Your job contains 1 sequence.
>025903
MAHRRCLHVLSRHAAALLSLKTPPTLPFSTSISLKGLTPFQHRSLISSTLGPTNWSHYRH
FSSNKNDDEGEDVDEDEDEDEETADESYEGEEIGDTVPDLGREYTLEEKEAEAAEIGYKV
LGPLRKSDRVFKKYEPAFAVVQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTI
IGRPMVPDAAVHAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRIVDIQGIEKRV
EVATAA
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 025903
(246 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2126699 - symbol:NFD1 "NUCLEAR FUSION DEFECTIV... 444 6.6e-42 1
TAIR|locus:2014711 - symbol:RPL21C "chloroplast ribosomal... 179 7.9e-14 1
TIGR_CMR|GSU_3236 - symbol:GSU_3236 "ribosomal protein L2... 114 7.7e-07 1
DICTYBASE|DDB_G0288799 - symbol:mrpl21 "ribosomal protein... 116 6.2e-06 1
TIGR_CMR|BA_4676 - symbol:BA_4676 "ribosomal protein L21"... 95 0.00013 1
TIGR_CMR|CBU_0385 - symbol:CBU_0385 "ribosomal protein L2... 91 0.00037 1
TIGR_CMR|CHY_0367 - symbol:CHY_0367 "ribosomal protein L2... 90 0.00048 1
TIGR_CMR|SPO_1990 - symbol:SPO_1990 "ribosomal protein L2... 104 0.00061 1
>TAIR|locus:2126699 [details] [associations]
symbol:NFD1 "NUCLEAR FUSION DEFECTIVE 1" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005840 "ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
[GO:0000741 "karyogamy" evidence=RCA;IMP] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0009553 "embryo sac development"
evidence=IMP] [GO:0009555 "pollen development" evidence=IMP]
[GO:0009567 "double fertilization forming a zygote and endosperm"
evidence=IMP] [GO:0001510 "RNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006606
"protein import into nucleus" evidence=RCA] [GO:0009560 "embryo sac
egg cell differentiation" evidence=RCA] [GO:0016572 "histone
phosphorylation" evidence=RCA] [GO:0051567 "histone H3-K9
methylation" evidence=RCA] InterPro:IPR001787 InterPro:IPR018258
Pfam:PF00829 PROSITE:PS01169 GO:GO:0005739 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0009555 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 GO:GO:0009553 EMBL:AL022198 GO:GO:0019843
EMBL:AL161578 GO:GO:0000741 GO:GO:0009567 PANTHER:PTHR21349
TIGRFAMs:TIGR00061 EMBL:AJ278909 EMBL:BT005870 EMBL:AY088563
IPI:IPI00547532 PIR:B85362 RefSeq:NP_567861.1 UniGene:At.23122
ProteinModelPortal:Q8L9A0 SMR:Q8L9A0 IntAct:Q8L9A0 STRING:Q8L9A0
PaxDb:Q8L9A0 PRIDE:Q8L9A0 EnsemblPlants:AT4G30930.1 GeneID:829217
KEGG:ath:AT4G30930 TAIR:At4g30930 eggNOG:NOG314874
InParanoid:Q8L9A0 OMA:ADMEVER PhylomeDB:Q8L9A0
ProtClustDB:CLSN2695801 Genevestigator:Q8L9A0 GermOnline:AT4G30930
Uniprot:Q8L9A0
Length = 270
Score = 444 (161.4 bits), Expect = 6.6e-42, P = 6.6e-42
Identities = 107/248 (43%), Positives = 132/248 (53%)
Query: 1 MAHRRCLHVLSRHAAALLSLKTPPTLPFSTSISLKGLTPFQHRSLISSTLGPTNWSHYRH 60
MA RC LSR A + S+ ++ I G T H ++I + N Y H
Sbjct: 1 MASLRCFRELSRRATTVFSINQTRSISSFHGIEFSG-TSISHGTVIPNRSLTRNLPWYSH 59
Query: 61 FSSNKNXXXXXXXXXXXXXXXXXXXXXXXXXXIGDTVPD-----LGREYTLEEKEAEAAE 115
+ +++ G+ D + REY+ EK EA E
Sbjct: 60 WYRSQDRCFSSNTKDTDEDEESSEGEDDDEEE-GEDFEDSADMEVEREYSPAEKVEEAEE 118
Query: 116 IGYKVLGPLRKSDRVFKKYEPAFAVVQ-----FKVSNGDSIFTERLKFCEVNDKLILNKV 170
IGYKV+GPL+ S+R+FK YEP FA+VQ FKVSNGDSIFTE+LKFC++NDKL L KV
Sbjct: 119 IGYKVMGPLKPSERLFKPYEPVFAIVQIGSHQFKVSNGDSIFTEKLKFCDINDKLELTKV 178
Query: 171 LLLGSQHQTIIGRPMVPDXXXXXXXXXXXLDAKVIIFXXXXXXXXXXXXGHRQELTKLRI 230
LLLGS QTIIGRP++PD LD KV+IF GHRQELTKLRI
Sbjct: 179 LLLGSASQTIIGRPILPDATVHAVVEEHALDEKVLIFKKKRRKNYRRTRGHRQELTKLRI 238
Query: 231 VDIQGIEK 238
DIQGIEK
Sbjct: 239 TDIQGIEK 246
>TAIR|locus:2014711 [details] [associations]
symbol:RPL21C "chloroplast ribosomal protein L21"
species:3702 "Arabidopsis thaliana" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA;ISS] [GO:0005840 "ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0009409 "response to cold"
evidence=IEP;RCA] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0009658 "chloroplast organization" evidence=IMP] [GO:0009790
"embryo development" evidence=IMP] [GO:0009793 "embryo development
ending in seed dormancy" evidence=IMP] [GO:0010027 "thylakoid
membrane organization" evidence=RCA;IMP] [GO:0006364 "rRNA
processing" evidence=RCA] [GO:0009902 "chloroplast relocation"
evidence=RCA] [GO:0010207 "photosystem II assembly" evidence=RCA]
[GO:0035304 "regulation of protein dephosphorylation" evidence=RCA]
[GO:0042742 "defense response to bacterium" evidence=RCA]
[GO:0042793 "transcription from plastid promoter" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR001787 InterPro:IPR018258 Pfam:PF00829
PROSITE:PS01169 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005634 GO:GO:0009570 GO:GO:0006412 GO:GO:0009409
GO:GO:0009941 GO:GO:0009658 GO:GO:0009793 GO:GO:0010027
GO:GO:0005840 GO:GO:0003735 GO:GO:0019843 EMBL:AC007887 EMBL:Z49787
EMBL:Y15964 EMBL:AY058118 EMBL:AF428363 EMBL:AY116944
IPI:IPI00532845 PIR:S71282 RefSeq:NP_174808.1 UniGene:At.23722
ProteinModelPortal:P51412 SMR:P51412 STRING:P51412 PaxDb:P51412
PRIDE:P51412 EnsemblPlants:AT1G35680.1 GeneID:840472
KEGG:ath:AT1G35680 GeneFarm:195 TAIR:At1g35680 eggNOG:COG0261
HOGENOM:HOG000238965 InParanoid:P51412 KO:K02888 OMA:TNATVHA
PhylomeDB:P51412 ProtClustDB:CLSN2914377 Genevestigator:P51412
GermOnline:AT1G35680 PANTHER:PTHR21349 TIGRFAMs:TIGR00061
Uniprot:P51412
Length = 220
Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
Identities = 45/136 (33%), Positives = 70/136 (51%)
Query: 108 EKEAEAAEIGYKVLGPLRKSDRVFKKYEPAFAVV-----QFKVSNGDSIFTERLKFCEVN 162
E E E +I V+ + + K E FAV+ Q+ V G ++T+RLK V+
Sbjct: 71 EAEPETTDIEAVVVSDVSEVTEEKAKREEIFAVIMVGGRQYIVFPGRYLYTQRLKDANVD 130
Query: 163 DKLILNKVLLLGSQHQTIIGRPMVPDXXXXXXXXXXXLDAKVIIFXXXXXXXXXXXXGHR 222
D+++LNKVLL+G++ T IG+P+V + L+ KV++F GHR
Sbjct: 131 DQIVLNKVLLVGTKTHTYIGKPVVTNATVHAVVESQGLNDKVVVFKYKPKKKYRRNIGHR 190
Query: 223 QELTKLRIVDIQGIEK 238
Q T++RI I G E+
Sbjct: 191 QPNTRIRITGITGYEE 206
>TIGR_CMR|GSU_3236 [details] [associations]
symbol:GSU_3236 "ribosomal protein L21" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] HAMAP:MF_01363
InterPro:IPR001787 InterPro:IPR018258 Pfam:PF00829 PROSITE:PS01169
GO:GO:0006412 GO:GO:0005840 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0003735 GO:GO:0019843 HOGENOM:HOG000036265 eggNOG:COG0261
KO:K02888 PANTHER:PTHR21349 TIGRFAMs:TIGR00061 ProtClustDB:PRK05573
OMA:KVTIIKF RefSeq:NP_954277.1 ProteinModelPortal:Q747M9
GeneID:2688294 KEGG:gsu:GSU3236 PATRIC:22029319
BioCyc:GSUL243231:GH27-3214-MONOMER Uniprot:Q747M9
Length = 102
Score = 114 (45.2 bits), Expect = 7.7e-07, P = 7.7e-07
Identities = 30/92 (32%), Positives = 43/92 (46%)
Query: 142 QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDXXXXXXXXXXXLD 201
Q+KVS GD + E+L+ V D + L VL++G + IG P+VP D
Sbjct: 11 QYKVSEGDFLKVEKLEGA-VGDTVELKDVLMVGGE-TVAIGTPLVPSASVVGRIVDQGKD 68
Query: 202 AKVIIFXXXXXXXXXXXXGHRQELTKLRIVDI 233
K+++F GHRQ T L+I I
Sbjct: 69 KKILVFKSKRRKNFRKMYGHRQPRTVLKIEKI 100
>DICTYBASE|DDB_G0288799 [details] [associations]
symbol:mrpl21 "ribosomal protein L21, mitochondrial"
species:44689 "Dictyostelium discoideum" [GO:0006412 "translation"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0003735 "structural constituent
of ribosome" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR001787 Pfam:PF00829
dictyBase:DDB_G0288799 GO:GO:0005739 GO:GO:0006412
GenomeReviews:CM000154_GR GO:GO:0003723 GO:GO:0005840 GO:GO:0003735
EMBL:AAFI02000125 eggNOG:COG0261 PANTHER:PTHR21349
TIGRFAMs:TIGR00061 RefSeq:XP_636527.1 ProteinModelPortal:Q54IF0
STRING:Q54IF0 EnsemblProtists:DDB0267021 GeneID:8626812
KEGG:ddi:DDB_G0288799 OMA:FAVVHIS Uniprot:Q54IF0
Length = 172
Score = 116 (45.9 bits), Expect = 6.2e-06, P = 6.2e-06
Identities = 35/113 (30%), Positives = 57/113 (50%)
Query: 137 AFAVV-----QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDXXX 191
+FAVV Q+KV GD I T++++ +V + ++L+KVLL+G++++TIIG+P++ +
Sbjct: 61 SFAVVHISGKQYKVIEGDIIMTDKIQV-DVGEHIVLDKVLLVGTKNETIIGKPIISNFKV 119
Query: 192 XXXXXXXXLDAKVIIFXXXXXXXXXXXXGHRQELTKLRIVDIQGIEKRVEVAT 244
V IF G + T +RI GI K E T
Sbjct: 120 HAYIEEQAKTEHVTIFKHKPRKNYKRTTGFQGLATYIRI---GGIIKGQETTT 169
>TIGR_CMR|BA_4676 [details] [associations]
symbol:BA_4676 "ribosomal protein L21" species:198094
"Bacillus anthracis str. Ames" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
HAMAP:MF_01363 InterPro:IPR001787 InterPro:IPR018258 Pfam:PF00829
PROSITE:PS01169 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 eggNOG:COG0261 KO:K02888 PANTHER:PTHR21349
TIGRFAMs:TIGR00061 ProtClustDB:PRK05573 RefSeq:NP_846890.1
RefSeq:YP_021324.1 RefSeq:YP_030589.1 ProteinModelPortal:Q81LE6
DNASU:1085870 EnsemblBacteria:EBBACT00000010321
EnsemblBacteria:EBBACT00000015606 EnsemblBacteria:EBBACT00000021517
GeneID:1085870 GeneID:2819827 GeneID:2850867 KEGG:ban:BA_4676
KEGG:bar:GBAA_4676 KEGG:bat:BAS4342 HOGENOM:HOG000036264
OMA:KVTIIKF BioCyc:BANT260799:GJAJ-4397-MONOMER
BioCyc:BANT261594:GJ7F-4545-MONOMER Uniprot:Q81LE6
Length = 102
Score = 95 (38.5 bits), Expect = 0.00013, P = 0.00013
Identities = 25/87 (28%), Positives = 38/87 (43%)
Query: 142 QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDXXXXXXXXXXXLD 201
Q KV G +I+ E+L E + + +KVL +G ++ + G P+V
Sbjct: 11 QIKVEAGQAIYIEKLDV-EAGETVTFDKVLFVGGENVKV-GSPVVEGATVTAKVEKQGRA 68
Query: 202 AKVIIFXXXXXXXXXXXXGHRQELTKL 228
K+I+F GHRQ TKL
Sbjct: 69 KKIIVFKYKAKKNNRKKQGHRQPYTKL 95
>TIGR_CMR|CBU_0385 [details] [associations]
symbol:CBU_0385 "ribosomal protein L21" species:227377
"Coxiella burnetii RSA 493" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] HAMAP:MF_01363 InterPro:IPR001787
InterPro:IPR018258 Pfam:PF00829 PROSITE:PS01169 GO:GO:0006412
GO:GO:0005840 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0003735
GO:GO:0019843 HOGENOM:HOG000036265 eggNOG:COG0261 KO:K02888
PANTHER:PTHR21349 TIGRFAMs:TIGR00061 ProtClustDB:PRK05573
OMA:KVTIIKF RefSeq:NP_819424.2 ProteinModelPortal:Q83EE0 SMR:Q83EE0
GeneID:1208268 KEGG:cbu:CBU_0385 PATRIC:17929467
BioCyc:CBUR227377:GJ7S-388-MONOMER Uniprot:Q83EE0
Length = 115
Score = 91 (37.1 bits), Expect = 0.00037, P = 0.00037
Identities = 26/103 (25%), Positives = 45/103 (43%)
Query: 142 QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDXXXXXXXXXXXLD 201
Q++V+ G + E+L +V + + VL++ + + IG P V D
Sbjct: 11 QYRVTEGQMLKVEKLAQ-DVGQSVKFDDVLMVAAGDELHIGTPSVKDAAVTAEVVDQGRQ 69
Query: 202 AKVIIFXXXXXXXXXXXXGHRQELTKLRIVDIQGIEKRVEVAT 244
AK+ I GHRQ+ T ++I +I + + EV T
Sbjct: 70 AKIEIIKFKRRKHHMKRQGHRQDFTAVKITEIALGKAKKEVKT 112
>TIGR_CMR|CHY_0367 [details] [associations]
symbol:CHY_0367 "ribosomal protein L21" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] HAMAP:MF_01363 InterPro:IPR001787 InterPro:IPR018258
Pfam:PF00829 PROSITE:PS01169 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 eggNOG:COG0261 KO:K02888 PANTHER:PTHR21349
TIGRFAMs:TIGR00061 HOGENOM:HOG000036264 OMA:KVTIIKF
RefSeq:YP_359230.1 ProteinModelPortal:Q3AF54 STRING:Q3AF54
GeneID:3728444 KEGG:chy:CHY_0367 PATRIC:21273895
BioCyc:CHYD246194:GJCN-368-MONOMER Uniprot:Q3AF54
Length = 103
Score = 90 (36.7 bits), Expect = 0.00048, P = 0.00048
Identities = 25/93 (26%), Positives = 38/93 (40%)
Query: 142 QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDXXXXXXXXXXXLD 201
Q+KV+ GD IF E+L E + +N+VL + G P V
Sbjct: 11 QYKVAEGDKIFVEKLN-AEPGSIVTINEVLAVVKDGSIKAGNPYVEGAKVNLKVVRHGKG 69
Query: 202 AKVIIFXXXXXXXXXXXXGHRQELTKLRIVDIQ 234
K+I+F GHRQ T++ + I+
Sbjct: 70 RKIIVFKYKPKKNYRRKYGHRQPFTEVIVEKIE 102
>TIGR_CMR|SPO_1990 [details] [associations]
symbol:SPO_1990 "ribosomal protein L21" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042255 "ribosome assembly" evidence=ISS] HAMAP:MF_01363
InterPro:IPR001787 InterPro:IPR003583 Pfam:PF00829 PROSITE:PS01169
SMART:SM00278 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677
GO:GO:0006412 GO:GO:0006281 GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 HOGENOM:HOG000036265 eggNOG:COG0261 KO:K02888
PANTHER:PTHR21349 TIGRFAMs:TIGR00061 RefSeq:YP_167225.1
ProteinModelPortal:Q5LRY0 GeneID:3193713 KEGG:sil:SPO1990
PATRIC:23377311 OMA:QDELNGG ProtClustDB:PRK12278 Uniprot:Q5LRY0
Length = 193
Score = 104 (41.7 bits), Expect = 0.00061, P = 0.00061
Identities = 33/107 (30%), Positives = 49/107 (45%)
Query: 142 QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDXXXXXXXXXXXLD 201
Q+KV GD + E+L + +K+ N VL+LG ++G P+V
Sbjct: 11 QYKVQAGDVLRVEKLA-ADAGEKVQFNDVLMLGGD-APVVGAPLVDGAAVQAEVIDQIKG 68
Query: 202 AKVIIFXXXXXXXXXXXX-GHRQELTKLRIVDI--QGIEKR-VEVAT 244
K+I F GHRQ+LT +RI +I G +K V+ AT
Sbjct: 69 EKLIHFVKRRRKHSSQRTKGHRQKLTLVRITEILTSGADKTGVKAAT 115
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.136 0.393 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 246 197 0.00082 111 3 11 22 0.45 32
31 0.44 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 8
No. of states in DFA: 587 (62 KB)
Total size of DFA: 153 KB (2093 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 14.84u 0.09s 14.93t Elapsed: 00:00:01
Total cpu time: 14.84u 0.09s 14.93t Elapsed: 00:00:01
Start: Sat May 11 08:03:21 2013 End: Sat May 11 08:03:22 2013