Query 025903
Match_columns 246
No_of_seqs 144 out of 1122
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 10:53:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025903.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025903hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 CHL00075 rpl21 ribosomal prote 100.0 1.2E-37 2.6E-42 250.3 13.6 99 136-235 2-105 (108)
2 PRK05573 rplU 50S ribosomal pr 100.0 1.8E-37 3.9E-42 246.8 13.4 98 137-235 1-103 (103)
3 COG0261 RplU Ribosomal protein 100.0 7.3E-37 1.6E-41 244.2 12.0 98 137-235 1-103 (103)
4 TIGR00061 L21 ribosomal protei 100.0 2E-36 4.4E-41 240.5 12.6 96 138-234 1-101 (101)
5 PRK12278 50S ribosomal protein 100.0 3.8E-35 8.3E-40 260.3 13.5 98 137-235 1-103 (221)
6 PF00829 Ribosomal_L21p: Ribos 100.0 2.9E-35 6.3E-40 231.1 8.9 91 137-228 1-96 (96)
7 KOG1686 Mitochondrial/chloropl 100.0 8.3E-30 1.8E-34 214.0 10.1 134 112-245 1-139 (151)
8 PF06524 NOA36: NOA36 protein; 90.5 0.18 4E-06 47.5 2.4 9 80-88 280-288 (314)
9 PF04931 DNA_pol_phi: DNA poly 86.6 0.59 1.3E-05 48.5 3.3 7 111-117 707-713 (784)
10 PF05764 YL1: YL1 nuclear prot 73.4 3.2 6.8E-05 37.6 3.0 18 53-70 27-44 (240)
11 KOG3130 Uncharacterized conser 71.9 2.2 4.9E-05 42.5 1.8 8 121-128 355-362 (514)
12 KOG3130 Uncharacterized conser 69.1 3.1 6.7E-05 41.6 2.0 14 111-124 338-351 (514)
13 KOG4264 Nucleo-cytoplasmic pro 64.5 8.6 0.00019 39.7 4.1 20 56-75 57-76 (694)
14 PF11702 DUF3295: Protein of u 62.9 7 0.00015 39.7 3.2 9 80-88 307-315 (507)
15 KOG0772 Uncharacterized conser 62.4 4 8.6E-05 41.9 1.4 12 142-153 221-232 (641)
16 PF14851 FAM176: FAM176 family 59.9 14 0.0003 32.1 4.0 11 107-117 126-136 (153)
17 KOG1824 TATA-binding protein-i 58.9 7.9 0.00017 42.4 2.9 11 6-16 236-246 (1233)
18 PF12791 RsgI_N: Anti-sigma fa 58.5 10 0.00022 26.4 2.6 36 137-174 6-41 (56)
19 KOG2023 Nuclear transport rece 56.5 5.7 0.00012 42.1 1.4 9 81-89 362-370 (885)
20 PF05285 SDA1: SDA1; InterPro 56.2 6.1 0.00013 37.3 1.4 20 4-23 24-43 (324)
21 KOG1819 FYVE finger-containing 55.9 14 0.00031 38.3 4.0 24 167-195 531-554 (990)
22 PF05086 Dicty_REP: Dictyostel 55.3 5 0.00011 42.8 0.7 12 60-71 884-895 (911)
23 KOG0127 Nucleolar protein fibr 54.8 7.9 0.00017 40.1 2.0 17 141-157 285-301 (678)
24 TIGR00993 3a0901s04IAP86 chlor 53.0 5.9 0.00013 42.0 0.8 17 104-120 424-440 (763)
25 PF05285 SDA1: SDA1; InterPro 51.8 12 0.00027 35.3 2.7 8 12-19 25-32 (324)
26 KOG1686 Mitochondrial/chloropl 50.8 7.5 0.00016 33.8 1.0 56 130-186 88-151 (151)
27 PF13324 GCIP: Grap2 and cycli 48.8 9.1 0.0002 34.8 1.3 7 104-110 179-185 (275)
28 PHA03209 serine/threonine kina 47.9 29 0.00063 31.5 4.4 20 108-127 58-77 (357)
29 PF11421 Synthase_beta: ATP sy 47.1 17 0.00037 26.2 2.2 16 1-16 1-16 (49)
30 PF12720 DUF3807: Protein of u 46.5 18 0.0004 31.7 2.8 10 100-109 46-55 (172)
31 PF04050 Upf2: Up-frameshift s 44.6 7.3 0.00016 33.4 0.0 15 161-177 117-131 (170)
32 KOG2239 Transcription factor c 40.5 66 0.0014 29.4 5.4 45 106-153 66-115 (209)
33 COG3168 PilP Tfp pilus assembl 40.1 41 0.0009 29.8 3.9 48 118-172 98-151 (170)
34 PF04351 PilP: Pilus assembly 39.5 28 0.00061 29.1 2.8 30 118-154 79-114 (149)
35 COG3264 Small-conductance mech 39.2 36 0.00077 36.7 4.0 71 147-231 651-721 (835)
36 KOG1819 FYVE finger-containing 38.6 47 0.001 34.7 4.5 6 104-109 450-455 (990)
37 KOG2140 Uncharacterized conser 37.8 20 0.00043 37.4 1.8 7 136-142 457-463 (739)
38 TIGR03779 Bac_Flav_CT_M Bacter 37.6 4E+02 0.0087 26.7 10.7 102 94-205 216-320 (410)
39 KOG4364 Chromatin assembly fac 37.3 21 0.00046 37.8 2.0 11 46-56 489-499 (811)
40 PHA03346 US22 family homolog; 34.5 21 0.00046 36.3 1.5 13 52-64 377-392 (520)
41 KOG3540 Beta amyloid precursor 34.4 30 0.00064 35.6 2.4 6 35-40 171-176 (615)
42 PHA03211 serine/threonine kina 33.6 90 0.0019 30.5 5.5 11 99-109 131-141 (461)
43 PF04050 Upf2: Up-frameshift s 33.4 22 0.00048 30.4 1.2 12 219-230 129-140 (170)
44 PF02563 Poly_export: Polysacc 32.7 26 0.00056 26.2 1.3 42 142-191 10-51 (82)
45 PF13079 DUF3916: Protein of u 32.1 37 0.00079 29.6 2.3 21 3-23 43-63 (153)
46 PF08920 SF3b1: Splicing facto 31.1 31 0.00068 29.5 1.7 41 99-139 82-122 (144)
47 KOG4264 Nucleo-cytoplasmic pro 30.9 24 0.00051 36.7 1.1 6 1-6 1-6 (694)
48 PRK12766 50S ribosomal protein 29.8 36 0.00078 31.5 2.0 17 96-112 92-108 (232)
49 PF12508 DUF3714: Protein of u 29.1 3.8E+02 0.0083 24.1 8.3 66 132-205 50-117 (200)
50 COG5137 Histone chaperone invo 27.6 26 0.00055 32.8 0.6 15 99-114 203-217 (279)
51 PRK09570 rpoH DNA-directed RNA 26.8 82 0.0018 24.6 3.2 57 103-168 17-74 (79)
52 KOG1824 TATA-binding protein-i 26.7 29 0.00064 38.3 1.0 14 114-127 372-385 (1233)
53 PF11521 TFIIE-A_C-term: C-ter 26.1 11 0.00023 29.8 -1.8 11 103-113 64-74 (86)
54 cd04092 mtEFG2_II_like mtEFG2_ 25.5 75 0.0016 23.3 2.7 22 144-165 60-81 (83)
55 KOG2153 Protein involved in th 25.5 42 0.0009 35.5 1.8 20 71-90 149-168 (704)
56 KOG0127 Nucleolar protein fibr 24.8 98 0.0021 32.5 4.2 9 215-223 390-398 (678)
57 KOG0262 RNA polymerase I, larg 24.3 41 0.00089 38.2 1.5 12 143-154 1435-1446(1640)
58 PHA02664 hypothetical protein; 24.0 65 0.0014 32.0 2.7 14 104-117 513-526 (534)
59 cd03691 BipA_TypA_II BipA_TypA 23.8 79 0.0017 23.2 2.6 21 145-165 64-84 (86)
60 PF00717 Peptidase_S24: Peptid 23.2 60 0.0013 22.5 1.8 18 147-164 13-30 (70)
61 KOG0526 Nucleosome-binding fac 23.0 36 0.00078 35.3 0.8 13 131-143 534-546 (615)
62 KOG1980 Uncharacterized conser 22.5 61 0.0013 34.4 2.3 28 190-218 618-647 (754)
63 PF06130 PduL: Propanediol uti 22.3 86 0.0019 23.9 2.6 33 143-178 21-54 (71)
64 KOG0699 Serine/threonine prote 22.1 45 0.00097 33.6 1.2 39 62-100 277-315 (542)
65 cd04088 EFG_mtEFG_II EFG_mtEFG 21.9 98 0.0021 22.5 2.8 21 145-165 61-81 (83)
66 PF15402 Spc7_N: N-terminus of 21.5 63 0.0014 35.3 2.3 7 142-148 379-385 (927)
67 KOG4363 Putative growth respon 21.2 1E+02 0.0022 29.2 3.3 14 29-42 12-25 (270)
68 PF03153 TFIIA: Transcription 21.1 38 0.00081 31.9 0.5 7 135-141 332-338 (375)
69 PF05432 BSP_II: Bone sialopro 21.0 68 0.0015 30.6 2.1 16 57-72 39-57 (292)
70 PF03153 TFIIA: Transcription 20.8 26 0.00056 33.0 -0.7 12 115-126 329-340 (375)
71 PRK06033 hypothetical protein; 20.5 1.2E+02 0.0027 23.3 3.1 38 159-196 28-70 (83)
72 PF14851 FAM176: FAM176 family 20.2 73 0.0016 27.7 2.0 15 102-116 111-125 (153)
No 1
>CHL00075 rpl21 ribosomal protein L21
Probab=100.00 E-value=1.2e-37 Score=250.27 Aligned_cols=99 Identities=29% Similarity=0.502 Sum_probs=96.3
Q ss_pred ceEEEE-----EEEeeCCCEEEecccCccCCCCeeeeceEEEEecCCceEecCCccCCcEEEEEEEeecCCceeEEEEec
Q 025903 136 PAFAVV-----QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKK 210 (246)
Q Consensus 136 ~MYAIV-----QYKV~~GD~I~VerLk~~evGd~I~LdkVLlVgs~d~t~IG~P~L~gA~VkAtVlEh~KgkKViIFK~K 210 (246)
.||||| ||||++||+|.||+|+ +++|++|.|++|||+++++.+.+|+|||+||+|+|+|++|+||+||++||||
T Consensus 2 ~myAIi~~gGkQykV~~Gd~i~vekl~-~~~G~~i~l~~VL~~~~~~~~~iG~P~v~~a~V~a~V~~h~r~~Ki~vfK~k 80 (108)
T CHL00075 2 MTYAIIEAGGKQLWVEPGRFYDINHFP-LEPGTKILLNRVLLIRNESEILIGKPWLENATVKGRILHHFRGKKITVYKMR 80 (108)
T ss_pred cEEEEEEECCEEEEEeCCCEEEEEEcC-CCCCCEEEEEEEEEEecCCCeEECCcEecCcEEEEEEEeecCCCCEEEEEeC
Confidence 599999 7999999999999998 7999999999999999888899999999999999999999999999999999
Q ss_pred CCCCcccccCccCcceEEEEceEec
Q 025903 211 RRKNYRRTKGHRQELTKLRIVDIQG 235 (246)
Q Consensus 211 RRK~yrRk~GHRQ~yTrIRI~~I~~ 235 (246)
|||+|||++||||+||+|+|++|..
T Consensus 81 rRK~yrrk~GHRQ~~T~i~I~~I~~ 105 (108)
T CHL00075 81 PKKKTRKKQGHRQKLTRFLIDSISF 105 (108)
T ss_pred CCCCccCCCccCCCcEEEEEEEEEc
Confidence 9999999999999999999999976
No 2
>PRK05573 rplU 50S ribosomal protein L21; Validated
Probab=100.00 E-value=1.8e-37 Score=246.83 Aligned_cols=98 Identities=47% Similarity=0.746 Sum_probs=95.5
Q ss_pred eEEEE-----EEEeeCCCEEEecccCccCCCCeeeeceEEEEecCCceEecCCccCCcEEEEEEEeecCCceeEEEEecC
Q 025903 137 AFAVV-----QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKKR 211 (246)
Q Consensus 137 MYAIV-----QYKV~~GD~I~VerLk~~evGd~I~LdkVLlVgs~d~t~IG~P~L~gA~VkAtVlEh~KgkKViIFK~KR 211 (246)
||||| ||+|++||+|.||+|+ +++|++|.|++|||+++++++.+|+|+|+||+|+|+|++|++++|+++|||||
T Consensus 1 MyAIi~~gGkQykV~~Gd~i~v~~l~-~~~G~~i~l~~VL~~~~~~~~~iG~P~l~~a~V~A~V~~~~k~~Ki~vfK~kr 79 (103)
T PRK05573 1 MYAIIKTGGKQYKVEEGDVIKVEKLD-AEVGDTVEFDEVLLVGGGEEVKIGAPYVEGAKVTAEVVEHGRGKKVIVFKYKR 79 (103)
T ss_pred CEEEEEECCEEEEEeCCCEEEEcccC-CCCCCEEEEeEEEEEeCCCCEEECCeEcCCCEEEEEEEeccCCCcEEEEEEcC
Confidence 89999 7999999999999997 89999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccCccCcceEEEEceEec
Q 025903 212 RKNYRRTKGHRQELTKLRIVDIQG 235 (246)
Q Consensus 212 RK~yrRk~GHRQ~yTrIRI~~I~~ 235 (246)
||+|+|++||||.||+|+|++|.+
T Consensus 80 RK~y~r~~GHRQ~~T~i~I~~I~~ 103 (103)
T PRK05573 80 RKNYRKKQGHRQPYTKVKITSINA 103 (103)
T ss_pred CCCccccCCccCCcEEEEEEEEeC
Confidence 999999999999999999999963
No 3
>COG0261 RplU Ribosomal protein L21 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.3e-37 Score=244.20 Aligned_cols=98 Identities=46% Similarity=0.728 Sum_probs=95.6
Q ss_pred eEEEE-----EEEeeCCCEEEecccCccCCCCeeeeceEEEEecCCceEecCCccCCcEEEEEEEeecCCceeEEEEecC
Q 025903 137 AFAVV-----QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKKR 211 (246)
Q Consensus 137 MYAIV-----QYKV~~GD~I~VerLk~~evGd~I~LdkVLlVgs~d~t~IG~P~L~gA~VkAtVlEh~KgkKViIFK~KR 211 (246)
||||| ||+|++||+|.||+|. .++|++|+|++|||+++++.+.||.||++||+|+|+|++|+|++||++|||||
T Consensus 1 mYAii~tGGKQykV~~G~~i~vEkl~-~e~g~~v~f~~VL~v~~~~~v~iG~P~v~ga~V~aeV~~hgr~kKV~i~K~k~ 79 (103)
T COG0261 1 MYAIIKTGGKQYKVEEGDVIKVEKLD-AEPGDKVEFDEVLMVGGGEEVKIGAPYVEGAKVTAEVVEHGRGKKVIIFKYKR 79 (103)
T ss_pred CeEEEEECCEEEEEecCCEEEEEEcC-CCCCCEEEEEEEEEEcCCCceEECCceecCcEEEEEEhhhCCCceEEEEEecc
Confidence 99999 7999999999999999 79999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccCccCcceEEEEceEec
Q 025903 212 RKNYRRTKGHRQELTKLRIVDIQG 235 (246)
Q Consensus 212 RK~yrRk~GHRQ~yTrIRI~~I~~ 235 (246)
||+|+|++||||+||+|+|++|.+
T Consensus 80 rK~~~rk~GHRQ~yT~vkI~~I~~ 103 (103)
T COG0261 80 RKNYRKKQGHRQPYTRVKITGIVA 103 (103)
T ss_pred CcCcccccCcccceEEEEEEEeeC
Confidence 999999999999999999999964
No 4
>TIGR00061 L21 ribosomal protein L21. Eubacterial and chloroplast.
Probab=100.00 E-value=2e-36 Score=240.51 Aligned_cols=96 Identities=38% Similarity=0.629 Sum_probs=93.6
Q ss_pred EEEE-----EEEeeCCCEEEecccCccCCCCeeeeceEEEEecCCceEecCCccCCcEEEEEEEeecCCceeEEEEecCC
Q 025903 138 FAVV-----QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKKRR 212 (246)
Q Consensus 138 YAIV-----QYKV~~GD~I~VerLk~~evGd~I~LdkVLlVgs~d~t~IG~P~L~gA~VkAtVlEh~KgkKViIFK~KRR 212 (246)
|||| ||||++||+|.||+|+ .++|+.|.|++|||+++++++.+|+|+|+||+|+|+|++|++|+||++||||||
T Consensus 1 yAIi~~gGkQykV~~Gd~i~Ve~l~-~~~G~~i~l~~VLlv~~~~~~~iG~P~l~~a~V~a~V~~~~r~~Ki~vfK~krr 79 (101)
T TIGR00061 1 YAIVEIGGKQYKVEEGQTVRIEKLD-AAPGDTVEFDKVLMVNKGGDVKIGKPYVEGAKVVAEVEKHGRGKKVKVYKYRRR 79 (101)
T ss_pred CEEEEECCEEEEEeCCCEEEEcccC-CCCCCEEEEEEEEEEecCCCeEECCeEcCCCEEEEEEEeecCCCCEEEEEeCCC
Confidence 8999 7999999999999998 799999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCccCcceEEEEceEe
Q 025903 213 KNYRRTKGHRQELTKLRIVDIQ 234 (246)
Q Consensus 213 K~yrRk~GHRQ~yTrIRI~~I~ 234 (246)
|+|+|++||||+||+|+|++|.
T Consensus 80 K~y~r~~GHRQ~~T~i~I~~I~ 101 (101)
T TIGR00061 80 KHSRKKQGHRQPYTKVKVTKIV 101 (101)
T ss_pred CCccCCCccCCCcEEEEEEEeC
Confidence 9999999999999999999984
No 5
>PRK12278 50S ribosomal protein L21/unknown domain fusion protein; Provisional
Probab=100.00 E-value=3.8e-35 Score=260.27 Aligned_cols=98 Identities=46% Similarity=0.681 Sum_probs=95.9
Q ss_pred eEEEE-----EEEeeCCCEEEecccCccCCCCeeeeceEEEEecCCceEecCCccCCcEEEEEEEeecCCceeEEEEecC
Q 025903 137 AFAVV-----QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKKR 211 (246)
Q Consensus 137 MYAIV-----QYKV~~GD~I~VerLk~~evGd~I~LdkVLlVgs~d~t~IG~P~L~gA~VkAtVlEh~KgkKViIFK~KR 211 (246)
||||| ||||++||+|.|++|+ .++|++|.|++|||+++++.+.||+|||+|++|+|+|++|+||+||++|||||
T Consensus 1 MyAVI~~gGKQykV~~Gd~i~Vekl~-~~~G~~i~~~~VL~v~~~~~~~iG~P~v~~a~V~A~V~~~~kg~Ki~vfK~kr 79 (221)
T PRK12278 1 MFAVIKTGGKQYKVQAGDLLRVEKLA-AEAGETVQFGEVLMLGEGDNVTVGAPFVDGAAVQAEVIEQIKGDKVIHFKKRR 79 (221)
T ss_pred CEEEEEeCCEEEEEeCCCEEEEeccC-CCCCCEEEEeEEEEEecCCCeEECCeEecCCEEEEEEEeecCCCCEEEEEeCC
Confidence 99999 8999999999999998 69999999999999998899999999999999999999999999999999999
Q ss_pred CCCcccccCccCcceEEEEceEec
Q 025903 212 RKNYRRTKGHRQELTKLRIVDIQG 235 (246)
Q Consensus 212 RK~yrRk~GHRQ~yTrIRI~~I~~ 235 (246)
||+|||++||||.||+|+|++|..
T Consensus 80 RK~yrrk~GHRQ~~T~i~I~~I~~ 103 (221)
T PRK12278 80 RQSSRRTKGHRQLLTLVRITEILA 103 (221)
T ss_pred CCCcccCCCcCCCcEEEEEEEEEc
Confidence 999999999999999999999986
No 6
>PF00829 Ribosomal_L21p: Ribosomal prokaryotic L21 protein; InterPro: IPR001787 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L21 is one of the proteins from the large ribosomal subunit. In Escherichia coli, L21 is known to bind to the 23S rRNA in the presence of L20. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities, groups: Bacterial L21. Marchantia polymorpha chloroplast L21. Cyanelle L21. Plant chloroplast L21 (nuclear-encoded). Bacterial L21 is a protein of about 100 amino-acid residues, the mature form of the spinach chloroplast L21 has 200 residues.; GO: 0003723 RNA binding, 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2XG0_V 2X9S_V 2XG2_V 3UZ1_2 2Y19_V 2WDL_V 3V23_V 2WRO_V 2WRL_V 2Y11_V ....
Probab=100.00 E-value=2.9e-35 Score=231.13 Aligned_cols=91 Identities=54% Similarity=0.857 Sum_probs=88.4
Q ss_pred eEEEE-----EEEeeCCCEEEecccCccCCCCeeeeceEEEEecCCceEecCCccCCcEEEEEEEeecCCceeEEEEecC
Q 025903 137 AFAVV-----QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKKR 211 (246)
Q Consensus 137 MYAIV-----QYKV~~GD~I~VerLk~~evGd~I~LdkVLlVgs~d~t~IG~P~L~gA~VkAtVlEh~KgkKViIFK~KR 211 (246)
||||| ||+|++||+|.||+|. +++||+|+|++|||+++++++.+|+|||++|+|+|+|++|++++|+++|||||
T Consensus 1 myAIi~~ggkQykV~~gd~i~v~~l~-~~~G~~i~l~~VL~~~~~~~~~iG~P~l~~a~V~a~V~~~~k~~Ki~v~K~kr 79 (96)
T PF00829_consen 1 MYAIIEIGGKQYKVEEGDVIDVERLD-AEVGDKIELDKVLLIGSEDFTLIGRPYLEGAKVEATVLEHGKGKKIIVFKKKR 79 (96)
T ss_dssp -EEEEESSSEEEEESSSEEEEEESTS-SSTTSEEEETTEEEEETSSSTCSSSSSSSSSEEEEEEEEEEEEEEEEEEEEET
T ss_pred CEEEEEECCEEEEEeCCCEEEECCcC-cCCCCEEEEEEEEEEecCCCeEECCccCCCcEEEEEEEeccCCCcEEEEEECC
Confidence 99999 7999999999999995 89999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccCccCcceEE
Q 025903 212 RKNYRRTKGHRQELTKL 228 (246)
Q Consensus 212 RK~yrRk~GHRQ~yTrI 228 (246)
||+|+|++||||+||+|
T Consensus 80 RK~y~r~~GhRq~~T~i 96 (96)
T PF00829_consen 80 RKRYRRKQGHRQPYTRI 96 (96)
T ss_dssp TTTEEEEEEEEEEEEEE
T ss_pred ccccccCCccCCCeEEC
Confidence 99999999999999986
No 7
>KOG1686 consensus Mitochondrial/chloroplast ribosomal L21 protein [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=8.3e-30 Score=214.02 Aligned_cols=134 Identities=47% Similarity=0.533 Sum_probs=128.1
Q ss_pred HHHhcceEEeccCcccccccccCCceEEEE-----EEEeeCCCEEEecccCccCCCCeeeeceEEEEecCCceEecCCcc
Q 025903 112 EAAEIGYKVLGPLRKSDRVFKKYEPAFAVV-----QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMV 186 (246)
Q Consensus 112 ea~~i~~~v~~~l~~~~~~~k~~~~MYAIV-----QYKV~~GD~I~VerLk~~evGd~I~LdkVLlVgs~d~t~IG~P~L 186 (246)
||+.++++++|+|..+..-+.+|.+.|||| ||||+.||.|++++++++++||+|.|++|||+|+-+++.||+|.|
T Consensus 1 ea~~~e~v~vg~l~s~~~~~~kr~~~favv~v~srq~kvs~gd~iy~eg~~p~nv~d~i~l~kVlLvg~~~~T~~grpvv 80 (151)
T KOG1686|consen 1 MAASSETVTVGRLASACSHSIKRPSGFAVVSVGSRQRKVSSGDTIYTEGLKPKNVLDSIPLPKVLLVGPVEETRIGRPVV 80 (151)
T ss_pred CcccceeEEEeccchhhhhccccCCccEEEEEcceeEEecCCCeeeecCccccccccccccceEEEecCcceeEecCccc
Confidence 578899999999999999999999999999 799999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEEEeecCCceeEEEEecCCCCcccccCccCcceEEEEceEecccchhhhhhc
Q 025903 187 PDAAVHAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRIVDIQGIEKRVEVATA 245 (246)
Q Consensus 187 ~gA~VkAtVlEh~KgkKViIFK~KRRK~yrRk~GHRQ~yTrIRI~~I~~i~~p~~~~~a 245 (246)
++++|.|.|++++...|+++||+|++|+|||..||||+.|+|||++|.+|+.+....++
T Consensus 81 ~~vtv~aVv~e~g~~~kvvhfk~k~~k~tr~~~~~~qe~t~LrIt~it~ie~e~~~~v~ 139 (151)
T KOG1686|consen 81 KKVTVHAVVEEYGLLFKVVHFKSKQWKVTRRDLGHRQEATELRITCITGIELEKVLLVG 139 (151)
T ss_pred ccceEEEEeeeccccccEEEEEecchhhhhhhhcccCcccEEEEeeeeeeeeccceecc
Confidence 99999999999999999999999999999999999999999999999999887755443
No 8
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=90.48 E-value=0.18 Score=47.46 Aligned_cols=9 Identities=11% Similarity=0.483 Sum_probs=3.3
Q ss_pred ccccccccc
Q 025903 80 DEETADESY 88 (246)
Q Consensus 80 ~~~~~~~~~ 88 (246)
+||++|+|+
T Consensus 280 ~d~d~d~ee 288 (314)
T PF06524_consen 280 EDDDEDDEE 288 (314)
T ss_pred ccccccccc
Confidence 333333333
No 9
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=86.63 E-value=0.59 Score=48.48 Aligned_cols=7 Identities=43% Similarity=0.525 Sum_probs=3.3
Q ss_pred HHHHhcc
Q 025903 111 AEAAEIG 117 (246)
Q Consensus 111 ~ea~~i~ 117 (246)
+-+++.|
T Consensus 707 ~l~~aL~ 713 (784)
T PF04931_consen 707 ALAKALG 713 (784)
T ss_pred HHHHHhc
Confidence 3345555
No 10
>PF05764 YL1: YL1 nuclear protein; InterPro: IPR008895 The proteins in this family are designated YL1 []. They have been shown to be DNA-binding and may be transcription factors [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=73.42 E-value=3.2 Score=37.57 Aligned_cols=18 Identities=28% Similarity=0.619 Sum_probs=11.0
Q ss_pred CcccccceeecCCCCCCC
Q 025903 53 TNWSHYRHFSSNKNDDEG 70 (246)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~ 70 (246)
.||-|.-.|.-...|++-
T Consensus 27 ~~~~~~~~f~Eee~D~ef 44 (240)
T PF05764_consen 27 FFWNQYGLFQEEEDDEEF 44 (240)
T ss_pred hhhhhcccccccCCCccc
Confidence 467777677766555433
No 11
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.93 E-value=2.2 Score=42.51 Aligned_cols=8 Identities=13% Similarity=-0.064 Sum_probs=4.0
Q ss_pred eccCcccc
Q 025903 121 LGPLRKSD 128 (246)
Q Consensus 121 ~~~l~~~~ 128 (246)
-+||+.+.
T Consensus 355 Aq~lp~i~ 362 (514)
T KOG3130|consen 355 AQELPTIR 362 (514)
T ss_pred cccCCccC
Confidence 34555554
No 12
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.13 E-value=3.1 Score=41.56 Aligned_cols=14 Identities=21% Similarity=0.048 Sum_probs=6.4
Q ss_pred HHHHhcceEEeccC
Q 025903 111 AEAAEIGYKVLGPL 124 (246)
Q Consensus 111 ~ea~~i~~~v~~~l 124 (246)
++++.+--+-.|-.
T Consensus 338 ~~~~r~~~~stG~~ 351 (514)
T KOG3130|consen 338 EEAKRKRKNSTGSG 351 (514)
T ss_pred hHHHHHHhcccccc
Confidence 44554444444443
No 13
>KOG4264 consensus Nucleo-cytoplasmic protein MLN51 [General function prediction only]
Probab=64.51 E-value=8.6 Score=39.73 Aligned_cols=20 Identities=40% Similarity=0.446 Sum_probs=11.2
Q ss_pred cccceeecCCCCCCCCCCCC
Q 025903 56 SHYRHFSSNKNDDEGEDVDE 75 (246)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~ 75 (246)
+|.|.+-|-+--..+||+||
T Consensus 57 lHlrrvesa~~~e~~Ed~de 76 (694)
T KOG4264|consen 57 LHLRRVESAKPAESVEDDDE 76 (694)
T ss_pred cchhcccccCcccccccccc
Confidence 58887777554444444333
No 14
>PF11702 DUF3295: Protein of unknown function (DUF3295); InterPro: IPR021711 This family is conserved in fungi but the function is not known.
Probab=62.92 E-value=7 Score=39.70 Aligned_cols=9 Identities=11% Similarity=0.560 Sum_probs=6.3
Q ss_pred ccccccccc
Q 025903 80 DEETADESY 88 (246)
Q Consensus 80 ~~~~~~~~~ 88 (246)
||||+++||
T Consensus 307 dDDDDssDW 315 (507)
T PF11702_consen 307 DDDDDSSDW 315 (507)
T ss_pred cCCccchhh
Confidence 566677777
No 15
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=62.40 E-value=4 Score=41.94 Aligned_cols=12 Identities=17% Similarity=0.426 Sum_probs=6.1
Q ss_pred EEEeeCCCEEEe
Q 025903 142 QFKVSNGDSIFT 153 (246)
Q Consensus 142 QYKV~~GD~I~V 153 (246)
||-|+-+.+|.|
T Consensus 221 ~ys~Tg~~iLvv 232 (641)
T KOG0772|consen 221 QYSVTGDQILVV 232 (641)
T ss_pred eecCCCCeEEEE
Confidence 366654444443
No 16
>PF14851 FAM176: FAM176 family
Probab=59.85 E-value=14 Score=32.08 Aligned_cols=11 Identities=45% Similarity=0.377 Sum_probs=6.7
Q ss_pred HHHHHHHHhcc
Q 025903 107 EEKEAEAAEIG 117 (246)
Q Consensus 107 ~e~~~ea~~i~ 117 (246)
||++.+-++||
T Consensus 126 EeRe~iirEIW 136 (153)
T PF14851_consen 126 EERERIIREIW 136 (153)
T ss_pred HHHHHHHHHHH
Confidence 44555666777
No 17
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=58.88 E-value=7.9 Score=42.45 Aligned_cols=11 Identities=36% Similarity=0.779 Sum_probs=6.7
Q ss_pred HHHHHHHhhhh
Q 025903 6 CLHVLSRHAAA 16 (246)
Q Consensus 6 ~~~~~~~~~~~ 16 (246)
||-++.|++--
T Consensus 236 ~l~~i~r~ag~ 246 (1233)
T KOG1824|consen 236 CLAAICRQAGH 246 (1233)
T ss_pred HHHHHHHHhcc
Confidence 66666666543
No 18
>PF12791 RsgI_N: Anti-sigma factor N-terminus; InterPro: IPR024449 The heat shock genes in Bacillus subtilis can be classified into several groups according to their regulation [], and the sigma gene, sigI, of Bacillus subtilis belongs to the group IV heat-shock response genes and has many orthologues in the bacterial phylum Firmicutes []. Regulation of sigma factor I is carried out by RsgI from the same operon. This entry represents the N-terminal cytoplasmic portion of RsgI ('upstream' of the single transmembrane helix) which has been shown to interact directly with Sigma-I [].
Probab=58.50 E-value=10 Score=26.44 Aligned_cols=36 Identities=19% Similarity=0.308 Sum_probs=27.1
Q ss_pred eEEEEEEEeeCCCEEEecccCccCCCCeeeeceEEEEe
Q 025903 137 AFAVVQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLG 174 (246)
Q Consensus 137 MYAIVQYKV~~GD~I~VerLk~~evGd~I~LdkVLlVg 174 (246)
.|||| .=..|+++.|.+-.+.++|++|.|+..-...
T Consensus 6 ~~aiV--lT~dGeF~~ik~~~~~~vG~eI~~~~~~~~~ 41 (56)
T PF12791_consen 6 KYAIV--LTPDGEFIKIKRKPGMEVGQEIEFDEKDIIN 41 (56)
T ss_pred CEEEE--EcCCCcEEEEeCCCCCcccCEEEEechhhcc
Confidence 34555 3347999999988889999999998755443
No 19
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=56.51 E-value=5.7 Score=42.09 Aligned_cols=9 Identities=11% Similarity=0.335 Sum_probs=4.5
Q ss_pred ccccccccC
Q 025903 81 EETADESYE 89 (246)
Q Consensus 81 ~~~~~~~~~ 89 (246)
|+|.+.+|+
T Consensus 362 DdD~~~dWN 370 (885)
T KOG2023|consen 362 DDDAFSDWN 370 (885)
T ss_pred ccccccccc
Confidence 444555553
No 20
>PF05285 SDA1: SDA1; InterPro: IPR007949 This domain consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus [].
Probab=56.21 E-value=6.1 Score=37.28 Aligned_cols=20 Identities=30% Similarity=0.169 Sum_probs=16.0
Q ss_pred hhHHHHHHHhhhhhhccCCC
Q 025903 4 RRCLHVLSRHAAALLSLKTP 23 (246)
Q Consensus 4 ~r~~~~~~~~~~~~~~~~~~ 23 (246)
-|-|..|-|.+.|-|-++..
T Consensus 24 arsli~l~Rev~P~lL~kkd 43 (324)
T PF05285_consen 24 ARSLINLFREVNPELLHKKD 43 (324)
T ss_pred HHHHHHHHHHHCHHhcCchh
Confidence 46688899999998877765
No 21
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=55.89 E-value=14 Score=38.34 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=13.1
Q ss_pred eceEEEEecCCceEecCCccCCcEEEEEE
Q 025903 167 LNKVLLLGSQHQTIIGRPMVPDAAVHAVV 195 (246)
Q Consensus 167 LdkVLlVgs~d~t~IG~P~L~gA~VkAtV 195 (246)
|.++-+-.+++ .|+.+.-+++|.-
T Consensus 531 lqrlrlpssdn-----eplaep~~~kase 554 (990)
T KOG1819|consen 531 LQRLRLPSSDN-----EPLAEPKKCKASE 554 (990)
T ss_pred HHHhcCCcccC-----ccccCcccccchH
Confidence 44444444443 4667766776653
No 22
>PF05086 Dicty_REP: Dictyostelium (Slime Mold) REP protein; InterPro: IPR007778 This family consists of REP proteins from a number of Dictyostelium species (Slime molds). REP protein is probably involved in transcription regulation and control of DNA replication, specifically the amplification of plasmid at low copy numbers. The formation of homomultimers may be required for their regulatory activity [].
Probab=55.27 E-value=5 Score=42.83 Aligned_cols=12 Identities=42% Similarity=0.736 Sum_probs=4.9
Q ss_pred eeecCCCCCCCC
Q 025903 60 HFSSNKNDDEGE 71 (246)
Q Consensus 60 ~~~~~~~~~~~~ 71 (246)
+|.+...+|.+|
T Consensus 884 ~f~~~~~~d~dE 895 (911)
T PF05086_consen 884 QFQSNGDEDTDE 895 (911)
T ss_pred HHHhcCCccccc
Confidence 344444443333
No 23
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=54.83 E-value=7.9 Score=40.10 Aligned_cols=17 Identities=18% Similarity=0.524 Sum_probs=13.2
Q ss_pred EEEEeeCCCEEEecccC
Q 025903 141 VQFKVSNGDSIFTERLK 157 (246)
Q Consensus 141 VQYKV~~GD~I~VerLk 157 (246)
++=-+..|++++|-.|.
T Consensus 285 ~~en~~~~~tVFvRNL~ 301 (678)
T KOG0127|consen 285 TRENITEGKTVFVRNLP 301 (678)
T ss_pred ccccccccceEEEecCC
Confidence 35667788999998876
No 24
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=53.02 E-value=5.9 Score=41.96 Aligned_cols=17 Identities=29% Similarity=0.472 Sum_probs=11.3
Q ss_pred cCHHHHHHHHHhcceEE
Q 025903 104 YTLEEKEAEAAEIGYKV 120 (246)
Q Consensus 104 ~~~~e~~~ea~~i~~~v 120 (246)
||.|++.+-..+..|++
T Consensus 424 l~k~q~k~y~de~dyr~ 440 (763)
T TIGR00993 424 LSKEQRKAYLEEYDYRV 440 (763)
T ss_pred HhHHHHHHHHHHHHHHH
Confidence 56677776666666654
No 25
>PF05285 SDA1: SDA1; InterPro: IPR007949 This domain consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus [].
Probab=51.85 E-value=12 Score=35.26 Aligned_cols=8 Identities=25% Similarity=0.335 Sum_probs=3.2
Q ss_pred Hhhhhhhc
Q 025903 12 RHAAALLS 19 (246)
Q Consensus 12 ~~~~~~~~ 19 (246)
|-++.|+-
T Consensus 25 rsli~l~R 32 (324)
T PF05285_consen 25 RSLINLFR 32 (324)
T ss_pred HHHHHHHH
Confidence 33444333
No 26
>KOG1686 consensus Mitochondrial/chloroplast ribosomal L21 protein [Translation, ribosomal structure and biogenesis]
Probab=50.82 E-value=7.5 Score=33.77 Aligned_cols=56 Identities=34% Similarity=0.547 Sum_probs=40.3
Q ss_pred ccccCCceEEEE-----EEEeeCCCEEEec---ccCccCCCCeeeeceEEEEecCCceEecCCcc
Q 025903 130 VFKKYEPAFAVV-----QFKVSNGDSIFTE---RLKFCEVNDKLILNKVLLLGSQHQTIIGRPMV 186 (246)
Q Consensus 130 ~~k~~~~MYAIV-----QYKV~~GD~I~Ve---rLk~~evGd~I~LdkVLlVgs~d~t~IG~P~L 186 (246)
+--.|...|+++ |+|+..-|..... +|. ...++-|++.++++++.++++.+|.|.+
T Consensus 88 Vv~e~g~~~kvvhfk~k~~k~tr~~~~~~qe~t~Lr-It~it~ie~e~~~~v~~~nf~~vgk~~l 151 (151)
T KOG1686|consen 88 VVEEYGLLFKVVHFKSKQWKVTRRDLGHRQEATELR-ITCITGIELEKVLLVGAPNFTAVGKPLL 151 (151)
T ss_pred EeeeccccccEEEEEecchhhhhhhhcccCcccEEE-EeeeeeeeeccceeccCccceeeccccC
Confidence 334556666666 5667766666554 232 3468899999999999999999999864
No 27
>PF13324 GCIP: Grap2 and cyclin-D-interacting; PDB: 3AY5_A.
Probab=48.78 E-value=9.1 Score=34.79 Aligned_cols=7 Identities=43% Similarity=0.387 Sum_probs=3.1
Q ss_pred cCHHHHH
Q 025903 104 YTLEEKE 110 (246)
Q Consensus 104 ~~~~e~~ 110 (246)
+|++|+.
T Consensus 179 ~seee~~ 185 (275)
T PF13324_consen 179 LSEEEME 185 (275)
T ss_dssp --HHHHH
T ss_pred CCHHHHH
Confidence 6777653
No 28
>PHA03209 serine/threonine kinase US3; Provisional
Probab=47.89 E-value=29 Score=31.51 Aligned_cols=20 Identities=25% Similarity=0.469 Sum_probs=15.0
Q ss_pred HHHHHHHhcceEEeccCccc
Q 025903 108 EKEAEAAEIGYKVLGPLRKS 127 (246)
Q Consensus 108 e~~~ea~~i~~~v~~~l~~~ 127 (246)
....-....||.+...|...
T Consensus 58 ~~~~~~~~~~y~~~~~lg~G 77 (357)
T PHA03209 58 KAREVVASLGYTVIKTLTPG 77 (357)
T ss_pred hhhhhhhhcCcEEEEEecCC
Confidence 33455667899999999877
No 29
>PF11421 Synthase_beta: ATP synthase F1 beta subunit; InterPro: IPR020971 F-type ATPases have 2 components, CF1 - the catalytic core - and CF0 - the membrane proton channel. CF1 has five subunits: alpha3, beta3, gamma1, delta1, epsilon1. CF0 has three main subunits: a, b and c. This entry represents the beta subunit of the F1 component. The NMR solution structure of the protein in SDS micelles was found to contain two helices, an N-terminal amphipathic alpha-helix and a C-terminal alpha-helix separated by a large unstructured internal domain. The N-terminal alpha-helix is the Tom20 receptor binding site whereas the C-terminal alpha-helix is located upstream of the mitochondrial processing peptidase cleavage site [].; GO: 0005524 ATP binding, 0016887 ATPase activity, 0006200 ATP catabolic process, 0006754 ATP biosynthetic process, 0000275 mitochondrial proton-transporting ATP synthase complex, catalytic core F(1); PDB: 1PYV_A.
Probab=47.11 E-value=17 Score=26.25 Aligned_cols=16 Identities=44% Similarity=0.526 Sum_probs=11.3
Q ss_pred CchhhHHHHHHHhhhh
Q 025903 1 MAHRRCLHVLSRHAAA 16 (246)
Q Consensus 1 ma~~r~~~~~~~~~~~ 16 (246)
||+||-|-.|+|.+.-
T Consensus 1 MASRR~lSSlLRSssr 16 (49)
T PF11421_consen 1 MASRRLLSSLLRSSSR 16 (49)
T ss_dssp ---SHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHhc
Confidence 9999999999987665
No 30
>PF12720 DUF3807: Protein of unknown function (DUF3807); InterPro: IPR024526 This is a family of conserved fungal proteins of unknown function.
Probab=46.52 E-value=18 Score=31.73 Aligned_cols=10 Identities=30% Similarity=0.235 Sum_probs=7.9
Q ss_pred CCCccCHHHH
Q 025903 100 LGREYTLEEK 109 (246)
Q Consensus 100 ~~~~~~~~e~ 109 (246)
.||-||+|+.
T Consensus 46 VKRTLTDEQI 55 (172)
T PF12720_consen 46 VKRTLTDEQI 55 (172)
T ss_pred CcccccHHHH
Confidence 4788999873
No 31
>PF04050 Upf2: Up-frameshift suppressor 2 ; InterPro: IPR007193 This entry represents Up-frameshift suppressor 2 (also known as Nonsense-mediated mRNA decay protein 2). Transcripts harbouring premature signals for translation termination are recognised and rapidly degraded by eukaryotic cells through a pathway known as nonsense-mediated mRNA decay. In Saccharomyces cerevisiae, three trans-acting factors (Upf1 to Upf3) are required for nonsense-mediated mRNA decay [].; PDB: 2WJV_D.
Probab=44.64 E-value=7.3 Score=33.35 Aligned_cols=15 Identities=20% Similarity=0.259 Sum_probs=5.6
Q ss_pred CCCeeeeceEEEEecCC
Q 025903 161 VNDKLILNKVLLLGSQH 177 (246)
Q Consensus 161 vGd~I~LdkVLlVgs~d 177 (246)
.|.+|.| .||...++
T Consensus 117 ~~~~v~F--~lLtKkGn 131 (170)
T PF04050_consen 117 SGGKVAF--TLLTKKGN 131 (170)
T ss_dssp ---EEEE--EEEEEETT
T ss_pred CCCeEEE--EEEEEcCC
Confidence 4455555 44444333
No 32
>KOG2239 consensus Transcription factor containing NAC and TS-N domains [Transcription]
Probab=40.51 E-value=66 Score=29.44 Aligned_cols=45 Identities=13% Similarity=0.242 Sum_probs=27.7
Q ss_pred HHHHHHHHHhcceEEeccCcccc--cccccCCceEEEEE---EEeeCCCEEEe
Q 025903 106 LEEKEAEAAEIGYKVLGPLRKSD--RVFKKYEPAFAVVQ---FKVSNGDSIFT 153 (246)
Q Consensus 106 ~~e~~~ea~~i~~~v~~~l~~~~--~~~k~~~~MYAIVQ---YKV~~GD~I~V 153 (246)
+.-....+...|+|-+ .+-. -.+|..|-+|.|-+ ||.--+|.|.|
T Consensus 66 ekKark~m~KLGlk~v---~gV~RVti~ksKNilfvI~kPdVyKsp~sdtYii 115 (209)
T KOG2239|consen 66 EKKARKAMLKLGLKQV---TGVTRVTIRKSKNILFVITKPDVYKSPASDTYII 115 (209)
T ss_pred HHHHHHHHHhcCCccc---cceeEEEEEecccEEEEecCCceeccCCCceEEE
Confidence 3333456677786644 3333 23667777888776 88777777655
No 33
>COG3168 PilP Tfp pilus assembly protein PilP [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=40.15 E-value=41 Score=29.81 Aligned_cols=48 Identities=17% Similarity=0.461 Sum_probs=33.2
Q ss_pred eEEeccCcccccccccCCceEEEEE-----EEeeCCCEEEecccCccCCC-CeeeeceEEE
Q 025903 118 YKVLGPLRKSDRVFKKYEPAFAVVQ-----FKVSNGDSIFTERLKFCEVN-DKLILNKVLL 172 (246)
Q Consensus 118 ~~v~~~l~~~~~~~k~~~~MYAIVQ-----YKV~~GD~I~VerLk~~evG-d~I~LdkVLl 172 (246)
++.+|-|+.+ ...+|+|| |+|..|++|-.+.=+-..++ +.|.|+.++-
T Consensus 98 ~rlvGtm~~g-------~~~~A~i~~~~~v~~V~vG~YlGqN~GrV~rI~d~~i~l~Elv~ 151 (170)
T COG3168 98 FRLVGTLKSG-------QGVSALIEAPGGVYRVRVGQYLGQNYGRVVRITDDSIVLNELVP 151 (170)
T ss_pred eeeEEEecCC-------CceEEEEEcCCceEEEeeccEeeccCceEEEecCCeEEeeeecc
Confidence 7888877776 67889997 99999999976633222333 4566655443
No 34
>PF04351 PilP: Pilus assembly protein, PilP; InterPro: IPR007446 The PilP family are periplasmic proteins involved in the biogenesis of type IV pili [].; PDB: 2Y4Y_B 2Y4X_A 2IVW_A 2LC4_A.
Probab=39.52 E-value=28 Score=29.14 Aligned_cols=30 Identities=33% Similarity=0.563 Sum_probs=23.8
Q ss_pred eEEeccCcccccccccCCceEEEEE------EEeeCCCEEEec
Q 025903 118 YKVLGPLRKSDRVFKKYEPAFAVVQ------FKVSNGDSIFTE 154 (246)
Q Consensus 118 ~~v~~~l~~~~~~~k~~~~MYAIVQ------YKV~~GD~I~Ve 154 (246)
++.+|=|... +.++|+|| |+|..||.|=.+
T Consensus 79 LklvG~l~~~-------~~~~ALv~~pdg~v~~V~~G~yiG~n 114 (149)
T PF04351_consen 79 LKLVGTLSQG-------GQPWALVQDPDGKVYRVKVGDYIGQN 114 (149)
T ss_dssp EEEEEEEEET-------TEEEEEEEE-TTEEEEEETTEEETTT
T ss_pred eEEEEEEeeC-------CEEEEEEEeCCCCEEEecCCCEeccC
Confidence 5777766544 78899997 999999998554
No 35
>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=39.25 E-value=36 Score=36.73 Aligned_cols=71 Identities=24% Similarity=0.190 Sum_probs=52.0
Q ss_pred CCCEEEecccCccCCCCeeeeceEEEEecCCceEecCCccCCcEEEEEEEeecCCceeEEEEecCCCCcccccCccCcce
Q 025903 147 NGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELT 226 (246)
Q Consensus 147 ~GD~I~VerLk~~evGd~I~LdkVLlVgs~d~t~IG~P~L~gA~VkAtVlEh~KgkKViIFK~KRRK~yrRk~GHRQ~yT 226 (246)
.|=+|..||- .++||.|++..+- | +|...+|.||.++.+.++.|+|=-.-==.+.-.-+-||..+|
T Consensus 651 SGlIiL~Erp--vkvGD~It~g~~~----------G--~V~~I~vRAT~I~~fd~~~vIVPNs~fI~~qV~NWs~~~~~~ 716 (835)
T COG3264 651 SGLIILFERP--VKVGDTVTIGTVS----------G--TVRKISVRATTIRTFDRKEVIVPNSAFITEQVINWSLRDTTT 716 (835)
T ss_pred hhhhhheecC--cccCCEEEECCce----------E--EEEEEEeeEEEEEeCCCCeEEeccHHHHhhheeeeeccCceE
Confidence 4667778863 5899999987632 2 477889999999999999998632211123344568999999
Q ss_pred EEEEc
Q 025903 227 KLRIV 231 (246)
Q Consensus 227 rIRI~ 231 (246)
|+.|.
T Consensus 717 R~~i~ 721 (835)
T COG3264 717 RLVIP 721 (835)
T ss_pred EEEEE
Confidence 99985
No 36
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=38.57 E-value=47 Score=34.72 Aligned_cols=6 Identities=50% Similarity=0.180 Sum_probs=2.7
Q ss_pred cCHHHH
Q 025903 104 YTLEEK 109 (246)
Q Consensus 104 ~~~~e~ 109 (246)
-|+||+
T Consensus 450 gtdeeq 455 (990)
T KOG1819|consen 450 GTDEEQ 455 (990)
T ss_pred cchHHH
Confidence 344444
No 37
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=37.84 E-value=20 Score=37.43 Aligned_cols=7 Identities=14% Similarity=0.430 Sum_probs=3.2
Q ss_pred ceEEEEE
Q 025903 136 PAFAVVQ 142 (246)
Q Consensus 136 ~MYAIVQ 142 (246)
.+|-++|
T Consensus 457 ~IYLti~ 463 (739)
T KOG2140|consen 457 TIYLTIQ 463 (739)
T ss_pred hheeeee
Confidence 3444443
No 38
>TIGR03779 Bac_Flav_CT_M Bacteroides conjugative transposon TraM protein. Members of this protein family are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage.
Probab=37.65 E-value=4e+02 Score=26.66 Aligned_cols=102 Identities=13% Similarity=0.135 Sum_probs=67.0
Q ss_pred cccccCCCCccCHHHHHHHH-HhcceEEeccCcccccccccCCceEEEEE--EEeeCCCEEEecccCccCCCCeeeeceE
Q 025903 94 GDTVPDLGREYTLEEKEAEA-AEIGYKVLGPLRKSDRVFKKYEPAFAVVQ--FKVSNGDSIFTERLKFCEVNDKLILNKV 170 (246)
Q Consensus 94 ~~~~~~~~~~~~~~e~~~ea-~~i~~~v~~~l~~~~~~~k~~~~MYAIVQ--YKV~~GD~I~VerLk~~evGd~I~LdkV 170 (246)
..+|+.+..+.++.+-.++. +..-+.-+-...... ....|.+.|+|. -+|..|+.|.+-.|.++.+|+.+.=.
T Consensus 216 ~~~VSsL~qp~sds~fi~~~~~~rn~gFnT~~~~~~--~~~~n~I~A~V~~~qtv~~G~~vrlRLle~~~v~~~~ipk-- 291 (410)
T TIGR03779 216 EKAVSSLQQPMSDAEFVAEYSKPRNRGFNTAVGSGE--VSERNTIRACVHETQTVVDGSAVKLRLLEPIQAGDLVIPK-- 291 (410)
T ss_pred ccccccCCCCCChHHHHHHhhccccCceeccccccc--ccCCCceEEEEcCceEEecCCEEEEEEcCceeeCCEEecC--
Confidence 34667778888888877776 444444443322221 235688999994 89999999999888888888876433
Q ss_pred EEEecCCceEecCCccCCcEEEEEEEeecCCceeE
Q 025903 171 LLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVI 205 (246)
Q Consensus 171 LlVgs~d~t~IG~P~L~gA~VkAtVlEh~KgkKVi 205 (246)
+..++|.--+.+-+|..+|...--+-.|+
T Consensus 292 ------gt~l~g~~~~~g~R~~i~I~si~~~g~ii 320 (410)
T TIGR03779 292 ------GTVLYGTAKIQGERLDIKISSIEYNGTIL 320 (410)
T ss_pred ------CCEEEEEeeeccceEEEEEEEEEECCEEE
Confidence 33445555567777777776554444443
No 39
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=37.28 E-value=21 Score=37.80 Aligned_cols=11 Identities=9% Similarity=-0.034 Sum_probs=6.9
Q ss_pred ccCCCCCCccc
Q 025903 46 ISSTLGPTNWS 56 (246)
Q Consensus 46 ~~~~~~~~~~~ 56 (246)
+..+..++-|+
T Consensus 489 NrRP~YyGTWr 499 (811)
T KOG4364|consen 489 NRRPGYYGTWR 499 (811)
T ss_pred ccCCccccccc
Confidence 34566667777
No 40
>PHA03346 US22 family homolog; Provisional
Probab=34.48 E-value=21 Score=36.31 Aligned_cols=13 Identities=15% Similarity=0.312 Sum_probs=6.5
Q ss_pred CCccc---ccceeecC
Q 025903 52 PTNWS---HYRHFSSN 64 (246)
Q Consensus 52 ~~~~~---~~~~~~~~ 64 (246)
..+|+ +++-|..+
T Consensus 377 ~~~~~~~~~~~~~~~~ 392 (520)
T PHA03346 377 FALWHARVLRGEFAER 392 (520)
T ss_pred HHHHHHHHHhcchhhh
Confidence 34565 44455553
No 41
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=34.37 E-value=30 Score=35.63 Aligned_cols=6 Identities=33% Similarity=0.274 Sum_probs=2.7
Q ss_pred CCCCcc
Q 025903 35 KGLTPF 40 (246)
Q Consensus 35 ~~~~~~ 40 (246)
.-|+||
T Consensus 171 gmLlPC 176 (615)
T KOG3540|consen 171 GMLLPC 176 (615)
T ss_pred cceecc
Confidence 334444
No 42
>PHA03211 serine/threonine kinase US3; Provisional
Probab=33.63 E-value=90 Score=30.48 Aligned_cols=11 Identities=27% Similarity=-0.019 Sum_probs=6.0
Q ss_pred CCCCccCHHHH
Q 025903 99 DLGREYTLEEK 109 (246)
Q Consensus 99 ~~~~~~~~~e~ 109 (246)
.+..++|.++.
T Consensus 131 ~~~~~~t~~~l 141 (461)
T PHA03211 131 APPGGLTPEEL 141 (461)
T ss_pred CCCCCCChhhh
Confidence 44455666664
No 43
>PF04050 Upf2: Up-frameshift suppressor 2 ; InterPro: IPR007193 This entry represents Up-frameshift suppressor 2 (also known as Nonsense-mediated mRNA decay protein 2). Transcripts harbouring premature signals for translation termination are recognised and rapidly degraded by eukaryotic cells through a pathway known as nonsense-mediated mRNA decay. In Saccharomyces cerevisiae, three trans-acting factors (Upf1 to Upf3) are required for nonsense-mediated mRNA decay [].; PDB: 2WJV_D.
Probab=33.37 E-value=22 Score=30.41 Aligned_cols=12 Identities=33% Similarity=0.709 Sum_probs=6.3
Q ss_pred cCccCcceEEEE
Q 025903 219 KGHRQELTKLRI 230 (246)
Q Consensus 219 ~GHRQ~yTrIRI 230 (246)
+|+||.+-.|.|
T Consensus 129 kGnK~q~k~l~v 140 (170)
T PF04050_consen 129 KGNKQQTKELNV 140 (170)
T ss_dssp ETTEEEEEEEEE
T ss_pred cCCCCCCeEEec
Confidence 455555544444
No 44
>PF02563 Poly_export: Polysaccharide biosynthesis/export protein; InterPro: IPR003715 The extracellular polysaccharide colanic acid (CA) is produced by species of the family Enterobacteriaceae. In Escherichia coli (strain K12) the CA cluster comprises 19 genes. The wzx gene encodes a protein with multiple transmembrane segments that may function in export of the CA repeat unit from the cytoplasm into the periplasm in a process analogous to O-unit export. The CA gene clusters may be involved in the export of polysaccharide from the cell [].; GO: 0015159 polysaccharide transmembrane transporter activity, 0015774 polysaccharide transport, 0016020 membrane; PDB: 2W8I_E 2W8H_E 2J58_D.
Probab=32.66 E-value=26 Score=26.19 Aligned_cols=42 Identities=14% Similarity=0.300 Sum_probs=20.8
Q ss_pred EEEeeCCCEEEecccCccCCCCeeeeceEEEEecCCceEecCCccCCcEE
Q 025903 142 QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAV 191 (246)
Q Consensus 142 QYKV~~GD~I~VerLk~~evGd~I~LdkVLlVgs~d~t~IG~P~L~gA~V 191 (246)
.|++.+||.|.|.-....+ |+.-..|+.++.+ --|++....|
T Consensus 10 ~y~l~pGD~l~i~v~~~~~------l~~~~~V~~dG~I--~lP~iG~v~v 51 (82)
T PF02563_consen 10 EYRLGPGDVLRISVFGWPE------LSGEYTVDPDGTI--SLPLIGPVKV 51 (82)
T ss_dssp -----TT-EEEEEETT-HH------HCCSEE--TTSEE--EETTTEEEE-
T ss_pred CCEECCCCEEEEEEecCCC------cccceEECCCCcE--eecccceEEE
Confidence 4899999999997544212 5556777766654 3477766555
No 45
>PF13079 DUF3916: Protein of unknown function (DUF3916)
Probab=32.10 E-value=37 Score=29.57 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=19.3
Q ss_pred hhhHHHHHHHhhhhhhccCCC
Q 025903 3 HRRCLHVLSRHAAALLSLKTP 23 (246)
Q Consensus 3 ~~r~~~~~~~~~~~~~~~~~~ 23 (246)
+|.|+|+|.++|.-++..+|.
T Consensus 43 kr~c~Q~LIn~a~~Li~~kp~ 63 (153)
T PF13079_consen 43 KRLCIQTLINAAEHLIQAKPD 63 (153)
T ss_pred HHHHHHHHHHHHHHHHhCCcC
Confidence 588999999999999999985
No 46
>PF08920 SF3b1: Splicing factor 3B subunit 1; InterPro: IPR015016 This group of proteins consists of several eukaryotic splicing factor 3B subunit 1 proteins, which associate with p14 through a C terminus beta-strand that interacts with beta-3 of the p14 RNA recognition motif (RRM) beta-sheet, which is in turn connected to an alpha-helix by a loop that makes extensive contacts with both the shorter C-terminal helix and RRM of p14. This subunit is required for 'A' splicing complex assembly (formed by the stable binding of U2 snRNP to the branchpoint sequence in pre-mRNA) and 'E' splicing complex assembly []. ; PDB: 2FHO_A 3LQV_P 2PEH_D 2F9J_P 2F9D_Q.
Probab=31.07 E-value=31 Score=29.53 Aligned_cols=41 Identities=27% Similarity=0.291 Sum_probs=17.9
Q ss_pred CCCCccCHHHHHHHHHhcceEEeccCcccccccccCCceEE
Q 025903 99 DLGREYTLEEKEAEAAEIGYKVLGPLRKSDRVFKKYEPAFA 139 (246)
Q Consensus 99 ~~~~~~~~~e~~~ea~~i~~~v~~~l~~~~~~~k~~~~MYA 139 (246)
...|.||+||-.+..-.-||||+.|=.+=..+.++-..++|
T Consensus 82 ~RNrpLTDEELD~mLPseGYkIl~PP~gY~Pirtp~rkl~a 122 (144)
T PF08920_consen 82 ERNRPLTDEELDAMLPSEGYKILEPPAGYEPIRTPARKLMA 122 (144)
T ss_dssp HCTS-S-HHHHHHTS--SSEEE----TT-------------
T ss_pred hccCcCCHHHHHHhCCcCCcEEcCCCCCCccccCccccccc
Confidence 47889999999999988999999987776655555444443
No 47
>KOG4264 consensus Nucleo-cytoplasmic protein MLN51 [General function prediction only]
Probab=30.91 E-value=24 Score=36.66 Aligned_cols=6 Identities=67% Similarity=0.866 Sum_probs=3.4
Q ss_pred CchhhH
Q 025903 1 MAHRRC 6 (246)
Q Consensus 1 ma~~r~ 6 (246)
||.||-
T Consensus 1 MAdrr~ 6 (694)
T KOG4264|consen 1 MADRRM 6 (694)
T ss_pred Ccchhc
Confidence 666553
No 48
>PRK12766 50S ribosomal protein L32e; Provisional
Probab=29.78 E-value=36 Score=31.48 Aligned_cols=17 Identities=18% Similarity=0.075 Sum_probs=10.9
Q ss_pred cccCCCCccCHHHHHHH
Q 025903 96 TVPDLGREYTLEEKEAE 112 (246)
Q Consensus 96 ~~~~~~~~~~~~e~~~e 112 (246)
-.+....+|.+|++...
T Consensus 92 ~~~~~~~~l~~~~~rll 108 (232)
T PRK12766 92 GLTEKTPELSDEEARLL 108 (232)
T ss_pred ccccCCCCCCHHHHHHH
Confidence 45566677777776543
No 49
>PF12508 DUF3714: Protein of unknown function (DUF3714) ; InterPro: IPR022187 Proteins in this entry are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage.
Probab=29.13 E-value=3.8e+02 Score=24.08 Aligned_cols=66 Identities=14% Similarity=0.172 Sum_probs=47.9
Q ss_pred ccCCceEEEEE--EEeeCCCEEEecccCccCCCCeeeeceEEEEecCCceEecCCccCCcEEEEEEEeecCCceeE
Q 025903 132 KKYEPAFAVVQ--FKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVI 205 (246)
Q Consensus 132 k~~~~MYAIVQ--YKV~~GD~I~VerLk~~evGd~I~LdkVLlVgs~d~t~IG~P~L~gA~VkAtVlEh~KgkKVi 205 (246)
...+.+.|+|. -+|..|..|.+-.|.++.+|.. ++ -.+..+.|..-+.+-+|..+|....-+.+|+
T Consensus 50 ~~~n~I~A~V~~~qtv~~Gs~vrlRLle~i~i~g~------~I--Pkgt~l~G~~~~~~~Rl~i~I~SI~~~~~Ii 117 (200)
T PF12508_consen 50 TEKNTIRAVVDGTQTVVDGSRVRLRLLEDIQIGGI------LI--PKGTYLYGVASFQGQRLLITITSIEYGGNII 117 (200)
T ss_pred CCCCeEEEEEecceEEeCCCEEEEEEcCceEECCE------Ee--CCCCEEEEEEeeeccEEEEEEEEEEECCEEE
Confidence 35678999994 7999999999977766555443 22 3455677877888888888887666665554
No 50
>COG5137 Histone chaperone involved in gene silencing [Transcription / Chromatin structure and dynamics]
Probab=27.55 E-value=26 Score=32.80 Aligned_cols=15 Identities=47% Similarity=0.479 Sum_probs=7.9
Q ss_pred CCCCccCHHHHHHHHH
Q 025903 99 DLGREYTLEEKEAEAA 114 (246)
Q Consensus 99 ~~~~~~~~~e~~~ea~ 114 (246)
...+++..++ .+||.
T Consensus 203 Eg~~e~~eee-eEE~e 217 (279)
T COG5137 203 EGNRELNEEE-EEEAE 217 (279)
T ss_pred ccchhhhhhh-hhhhc
Confidence 3346666555 45554
No 51
>PRK09570 rpoH DNA-directed RNA polymerase subunit H; Reviewed
Probab=26.83 E-value=82 Score=24.61 Aligned_cols=57 Identities=23% Similarity=0.176 Sum_probs=38.6
Q ss_pred ccCHHHHHHHHHhcceEEeccCcccccccccCCceEEEEE-EEeeCCCEEEecccCccCCCCeeeec
Q 025903 103 EYTLEEKEAEAAEIGYKVLGPLRKSDRVFKKYEPAFAVVQ-FKVSNGDSIFTERLKFCEVNDKLILN 168 (246)
Q Consensus 103 ~~~~~e~~~ea~~i~~~v~~~l~~~~~~~k~~~~MYAIVQ-YKV~~GD~I~VerLk~~evGd~I~Ld 168 (246)
.+|+||+++..+..+.+.. +|+... .++ .|++ |-..+||+|.|-|-. -..|.-|..-
T Consensus 17 iLs~eE~~~lL~~y~i~~~-qLP~I~--~~D-----Pv~r~~g~k~GdVvkI~R~S-~taG~~v~YR 74 (79)
T PRK09570 17 ILSEEEAKKLLKEYGIKPE-QLPKIK--ASD-----PVVKAIGAKPGDVIKIVRKS-PTAGEAVYYR 74 (79)
T ss_pred ECCHHHHHHHHHHcCCCHH-HCCcee--ccC-----hhhhhcCCCCCCEEEEEECC-CCCCccEEEE
Confidence 4789999888888775543 244441 111 3444 689999999998876 3678877664
No 52
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=26.67 E-value=29 Score=38.33 Aligned_cols=14 Identities=7% Similarity=0.368 Sum_probs=7.3
Q ss_pred HhcceEEeccCccc
Q 025903 114 AEIGYKVLGPLRKS 127 (246)
Q Consensus 114 ~~i~~~v~~~l~~~ 127 (246)
|++|=.+++.++.-
T Consensus 372 q~l~p~lI~RfkER 385 (1233)
T KOG1824|consen 372 QTLGPALISRFKER 385 (1233)
T ss_pred HHhCHHHHHHHHHH
Confidence 45555555555544
No 53
>PF11521 TFIIE-A_C-term: C-terminal general transcription factor TFIIE alpha; InterPro: IPR021600 TFIIE is compiled of two subunits, alpha and beta. This family of proteins are the C-terminal domain of the alpha subunit of the protein which is the largest subunit and contains several functional domains which are important for basal transcription and cell growth. The C-terminal end of the protein binds directly to the amino-terminal PH domain of p62/Tfb1 (of IIH) which is involved in the recruitment of the general transcription factor IIH to the transcription preinitiation complex. P53 competes for the same binding site as TFIIE alpha which shows their structural similarity. Like p53, TFIIE alpha 336-439 can activate transcription in vivo []. ; PDB: 2RNR_A 2RNQ_A 2JTX_A.
Probab=26.09 E-value=11 Score=29.84 Aligned_cols=11 Identities=55% Similarity=0.444 Sum_probs=5.2
Q ss_pred ccCHHHHHHHH
Q 025903 103 EYTLEEKEAEA 113 (246)
Q Consensus 103 ~~~~~e~~~ea 113 (246)
..|++||++-.
T Consensus 64 qMT~~EKEaYi 74 (86)
T PF11521_consen 64 QMTPEEKEAYI 74 (86)
T ss_dssp HS-HHHHHHHH
T ss_pred HcCHHHHHHHH
Confidence 34566665543
No 54
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=25.54 E-value=75 Score=23.30 Aligned_cols=22 Identities=27% Similarity=0.281 Sum_probs=15.1
Q ss_pred EeeCCCEEEecccCccCCCCee
Q 025903 144 KVSNGDSIFTERLKFCEVNDKL 165 (246)
Q Consensus 144 KV~~GD~I~VerLk~~evGd~I 165 (246)
.+..||++.+..++.+.+||+|
T Consensus 60 ~~~aGdI~~i~gl~~~~~Gdtl 81 (83)
T cd04092 60 SLSAGNIGVITGLKQTRTGDTL 81 (83)
T ss_pred eeCCCCEEEEECCCCcccCCEE
Confidence 4567777777777666677765
No 55
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.52 E-value=42 Score=35.48 Aligned_cols=20 Identities=50% Similarity=0.639 Sum_probs=9.5
Q ss_pred CCCCCCCcccccccccccCC
Q 025903 71 EDVDEDEDEDEETADESYEG 90 (246)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~ 90 (246)
+.+||++|.|+|+.++|++.
T Consensus 149 ~~~~~eed~~~e~~~e~de~ 168 (704)
T KOG2153|consen 149 ESDDDEEDLDEEDSDEDDET 168 (704)
T ss_pred ccccchhcccchhccccccc
Confidence 33344445555555555443
No 56
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=24.81 E-value=98 Score=32.48 Aligned_cols=9 Identities=33% Similarity=0.722 Sum_probs=5.3
Q ss_pred cccccCccC
Q 025903 215 YRRTKGHRQ 223 (246)
Q Consensus 215 yrRk~GHRQ 223 (246)
.++..|||.
T Consensus 390 ~Kk~~gkrN 398 (678)
T KOG0127|consen 390 RKKPKGKRN 398 (678)
T ss_pred hhccCCccc
Confidence 344567773
No 57
>KOG0262 consensus RNA polymerase I, large subunit [Transcription]
Probab=24.27 E-value=41 Score=38.21 Aligned_cols=12 Identities=25% Similarity=0.260 Sum_probs=6.9
Q ss_pred EEeeCCCEEEec
Q 025903 143 FKVSNGDSIFTE 154 (246)
Q Consensus 143 YKV~~GD~I~Ve 154 (246)
|-.+.|-+..|+
T Consensus 1435 fd~~~~~wcev~ 1446 (1640)
T KOG0262|consen 1435 FDKESGKWCEVE 1446 (1640)
T ss_pred cccccCcEEEEE
Confidence 555556555554
No 58
>PHA02664 hypothetical protein; Provisional
Probab=23.95 E-value=65 Score=31.96 Aligned_cols=14 Identities=43% Similarity=0.461 Sum_probs=8.4
Q ss_pred cCHHHHHHHHHhcc
Q 025903 104 YTLEEKEAEAAEIG 117 (246)
Q Consensus 104 ~~~~e~~~ea~~i~ 117 (246)
.-+||.++|++-+|
T Consensus 513 ~ieee~~ee~~vl~ 526 (534)
T PHA02664 513 AIEEEEEEERAVLG 526 (534)
T ss_pred hhhHHHHHHHHHHH
Confidence 34566667776554
No 59
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=23.79 E-value=79 Score=23.19 Aligned_cols=21 Identities=14% Similarity=0.289 Sum_probs=14.4
Q ss_pred eeCCCEEEecccCccCCCCee
Q 025903 145 VSNGDSIFTERLKFCEVNDKL 165 (246)
Q Consensus 145 V~~GD~I~VerLk~~evGd~I 165 (246)
+..||+..+..++.+.+||++
T Consensus 64 ~~aG~I~~i~gl~~~~~Gdtl 84 (86)
T cd03691 64 AEAGDIVAIAGIEDITIGDTI 84 (86)
T ss_pred ECCCCEEEEECCCCCccccee
Confidence 567777777777666677665
No 60
>PF00717 Peptidase_S24: Peptidase S24-like peptidase classification. ; InterPro: IPR019759 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ].; PDB: 1KCA_H 3BDN_A 1F39_A 1JHH_A 1JHE_B 3JSP_A 1JHF_B 1JHC_A 3JSO_B 1B12_D ....
Probab=23.22 E-value=60 Score=22.50 Aligned_cols=18 Identities=17% Similarity=0.204 Sum_probs=8.9
Q ss_pred CCCEEEecccCccCCCCe
Q 025903 147 NGDSIFTERLKFCEVNDK 164 (246)
Q Consensus 147 ~GD~I~VerLk~~evGd~ 164 (246)
.||+|.|++......|+.
T Consensus 13 ~Gd~v~v~~~~~~~~gdi 30 (70)
T PF00717_consen 13 DGDIVLVDPSSEPKDGDI 30 (70)
T ss_dssp TTEEEEEEETS---TTSE
T ss_pred CCCEEEEEEcCCCccCeE
Confidence 566666665544455554
No 61
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=23.05 E-value=36 Score=35.32 Aligned_cols=13 Identities=8% Similarity=-0.069 Sum_probs=6.6
Q ss_pred cccCCceEEEEEE
Q 025903 131 FKKYEPAFAVVQF 143 (246)
Q Consensus 131 ~k~~~~MYAIVQY 143 (246)
-.|...|=|-++|
T Consensus 534 napkra~sa~m~w 546 (615)
T KOG0526|consen 534 NAPKRATSAYMLW 546 (615)
T ss_pred CCCccchhHHHHH
Confidence 3444555555544
No 62
>KOG1980 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.47 E-value=61 Score=34.41 Aligned_cols=28 Identities=32% Similarity=0.220 Sum_probs=15.4
Q ss_pred EEEEEEEee--cCCceeEEEEecCCCCcccc
Q 025903 190 AVHAVVEEH--ALDAKVIIFKKKRRKNYRRT 218 (246)
Q Consensus 190 ~VkAtVlEh--~KgkKViIFK~KRRK~yrRk 218 (246)
.+.|+|+.- +--..|++||+.. .+....
T Consensus 618 a~vaTviaPI~F~ps~vL~FK~s~-~~~~~L 647 (754)
T KOG1980|consen 618 AVVATVIAPITFGPSPVLIFKKSS-DGSLEL 647 (754)
T ss_pred eEEEEEEeccccCCcceEEEEeCC-Ccccce
Confidence 466777653 3344577777655 334333
No 63
>PF06130 PduL: Propanediol utilisation protein PduL; InterPro: IPR008300 Salmonella enterica subsp. enterica serovar Typhimurium degrades 1,2-propanediol by a pathway that requires coenzyme B12, adenosylcobalamin (AdoCbl). Proteins required for 1,2-propanediol degradation are encoded by the pdu operon []. PduL functions in this pathway, but its exact role is not yet determined. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilization of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilization (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and coregulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR010254 from INTERPRO and IPR009204 from INTERPRO for more details on the propanediol utilization pathway and the pdu operon.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups
Probab=22.30 E-value=86 Score=23.86 Aligned_cols=33 Identities=15% Similarity=0.096 Sum_probs=26.6
Q ss_pred EEeeCCCEEEecccCccCCCCe-eeeceEEEEecCCc
Q 025903 143 FKVSNGDSIFTERLKFCEVNDK-LILNKVLLLGSQHQ 178 (246)
Q Consensus 143 YKV~~GD~I~VerLk~~evGd~-I~LdkVLlVgs~d~ 178 (246)
|-+++||++.++. . -.|.+ .+|++|+..++..+
T Consensus 21 l~~~dg~~v~ve~-~--~~g~r~~~~~~V~Vrv~~~~ 54 (71)
T PF06130_consen 21 LFGQDGQFVSVEV-T--VVGPRGGIFENVRVRVPERF 54 (71)
T ss_pred hCCCCCCEEEEEE-e--ccCCCcceeeeeEEEcCCCc
Confidence 5568999999987 4 46888 99999999887654
No 64
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=22.08 E-value=45 Score=33.56 Aligned_cols=39 Identities=26% Similarity=0.442 Sum_probs=0.0
Q ss_pred ecCCCCCCCCCCCCCCcccccccccccCCccccccccCC
Q 025903 62 SSNKNDDEGEDVDEDEDEDEETADESYEGEEIGDTVPDL 100 (246)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (246)
|++.+|.+..+.-++++++|||.+++.|+|+.+.-.+.+
T Consensus 277 ~~d~sd~~sse~~eneed~Ded~e~e~ddEE~~e~~map 315 (542)
T KOG0699|consen 277 SPDDSDAESSEFVENEEDDDEDAEDEQDDEEMVEGSMAP 315 (542)
T ss_pred CCcccccccchhcccccccccccccccchhhhhhhcccc
No 65
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=21.93 E-value=98 Score=22.47 Aligned_cols=21 Identities=29% Similarity=0.213 Sum_probs=11.3
Q ss_pred eeCCCEEEecccCccCCCCee
Q 025903 145 VSNGDSIFTERLKFCEVNDKL 165 (246)
Q Consensus 145 V~~GD~I~VerLk~~evGd~I 165 (246)
+..||+..+..++.+.+||+|
T Consensus 61 ~~aGdI~~i~g~~~~~~Gdtl 81 (83)
T cd04088 61 AGAGDIGAVAGLKDTATGDTL 81 (83)
T ss_pred eCCCCEEEEECCCCCccCCEe
Confidence 445555555555545555554
No 66
>PF15402 Spc7_N: N-terminus of kinetochore NMS complex subunit Spc7
Probab=21.49 E-value=63 Score=35.31 Aligned_cols=7 Identities=29% Similarity=0.288 Sum_probs=3.5
Q ss_pred EEEeeCC
Q 025903 142 QFKVSNG 148 (246)
Q Consensus 142 QYKV~~G 148 (246)
|=||++|
T Consensus 379 ~pW~KK~ 385 (927)
T PF15402_consen 379 QPWIKKG 385 (927)
T ss_pred cccccCC
Confidence 4455555
No 67
>KOG4363 consensus Putative growth response protein [Signal transduction mechanisms]
Probab=21.18 E-value=1e+02 Score=29.18 Aligned_cols=14 Identities=7% Similarity=-0.194 Sum_probs=6.0
Q ss_pred cccccCCCCCcccc
Q 025903 29 STSISLKGLTPFQH 42 (246)
Q Consensus 29 ~~~~~~~~~~~~~~ 42 (246)
|+..+.-.++|++.
T Consensus 12 ph~y~~nr~~pp~l 25 (270)
T KOG4363|consen 12 PHKYIKNRERPPFL 25 (270)
T ss_pred CcccccceecCCcc
Confidence 33344444445433
No 68
>PF03153 TFIIA: Transcription factor IIA, alpha/beta subunit; InterPro: IPR004855 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the precursor that yields both the alpha and beta subunits of TFIIA. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II []. ; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_B 1YTF_B 1RM1_C 1NH2_B.
Probab=21.10 E-value=38 Score=31.91 Aligned_cols=7 Identities=0% Similarity=-0.040 Sum_probs=2.5
Q ss_pred CceEEEE
Q 025903 135 EPAFAVV 141 (246)
Q Consensus 135 ~~MYAIV 141 (246)
+-|.|..
T Consensus 332 ~~~~c~~ 338 (375)
T PF03153_consen 332 NVVLCQY 338 (375)
T ss_dssp -EEEEEE
T ss_pred CEEEEEe
Confidence 4444433
No 69
>PF05432 BSP_II: Bone sialoprotein II (BSP-II); InterPro: IPR008412 The major non-collagenous matrix proteins (chondroitin-sulphate glycoproteins decorin and biglycan, sialoproteins osteopontin and bone sialoprotein, osteocalcin and osteonectin) have important roles in formation and organisation of the collagen matrix and nucleation and growth of hydroxyapatite crystals. Bone sialoprotein (BSP) is a major structural protein of the bone matrix that is specifically expressed by fully differentiated osteoblasts [], [] and is highly specific for mineralising tissues. The expression of bone sialoprotein (BSP) is normally restricted to mineralised connective tissues of bones and teeth; it is thought to be responsible for nucleation of hydroxyapatite crystals. BSP also displays a high affinity for calcium ions. The mature protein has a molecular weight of around 33 kDa and consists predominantly of Glu and Gly residues. It is subject to extensive posttranslational modification, and is predominantly phosphorylated at Ser residues. Posttranslational modifications can also cause BSP to act as an inhibitor of hydroxyapatite crystal formation. Ectopic expression of BSP occurs in various lesions, including oral and extraoral carcinomas, in which it has been associated with the formation of microcrystalline deposits and the metastasis of cancer cells to bone []. This entry represents the bone sialoprotein II group of proteins.; GO: 0001503 ossification, 0007155 cell adhesion, 0005576 extracellular region
Probab=20.96 E-value=68 Score=30.64 Aligned_cols=16 Identities=19% Similarity=0.414 Sum_probs=8.1
Q ss_pred ccce---eecCCCCCCCCC
Q 025903 57 HYRH---FSSNKNDDEGED 72 (246)
Q Consensus 57 ~~~~---~~~~~~~~~~~~ 72 (246)
..|+ ++|+|+..++|.
T Consensus 39 lKR~~vq~~sDSSEEngdg 57 (292)
T PF05432_consen 39 LKRFPVQSNSDSSEENGDG 57 (292)
T ss_pred hhhccccCCCCcccccCCC
Confidence 5555 455555444444
No 70
>PF03153 TFIIA: Transcription factor IIA, alpha/beta subunit; InterPro: IPR004855 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the precursor that yields both the alpha and beta subunits of TFIIA. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II []. ; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_B 1YTF_B 1RM1_C 1NH2_B.
Probab=20.76 E-value=26 Score=33.01 Aligned_cols=12 Identities=25% Similarity=0.202 Sum_probs=5.1
Q ss_pred hcceEEeccCcc
Q 025903 115 EIGYKVLGPLRK 126 (246)
Q Consensus 115 ~i~~~v~~~l~~ 126 (246)
..+-.|+..+.+
T Consensus 329 ~~~~~~~c~~~k 340 (375)
T PF03153_consen 329 DTDNVVLCQYDK 340 (375)
T ss_dssp TTS-EEEEEEEE
T ss_pred CcCCEEEEEeec
Confidence 445555544433
No 71
>PRK06033 hypothetical protein; Validated
Probab=20.53 E-value=1.2e+02 Score=23.33 Aligned_cols=38 Identities=16% Similarity=0.241 Sum_probs=17.8
Q ss_pred cCCCCeeeece-----EEEEecCCceEecCCccCCcEEEEEEE
Q 025903 159 CEVNDKLILNK-----VLLLGSQHQTIIGRPMVPDAAVHAVVE 196 (246)
Q Consensus 159 ~evGd~I~Ldk-----VLlVgs~d~t~IG~P~L~gA~VkAtVl 196 (246)
.++||.|.|++ |-+.-++-....|.|...+-+.-..|.
T Consensus 28 L~~GDVI~L~~~~~~~v~v~V~~~~~f~g~~G~~~~~~AV~I~ 70 (83)
T PRK06033 28 MGRGAVIPLDATEADEVWILANNHPIARGEVLIDRNRIAVEVT 70 (83)
T ss_pred CCCCCEEEeCCCCCCcEEEEECCEEEEEEEEEEECCEEEEEEE
Confidence 44555555543 333333333445666665554433343
No 72
>PF14851 FAM176: FAM176 family
Probab=20.18 E-value=73 Score=27.67 Aligned_cols=15 Identities=20% Similarity=0.262 Sum_probs=9.2
Q ss_pred CccCHHHHHHHHHhc
Q 025903 102 REYTLEEKEAEAAEI 116 (246)
Q Consensus 102 ~~~~~~e~~~ea~~i 116 (246)
-++|..|..+-|+.+
T Consensus 111 nvf~sae~~e~A~rl 125 (153)
T PF14851_consen 111 NVFTSAEELERAQRL 125 (153)
T ss_pred CCcccHHHHHHHHHH
Confidence 356776656666654
Done!