Query 025901
Match_columns 246
No_of_seqs 204 out of 577
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 20:11:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025901.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025901hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3chm_A COP9 signalosome comple 100.0 1.4E-51 4.8E-56 346.6 14.4 168 2-169 2-169 (169)
2 4b4t_O 26S proteasome regulato 100.0 2.2E-35 7.4E-40 276.3 7.4 170 22-193 210-389 (393)
3 3txn_A 26S proteasome regulato 99.4 3E-12 1E-16 119.9 11.6 159 24-187 221-389 (394)
4 4b4t_P 26S proteasome regulato 98.9 1.4E-09 4.8E-14 102.7 8.6 161 24-197 259-435 (445)
5 4b4t_R RPN7, 26S proteasome re 98.7 6.8E-08 2.3E-12 90.6 11.2 134 26-161 250-397 (429)
6 3t5x_A PCI domain-containing p 98.5 3.5E-08 1.2E-12 84.4 3.9 97 60-157 81-193 (203)
7 4b4t_Q 26S proteasome regulato 98.4 2.2E-07 7.6E-12 83.2 6.1 123 59-193 296-428 (434)
8 1ufm_A COP9 complex subunit 4; 98.3 1.9E-06 6.6E-11 63.9 7.2 62 94-157 15-76 (84)
9 4b4t_S RPN3, 26S proteasome re 98.0 3.6E-06 1.2E-10 81.2 3.8 93 60-153 343-444 (523)
10 3t5v_B Nuclear mRNA export pro 97.5 7E-05 2.4E-09 71.2 5.3 95 62-157 299-429 (455)
11 4b0z_A RPN12, 26S proteasome r 93.3 0.13 4.3E-06 44.1 5.9 100 34-134 108-214 (229)
12 1wi9_A Protein C20ORF116 homol 92.7 0.15 5.1E-06 36.4 4.5 54 100-155 12-65 (72)
13 2hzt_A Putative HTH-type trans 84.6 9.5 0.00032 27.8 9.7 69 107-180 25-94 (107)
14 3df8_A Possible HXLR family tr 84.4 6 0.00021 29.4 8.5 80 94-182 27-107 (111)
15 1i1g_A Transcriptional regulat 83.1 1 3.5E-05 34.5 3.7 71 106-178 15-88 (141)
16 1qbj_A Protein (double-strande 83.0 3.4 0.00012 29.6 6.3 58 95-155 13-70 (81)
17 3r0a_A Putative transcriptiona 80.7 3.2 0.00011 31.5 5.7 81 102-188 34-118 (123)
18 1qgp_A Protein (double strande 79.8 4.4 0.00015 28.5 5.8 47 97-145 19-65 (77)
19 4a5n_A Uncharacterized HTH-typ 76.6 23 0.00077 27.4 9.7 76 96-180 28-106 (131)
20 1ub9_A Hypothetical protein PH 75.4 14 0.00047 25.8 7.6 39 107-147 28-66 (100)
21 2cg4_A Regulatory protein ASNC 75.2 4.2 0.00014 31.6 5.1 47 100-148 13-62 (152)
22 2d1h_A ST1889, 109AA long hypo 75.0 18 0.0006 25.4 8.1 72 104-182 31-105 (109)
23 4b4t_T 26S proteasome regulato 74.1 7.3 0.00025 34.0 6.8 95 38-132 118-222 (274)
24 2cfx_A HTH-type transcriptiona 73.6 3.6 0.00012 31.7 4.3 47 100-148 10-59 (144)
25 2p5v_A Transcriptional regulat 73.6 3.7 0.00013 32.3 4.4 42 105-148 20-64 (162)
26 2dbb_A Putative HTH-type trans 73.2 3.9 0.00013 31.6 4.4 47 100-148 14-63 (151)
27 2pn6_A ST1022, 150AA long hypo 73.1 8.4 0.00029 29.6 6.3 48 99-148 7-57 (150)
28 2kko_A Possible transcriptiona 73.0 16 0.00055 26.7 7.6 63 108-180 37-99 (108)
29 3t8r_A Staphylococcus aureus C 72.8 5.6 0.00019 31.1 5.2 57 95-154 14-70 (143)
30 2ia0_A Putative HTH-type trans 72.7 3.4 0.00012 33.2 4.1 42 105-148 27-71 (171)
31 2gxg_A 146AA long hypothetical 72.5 18 0.00061 26.8 8.0 43 107-151 48-90 (146)
32 2e1c_A Putative HTH-type trans 72.2 2.8 9.6E-05 33.8 3.4 67 105-177 37-110 (171)
33 3bpv_A Transcriptional regulat 72.1 13 0.00044 27.4 7.0 46 107-154 41-86 (138)
34 3lwf_A LIN1550 protein, putati 72.0 7.3 0.00025 31.2 5.8 64 87-153 22-85 (159)
35 1lj9_A Transcriptional regulat 71.4 14 0.00047 27.5 7.1 42 108-151 42-83 (144)
36 1yyv_A Putative transcriptiona 70.6 20 0.00067 27.4 7.9 80 94-180 35-115 (131)
37 2fsw_A PG_0823 protein; alpha- 70.4 18 0.00061 26.2 7.3 66 107-179 36-104 (107)
38 2cyy_A Putative HTH-type trans 69.7 3.3 0.00011 32.2 3.2 42 100-143 12-53 (151)
39 2y75_A HTH-type transcriptiona 68.2 14 0.00048 27.7 6.5 49 94-144 11-59 (129)
40 1z7u_A Hypothetical protein EF 68.1 32 0.0011 25.1 8.9 68 108-180 34-102 (112)
41 3cuo_A Uncharacterized HTH-typ 68.0 16 0.00054 25.4 6.4 41 105-147 34-74 (99)
42 2a61_A Transcriptional regulat 66.7 9.6 0.00033 28.4 5.3 46 107-154 45-90 (145)
43 2fbh_A Transcriptional regulat 66.4 21 0.00071 26.4 7.2 45 106-152 49-93 (146)
44 3i4p_A Transcriptional regulat 66.3 6.1 0.00021 31.2 4.2 48 99-148 7-57 (162)
45 2oqg_A Possible transcriptiona 65.8 34 0.0012 24.4 9.7 37 108-146 33-69 (114)
46 4aik_A Transcriptional regulat 64.0 25 0.00086 27.0 7.4 64 87-157 29-92 (151)
47 3f6o_A Probable transcriptiona 62.6 27 0.00094 25.7 7.1 38 108-147 30-67 (118)
48 3kp7_A Transcriptional regulat 62.5 13 0.00045 28.1 5.4 44 106-151 48-93 (151)
49 4hbl_A Transcriptional regulat 62.4 20 0.00067 27.1 6.4 44 107-152 53-96 (149)
50 1ylf_A RRF2 family protein; st 62.2 11 0.00037 29.4 5.0 48 95-145 17-64 (149)
51 1oyi_A Double-stranded RNA-bin 61.4 14 0.00048 26.6 5.0 45 93-143 18-62 (82)
52 1sfx_A Conserved hypothetical 60.5 39 0.0013 23.4 8.6 39 107-147 32-70 (109)
53 3deu_A Transcriptional regulat 59.7 25 0.00087 27.2 6.8 48 107-156 66-113 (166)
54 2v79_A DNA replication protein 59.0 55 0.0019 25.2 8.5 79 87-179 30-111 (135)
55 2f2e_A PA1607; transcription f 59.0 34 0.0012 26.4 7.4 66 107-179 35-101 (146)
56 3g3z_A NMB1585, transcriptiona 58.9 39 0.0013 25.0 7.5 41 109-151 45-85 (145)
57 3s2w_A Transcriptional regulat 58.8 17 0.00058 27.7 5.5 47 107-155 62-108 (159)
58 3k0l_A Repressor protein; heli 58.8 20 0.0007 27.4 6.0 47 108-156 59-105 (162)
59 3bja_A Transcriptional regulat 57.8 15 0.00052 26.9 4.9 43 107-151 45-87 (139)
60 3jth_A Transcription activator 56.5 33 0.0011 24.0 6.4 39 108-148 35-73 (98)
61 1xd7_A YWNA; structural genomi 56.4 17 0.00059 28.0 5.2 34 111-146 25-58 (145)
62 2vn2_A DNAD, chromosome replic 56.4 26 0.00089 26.5 6.1 81 87-179 30-111 (128)
63 3k69_A Putative transcription 56.3 18 0.00062 28.8 5.4 47 95-144 15-61 (162)
64 1uly_A Hypothetical protein PH 55.9 81 0.0028 25.6 12.3 35 108-144 32-66 (192)
65 1xn7_A Hypothetical protein YH 55.6 14 0.00047 26.2 4.0 42 99-142 6-47 (78)
66 2eth_A Transcriptional regulat 55.6 29 0.00098 26.2 6.3 42 108-151 57-98 (154)
67 2htj_A P fimbrial regulatory p 55.5 30 0.001 23.6 5.9 36 107-144 12-47 (81)
68 2rdp_A Putative transcriptiona 54.9 24 0.00083 26.3 5.7 44 108-153 55-98 (150)
69 3gpv_A Transcriptional regulat 54.3 52 0.0018 25.6 7.7 99 109-222 16-134 (148)
70 3nrv_A Putative transcriptiona 53.6 16 0.00054 27.3 4.4 43 107-151 52-94 (148)
71 3oop_A LIN2960 protein; protei 53.2 20 0.00067 26.7 4.9 58 86-151 34-91 (143)
72 1s3j_A YUSO protein; structura 52.5 27 0.00092 26.1 5.7 43 107-151 49-91 (155)
73 3hsr_A HTH-type transcriptiona 52.0 32 0.0011 25.5 6.0 47 106-154 47-93 (140)
74 2w25_A Probable transcriptiona 51.7 19 0.00063 27.6 4.6 42 105-148 17-61 (150)
75 3cdh_A Transcriptional regulat 51.5 21 0.00073 26.9 4.9 44 106-151 54-97 (155)
76 3cjn_A Transcriptional regulat 51.3 50 0.0017 24.9 7.1 43 107-151 64-106 (162)
77 3eco_A MEPR; mutlidrug efflux 50.9 40 0.0014 24.7 6.3 45 108-154 46-90 (139)
78 2heo_A Z-DNA binding protein 1 50.3 17 0.00057 24.5 3.6 45 95-143 13-57 (67)
79 3bj6_A Transcriptional regulat 48.7 38 0.0013 25.2 5.9 42 108-151 53-94 (152)
80 2zqm_A Prefoldin beta subunit 48.2 48 0.0017 24.3 6.4 59 154-226 55-113 (117)
81 2k02_A Ferrous iron transport 48.2 15 0.00051 26.7 3.3 44 99-144 6-49 (87)
82 2p4w_A Transcriptional regulat 46.5 1.2E+02 0.0041 24.8 13.7 38 108-147 27-64 (202)
83 2fbi_A Probable transcriptiona 46.2 82 0.0028 22.8 7.4 45 108-154 49-93 (142)
84 2nnn_A Probable transcriptiona 45.5 46 0.0016 24.2 5.9 60 86-153 35-94 (140)
85 2jt1_A PEFI protein; solution 45.3 18 0.0006 25.5 3.2 34 107-142 22-55 (77)
86 2pg4_A Uncharacterized protein 45.3 32 0.0011 24.1 4.7 45 96-142 16-62 (95)
87 2x4h_A Hypothetical protein SS 45.3 49 0.0017 24.5 6.0 55 86-144 10-64 (139)
88 3gp4_A Transcriptional regulat 44.7 71 0.0024 24.7 7.0 28 110-143 3-30 (142)
89 3pqk_A Biofilm growth-associat 44.6 63 0.0022 22.7 6.3 39 108-148 35-73 (102)
90 1u2w_A CADC repressor, cadmium 44.6 30 0.001 25.7 4.7 38 107-146 54-91 (122)
91 1ku9_A Hypothetical protein MJ 43.3 92 0.0032 22.6 11.0 61 87-154 24-85 (152)
92 2fa5_A Transcriptional regulat 42.4 36 0.0012 25.7 5.0 43 107-151 61-103 (162)
93 1r1u_A CZRA, repressor protein 41.9 41 0.0014 24.1 5.0 37 108-146 38-74 (106)
94 1rz4_A Eukaryotic translation 41.2 1.6E+02 0.0054 24.7 9.6 76 57-132 97-175 (226)
95 3boq_A Transcriptional regulat 40.8 28 0.00096 26.3 4.1 45 106-152 59-103 (160)
96 1jgs_A Multiple antibiotic res 40.1 58 0.002 23.7 5.7 44 108-153 47-90 (138)
97 1j5y_A Transcriptional regulat 40.0 56 0.0019 26.1 6.0 49 93-143 19-69 (187)
98 2hr3_A Probable transcriptiona 38.6 95 0.0032 22.7 6.8 44 107-152 48-91 (147)
99 3tgn_A ADC operon repressor AD 38.3 1.1E+02 0.0039 22.2 8.6 43 110-154 52-94 (146)
100 1z05_A Transcriptional regulat 37.8 28 0.00096 31.6 4.2 71 71-143 13-85 (429)
101 2pex_A Transcriptional regulat 37.4 81 0.0028 23.4 6.2 43 107-151 59-101 (153)
102 1z91_A Organic hydroperoxide r 37.3 33 0.0011 25.3 3.9 41 108-150 53-93 (147)
103 3bdd_A Regulatory protein MARR 36.6 56 0.0019 23.8 5.1 42 108-151 44-85 (142)
104 1tbx_A ORF F-93, hypothetical 35.1 1.1E+02 0.0038 21.1 6.5 41 107-149 20-64 (99)
105 3e6m_A MARR family transcripti 34.7 28 0.00094 26.6 3.1 43 108-152 66-108 (161)
106 3f6v_A Possible transcriptiona 33.9 1E+02 0.0036 23.8 6.5 41 107-149 69-109 (151)
107 2p7v_B Sigma-70, RNA polymeras 33.1 47 0.0016 21.7 3.7 28 107-136 23-50 (68)
108 3kor_A Possible Trp repressor; 33.0 65 0.0022 24.8 4.9 37 98-139 66-102 (119)
109 3bro_A Transcriptional regulat 32.9 1.4E+02 0.0047 21.5 7.1 41 109-151 50-90 (141)
110 2nyx_A Probable transcriptiona 32.0 1.1E+02 0.0036 23.4 6.2 44 108-153 58-101 (168)
111 3fm5_A Transcriptional regulat 31.6 64 0.0022 24.0 4.8 49 104-154 49-97 (150)
112 1ku3_A Sigma factor SIGA; heli 31.5 50 0.0017 21.9 3.7 28 107-136 28-55 (73)
113 1tc3_C Protein (TC3 transposas 31.4 38 0.0013 19.7 2.8 22 110-132 22-43 (51)
114 1y0u_A Arsenical resistance op 30.1 74 0.0025 22.2 4.6 35 108-144 42-76 (96)
115 1q1h_A TFE, transcription fact 29.7 40 0.0014 24.2 3.1 38 105-144 29-66 (110)
116 3c57_A Two component transcrip 29.7 1.1E+02 0.0038 21.5 5.5 27 108-136 41-67 (95)
117 2k6x_A Sigma-A, RNA polymerase 29.6 35 0.0012 23.4 2.6 39 100-139 14-56 (72)
118 3ech_A MEXR, multidrug resista 28.9 42 0.0014 24.8 3.2 60 86-153 34-93 (142)
119 1tty_A Sigma-A, RNA polymerase 28.3 60 0.0021 22.4 3.8 29 106-136 35-63 (87)
120 4i0x_B ESAT-6-like protein MAB 28.1 1.6E+02 0.0056 20.9 6.6 60 162-221 11-77 (103)
121 3f3x_A Transcriptional regulat 27.9 1.3E+02 0.0043 22.0 5.9 44 111-156 52-95 (144)
122 3hug_A RNA polymerase sigma fa 27.9 50 0.0017 23.0 3.3 27 108-136 52-78 (92)
123 3t5v_A Nuclear mRNA export pro 27.3 52 0.0018 29.2 4.0 61 72-132 177-247 (316)
124 2jsc_A Transcriptional regulat 27.2 1E+02 0.0036 22.4 5.2 38 108-147 33-70 (118)
125 2qlz_A Transcription factor PF 26.8 66 0.0022 27.2 4.4 45 106-155 175-219 (232)
126 2bv6_A MGRA, HTH-type transcri 26.4 90 0.0031 22.7 4.7 43 107-151 49-91 (142)
127 3u2r_A Regulatory protein MARR 26.3 2.1E+02 0.0071 21.5 8.1 49 107-157 60-108 (168)
128 3t72_q RNA polymerase sigma fa 26.1 61 0.0021 23.6 3.6 28 107-136 37-64 (99)
129 2l16_A SEC-independent protein 25.4 50 0.0017 23.4 2.8 32 161-192 20-51 (78)
130 1eij_A Hypothetical protein MT 25.2 30 0.001 24.9 1.6 23 124-147 36-58 (80)
131 2qvo_A Uncharacterized protein 25.1 1.4E+02 0.0049 20.6 5.4 47 106-154 27-73 (95)
132 2frh_A SARA, staphylococcal ac 25.0 83 0.0028 23.1 4.2 65 86-156 34-98 (127)
133 2eqb_B RAB guanine nucleotide 24.3 2.2E+02 0.0074 21.0 8.1 27 194-220 66-92 (97)
134 2qww_A Transcriptional regulat 24.0 70 0.0024 23.7 3.7 42 108-151 54-97 (154)
135 2fh0_A Hypothetical 16.0 kDa p 23.4 31 0.0011 24.8 1.4 23 124-147 34-56 (81)
136 1mgt_A MGMT, protein (O6-methy 23.4 2.1E+02 0.0071 23.2 6.6 63 62-128 63-127 (174)
137 3nqo_A MARR-family transcripti 23.3 1.6E+02 0.0054 23.0 5.9 65 86-157 38-103 (189)
138 3ulq_B Transcriptional regulat 23.2 94 0.0032 21.9 4.1 40 84-132 27-66 (90)
139 1r1t_A Transcriptional repress 23.1 1.9E+02 0.0063 21.3 5.9 37 108-146 58-94 (122)
140 1je8_A Nitrate/nitrite respons 23.0 1.1E+02 0.0038 20.8 4.3 26 109-136 36-61 (82)
141 2wte_A CSA3; antiviral protein 22.9 1.1E+02 0.0039 25.8 5.2 45 107-155 164-208 (244)
142 2o8x_A Probable RNA polymerase 22.9 1.5E+02 0.0052 18.7 6.7 26 109-136 31-56 (70)
143 1on2_A Transcriptional regulat 22.0 68 0.0023 23.8 3.3 41 102-144 15-55 (142)
144 2lfw_A PHYR sigma-like domain; 22.0 65 0.0022 24.6 3.2 27 108-136 108-134 (157)
145 3swk_A Vimentin; cytoskeleton, 21.9 2.2E+02 0.0074 20.2 8.4 55 166-220 22-79 (86)
146 3fx7_A Putative uncharacterize 21.7 1.2E+02 0.0042 22.3 4.4 58 162-222 6-63 (94)
147 3fav_A ESAT-6-like protein ESX 21.4 2.1E+02 0.0073 19.9 5.8 59 162-220 7-70 (101)
148 1r8e_A Multidrug-efflux transp 21.4 3.4E+02 0.012 22.3 8.4 100 108-219 4-115 (278)
149 1r7j_A Conserved hypothetical 20.9 2.3E+02 0.0078 20.1 10.0 33 110-144 21-53 (95)
150 2jpc_A SSRB; DNA binding prote 20.9 84 0.0029 19.6 3.1 23 109-132 13-35 (61)
151 1fse_A GERE; helix-turn-helix 20.7 1.4E+02 0.0049 19.1 4.4 41 83-132 8-48 (74)
152 1txp_A HnRNP C, heterogeneous 20.2 1.3E+02 0.0046 17.1 3.4 23 168-190 2-24 (28)
No 1
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}
Probab=100.00 E-value=1.4e-51 Score=346.63 Aligned_cols=168 Identities=79% Similarity=1.223 Sum_probs=158.7
Q ss_pred chhHHHHHHHHHHHHhcccccHHHHHHHHHHHhcCCCcccchhhhcCchhhhccCCCchHHHHHHHHHhcCChhhHhhhh
Q 025901 2 DIEQRQAELIDHFVKQASNQKGAALGSVIVEATSQPSLFAFSEILAVPNIAEFEGTENSKYLDMLRLFAHGTWSDYKNNA 81 (246)
Q Consensus 2 ~~~~~~~~~l~~f~~lak~a~~~aa~~li~~AL~~p~vf~F~eLL~~p~v~~L~~~~~~~~~~LL~iFa~Gt~~dy~~~~ 81 (246)
++|+++.++||||+.+||++++++|+++|.+||.+|++|+|||||.+|+|++|++++++|+++||++|++|||.+|.++.
T Consensus 2 ~~~~~~~~~l~~f~~la~~~~~~~a~~li~~Al~~p~vf~F~eLL~~p~v~~L~~~~~~~~~~LL~iF~~G~~~~y~~~~ 81 (169)
T 3chm_A 2 DIEQKQAEIIDQLVKRASTCKSEALGPLIIEATSHPSLFAFSEILALPNVAQLEGTTDSVYLDLLRLFAHGTWGDYKCNA 81 (169)
T ss_dssp --CCCHHHHHHHHHHHHTTSCGGGHHHHHHHHHHCTTCCCCHHHHTCHHHHTTTTSTTHHHHHHHHHHHHCCHHHHHHHG
T ss_pred chhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhcCCCeeehHHHhCChHHHHhcCCChhHHHHHHHHHhcCCHHHHHHhH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcchHHHHHHHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEeecCCC
Q 025901 82 GHLPQLVPDQVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRD 161 (246)
Q Consensus 82 ~~l~~L~~~~~~KLr~LtllsLa~~~k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkIDQ~~~~v~V~~~~~Rd 161 (246)
+.+|.|++.+.+|||+|||++||..+++|||++|+++|+|+|+++||+||||+||+.|||+|||||++++|+|+|++||+
T Consensus 82 ~~~p~L~~~~~~KlrlLtL~sLa~~~~~lsy~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkiDQ~~~~v~V~~~~~R~ 161 (169)
T 3chm_A 82 TRLPHLSPDQILKLKQLTVLTLAESNKVLPYDTLMVELDVSNVRELEDFLINECMYAGIVRGKLDQLKRCFEVPFAAGRD 161 (169)
T ss_dssp GGSCCCCHHHHHHHHHHHHHHHHHHCSEEEHHHHHHHHTCCSHHHHHHHHHHTHHHHTSEEEEEETTTTEEEEEEECCTT
T ss_pred HhCcchHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCHHHHHHHHHHHHHHhCCeEEEEcCcCCEEEEEeecCCc
Confidence 89999999999999999999999999999999999999999999999999988999999999999999999999999999
Q ss_pred CCCCcHHH
Q 025901 162 LRPGQLGS 169 (246)
Q Consensus 162 l~~~q~~~ 169 (246)
|+++||++
T Consensus 162 l~~~qi~~ 169 (169)
T 3chm_A 162 LRPGQLGN 169 (169)
T ss_dssp CCC-----
T ss_pred cCHHhccC
Confidence 99999964
No 2
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-35 Score=276.28 Aligned_cols=170 Identities=14% Similarity=0.327 Sum_probs=118.7
Q ss_pred cHHHHHHHHHHHhcCCCcccchhhhcCchhhhccC-CCchHHHHHHHHHhcCChhhHhh----hhCCCCCcchHH---HH
Q 025901 22 KGAALGSVIVEATSQPSLFAFSEILAVPNIAEFEG-TENSKYLDMLRLFAHGTWSDYKN----NAGHLPQLVPDQ---VL 93 (246)
Q Consensus 22 ~~~aa~~li~~AL~~p~vf~F~eLL~~p~v~~L~~-~~~~~~~~LL~iFa~Gt~~dy~~----~~~~l~~L~~~~---~~ 93 (246)
+...++.++..||.+|++|+||+|+.+|.+++|++ +++.|+++||++|++||+.+|.+ +.+.+|.|.+.+ .+
T Consensus 210 ~~~~a~~l~~~all~~~i~~f~eLL~~p~i~~L~~~~~~~~l~~Ll~~f~~g~~~~f~~~~~~~~~~~~~l~~~~~~l~~ 289 (393)
T 4b4t_O 210 RQQLAYDLSISALLGDKIYNFGELLHHPIMETIVNDSNYDWLFQLLNALTVGDFDKFDSLIKVQISKIPILAQHESFLRQ 289 (393)
T ss_dssp HHHHHHHHHHHHHHCCSSCSTHHHHHSCCTTSSCSSSSTTHHHHHHHHHHHTCHHHHHHHCCHHHHHSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCChHHHhCChHHHHhhcCCchHHHHHHHHHHhcCCHHHHHHHHHHhhhhCcchhhhHHHHHH
Confidence 45679999999999999999999999999999975 56999999999999999999976 345667776543 68
Q ss_pred HHHHHHhhhccc--CCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEeecCCCCCCCcHHHHH
Q 025901 94 KLKQLTVLTLAE--TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQLGSMI 171 (246)
Q Consensus 94 KLr~LtllsLa~--~~k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkIDQ~~~~v~V~~~~~Rdl~~~q~~~l~ 171 (246)
|+|.++++.|+. +++.|||++|+++|+|+ +++||+||| +||+.|+|+|+|||++++|+|+|++||+|+++||..|.
T Consensus 290 kirll~l~~l~~~~~~~~i~f~~ia~~l~i~-~~evE~lli-~aI~~glI~GkIDQv~~~v~v~~~~pR~~~~~q~~~l~ 367 (393)
T 4b4t_O 290 KICLMTLIETVFVKNIRMLSFEDISKATHLP-KDNVEHLVM-RAISLGLLKGSIDQVNELVTISWVQPRIISGDQITKMK 367 (393)
T ss_dssp HHHHHHHHHHHCSSSCCCEEHHHHHHHHTCC-HHHHHHHHH-HHHHHSCSSSCEETTTTEECC-----------------
T ss_pred HHHHHHHHHHhccCCCCcCcHHHHHHHhCcC-HHHHHHHHH-HHHHcCCEEEEEcCCCCEEEEEeccCCCCCHHHHHHHH
Confidence 999999999885 57899999999999997 999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025901 172 QTLSNWLTTSDNLLISIQEKIK 193 (246)
Q Consensus 172 ~~L~~W~~~~~~vl~~Ie~~i~ 193 (246)
++|..|+++|++++..|+++..
T Consensus 368 ~~L~~W~~~v~~l~~~ve~~~~ 389 (393)
T 4b4t_O 368 DRLVEWNDQVEKLGKKMEARGQ 389 (393)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999998754
No 3
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=99.36 E-value=3e-12 Score=119.92 Aligned_cols=159 Identities=11% Similarity=0.109 Sum_probs=109.9
Q ss_pred HHHHHHHHHHhcCCCcccchhhhcCchhhhccCCCchHHHHHHHHHhcCChhhHhhh----hCCCCC---cc---hHHHH
Q 025901 24 AALGSVIVEATSQPSLFAFSEILAVPNIAEFEGTENSKYLDMLRLFAHGTWSDYKNN----AGHLPQ---LV---PDQVL 93 (246)
Q Consensus 24 ~aa~~li~~AL~~p~vf~F~eLL~~p~v~~L~~~~~~~~~~LL~iFa~Gt~~dy~~~----~~~l~~---L~---~~~~~ 93 (246)
..+.=++..+|..-+.+.+++++..|......+++..|+.+|+..|.+|++..|... .+.+.. +. ....+
T Consensus 221 ~~lkYlvL~aLl~~~r~el~~~l~~~~~~~~~~pei~~l~~L~~a~~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~ 300 (394)
T 3txn_A 221 TSLKYMLLCKIMLGQSDDVNQLVSGKLAITYSGRDIDAMKSVAEASHKRSLADFQAALKEYKKELAEDVIVQAHLGTLYD 300 (394)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHHSHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHhccccccccCCccHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 345667788888888999999999887665655557899999999999999999763 222221 11 22357
Q ss_pred HHHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEeecCCCCCCCcHHHHHHH
Q 025901 94 KLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQLGSMIQT 173 (246)
Q Consensus 94 KLr~LtllsLa~~~k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkIDQ~~~~v~V~~~~~Rdl~~~q~~~l~~~ 173 (246)
+++...++.+..+.+.|+++.|++.++++ ++++|.+|+ ++|..|.|.|+|||++++|++....+|+ ...+...+.
T Consensus 301 ~Ir~~~L~~i~~pYsrIsl~~iA~~l~ls-~~evE~~L~-~lI~dg~I~a~IDq~~giv~~~~~~~r~---~~y~~ale~ 375 (394)
T 3txn_A 301 TMLEQNLCRIIEPYSRVQVAHVAESIQLP-MPQVEKKLS-QMILDKKFSGILDQGEGVLIVFEETPVD---KTYERVLET 375 (394)
T ss_dssp HHHHHHHHHHHTTCSEEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSSCEEEETTTTEEEECCC----------------
T ss_pred HHHHHHHHHHhHhhceeeHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeeEEEcCCCCEEEECCCcchh---hHHHHHHHH
Confidence 88889999999999999999999999996 999999999 9999999999999999999998766665 445567789
Q ss_pred HHHHHHHHHHHHHH
Q 025901 174 LSNWLTTSDNLLIS 187 (246)
Q Consensus 174 L~~W~~~~~~vl~~ 187 (246)
+.+|...++.++..
T Consensus 376 l~~ls~vVd~L~~~ 389 (394)
T 3txn_A 376 IQSMGKVVDTLYQK 389 (394)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988877653
No 4
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.95 E-value=1.4e-09 Score=102.75 Aligned_cols=161 Identities=14% Similarity=0.152 Sum_probs=97.7
Q ss_pred HHHHHHHHHHhcCCCcccchhhhcCchhhhccCCCchHHHHHHHHHhcCChhhHhhh----hCCC---CCc-----c---
Q 025901 24 AALGSVIVEATSQPSLFAFSEILAVPNIAEFEGTENSKYLDMLRLFAHGTWSDYKNN----AGHL---PQL-----V--- 88 (246)
Q Consensus 24 ~aa~~li~~AL~~p~vf~F~eLL~~p~v~~L~~~~~~~~~~LL~iFa~Gt~~dy~~~----~~~l---~~L-----~--- 88 (246)
.+..-+|...+.+|..-.++.++.-+.... ...+...+..|+.+|..+.+..|... ...+ |.. .
T Consensus 259 ~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~-~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~~~~~~~~~~~~ 337 (445)
T 4b4t_P 259 PVLSHIVYFLVLSPYGNLQNDLIHKIQNDN-NLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDDLAFGGEANKHH 337 (445)
T ss_dssp HHHHHHHHHHHHSSCSSTTHHHHHSHHHHS-SCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCCSSCCCSCSSHH
T ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHhhcc-cccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccchhhhcchhhHH
Confidence 355667778888888888888886543221 11235678999999999998877642 2211 111 1
Q ss_pred -hHHHHHHHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEeecCCCCCCCcH
Q 025901 89 -PDQVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQL 167 (246)
Q Consensus 89 -~~~~~KLr~LtllsLa~~~k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkIDQ~~~~v~V~~~~~Rdl~~~q~ 167 (246)
....+.++...|..++..++.|+++.|++.|+++ ++++|.++. ++|..|.|.|+|||++|+|++....+
T Consensus 338 ~~~L~~~v~ehnl~~i~k~Ys~I~l~~la~lL~l~-~~evE~~ls-~mI~~g~i~akIDq~~giV~F~~~~~-------- 407 (445)
T 4b4t_P 338 WEDLQKRVIEHNLRVISEYYSRITLLRLNELLDLT-ESQTETYIS-DLVNQGIIYAKVNRPAKIVNFEKPKN-------- 407 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHTSC-HHHHHHHHH-HHHHHTSSCCEEETTTTEEEC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHhceeeHHHHHHHhCcC-HHHHHHHHH-HHHHCCCEEEEEcCCCCEEEECCCCC--------
Confidence 2234667778888999999999999999999997 999999999 99999999999999999887654322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025901 168 GSMIQTLSNWLTTSDNLLISIQEKIKWADS 197 (246)
Q Consensus 168 ~~l~~~L~~W~~~~~~vl~~Ie~~i~~~~~ 197 (246)
-.+.|..|.+++++++..|+.-.+-+++
T Consensus 408 --~~~~l~~W~~~i~~l~~~v~k~~~lI~k 435 (445)
T 4b4t_P 408 --SSQLLNEWSHNVDELLEHIETIGHLITK 435 (445)
T ss_dssp ------------------------------
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1357899999999999999765555555
No 5
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.71 E-value=6.8e-08 Score=90.55 Aligned_cols=134 Identities=14% Similarity=0.126 Sum_probs=96.0
Q ss_pred HHHHHHHHhcCCCcccc-hhhhcCchhhhc-cCCC-chHHHHHHHHHhcCChhhHhhh-----hCCC---CCcc---hHH
Q 025901 26 LGSVIVEATSQPSLFAF-SEILAVPNIAEF-EGTE-NSKYLDMLRLFAHGTWSDYKNN-----AGHL---PQLV---PDQ 91 (246)
Q Consensus 26 a~~li~~AL~~p~vf~F-~eLL~~p~v~~L-~~~~-~~~~~~LL~iFa~Gt~~dy~~~-----~~~l---~~L~---~~~ 91 (246)
+.-.+..++..++--.+ ..++.-|.+... ...| ..++.+++..|-.+.+..|... ...+ |-+. ..-
T Consensus 250 ~~y~~l~al~~~~r~~l~~~v~~~~~~~~~l~~~p~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~d~~l~~h~~~l 329 (429)
T 4b4t_R 250 ATYASVTGLFTLERTDLKSKVIDSPELLSLISTTAALQSISSLTISLYASDYASYFPYLLETYANVLIPCKYLNRHADFF 329 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHSSSSSHHHHHGGGSHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHSTTTTTCTTSTTTHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHhcCHHHHhhccCChhHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhccCHHHHHHHHHH
Confidence 44445555555444332 235666666544 3333 3567788888888888886431 1111 1122 345
Q ss_pred HHHHHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEeecCCC
Q 025901 92 VLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRD 161 (246)
Q Consensus 92 ~~KLr~LtllsLa~~~k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkIDQ~~~~v~V~~~~~Rd 161 (246)
.+.+|...++.++.++++|+++.+++.++++ +.++|.++. +.|..|-|.|||||++|+|++....+|.
T Consensus 330 ~~~ir~~~l~q~~~~Ys~I~l~~mA~~l~~s-~~~~E~~L~-~lI~~g~l~akID~~~giv~~~~~d~~~ 397 (429)
T 4b4t_R 330 VREMRRKVYAQLLESYKTLSLKSMASAFGVS-VAFLDNDLG-KFIPNKQLNCVIDRVNGIVETNRPDNKN 397 (429)
T ss_dssp HHHHHHHHHHHHHHTCSEEEHHHHHHHHTSC-HHHHHHHHH-HHHHHTSSCEEEETTTTEEEECC-----
T ss_pred HHHHHHHHHHHHhHHhceeeHHHHHHHhCcC-HHHHHHHHH-HHHHcCCeEEEEcCCCCEEEECCCCchh
Confidence 7899999999999999999999999999997 999999999 9999999999999999999988777664
No 6
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=98.55 E-value=3.5e-08 Score=84.35 Aligned_cols=97 Identities=18% Similarity=0.258 Sum_probs=76.1
Q ss_pred hHHHHHHHHHhcCChhhHhhhhCCCCC-cc----hHHHHHHHHHHhhhccc------CCcccChHHHHHHcCCC-----C
Q 025901 60 SKYLDMLRLFAHGTWSDYKNNAGHLPQ-LV----PDQVLKLKQLTVLTLAE------TNKVLPYDELMEELDVT-----N 123 (246)
Q Consensus 60 ~~~~~LL~iFa~Gt~~dy~~~~~~l~~-L~----~~~~~KLr~LtllsLa~------~~k~isy~~I~~~L~i~-----~ 123 (246)
..+.+|...+..||+..|.+.-..... +. --.+.|+|.+.+..|.. +...||++.|+.+|++. +
T Consensus 81 ~~y~~L~~Avr~Gdl~~f~~~l~~~~~~f~~~~~~lll~rlr~~v~r~l~rkv~~~~~~~rI~l~~i~~~l~~~~~~~~~ 160 (203)
T 3t5x_A 81 MQFAEVTRAVSEGNLLLLHEALAKHEAFFIRCGIFLILEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVALKFMQVEDVD 160 (203)
T ss_dssp GGGHHHHHHHHHTCHHHHHHHHHHTHHHHHHHTCHHHHHTHHHHHHHHHHHHHHHHHCCSEEEHHHHHHHHHHTTCTTCC
T ss_pred hHHHHHHHHHHhCCHHHHHHHHHHhHHHHHHCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCCC
Confidence 358899999999999999863211111 11 11357888887777754 67899999999999653 5
Q ss_pred hHHHHHHHHHHhHhcCccEEEecCCCCEEEEEee
Q 025901 124 VRELEDFLINECMYTGIVRGKLDQLRRCFEVQFA 157 (246)
Q Consensus 124 ~~evE~llI~~aI~~gLI~GkIDQ~~~~v~V~~~ 157 (246)
.+|||.++. ++|+.|.|+|+||+.++++.++..
T Consensus 161 ~~evE~ila-~lI~~G~Ikg~I~~~~~~lVlsk~ 193 (203)
T 3t5x_A 161 IDEVQCILA-NLIYMGHVKGYISHQHQKLVVSKQ 193 (203)
T ss_dssp HHHHHHHHH-HHHHHTSSCEEEETTTTEEEECSS
T ss_pred HHHHHHHHH-HHHHcCceEEEEcccccEEEECCC
Confidence 899999999 999999999999999999988754
No 7
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.43 E-value=2.2e-07 Score=83.19 Aligned_cols=123 Identities=12% Similarity=0.112 Sum_probs=78.6
Q ss_pred chHHHHHHHHHhcCChhhHhhhhCCC----CC---c---chHHHHHHHHHHhhhcccCCcccChHHHHHHcCCCChHHHH
Q 025901 59 NSKYLDMLRLFAHGTWSDYKNNAGHL----PQ---L---VPDQVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELE 128 (246)
Q Consensus 59 ~~~~~~LL~iFa~Gt~~dy~~~~~~l----~~---L---~~~~~~KLr~LtllsLa~~~k~isy~~I~~~L~i~~~~evE 128 (246)
..++..++..|..+++..|......+ .. + .......++...+..++...+.|+++.|++.|+++ ++++|
T Consensus 296 ~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~y~~i~l~~la~~l~~~-~~~~E 374 (434)
T 4b4t_Q 296 IDAMKAVAEAYNNRSLLDFNTALKQYEKELMGDELTRSHFNALYDTLLESNLCKIIEPFECVEISHISKIIGLD-TQQVE 374 (434)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTHHHHTCSHHHHHHHHHHHHHHHHHHHHHHHSSCSCEEHHHHHHHHTCC-HHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCcC-HHHHH
Confidence 56788999999999999987632211 11 1 12234677778888999999999999999999997 99999
Q ss_pred HHHHHHhHhcCccEEEecCCCCEEEEEeecCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025901 129 DFLINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQLGSMIQTLSNWLTTSDNLLISIQEKIK 193 (246)
Q Consensus 129 ~llI~~aI~~gLI~GkIDQ~~~~v~V~~~~~Rdl~~~q~~~l~~~L~~W~~~~~~vl~~Ie~~i~ 193 (246)
.++. ++|..|.|.|+|||.+++|.+.....++ .....|.+.++++...|+....
T Consensus 375 ~~l~-~lI~~~~i~a~id~~~g~v~~~~~~~~~----------~~~~~~l~~~~~l~~~vd~L~~ 428 (434)
T 4b4t_Q 375 GKLS-QMILDKIFYGVLDQGNGWLYVYETPNQD----------ATYDSALELVGQLNKVVDQLFE 428 (434)
T ss_dssp HHHH-HHHHHTSSCCEEETTTTEEECC--------------------------------------
T ss_pred HHHH-HHHhCCCcceecccccCeEeeCCCcchh----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 9999999999999999999986554443 2345566666666555554433
No 8
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=98.29 E-value=1.9e-06 Score=63.87 Aligned_cols=62 Identities=15% Similarity=0.261 Sum_probs=53.8
Q ss_pred HHHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEee
Q 025901 94 KLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFA 157 (246)
Q Consensus 94 KLr~LtllsLa~~~k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkIDQ~~~~v~V~~~ 157 (246)
++..-.|..++..+..|+++.|++.++++ .+++|.++. +.|..|-|.|+|||++++|.+...
T Consensus 15 ~v~E~nl~~is~~Y~~Isl~~La~ll~ls-~~~vE~~ls-~mI~~~~l~akIDq~~g~V~f~~~ 76 (84)
T 1ufm_A 15 AVIEHNLLSASKLYNNITFEELGALLEIP-AAKAEKIAS-QMITEGRMNGFIDQIDGIVHFETR 76 (84)
T ss_dssp HHHHHHHHHHHHSCSEEEHHHHHHHTTSC-HHHHHHHHH-HHHHTTSSCEEEETTTTEEEECCS
T ss_pred HHHHHHHHHHHHhcCeeeHHHHHHHHCcC-HHHHHHHHH-HHHhCCcEEEEEeCCCCEEEeCCc
Confidence 34444555677899999999999999998 999999999 999999999999999999986543
No 9
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.96 E-value=3.6e-06 Score=81.22 Aligned_cols=93 Identities=12% Similarity=0.241 Sum_probs=70.3
Q ss_pred hHHHHHHHHHhcCChhhHhhh----hCCC-CCcchHHHHHHHHH----HhhhcccCCcccChHHHHHHcCCCChHHHHHH
Q 025901 60 SKYLDMLRLFAHGTWSDYKNN----AGHL-PQLVPDQVLKLKQL----TVLTLAETNKVLPYDELMEELDVTNVRELEDF 130 (246)
Q Consensus 60 ~~~~~LL~iFa~Gt~~dy~~~----~~~l-~~L~~~~~~KLr~L----tllsLa~~~k~isy~~I~~~L~i~~~~evE~l 130 (246)
.+|+.|..+|..|++..|.+. ...+ ..=+-..+.++|+. -|..+......||+++|+..|++++.+++|.+
T Consensus 343 ~pY~~Lv~Avr~GdL~~F~~~L~~h~~~F~~Dgty~LI~rLr~~vir~~irkis~~YsrIsL~dIa~kL~L~s~eeaE~i 422 (523)
T 4b4t_S 343 LPYYHLTKAVKLGDLKKFTSTITKYKQLLLKDDTYQLCVRLRSNVIKTGIRIISLTYKKISLRDICLKLNLDSEQTVEYM 422 (523)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCTHHHHHHHHHHHHHHHHHSCCCSSEECHHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhcceeccCChhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCCHHHHHHH
Confidence 569999999999999999862 1111 11011123344442 34455567889999999999999878899999
Q ss_pred HHHHhHhcCccEEEecCCCCEEE
Q 025901 131 LINECMYTGIVRGKLDQLRRCFE 153 (246)
Q Consensus 131 lI~~aI~~gLI~GkIDQ~~~~v~ 153 (246)
|- ++|+.|.|+|+|||.++.|.
T Consensus 423 VA-kmI~dG~I~A~Idh~~g~v~ 444 (523)
T 4b4t_S 423 VS-RAIRDGVIEAKINHEDGFIE 444 (523)
T ss_dssp HH-HHHHHTSSCCEECTTTCCEE
T ss_pred HH-HHHHcCCceEEEecCCCEEE
Confidence 99 99999999999999999765
No 10
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=97.54 E-value=7e-05 Score=71.22 Aligned_cols=95 Identities=17% Similarity=0.176 Sum_probs=71.3
Q ss_pred HHHHHHHHhcCChhhHhhhh----CCC-CCcc-hHHHHHHHHHHhhhcc----------cCCcccChHHHHHHcCC----
Q 025901 62 YLDMLRLFAHGTWSDYKNNA----GHL-PQLV-PDQVLKLKQLTVLTLA----------ETNKVLPYDELMEELDV---- 121 (246)
Q Consensus 62 ~~~LL~iFa~Gt~~dy~~~~----~~l-~~L~-~~~~~KLr~LtllsLa----------~~~k~isy~~I~~~L~i---- 121 (246)
+..|...+..||+..|...- ..+ ..=. --.+.|+|++.+-.|. .+...||++.|+.+|++
T Consensus 299 y~~L~~AVr~Gdl~~F~~~L~~~~~~f~~~gily~LlerLr~~v~RnLirkv~~~~~~~~~~srI~l~~i~~aL~~~~~~ 378 (455)
T 3t5v_B 299 WSVLYKHVRYGNIQGVSLWLRQNERHLCARQLLIVLLEKLPMVTYRNLIKTVIKSWTTEWGQNKLPYSLIERVLQLSIGP 378 (455)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCEEEHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHhHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeHHHHHHHHhhccCc
Confidence 78899999999999998732 111 1111 2235667776443322 23479999999999984
Q ss_pred ----------------CChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEee
Q 025901 122 ----------------TNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFA 157 (246)
Q Consensus 122 ----------------~~~~evE~llI~~aI~~gLI~GkIDQ~~~~v~V~~~ 157 (246)
.+.+|||.++. .+|+.|+|+|+||+.++++.++..
T Consensus 379 ~~~~~~~~~~~~~~~~~~~devEcIlA-~LI~~G~IkGyIsh~~~~lVlSK~ 429 (455)
T 3t5v_B 379 TFEDPGAQEITIYNGIHSPKNVENVLV-TLINLGLLRANCFPQLQLCVVKKT 429 (455)
T ss_dssp CTTSTTCCCCCTTTSSCCSSCHHHHHH-HHHHHTSCCEEEETTTTEEEECCC
T ss_pred cccccccccccccccCCCHHHHHHHHH-HHHHcCCeEEEEecCCCEEEECCC
Confidence 24889999999 999999999999999999998765
No 11
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=93.34 E-value=0.13 Score=44.13 Aligned_cols=100 Identities=14% Similarity=0.138 Sum_probs=69.5
Q ss_pred hcCCCcccchhhhc-CchhhhccCCC-chHHHHHHHHHhcCChhhHhhhhCCCCCc-----chHHHHHHHHHHhhhcccC
Q 025901 34 TSQPSLFAFSEILA-VPNIAEFEGTE-NSKYLDMLRLFAHGTWSDYKNNAGHLPQL-----VPDQVLKLKQLTVLTLAET 106 (246)
Q Consensus 34 L~~p~vf~F~eLL~-~p~v~~L~~~~-~~~~~~LL~iFa~Gt~~dy~~~~~~l~~L-----~~~~~~KLr~LtllsLa~~ 106 (246)
|.-.++-.|.-.+. +|.-..+++++ -...+++-+.+..|+|..|-......|.. ..--+.++|.-.+-+++..
T Consensus 108 L~~~~~~ef~~~le~l~~~~~~~~~~~I~~al~l~~al~~GnY~kff~l~~~~p~~~~~~~~~~l~~~vR~~~l~~i~ka 187 (229)
T 4b0z_A 108 LSENRIAEFHTALESVPDKSLFERDPYVEWVISLEQNVMEGAFDKVASMIRSCNFPEFSYFMKIVMSMVRNEIATCAEKV 187 (229)
T ss_dssp HHTTCHHHHHHHHHHCSCTTHHHHCHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCchHHHHHHHhcChHHHhhcCHHHHHHHHHHHHHHcCCHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555543332 33222233333 24568899999999999987754444532 2334678888777788878
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHH
Q 025901 107 NKVLPYDELMEELDVTNVRELEDFLINE 134 (246)
Q Consensus 107 ~k~isy~~I~~~L~i~~~~evE~llI~~ 134 (246)
...||.+++++.|+++|.++++.++- +
T Consensus 188 Y~~i~l~~~~~~L~f~s~~e~~~f~~-~ 214 (229)
T 4b0z_A 188 YSEIPLSNATSLLYLENTKETEKLAE-E 214 (229)
T ss_dssp CSEEEHHHHHHHTTCSSHHHHHHHHH-H
T ss_pred cCCCCHHHHHHHhCCCCHHHHHHHHH-H
Confidence 89999999999999999999999987 6
No 12
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=92.71 E-value=0.15 Score=36.43 Aligned_cols=54 Identities=11% Similarity=0.280 Sum_probs=46.4
Q ss_pred hhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEE
Q 025901 100 VLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQ 155 (246)
Q Consensus 100 llsLa~~~k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkIDQ~~~~v~V~ 155 (246)
++.....+|+++.++||.++++. ..++-+-|- +....|.|.|-||...+-++|+
T Consensus 12 Fi~yIk~~Kvv~LedLA~~F~l~-t~~~i~RI~-~Le~~g~ltGViDDRGKfIyIs 65 (72)
T 1wi9_A 12 FINYIKKSKVVLLEDLAFQMGLR-TQDAINRIQ-DLLTEGTLTGVIDDRGKFIYIT 65 (72)
T ss_dssp HHHHHHHCSEECHHHHHHHHCSC-HHHHHHHHH-HHHHHSSSCEEECTTCCEEECC
T ss_pred HHHHHHHcCeeeHHHHHHHhCCC-hHHHHHHHH-HHHHCCCeEEEEeCCCCEEEec
Confidence 34555678999999999999998 777777776 8888999999999999999886
No 13
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=84.65 E-value=9.5 Score=27.84 Aligned_cols=69 Identities=14% Similarity=0.092 Sum_probs=48.9
Q ss_pred CcccChHHHHHHc-CCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEeecCCCCCCCcHHHHHHHHHHHHHH
Q 025901 107 NKVLPYDELMEEL-DVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQLGSMIQTLSNWLTT 180 (246)
Q Consensus 107 ~k~isy~~I~~~L-~i~~~~evE~llI~~aI~~gLI~GkIDQ~~~~v~V~~~~~Rdl~~~q~~~l~~~L~~W~~~ 180 (246)
....++.+|++.+ +++ ...+=..|= .....|+|..+-+..++....-+.++. + .++-.....+..|...
T Consensus 25 ~~~~~~~eLa~~l~~is-~~tls~~L~-~Le~~GlI~r~~~~~d~r~~~y~LT~~--G-~~l~~~~~~l~~w~~~ 94 (107)
T 2hzt_A 25 HGKKRTSELKRLMPNIT-QKMLTQQLR-ELEADGVINRIVYNQVPPKVEYELSEY--G-RSLEGILDMLXAWGAN 94 (107)
T ss_dssp TCCBCHHHHHHHCTTSC-HHHHHHHHH-HHHHTTSEEEEEECSSSCEEEEEECTT--G-GGGHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHhcCCC-HHHHHHHHH-HHHHCCCEEEeecCCCCCeEEEEECcc--H-HHHHHHHHHHHHHHHH
Confidence 3568999999999 997 777777665 788899999998876655443333332 1 2344556777888754
No 14
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=84.36 E-value=6 Score=29.36 Aligned_cols=80 Identities=11% Similarity=0.211 Sum_probs=51.7
Q ss_pred HHHHHHhhhcccCCcccChHHHHHHc-CCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEeecCCCCCCCcHHHHHH
Q 025901 94 KLKQLTVLTLAETNKVLPYDELMEEL-DVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQLGSMIQ 172 (246)
Q Consensus 94 KLr~LtllsLa~~~k~isy~~I~~~L-~i~~~~evE~llI~~aI~~gLI~GkIDQ~~~~v~V~~~~~Rdl~~~q~~~l~~ 172 (246)
|-|.+-|..|......++|.+|++.+ +|+ ...+=.-+= ..-..|+|.-+-+ .++.+--.-.|| ++.....
T Consensus 27 ~wrl~IL~~L~~g~~~~~~~eL~~~l~gis-~~~ls~~L~-~Le~~GlV~r~~~--r~~~y~LT~~G~-----~l~~~l~ 97 (111)
T 3df8_A 27 KYTMLIISVLGNGSTRQNFNDIRSSIPGIS-STILSRRIK-DLIDSGLVERRSG--QITTYALTEKGM-----NVRNSLM 97 (111)
T ss_dssp TTHHHHHHHHTSSSSCBCHHHHHHTSTTCC-HHHHHHHHH-HHHHTTSEEEEES--SSEEEEECHHHH-----HHHHHHH
T ss_pred ccHHHHHHHHhcCCCCCCHHHHHHHccCCC-HHHHHHHHH-HHHHCCCEEEeec--CcEEEEECccHH-----HHHHHHH
Confidence 34444444555444456799999999 997 777776665 7788999999888 222221122333 2455677
Q ss_pred HHHHHHHHHH
Q 025901 173 TLSNWLTTSD 182 (246)
Q Consensus 173 ~L~~W~~~~~ 182 (246)
.+..|....+
T Consensus 98 ~l~~w~~~~~ 107 (111)
T 3df8_A 98 PLLQYISVLD 107 (111)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 8888887543
No 15
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=83.10 E-value=1 Score=34.48 Aligned_cols=71 Identities=15% Similarity=0.320 Sum_probs=44.0
Q ss_pred CCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE---ecCCCCEEEEEeecCCCCCCCcHHHHHHHHHHHH
Q 025901 106 TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK---LDQLRRCFEVQFAAGRDLRPGQLGSMIQTLSNWL 178 (246)
Q Consensus 106 ~~k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~Gk---IDQ~~~~v~V~~~~~Rdl~~~q~~~l~~~L~~W~ 178 (246)
.+..+|+.+|++.++++ ...+=..+= .....|+|.+. +|...--..++....=.+.+.....+.+.|..|-
T Consensus 15 ~~~~~~~~ela~~lg~s-~~tv~~~l~-~L~~~G~i~~~~~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~l~~~~ 88 (141)
T 1i1g_A 15 KDARTPFTEIAKKLGIS-ETAVRKRVK-ALEEKGIIEGYTIKINPKKLGYSLVTITGVDTKPEKLFEVAEKLKEYD 88 (141)
T ss_dssp HCTTCCHHHHHHHHTSC-HHHHHHHHH-HHHHHTSSCCCCCCCCSGGGTCCEEEEEEEEECGGGHHHHHHHHHHST
T ss_pred HcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEeccccccChHHhCccEEEEEEEEECchhHHHHHHHHhcCC
Confidence 34568999999999997 777776665 77788999764 3332211111110000123456777778877774
No 16
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=83.00 E-value=3.4 Score=29.57 Aligned_cols=58 Identities=14% Similarity=0.175 Sum_probs=41.3
Q ss_pred HHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEE
Q 025901 95 LKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQ 155 (246)
Q Consensus 95 Lr~LtllsLa~~~k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkIDQ~~~~v~V~ 155 (246)
.+.|.++.-..+++.+++.+|++.|+++ ...|...|- +....|+|.-. +...+.-.|.
T Consensus 13 ~~IL~~L~~~~pg~~~t~~eLA~~Lgvs-r~tV~~~L~-~Le~~G~I~~~-g~~~~~W~i~ 70 (81)
T 1qbj_A 13 QRILKFLEELGEGKATTAHDLSGKLGTP-KKEINRVLY-SLAKKGKLQKE-AGTPPLWKIA 70 (81)
T ss_dssp HHHHHHHHHHCTTCCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEE-SSSSCEEEEC
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEec-CCCCCeeEEe
Confidence 3345555533356799999999999997 899999987 88889998643 3444444443
No 17
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=80.66 E-value=3.2 Score=31.46 Aligned_cols=81 Identities=11% Similarity=0.114 Sum_probs=55.9
Q ss_pred hcccCCcc-cChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCC--CCEEEEEeecCCCCCCCc-HHHHHHHHHHH
Q 025901 102 TLAETNKV-LPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQL--RRCFEVQFAAGRDLRPGQ-LGSMIQTLSNW 177 (246)
Q Consensus 102 sLa~~~k~-isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkIDQ~--~~~v~V~~~~~Rdl~~~q-~~~l~~~L~~W 177 (246)
.|...... ++-.+|++.++++ ...|-..|= .....|+|...-+.. .+..++..+.+ +.+ .+.+...+..|
T Consensus 34 ~L~~~~~~~~t~~eLa~~l~~s-~sTV~r~L~-~L~~~GlV~r~~~~~d~~~~~~~y~~~~----~~~~~~~i~~~~~~~ 107 (123)
T 3r0a_A 34 SFLNEPDRWIDTDALSKSLKLD-VSTVQRSVK-KLHEKEILQRSQQNLDGGGYVYIYKIYS----KNQIRNIIQKIVQSW 107 (123)
T ss_dssp HHHHSTTCCEEHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEEEEECTTSCEEEEEEECC----HHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEeeCCccCCCcceEEEecCC----HHHHHHHHHHHHHHH
Confidence 34444555 9999999999997 888887776 788899998765443 23334333332 233 45678889999
Q ss_pred HHHHHHHHHHH
Q 025901 178 LTTSDNLLISI 188 (246)
Q Consensus 178 ~~~~~~vl~~I 188 (246)
.+.+...++.+
T Consensus 108 ~~~~~~~l~~~ 118 (123)
T 3r0a_A 108 ADRLGQELKEW 118 (123)
T ss_dssp HHHHHHTTTTT
T ss_pred HHHHHHHHHHH
Confidence 99887766544
No 18
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=79.78 E-value=4.4 Score=28.49 Aligned_cols=47 Identities=17% Similarity=0.186 Sum_probs=37.4
Q ss_pred HHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEe
Q 025901 97 QLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKL 145 (246)
Q Consensus 97 ~LtllsLa~~~k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkI 145 (246)
.|.++.-...+..+++.+||+.|+++ ...|...|= +....|+|.+.-
T Consensus 19 IL~~L~~~~~~~~~t~~eLA~~Lgvs-~~tV~~~L~-~L~~~G~I~~~g 65 (77)
T 1qgp_A 19 ILKFLEELGEGKATTAHDLSGKLGTP-KKEINRVLY-SLAKKGKLQKEA 65 (77)
T ss_dssp HHHHHHHHCSSSCEEHHHHHHHHCCC-HHHHHHHHH-HHHHHTSEEEEC
T ss_pred HHHHHHHcCCCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEecC
Confidence 34445444446689999999999998 899999877 888999998864
No 19
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=76.65 E-value=23 Score=27.38 Aligned_cols=76 Identities=20% Similarity=0.253 Sum_probs=52.4
Q ss_pred HHHHhhhcccCCcccChHHHHHHc-CCCChHHHHHHHHHHhHhcCccEEEecCCCCE-EEEEe-ecCCCCCCCcHHHHHH
Q 025901 96 KQLTVLTLAETNKVLPYDELMEEL-DVTNVRELEDFLINECMYTGIVRGKLDQLRRC-FEVQF-AAGRDLRPGQLGSMIQ 172 (246)
Q Consensus 96 r~LtllsLa~~~k~isy~~I~~~L-~i~~~~evE~llI~~aI~~gLI~GkIDQ~~~~-v~V~~-~~~Rdl~~~q~~~l~~ 172 (246)
+.+-|..|. .+..+|.+|++.+ +|+ ...|=..+= +.-..|||.=+.+..... +.+.- -.||. +.....
T Consensus 28 ~l~IL~~L~--~g~~rf~eL~~~l~gIs-~~~Ls~~L~-~Le~~GLV~R~~~~~d~r~v~y~LT~~G~~-----l~~~l~ 98 (131)
T 4a5n_A 28 KGILFYHMI--DGKKRFNEFRRICPSIT-QRMLTLQLR-ELEADGIVHREVYHQVPPKVEYSLTEFGRT-----LEPIVL 98 (131)
T ss_dssp HHHHHHHHT--TSCBCHHHHHHHCTTSC-HHHHHHHHH-HHHHTTSEEEEEECSSSCEEEEEECTTGGG-----GHHHHH
T ss_pred HHHHHHHHh--cCCcCHHHHHHHhcccC-HHHHHHHHH-HHHHCCCEEEEecCCCCCeEEEEECHhHHH-----HHHHHH
Confidence 334444554 4679999999999 997 777777776 788899999887765443 33322 23444 456678
Q ss_pred HHHHHHHH
Q 025901 173 TLSNWLTT 180 (246)
Q Consensus 173 ~L~~W~~~ 180 (246)
.|..|...
T Consensus 99 ~l~~W~~~ 106 (131)
T 4a5n_A 99 QMKEWGES 106 (131)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88899764
No 20
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=75.37 E-value=14 Score=25.79 Aligned_cols=39 Identities=18% Similarity=0.287 Sum_probs=31.6
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecC
Q 025901 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQ 147 (246)
Q Consensus 107 ~k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkIDQ 147 (246)
+..+++.+|++.++++ ...|=..+= .....|+|...-+.
T Consensus 28 ~~~~~~~ela~~l~is-~~tvs~~l~-~L~~~gli~~~~~~ 66 (100)
T 1ub9_A 28 RRKAPFSQIQKVLDLT-PGNLDSHIR-VLERNGLVKTYKVI 66 (100)
T ss_dssp HSEEEHHHHHHHTTCC-HHHHHHHHH-HHHHTTSEEEEEEC
T ss_pred cCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEEecC
Confidence 3579999999999997 778887765 77889999976643
No 21
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=75.18 E-value=4.2 Score=31.55 Aligned_cols=47 Identities=19% Similarity=0.280 Sum_probs=36.4
Q ss_pred hhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEE---EecCC
Q 025901 100 VLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG---KLDQL 148 (246)
Q Consensus 100 llsLa~~~k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~G---kIDQ~ 148 (246)
|+.+...+..+|+.+|++.++++ ...+-..+= .....|+|.+ .+|..
T Consensus 13 il~~L~~~~~~s~~ela~~lg~s-~~tv~~~l~-~L~~~G~i~~~~~~~~~~ 62 (152)
T 2cg4_A 13 ILEALMGNARTAYAELAKQFGVS-PETIHVRVE-KMKQAGIITGARIDVSPK 62 (152)
T ss_dssp HHHHHHHCTTSCHHHHHHHHTSC-HHHHHHHHH-HHHHHTSEEEEEEEECTT
T ss_pred HHHHHHHcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHcCCcceEEEecCHH
Confidence 33333445679999999999997 888887776 8888999986 56764
No 22
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=74.95 E-value=18 Score=25.38 Aligned_cols=72 Identities=15% Similarity=0.177 Sum_probs=46.1
Q ss_pred ccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCC---EEEEEeecCCCCCCCcHHHHHHHHHHHHHH
Q 025901 104 AETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRR---CFEVQFAAGRDLRPGQLGSMIQTLSNWLTT 180 (246)
Q Consensus 104 a~~~k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkIDQ~~~---~v~V~~~~~Rdl~~~q~~~l~~~L~~W~~~ 180 (246)
...+..++..+|++.++++ ...|-..+= .....|+|...-+...+ .... +.. .++-+..+...+..|.+.
T Consensus 31 ~~~~~~~t~~ela~~l~is-~~tv~~~l~-~L~~~g~v~~~~~~~~~~gr~~~~-~~l----~~~~~~~~~~~~~~~~~~ 103 (109)
T 2d1h_A 31 VEIEKPITSEELADIFKLS-KTTVENSLK-KLIELGLVVRTKTEGKKIGRPKYY-YSI----SSNILEKIRNDLLNCAKR 103 (109)
T ss_dssp HHHCSCEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEEC-------CCEE-EEE----CTTHHHHHHHHHHHHHHH
T ss_pred HHcCCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEeeccccCCCCCCCee-eec----CHHHHHHHHHHHHHHHHH
Confidence 3335679999999999997 888887776 78889999876654332 1211 211 124456666777777665
Q ss_pred HH
Q 025901 181 SD 182 (246)
Q Consensus 181 ~~ 182 (246)
+.
T Consensus 104 ~~ 105 (109)
T 2d1h_A 104 ME 105 (109)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 23
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.08 E-value=7.3 Score=34.05 Aligned_cols=95 Identities=15% Similarity=0.160 Sum_probs=68.2
Q ss_pred Ccccch-hhhcCchh-hhccCCCc-hHHHHHHHHHhcCChhhHhhh--hCCCCC-----cchHHHHHHHHHHhhhcccCC
Q 025901 38 SLFAFS-EILAVPNI-AEFEGTEN-SKYLDMLRLFAHGTWSDYKNN--AGHLPQ-----LVPDQVLKLKQLTVLTLAETN 107 (246)
Q Consensus 38 ~vf~F~-eLL~~p~v-~~L~~~~~-~~~~~LL~iFa~Gt~~dy~~~--~~~l~~-----L~~~~~~KLr~LtllsLa~~~ 107 (246)
++-.|. +|-.+|.. .+++++++ ...+++-+.+..|+|..|-.. .+..|. +.+--..++|.-.+-+++...
T Consensus 118 ~~~efh~~Le~L~~~~~~~~~d~~Ik~al~le~al~eGnY~kff~l~~~~~~p~~~~~~f~d~l~~~iR~~a~~~i~kaY 197 (274)
T 4b4t_T 118 NTTKFHSELQYLDKHIKNLEDDSLLSYPIKLDRWLMEGSYQKAWDLLQSGSQNISEFDSFTDILKSAIRDEIAKNTELSY 197 (274)
T ss_dssp CSTHHHHHHHSSSCSSSTTTCCHHHHHHHHHHHHHHHTCSHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHhcchhhHhHhcChHHHHHHHHHHHHHcCCHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 34445543 34555542 446788899999999998652 233343 223446889988888888888
Q ss_pred cccChHHHHHHcCCCChHHHHHHHH
Q 025901 108 KVLPYDELMEELDVTNVRELEDFLI 132 (246)
Q Consensus 108 k~isy~~I~~~L~i~~~~evE~llI 132 (246)
+.||.+.+++.|+.+|.+++.+|+-
T Consensus 198 ~~i~l~~~~~~L~F~s~~e~~~F~~ 222 (274)
T 4b4t_T 198 DFLPLSNIKALLFFNNEKETEKFAL 222 (274)
T ss_dssp SSCCHHHHHHHHTCCSHHHHHHHHH
T ss_pred hhcCHHHHHHHhCCCCHHHHHHHHH
Confidence 9999999999999999999999987
No 24
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=73.65 E-value=3.6 Score=31.72 Aligned_cols=47 Identities=15% Similarity=0.230 Sum_probs=35.9
Q ss_pred hhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE---ecCC
Q 025901 100 VLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK---LDQL 148 (246)
Q Consensus 100 llsLa~~~k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~Gk---IDQ~ 148 (246)
|+.+...+..+|+.+|++.++++ ...+-..+= .....|+|++. +|..
T Consensus 10 il~~L~~~~~~s~~ela~~lg~s-~~tv~~~l~-~L~~~G~i~~~~~~~d~~ 59 (144)
T 2cfx_A 10 IIEELKKDSRLSMRELGRKIKLS-PPSVTERVR-QLESFGIIKQYTLEVDQK 59 (144)
T ss_dssp HHHHHHHCSCCCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEEEEECTG
T ss_pred HHHHHHHcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEEEecccChh
Confidence 33333445679999999999997 888888776 88889999864 6654
No 25
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=73.55 E-value=3.7 Score=32.28 Aligned_cols=42 Identities=26% Similarity=0.175 Sum_probs=33.7
Q ss_pred cCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEE---EecCC
Q 025901 105 ETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG---KLDQL 148 (246)
Q Consensus 105 ~~~k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~G---kIDQ~ 148 (246)
..+..+|+.+|++.++++ ...+-..+- .....|+|.+ .+|..
T Consensus 20 ~~~~~~s~~ela~~lg~s-~~tv~~~l~-~L~~~G~i~~~~~~~d~~ 64 (162)
T 2p5v_A 20 QENGRLTNVELSERVALS-PSPCLRRLK-QLEDAGIVRQYAALLSPE 64 (162)
T ss_dssp HHCTTCCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEEEEEECTG
T ss_pred HHcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEeeecccCChH
Confidence 445569999999999997 888888777 8889999985 45544
No 26
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=73.23 E-value=3.9 Score=31.61 Aligned_cols=47 Identities=23% Similarity=0.272 Sum_probs=35.7
Q ss_pred hhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE---ecCC
Q 025901 100 VLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK---LDQL 148 (246)
Q Consensus 100 llsLa~~~k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~Gk---IDQ~ 148 (246)
|+.+...+..+|+.+|++.++++ ...+-..+= .....|+|.+. +|..
T Consensus 14 il~~L~~~~~~s~~ela~~lg~s-~~tv~~~l~-~L~~~G~i~~~~~~~~~~ 63 (151)
T 2dbb_A 14 LVKILSENSRLTYRELADILNTT-RQRIARRID-KLKKLGIIRKFTIIPDID 63 (151)
T ss_dssp HHHHHHHCTTCCHHHHHHHTTSC-HHHHHHHHH-HHHHHTSEEEEEEEECTG
T ss_pred HHHHHHHcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEEEecCChH
Confidence 33333455779999999999997 888887776 88889999753 5654
No 27
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=73.08 E-value=8.4 Score=29.58 Aligned_cols=48 Identities=17% Similarity=0.323 Sum_probs=36.8
Q ss_pred HhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEE---EecCC
Q 025901 99 TVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG---KLDQL 148 (246)
Q Consensus 99 tllsLa~~~k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~G---kIDQ~ 148 (246)
.|+.+...+..+|+.+|++.++++ ...+=..+= .....|+|.+ .+|..
T Consensus 7 ~il~~L~~~~~~~~~ela~~lg~s-~~tv~~~l~-~L~~~G~i~~~~~~~d~~ 57 (150)
T 2pn6_A 7 RILKILQYNAKYSLDEIAREIRIP-KATLSYRIK-KLEKDGVIKGYYAYINPA 57 (150)
T ss_dssp HHHHHHTTCTTSCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSSCCCCCCCCGG
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCcEEEEEeecCHH
Confidence 344444556679999999999997 888877776 8888999987 56653
No 28
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=72.98 E-value=16 Score=26.66 Aligned_cols=63 Identities=5% Similarity=0.032 Sum_probs=45.8
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEeecCCCCCCCcHHHHHHHHHHHHHH
Q 025901 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQLGSMIQTLSNWLTT 180 (246)
Q Consensus 108 k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkIDQ~~~~v~V~~~~~Rdl~~~q~~~l~~~L~~W~~~ 180 (246)
+.++..+|++.++++ ...|-..+= .....|+|..+-+.. .+. |. +.++.+..+.+.|..|...
T Consensus 37 ~~~s~~eLa~~lgis-~stvs~~L~-~L~~~GlV~~~~~gr--~~~--y~----l~~~~~~~l~~~l~~~~~~ 99 (108)
T 2kko_A 37 GERAVEAIATATGMN-LTTASANLQ-ALKSGGLVEARREGT--RQY--YR----IAGEDVARLFALVQVVADE 99 (108)
T ss_dssp CCEEHHHHHHHHTCC-HHHHHHHHH-HHHHHTSEEEEEETT--EEE--EE----ESCHHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEEEEeCC--EEE--EE----EChHHHHHHHHHHHHHhhH
Confidence 568999999999997 888887765 778899998775432 222 21 2335677888888888743
No 29
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=72.80 E-value=5.6 Score=31.08 Aligned_cols=57 Identities=16% Similarity=0.240 Sum_probs=40.8
Q ss_pred HHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEE
Q 025901 95 LKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEV 154 (246)
Q Consensus 95 Lr~LtllsLa~~~k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkIDQ~~~~v~V 154 (246)
+|.|..+.....++.+|-.+|++.+++| ..-|+.++- ..-.+|+|... -..++-+..
T Consensus 14 l~~L~~La~~~~~~~~s~~~IA~~~~i~-~~~l~kil~-~L~~aGlv~s~-rG~~GGy~L 70 (143)
T 3t8r_A 14 LTLMISLAKKEGQGCISLKSIAEENNLS-DLYLEQLVG-PLRNAGLIRSV-RGAKGGYQL 70 (143)
T ss_dssp HHHHHHHHTTTTSCCEEHHHHHHHTTCC-HHHHHHHHH-HHHHTTSEEEC-SSSSSEEEE
T ss_pred HHHHHHHHhCCCCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCEEEec-CCCCCCeee
Confidence 3444444433345679999999999998 999999988 88899999864 333444443
No 30
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=72.75 E-value=3.4 Score=33.23 Aligned_cols=42 Identities=17% Similarity=0.188 Sum_probs=33.6
Q ss_pred cCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEE---EecCC
Q 025901 105 ETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG---KLDQL 148 (246)
Q Consensus 105 ~~~k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~G---kIDQ~ 148 (246)
..+..+|+.+|++.++++ ...|-..+- .....|+|.+ .+|..
T Consensus 27 ~~~~~~s~~eLA~~lglS-~~tv~~~l~-~L~~~G~I~~~~~~~d~~ 71 (171)
T 2ia0_A 27 KKDARLTISELSEQLKKP-ESTIHFRIK-KLQERGVIERYTIILGEQ 71 (171)
T ss_dssp HHCTTCCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEEEEEECTT
T ss_pred HHcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEeecccCCHH
Confidence 344579999999999997 888887776 8888999975 45554
No 31
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=72.48 E-value=18 Score=26.84 Aligned_cols=43 Identities=16% Similarity=0.017 Sum_probs=35.3
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE
Q 025901 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (246)
Q Consensus 107 ~k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkIDQ~~~~ 151 (246)
+..++..+|++.++++ ...|=..|= .....|+|.-.-|..++.
T Consensus 48 ~~~~~~~ela~~l~~s-~~tvs~~l~-~Le~~glv~r~~~~~d~r 90 (146)
T 2gxg_A 48 DGPKTMAYLANRYFVT-QSAITASVD-KLEEMGLVVRVRDREDRR 90 (146)
T ss_dssp TSCBCHHHHHHHTTCC-HHHHHHHHH-HHHHTTSEEEEECSSCTT
T ss_pred cCCcCHHHHHHHhCCC-chhHHHHHH-HHHHCCCEEeecCCCCCc
Confidence 5679999999999997 878877765 888899999887765443
No 32
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=72.19 E-value=2.8 Score=33.79 Aligned_cols=67 Identities=9% Similarity=0.196 Sum_probs=43.6
Q ss_pred cCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEE---EecCCC--CE--EEEEeecCCCCCCCcHHHHHHHHHHH
Q 025901 105 ETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG---KLDQLR--RC--FEVQFAAGRDLRPGQLGSMIQTLSNW 177 (246)
Q Consensus 105 ~~~k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~G---kIDQ~~--~~--v~V~~~~~Rdl~~~q~~~l~~~L~~W 177 (246)
..+..+||.+|++.++++ ...+-..+- .....|+|++ .+|... .. ..|.+..+ ++..+.+.+.|..|
T Consensus 37 ~~~~~~s~~eLA~~lglS-~~tv~~rl~-~L~~~G~I~~~~a~vd~~~~G~~~~a~v~v~~~----~~~~~~v~~~l~~~ 110 (171)
T 2e1c_A 37 QNDGKAPLREISKITGLA-ESTIHERIR-KLRESGVIKKFTAIIDPEALGYSMLAFILVKVK----AGKYSEVASNLAKY 110 (171)
T ss_dssp HHCTTCCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSSCCCCCCCCGGGGTCCEEEEEEEEEC----TTCHHHHHHHHHTS
T ss_pred HHcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEeeeEEECHHHcCCCEEEEEEEEEC----cchHHHHHHHHhcC
Confidence 445679999999999997 888877776 7888999976 355532 21 22322222 45555555555543
No 33
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=72.14 E-value=13 Score=27.38 Aligned_cols=46 Identities=17% Similarity=0.126 Sum_probs=37.4
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEE
Q 025901 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEV 154 (246)
Q Consensus 107 ~k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkIDQ~~~~v~V 154 (246)
+..++..+|++.++++ ...|=..|= .....|+|.-.-|..++....
T Consensus 41 ~~~~~~~ela~~l~~s-~~tvs~~l~-~L~~~glv~~~~~~~d~R~~~ 86 (138)
T 3bpv_A 41 EPGIKQDELATFFHVD-KGTIARTLR-RLEESGFIEREQDPENRRRYI 86 (138)
T ss_dssp STTCBHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEEETTEEEEEE
T ss_pred cCCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEeecCCCCceeEE
Confidence 4678999999999997 888887765 888999999888876555443
No 34
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=71.97 E-value=7.3 Score=31.23 Aligned_cols=64 Identities=11% Similarity=0.102 Sum_probs=45.5
Q ss_pred cchHHHHHHHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEE
Q 025901 87 LVPDQVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFE 153 (246)
Q Consensus 87 L~~~~~~KLr~LtllsLa~~~k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkIDQ~~~~v~ 153 (246)
++...--=+|.|..++...+++.+|-.+|++.+++| ..-|+.++- ..-.+|+|..+= ..++-+.
T Consensus 22 lS~~~~yAlr~L~~LA~~~~~~~~s~~eIA~~~~i~-~~~l~kil~-~L~~aGlv~s~r-G~~GGy~ 85 (159)
T 3lwf_A 22 ITTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLS-EHYLEQLIG-PLRNAGIVKSIR-GAHGGYV 85 (159)
T ss_dssp CCHHHHHHHHHHHHHHHTTTSCCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEC-STTCEEE
T ss_pred CchHHHHHHHHHHHHHhcCCCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCeEEEec-CCCCceE
Confidence 444433445555555544456689999999999998 999999987 889999998763 3344333
No 35
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=71.44 E-value=14 Score=27.50 Aligned_cols=42 Identities=10% Similarity=0.051 Sum_probs=34.8
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE
Q 025901 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (246)
Q Consensus 108 k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkIDQ~~~~ 151 (246)
..++..+|++.++++ ...|=..|= .....|+|.-.-|..++.
T Consensus 42 ~~~t~~~la~~l~~s-~~~vs~~l~-~Le~~gli~r~~~~~d~R 83 (144)
T 1lj9_A 42 PGIIQEKIAELIKVD-RTTAARAIK-RLEEQGFIYRQEDASNKK 83 (144)
T ss_dssp TTEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEECSSCTT
T ss_pred cCcCHHHHHHHHCCC-HhHHHHHHH-HHHHCCCEEeecCCCCCc
Confidence 478999999999997 888887765 888899999888775444
No 36
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=70.63 E-value=20 Score=27.40 Aligned_cols=80 Identities=13% Similarity=0.150 Sum_probs=50.9
Q ss_pred HHHHHHhhhcccCCcccChHHHHHHc-CCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEeecCCCCCCCcHHHHHH
Q 025901 94 KLKQLTVLTLAETNKVLPYDELMEEL-DVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQLGSMIQ 172 (246)
Q Consensus 94 KLr~LtllsLa~~~k~isy~~I~~~L-~i~~~~evE~llI~~aI~~gLI~GkIDQ~~~~v~V~~~~~Rdl~~~q~~~l~~ 172 (246)
+.+.+.|..|. ....+|.+|++.+ +|+ ...|=..|= .....|+|.-+-+...+....-+..+. + .++-....
T Consensus 35 ~w~l~IL~~L~--~g~~~~~eLa~~l~gis-~~tls~~L~-~Le~~GlV~r~~~~~d~r~~~y~LT~~--G-~~l~~~l~ 107 (131)
T 1yyv_A 35 RWGVLILVALR--DGTHRFSDLRRXMGGVS-EXMLAQSLQ-ALEQDGFLNRVSYPVVPPHVEYSLTPL--G-EQVSDXVA 107 (131)
T ss_dssp HHHHHHHHHGG--GCCEEHHHHHHHSTTCC-HHHHHHHHH-HHHHHTCEEEEEECSSSCEEEEEECHH--H-HHHHHHHH
T ss_pred CcHHHHHHHHH--cCCCCHHHHHHHhccCC-HHHHHHHHH-HHHHCCcEEEEecCCCCCeEEEEECcc--H-HHHHHHHH
Confidence 34433444454 3578999999999 697 777777766 788899999988876554333333221 1 12334456
Q ss_pred HHHHHHHH
Q 025901 173 TLSNWLTT 180 (246)
Q Consensus 173 ~L~~W~~~ 180 (246)
.+..|...
T Consensus 108 ~l~~w~~~ 115 (131)
T 1yyv_A 108 ALADWIEL 115 (131)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66677653
No 37
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=70.38 E-value=18 Score=26.23 Aligned_cols=66 Identities=15% Similarity=0.142 Sum_probs=46.2
Q ss_pred CcccChHHHHHHcC-CCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEee--cCCCCCCCcHHHHHHHHHHHHH
Q 025901 107 NKVLPYDELMEELD-VTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFA--AGRDLRPGQLGSMIQTLSNWLT 179 (246)
Q Consensus 107 ~k~isy~~I~~~L~-i~~~~evE~llI~~aI~~gLI~GkIDQ~~~~v~V~~~--~~Rdl~~~q~~~l~~~L~~W~~ 179 (246)
...++|.+|++.++ ++ ...|=..+= .....|+|..+-+..++....-+. .||. +......+.+|..
T Consensus 36 ~~~~~~~eL~~~l~gis-~~~ls~~L~-~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~-----l~~~l~~l~~w~~ 104 (107)
T 2fsw_A 36 RRIIRYGELKRAIPGIS-EKMLIDELK-FLCGKGLIKKKQYPEVPPRVEYSLTPLGEK-----VLPIIDEIAKFGM 104 (107)
T ss_dssp TSCEEHHHHHHHSTTCC-HHHHHHHHH-HHHHTTSEEEEEECSSSCEEEEEECHHHHT-----THHHHHHHHHHHH
T ss_pred hCCcCHHHHHHHcccCC-HHHHHHHHH-HHHHCCCEEEeecCCCCCeeEEEECccHHH-----HHHHHHHHHHHHH
Confidence 45789999999995 97 777877765 788899999988876544333332 2333 3344567777864
No 38
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=69.72 E-value=3.3 Score=32.20 Aligned_cols=42 Identities=7% Similarity=0.256 Sum_probs=32.6
Q ss_pred hhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEE
Q 025901 100 VLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG 143 (246)
Q Consensus 100 llsLa~~~k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~G 143 (246)
|+.+...+..+|+.+|++.++++ ...+-..+= .....|+|.+
T Consensus 12 il~~L~~~~~~s~~ela~~lg~s-~~tv~~~l~-~L~~~G~i~~ 53 (151)
T 2cyy_A 12 IIKILQNDGKAPLREISKITGLA-ESTIHERIR-KLRESGVIKK 53 (151)
T ss_dssp HHHHHHHCTTCCHHHHHHHHCSC-HHHHHHHHH-HHHHHTSSCC
T ss_pred HHHHHHHcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEE
Confidence 33333445679999999999997 888877776 7888999975
No 39
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=68.23 E-value=14 Score=27.68 Aligned_cols=49 Identities=12% Similarity=0.156 Sum_probs=37.3
Q ss_pred HHHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE
Q 025901 94 KLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (246)
Q Consensus 94 KLr~LtllsLa~~~k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~Gk 144 (246)
-++.|..+....+++.++-.+|++.++++ ..-|...+- ..-..|+|...
T Consensus 11 al~iL~~la~~~~~~~~s~~ela~~~~i~-~~~v~~il~-~L~~~Glv~~~ 59 (129)
T 2y75_A 11 GLTIMIELAKKHGEGPTSLKSIAQTNNLS-EHYLEQLVS-PLRNAGLVKSI 59 (129)
T ss_dssp HHHHHHHHHHTTTSCCBCHHHHHHHTTSC-HHHHHHHHH-HHHHTTSEEEC
T ss_pred HHHHHHHHHhCCCCCcCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCceEec
Confidence 34444444433346789999999999998 999999887 88889998753
No 40
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=68.15 E-value=32 Score=25.06 Aligned_cols=68 Identities=24% Similarity=0.130 Sum_probs=46.0
Q ss_pred cccChHHHHHHc-CCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEeecCCCCCCCcHHHHHHHHHHHHHH
Q 025901 108 KVLPYDELMEEL-DVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQLGSMIQTLSNWLTT 180 (246)
Q Consensus 108 k~isy~~I~~~L-~i~~~~evE~llI~~aI~~gLI~GkIDQ~~~~v~V~~~~~Rdl~~~q~~~l~~~L~~W~~~ 180 (246)
..+++.+|++.+ +++ ...|=..|= .....|+|...-+..++....-+..+. + .++-.....+..|...
T Consensus 34 ~~~~~~eLa~~l~~is-~~tvs~~L~-~Le~~GlI~r~~~~~d~r~~~~~LT~~--G-~~~~~~~~~l~~w~~~ 102 (112)
T 1z7u_A 34 GTKRNGELMRALDGIT-QRVLTDRLR-EMEKDGLVHRESFNELPPRVEYTLTPE--G-YALYDALSSLCHWGET 102 (112)
T ss_dssp SCBCHHHHHHHSTTCC-HHHHHHHHH-HHHHHTSEEEEEECCSSCEEEEEECHH--H-HHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhccCC-HHHHHHHHH-HHHHCCCEEEeecCCCCCeEEEEECHh--H-HHHHHHHHHHHHHHHH
Confidence 468999999999 997 888887776 888899999998876554433333221 0 1233344566677654
No 41
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=68.04 E-value=16 Score=25.44 Aligned_cols=41 Identities=12% Similarity=0.116 Sum_probs=33.2
Q ss_pred cCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecC
Q 025901 105 ETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQ 147 (246)
Q Consensus 105 ~~~k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkIDQ 147 (246)
..+..++..+|++.++++ ...|-..+= .....|+|...=+.
T Consensus 34 ~~~~~~s~~ela~~l~is-~~tvs~~l~-~L~~~glv~~~~~~ 74 (99)
T 3cuo_A 34 SGSPGTSAGELTRITGLS-ASATSQHLA-RMRDEGLIDSQRDA 74 (99)
T ss_dssp TTCCSEEHHHHHHHHCCC-HHHHHHHHH-HHHHTTSEEEEECS
T ss_pred HhCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEEecC
Confidence 445679999999999997 878877776 78889999876553
No 42
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=66.68 E-value=9.6 Score=28.35 Aligned_cols=46 Identities=15% Similarity=0.022 Sum_probs=37.3
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEE
Q 025901 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEV 154 (246)
Q Consensus 107 ~k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkIDQ~~~~v~V 154 (246)
+..++..+|++.++++ ...|=..|= .....|+|.-.-|..++....
T Consensus 45 ~~~~~~~~la~~l~~s-~~tvs~~l~-~L~~~glv~r~~~~~d~r~~~ 90 (145)
T 2a61_A 45 EGPKRPGELSVLLGVA-KSTVTGLVK-RLEADGYLTRTPDPADRRAYF 90 (145)
T ss_dssp HCCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEEETTEEEEEE
T ss_pred cCCCCHHHHHHHHCCC-chhHHHHHH-HHHHCCCeeecCCCCCCceEE
Confidence 3469999999999997 888887765 888899999988876665443
No 43
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=66.45 E-value=21 Score=26.37 Aligned_cols=45 Identities=20% Similarity=0.090 Sum_probs=36.4
Q ss_pred CCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEE
Q 025901 106 TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCF 152 (246)
Q Consensus 106 ~~k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkIDQ~~~~v 152 (246)
.+..++..+|++.++++ ...|=..|= .....|+|.-.-|..++..
T Consensus 49 ~~~~~t~~~la~~l~~s-~~~vs~~l~-~L~~~glv~r~~~~~d~R~ 93 (146)
T 2fbh_A 49 HRDSPTQRELAQSVGVE-GPTLARLLD-GLESQGLVRRLAVAEDRRA 93 (146)
T ss_dssp CSSCCBHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEECCBTTBCS
T ss_pred cCCCCCHHHHHHHhCCC-hhhHHHHHH-HHHHCCCeeecCCCcccCe
Confidence 45679999999999997 888887765 8888999998877655443
No 44
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=66.29 E-value=6.1 Score=31.21 Aligned_cols=48 Identities=15% Similarity=0.281 Sum_probs=37.3
Q ss_pred HhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEE---EecCC
Q 025901 99 TVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG---KLDQL 148 (246)
Q Consensus 99 tllsLa~~~k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~G---kIDQ~ 148 (246)
.|+.+-..+..+||.+|++.++++ ...+-.-+= +....|+|+| .+|..
T Consensus 7 ~il~~L~~~~~~s~~~la~~lg~s-~~tv~~rl~-~L~~~g~i~~~~a~~~~~ 57 (162)
T 3i4p_A 7 KILRILQEDSTLAVADLAKKVGLS-TTPCWRRIQ-KMEEDGVIRRRVALLDPV 57 (162)
T ss_dssp HHHHHHTTCSCSCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSSCCCCCCCCTT
T ss_pred HHHHHHHHCCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeeeceeeeCHH
Confidence 345555667789999999999997 888877776 7888999884 56654
No 45
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=65.80 E-value=34 Score=24.44 Aligned_cols=37 Identities=16% Similarity=0.105 Sum_probs=31.0
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEec
Q 025901 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLD 146 (246)
Q Consensus 108 k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkID 146 (246)
+.++..+|++.++++ ...|-..+= .....|+|...-+
T Consensus 33 ~~~~~~ela~~l~is-~~tv~~~l~-~L~~~gli~~~~~ 69 (114)
T 2oqg_A 33 ADQSASSLATRLPVS-RQAIAKHLN-ALQACGLVESVKV 69 (114)
T ss_dssp SCBCHHHHHHHSSSC-HHHHHHHHH-HHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeeEEec
Confidence 458999999999997 888887776 7888999987655
No 46
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=64.00 E-value=25 Score=27.01 Aligned_cols=64 Identities=11% Similarity=0.036 Sum_probs=45.3
Q ss_pred cchHHHHHHHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEee
Q 025901 87 LVPDQVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFA 157 (246)
Q Consensus 87 L~~~~~~KLr~LtllsLa~~~k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkIDQ~~~~v~V~~~ 157 (246)
|++.+.. .|..|+..+..++-.+|++.++++ ...+=..|= .....|+|.=.-|..++....-+.
T Consensus 29 Lt~~q~~-----vL~~L~~~~~~~~~~eLa~~l~~~-~~tvs~~v~-~Le~~GlV~R~~~~~DrR~~~l~L 92 (151)
T 4aik_A 29 LTQTHWV-----TLYNINRLPPEQSQIQLAKAIGIE-QPSLVRTLD-QLEEKGLITRHTSANDRRAKRIKL 92 (151)
T ss_dssp CCHHHHH-----HHHHHHHSCTTSCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEEECSSCTTCEEEEE
T ss_pred CCHHHHH-----HHHHHHHcCCCCcHHHHHHHHCcC-HHHHHHHHH-HHHhCCCeEeecCCCCCcchhhhc
Confidence 6665532 233344445566778999999997 777777665 888899999999887776554443
No 47
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=62.58 E-value=27 Score=25.68 Aligned_cols=38 Identities=13% Similarity=0.135 Sum_probs=31.2
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecC
Q 025901 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQ 147 (246)
Q Consensus 108 k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkIDQ 147 (246)
+..+..+|++.++++ ...|=.-+= .....|+|..+-+.
T Consensus 30 ~~~~~~eLa~~l~is-~~tvs~hL~-~L~~~GlV~~~~~g 67 (118)
T 3f6o_A 30 GPATVSELAKPFDMA-LPSFMKHIH-FLEDSGWIRTHKQG 67 (118)
T ss_dssp CCEEHHHHHTTCCSC-HHHHHHHHH-HHHHTTSEEEEEET
T ss_pred CCCCHHHHHHHhCcC-HHHHHHHHH-HHHHCCCeEEEecC
Confidence 567999999999997 777776665 67789999987763
No 48
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=62.49 E-value=13 Score=28.06 Aligned_cols=44 Identities=9% Similarity=0.090 Sum_probs=30.2
Q ss_pred CCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE--ecCCCCE
Q 025901 106 TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK--LDQLRRC 151 (246)
Q Consensus 106 ~~k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~Gk--IDQ~~~~ 151 (246)
.+..++..+|++.++++ ...|=..|= .....|+|.-. -|..++.
T Consensus 48 ~~~~~t~~eLa~~l~~~-~~~vs~~l~-~Le~~Glv~r~~~~~~~D~R 93 (151)
T 3kp7_A 48 SIEALTVGQITEKQGVN-KAAVSRRVK-KLLNAELVKLEKPDSNTDQR 93 (151)
T ss_dssp HHSCBCHHHHHHHHCSC-SSHHHHHHH-HHHHTTSEEC----------
T ss_pred HcCCcCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEeeCCCCCCCCC
Confidence 35679999999999997 777777765 88889999963 3555544
No 49
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=62.43 E-value=20 Score=27.08 Aligned_cols=44 Identities=16% Similarity=0.180 Sum_probs=30.2
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEE
Q 025901 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCF 152 (246)
Q Consensus 107 ~k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkIDQ~~~~v 152 (246)
+..++..+|++.++++ ...|=..|= .....|+|.-.-|..+++.
T Consensus 53 ~~~~~~~eLa~~l~~~-~~~vs~~l~-~L~~~Glv~r~~~~~D~R~ 96 (149)
T 4hbl_A 53 ENPQTLNSIGRHLDLS-SNTLTPMLK-RLEQSGWVKRERQQSDKRQ 96 (149)
T ss_dssp SSSEEHHHHHHHHTCC-HHHHHHHHH-HHHHHTSEEC---------
T ss_pred CCCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEeeCCCCCCcce
Confidence 3678999999999997 888887765 8889999998877655543
No 50
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=62.21 E-value=11 Score=29.37 Aligned_cols=48 Identities=13% Similarity=0.139 Sum_probs=37.1
Q ss_pred HHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEe
Q 025901 95 LKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKL 145 (246)
Q Consensus 95 Lr~LtllsLa~~~k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkI 145 (246)
+|.|..+... +++.++-.+|++.++++ ..-|+.++- ..-.+|+|...=
T Consensus 17 l~~L~~La~~-~~~~~~~~~iA~~~~i~-~~~l~kil~-~L~~~Glv~s~r 64 (149)
T 1ylf_A 17 VHILSILKNN-PSSLCTSDYMAESVNTN-PVVIRKIMS-YLKQAGFVYVNR 64 (149)
T ss_dssp HHHHHHHHHS-CGGGCCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEC-
T ss_pred HHHHHHHHhC-CCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCcEEEcc
Confidence 4444444432 45689999999999998 999999988 899999998543
No 51
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=61.42 E-value=14 Score=26.63 Aligned_cols=45 Identities=13% Similarity=0.211 Sum_probs=34.6
Q ss_pred HHHHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEE
Q 025901 93 LKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG 143 (246)
Q Consensus 93 ~KLr~LtllsLa~~~k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~G 143 (246)
.+.+.|.++. .. . +|+.+|+++|+|+ ...|-..|- ..-..|+|.-
T Consensus 18 ~~~~IL~lL~--~~-g-~sa~eLAk~LgiS-k~aVr~~L~-~Le~eG~I~~ 62 (82)
T 1oyi_A 18 IVCEAIKTIG--IE-G-ATAAQLTRQLNME-KREVNKALY-DLQRSAMVYS 62 (82)
T ss_dssp HHHHHHHHHS--SS-T-EEHHHHHHHSSSC-HHHHHHHHH-HHHHHTSSEE
T ss_pred HHHHHHHHHH--Hc-C-CCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEe
Confidence 3455565555 33 3 9999999999997 888888877 7778898875
No 52
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=60.54 E-value=39 Score=23.38 Aligned_cols=39 Identities=26% Similarity=0.343 Sum_probs=33.4
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecC
Q 025901 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQ 147 (246)
Q Consensus 107 ~k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkIDQ 147 (246)
+..++..+|++.++++ ...|=..|= .....|+|...-+.
T Consensus 32 ~~~~s~~ela~~l~is-~~tv~~~l~-~L~~~glv~~~~~~ 70 (109)
T 1sfx_A 32 RGGMRVSEIARELDLS-ARFVRDRLK-VLLKRGFVRREIVE 70 (109)
T ss_dssp HCCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEEEE
T ss_pred cCCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEEEeec
Confidence 3459999999999997 888888776 88999999987776
No 53
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=59.69 E-value=25 Score=27.22 Aligned_cols=48 Identities=10% Similarity=-0.039 Sum_probs=32.5
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEe
Q 025901 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQF 156 (246)
Q Consensus 107 ~k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkIDQ~~~~v~V~~ 156 (246)
+..++..+|++.++++ ...|=..|= .....|+|.-.-|..+++...-.
T Consensus 66 ~~~~t~~eLa~~l~i~-~~tvs~~l~-~Le~~GlV~r~~~~~DrR~~~l~ 113 (166)
T 3deu_A 66 PPDQSQIQLAKAIGIE-QPSLVRTLD-QLEDKGLISRQTCASDRRAKRIK 113 (166)
T ss_dssp CSSEEHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEC--------CEEE
T ss_pred CCCCCHHHHHHHHCCC-HhhHHHHHH-HHHHCCCEEeeCCCCCCCeeEEE
Confidence 4569999999999997 778877765 88889999988877665544333
No 54
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=59.02 E-value=55 Score=25.22 Aligned_cols=79 Identities=18% Similarity=0.135 Sum_probs=54.7
Q ss_pred cchHHHHHHHHHHhhhcccC-CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEE--EecCCCCEEEEEeecCCCCC
Q 025901 87 LVPDQVLKLKQLTVLTLAET-NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG--KLDQLRRCFEVQFAAGRDLR 163 (246)
Q Consensus 87 L~~~~~~KLr~LtllsLa~~-~k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~G--kIDQ~~~~v~V~~~~~Rdl~ 163 (246)
|++.+. +-.|-|...... ..-.+.++|++.++++ .++|...|= ..+..|+|.= +-|..++....-+.
T Consensus 30 Ls~~E~--~lLl~L~~~~~~g~~~ps~~~LA~~~~~s-~~~v~~~L~-~L~~KGlI~i~~~~d~~g~~~~~ydL------ 99 (135)
T 2v79_A 30 LNETEL--ILLLKIKMHLEKGSYFPTPNQLQEGMSIS-VEECTNRLR-MFIQKGFLFIEECEDQNGIKFEKYSL------ 99 (135)
T ss_dssp CCHHHH--HHHHHHHHHHTTTCCSCCHHHHHTTSSSC-HHHHHHHHH-HHHHHTSCEEEEEECTTCCEEEEEEC------
T ss_pred CCHHHH--HHHHHHHHHHhcCCCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEEeEecCCCceEEEeeH------
Confidence 444442 333445555443 4568999999999997 999999987 9999999986 55666555544333
Q ss_pred CCcHHHHHHHHHHHHH
Q 025901 164 PGQLGSMIQTLSNWLT 179 (246)
Q Consensus 164 ~~q~~~l~~~L~~W~~ 179 (246)
..+.++|..+..
T Consensus 100 ----~pL~ekL~~~~~ 111 (135)
T 2v79_A 100 ----QPLWGKLYEYIQ 111 (135)
T ss_dssp ----HHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHH
Confidence 447777776653
No 55
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=58.97 E-value=34 Score=26.37 Aligned_cols=66 Identities=15% Similarity=0.236 Sum_probs=44.8
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEe-ecCCCCCCCcHHHHHHHHHHHHH
Q 025901 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQF-AAGRDLRPGQLGSMIQTLSNWLT 179 (246)
Q Consensus 107 ~k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkIDQ~~~~v~V~~-~~~Rdl~~~q~~~l~~~L~~W~~ 179 (246)
....+|.+|++.++|+ ..-|=..|= .....|+|..+-+..++.+.+.- ..||.+ ......+..|..
T Consensus 35 ~g~~~~~eLa~~lgis-~~tls~~L~-~Le~~GlI~r~~~~~d~~~~y~LT~~G~~l-----~~~l~~l~~w~~ 101 (146)
T 2f2e_A 35 EGLTRFGEFQKSLGLA-KNILAARLR-NLVEHGVMVAVPAESGSHQEYRLTDKGRAL-----FPLLVAIRQWGE 101 (146)
T ss_dssp TTCCSHHHHHHHHCCC-HHHHHHHHH-HHHHTTSEEEEECSSSSCEEEEECHHHHTT-----HHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHhCCC-HHHHHHHHH-HHHHCCCEEEEecCCCCeEEEEECchHHHH-----HHHHHHHHHHHH
Confidence 3578999999999997 777777665 78889999999987765222221 233432 233455666765
No 56
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=58.89 E-value=39 Score=25.00 Aligned_cols=41 Identities=7% Similarity=0.034 Sum_probs=33.7
Q ss_pred ccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE
Q 025901 109 VLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (246)
Q Consensus 109 ~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkIDQ~~~~ 151 (246)
.++..+|++.++++ ...+=..|= .....|+|.-.-|..++.
T Consensus 45 ~~t~~eLa~~l~~~-~~tvs~~l~-~Le~~Glv~r~~~~~D~R 85 (145)
T 3g3z_A 45 SRTQKHIGEKWSLP-KQTVSGVCK-TLAGQGLIEWQEGEQDRR 85 (145)
T ss_dssp SBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEECCCSSCGG
T ss_pred CCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEeeccCCCCCc
Confidence 49999999999997 878887775 888999999877765443
No 57
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=58.81 E-value=17 Score=27.73 Aligned_cols=47 Identities=13% Similarity=0.044 Sum_probs=35.8
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEE
Q 025901 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQ 155 (246)
Q Consensus 107 ~k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkIDQ~~~~v~V~ 155 (246)
+..++..+|++.++++ ...+=..|= .....|+|.-+-|..++....-
T Consensus 62 ~~~~t~~eLa~~l~~~-~~tvs~~l~-~Le~~Glv~r~~~~~DrR~~~l 108 (159)
T 3s2w_A 62 EDGINQESLSDYLKID-KGTTARAIQ-KLVDEGYVFRQRDEKDRRSYRV 108 (159)
T ss_dssp SCSEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEECC---CCEEE
T ss_pred CCCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEEecCCCCCCeeEE
Confidence 3568999999999997 888887765 8889999999887766654433
No 58
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=58.78 E-value=20 Score=27.39 Aligned_cols=47 Identities=13% Similarity=0.058 Sum_probs=37.9
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEe
Q 025901 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQF 156 (246)
Q Consensus 108 k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkIDQ~~~~v~V~~ 156 (246)
..++..+|++.++++ ...|=..|= .....|+|.-.-|..+++...-.
T Consensus 59 ~~~t~~eLa~~l~~~-~~tvs~~l~-~Le~~Glv~r~~~~~DrR~~~l~ 105 (162)
T 3k0l_A 59 PNLSNAKLAERSFIK-PQSANKILQ-DLLANGWIEKAPDPTHGRRILVT 105 (162)
T ss_dssp TTCCHHHHHHHHTSC-GGGHHHHHH-HHHHTTSEEEEECCSSSCCEEEE
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCcCeEecCCCCcCCeeEeE
Confidence 469999999999997 777877765 88889999999987766544443
No 59
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=57.81 E-value=15 Score=26.91 Aligned_cols=43 Identities=9% Similarity=0.155 Sum_probs=34.4
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE
Q 025901 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (246)
Q Consensus 107 ~k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkIDQ~~~~ 151 (246)
+..++..+|++.++++ ...|-..|= .....|+|.-.-|..++.
T Consensus 45 ~~~~~~~ela~~l~~~-~~tvs~~l~-~L~~~gli~r~~~~~d~r 87 (139)
T 3bja_A 45 SGKVSMSKLIENMGCV-PSNMTTMIQ-RMKRDGYVMTEKNPNDQR 87 (139)
T ss_dssp SCSEEHHHHHHHCSSC-CTTHHHHHH-HHHHTTSEEEEECSSCTT
T ss_pred cCCcCHHHHHHHHCCC-hhHHHHHHH-HHHHCCCeeeccCCCCCc
Confidence 4569999999999997 777777665 788899999887765444
No 60
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=56.53 E-value=33 Score=24.03 Aligned_cols=39 Identities=21% Similarity=0.252 Sum_probs=31.8
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCC
Q 025901 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQL 148 (246)
Q Consensus 108 k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkIDQ~ 148 (246)
+..++.+|++.++++ ...|-.-+= .....|+|..+-+..
T Consensus 35 ~~~~~~ela~~l~is-~~tvs~~L~-~L~~~Glv~~~~~g~ 73 (98)
T 3jth_A 35 QELSVGELCAKLQLS-QSALSQHLA-WLRRDGLVTTRKEAQ 73 (98)
T ss_dssp SCEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEECCTT
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEEEEeCC
Confidence 689999999999997 777877665 777899998875543
No 61
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=56.40 E-value=17 Score=28.05 Aligned_cols=34 Identities=3% Similarity=0.074 Sum_probs=30.5
Q ss_pred ChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEec
Q 025901 111 PYDELMEELDVTNVRELEDFLINECMYTGIVRGKLD 146 (246)
Q Consensus 111 sy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkID 146 (246)
+-++|++.++|| ..-|+.++- ..-.+|||...=.
T Consensus 25 s~~~IA~~~~i~-~~~l~kIl~-~L~~aGlv~s~rG 58 (145)
T 1xd7_A 25 SSEIIADSVNTN-PVVVRRMIS-LLKKADILTSRAG 58 (145)
T ss_dssp CHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEECCSS
T ss_pred CHHHHHHHHCcC-HHHHHHHHH-HHHHCCceEeecC
Confidence 999999999998 999999998 8999999976543
No 62
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=56.37 E-value=26 Score=26.53 Aligned_cols=81 Identities=16% Similarity=0.156 Sum_probs=50.9
Q ss_pred cchHHHHHHHHHHhhhcccCC-cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEeecCCCCCCC
Q 025901 87 LVPDQVLKLKQLTVLTLAETN-KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPG 165 (246)
Q Consensus 87 L~~~~~~KLr~LtllsLa~~~-k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkIDQ~~~~v~V~~~~~Rdl~~~ 165 (246)
|++.+. +-.+.|......+ .-++.++|++.++++ ..+|-..|= ..+..|+|.=+-+.... ++....-
T Consensus 30 Lt~~e~--~vll~L~~~~~~~~~~ps~~~LA~~l~~s-~~~V~~~l~-~Le~kGlI~~~~~~~~~--------g~~~~~Y 97 (128)
T 2vn2_A 30 LGEGEL--VLLLHMQSFFEEGVLFPTPAELAERMTVS-AAECMEMVR-RLLQKGMIAIEEHTDEQ--------GIRNEKY 97 (128)
T ss_dssp CCHHHH--HHHHHHHHHHTTTCSSCCHHHHHHTSSSC-HHHHHHHHH-HHHHTTSSEECC------------------CE
T ss_pred CCHHHH--HHHHHHHHHHhcCCCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEEeEECCC--------CcEEEEE
Confidence 555543 3445555554433 348999999999997 999999887 99999999876654331 2222223
Q ss_pred cHHHHHHHHHHHHH
Q 025901 166 QLGSMIQTLSNWLT 179 (246)
Q Consensus 166 q~~~l~~~L~~W~~ 179 (246)
++..+.++|..+..
T Consensus 98 dl~pl~~kL~~~~~ 111 (128)
T 2vn2_A 98 TLEPLWEKLVHHLY 111 (128)
T ss_dssp ECHHHHHHHHHHHH
T ss_pred ehHHHHHHHHHHHH
Confidence 45667777776653
No 63
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=56.27 E-value=18 Score=28.79 Aligned_cols=47 Identities=15% Similarity=0.219 Sum_probs=36.5
Q ss_pred HHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE
Q 025901 95 LKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (246)
Q Consensus 95 Lr~LtllsLa~~~k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~Gk 144 (246)
+|.|..+... ++..+|-.+|++.++|+ ..-|+..+- ..-.+|+|...
T Consensus 15 lr~l~~La~~-~~~~~s~~~IA~~~~is-~~~l~kil~-~L~~aGlv~s~ 61 (162)
T 3k69_A 15 VHSILYLDAH-RDSKVASRELAQSLHLN-PVMIRNILS-VLHKHGYLTGT 61 (162)
T ss_dssp HHHHHHHHTT-TTSCBCHHHHHHHHTSC-GGGTHHHHH-HHHHTTSSEEE
T ss_pred HHHHHHHHhC-CCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEee
Confidence 3444444432 35679999999999997 999999887 88899999765
No 64
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=55.88 E-value=81 Score=25.56 Aligned_cols=35 Identities=23% Similarity=0.226 Sum_probs=30.2
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE
Q 025901 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (246)
Q Consensus 108 k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~Gk 144 (246)
..+++.+|++.++++ ...|-.-+= .....|+|.+.
T Consensus 32 ~~~s~~eLA~~lglS-~stv~~~l~-~Le~~GlI~~~ 66 (192)
T 1uly_A 32 KEMTISQLSEILGKT-PQTIYHHIE-KLKEAGLVEVK 66 (192)
T ss_dssp CCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEE
Confidence 569999999999997 888877766 78889999987
No 65
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=55.65 E-value=14 Score=26.17 Aligned_cols=42 Identities=12% Similarity=0.095 Sum_probs=33.5
Q ss_pred HhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccE
Q 025901 99 TVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVR 142 (246)
Q Consensus 99 tllsLa~~~k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~ 142 (246)
.|+.+....+.++.++|++.++++ ...+..-+- .....|+|.
T Consensus 6 ~Il~~L~~~g~vsv~eLa~~l~VS-~~TIRrdL~-~Le~~G~l~ 47 (78)
T 1xn7_A 6 QVRDLLALRGRMEAAQISQTLNTP-QPMINAMLQ-QLESMGKAV 47 (78)
T ss_dssp HHHHHHHHSCSBCHHHHHHHTTCC-HHHHHHHHH-HHHHHTSEE
T ss_pred HHHHHHHHcCCCcHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEE
Confidence 455556678899999999999997 888887776 777788763
No 66
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=55.62 E-value=29 Score=26.19 Aligned_cols=42 Identities=19% Similarity=0.199 Sum_probs=34.3
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE
Q 025901 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (246)
Q Consensus 108 k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkIDQ~~~~ 151 (246)
..++..+|++.++++ ...|=..|= .....|+|.-.-|..++.
T Consensus 57 ~~~t~~ela~~l~is-~~tvs~~l~-~Le~~Gli~r~~~~~d~R 98 (154)
T 2eth_A 57 GPKKMKEIAEFLSTT-KSNVTNVVD-SLEKRGLVVREMDPVDRR 98 (154)
T ss_dssp CCBCHHHHHHHTTSC-HHHHHHHHH-HHHHTTSEEEEECTTTSS
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEeeCCCCCcc
Confidence 369999999999997 778877765 888899999887765444
No 67
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=55.47 E-value=30 Score=23.61 Aligned_cols=36 Identities=22% Similarity=0.196 Sum_probs=30.2
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE
Q 025901 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (246)
Q Consensus 107 ~k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~Gk 144 (246)
...++..+|++.++++ ...|-..+- .....|+|...
T Consensus 12 ~~~~s~~eLa~~lgvs-~~tv~r~L~-~L~~~GlI~~~ 47 (81)
T 2htj_A 12 HNGGKTAEIAEALAVT-DYQARYYLL-LLEKAGMVQRS 47 (81)
T ss_dssp SCCCCHHHHHHHHTSC-HHHHHHHHH-HHHHHTSEEEE
T ss_pred cCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEe
Confidence 3569999999999997 888888776 78889999853
No 68
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=54.88 E-value=24 Score=26.25 Aligned_cols=44 Identities=18% Similarity=0.163 Sum_probs=34.0
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEE
Q 025901 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFE 153 (246)
Q Consensus 108 k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkIDQ~~~~v~ 153 (246)
..++..+|++.++++ ...|=..|= .....|+|.-.-|..++...
T Consensus 55 ~~~t~~ela~~l~~~-~~tvs~~l~-~Le~~Glv~r~~~~~d~R~~ 98 (150)
T 2rdp_A 55 GDLTVGELSNKMYLA-CSTTTDLVD-RMERNGLVARVRDEHDRRVV 98 (150)
T ss_dssp CSBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEECCC---CE
T ss_pred CCCCHHHHHHHHCCC-chhHHHHHH-HHHHCCCeeecCCCCCccee
Confidence 469999999999997 888887765 88889999988776555433
No 69
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=54.30 E-value=52 Score=25.59 Aligned_cols=99 Identities=11% Similarity=0.128 Sum_probs=55.2
Q ss_pred ccChHHHHHHcCCCChHHHHHHHHHHhHhcCccE-EEecCCCCEEEEEeecCCCCCCCcHH----------------HHH
Q 025901 109 VLPYDELMEELDVTNVRELEDFLINECMYTGIVR-GKLDQLRRCFEVQFAAGRDLRPGQLG----------------SMI 171 (246)
Q Consensus 109 ~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~-GkIDQ~~~~v~V~~~~~Rdl~~~q~~----------------~l~ 171 (246)
.++..++++.+||+ .+.+-.|- + .|++. ..-+..+. |.++.+++. .+.
T Consensus 16 ~~~I~evA~~~gvs-~~tLR~Ye--~---~Gll~p~~r~~~g~---------R~Y~~~dl~~l~~I~~lr~~G~sL~eIk 80 (148)
T 3gpv_A 16 YYTIGQVAKMQHLT-ISQIRYYD--K---QGLFPFLQRNEKGD---------RIFNEEALKYLEMILCLKNTGMPIQKIK 80 (148)
T ss_dssp CBCHHHHHHHTTCC-HHHHHHHH--H---TTCCTTCEECTTCC---------EEBCHHHHHHHHHHHHHHTTTCCHHHHH
T ss_pred ceeHHHHHHHHCcC-HHHHHHHH--H---CCCCCCCcCCCCCC---------eecCHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 58899999999997 88888773 2 48874 44454433 333333332 222
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcch
Q 025901 172 QTLSNWL---TTSDNLLISIQEKIKWADSMNEMDKKHRKDLEEKVEEAKKSLSH 222 (246)
Q Consensus 172 ~~L~~W~---~~~~~vl~~Ie~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ 222 (246)
.-|..|. ..+......++++........++-.+..+.++..++..+..+..
T Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~ 134 (148)
T 3gpv_A 81 QFIDWSMEGDSTILHRLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDEISS 134 (148)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3333222 23555566666666666666555556666666666665555433
No 70
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=53.64 E-value=16 Score=27.35 Aligned_cols=43 Identities=2% Similarity=-0.083 Sum_probs=29.9
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE
Q 025901 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (246)
Q Consensus 107 ~k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkIDQ~~~~ 151 (246)
...++..+|++.++++ ...|=..|= .....|+|.-.-|..++.
T Consensus 52 ~~~~t~~ela~~l~~~-~~tvs~~l~-~Le~~Glv~r~~~~~D~R 94 (148)
T 3nrv_A 52 ASDCSVQKISDILGLD-KAAVSRTVK-KLEEKKYIEVNGHSEDKR 94 (148)
T ss_dssp SSSBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEC--------
T ss_pred CCCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEeecCCCCcc
Confidence 3489999999999997 878877765 888899999876665543
No 71
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=53.24 E-value=20 Score=26.69 Aligned_cols=58 Identities=10% Similarity=0.130 Sum_probs=39.2
Q ss_pred CcchHHHHHHHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE
Q 025901 86 QLVPDQVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (246)
Q Consensus 86 ~L~~~~~~KLr~LtllsLa~~~k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkIDQ~~~~ 151 (246)
.|++.+..-|..| . ....++..+|++.++++ ...+=..|= .....|+|.-.-|..++.
T Consensus 34 ~lt~~~~~iL~~l-----~-~~~~~t~~eLa~~l~~~-~~~vs~~l~-~L~~~Glv~r~~~~~D~R 91 (143)
T 3oop_A 34 DVTPEQWSVLEGI-----E-ANEPISQKEIALWTKKD-TPTVNRIVD-VLLRKELIVREISTEDRR 91 (143)
T ss_dssp SSCHHHHHHHHHH-----H-HHSSEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEC----CC
T ss_pred CCCHHHHHHHHHH-----H-HcCCcCHHHHHHHHCCC-HhhHHHHHH-HHHHCCCeeccCCCccCc
Confidence 3666664333322 1 22678999999999997 888887765 889999999887665544
No 72
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=52.51 E-value=27 Score=26.14 Aligned_cols=43 Identities=12% Similarity=0.106 Sum_probs=35.0
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE
Q 025901 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (246)
Q Consensus 107 ~k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkIDQ~~~~ 151 (246)
+..++..+|++.++++ ...|=..|= .....|+|.-.-|..++.
T Consensus 49 ~~~~t~~ela~~l~~s-~~tvs~~l~-~Le~~glv~r~~~~~d~R 91 (155)
T 1s3j_A 49 HGSLKVSEIAERMEVK-PSAVTLMAD-RLEQKNLIARTHNTKDRR 91 (155)
T ss_dssp HSEEEHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEEECSSCTT
T ss_pred cCCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEeecCCCCCCc
Confidence 3468999999999997 888887775 888999999887764443
No 73
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=52.01 E-value=32 Score=25.48 Aligned_cols=47 Identities=13% Similarity=0.010 Sum_probs=33.8
Q ss_pred CCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEE
Q 025901 106 TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEV 154 (246)
Q Consensus 106 ~~k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkIDQ~~~~v~V 154 (246)
.+..++..+|++.++++ ...|=..|= .....|+|.-.-|..+++...
T Consensus 47 ~~~~~t~~eLa~~l~~~-~~tvs~~l~-~L~~~Glv~r~~~~~D~R~~~ 93 (140)
T 3hsr_A 47 NDEKLNIKKLGERVFLD-SGTLTPLLK-KLEKKDYVVRTREEKDERNLQ 93 (140)
T ss_dssp TTCEEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEC-------CE
T ss_pred HcCCcCHHHHHHHHCCC-hhhHHHHHH-HHHHCCCeEecCCCCCcceee
Confidence 35689999999999997 888887776 889999999888776655443
No 74
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=51.65 E-value=19 Score=27.65 Aligned_cols=42 Identities=14% Similarity=0.222 Sum_probs=33.1
Q ss_pred cCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE---ecCC
Q 025901 105 ETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK---LDQL 148 (246)
Q Consensus 105 ~~~k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~Gk---IDQ~ 148 (246)
..+..+|+.+|++.++++ ...+=..+= .....|+|.+. +|..
T Consensus 17 ~~~~~~s~~ela~~lg~s-~~tv~~~l~-~L~~~G~i~~~~~~~d~~ 61 (150)
T 2w25_A 17 AADGRATLSELATRAGLS-VSAVQSRVR-RLESRGVVQGYSARINPE 61 (150)
T ss_dssp HHCTTCCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEEEEEECTG
T ss_pred HHcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEEEeccChh
Confidence 344679999999999997 888887776 88889999754 4553
No 75
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=51.47 E-value=21 Score=26.87 Aligned_cols=44 Identities=11% Similarity=0.066 Sum_probs=32.0
Q ss_pred CCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE
Q 025901 106 TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (246)
Q Consensus 106 ~~k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkIDQ~~~~ 151 (246)
.+..++..+|++.++++ ...|=..|= .....|+|.-.-|..++.
T Consensus 54 ~~~~~t~~ela~~l~i~-~~tvs~~l~-~Le~~Glv~r~~~~~d~R 97 (155)
T 3cdh_A 54 DNDAMMITRLAKLSLME-QSRMTRIVD-QMDARGLVTRVADAKDKR 97 (155)
T ss_dssp SCSCBCHHHHHHHTTCC-HHHHHHHHH-HHHHTTSEEECC------
T ss_pred HCCCcCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEeccCCCcCC
Confidence 34579999999999997 888887765 888899999776654443
No 76
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=51.29 E-value=50 Score=24.88 Aligned_cols=43 Identities=23% Similarity=0.125 Sum_probs=33.5
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE
Q 025901 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (246)
Q Consensus 107 ~k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkIDQ~~~~ 151 (246)
+..++..+|++.++++ ...|=..|= .....|+|.-.-|..++.
T Consensus 64 ~~~~t~~ela~~l~is-~~tvs~~l~-~Le~~Gli~r~~~~~d~R 106 (162)
T 3cjn_A 64 KDGLPIGTLGIFAVVE-QSTLSRALD-GLQADGLVRREVDSDDQR 106 (162)
T ss_dssp SCSEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEEC--CCS
T ss_pred CCCCCHHHHHHHHCCC-hhHHHHHHH-HHHHCCCEEecCCCCCCC
Confidence 3468999999999997 888887765 888899999887664443
No 77
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=50.90 E-value=40 Score=24.66 Aligned_cols=45 Identities=11% Similarity=0.077 Sum_probs=35.5
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEE
Q 025901 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEV 154 (246)
Q Consensus 108 k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkIDQ~~~~v~V 154 (246)
..++..+|++.++++ ...+=..|= .....|+|.-.-|..++....
T Consensus 46 ~~~t~~ela~~l~~~-~~tvs~~l~-~Le~~Gli~r~~~~~D~R~~~ 90 (139)
T 3eco_A 46 DGLTQNDIAKALQRT-GPTVSNLLR-NLERKKLIYRYVDAQDTRRKN 90 (139)
T ss_dssp TCEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEECCC--CCEE
T ss_pred CCcCHHHHHHHhCCC-cccHHHHHH-HHHHCCCEeecCCCCCCCeee
Confidence 579999999999997 888887765 888899999888876655433
No 78
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=50.31 E-value=17 Score=24.52 Aligned_cols=45 Identities=20% Similarity=0.217 Sum_probs=33.4
Q ss_pred HHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEE
Q 025901 95 LKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG 143 (246)
Q Consensus 95 Lr~LtllsLa~~~k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~G 143 (246)
.+.|.++. ...+.++..+|++.|+++ ...|...|= ..-..|+|..
T Consensus 13 ~~IL~~L~--~~~~~~s~~eLA~~lgls-r~tv~~~l~-~L~~~G~I~~ 57 (67)
T 2heo_A 13 QKILQVLS--DDGGPVAIFQLVKKCQVP-KKTLNQVLY-RLKKEDRVSS 57 (67)
T ss_dssp HHHHHHHH--HHCSCEEHHHHHHHHCSC-HHHHHHHHH-HHHHTTSEEE
T ss_pred HHHHHHHH--HcCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCcEec
Confidence 33444443 344679999999999998 888998775 7777788754
No 79
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=48.67 E-value=38 Score=25.18 Aligned_cols=42 Identities=12% Similarity=0.123 Sum_probs=34.5
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE
Q 025901 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (246)
Q Consensus 108 k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkIDQ~~~~ 151 (246)
..++..+|++.++++ ...+-..|= .....|+|.-.-|..++.
T Consensus 53 ~~~t~~ela~~l~~~-~~~vs~~l~-~Le~~Glv~r~~~~~d~R 94 (152)
T 3bj6_A 53 PGATAPQLGAALQMK-RQYISRILQ-EVQRAGLIERRTNPEHAR 94 (152)
T ss_dssp TTEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEECCSSSTT
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCeeecCCccccc
Confidence 468999999999997 888887765 888999999887764443
No 80
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=48.25 E-value=48 Score=24.26 Aligned_cols=59 Identities=19% Similarity=0.214 Sum_probs=36.8
Q ss_pred EEeecCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcchhccc
Q 025901 154 VQFAAGRDLRPGQLGSMIQTLSNWLTTSDNLLISIQEKIKWADSMNEMDKKHRKDLEEKVEEAKKSLSHKLHT 226 (246)
Q Consensus 154 V~~~~~Rdl~~~q~~~l~~~L~~W~~~~~~vl~~Ie~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ 226 (246)
|.+.+|+.|=....+.....|..=.+.++..+..++.++. .++.++.+++..+..-++.
T Consensus 55 vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~--------------~l~~~l~~lk~~l~~~~~~ 113 (117)
T 2zqm_A 55 VYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNALERQEK--------------KLNEKLKELTAQIQSALRP 113 (117)
T ss_dssp EEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHSC
T ss_pred hHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHcc
Confidence 4467788887777778777777777766666655555544 4444555555555544433
No 81
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=48.19 E-value=15 Score=26.69 Aligned_cols=44 Identities=14% Similarity=0.076 Sum_probs=35.3
Q ss_pred HhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE
Q 025901 99 TVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (246)
Q Consensus 99 tllsLa~~~k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~Gk 144 (246)
.|+.+....+.++.++|++.++++ ...|..-+- .....|+|.=.
T Consensus 6 ~Il~~L~~~g~vsv~eLA~~l~VS-~~TIRrDL~-~Le~~G~l~R~ 49 (87)
T 2k02_A 6 EVRDMLALQGRMEAKQLSARLQTP-QPLIDAMLE-RMEAMGKVVRI 49 (87)
T ss_dssp HHHHHHHHSCSEEHHHHHHHTTCC-HHHHHHHHH-HHHTTCCSEEE
T ss_pred HHHHHHHHcCCCcHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEE
Confidence 345555678899999999999997 888888776 88888877644
No 82
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=46.46 E-value=1.2e+02 Score=24.78 Aligned_cols=38 Identities=18% Similarity=0.275 Sum_probs=31.8
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecC
Q 025901 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQ 147 (246)
Q Consensus 108 k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkIDQ 147 (246)
+..++.+|++.++++ ...|=.-+= .....|+|...-+.
T Consensus 27 ~~~s~~eLa~~l~is-~stvs~hLk-~Le~~GLV~~~~~~ 64 (202)
T 2p4w_A 27 RPYFVSELSRELGVG-QKAVLEHLR-ILEEAGLIESRVEK 64 (202)
T ss_dssp SCEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEECC
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCceEEEeec
Confidence 568999999999997 777877665 78889999998773
No 83
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=46.18 E-value=82 Score=22.80 Aligned_cols=45 Identities=13% Similarity=0.006 Sum_probs=36.7
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEE
Q 025901 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEV 154 (246)
Q Consensus 108 k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkIDQ~~~~v~V 154 (246)
..++..+|++.++++ ...|-..|= .....|+|.-.-|..++....
T Consensus 49 ~~~t~~ela~~l~~s-~~~vs~~l~-~Le~~glv~r~~~~~d~R~~~ 93 (142)
T 2fbi_A 49 GEMESYQLANQACIL-RPSMTGVLA-RLERDGIVRRWKAPKDQRRVY 93 (142)
T ss_dssp CSEEHHHHHHHTTCC-HHHHHHHHH-HHHHTTSEEEEEETTEEEEEE
T ss_pred CCCCHHHHHHHHCCC-HhHHHHHHH-HHHHCCCEEeecCCCCCCeeE
Confidence 359999999999997 888888776 888999999888876655443
No 84
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=45.47 E-value=46 Score=24.18 Aligned_cols=60 Identities=17% Similarity=0.127 Sum_probs=43.0
Q ss_pred CcchHHHHHHHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEE
Q 025901 86 QLVPDQVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFE 153 (246)
Q Consensus 86 ~L~~~~~~KLr~LtllsLa~~~k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkIDQ~~~~v~ 153 (246)
.+++.+..=| ..+ .. +..++..+|++.++++ ...|-..|= .....|+|.-.-|..++...
T Consensus 35 ~l~~~~~~iL---~~l--~~-~~~~t~~ela~~l~~~-~~tvs~~l~-~L~~~glv~r~~~~~d~R~~ 94 (140)
T 2nnn_A 35 GLTPTQWAAL---VRL--GE-TGPCPQNQLGRLTAMD-AATIKGVVE-RLDKRGLIQRSADPDDGRRL 94 (140)
T ss_dssp CCCHHHHHHH---HHH--HH-HSSBCHHHHHHHTTCC-HHHHHHHHH-HHHHTTCEEEEEETTEEEEE
T ss_pred CCCHHHHHHH---HHH--HH-cCCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEeeCCCCCCCee
Confidence 5776653322 222 22 2479999999999997 888888775 88899999988777655543
No 85
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=45.32 E-value=18 Score=25.54 Aligned_cols=34 Identities=6% Similarity=0.222 Sum_probs=28.7
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccE
Q 025901 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVR 142 (246)
Q Consensus 107 ~k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~ 142 (246)
+...+..+|+++++++ ...|..-+- ..-..|+|.
T Consensus 22 g~~psv~EIa~~lgvS-~~TVrr~L~-~Le~kG~I~ 55 (77)
T 2jt1_A 22 GAPVKTRDIADAAGLS-IYQVRLYLE-QLHDVGVLE 55 (77)
T ss_dssp TSCEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEE
T ss_pred CCCcCHHHHHHHHCCC-HHHHHHHHH-HHHHCCcEE
Confidence 4789999999999995 888888877 777788875
No 86
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=45.30 E-value=32 Score=24.06 Aligned_cols=45 Identities=13% Similarity=0.187 Sum_probs=32.9
Q ss_pred HHHHhhhc-ccCCcccChHHHHHHcCCCChHH-HHHHHHHHhHhcCccE
Q 025901 96 KQLTVLTL-AETNKVLPYDELMEELDVTNVRE-LEDFLINECMYTGIVR 142 (246)
Q Consensus 96 r~LtllsL-a~~~k~isy~~I~~~L~i~~~~e-vE~llI~~aI~~gLI~ 142 (246)
+.+.++.+ ...+..++..+|++.++++ ... +=..|= .....|+|.
T Consensus 16 ~~l~~L~~l~~~~~~~t~~eLa~~l~is-~~t~vs~~l~-~Le~~Glv~ 62 (95)
T 2pg4_A 16 RILPTLLEFEKKGYEPSLAEIVKASGVS-EKTFFMGLKD-RLIRAGLVK 62 (95)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHCCC-HHHHHTTHHH-HHHHTTSEE
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHCCC-chHHHHHHHH-HHHHCCCee
Confidence 34444433 3444479999999999997 777 776665 788899998
No 87
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=45.25 E-value=49 Score=24.48 Aligned_cols=55 Identities=13% Similarity=0.175 Sum_probs=39.5
Q ss_pred CcchHHHHHHHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE
Q 025901 86 QLVPDQVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (246)
Q Consensus 86 ~L~~~~~~KLr~LtllsLa~~~k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~Gk 144 (246)
.|++.+..-|+ .|..++..+..++..+|++.++++ ...|=..|= .....|+|.-.
T Consensus 10 ~lt~~~~~~L~--~l~~l~~~~~~~s~~ela~~l~is-~~tv~~~l~-~Le~~Gli~r~ 64 (139)
T 2x4h_A 10 NLSRREFSYLL--TIKRYNDSGEGAKINRIAKDLKIA-PSSVFEEVS-HLEEKGLVKKK 64 (139)
T ss_dssp -CCHHHHHHHH--HHHHHHTTTSCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEE
T ss_pred hcCHHHHHHHH--HHHHHHhcCCCcCHHHHHHHhCCC-hHHHHHHHH-HHHHCCCEEec
Confidence 46666544444 344555567789999999999997 777777665 77788998753
No 88
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=44.70 E-value=71 Score=24.69 Aligned_cols=28 Identities=18% Similarity=0.252 Sum_probs=22.1
Q ss_pred cChHHHHHHcCCCChHHHHHHHHHHhHhcCccEE
Q 025901 110 LPYDELMEELDVTNVRELEDFLINECMYTGIVRG 143 (246)
Q Consensus 110 isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~G 143 (246)
++..++++.+||+ .+.|-.|-= .|+|..
T Consensus 3 ~~I~e~A~~~gvs-~~tLR~Ye~-----~GLl~p 30 (142)
T 3gp4_A 3 LNIKEASEKSGVS-ADTIRYYER-----IGLIPP 30 (142)
T ss_dssp BCHHHHHHHHTSC-HHHHHHHHH-----HTSSCC
T ss_pred CcHHHHHHHHCcC-HHHHHHHHH-----CCCCCC
Confidence 5788999999997 888887732 377765
No 89
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=44.63 E-value=63 Score=22.73 Aligned_cols=39 Identities=18% Similarity=0.152 Sum_probs=31.0
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCC
Q 025901 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQL 148 (246)
Q Consensus 108 k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkIDQ~ 148 (246)
+..++.+|++.++++ ...|=.-+= .....|+|..+-+..
T Consensus 35 ~~~~~~ela~~l~is-~~tvs~~L~-~L~~~Glv~~~~~g~ 73 (102)
T 3pqk_A 35 GEFSVGELEQQIGIG-QPTLSQQLG-VLRESGIVETRRNIK 73 (102)
T ss_dssp CCBCHHHHHHHHTCC-TTHHHHHHH-HHHHTTSEEEECSSS
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEEEEeCC
Confidence 458999999999997 667766665 677889999876554
No 90
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=44.61 E-value=30 Score=25.68 Aligned_cols=38 Identities=18% Similarity=0.204 Sum_probs=30.2
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEec
Q 025901 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLD 146 (246)
Q Consensus 107 ~k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkID 146 (246)
.+.+++.+|++.++++ ...|-..+= .....|+|...=+
T Consensus 54 ~~~~s~~eLa~~l~is-~stvs~~L~-~L~~~Glv~~~~~ 91 (122)
T 1u2w_A 54 DEELCVCDIANILGVT-IANASHHLR-TLYKQGVVNFRKE 91 (122)
T ss_dssp SSCEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEC--
T ss_pred CCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEEEEE
Confidence 4568999999999997 888887765 7778999987533
No 91
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=43.32 E-value=92 Score=22.61 Aligned_cols=61 Identities=23% Similarity=0.211 Sum_probs=42.0
Q ss_pred cchHHHHHHHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCC-EEEE
Q 025901 87 LVPDQVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRR-CFEV 154 (246)
Q Consensus 87 L~~~~~~KLr~LtllsLa~~~k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkIDQ~~~-~v~V 154 (246)
+++.+ .+.|.++.+.. ..++..+|++.++++ ...+=..+= .....|+|.-.-|..++ .+.+
T Consensus 24 l~~~~---~~il~~L~~~~--~~~t~~ela~~l~~~-~stvs~~l~-~L~~~G~v~r~~~~~d~r~~~~ 85 (152)
T 1ku9_A 24 LNKSV---GAVYAILYLSD--KPLTISDIMEELKIS-KGNVSMSLK-KLEELGFVRKVWIKGERKNYYE 85 (152)
T ss_dssp CCHHH---HHHHHHHHHCS--SCEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEECCTTCSSCEEE
T ss_pred CChhH---HHHHHHHHHcC--CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEEecCCCceEEEe
Confidence 45544 33344443332 469999999999997 777777665 78889999988766554 3344
No 92
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=42.42 E-value=36 Score=25.68 Aligned_cols=43 Identities=9% Similarity=0.047 Sum_probs=30.1
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE
Q 025901 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (246)
Q Consensus 107 ~k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkIDQ~~~~ 151 (246)
+..++..+|++.++++ ...|=..|= .....|+|.-.-|..++.
T Consensus 61 ~~~~t~~ela~~l~is-~~tvs~~l~-~Le~~glv~r~~~~~d~R 103 (162)
T 2fa5_A 61 YPGSSASEVSDRTAMD-KVAVSRAVA-RLLERGFIRRETHGDDRR 103 (162)
T ss_dssp STTCCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEC--------
T ss_pred CCCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEeeecCCCCCC
Confidence 4579999999999997 778887765 888899998776654443
No 93
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=41.92 E-value=41 Score=24.09 Aligned_cols=37 Identities=11% Similarity=0.119 Sum_probs=30.5
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEec
Q 025901 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLD 146 (246)
Q Consensus 108 k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkID 146 (246)
+..++.+|++.++++ ...|-..+= .....|+|..+=+
T Consensus 38 ~~~~~~ela~~l~is-~stvs~~L~-~L~~~Glv~~~~~ 74 (106)
T 1r1u_A 38 SEASVGHISHQLNLS-QSNVSHQLK-LLKSVHLVKAKRQ 74 (106)
T ss_dssp CCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEEEEe
Confidence 458999999999997 888877765 7778999987654
No 94
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18
Probab=41.18 E-value=1.6e+02 Score=24.69 Aligned_cols=76 Identities=11% Similarity=0.030 Sum_probs=51.0
Q ss_pred CCchHHHHHHHHHhcCChhhHhhhhCCCCCcchH---HHHHHHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHH
Q 025901 57 TENSKYLDMLRLFAHGTWSDYKNNAGHLPQLVPD---QVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLI 132 (246)
Q Consensus 57 ~~~~~~~~LL~iFa~Gt~~dy~~~~~~l~~L~~~---~~~KLr~LtllsLa~~~k~isy~~I~~~L~i~~~~evE~llI 132 (246)
.+-...+.|=+.+-.|+|..|.+....-+++.+. -...+|.=..-.+......||.+.+++-|+..+..+++.|+-
T Consensus 97 ~~I~~i~~L~~~L~~~~y~~fW~~l~~~~~l~~~i~gf~dsIR~~I~~~i~~aY~sI~~~~la~lLg~~s~~el~~fi~ 175 (226)
T 1rz4_A 97 RPIRQILYLGDLLETCHFQAFWQALDENMDLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSDSQLKVWMS 175 (226)
T ss_dssp TTHHHHHHHHHHHHTTCHHHHHHHSCTTCHHHHTSTTHHHHHHHHHHHHHHHHCSEECHHHHHHHTTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHhcChhHHHHHhHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHcCCCHHHHHHHHH
Confidence 3456778888999999999987643322322211 123444433333444688999999999996445899999987
No 95
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=40.82 E-value=28 Score=26.26 Aligned_cols=45 Identities=18% Similarity=0.166 Sum_probs=30.2
Q ss_pred CCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEE
Q 025901 106 TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCF 152 (246)
Q Consensus 106 ~~k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkIDQ~~~~v 152 (246)
.+..++..+|++.++++ ...|=..|= .....|+|.-.-|..++..
T Consensus 59 ~~~~~~~~ela~~l~i~-~~tvs~~l~-~Le~~Gli~r~~~~~d~R~ 103 (160)
T 3boq_A 59 NPDGLSMGKLSGALKVT-NGNVSGLVN-RLIKDGMVVKAMSADDRRS 103 (160)
T ss_dssp CTTCEEHHHHHHHCSSC-CSCHHHHHH-HHHHHTSEEEC--------
T ss_pred cCCCCCHHHHHHHHCCC-hhhHHHHHH-HHHHCCCEEeecCCCCCCe
Confidence 44579999999999997 666766664 7888899998776654443
No 96
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=40.06 E-value=58 Score=23.65 Aligned_cols=44 Identities=18% Similarity=0.089 Sum_probs=35.9
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEE
Q 025901 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFE 153 (246)
Q Consensus 108 k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkIDQ~~~~v~ 153 (246)
..++..+|++.++++ ...|=..|= .....|+|.-.-|..++...
T Consensus 47 ~~~~~~~la~~l~~~-~~tvs~~l~-~L~~~gli~r~~~~~d~R~~ 90 (138)
T 1jgs_A 47 ACITPVELKKVLSVD-LGALTRMLD-RLVCKGWVERLPNPNDKRGV 90 (138)
T ss_dssp SSBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEECTTCSSCE
T ss_pred CCCCHHHHHHHHCCC-hHHHHHHHH-HHHHCCCEEecCCcccCcee
Confidence 468999999999997 888887765 88899999988887655543
No 97
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=39.95 E-value=56 Score=26.08 Aligned_cols=49 Identities=14% Similarity=0.161 Sum_probs=34.9
Q ss_pred HHHHHHHhhhccc-CCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCc-cEE
Q 025901 93 LKLKQLTVLTLAE-TNKVLPYDELMEELDVTNVRELEDFLINECMYTGI-VRG 143 (246)
Q Consensus 93 ~KLr~LtllsLa~-~~k~isy~~I~~~L~i~~~~evE~llI~~aI~~gL-I~G 143 (246)
..-|...|+.+-. .++.+|..+|++.++++ .+.|-.-|- ..-..|+ |.+
T Consensus 19 ~~~R~~~Il~~L~~~~~~~s~~eLa~~l~vS-~~Ti~rdi~-~L~~~G~~I~~ 69 (187)
T 1j5y_A 19 RQERLKSIVRILERSKEPVSGAQLAEELSVS-RQVIVQDIA-YLRSLGYNIVA 69 (187)
T ss_dssp HHHHHHHHHHHHHHCSSCBCHHHHHHHHTSC-HHHHHHHHH-HHHHHTCCCEE
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEEE
Confidence 4456667776655 45679999999999997 777765554 4445687 765
No 98
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=38.56 E-value=95 Score=22.70 Aligned_cols=44 Identities=16% Similarity=0.080 Sum_probs=32.4
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEE
Q 025901 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCF 152 (246)
Q Consensus 107 ~k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkIDQ~~~~v 152 (246)
+..++..+|++.++++ ...|=..|= .....|+|.-.-|..++..
T Consensus 48 ~~~~~~~~la~~l~i~-~~~vs~~l~-~Le~~glv~r~~~~~d~R~ 91 (147)
T 2hr3_A 48 GGDVTPSELAAAERMR-SSNLAALLR-ELERGGLIVRHADPQDGRR 91 (147)
T ss_dssp TSCBCHHHHHHHTTCC-HHHHHHHHH-HHHHTTSEEEEC------C
T ss_pred CCCCCHHHHHHHhCCC-hhhHHHHHH-HHHHCCCEeeCCCCCCCCc
Confidence 5679999999999997 888887765 8888999998877654443
No 99
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=38.32 E-value=1.1e+02 Score=22.21 Aligned_cols=43 Identities=16% Similarity=0.188 Sum_probs=29.3
Q ss_pred cChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEE
Q 025901 110 LPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEV 154 (246)
Q Consensus 110 isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkIDQ~~~~v~V 154 (246)
++..+|++.++++ ...|=..|= .....|+|.-.-|..++....
T Consensus 52 ~t~~eLa~~l~~s-~~tvs~~l~-~L~~~Glv~r~~~~~d~R~~~ 94 (146)
T 3tgn_A 52 LTNSELARRLNVS-QAAVTKAIK-SLVKEGMLETSKDSKDARVIF 94 (146)
T ss_dssp CCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEC----------C
T ss_pred CCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCeEeccCCCCCceeE
Confidence 9999999999997 888887776 889999999888766655443
No 100
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=37.77 E-value=28 Score=31.56 Aligned_cols=71 Identities=14% Similarity=0.126 Sum_probs=38.8
Q ss_pred cCChhhHhhhhCCCC-C-cchHHHHHHHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEE
Q 025901 71 HGTWSDYKNNAGHLP-Q-LVPDQVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG 143 (246)
Q Consensus 71 ~Gt~~dy~~~~~~l~-~-L~~~~~~KLr~LtllsLa~~~k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~G 143 (246)
-||+.-|-+++.... . -+...++..-...|+.+...+..+|..+|++.++++ ...|-..+= +.+..|+|..
T Consensus 13 ~~~~~~~~~~~~m~~~~~~~~~~~r~~n~~~il~~l~~~~~~sr~ela~~~gls-~~tv~~~v~-~L~~~gli~~ 85 (429)
T 1z05_A 13 LGTENLYFQSNAMYMAQPGHIDHIKQINAGRVYKLIDQKGPISRIDLSKESELA-PASITKITR-ELIDAHLIHE 85 (429)
T ss_dssp ---------------------CHHHHHHHHHHHHHHHHHCSBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEE
T ss_pred cCccceeeehhhhhcccCCCHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEe
Confidence 366666655543221 1 122223333334556655666789999999999997 888888775 8899999875
No 101
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=37.37 E-value=81 Score=23.39 Aligned_cols=43 Identities=16% Similarity=0.104 Sum_probs=31.7
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE
Q 025901 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (246)
Q Consensus 107 ~k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkIDQ~~~~ 151 (246)
+..++..+|++.++++ ...|=..|= .....|+|.-.-|..++.
T Consensus 59 ~~~~t~~ela~~l~~s-~~tvs~~l~-~Le~~glv~r~~~~~d~R 101 (153)
T 2pex_A 59 TDERSVSEIGERLYLD-SATLTPLLK-RLQAAGLVTRTRAASDER 101 (153)
T ss_dssp SCSEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEC------
T ss_pred CCCcCHHHHHHHhCCC-cccHHHHHH-HHHHCCCEeecCCcccCC
Confidence 3568999999999997 888887775 889999999877654443
No 102
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=37.25 E-value=33 Score=25.34 Aligned_cols=41 Identities=17% Similarity=0.211 Sum_probs=33.6
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCC
Q 025901 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRR 150 (246)
Q Consensus 108 k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkIDQ~~~ 150 (246)
..++..+|++.++++ ...|-..|= .....|+|.-.-|..++
T Consensus 53 ~~~~~~~la~~l~~~-~~tvs~~l~-~L~~~glv~r~~~~~d~ 93 (147)
T 1z91_A 53 ETLTVKKMGEQLYLD-SGTLTPMLK-RMEQQGLITRKRSEEDE 93 (147)
T ss_dssp SEEEHHHHHHTTTCC-HHHHHHHHH-HHHHHTSEECCBCSSCT
T ss_pred CCCCHHHHHHHHCCC-cCcHHHHHH-HHHHCCCEEeccCCCCC
Confidence 478999999999997 888888775 88889999987765433
No 103
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=36.60 E-value=56 Score=23.76 Aligned_cols=42 Identities=17% Similarity=0.060 Sum_probs=34.7
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE
Q 025901 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (246)
Q Consensus 108 k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkIDQ~~~~ 151 (246)
..++..+|++.++++ ...|-..|= .....|+|.-.-+..++.
T Consensus 44 ~~~~~~ela~~l~is-~~~vs~~l~-~L~~~gli~~~~~~~d~r 85 (142)
T 3bdd_A 44 APLHQLALQERLQID-RAAVTRHLK-LLEESGYIIRKRNPDNQR 85 (142)
T ss_dssp CSBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEECSSSTT
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEecCCCCCCC
Confidence 469999999999997 888888775 888999999888765443
No 104
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=35.09 E-value=1.1e+02 Score=21.12 Aligned_cols=41 Identities=15% Similarity=0.156 Sum_probs=32.9
Q ss_pred CcccChHHH----HHHcCCCChHHHHHHHHHHhHhcCccEEEecCCC
Q 025901 107 NKVLPYDEL----MEELDVTNVRELEDFLINECMYTGIVRGKLDQLR 149 (246)
Q Consensus 107 ~k~isy~~I----~~~L~i~~~~evE~llI~~aI~~gLI~GkIDQ~~ 149 (246)
+..++..+| ++.++++ ...|=..|= .....|+|.-.-|...
T Consensus 20 ~~~~~~~el~~~la~~l~is-~~tvs~~l~-~Le~~gli~r~~~~r~ 64 (99)
T 1tbx_A 20 NEGIATYDLYKKVNAEFPMS-TATFYDAKK-FLIQEGFVKERQERGE 64 (99)
T ss_dssp CTTCBHHHHHHHHHTTSCCC-HHHHHHHHH-HHHHTTSEEEEEETTE
T ss_pred cCCcCHHHHHHHHHHHcCCC-HHHHHHHHH-HHHHCCCEEEEecCCc
Confidence 466899999 8999997 778877665 7777899998888733
No 105
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=34.66 E-value=28 Score=26.58 Aligned_cols=43 Identities=7% Similarity=-0.039 Sum_probs=32.9
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEE
Q 025901 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCF 152 (246)
Q Consensus 108 k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkIDQ~~~~v 152 (246)
..++..+|++.++++ ...|=..|= .....|+|.-.-|..+++.
T Consensus 66 ~~~t~~eLa~~l~~~-~~~vs~~l~-~Le~~Glv~r~~~~~DrR~ 108 (161)
T 3e6m_A 66 GELTVGQLATLGVME-QSTTSRTVD-QLVDEGLAARSISDADQRK 108 (161)
T ss_dssp SEEEHHHHHHHTTCC-HHHHHHHHH-HHHHTTSEEECC---CCCS
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEeeCCcccCCe
Confidence 479999999999997 777877765 8888999998877655543
No 106
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=33.91 E-value=1e+02 Score=23.83 Aligned_cols=41 Identities=12% Similarity=0.100 Sum_probs=31.8
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCC
Q 025901 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLR 149 (246)
Q Consensus 107 ~k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkIDQ~~ 149 (246)
.+..+..+|++.|+++ ...|=.-+= ....+|+|..+-+...
T Consensus 69 ~~~~t~~eLa~~lgls-~stvs~hL~-~L~~aGlV~~~~~Gr~ 109 (151)
T 3f6v_A 69 SGEQTVNNLAAHFPAS-RSAISQHLR-VLTEAGLVTPRKDGRF 109 (151)
T ss_dssp GCCEEHHHHHTTSSSC-HHHHHHHHH-HHHHTTSEEEEEETTE
T ss_pred hCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEEecCCE
Confidence 3568999999999997 777766665 6778999998754433
No 107
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=33.09 E-value=47 Score=21.70 Aligned_cols=28 Identities=18% Similarity=0.311 Sum_probs=23.7
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhH
Q 025901 107 NKVLPYDELMEELDVTNVRELEDFLINECM 136 (246)
Q Consensus 107 ~k~isy~~I~~~L~i~~~~evE~llI~~aI 136 (246)
....||.+|++.++++ ...|...+- .|+
T Consensus 23 ~~g~s~~eIA~~lgis-~~tV~~~~~-ra~ 50 (68)
T 2p7v_B 23 NTDYTLEEVGKQFDVT-RERIRQIEA-KAL 50 (68)
T ss_dssp SSCCCHHHHHHHHTCC-HHHHHHHHH-HHH
T ss_pred CCCCCHHHHHHHHCcC-HHHHHHHHH-HHH
Confidence 3568999999999997 999988876 665
No 108
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=32.99 E-value=65 Score=24.78 Aligned_cols=37 Identities=14% Similarity=0.267 Sum_probs=26.8
Q ss_pred HHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcC
Q 025901 98 LTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTG 139 (246)
Q Consensus 98 LtllsLa~~~k~isy~~I~~~L~i~~~~evE~llI~~aI~~g 139 (246)
+-|+.+...+ .||.+|++.++++ ..-|.. +- +++..|
T Consensus 66 ~eV~klL~~G--~syreIA~~~g~S-~aTIsR-v~-r~L~~g 102 (119)
T 3kor_A 66 LQVAKMIKQG--YTYATIEQESGAS-TATISR-VK-RSLQWG 102 (119)
T ss_dssp HHHHHHHHHT--CCHHHHHHHHCCC-HHHHHH-HH-HHHHSS
T ss_pred HHHHHHHHcC--CCHHHHHHHHCCC-HHHHHH-HH-HHHhcC
Confidence 5555554444 9999999999997 888886 44 666544
No 109
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=32.91 E-value=1.4e+02 Score=21.53 Aligned_cols=41 Identities=10% Similarity=0.049 Sum_probs=34.2
Q ss_pred ccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE
Q 025901 109 VLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (246)
Q Consensus 109 ~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkIDQ~~~~ 151 (246)
.++..+|++.++++ ...|=..|= .....|+|.-.-|..++.
T Consensus 50 ~~~~~ela~~l~~~-~~tvs~~l~-~Le~~Gli~r~~~~~d~R 90 (141)
T 3bro_A 50 EVLQRDLESEFSIK-SSTATVLLQ-RMEIKKLLYRKVSGKDSR 90 (141)
T ss_dssp CCBHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEECSSCTT
T ss_pred CcCHHHHHHHHCCC-cchHHHHHH-HHHHCCCEEeeCCCcCCC
Confidence 79999999999997 888887765 888899999887765544
No 110
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=31.99 E-value=1.1e+02 Score=23.42 Aligned_cols=44 Identities=9% Similarity=-0.053 Sum_probs=35.6
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEE
Q 025901 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFE 153 (246)
Q Consensus 108 k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkIDQ~~~~v~ 153 (246)
..++..+|++.++++ ...|=..|= .....|+|.-.-|..++...
T Consensus 58 ~~~t~~eLa~~l~is-~~tvs~~l~-~Le~~GlV~r~~~~~DrR~~ 101 (168)
T 2nyx_A 58 GPINLATLATLLGVQ-PSATGRMVD-RLVGAELIDRLPHPTSRREL 101 (168)
T ss_dssp CSEEHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEEECSSCSSCE
T ss_pred CCCCHHHHHHHhCCC-HHHHHHHHH-HHHHCCCEEeccCCCCCCee
Confidence 469999999999997 777877665 88889999988887655443
No 111
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=31.62 E-value=64 Score=23.97 Aligned_cols=49 Identities=14% Similarity=0.150 Sum_probs=31.4
Q ss_pred ccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEE
Q 025901 104 AETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEV 154 (246)
Q Consensus 104 a~~~k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkIDQ~~~~v~V 154 (246)
...+..++..+|++.++++ ...+=..|= .....|+|.-.-|..+++...
T Consensus 49 ~~~~~~~t~~eLa~~l~i~-~~tvs~~l~-~Le~~Glv~r~~~~~D~R~~~ 97 (150)
T 3fm5_A 49 CEQAEGVNQRGVAATMGLD-PSQIVGLVD-ELEERGLVVRTLDPSDRRNKL 97 (150)
T ss_dssp HHSTTCCCSHHHHHHHTCC-HHHHHHHHH-HHHTTTSEEC-----------
T ss_pred HhCCCCcCHHHHHHHHCCC-HhHHHHHHH-HHHHCCCEEeeCCccccchhe
Confidence 3444569999999999997 778877765 888999999887776655443
No 112
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=31.48 E-value=50 Score=21.89 Aligned_cols=28 Identities=11% Similarity=0.146 Sum_probs=23.1
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhH
Q 025901 107 NKVLPYDELMEELDVTNVRELEDFLINECM 136 (246)
Q Consensus 107 ~k~isy~~I~~~L~i~~~~evE~llI~~aI 136 (246)
+...||.+|++.++++ ...|...+- .|+
T Consensus 28 ~~~~s~~eIA~~l~is-~~tV~~~~~-ra~ 55 (73)
T 1ku3_A 28 GREHTLEEVGAYFGVT-RERIRQIEN-KAL 55 (73)
T ss_dssp SSCCCHHHHHHHHTCC-HHHHHHHHH-HHH
T ss_pred CCCCCHHHHHHHHCCC-HHHHHHHHH-HHH
Confidence 3568999999999997 888888765 554
No 113
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=31.37 E-value=38 Score=19.74 Aligned_cols=22 Identities=9% Similarity=0.227 Sum_probs=19.0
Q ss_pred cChHHHHHHcCCCChHHHHHHHH
Q 025901 110 LPYDELMEELDVTNVRELEDFLI 132 (246)
Q Consensus 110 isy~~I~~~L~i~~~~evE~llI 132 (246)
.++.+|++.++|+ ...|-.|+=
T Consensus 22 ~s~~~IA~~lgis-~~Tv~~~~~ 43 (51)
T 1tc3_C 22 VSLHEMSRKISRS-RHCIRVYLK 43 (51)
T ss_dssp CCHHHHHHHHTCC-HHHHHHHHH
T ss_pred CCHHHHHHHHCcC-HHHHHHHHh
Confidence 6899999999997 888887764
No 114
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=30.12 E-value=74 Score=22.16 Aligned_cols=35 Identities=17% Similarity=0.120 Sum_probs=29.0
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE
Q 025901 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (246)
Q Consensus 108 k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~Gk 144 (246)
..++..+|++.++++ ...|-..+= .....|+|.-.
T Consensus 42 ~~~~~~eLa~~l~is-~~tv~~~L~-~L~~~Glv~~~ 76 (96)
T 1y0u_A 42 KGRSEEEIMQTLSLS-KKQLDYHLK-VLEAGFCIERV 76 (96)
T ss_dssp TTCCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEE
Confidence 558999999999997 777877765 77888999854
No 115
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=29.72 E-value=40 Score=24.18 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=31.0
Q ss_pred cCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE
Q 025901 105 ETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (246)
Q Consensus 105 ~~~k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~Gk 144 (246)
.++..++-.+|++.++++ ...|=..+- .....|+|...
T Consensus 29 ~~g~~~s~~eLa~~lgvs-~~tV~~~L~-~L~~~GlV~~~ 66 (110)
T 1q1h_A 29 DKGTEMTDEEIANQLNIK-VNDVRKKLN-LLEEQGFVSYR 66 (110)
T ss_dssp HHCSCBCHHHHHHTTTSC-HHHHHHHHH-HHHHHTSCEEE
T ss_pred HcCCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEE
Confidence 345458999999999997 888877776 78889999865
No 116
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=29.71 E-value=1.1e+02 Score=21.49 Aligned_cols=27 Identities=4% Similarity=0.266 Sum_probs=21.9
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhH
Q 025901 108 KVLPYDELMEELDVTNVRELEDFLINECM 136 (246)
Q Consensus 108 k~isy~~I~~~L~i~~~~evE~llI~~aI 136 (246)
.-.+|.+|++.|+++ ...|...+- .+.
T Consensus 41 ~g~s~~eIA~~l~is-~~tV~~~l~-r~~ 67 (95)
T 3c57_A 41 EGLTNKQIADRMFLA-EKTVKNYVS-RLL 67 (95)
T ss_dssp TTCCHHHHHHHHTCC-HHHHHHHHH-HHH
T ss_pred cCCCHHHHHHHHCcC-HHHHHHHHH-HHH
Confidence 347999999999997 999988765 543
No 117
>2k6x_A Sigma-A, RNA polymerase sigma factor RPOD; DNA-binding, transcription, transcription regulation; NMR {Thermotoga maritima}
Probab=29.63 E-value=35 Score=23.40 Aligned_cols=39 Identities=13% Similarity=0.270 Sum_probs=27.0
Q ss_pred hhhcccCCcccChHHHHHHcCC----CChHHHHHHHHHHhHhcC
Q 025901 100 VLTLAETNKVLPYDELMEELDV----TNVRELEDFLINECMYTG 139 (246)
Q Consensus 100 llsLa~~~k~isy~~I~~~L~i----~~~~evE~llI~~aI~~g 139 (246)
|+..+...+.|+|++|.+.|.- -+.+++|+++- ..-..|
T Consensus 14 Li~~gK~~G~lTy~EI~d~l~~~~~~ld~e~id~i~~-~L~~~g 56 (72)
T 2k6x_A 14 LISLGKKKGYITYEDIDKAFPPDFEGFDTNLIERIHE-ELEKHG 56 (72)
T ss_dssp HHHHHHHHSSCBHHHHHHHCSCSCSSCCHHHHHHHHH-HHHHTC
T ss_pred HHHHHhHcCCccHHHHHHhCccccccCCHHHHHHHHH-HHHHCC
Confidence 5556666678999999999852 24788888754 333344
No 118
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=28.87 E-value=42 Score=24.78 Aligned_cols=60 Identities=18% Similarity=0.130 Sum_probs=33.7
Q ss_pred CcchHHHHHHHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEE
Q 025901 86 QLVPDQVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFE 153 (246)
Q Consensus 86 ~L~~~~~~KLr~LtllsLa~~~k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkIDQ~~~~v~ 153 (246)
.|++.+..-|..| .. +..++..+|++.++++ ...|=..|= .....|+|.-.-|..++...
T Consensus 34 ~lt~~~~~vL~~l-----~~-~~~~t~~eLa~~l~~~-~~tvs~~l~-~L~~~Glv~r~~~~~DrR~~ 93 (142)
T 3ech_A 34 DLTPPDVHVLKLI-----DE-QRGLNLQDLGRQMCRD-KALITRKIR-ELEGRNLVRRERNPSDQRSF 93 (142)
T ss_dssp CCCHHHHHHHHHH-----HH-TTTCCHHHHHHHHC----CHHHHHHH-HHHHTTSEEC----------
T ss_pred CCCHHHHHHHHHH-----Hh-CCCcCHHHHHHHhCCC-HHHHHHHHH-HHHHCCCEeeccCCCCCCee
Confidence 4666664333222 22 3469999999999997 777777765 88889999988887665543
No 119
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=28.28 E-value=60 Score=22.44 Aligned_cols=29 Identities=14% Similarity=0.257 Sum_probs=24.3
Q ss_pred CCcccChHHHHHHcCCCChHHHHHHHHHHhH
Q 025901 106 TNKVLPYDELMEELDVTNVRELEDFLINECM 136 (246)
Q Consensus 106 ~~k~isy~~I~~~L~i~~~~evE~llI~~aI 136 (246)
.+...||.+|++.++++ ...|...+- .|+
T Consensus 35 ~~~~~s~~EIA~~lgis-~~tV~~~~~-ra~ 63 (87)
T 1tty_A 35 DGKPKTLEEVGQYFNVT-RERIRQIEV-KAL 63 (87)
T ss_dssp TSSCCCHHHHHHHHTCC-HHHHHHHHH-HHH
T ss_pred CCCCCCHHHHHHHHCCC-HHHHHHHHH-HHH
Confidence 34679999999999997 989988876 765
No 120
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=28.12 E-value=1.6e+02 Score=20.89 Aligned_cols=60 Identities=8% Similarity=0.062 Sum_probs=42.6
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------HHHHHHHHHHHHHHHHHHHHhcc
Q 025901 162 LRPGQLGSMIQTLSNWLTTSDNLLISIQEKIKWADSM-------NEMDKKHRKDLEEKVEEAKKSLS 221 (246)
Q Consensus 162 l~~~q~~~l~~~L~~W~~~~~~vl~~Ie~~i~~~~~~-------~~~~~~~~~~~~~~~~~~k~~~~ 221 (246)
++++++......+......++..|..|+..+...... +..-...+.++.....++...|.
T Consensus 11 v~~~~l~~~a~~~~~~~~~i~~~l~~L~~~v~~L~~~g~W~G~A~~ay~~~~~~W~~~a~~l~~~L~ 77 (103)
T 4i0x_B 11 FDLDHIEQVTSRARGFKEFVTENLDQLESRAQKLVQSGQWAGAAAAAYSQAHKEWMDAARELVEGLS 77 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeechHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888899999999999998888888766554 34445555666666666665553
No 121
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=27.92 E-value=1.3e+02 Score=21.99 Aligned_cols=44 Identities=18% Similarity=0.052 Sum_probs=35.6
Q ss_pred ChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEe
Q 025901 111 PYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQF 156 (246)
Q Consensus 111 sy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkIDQ~~~~v~V~~ 156 (246)
+..+|++.++++ ...+=..|= .....|+|.-.-|..++....-.
T Consensus 52 ~~~~la~~l~~~-~~tvs~~l~-~Le~~Glv~r~~~~~D~R~~~~~ 95 (144)
T 3f3x_A 52 SMVYLANRYFVT-QSAITAAVD-KLEAKGLVRRIRDSKDRRIVIVE 95 (144)
T ss_dssp EHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEEETTEEEEEEEE
T ss_pred CHHHHHHHHCCC-hhHHHHHHH-HHHHCCCEEeccCCCCCceEEEE
Confidence 999999999997 777777665 88889999999888766554443
No 122
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=27.91 E-value=50 Score=23.02 Aligned_cols=27 Identities=7% Similarity=0.121 Sum_probs=22.4
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhH
Q 025901 108 KVLPYDELMEELDVTNVRELEDFLINECM 136 (246)
Q Consensus 108 k~isy~~I~~~L~i~~~~evE~llI~~aI 136 (246)
.-.||.+|++.|+++ ...|...+- .|+
T Consensus 52 ~g~s~~eIA~~lgis-~~tV~~~l~-ra~ 78 (92)
T 3hug_A 52 RGWSTAQIATDLGIA-EGTVKSRLH-YAV 78 (92)
T ss_dssp SCCCHHHHHHHHTSC-HHHHHHHHH-HHH
T ss_pred cCCCHHHHHHHHCcC-HHHHHHHHH-HHH
Confidence 447999999999997 888888776 654
No 123
>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=27.34 E-value=52 Score=29.21 Aligned_cols=61 Identities=18% Similarity=0.275 Sum_probs=42.2
Q ss_pred CChhhHhhhhCC--CCCcc----hHHHHHHHHHHhhhccc----CCcccChHHHHHHcCCCChHHHHHHHH
Q 025901 72 GTWSDYKNNAGH--LPQLV----PDQVLKLKQLTVLTLAE----TNKVLPYDELMEELDVTNVRELEDFLI 132 (246)
Q Consensus 72 Gt~~dy~~~~~~--l~~L~----~~~~~KLr~LtllsLa~----~~k~isy~~I~~~L~i~~~~evE~llI 132 (246)
|+|..|-..-.. .|-|. +-....+|..+|-+++. +.+.+|.+.|++.|+.++.+++++|+-
T Consensus 177 gNY~rFFrL~~~~~~pyL~aclle~~~~~vR~~AL~~i~kay~~k~~~~pl~~L~~~L~Fds~ee~~~F~~ 247 (316)
T 3t5v_A 177 NFYARFFQLMQSPSLPLLMGFFLQMHLTDIRFYALRALSHTLNKKHKPIPFIYLENMLLFNNRQEIIEFCN 247 (316)
T ss_dssp CCHHHHHHHHTCTTSCHHHHHHHGGGHHHHHHHHHHHHHHHSCTTCCCEEHHHHHHHTTCSSHHHHHHHHH
T ss_pred chHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCHHHHHHHhCCCCHHHHHHHHH
Confidence 666665553322 33332 22357888877776665 336899999999999998999998875
No 124
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=27.23 E-value=1e+02 Score=22.42 Aligned_cols=38 Identities=18% Similarity=0.141 Sum_probs=30.7
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecC
Q 025901 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQ 147 (246)
Q Consensus 108 k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkIDQ 147 (246)
+..++.+|++.++++ ...|-..+= .....|+|..+=+.
T Consensus 33 ~~~~~~eLa~~lgis-~stvs~~L~-~L~~~GlV~~~~~g 70 (118)
T 2jsc_A 33 GVCYPGQLAAHLGLT-RSNVSNHLS-CLRGCGLVVATYEG 70 (118)
T ss_dssp TCCSTTTHHHHHSSC-HHHHHHHHH-HHTTTTSEEEEECS
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCceEEEEEC
Confidence 357899999999997 888887766 77889999876543
No 125
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=26.80 E-value=66 Score=27.17 Aligned_cols=45 Identities=18% Similarity=0.122 Sum_probs=36.8
Q ss_pred CCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEE
Q 025901 106 TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQ 155 (246)
Q Consensus 106 ~~k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkIDQ~~~~v~V~ 155 (246)
.+...+..+|++.++++ ..+|+.-+- +....|+|+ -..+++|.++
T Consensus 175 ~~~~~t~~~la~~~~l~-~~~V~~~l~-~L~~~~~v~---~~~~~~~~~~ 219 (232)
T 2qlz_A 175 LNGRATVEELSDRLNLK-EREVREKIS-EMARFVPVK---IINDNTVVLD 219 (232)
T ss_dssp HSSEEEHHHHHHHHTCC-HHHHHHHHH-HHTTTSCEE---EETTTEEEEC
T ss_pred hcCCCCHHHHHHHhCcC-HHHHHHHHH-HHHhcCCeE---EecCCeEEec
Confidence 36889999999999998 999998887 999999998 3345566654
No 126
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=26.45 E-value=90 Score=22.73 Aligned_cols=43 Identities=7% Similarity=0.178 Sum_probs=34.2
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE
Q 025901 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (246)
Q Consensus 107 ~k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkIDQ~~~~ 151 (246)
+..++..+|++.++++ ...|=..|= .....|+|.-.-|..++.
T Consensus 49 ~~~~~~~ela~~l~~~-~~tvs~~l~-~L~~~gli~r~~~~~d~R 91 (142)
T 2bv6_A 49 ESPVNVKKVVTELALD-TGTVSPLLK-RMEQVDLIKRERSEVDQR 91 (142)
T ss_dssp SSEEEHHHHHHHTTCC-TTTHHHHHH-HHHHTTSEEEEECSSSTT
T ss_pred cCCcCHHHHHHHHCCC-hhhHHHHHH-HHHHCCCEEeecCCCCcc
Confidence 3469999999999997 777777665 888899999887765444
No 127
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=26.25 E-value=2.1e+02 Score=21.52 Aligned_cols=49 Identities=8% Similarity=-0.015 Sum_probs=36.5
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEee
Q 025901 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFA 157 (246)
Q Consensus 107 ~k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkIDQ~~~~v~V~~~ 157 (246)
+..++..+|++.++++ ...|=.+|= .....|+|.-.-|..++....-+.
T Consensus 60 ~~~~t~~eLa~~l~~~-~~tvs~~l~-~Le~~Glv~r~~~~~DrR~~~l~L 108 (168)
T 3u2r_A 60 PEGMATLQIADRLISR-APDITRLID-RLDDRGLVLRTRKPENRRVVEVAL 108 (168)
T ss_dssp TSCEEHHHHHHHC----CTHHHHHHH-HHHHTTSEEEEEETTEEEEEEEEE
T ss_pred CCCcCHHHHHHHHCCC-hhhHHHHHH-HHHHCCCEeecCCCCCCCeeEeEE
Confidence 4689999999999997 677777665 888899999998887776554443
No 128
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=26.08 E-value=61 Score=23.61 Aligned_cols=28 Identities=18% Similarity=0.311 Sum_probs=24.0
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhH
Q 025901 107 NKVLPYDELMEELDVTNVRELEDFLINECM 136 (246)
Q Consensus 107 ~k~isy~~I~~~L~i~~~~evE~llI~~aI 136 (246)
....||.+|++.++++ ..-|...+- .|+
T Consensus 37 ~e~~s~~EIA~~lgiS-~~tVr~~~~-rAl 64 (99)
T 3t72_q 37 NTDYTLEEVGKQFDVT-RERIRQIEA-KAL 64 (99)
T ss_pred CCCCCHHHHHHHHCcC-HHHHHHHHH-HHH
Confidence 4679999999999997 888888877 775
No 129
>2l16_A SEC-independent protein translocase protein tatad; membrane protein, protein transport; NMR {Bacillus subtilis}
Probab=25.42 E-value=50 Score=23.40 Aligned_cols=32 Identities=13% Similarity=0.011 Sum_probs=26.5
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025901 161 DLRPGQLGSMIQTLSNWLTTSDNLLISIQEKI 192 (246)
Q Consensus 161 dl~~~q~~~l~~~L~~W~~~~~~vl~~Ie~~i 192 (246)
.|+|+.++.+...+..|.....+..+..++..
T Consensus 20 vfGpkkLP~l~r~lGk~ir~fK~~~~~~~~e~ 51 (78)
T 2l16_A 20 IFGPSKLPEIGRAAGRTLLEFKSATKSLVSGD 51 (78)
T ss_dssp HSCTTTHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred eeCccHhHHHHHHHHHHHHHHHHHHHHhHhhh
Confidence 47899999999999999998887777666543
No 130
>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1
Probab=25.24 E-value=30 Score=24.86 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHhHhcCccEEEecC
Q 025901 124 VRELEDFLINECMYTGIVRGKLDQ 147 (246)
Q Consensus 124 ~~evE~llI~~aI~~gLI~GkIDQ 147 (246)
.+.||+.+| .....|-|.|+||.
T Consensus 36 A~~VE~~Li-~lAq~Gqi~~ki~e 58 (80)
T 1eij_A 36 VEQIELQLI-QLAQMGRVRSKITD 58 (80)
T ss_dssp HHHHHHHHH-HHHHCCSSCCCCCH
T ss_pred HHHHHHHHH-HHHHcCCCCCCcCH
Confidence 378999999 88899999998874
No 131
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=25.10 E-value=1.4e+02 Score=20.58 Aligned_cols=47 Identities=4% Similarity=-0.004 Sum_probs=33.0
Q ss_pred CCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEE
Q 025901 106 TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEV 154 (246)
Q Consensus 106 ~~k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkIDQ~~~~v~V 154 (246)
++..++..+|++.++++ ...|=.+|= .....|+|.-.=|.....+.+
T Consensus 27 ~~~~~t~~eLa~~l~i~-~~tvs~~l~-~Le~~Glv~~~~d~R~~~v~L 73 (95)
T 2qvo_A 27 GGNDVYIQYIASKVNSP-HSYVWLIIK-KFEEAKMVECELEGRTKIIRL 73 (95)
T ss_dssp TTCCEEHHHHHHHSSSC-HHHHHHHHH-HHHHTTSEEEEEETTEEEEEE
T ss_pred CCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCcCccCCCCCCeEEEEE
Confidence 34459999999999997 777777765 788899994333433333433
No 132
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=25.05 E-value=83 Score=23.06 Aligned_cols=65 Identities=6% Similarity=0.030 Sum_probs=43.7
Q ss_pred CcchHHHHHHHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEe
Q 025901 86 QLVPDQVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQF 156 (246)
Q Consensus 86 ~L~~~~~~KLr~LtllsLa~~~k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkIDQ~~~~v~V~~ 156 (246)
.|++.+..-|.. +.- .....++..+|++.++++ ...|=..|= .....|+|.=+-|..++....-+
T Consensus 34 ~lt~~q~~vL~~---l~~-~~~~~~t~~eLa~~l~~~-~~tvs~~l~-~Le~~Glv~r~~~~~D~R~~~i~ 98 (127)
T 2frh_A 34 SISFEEFAVLTY---ISE-NKEKEYYLKDIINHLNYK-QPQVVKAVK-ILSQEDYFDKKRNEHDERTVLIL 98 (127)
T ss_dssp CCCHHHHHHHHH---HHH-TCCSEEEHHHHHHHSSSH-HHHHHHHHH-HHHHTTSSCCBCCSSSSCCCEEE
T ss_pred CCCHHHHHHHHH---HHh-ccCCCcCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEecCCCCCCCeeEEE
Confidence 466666433322 211 223679999999999997 777777665 88889999987777665544333
No 133
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=24.29 E-value=2.2e+02 Score=21.04 Aligned_cols=27 Identities=19% Similarity=0.149 Sum_probs=15.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhc
Q 025901 194 WADSMNEMDKKHRKDLEEKVEEAKKSL 220 (246)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~k~~~ 220 (246)
.||.|....++.+..++.++..++..|
T Consensus 66 EAN~MVa~ar~e~~~~e~kn~~L~~qL 92 (97)
T 2eqb_B 66 EANNMVADARKEKYAIEILNKRLTEQL 92 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555566666666655555
No 134
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=24.02 E-value=70 Score=23.75 Aligned_cols=42 Identities=14% Similarity=0.016 Sum_probs=33.1
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEE--EecCCCCE
Q 025901 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG--KLDQLRRC 151 (246)
Q Consensus 108 k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~G--kIDQ~~~~ 151 (246)
..++..+|++.++++ ...|=..|= .....|+|.- .-|..++.
T Consensus 54 ~~~t~~eLa~~l~~~-~~tvs~~l~-~Le~~Glv~r~~~~~~~d~R 97 (154)
T 2qww_A 54 PGISVADLTKRLIIT-GSSAAANVD-GLISLGLVVKLNKTIPNDSM 97 (154)
T ss_dssp TTEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEESCC--CTTCT
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEecCcCCCCCCc
Confidence 569999999999997 888888775 8899999998 66655544
No 135
>2fh0_A Hypothetical 16.0 kDa protein in ABF2-CHL12 intergenic region; ensemble, YMR074CP, unknown function; NMR {Saccharomyces cerevisiae}
Probab=23.40 E-value=31 Score=24.81 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHhHhcCccEEEecC
Q 025901 124 VRELEDFLINECMYTGIVRGKLDQ 147 (246)
Q Consensus 124 ~~evE~llI~~aI~~gLI~GkIDQ 147 (246)
.+.||+.+| .....|-|.|+|+.
T Consensus 34 A~~VE~~Li-~lAq~Gqi~~ki~e 56 (81)
T 2fh0_A 34 AQAVETYLK-KLIATNNVTHKITE 56 (81)
T ss_dssp HHHHHHHHH-HHHHHTCCSCCBCH
T ss_pred HHHHHHHHH-HHHHcCCCCCCcCH
Confidence 478999999 88889999988875
No 136
>1mgt_A MGMT, protein (O6-methylguanine-DNA methyltransferase); DNA repair protein, suicidal enzyme, hyperthermostability; 1.80A {Thermococcus kodakarensis} SCOP: a.4.2.1 c.55.7.1
Probab=23.36 E-value=2.1e+02 Score=23.19 Aligned_cols=63 Identities=17% Similarity=0.218 Sum_probs=36.2
Q ss_pred HHHHHHHHhcCChhhHhhhhC-CCCCcchHHHHHHHHHHhhh-cccCCcccChHHHHHHcCCCChHHHH
Q 025901 62 YLDMLRLFAHGTWSDYKNNAG-HLPQLVPDQVLKLKQLTVLT-LAETNKVLPYDELMEELDVTNVRELE 128 (246)
Q Consensus 62 ~~~LL~iFa~Gt~~dy~~~~~-~l~~L~~~~~~KLr~Ltlls-La~~~k~isy~~I~~~L~i~~~~evE 128 (246)
+.+.+.-+.+|...++..... .+..+++-+ .+....+. -...+++.||.+|++.++.+ .+.|=
T Consensus 63 ~~~~i~~~~~g~~~~~~~~~~l~~~g~t~Fq---~~V~~~l~~~IP~G~~~TYg~iA~~~G~p-~RaVG 127 (174)
T 1mgt_A 63 YPEKVFKVLIGELDNASFLRELSFEGVTPFE---KKVYEWLTKNVKRGSVITYGDLAKALNTS-PRAVG 127 (174)
T ss_dssp HHHHHHHHHTTSSCGGGGGGGBCCTTCCHHH---HHHHHHHHHHSCTTCCEEHHHHHHHTTSC-HHHHH
T ss_pred HHHHHHHHHcccccCcccCCcccccCCChHH---HHHHHHHHccCCCCceEeHHHHHHHhCCC-HHHHH
Confidence 334333333488777654211 122224433 23344444 45678999999999999987 55543
No 137
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=23.30 E-value=1.6e+02 Score=23.02 Aligned_cols=65 Identities=6% Similarity=0.064 Sum_probs=46.6
Q ss_pred CcchHHHHHHHHHHhhhccc-CCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEee
Q 025901 86 QLVPDQVLKLKQLTVLTLAE-TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFA 157 (246)
Q Consensus 86 ~L~~~~~~KLr~LtllsLa~-~~k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkIDQ~~~~v~V~~~ 157 (246)
.|++.+..-|. .|.. ++..++..+|++.++++ ...+=..|= .....|+|.-.-|..++....-+.
T Consensus 38 ~lt~~q~~vL~-----~L~~~~~~~~t~~eLa~~l~is-~~tvs~~l~-~Le~~GlV~r~~~~~DrR~~~l~L 103 (189)
T 3nqo_A 38 ILTSRQYMTIL-----SILHLPEEETTLNNIARKMGTS-KQNINRLVA-NLEKNGYVDVIPSPHDKRAINVKV 103 (189)
T ss_dssp SSCHHHHHHHH-----HHHHSCGGGCCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEEECSSCSSCEEEEE
T ss_pred cCCHHHHHHHH-----HHHhccCCCcCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEeccCCCCCCeeEEEE
Confidence 47776643332 2232 35689999999999997 778877765 889999999999887766444433
No 138
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=23.21 E-value=94 Score=21.88 Aligned_cols=40 Identities=28% Similarity=0.393 Sum_probs=26.3
Q ss_pred CCCcchHHHHHHHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHH
Q 025901 84 LPQLVPDQVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLI 132 (246)
Q Consensus 84 l~~L~~~~~~KLr~LtllsLa~~~k~isy~~I~~~L~i~~~~evE~llI 132 (246)
.+.|++.+..=+++ .. .-.++.+|++.|+|+ ...|+..+-
T Consensus 27 ~~~Lt~rE~~Vl~l------~~--~G~s~~eIA~~L~iS-~~TV~~~~~ 66 (90)
T 3ulq_B 27 QDVLTPRECLILQE------VE--KGFTNQEIADALHLS-KRSIEYSLT 66 (90)
T ss_dssp --CCCHHHHHHHHH------HH--TTCCHHHHHHHHTCC-HHHHHHHHH
T ss_pred ccCCCHHHHHHHHH------HH--cCCCHHHHHHHHCcC-HHHHHHHHH
Confidence 45577765333322 22 336999999999997 888887765
No 139
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=23.09 E-value=1.9e+02 Score=21.30 Aligned_cols=37 Identities=14% Similarity=0.090 Sum_probs=30.2
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEec
Q 025901 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLD 146 (246)
Q Consensus 108 k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkID 146 (246)
+..++.+|++.++++ ...|=..+= .....|+|..+=+
T Consensus 58 ~~~s~~ela~~lgis-~stvs~~L~-~Le~~Glv~~~~~ 94 (122)
T 1r1t_A 58 SELCVGDLAQAIGVS-ESAVSHQLR-SLRNLRLVSYRKQ 94 (122)
T ss_dssp CCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEEEEe
Confidence 568999999999997 777877665 6777899987654
No 140
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=22.99 E-value=1.1e+02 Score=20.82 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=21.0
Q ss_pred ccChHHHHHHcCCCChHHHHHHHHHHhH
Q 025901 109 VLPYDELMEELDVTNVRELEDFLINECM 136 (246)
Q Consensus 109 ~isy~~I~~~L~i~~~~evE~llI~~aI 136 (246)
-.+|.+|++.|+++ ...|...+- .+.
T Consensus 36 g~s~~eIA~~l~is-~~tV~~~l~-r~~ 61 (82)
T 1je8_A 36 GLPNKMIARRLDIT-ESTVKVHVK-HML 61 (82)
T ss_dssp TCCHHHHHHHHTSC-HHHHHHHHH-HHH
T ss_pred CCCHHHHHHHHCcC-HHHHHHHHH-HHH
Confidence 37999999999997 888887765 443
No 141
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=22.94 E-value=1.1e+02 Score=25.76 Aligned_cols=45 Identities=27% Similarity=0.223 Sum_probs=35.0
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEE
Q 025901 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQ 155 (246)
Q Consensus 107 ~k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~GkIDQ~~~~v~V~ 155 (246)
+..++..+|++.++++ ...+-..+= .....|+|... ...+.+.++
T Consensus 164 ~~~~s~~eLA~~lgls-ksTv~r~L~-~Le~~GlV~r~--~r~~~~~LT 208 (244)
T 2wte_A 164 TKGTGITELAKMLDKS-EKTLINKIA-ELKKFGILTQK--GKDRKVELN 208 (244)
T ss_dssp HTCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEE--TTTTEEEEC
T ss_pred cCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEe--CCccEEEEC
Confidence 3469999999999998 888888876 88889999876 334445444
No 142
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=22.89 E-value=1.5e+02 Score=18.72 Aligned_cols=26 Identities=12% Similarity=0.120 Sum_probs=21.4
Q ss_pred ccChHHHHHHcCCCChHHHHHHHHHHhH
Q 025901 109 VLPYDELMEELDVTNVRELEDFLINECM 136 (246)
Q Consensus 109 ~isy~~I~~~L~i~~~~evE~llI~~aI 136 (246)
-.||.+|++.++++ ...|...+- .|.
T Consensus 31 g~s~~eIA~~lgis-~~tv~~~~~-ra~ 56 (70)
T 2o8x_A 31 GLSYADAAAVCGCP-VGTIRSRVA-RAR 56 (70)
T ss_dssp CCCHHHHHHHHTSC-HHHHHHHHH-HHH
T ss_pred CCCHHHHHHHHCcC-HHHHHHHHH-HHH
Confidence 47999999999997 888887765 554
No 143
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=22.03 E-value=68 Score=23.77 Aligned_cols=41 Identities=12% Similarity=0.074 Sum_probs=31.6
Q ss_pred hcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE
Q 025901 102 TLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (246)
Q Consensus 102 sLa~~~k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~Gk 144 (246)
.+...+..++..+|++.++++ ...|=..|= .....|+|.-.
T Consensus 15 ~l~~~~~~~~~~ela~~l~vs-~~tvs~~l~-~Le~~Glv~r~ 55 (142)
T 1on2_A 15 MLIEEKGYARVSDIAEALAVH-PSSVTKMVQ-KLDKDEYLIYE 55 (142)
T ss_dssp HHHHHHSSCCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEE
T ss_pred HHHhhcCCCCHHHHHHHhCCC-HHHHHHHHH-HHHHCCCEEEe
Confidence 333444569999999999997 777777665 78888999765
No 144
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=22.01 E-value=65 Score=24.59 Aligned_cols=27 Identities=15% Similarity=0.286 Sum_probs=23.1
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhH
Q 025901 108 KVLPYDELMEELDVTNVRELEDFLINECM 136 (246)
Q Consensus 108 k~isy~~I~~~L~i~~~~evE~llI~~aI 136 (246)
..+||.+|++.||++ ...|...+- .|.
T Consensus 108 ~g~s~~EIA~~lgis-~~tV~~~l~-rar 134 (157)
T 2lfw_A 108 EGFSPEDAAYLIEVD-TSEVETLVT-EAL 134 (157)
T ss_dssp SCCCHHHHHHTTTSC-HHHHHHHHH-HHH
T ss_pred cCCCHHHHHHHHCcC-HHHHHHHHH-HHH
Confidence 458999999999997 999998876 664
No 145
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=21.93 E-value=2.2e+02 Score=20.20 Aligned_cols=55 Identities=13% Similarity=0.119 Sum_probs=33.9
Q ss_pred cHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhc
Q 025901 166 QLGSMIQTLSNWLTTSDN---LLISIQEKIKWADSMNEMDKKHRKDLEEKVEEAKKSL 220 (246)
Q Consensus 166 q~~~l~~~L~~W~~~~~~---vl~~Ie~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 220 (246)
+++++...+..|+.+.+. .-..+++.+....+.....--.|.++|.+|+.++..|
T Consensus 22 e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl 79 (86)
T 3swk_A 22 ERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEI 79 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666655443 3445555566666666666667777777777777654
No 146
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=21.68 E-value=1.2e+02 Score=22.27 Aligned_cols=58 Identities=9% Similarity=0.193 Sum_probs=41.8
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcch
Q 025901 162 LRPGQLGSMIQTLSNWLTTSDNLLISIQEKIKWADSMNEMDKKHRKDLEEKVEEAKKSLSH 222 (246)
Q Consensus 162 l~~~q~~~l~~~L~~W~~~~~~vl~~Ie~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ 222 (246)
++|+++......|.+..+.+..-.+.+..+-.... .=+..++ ...+...+++.++++.
T Consensus 6 ~dpeElr~Fa~~L~~F~d~Lq~~~~~L~~~f~~L~--sWqDqkr-~kFee~fe~l~s~l~~ 63 (94)
T 3fx7_A 6 MDTEEVREFVGHLERFKELLREEVNSLSNHFHNLE--SWRDARR-DKFSEVLDNLKSTFNE 63 (94)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--SCCSHHH-HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--hHhhHHH-HHHHHHHHHHHHHHHH
Confidence 68899999999999999999999999998888774 2222222 3445555555555544
No 147
>3fav_A ESAT-6-like protein ESXB; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_A
Probab=21.44 E-value=2.1e+02 Score=19.92 Aligned_cols=59 Identities=8% Similarity=0.145 Sum_probs=33.4
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhhHHHHHHHHHHHHHHHHHHHHhc
Q 025901 162 LRPGQLGSMIQTLSNWLTTSDNLLISIQEKIK-----WADSMNEMDKKHRKDLEEKVEEAKKSL 220 (246)
Q Consensus 162 l~~~q~~~l~~~L~~W~~~~~~vl~~Ie~~i~-----~~~~~~~~~~~~~~~~~~~~~~~k~~~ 220 (246)
++++++......+..-...++..+..|+..+. |--..+..-.....++.....++...|
T Consensus 7 v~~~~l~~~A~~~~~~~~~l~~~l~~l~~~~~~L~~~W~G~A~~af~~~~~~w~~~~~~l~~~L 70 (101)
T 3fav_A 7 TDAATLAQEAGNFERISGDLKTQIDQVESTAGSLQGQWRGAAGTAAQAAVVRFQEAANKQKQEL 70 (101)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888888888888888888888888774 322223333334444444444444433
No 148
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=21.41 E-value=3.4e+02 Score=22.28 Aligned_cols=100 Identities=7% Similarity=0.027 Sum_probs=55.1
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEE-EecCCCCE-EEEEee----------cCCCCCCCcHHHHHHHHH
Q 025901 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG-KLDQLRRC-FEVQFA----------AGRDLRPGQLGSMIQTLS 175 (246)
Q Consensus 108 k~isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~G-kIDQ~~~~-v~V~~~----------~~Rdl~~~q~~~l~~~L~ 175 (246)
+.++..++++.+||+ .+.+-.|- + .||+.. +.|..++. .+=..- ..-.|+.+++..+.+
T Consensus 4 ~~~~i~e~a~~~gvs-~~tlr~y~--~---~gll~p~~~d~~~g~R~y~~~~~~~l~~i~~l~~~g~~l~~i~~~~~--- 74 (278)
T 1r8e_A 4 SYYSIGEVSKLANVS-IKALRYYD--K---IDLFKPAYVDPDTSYRYYTDSQLIHLDLIKSLKYIGTPLEEMKKAQD--- 74 (278)
T ss_dssp CEEEHHHHHHHHTCC-HHHHHHHH--H---TTSSCCSEECTTTCCEEEETGGGGHHHHHHHHHHTTCCHHHHHHHTT---
T ss_pred CcEeHHHHHHHHCcC-HHHHHHHH--H---CCCCCCCccCCCCCccccCHHHHHHHHHHHHHHHCCCCHHHHHHHHH---
Confidence 457889999999997 88887762 2 488864 56444442 221100 011122233333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 025901 176 NWLTTSDNLLISIQEKIKWADSMNEMDKKHRKDLEEKVEEAKKS 219 (246)
Q Consensus 176 ~W~~~~~~vl~~Ie~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~ 219 (246)
.. ...+...++++........++-.+.++.++..+...++.
T Consensus 75 ~~---~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~~~ 115 (278)
T 1r8e_A 75 LE---MEELFAFYTEQERQIREKLDFLSALEQTISLVKKRMKRQ 115 (278)
T ss_dssp SC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11 344556666666666666655556666666655555443
No 149
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=20.93 E-value=2.3e+02 Score=20.05 Aligned_cols=33 Identities=15% Similarity=0.189 Sum_probs=28.8
Q ss_pred cChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE
Q 025901 110 LPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (246)
Q Consensus 110 isy~~I~~~L~i~~~~evE~llI~~aI~~gLI~Gk 144 (246)
++...|+..++++ .+-+-..+= .....|+|.=.
T Consensus 21 ~~~t~La~~~~ls-~~~~~~~l~-~L~~~GLI~~~ 53 (95)
T 1r7j_A 21 SPKTRIMYGANLS-YALTGRYIK-MLMDLEIIRQE 53 (95)
T ss_dssp BCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEE
T ss_pred CCHHHHHHHhCcC-HHHHHHHHH-HHHHCCCeEEE
Confidence 9999999999997 888887764 78889999866
No 150
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=20.89 E-value=84 Score=19.63 Aligned_cols=23 Identities=13% Similarity=0.313 Sum_probs=18.0
Q ss_pred ccChHHHHHHcCCCChHHHHHHHH
Q 025901 109 VLPYDELMEELDVTNVRELEDFLI 132 (246)
Q Consensus 109 ~isy~~I~~~L~i~~~~evE~llI 132 (246)
-.|+.+|++.|+++ ...|...+=
T Consensus 13 g~s~~eIA~~l~is-~~tV~~~~~ 35 (61)
T 2jpc_A 13 GYTNHGISEKLHIS-IKTVETHRM 35 (61)
T ss_dssp SCCSHHHHHHTCSC-HHHHHHHHH
T ss_pred CCCHHHHHHHhCCC-HHHHHHHHH
Confidence 36899999999997 777776543
No 151
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=20.73 E-value=1.4e+02 Score=19.08 Aligned_cols=41 Identities=15% Similarity=0.185 Sum_probs=26.3
Q ss_pred CCCCcchHHHHHHHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHH
Q 025901 83 HLPQLVPDQVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLI 132 (246)
Q Consensus 83 ~l~~L~~~~~~KLr~LtllsLa~~~k~isy~~I~~~L~i~~~~evE~llI 132 (246)
.++.|++.+..=+.. + + .-.|+.+|++.++++ ...|...+=
T Consensus 8 ~~~~L~~~e~~il~~---~--~---~g~s~~eIA~~l~is-~~tV~~~~~ 48 (74)
T 1fse_A 8 SKPLLTKREREVFEL---L--V---QDKTTKEIASELFIS-EKTVRNHIS 48 (74)
T ss_dssp CCCCCCHHHHHHHHH---H--T---TTCCHHHHHHHHTSC-HHHHHHHHH
T ss_pred CCCCCCHHHHHHHHH---H--H---cCCCHHHHHHHHCCC-HHHHHHHHH
Confidence 356677766332222 1 1 234999999999997 777776554
No 152
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=20.23 E-value=1.3e+02 Score=17.13 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025901 168 GSMIQTLSNWLTTSDNLLISIQE 190 (246)
Q Consensus 168 ~~l~~~L~~W~~~~~~vl~~Ie~ 190 (246)
+.+..-|.+-+.+++++|..++.
T Consensus 2 Q~IkkELtQIK~kvDsLLe~Le~ 24 (28)
T 1txp_A 2 QAIKKELTQIKQKVDSLLENLEK 24 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Confidence 35667778888888888887763
Done!