BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025903
(246 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8L9A0|RM21_ARATH 50S ribosomal protein L21, mitochondrial OS=Arabidopsis thaliana
GN=RPL21M PE=2 SV=1
Length = 270
Score = 206 bits (523), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 141/252 (55%), Positives = 173/252 (68%), Gaps = 20/252 (7%)
Query: 1 MAHRRCLHVLSRHAAALLSLKTPPTLP------FS-TSISLKGLTPFQHRSLISSTLGPT 53
MA RC LSR A + S+ ++ FS TSIS + P +RSL + +
Sbjct: 1 MASLRCFRELSRRATTVFSINQTRSISSFHGIEFSGTSISHGTVIP--NRSLTRNLPWYS 58
Query: 54 NW--SHYRHFSSNKNDDEGEDVDEDEDEDEETADESYEGEEIGDTVPDLGREYTLEEKEA 111
+W S R FSSN D + ++ + ++D+E E +E D ++ REY+ EK
Sbjct: 59 HWYRSQDRCFSSNTKDTDEDEESSEGEDDDEEEGEDFEDS--ADM--EVEREYSPAEKVE 114
Query: 112 EAAEIGYKVLGPLRKSDRVFKKYEPAFAVV-----QFKVSNGDSIFTERLKFCEVNDKLI 166
EA EIGYKV+GPL+ S+R+FK YEP FA+V QFKVSNGDSIFTE+LKFC++NDKL
Sbjct: 115 EAEEIGYKVMGPLKPSERLFKPYEPVFAIVQIGSHQFKVSNGDSIFTEKLKFCDINDKLE 174
Query: 167 LNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELT 226
L KVLLLGS QTIIGRP++PDA VHAVVEEHALD KV+IFKKKRRKNYRRT+GHRQELT
Sbjct: 175 LTKVLLLGSASQTIIGRPILPDATVHAVVEEHALDEKVLIFKKKRRKNYRRTRGHRQELT 234
Query: 227 KLRIVDIQGIEK 238
KLRI DIQGIEK
Sbjct: 235 KLRITDIQGIEK 246
>sp|P24613|RK21_SPIOL 50S ribosomal protein L21, chloroplastic OS=Spinacia oleracea
GN=RPL21 PE=1 SV=1
Length = 256
Score = 98.2 bits (243), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 59/105 (56%), Positives = 76/105 (72%), Gaps = 5/105 (4%)
Query: 138 FAVV-----QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVH 192
FAVV Q+ V G I+T+RLK VNDK++LNKVLL+G++ T IG P+V +AAVH
Sbjct: 124 FAVVVIGSRQYIVIPGRWIYTQRLKGATVNDKIVLNKVLLVGTKASTYIGTPIVTNAAVH 183
Query: 193 AVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRIVDIQGIE 237
AVVEE LD KVI+FK K++KNYRR GHRQ +T+++I I G E
Sbjct: 184 AVVEEQLLDDKVIVFKYKKKKNYRRNIGHRQPITRIKITGITGYE 228
>sp|B6IR01|RL21_RHOCS 50S ribosomal protein L21 OS=Rhodospirillum centenum (strain ATCC
51521 / SW) GN=rplU PE=3 SV=1
Length = 103
Score = 87.0 bits (214), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 64/102 (62%), Gaps = 6/102 (5%)
Query: 138 FAVV-----QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVH 192
FAV+ Q+KV+NGD I E+L + + L+ VL++ +T IG P+V AAV
Sbjct: 2 FAVIRTGGKQYKVANGDVIKVEKL-VADAGATVTLDDVLMVSDAGKTTIGTPVVQGAAVT 60
Query: 193 AVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRIVDIQ 234
A V + K+IIFKKKRR+NYRR GHRQ+LT LRI IQ
Sbjct: 61 AEVVAQSRGPKIIIFKKKRRQNYRRKNGHRQDLTVLRITGIQ 102
>sp|P51412|RK21_ARATH 50S ribosomal protein L21, chloroplastic OS=Arabidopsis thaliana
GN=RPL21 PE=2 SV=1
Length = 220
Score = 85.5 bits (210), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/136 (42%), Positives = 84/136 (61%), Gaps = 5/136 (3%)
Query: 108 EKEAEAAEIGYKVLGPLRKSDRVFKKYEPAFAVV-----QFKVSNGDSIFTERLKFCEVN 162
E E E +I V+ + + K E FAV+ Q+ V G ++T+RLK V+
Sbjct: 71 EAEPETTDIEAVVVSDVSEVTEEKAKREEIFAVIMVGGRQYIVFPGRYLYTQRLKDANVD 130
Query: 163 DKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKKRRKNYRRTKGHR 222
D+++LNKVLL+G++ T IG+P+V +A VHAVVE L+ KV++FK K +K YRR GHR
Sbjct: 131 DQIVLNKVLLVGTKTHTYIGKPVVTNATVHAVVESQGLNDKVVVFKYKPKKKYRRNIGHR 190
Query: 223 QELTKLRIVDIQGIEK 238
Q T++RI I G E+
Sbjct: 191 QPNTRIRITGITGYEE 206
>sp|Q54IF0|RM21_DICDI Probable 39S ribosomal protein L21, mitochondrial OS=Dictyostelium
discoideum GN=mrpl21 PE=3 SV=1
Length = 172
Score = 84.3 bits (207), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 73/115 (63%), Gaps = 9/115 (7%)
Query: 137 AFAVV-----QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAV 191
+FAVV Q+KV GD I T++++ +V + ++L+KVLL+G++++TIIG+P++ + V
Sbjct: 61 SFAVVHISGKQYKVIEGDIIMTDKIQ-VDVGEHIVLDKVLLVGTKNETIIGKPIISNFKV 119
Query: 192 HAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRIVDIQGIEKRVEVATAA 246
HA +EE A V IFK K RKNY+RT G + T +R I GI K E T
Sbjct: 120 HAYIEEQAKTEHVTIFKHKPRKNYKRTTGFQGLATYIR---IGGIIKGQETTTTT 171
>sp|Q2VZU4|RL21_MAGSA 50S ribosomal protein L21 OS=Magnetospirillum magneticum (strain
AMB-1 / ATCC 700264) GN=rplU PE=3 SV=1
Length = 100
Score = 80.9 bits (198), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 46/101 (45%), Positives = 66/101 (65%), Gaps = 10/101 (9%)
Query: 138 FAVVQ-----FKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVH 192
FAV+Q +KV++GD I E+L E +++L++VL++G + IG P+V A+V
Sbjct: 2 FAVIQTGGKQYKVASGDVIRVEKLA-GEAGAEVVLDQVLMVGDK----IGVPVVAGASVK 56
Query: 193 AVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRIVDI 233
A V A K+I+FKK+RR+N RR GHRQ+LT LRI DI
Sbjct: 57 ATVVAQARGEKIIVFKKRRRQNSRRKNGHRQDLTILRITDI 97
>sp|Q1GZ51|RL21_METFK 50S ribosomal protein L21 OS=Methylobacillus flagellatus (strain KT
/ ATCC 51484 / DSM 6875) GN=rplU PE=3 SV=1
Length = 104
Score = 78.6 bits (192), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 59/89 (66%), Gaps = 1/89 (1%)
Query: 142 QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALD 201
Q++V+ GD + E+L EV ++ L+KVLL+ T IG P+V A+V A V H
Sbjct: 11 QYRVAAGDKLKVEKLA-GEVGSEITLDKVLLVSDGDNTTIGSPLVQGASVQAKVVAHGRG 69
Query: 202 AKVIIFKKKRRKNYRRTKGHRQELTKLRI 230
KV+IFK +RRK+YR+T+GHRQ T+++I
Sbjct: 70 DKVLIFKMRRRKHYRKTQGHRQSFTEIQI 98
>sp|Q0AKX7|RL21_MARMM 50S ribosomal protein L21 OS=Maricaulis maris (strain MCS10)
GN=rplU PE=3 SV=1
Length = 223
Score = 77.8 bits (190), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 61/101 (60%), Gaps = 6/101 (5%)
Query: 138 FAVV-----QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVH 192
FAV+ Q++V+ GD I E+L+ D L L VL+LGS+ +G P + A V
Sbjct: 2 FAVIKTGGKQYRVAAGDEIRIEKLEGA-AGDTLDLGDVLMLGSEAGVTVGSPTIDGAQVI 60
Query: 193 AVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRIVDI 233
+ + K+I+FKK+RR+NYRRTKGHRQ T +RI +I
Sbjct: 61 GELLDTNRARKIIVFKKRRRQNYRRTKGHRQWGTVVRIAEI 101
>sp|A9BHC0|RL21_PETMO 50S ribosomal protein L21 OS=Petrotoga mobilis (strain DSM 10674 /
SJ95) GN=rplU PE=3 SV=1
Length = 104
Score = 77.4 bits (189), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 59/94 (62%)
Query: 142 QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALD 201
Q+KV I+TE++K + ++++L+KV+ L + + G+P V A V V EH D
Sbjct: 11 QYKVEKDQVIYTEKVKDVDPGNEVVLDKVIYLSKEEEKKAGKPYVEGAKVITEVVEHGKD 70
Query: 202 AKVIIFKKKRRKNYRRTKGHRQELTKLRIVDIQG 235
KV I K + RKNYRR KGHRQE T L+I +I+G
Sbjct: 71 RKVKIIKFEGRKNYRREKGHRQEYTALKIKEIEG 104
>sp|B8E0B4|RL21_DICTD 50S ribosomal protein L21 OS=Dictyoglomus turgidum (strain Z-1310 /
DSM 6724) GN=rplU PE=3 SV=1
Length = 105
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/92 (47%), Positives = 60/92 (65%), Gaps = 1/92 (1%)
Query: 142 QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALD 201
Q+KVS G + E+LK V D+++L+KVLL+G + + IIG+P V A V A V
Sbjct: 11 QYKVSVGSMVNVEKLK-ANVGDEVVLDKVLLVGKEDEVIIGQPYVEGAKVIAKVVRQDKY 69
Query: 202 AKVIIFKKKRRKNYRRTKGHRQELTKLRIVDI 233
KVI+FK KR+K+YRR GHRQ T+L I +I
Sbjct: 70 PKVIVFKFKRKKHYRRKYGHRQPYTQLSIKEI 101
>sp|Q3A1D6|RL21_PELCD 50S ribosomal protein L21 OS=Pelobacter carbinolicus (strain DSM
2380 / Gra Bd 1) GN=rplU PE=3 SV=1
Length = 102
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 62/93 (66%), Gaps = 2/93 (2%)
Query: 142 QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALD 201
Q+KVS GD + E+++ V D + L++VL++G + + IG P++P A V A + + D
Sbjct: 11 QYKVSEGDLVKIEKIEGA-VGDTIELDEVLMVGGE-EVKIGTPLLPGAKVTARIVQQGKD 68
Query: 202 AKVIIFKKKRRKNYRRTKGHRQELTKLRIVDIQ 234
KV++F KRRK YR+T GHRQ +T+L+I I+
Sbjct: 69 KKVLVFHSKRRKGYRKTYGHRQPITRLQITGIE 101
>sp|A9IM54|RL21_BART1 50S ribosomal protein L21 OS=Bartonella tribocorum (strain CIP
105476 / IBS 506) GN=rplU PE=3 SV=1
Length = 158
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 61/101 (60%), Gaps = 6/101 (5%)
Query: 138 FAVV-----QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVH 192
FAV+ Q+++ + E++ D + N VL++G + +IG P+V DA V
Sbjct: 2 FAVIKTGGKQYRIVANQVVKVEKV-IGNAGDVVEFNDVLMVGQEGSAVIGTPVVADARVT 60
Query: 193 AVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRIVDI 233
A + E A KVI FKK+RR+N +RT+GHRQE T LR+++I
Sbjct: 61 AEILEQARGRKVIAFKKRRRQNSKRTRGHRQEFTTLRVLEI 101
>sp|A5N6J9|RL21_CLOK5 50S ribosomal protein L21 OS=Clostridium kluyveri (strain ATCC 8527
/ DSM 555 / NCIMB 10680) GN=rplU PE=3 SV=1
Length = 103
Score = 75.5 bits (184), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 63/98 (64%), Gaps = 6/98 (6%)
Query: 138 FAVV-----QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVH 192
+AVV Q+KVS GD I+ E+L+ EV+ + L+KVL++ ++G+P+V A V
Sbjct: 2 YAVVATGGKQYKVSEGDIIYVEKLE-AEVDSTIELDKVLMINKDEGLVVGKPVVEGAKVK 60
Query: 193 AVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRI 230
A V + K+I+FK K +K+YR+ +GHRQ TKL+I
Sbjct: 61 AKVLKQGKAKKIIVFKYKPKKDYRKKQGHRQPYTKLQI 98
>sp|B9E018|RL21_CLOK1 50S ribosomal protein L21 OS=Clostridium kluyveri (strain NBRC
12016) GN=rplU PE=3 SV=1
Length = 103
Score = 75.5 bits (184), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 63/98 (64%), Gaps = 6/98 (6%)
Query: 138 FAVV-----QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVH 192
+AVV Q+KVS GD I+ E+L+ EV+ + L+KVL++ ++G+P+V A V
Sbjct: 2 YAVVATGGKQYKVSEGDIIYVEKLE-AEVDSTIELDKVLMINKDEGLVVGKPVVEGAKVK 60
Query: 193 AVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRI 230
A V + K+I+FK K +K+YR+ +GHRQ TKL+I
Sbjct: 61 AKVLKQGKAKKIIVFKYKPKKDYRKKQGHRQPYTKLQI 98
>sp|Q6G508|RL21_BARHE 50S ribosomal protein L21 OS=Bartonella henselae (strain ATCC 49882
/ Houston 1) GN=rplU PE=3 SV=1
Length = 158
Score = 75.5 bits (184), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 61/101 (60%), Gaps = 6/101 (5%)
Query: 138 FAVV-----QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVH 192
FAV+ Q++V + E++ D + N +L+ G + IIG P+V DA V
Sbjct: 2 FAVIKTGGKQYRVVANQVVRVEKI-IGNAGDVVEFNDILMAGQEDNAIIGAPVVRDALVT 60
Query: 193 AVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRIVDI 233
A + E A KVI FKK+RR+N +RT+GHRQE+T LRI++I
Sbjct: 61 AEIIEQARARKVIAFKKRRRQNSKRTRGHRQEVTTLRILEI 101
>sp|Q2RL02|RL21_MOOTA 50S ribosomal protein L21 OS=Moorella thermoacetica (strain ATCC
39073) GN=rplU PE=3 SV=1
Length = 104
Score = 75.1 bits (183), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 59/93 (63%), Gaps = 1/93 (1%)
Query: 142 QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALD 201
Q++VS GD++ E+L EV +K++L+KVL +G +G P V A V A V+
Sbjct: 11 QYRVSEGDTLRVEKLP-AEVGEKVVLDKVLAVGEGADLKVGNPYVEGAKVTASVQAQDKA 69
Query: 202 AKVIIFKKKRRKNYRRTKGHRQELTKLRIVDIQ 234
K+I+FK K +KNYRR +GHRQ T+L+I I+
Sbjct: 70 PKIIVFKYKPKKNYRRKQGHRQPYTQLQIEKIE 102
>sp|A7HT70|RL21_PARL1 50S ribosomal protein L21 OS=Parvibaculum lavamentivorans (strain
DS-1 / DSM 13023 / NCIMB 13966) GN=rplU PE=3 SV=1
Length = 103
Score = 75.1 bits (183), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 65/104 (62%), Gaps = 8/104 (7%)
Query: 138 FAVV-----QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTI-IGRPMVPDAAV 191
FAV+ Q++V+ D + ER E DK+ L +VL+LG + T+ +G P+V A V
Sbjct: 2 FAVIRTGGKQYRVAKDDVLEVER-NGGEAGDKIDL-EVLMLGGEGGTLKVGAPLVDGAKV 59
Query: 192 HAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRIVDIQG 235
A + EH K+ IFKK+RR+NYRR GHRQ+L ++I+DI G
Sbjct: 60 KAEIVEHTRGPKITIFKKRRRQNYRRKNGHRQDLMLVKILDIAG 103
>sp|B8DRP1|RL21_DESVM 50S ribosomal protein L21 OS=Desulfovibrio vulgaris (strain
Miyazaki F / DSM 19637) GN=rplU PE=3 SV=1
Length = 102
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 57/93 (61%), Gaps = 2/93 (2%)
Query: 142 QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALD 201
QF+V G IF E+L E +++++KVL+LG ++ G P V A V A V EH
Sbjct: 11 QFRVEEGAKIFVEKL-VAEAGSEIVIDKVLMLGGGAFSV-GAPYVEGAKVTAEVVEHGRG 68
Query: 202 AKVIIFKKKRRKNYRRTKGHRQELTKLRIVDIQ 234
K+I+FKK RR + R+ +GHRQ+ T L+I IQ
Sbjct: 69 EKLIVFKKWRRNDSRKKQGHRQDFTALKIKAIQ 101
>sp|Q5WES3|RL21_BACSK 50S ribosomal protein L21 OS=Bacillus clausii (strain KSM-K16)
GN=rplU PE=3 SV=1
Length = 102
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 56/94 (59%), Gaps = 2/94 (2%)
Query: 142 QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALD 201
Q KV G I+ E+L E +++ +KVL +G + + G P V A+V VE+H +
Sbjct: 11 QIKVEEGQEIYVEKLD-AEAGEEVSFDKVLFVGGESAKV-GAPFVEGASVTGTVEKHGRN 68
Query: 202 AKVIIFKKKRRKNYRRTKGHRQELTKLRIVDIQG 235
K+I++K K +KNYRR +GHRQ TK+ I I G
Sbjct: 69 KKIIVYKMKAKKNYRRKQGHRQPYTKVVIGKING 102
>sp|B5ELU4|RL21_ACIF5 50S ribosomal protein L21 OS=Acidithiobacillus ferrooxidans (strain
ATCC 53993) GN=rplU PE=3 SV=1
Length = 103
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 59/93 (63%), Gaps = 1/93 (1%)
Query: 142 QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALD 201
Q++V+ GD + ER++ E +L L++VL++G +GRP+V AAV A V
Sbjct: 11 QYRVTVGDKLRLERMEM-EPGAELALDRVLMVGVGDDVQVGRPLVEGAAVKATVLSQGRA 69
Query: 202 AKVIIFKKKRRKNYRRTKGHRQELTKLRIVDIQ 234
KV IFK +RRK+YR+ +GHRQ T++RI I+
Sbjct: 70 KKVHIFKMRRRKHYRKQQGHRQYFTEVRITGIE 102
>sp|B7J429|RL21_ACIF2 50S ribosomal protein L21 OS=Acidithiobacillus ferrooxidans (strain
ATCC 23270 / DSM 14882 / NCIB 8455) GN=rplU PE=3 SV=1
Length = 103
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 59/93 (63%), Gaps = 1/93 (1%)
Query: 142 QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALD 201
Q++V+ GD + ER++ E +L L++VL++G +GRP+V AAV A V
Sbjct: 11 QYRVTVGDKLRLERMEM-EPGAELALDRVLMVGVGDDVQVGRPLVEGAAVKATVLSQGRA 69
Query: 202 AKVIIFKKKRRKNYRRTKGHRQELTKLRIVDIQ 234
KV IFK +RRK+YR+ +GHRQ T++RI I+
Sbjct: 70 KKVHIFKMRRRKHYRKQQGHRQYFTEVRITGIE 102
>sp|A1VF58|RL21_DESVV 50S ribosomal protein L21 OS=Desulfovibrio vulgaris subsp. vulgaris
(strain DP4) GN=rplU PE=3 SV=1
Length = 102
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 55/89 (61%), Gaps = 2/89 (2%)
Query: 142 QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALD 201
QF+V G IF E+L E +++++KVL+LG +G P V +A V A V EH
Sbjct: 11 QFRVEEGSKIFVEKLA-SEAGSEIVIDKVLMLGG-GDVKVGAPYVENAKVTAEVVEHGRG 68
Query: 202 AKVIIFKKKRRKNYRRTKGHRQELTKLRI 230
KV+IFKK RR + R+ +GHRQ+ T L+I
Sbjct: 69 EKVVIFKKWRRNDSRKKQGHRQDFTALKI 97
>sp|Q72DK2|RL21_DESVH 50S ribosomal protein L21 OS=Desulfovibrio vulgaris (strain
Hildenborough / ATCC 29579 / NCIMB 8303) GN=rplU PE=3
SV=1
Length = 102
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 55/89 (61%), Gaps = 2/89 (2%)
Query: 142 QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALD 201
QF+V G IF E+L E +++++KVL+LG +G P V +A V A V EH
Sbjct: 11 QFRVEEGSKIFVEKLA-SEAGSEIVIDKVLMLGG-GDVKVGAPYVENAKVTAEVVEHGRG 68
Query: 202 AKVIIFKKKRRKNYRRTKGHRQELTKLRI 230
KV+IFKK RR + R+ +GHRQ+ T L+I
Sbjct: 69 EKVVIFKKWRRNDSRKKQGHRQDFTALKI 97
>sp|C1FVW8|RL21_CLOBJ 50S ribosomal protein L21 OS=Clostridium botulinum (strain Kyoto /
Type A2) GN=rplU PE=3 SV=1
Length = 104
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 64/99 (64%), Gaps = 7/99 (7%)
Query: 138 FAVV-----QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQ-TIIGRPMVPDAAV 191
+AVV Q+KV+ GD +F E+L +V+ + L+ VLL+G ++ T++G+PMV A V
Sbjct: 2 YAVVVTGGKQYKVAEGDVLFVEKLT-ADVDSTVELDNVLLVGKDNEETVVGKPMVEGAKV 60
Query: 192 HAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRI 230
A V KV++FK K +K+YR+ +GHRQ TK++I
Sbjct: 61 TAKVLAQGKAKKVVVFKYKPKKDYRKKQGHRQPYTKIQI 99
>sp|B1KZR6|RL21_CLOBM 50S ribosomal protein L21 OS=Clostridium botulinum (strain Loch
Maree / Type A3) GN=rplU PE=3 SV=1
Length = 104
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 64/99 (64%), Gaps = 7/99 (7%)
Query: 138 FAVV-----QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQH-QTIIGRPMVPDAAV 191
+AVV Q+KV+ GD +F E+L +V+ + L+ VLL+G + +T++G+PMV A V
Sbjct: 2 YAVVVTGGKQYKVAEGDVLFVEKLT-ADVDSTVELDNVLLVGKDNGETVVGKPMVEGAKV 60
Query: 192 HAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRI 230
A V KV++FK K +K+YR+ +GHRQ TK++I
Sbjct: 61 TAKVLAQGKAKKVVVFKYKPKKDYRKKQGHRQPYTKIQI 99
>sp|A7GHK5|RL21_CLOBL 50S ribosomal protein L21 OS=Clostridium botulinum (strain
Langeland / NCTC 10281 / Type F) GN=rplU PE=3 SV=1
Length = 104
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 64/99 (64%), Gaps = 7/99 (7%)
Query: 138 FAVV-----QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQH-QTIIGRPMVPDAAV 191
+AVV Q+KV+ GD +F E+L +V+ + L+ VLL+G + +T++G+PMV A V
Sbjct: 2 YAVVVTGGKQYKVAEGDVLFVEKLT-ADVDSTVELDNVLLVGKDNGETVVGKPMVEGAKV 60
Query: 192 HAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRI 230
A V KV++FK K +K+YR+ +GHRQ TK++I
Sbjct: 61 TAKVLAQGKAKKVVVFKYKPKKDYRKKQGHRQPYTKIQI 99
>sp|B1ILY8|RL21_CLOBK 50S ribosomal protein L21 OS=Clostridium botulinum (strain Okra /
Type B1) GN=rplU PE=3 SV=1
Length = 104
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 64/99 (64%), Gaps = 7/99 (7%)
Query: 138 FAVV-----QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQH-QTIIGRPMVPDAAV 191
+AVV Q+KV+ GD +F E+L +V+ + L+ VLL+G + +T++G+PMV A V
Sbjct: 2 YAVVVTGGKQYKVAEGDVLFVEKLT-ADVDSTVELDNVLLVGKDNGETVVGKPMVEGAKV 60
Query: 192 HAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRI 230
A V KV++FK K +K+YR+ +GHRQ TK++I
Sbjct: 61 TAKVLAQGKAKKVVVFKYKPKKDYRKKQGHRQPYTKIQI 99
>sp|C3L3J6|RL21_CLOB6 50S ribosomal protein L21 OS=Clostridium botulinum (strain 657 /
Type Ba4) GN=rplU PE=3 SV=1
Length = 104
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 64/99 (64%), Gaps = 7/99 (7%)
Query: 138 FAVV-----QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQH-QTIIGRPMVPDAAV 191
+AVV Q+KV+ GD +F E+L +V+ + L+ VLL+G + +T++G+PMV A V
Sbjct: 2 YAVVVTGGKQYKVAEGDVLFVEKLT-ADVDSTVELDNVLLVGKDNGETVVGKPMVEGAKV 60
Query: 192 HAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRI 230
A V KV++FK K +K+YR+ +GHRQ TK++I
Sbjct: 61 TAKVLAQGKAKKVVVFKYKPKKDYRKKQGHRQPYTKIQI 99
>sp|B5YEQ3|RL21_DICT6 50S ribosomal protein L21 OS=Dictyoglomus thermophilum (strain ATCC
35947 / DSM 3960 / H-6-12) GN=rplU PE=3 SV=1
Length = 105
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 61/92 (66%), Gaps = 1/92 (1%)
Query: 142 QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALD 201
Q+K+S G ++ E+L+ V D+++L+KVLL+G + +IG+P V A V A V +
Sbjct: 11 QYKLSVGSTVRVEKLQ-ANVGDEVVLDKVLLVGKDDEVLIGQPYVEGAKVIAEVVKQDKY 69
Query: 202 AKVIIFKKKRRKNYRRTKGHRQELTKLRIVDI 233
KVI+FK KR+K+YRR GHRQ T+L + +I
Sbjct: 70 PKVIVFKFKRKKHYRRKYGHRQPYTQLSVKEI 101
>sp|A5I669|RL21_CLOBH 50S ribosomal protein L21 OS=Clostridium botulinum (strain Hall /
ATCC 3502 / NCTC 13319 / Type A) GN=rplU PE=3 SV=1
Length = 104
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 64/99 (64%), Gaps = 7/99 (7%)
Query: 138 FAVV-----QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQH-QTIIGRPMVPDAAV 191
+AVV Q+KV+ GD +F E+L +V+ + L+ VLL+G + +T++G+PMV A V
Sbjct: 2 YAVVVTGGKQYKVAEGDILFVEKLT-ADVDSTVELDNVLLVGKDNGETVVGKPMVEGAKV 60
Query: 192 HAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRI 230
A V KV++FK K +K+YR+ +GHRQ TK++I
Sbjct: 61 TAKVLAQGKAKKVVVFKYKPKKDYRKKQGHRQPYTKIQI 99
>sp|A7FXU9|RL21_CLOB1 50S ribosomal protein L21 OS=Clostridium botulinum (strain ATCC
19397 / Type A) GN=rplU PE=3 SV=1
Length = 104
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 64/99 (64%), Gaps = 7/99 (7%)
Query: 138 FAVV-----QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQH-QTIIGRPMVPDAAV 191
+AVV Q+KV+ GD +F E+L +V+ + L+ VLL+G + +T++G+PMV A V
Sbjct: 2 YAVVVTGGKQYKVAEGDILFVEKLT-ADVDSTVELDNVLLVGKDNGETVVGKPMVEGAKV 60
Query: 192 HAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRI 230
A V KV++FK K +K+YR+ +GHRQ TK++I
Sbjct: 61 TAKVLAQGKAKKVVVFKYKPKKDYRKKQGHRQPYTKIQI 99
>sp|A6UDV2|RL21_SINMW 50S ribosomal protein L21 OS=Sinorhizobium medicae (strain WSM419)
GN=rplU PE=3 SV=1
Length = 124
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 60/101 (59%), Gaps = 6/101 (5%)
Query: 138 FAVV-----QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVH 192
FAV+ Q++V+ D I E+L DK+ ++L++G+ IG P V A V
Sbjct: 2 FAVIKTGGKQYRVAANDVITIEKLD-GAAGDKIEFTEILMVGAGADATIGAPFVEGAVVS 60
Query: 193 AVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRIVDI 233
A V +H KVI FKK+RR+N +RT+GHRQ T +RI+DI
Sbjct: 61 AEVVDHGRAKKVIAFKKRRRQNSKRTRGHRQHHTIVRILDI 101
>sp|Q165Y2|RL21_ROSDO 50S ribosomal protein L21 OS=Roseobacter denitrificans (strain ATCC
33942 / OCh 114) GN=rplU PE=3 SV=2
Length = 216
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 64/102 (62%), Gaps = 8/102 (7%)
Query: 138 FAVV-----QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVH 192
FAV+ Q+KV GD + E+L + + + N+VL+LG ++ T++G P V DA V
Sbjct: 2 FAVLKTGGKQYKVQAGDMLRVEKLA-ADAGETVQFNEVLMLGGEN-TVVGAPFVKDAGVQ 59
Query: 193 AVVEEHALDAKVIIFKKKRRK-NYRRTKGHRQELTKLRIVDI 233
A V + KVI F K+RRK + +RTKGHRQ+LT +++ DI
Sbjct: 60 AEVVDQIKGEKVINFVKRRRKHSSKRTKGHRQKLTLVKVTDI 101
>sp|A3PQI7|RL21_RHOS1 50S ribosomal protein L21 OS=Rhodobacter sphaeroides (strain ATCC
17029 / ATH 2.4.9) GN=rplU PE=3 SV=1
Length = 131
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/102 (43%), Positives = 60/102 (58%), Gaps = 8/102 (7%)
Query: 138 FAVV-----QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVH 192
FAV+ Q+KV GD + E+L CE DK+ N +L++G T+ G P V AAV
Sbjct: 2 FAVLKTGGKQYKVQAGDVLRVEKLA-CEAGDKIQFNDILMVGGDSVTV-GAPFVAGAAVQ 59
Query: 193 AVVEEHALDAKVIIFKKKRRK-NYRRTKGHRQELTKLRIVDI 233
A V K I + K+RRK + +RTKGHRQ+LT LR+ D+
Sbjct: 60 AEVIAQIKGEKTIHYVKRRRKHSSQRTKGHRQQLTLLRVTDV 101
>sp|Q18B24|RL21_CLOD6 50S ribosomal protein L21 OS=Clostridium difficile (strain 630)
GN=rplU PE=3 SV=1
Length = 103
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 142 QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALD 201
Q+KVS GD +F E+L+ D + LN+VL + +G P+V A+V A V E
Sbjct: 11 QYKVSEGDVLFVEKLE-ANAGDVVTLNEVLACSKDGELKLGSPVVEGASVQAKVVEQGKA 69
Query: 202 AKVIIFKKKRRKNYRRTKGHRQELTKLRI 230
KVI+FK K +K+YRR +GHRQ TK+ +
Sbjct: 70 KKVIVFKYKAKKDYRRKQGHRQSYTKIVV 98
>sp|B9KW01|RL21_RHOSK 50S ribosomal protein L21 OS=Rhodobacter sphaeroides (strain KD131
/ KCTC 12085) GN=rplU PE=3 SV=1
Length = 131
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/102 (43%), Positives = 60/102 (58%), Gaps = 8/102 (7%)
Query: 138 FAVV-----QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVH 192
FAV+ Q+KV GD + E+L CE DK+ N +L++G T+ G P V AAV
Sbjct: 2 FAVLKTGGKQYKVQAGDVLRVEKLA-CEAGDKIQFNDILMVGGDSVTV-GAPFVAGAAVQ 59
Query: 193 AVVEEHALDAKVIIFKKKRRK-NYRRTKGHRQELTKLRIVDI 233
A V K I + K+RRK + +RTKGHRQ+LT LR+ D+
Sbjct: 60 AEVIAQIKGEKTIHYVKRRRKHSSQRTKGHRQQLTLLRVTDV 101
>sp|Q3IXY2|RL21_RHOS4 50S ribosomal protein L21 OS=Rhodobacter sphaeroides (strain ATCC
17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=rplU PE=3 SV=1
Length = 131
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/102 (43%), Positives = 60/102 (58%), Gaps = 8/102 (7%)
Query: 138 FAVV-----QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVH 192
FAV+ Q+KV GD + E+L CE DK+ N +L++G T+ G P V AAV
Sbjct: 2 FAVLKTGGKQYKVQAGDVLRVEKLA-CEAGDKIQFNDILMVGGDSVTV-GAPFVAGAAVQ 59
Query: 193 AVVEEHALDAKVIIFKKKRRK-NYRRTKGHRQELTKLRIVDI 233
A V K I + K+RRK + +RTKGHRQ+LT LR+ D+
Sbjct: 60 AEVIAQIKGEKTIHYVKRRRKHSSQRTKGHRQQLTLLRVTDV 101
>sp|A1URM6|RL21_BARBK 50S ribosomal protein L21 OS=Bartonella bacilliformis (strain ATCC
35685 / KC583) GN=rplU PE=3 SV=1
Length = 157
Score = 71.2 bits (173), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 60/101 (59%), Gaps = 6/101 (5%)
Query: 138 FAVV-----QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVH 192
FAV+ Q++V + E++ D + + VL++G IIG P+V DA+V
Sbjct: 2 FAVIKTGGKQYRVVANQVLKVEKI-VGNAGDVVNFSDVLMVGEGDNAIIGAPIVADASVT 60
Query: 193 AVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRIVDI 233
A + KVI FKK+RR+N +RT+GHRQE+T LRIV+I
Sbjct: 61 AEIIGQERARKVISFKKRRRQNSKRTRGHRQEITTLRIVEI 101
>sp|A9M887|RL21_BRUC2 50S ribosomal protein L21 OS=Brucella canis (strain ATCC 23365 /
NCTC 10854) GN=rplU PE=3 SV=1
Length = 142
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 61/101 (60%), Gaps = 10/101 (9%)
Query: 138 FAVV-----QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVH 192
FAV+ Q++V+ D I E++ E D + +VL++GS IG P V A V
Sbjct: 2 FAVIKTGGKQYRVAANDLIKVEKVA-GEAGDIVEFAEVLMVGST----IGAPTVAGALVT 56
Query: 193 AVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRIVDI 233
A V E + KVI FKK+RR+N +RT+GHRQELT +RI +I
Sbjct: 57 AEVVEQSRGRKVIAFKKRRRQNSKRTRGHRQELTTIRISEI 97
>sp|Q747M9|RL21_GEOSL 50S ribosomal protein L21 OS=Geobacter sulfurreducens (strain ATCC
51573 / DSM 12127 / PCA) GN=rplU PE=3 SV=1
Length = 102
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 56/89 (62%), Gaps = 2/89 (2%)
Query: 142 QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALD 201
Q+KVS GD + E+L+ V D + L VL++G + IG P+VP A+V + + D
Sbjct: 11 QYKVSEGDFLKVEKLEGA-VGDTVELKDVLMVGGE-TVAIGTPLVPSASVVGRIVDQGKD 68
Query: 202 AKVIIFKKKRRKNYRRTKGHRQELTKLRI 230
K+++FK KRRKN+R+ GHRQ T L+I
Sbjct: 69 KKILVFKSKRRKNFRKMYGHRQPRTVLKI 97
>sp|A9BP70|RL21_DELAS 50S ribosomal protein L21 OS=Delftia acidovorans (strain DSM 14801
/ SPH-1) GN=rplU PE=3 SV=1
Length = 103
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 62/92 (67%), Gaps = 1/92 (1%)
Query: 142 QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALD 201
Q++V+ G+ I E++ +V ++++++VL +G+ + +G P+V A+V A V H
Sbjct: 11 QYRVAAGEKIKVEQIA-ADVGQEVVIDQVLAVGNGAEIKVGTPLVSGASVKATVVAHGKH 69
Query: 202 AKVIIFKKKRRKNYRRTKGHRQELTKLRIVDI 233
KV IFK +RRK+Y++ +GHRQ+ T+L+IV I
Sbjct: 70 DKVHIFKMRRRKHYQKRQGHRQQFTELQIVAI 101
>sp|A6LQR6|RL21_CLOB8 50S ribosomal protein L21 OS=Clostridium beijerinckii (strain ATCC
51743 / NCIMB 8052) GN=rplU PE=3 SV=1
Length = 103
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
Query: 142 QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALD 201
Q++V GD I+ E+L +V+ + LN+VL +G++ +G P+V A V A V
Sbjct: 11 QYRVQEGDVIYVEKLN-ADVDSTVELNEVLAVGTEEGIKVGAPVVEGAKVVAKVAAQGKA 69
Query: 202 AKVIIFKKKRRKNYRRTKGHRQELTKLRIVDIQ 234
KV++FK K +K+YRR GHRQ TKL I I+
Sbjct: 70 KKVVVFKYKSKKDYRRKNGHRQPYTKLVIEKIE 102
>sp|B5E956|RL21_GEOBB 50S ribosomal protein L21 OS=Geobacter bemidjiensis (strain Bem /
ATCC BAA-1014 / DSM 16622) GN=rplU PE=3 SV=1
Length = 102
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 61/98 (62%), Gaps = 7/98 (7%)
Query: 138 FAVV-----QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVH 192
+AVV Q+KVS GD + E+L+ V D + +++L++G + +IG P+VP A+V
Sbjct: 2 YAVVKTGGKQYKVSEGDFLKVEKLEGA-VGDTVEFSEILMVGG-DKVVIGTPLVPSASVV 59
Query: 193 AVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRI 230
+ E D K+++FK KRRKN R+ GHRQ T L+I
Sbjct: 60 GKIVEQGKDKKILVFKSKRRKNTRKLNGHRQLRTILKI 97
>sp|Q8XVK8|RL21_RALSO 50S ribosomal protein L21 OS=Ralstonia solanacearum (strain
GMI1000) GN=rplU PE=3 SV=1
Length = 103
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 62/98 (63%), Gaps = 6/98 (6%)
Query: 138 FAVV-----QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVH 192
+AVV Q+KV+ G+ + E++ +V ++ L++VL +G+ Q +G P+V AAV
Sbjct: 2 YAVVKTGGKQYKVAAGEKLKVEQIP-ADVGAEITLDQVLAVGAGDQLKVGAPLVSGAAVK 60
Query: 193 AVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRI 230
A V H KV IFK +RRK+Y++ +GHRQ T+LRI
Sbjct: 61 ATVISHGRHDKVKIFKMRRRKHYQKHQGHRQNYTELRI 98
>sp|B2UCV5|RL21_RALPJ 50S ribosomal protein L21 OS=Ralstonia pickettii (strain 12J)
GN=rplU PE=3 SV=1
Length = 103
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 62/98 (63%), Gaps = 6/98 (6%)
Query: 138 FAVV-----QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVH 192
+AVV Q+KV+ G+ + E++ +V ++ L++VL +G+ Q +G P+V AAV
Sbjct: 2 YAVVKTGGKQYKVAAGEKLKVEQIP-ADVGAEITLDQVLAVGAGDQLKVGAPLVSGAAVK 60
Query: 193 AVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRI 230
A V H KV IFK +RRK+Y++ +GHRQ T+LRI
Sbjct: 61 ATVISHGRHDKVHIFKMRRRKHYQKRQGHRQNYTELRI 98
>sp|Q7NZS3|RL21_CHRVO 50S ribosomal protein L21 OS=Chromobacterium violaceum (strain ATCC
12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 /
NCTC 9757) GN=rplU PE=3 SV=1
Length = 103
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 58/89 (65%), Gaps = 1/89 (1%)
Query: 142 QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALD 201
Q+KV+ G+ + E++ +V+ +++L +VL++ Q ++G P+V A V A V H
Sbjct: 11 QYKVAIGEKLKVEQIP-ADVDSQIVLEEVLMIADGEQVVVGAPLVSGATVKATVVSHGRG 69
Query: 202 AKVIIFKKKRRKNYRRTKGHRQELTKLRI 230
K+ IFK +RRK+Y++ +GHRQ T++RI
Sbjct: 70 EKIRIFKMRRRKHYQKHQGHRQNYTEIRI 98
>sp|B2A6B3|RL21_NATTJ 50S ribosomal protein L21 OS=Natranaerobius thermophilus (strain
ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=rplU PE=3
SV=1
Length = 105
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
Query: 142 QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALD 201
Q+KVS GD + E+L E +++ +KVLL+ +G P++ +A V V EH
Sbjct: 11 QYKVSEGDVLEIEKLS-QETEEQVTFDKVLLVKDDENVKVGTPVLEEAQVEGTVLEHGKG 69
Query: 202 AKVIIFKKKRRKNYRRTKGHRQELTKLRIVDIQ 234
KV +FK K +KNYRR +GHRQ +K++I I+
Sbjct: 70 EKVTVFKYKPKKNYRRKQGHRQPFSKVKIDKIK 102
>sp|A4XJS5|RL21_CALS8 50S ribosomal protein L21 OS=Caldicellulosiruptor saccharolyticus
(strain ATCC 43494 / DSM 8903) GN=rplU PE=3 SV=1
Length = 103
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Query: 142 QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALD 201
Q+KV GD + E+LK +V+ + ++KVL + S ++G+P V A V A V EHA D
Sbjct: 11 QYKVQEGDVLKVEKLK-ADVDSVVKIDKVLAISSDDGFVVGKPYVDGAYVEAKVLEHAKD 69
Query: 202 AKVIIFKKKRRKNYRRTKGHRQELTKLRIVDI 233
K+I+F K + Y R GHRQ TK++I I
Sbjct: 70 KKIIVFTYKSKTGYHRKLGHRQWYTKIQITKI 101
>sp|A4IRD1|RL21_GEOTN 50S ribosomal protein L21 OS=Geobacillus thermodenitrificans
(strain NG80-2) GN=rplU PE=3 SV=1
Length = 102
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 53/92 (57%), Gaps = 2/92 (2%)
Query: 142 QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALD 201
Q KV G I+ E+L E D + +KVL +G + IG P V A V A V++H
Sbjct: 11 QLKVQEGQEIYIEKLDANE-GDTVTFDKVLFVGGE-TVKIGNPTVEGATVTAKVQKHGRQ 68
Query: 202 AKVIIFKKKRRKNYRRTKGHRQELTKLRIVDI 233
K+I+FK K +KNYRR +GHRQ TK+ I I
Sbjct: 69 KKIIVFKYKAKKNYRRKQGHRQPYTKVVIEKI 100
>sp|A1KAC8|RL21_AZOSB 50S ribosomal protein L21 OS=Azoarcus sp. (strain BH72) GN=rplU
PE=3 SV=1
Length = 103
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
Query: 142 QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALD 201
Q++V+ G+ I E++ +V ++ +++VL++G IG P+V AAV A V H
Sbjct: 11 QYRVAAGEKIKVEQIP-ADVGSEITIDQVLMVGEGESVKIGTPVVSGAAVKATVVSHGRH 69
Query: 202 AKVIIFKKKRRKNYRRTKGHRQELTKLRI 230
KV IFK +RRK+Y++ +GHRQ T+LRI
Sbjct: 70 DKVKIFKMRRRKHYQKHQGHRQNYTELRI 98
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,182,838
Number of Sequences: 539616
Number of extensions: 4066548
Number of successful extensions: 55321
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1277
Number of HSP's successfully gapped in prelim test: 346
Number of HSP's that attempted gapping in prelim test: 40599
Number of HSP's gapped (non-prelim): 9043
length of query: 246
length of database: 191,569,459
effective HSP length: 114
effective length of query: 132
effective length of database: 130,053,235
effective search space: 17167027020
effective search space used: 17167027020
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)