By Ing4
pdb|2VNF|C Chain C, Molecular Basis Of Histone H3k4me3 Recognition By Ing4
Length = 60
Score = 112 bits (279), Expect = 3e-25, Method: Composition-based stats.
Identities = 41/57 (71%), Positives = 51/57 (89%)
Query: 181 LDLPVDPNEPTYCVCNQVSYGEMVACDNPNCKIEWFHFGCVGLKEQPKGKWYCPDCA 237
+D+PVDPNEPTYC+C+QVSYGEM+ CDNP+C IEWFHF CVGL +P+GKW+CP C+
Sbjct: 1 MDMPVDPNEPTYCLCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCS 57
>pdb|1WEU|A Chain A, Solution Structure Of Phd Domain In Ing1-Like Protein
Bac25009
Length = 91
Score = 110 bits (276), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 43/65 (66%), Positives = 52/65 (80%)
Query: 181 LDLPVDPNEPTYCVCNQVSYGEMVACDNPNCKIEWFHFGCVGLKEQPKGKWYCPDCAALK 240
LD+PVDPNEPTYC+C+QVSYGEM+ CDNP+C IEWFHF CVGL +P+GKW+CP C+
Sbjct: 27 LDMPVDPNEPTYCLCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQES 86
Query: 241 NRRKG 245
G
Sbjct: 87 GPSSG 91
>pdb|2QIC|A Chain A, Crystal Structure Of The Ing1 Phd Finger In Complex With A
Histone H3k4me3 Peptide
Length = 62
Score = 110 bits (275), Expect = 7e-25, Method: Composition-based stats.
Identities = 43/55 (78%), Positives = 47/55 (85%)
Query: 182 DLPVDPNEPTYCVCNQVSYGEMVACDNPNCKIEWFHFGCVGLKEQPKGKWYCPDC 236
DLP+DPNEPTYC+CNQVSYGEM+ CDN C IEWFHF CVGL +PKGKWYCP C
Sbjct: 3 DLPIDPNEPTYCLCNQVSYGEMIGCDNDECPIEWFHFSCVGLNHKPKGKWYCPKC 57
>pdb|2M1R|A Chain A, Phd Domain Of Ing4 N214d Mutant
Length = 63
Score = 110 bits (274), Expect = 9e-25, Method: Composition-based stats.
Identities = 40/63 (63%), Positives = 54/63 (85%)
Query: 181 LDLPVDPNEPTYCVCNQVSYGEMVACDNPNCKIEWFHFGCVGLKEQPKGKWYCPDCAALK 240
+D+PVDPNEPTYC+C+QVSYGEM+ CD+P+C IEWFHF CVGL +P+GKW+CP C+ +
Sbjct: 1 MDMPVDPNEPTYCLCHQVSYGEMIGCDDPDCSIEWFHFACVGLTTKPRGKWFCPRCSQER 60
Query: 241 NRR 243
++
Sbjct: 61 KKK 63
>pdb|1WES|A Chain A, Solution Structure Of Phd Domain In Inhibitor Of Growth
Family, Member 1-Like
Length = 71
Score = 106 bits (264), Expect = 1e-23, Method: Composition-based stats.
Identities = 40/60 (66%), Positives = 46/60 (76%)
Query: 177 TGMELDLPVDPNEPTYCVCNQVSYGEMVACDNPNCKIEWFHFGCVGLKEQPKGKWYCPDC 236
+G + +DPNEPTYC+CNQVSYGEM+ CDN C IEWFHF CV L +PKGKWYCP C
Sbjct: 3 SGSSGEFAIDPNEPTYCLCNQVSYGEMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKC 62
>pdb|1X4I|A Chain A, Solution Structure Of Phd Domain In Inhibitor Of Growth
Protein 3 (Ing3)
Length = 70
Score = 105 bits (263), Expect = 2e-23, Method: Composition-based stats.
Identities = 40/55 (72%), Positives = 43/55 (78%)
Query: 192 YCVCNQVSYGEMVACDNPNCKIEWFHFGCVGLKEQPKGKWYCPDCAALKNRRKGR 246
YC+CNQVSYGEMV CDN +C IEWFH+GCVGL E PKGKWYCP C A RR R
Sbjct: 8 YCICNQVSYGEMVGCDNQDCPIEWFHYGCVGLTEAPKGKWYCPQCTAAMKRRGSR 62
>pdb|2G6Q|A Chain A, Crystal Structure Of Ing2 Phd Domain In Complex With
H3k4me3 Peptide
Length = 62
Score = 102 bits (253), Expect = 2e-22, Method: Composition-based stats.
Identities = 39/55 (70%), Positives = 44/55 (80%)
Query: 182 DLPVDPNEPTYCVCNQVSYGEMVACDNPNCKIEWFHFGCVGLKEQPKGKWYCPDC 236
+ +DPNEPTYC+CNQVSYGEM+ CDN C IEWFHF CV L +PKGKWYCP C
Sbjct: 3 EFAIDPNEPTYCLCNQVSYGEMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKC 57
>pdb|2PNX|A Chain A, The Phd Finger Of Ing4 In Complex With An H3k4me3 Histone
Peptide
pdb|2PNX|C Chain C, The Phd Finger Of Ing4 In Complex With An H3k4me3 Histone
Peptide
Length = 55
Score = 100 bits (249), Expect = 8e-22, Method: Composition-based stats.
Identities = 36/50 (72%), Positives = 44/50 (88%)
Query: 188 NEPTYCVCNQVSYGEMVACDNPNCKIEWFHFGCVGLKEQPKGKWYCPDCA 237
NEPTYC+C+QVSYGEM+ CDNP+C IEWFHF CVGL +P+GKW+CP C+
Sbjct: 3 NEPTYCLCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCS 52
>pdb|3C6W|A Chain A, Crystal Structure Of The Ing5 Phd Finger In Complex With
H3k4me3 Peptide
pdb|3C6W|C Chain C, Crystal Structure Of The Ing5 Phd Finger In Complex With
H3k4me3 Peptide
Length = 59
Score = 97.1 bits (240), Expect = 8e-21, Method: Composition-based stats.
Identities = 37/53 (69%), Positives = 43/53 (81%)
Query: 188 NEPTYCVCNQVSYGEMVACDNPNCKIEWFHFGCVGLKEQPKGKWYCPDCAALK 240
NEPTYC+C+QVSYGEM+ CDNP+C IEWFHF CV L +PKGKW+CP C K
Sbjct: 7 NEPTYCLCHQVSYGEMIGCDNPDCPIEWFHFACVDLTTKPKGKWFCPRCVQEK 59
>pdb|2JMI|A Chain A, Nmr Solution Structure Of Phd Finger Fragment Of Yeast
Yng1 Protein In Free State
pdb|2JMJ|A Chain A, Nmr Solution Structure Of The Phd Domain From The Yeast
Yng1 Protein In Complex With H3(1-9)k4me3 Peptide
Length = 90
Score = 87.4 bits (215), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 37/56 (66%), Positives = 41/56 (73%), Gaps = 1/56 (1%)
Query: 189 EPTYCVCNQVSYGEMVACDNPNCKIEWFHFGCVGLKEQPKGKWYCP-DCAALKNRR 243
E YC C VSYG MVACDNP C EWFH+GCVGLK+ PKGKWYC DC + N+R
Sbjct: 25 EEVYCFCRNVSYGPMVACDNPACPFEWFHYGCVGLKQAPKGKWYCSKDCKEIANQR 80
>pdb|4AFL|A Chain A, The Crystal Structure Of The Ing4 Dimerization Domain
Reveals The Functional Organization Of The Ing Family Of
Chromatin Binding Proteins.
pdb|4AFL|B Chain B, The Crystal Structure Of The Ing4 Dimerization Domain
Reveals The Functional Organization Of The Ing Family Of
Chromatin Binding Proteins.
pdb|4AFL|C Chain C, The Crystal Structure Of The Ing4 Dimerization Domain
Reveals The Functional Organization Of The Ing Family Of
Chromatin Binding Proteins.
pdb|4AFL|D Chain D, The Crystal Structure Of The Ing4 Dimerization Domain
Reveals The Functional Organization Of The Ing Family Of
Chromatin Binding Proteins.
pdb|4AFL|E Chain E, The Crystal Structure Of The Ing4 Dimerization Domain
Reveals The Functional Organization Of The Ing Family Of
Chromatin Binding Proteins.
pdb|4AFL|F Chain F, The Crystal Structure Of The Ing4 Dimerization Domain
Reveals The Functional Organization Of The Ing Family Of
Chromatin Binding Proteins
Length = 104
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 57/107 (53%), Gaps = 15/107 (14%)
Query: 3 FLDEFQANLESLPNILQKKYALLRDLDKSLQEIQRQNEQRCEQEIEDLMREI----RAGN 58
+L+ + ++E+LP LQ+ + L RDLD+ ++++ EI+ L E R+ +
Sbjct: 5 YLEHYLDSIENLPFELQRNFQLXRDLDQRTEDLK--------AEIDKLATEYXSSARSLS 56
Query: 59 ITPNTSLIRFSDDALDEQKHSIRIADEKVALAVQAYDLVDTHIQQLD 105
+L++ +A + K D+KV LA Q Y+ VD HI++LD
Sbjct: 57 SEEKLALLKQIQEAYGKCKE---FGDDKVQLAXQTYEXVDKHIRRLD 100
>pdb|1WEP|A Chain A, Solution Structure Of Phd Domain In Phf8
Length = 79
Score = 38.9 bits (89), Expect = 0.003, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 190 PTYCVCNQVSYGEMVACDNPNCKIEWFHFGCVGLKEQPKGK---WYCPDCAAL 239
P YC+C Q + C+ +WFH CVG++E+ ++CPDC A+
Sbjct: 12 PVYCLCRQPYNVNHFMIECGLCQ-DWFHGSCVGIEEENAVDIDIYHCPDCEAV 63
>pdb|2K16|A Chain A, Solution Structure Of The Free Taf3 Phd Domain
pdb|2K17|A Chain A, Solution Structure Of The Taf3 Phd Domain In Complex With
A H3k4me3 Peptide
Length = 75
Score = 38.1 bits (87), Expect = 0.005, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 6/46 (13%)
Query: 195 CNQVSYGE-MVACDNPNCKIEWFHFGCVGLKEQP--KGKWYCPDCA 237
CN+ G M+ CD+ + +W+H+ CVG+ P + +W+CP CA
Sbjct: 24 CNKPDDGSPMIGCDDCD---DWYHWPCVGIMAAPPEEMQWFCPKCA 66
>pdb|1WEM|A Chain A, Solution Structure Of Phd Domain In Death Inducer-
Obliterator 1(Dio-1)
Length = 76
Score = 37.7 bits (86), Expect = 0.005, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 33/68 (48%), Gaps = 12/68 (17%)
Query: 186 DPNEPTYCVCNQVSYGE-MVACDNPNCKIEWFHFGCVGLKE------QPKGKWY-CPDCA 237
DPN YC+C Q M+ CD C+ EWFH CVG+ E + G+ Y CP+C
Sbjct: 13 DPN-ALYCICRQPHNNRFMICCDR--CE-EWFHGDCVGISEARGRLLERNGEDYICPNCT 68
Query: 238 ALKNRRKG 245
L G
Sbjct: 69 ILSGPSSG 76
>pdb|3KQI|A Chain A, Crystal Structure Of Phf2 Phd Domain Complexed With
H3k4me3 Peptide
Length = 75
Score = 37.7 bits (86), Expect = 0.005, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 16/66 (24%)
Query: 190 PTYCVCNQVSYGE---MVACDNPNCKIEWFHFGCVGLKEQPKGK---WYCPDC------A 237
P YCVC ++ Y M+ CD CK +WFH CVG++E+ ++CP+C +
Sbjct: 10 PVYCVC-RLPYDVTRFMIECDA--CK-DWFHGSCVGVEEEEAPDIDIYHCPNCEKTHGKS 65
Query: 238 ALKNRR 243
LK +R
Sbjct: 66 TLKKKR 71
>pdb|1WEW|A Chain A, Solution Structure Of Phd Domain In Dna-Binding Family
Protein Aam98074
Length = 78
Score = 37.7 bits (86), Expect = 0.006, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 184 PVDPNEPTYCVC-NQVSYGEMVACDNPNCKIEWFHFGCVGLKEQP 227
P P CVC N + M+ C++P C + W H GCV L ++P
Sbjct: 10 PFQPEIKVRCVCGNSLETDSMIQCEDPRCHV-WQHVGCVILPDKP 53
>pdb|3KV5|D Chain D, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With N-Oxalylglycine
pdb|3KV5|A Chain A, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With N-Oxalylglycine
pdb|3KV6|A Chain A, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With Alpha-Ketoglutarate
pdb|3KV6|D Chain D, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With Alpha-Ketoglutarate
Length = 488
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 10/57 (17%)
Query: 191 TYCVCNQVSYGE---MVACDNPNCKIEWFHFGCVGLKEQPKGK---WYCPDCAALKN 241
YCVC Q Y M+ CD CK +WFH CVG++E ++CP+CA L
Sbjct: 38 VYCVCRQ-PYDVNRFMIECDI--CK-DWFHGSCVGVEEHHAVDIDLYHCPNCAVLHG 90
>pdb|3KV4|A Chain A, Structure Of Phf8 In Complex With Histone H3
Length = 447
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 15/67 (22%)
Query: 190 PTYCVCNQVSYGE---MVACDNPNCKIEWFHFGCVGLKEQPKGK---WYCPDCAALKN-- 241
P YC+C ++ Y M+ CD C+ +WFH CVG++E+ ++CP+C L
Sbjct: 5 PVYCLC-RLPYDVTRFMIECDM--CQ-DWFHGSCVGVEEEKAADIDLYHCPNCEVLHGPS 60
Query: 242 ---RRKG 245
+R+G
Sbjct: 61 IMKKRRG 67
>pdb|4GND|A Chain A, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
pdb|4GND|C Chain C, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
pdb|4GNE|A Chain A, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
Complexed With H3 Peptide 1-7
pdb|4GNF|A Chain A, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
Complexed With H3 Peptide 1-15
pdb|4GNG|A Chain A, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
Complexed With H3k9me3 Peptide
pdb|4GNG|D Chain D, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
Complexed With H3k9me3 Peptide
Length = 107
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 201 GEMVACDNPNCKIEWFHFGCVGLKEQPKGKWYCP 234
GE+V CD +C + +H C+ L + P GKW CP
Sbjct: 25 GELVMCDKKDCP-KAYHLLCLNLTQPPYGKWECP 57
>pdb|1MM2|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b
pdb|2L75|A Chain A, Solution Structure Of Chd4-Phd2 In Complex With H3k9me3
Length = 61
Score = 29.6 bits (65), Expect = 1.6, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 9/47 (19%)
Query: 201 GEMVACDN-PNCKIEWFHFGCVG--LKEQPKGKWYCPDCA--ALKNR 242
GE++ CD P+ +H C+ L E P G+W CP C ALK +
Sbjct: 19 GELLCCDTCPSS----YHIHCLNPPLPEIPNGEWLCPRCTCPALKGK 61
>pdb|1MM3|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b With C-
Terminal Loop Replaced By Corresponding Loop From Wstf
Length = 61
Score = 29.6 bits (65), Expect = 1.8, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 9/47 (19%)
Query: 201 GEMVACDN-PNCKIEWFHFGCV--GLKEQPKGKWYCPDCA--ALKNR 242
GE++ CD P+ +H C+ L E P G+W CP C ALK +
Sbjct: 19 GELLCCDTCPSS----YHIHCLRPALYEVPDGEWQCPRCTCPALKGK 61
>pdb|1XWH|A Chain A, Nmr Structure Of The First Phd Finger Of Autoimmune
Regulator Protein (Aire1): Insights Into Apeced
pdb|2KE1|A Chain A, Molecular Basis Of Non-Modified Histone H3 Tail
Recognition By The First Phd Finger Of Autoimmune
Regulator
Length = 66
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 5/38 (13%)
Query: 201 GEMVACDNPNCKIEWFHFGCVG--LKEQPKGKWYCPDC 236
GE++ CD FH C+ L+E P G W C C
Sbjct: 18 GELICCDG---CPRAFHLACLSPPLREIPSGTWRCSSC 52
>pdb|2PUY|A Chain A, Crystal Structure Of The Bhc80 Phd Finger
pdb|2PUY|B Chain B, Crystal Structure Of The Bhc80 Phd Finger
Length = 60
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Query: 201 GEMVACDNPNCKIEWFHFGCVG--LKEQPKGKWYCPDC 236
G+++ CD + +H C+ LK PKG W CP C
Sbjct: 15 GQLLMCDTCS---RVYHLDCLDPPLKTIPKGMWICPRC 49
>pdb|1R8J|A Chain A, Crystal Structure Of Circadian Clock Protein Kaia From
Synechococcus Elongatus
pdb|1R8J|B Chain B, Crystal Structure Of Circadian Clock Protein Kaia From
Synechococcus Elongatus
Length = 289
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 10/93 (10%)
Query: 26 RDLDKSLQEIQRQNEQRCEQEIEDLMREIRAGNITPNTSLIRFSDDALDEQKHSIRIADE 85
RD D+ L+ + Q+ Q ++ REI +PN++L + ++D + AD
Sbjct: 178 RDPDRFLRNLPAYESQKLHQAMQTSYREIVLSYFSPNSNL----NQSIDNFVNMAFFADV 233
Query: 86 KVALAVQAYDLVDTHIQQLDQYLKNFDEELRRE 118
V +V+ H++ +D++ K E R E
Sbjct: 234 PVT------KVVEIHMELMDEFAKKLRVEGRSE 260
>pdb|4G86|A Chain A, Crystal Structure Of The Redox-Active Cofactor Dbmib Bound
To The Full Length Circadian Clock Protein Kaia From
Synechococcus Elongatus
pdb|4G86|B Chain B, Crystal Structure Of The Redox-Active Cofactor Dbmib Bound
To The Full Length Circadian Clock Protein Kaia From
Synechococcus Elongatus
Length = 284
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 10/93 (10%)
Query: 26 RDLDKSLQEIQRQNEQRCEQEIEDLMREIRAGNITPNTSLIRFSDDALDEQKHSIRIADE 85
RD D+ L+ + Q+ Q ++ REI +PN++L + ++D + AD
Sbjct: 173 RDPDRFLRNLPAYESQKLHQAMQTSYREIVLSYFSPNSNL----NQSIDNFVNMAFFADV 228
Query: 86 KVALAVQAYDLVDTHIQQLDQYLKNFDEELRRE 118
V +V+ H++ +D++ K E R E
Sbjct: 229 PVT------KVVEIHMELMDEFAKKLRVEGRSE 255
>pdb|2YQL|A Chain A, Solution Structure Of The Phd Domain In Phd Finger Protein
21a
Length = 56
Score = 28.9 bits (63), Expect = 2.7, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Query: 201 GEMVACDNPNCKIEWFHFGCVG--LKEQPKGKWYCPDC 236
G+++ CD + +H C+ LK PKG W CP C
Sbjct: 19 GQLLMCDTCS---RVYHLDCLDPPLKTIPKGMWICPRC 53
>pdb|2KFT|A Chain A, Nmr Solution Structure Of The First Phd Finger Domain Of
Human Autoimmune Regulator (Aire) In Complex With
Histone H3(1-20cys) Peptide
Length = 56
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 5/38 (13%)
Query: 201 GEMVACDNPNCKIEWFHFGCVG--LKEQPKGKWYCPDC 236
GE++ CD FH C+ L+E P G W C C
Sbjct: 15 GELICCDGCP---RAFHLACLSPPLREIPSGTWRCSSC 49
>pdb|2Z1Q|A Chain A, Crystal Structure Of Acyl Coa Dehydrogenase
pdb|2Z1Q|B Chain B, Crystal Structure Of Acyl Coa Dehydrogenase
Length = 577
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 27 DLDKSLQEIQRQNEQRCEQEIEDLMREIRAGNITPNTSLIR 67
D D+S++EI R E+E+ L+ + G + N L+R
Sbjct: 27 DFDESVKEIARTTRTFVEREVLPLLERMEHGELELNVPLMR 67
>pdb|3DIN|A Chain A, Crystal Structure Of The Protein-Translocation Complex
Formed By The Secy Channel And The Seca Atpase
pdb|3DIN|B Chain B, Crystal Structure Of The Protein-Translocation Complex
Formed By The Secy Channel And The Seca Atpase
Length = 871
Score = 28.1 bits (61), Expect = 4.6, Method: Composition-based stats.
Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 29/130 (22%)
Query: 10 NLESLPNILQKKYALLRDLDK----SLQEIQR-------QNEQRCEQEI-EDLMREIRAG 57
++ESL N L A L DLD+ S +E+ + QR +QEI ED + IR
Sbjct: 694 DIESLKNSLSFFPAGLFDLDEKQFSSSEELHDYLFNRLWEEYQRKKQEIGEDYRKVIR-- 751
Query: 58 NITPNTSLIRFSDDA----LDEQKHSIRIADEKVALAVQAYDLVDTHIQQLDQYLKNFDE 113
++R DD L+E +H K A+ +++Y D ++ + FDE
Sbjct: 752 -----FLMLRIIDDHWRRYLEEVEHV------KEAVQLRSYGQKDPIVEFKKETYYMFDE 800
Query: 114 ELRRERDSVA 123
+RR D++A
Sbjct: 801 MMRRINDTIA 810
>pdb|3JUX|A Chain A, Structure Of The Translocation Atpase Seca From Thermotoga
Maritima
Length = 822
Score = 28.1 bits (61), Expect = 4.7, Method: Composition-based stats.
Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 29/130 (22%)
Query: 10 NLESLPNILQKKYALLRDLDK----SLQEIQR-------QNEQRCEQEI-EDLMREIRAG 57
++ESL N L A L DLD+ S +E+ + QR +QEI ED + IR
Sbjct: 694 DIESLKNSLSFFPAGLFDLDEKQFSSSEELHDYLFNRLWEEYQRKKQEIGEDYRKVIR-- 751
Query: 58 NITPNTSLIRFSDDA----LDEQKHSIRIADEKVALAVQAYDLVDTHIQQLDQYLKNFDE 113
++R DD L+E +H K A+ +++Y D ++ + FDE
Sbjct: 752 -----FLMLRIIDDHWRRYLEEVEHV------KEAVQLRSYGQKDPIVEFKKETYYMFDE 800
Query: 114 ELRRERDSVA 123
+RR D++A
Sbjct: 801 MMRRINDTIA 810
>pdb|3R0J|A Chain A, Structure Of Phop From Mycobacterium Tuberculosis
pdb|3R0J|B Chain B, Structure Of Phop From Mycobacterium Tuberculosis
Length = 250
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 50 LMREIRAGNITPNTSLIRFSDDALDEQKHSIRIADEKVALAVQAYDLV 97
++R GN P + F+D LDE+ H + A + V+L+ + L+
Sbjct: 138 ILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLL 185
>pdb|3N9L|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide And
Nog
pdb|3N9M|A Chain A, Cekdm7a From C.Elegans, Alone
pdb|3N9M|C Chain C, Cekdm7a From C.Elegans, Alone
pdb|3N9N|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3k9me2 Peptide
And Nog
pdb|3N9O|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide,
H3k9me2 Peptide And Nog
pdb|3N9P|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3k27me2 Peptide
And Nog
pdb|3N9Q|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide,
H3k27me2 Peptide And Nog
pdb|3PUQ|A Chain A, Cekdm7a From C.Elegans, Complex With Alpha-Kg
pdb|3PUQ|C Chain C, Cekdm7a From C.Elegans, Complex With Alpha-Kg
pdb|3PUR|A Chain A, Cekdm7a From C.Elegans, Complex With D-2-Hg
pdb|3PUR|C Chain C, Cekdm7a From C.Elegans, Complex With D-2-Hg
Length = 528
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 6/39 (15%)
Query: 202 EMVACDNPNCKIEWFHFGCVGLKE---QPKGKWYCPDCA 237
+ + CD+ C+ W+HF C GL++ K++CP C
Sbjct: 57 QWIGCDS--CQT-WYHFLCSGLEQFEYYLYEKFFCPKCV 92
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,074,228
Number of Sequences: 62578
Number of extensions: 214777
Number of successful extensions: 753
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 730
Number of HSP's gapped (non-prelim): 52
length of query: 246
length of database: 14,973,337
effective HSP length: 96
effective length of query: 150
effective length of database: 8,965,849
effective search space: 1344877350
effective search space used: 1344877350
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)