Query 025903
Match_columns 246
No_of_seqs 144 out of 1122
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 20:14:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025903.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025903hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r8s_R 50S ribosomal protein L 100.0 4.4E-39 1.5E-43 255.3 12.9 98 137-235 1-103 (103)
2 3v2d_V 50S ribosomal protein L 100.0 4.3E-38 1.5E-42 249.1 12.3 96 137-235 1-101 (101)
3 2zjr_O 50S ribosomal protein L 100.0 1.7E-37 5.9E-42 245.1 4.7 95 137-235 1-100 (100)
4 3bbo_T Ribosomal protein L21; 100.0 3.9E-38 1.3E-42 282.4 -1.2 111 130-240 117-232 (257)
5 2ayu_A Nucleosome assembly pro 66.0 1.2 4.3E-05 42.3 0.0 9 54-62 352-361 (417)
6 2zd7_A VPS75, vacuolar protein 57.5 0.77 2.6E-05 40.9 -2.9 10 54-63 208-218 (264)
7 1pyv_A ATP synthase beta chain 54.0 6.7 0.00023 27.2 2.0 16 1-16 1-16 (54)
8 2byk_A Chrac-16; nucleosome sl 51.0 3.2 0.00011 33.9 0.0 7 9-15 56-62 (140)
9 2lc4_A PILP protein; type IV p 43.8 17 0.00059 28.7 3.2 30 118-154 31-65 (111)
10 2y4x_A PILP protein; biosynthe 43.0 18 0.00061 27.6 3.1 30 118-154 24-58 (93)
11 2ivw_A PILP pilot protein; lip 41.3 19 0.00064 28.6 3.1 30 118-154 27-61 (113)
12 3ay5_A Cyclin-D1-binding prote 31.1 17 0.00058 33.5 1.5 8 103-110 232-239 (360)
13 4aco_A Centromere DNA-binding 30.5 11 0.00036 39.5 0.0 10 190-199 851-860 (956)
14 4av2_M PILP protein, type IV p 26.8 41 0.0014 28.3 3.0 29 118-153 95-128 (181)
15 2fho_A Spliceosomal protein SF 25.7 36 0.0012 23.4 2.0 28 98-126 16-43 (47)
16 1hmj_A RPB5, protein (subunit 24.9 49 0.0017 24.8 2.7 59 103-170 14-73 (78)
17 3bbo_G Ribosomal protein L4; l 22.8 18 0.00061 33.0 0.0 7 61-67 259-265 (293)
18 4ayb_H DNA-directed RNA polyme 20.2 73 0.0025 23.9 2.9 57 102-167 21-78 (84)
No 1
>3r8s_R 50S ribosomal protein L21; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1vs8_R 1vs6_R 2aw4_R 2awb_R 1vt2_R 2i2v_R 2j28_R 2i2t_R* 2qao_R* 2qba_R* 2qbc_R* 2qbe_R 2qbg_R 2qbi_R* 2qbk_R* 2qov_R 2qox_R 2qoz_R* 2qp1_R* 2rdo_R ...
Probab=100.00 E-value=4.4e-39 Score=255.34 Aligned_cols=98 Identities=34% Similarity=0.562 Sum_probs=95.8
Q ss_pred eEEEE-----EEEeeCCCEEEecccCccCCCCeeeeceEEEEecCCceEecCCccCCcEEEEEEEeecCCceeEEEEecC
Q 025903 137 AFAVV-----QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKKR 211 (246)
Q Consensus 137 MYAIV-----QYKV~~GD~I~VerLk~~evGd~I~LdkVLlVgs~d~t~IG~P~L~gA~VkAtVlEh~KgkKViIFK~KR 211 (246)
||||| ||||++||+|.||+|+ +++|++|+|++|||+++++++.+|+|+|++|+|+|+|++|+|++|+++|||||
T Consensus 1 MyAIi~~gGkQykV~~Gd~i~vekl~-~~~G~~v~~~~VLlv~~~~~~~iG~P~v~~a~V~a~V~~~~k~~Kv~vfK~kr 79 (103)
T 3r8s_R 1 MYAVFQSGGKQHRVSEGQTVRLEKLD-IATGETVEFAEVLMIANGEEVKIGVPFVDGGVIKAEVVAHGRGEKVKIVKFRR 79 (103)
T ss_dssp CEEEEECSSSEEEEETTCEEEESCCC-SCTTCEEEECCEEEEESSSEEECSSSSCTTCEEEEEEEEEEECCCEEEEEEET
T ss_pred CEEEEEECCEEEEEeCCCEEEECCcC-CCCCCEEEEeEEEEEecCCCEEECCcccCCcEEEEEEEeccCCCcEEEEEecC
Confidence 99999 8999999999999998 79999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccCccCcceEEEEceEec
Q 025903 212 RKNYRRTKGHRQELTKLRIVDIQG 235 (246)
Q Consensus 212 RK~yrRk~GHRQ~yTrIRI~~I~~ 235 (246)
||+|||++||||+||+|+|++|.+
T Consensus 80 rK~yrrk~GHRQ~~T~l~I~~I~~ 103 (103)
T 3r8s_R 80 RKHYRKQQGHRQWFTDVKITGISA 103 (103)
T ss_dssp TTTEEEEEEECCEEEEEEEEEEEC
T ss_pred CCCccCCCcccCCeEEEEEEEEEC
Confidence 999999999999999999999974
No 2
>3v2d_V 50S ribosomal protein L21; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_P 2hgj_U 2hgq_U 2hgu_U 1vsa_P 2j03_V 2jl6_V 2jl8_V 2v47_V 2v49_V 2wdi_V 2wdj_V 2wdl_V 2wdn_V 2wh2_V 2wh4_V 2wrj_V 2wrl_V 2wro_V 2wrr_V ...
Probab=100.00 E-value=4.3e-38 Score=249.14 Aligned_cols=96 Identities=42% Similarity=0.638 Sum_probs=92.5
Q ss_pred eEEEE-----EEEeeCCCEEEecccCccCCCCeeeeceEEEEecCCceEecCCccCCcEEEEEEEeecCCceeEEEEecC
Q 025903 137 AFAVV-----QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKKR 211 (246)
Q Consensus 137 MYAIV-----QYKV~~GD~I~VerLk~~evGd~I~LdkVLlVgs~d~t~IG~P~L~gA~VkAtVlEh~KgkKViIFK~KR 211 (246)
||||| ||||++||+|.||+|+ +++|++|+|+ |||+++++ +.+|+|+|++|+|+|+|++|+|++|+++|||||
T Consensus 1 MyAIi~~gGkQykV~~Gd~i~vekl~-~~~G~~v~~~-VLlv~~~~-~~iG~P~v~~a~V~a~V~~~~k~~Kv~vfK~kr 77 (101)
T 3v2d_V 1 MFAIVKTGGKQYRVEPGLKLRVEKLD-AEPGATVELP-VLLLGGEK-TVVGTPVVEGASVVAEVLGHGRGKKILVSKFKA 77 (101)
T ss_dssp CEEEEEETTEEEEECTTCEEEESCCS-CCTTCEEEEC-EEEEESSS-CEECSSSCSSCCEEEEEEEEEECCCEEEEEEET
T ss_pred CEEEEEeCCEEEEEeCCCEEEECCcC-CCCCCEEEEE-EEEECCCc-eEECCcccCCCEEEEEEeeccCCCcEEEEEECC
Confidence 99999 7999999999999998 7999999999 99998655 899999999999999999999999999999999
Q ss_pred CCCcccccCccCcceEEEEceEec
Q 025903 212 RKNYRRTKGHRQELTKLRIVDIQG 235 (246)
Q Consensus 212 RK~yrRk~GHRQ~yTrIRI~~I~~ 235 (246)
||+|||++||||+||+|+|++|.+
T Consensus 78 rK~yrrk~GHRQ~~T~l~I~~I~g 101 (101)
T 3v2d_V 78 KVQYRRKKGHRQPYTELLIKEIRG 101 (101)
T ss_dssp TTTEEEEEEECCEEEEEEEEEECC
T ss_pred CCCcCCCCcccCCeEEEEEEEEeC
Confidence 999999999999999999999964
No 3
>2zjr_O 50S ribosomal protein L21; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.155.1.1 PDB: 1nwx_P* 1nwy_P* 1pnu_P 1pny_P 1sm1_P* 1vor_S 1vou_S 1vow_S 1voy_S 1vp0_S 1xbp_P* 1yl3_2 2b66_V 2b9n_V 2b9p_V 2zjp_O* 2zjq_O 1nkw_P 3cf5_O* 3dll_O* ...
Probab=100.00 E-value=1.7e-37 Score=245.10 Aligned_cols=95 Identities=42% Similarity=0.645 Sum_probs=87.4
Q ss_pred eEEEE-----EEEeeCCCEEEecccCccCCCCeeeeceEEEEecCCceEecCCccCCcEEEEEEEeecCCceeEEEEecC
Q 025903 137 AFAVV-----QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKKR 211 (246)
Q Consensus 137 MYAIV-----QYKV~~GD~I~VerLk~~evGd~I~LdkVLlVgs~d~t~IG~P~L~gA~VkAtVlEh~KgkKViIFK~KR 211 (246)
||||| ||||++||+|.||+|+ +++|++|+|+ |||+++ +++.+|+| |++|+|+|+|++|+|++|+++|||||
T Consensus 1 myAIi~~gGkQykV~~Gd~i~vekl~-~~~G~~v~~~-VLlv~~-~~~~iG~P-v~~a~V~a~V~~~~k~~Kv~vfK~kr 76 (100)
T 2zjr_O 1 MFAIIQTGGKQYRVSEGDVIRVESLQ-GEAGDKVELK-ALFVGG-EQTVFGED-AGKYTVQAEVVEHGRGKKIYIRKYKS 76 (100)
T ss_dssp ----CCSSCCSCCSCCEEEEECCSCC-SSCCEEEECC-SCEETT-SCEECSST-TTTSCEEEEEEECCBCCCEEEEEECS
T ss_pred CEEEEEECCEEEEEeCCCEEEEcccC-CCCCCEEEEE-EEEEcC-CCeEECCc-CCCCEEEEEEEeecCCCcEEEEEECC
Confidence 89999 7999999999999998 7999999999 999998 88999999 99999999999999999999999999
Q ss_pred CCCcccccCccCcceEEEEceEec
Q 025903 212 RKNYRRTKGHRQELTKLRIVDIQG 235 (246)
Q Consensus 212 RK~yrRk~GHRQ~yTrIRI~~I~~ 235 (246)
||+|||++||||+||+|+|++|.+
T Consensus 77 rK~yrrk~GHRQ~~T~l~I~~I~~ 100 (100)
T 2zjr_O 77 GVQYRRRTGHRQNFTAIKILGIQG 100 (100)
T ss_dssp SSCCEEEEEECCBEEEEECCCC--
T ss_pred CCCCcCCCCccCCcEEEEEEEEEC
Confidence 999999999999999999999863
No 4
>3bbo_T Ribosomal protein L21; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=3.9e-38 Score=282.41 Aligned_cols=111 Identities=54% Similarity=0.786 Sum_probs=97.2
Q ss_pred ccccCCceEEEE-----EEEeeCCCEEEecccCccCCCCeeeeceEEEEecCCceEecCCccCCcEEEEEEEeecCCcee
Q 025903 130 VFKKYEPAFAVV-----QFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKV 204 (246)
Q Consensus 130 ~~k~~~~MYAIV-----QYKV~~GD~I~VerLk~~evGd~I~LdkVLlVgs~d~t~IG~P~L~gA~VkAtVlEh~KgkKV 204 (246)
..+.++.||||| ||||++||+|.|++|+++++|++|.|++|||++++++++||+|||+|++|+|+|++|+||+||
T Consensus 117 ~~k~~~~MYAIIetGGKQYKV~~GD~I~VEKL~~aevGd~V~LdkVLlVg~~d~t~VG~P~V~gAkV~AtVveh~KgkKI 196 (257)
T 3bbo_T 117 PPPREEIIFAVVVIGSRQYIVIPGRWIYTQRLKGATVNDKIVLNKVLLVGTKASTYIGTPIVTNAAVHAVVEEQLLDDKV 196 (257)
T ss_dssp -------CCCCCCSSSCCCCCCTTCCCCCCCCTTSCTTCEEECTTCCCBCSSSCBCCSSSSCSSCCCEEECCCCCCCSCC
T ss_pred CCCcCCCeEEEEEECCEEEEEeCCCEEEEeCCCCCCCCCEEEEEEEEEEeCCCCeEeCCcccCCCEEEEEEEeecCCCcE
Confidence 345667899999 899999999999999867999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCcccccCccCcceEEEEceEecccchh
Q 025903 205 IIFKKKRRKNYRRTKGHRQELTKLRIVDIQGIEKRV 240 (246)
Q Consensus 205 iIFK~KRRK~yrRk~GHRQ~yTrIRI~~I~~i~~p~ 240 (246)
+||||||||+|||++||||+||+|||++|.+...+.
T Consensus 197 iVFK~KRRK~yRRk~GHRQ~~T~LrI~~I~~~g~~~ 232 (257)
T 3bbo_T 197 IVFKYKKKKNYRRNIGHRQPITRIKITGITGYEDYP 232 (257)
T ss_dssp CEEECCTTTTCCEEECCCCCCCCCCCCCCCC-----
T ss_pred EEEEeCCCCCCcCCCCccCCcEEEEEEEEEcCCCCc
Confidence 999999999999999999999999999999876554
No 5
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=65.99 E-value=1.2 Score=42.29 Aligned_cols=9 Identities=11% Similarity=0.054 Sum_probs=4.5
Q ss_pred ccccc-ceee
Q 025903 54 NWSHY-RHFS 62 (246)
Q Consensus 54 ~~~~~-~~~~ 62 (246)
+||+. -||-
T Consensus 352 IiP~AV~yft 361 (417)
T 2ayu_A 352 LIPRAVDWFT 361 (417)
T ss_dssp TTTTHHHHHH
T ss_pred ccccHHHHhc
Confidence 56743 3554
No 6
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A
Probab=57.48 E-value=0.77 Score=40.87 Aligned_cols=10 Identities=0% Similarity=0.248 Sum_probs=5.5
Q ss_pred cccc-cceeec
Q 025903 54 NWSH-YRHFSS 63 (246)
Q Consensus 54 ~~~~-~~~~~~ 63 (246)
+||+ -.||.-
T Consensus 208 I~P~al~yf~g 218 (264)
T 2zd7_A 208 IYPFCVKYYAE 218 (264)
T ss_dssp HHHHHHHHHHH
T ss_pred hccCHHHHhcc
Confidence 5773 346753
No 7
>1pyv_A ATP synthase beta chain, mitochondrial precursor; hydrolase; NMR {Nicotiana plumbaginifolia} SCOP: j.36.4.1
Probab=53.99 E-value=6.7 Score=27.24 Aligned_cols=16 Identities=50% Similarity=0.578 Sum_probs=13.3
Q ss_pred CchhhHHHHHHHhhhh
Q 025903 1 MAHRRCLHVLSRHAAA 16 (246)
Q Consensus 1 ma~~r~~~~~~~~~~~ 16 (246)
||+||-|..|+||...
T Consensus 1 masrrllasllrqsaq 16 (54)
T 1pyv_A 1 MASRRLLASLLRQSAQ 16 (54)
T ss_dssp -CCSHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHHH
Confidence 9999999999998754
No 8
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=51.04 E-value=3.2 Score=33.92 Aligned_cols=7 Identities=29% Similarity=0.074 Sum_probs=2.8
Q ss_pred HHHHhhh
Q 025903 9 VLSRHAA 15 (246)
Q Consensus 9 ~~~~~~~ 15 (246)
.|+.+|.
T Consensus 56 ~Lt~~A~ 62 (140)
T 2byk_A 56 HLAGAAY 62 (140)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444333
No 9
>2lc4_A PILP protein; type IV pilus, structural protein; NMR {Pseudomonas aeruginosa}
Probab=43.79 E-value=17 Score=28.73 Aligned_cols=30 Identities=27% Similarity=0.558 Sum_probs=22.4
Q ss_pred eEEeccCcccccccccCCceEEEEE-----EEeeCCCEEEec
Q 025903 118 YKVLGPLRKSDRVFKKYEPAFAVVQ-----FKVSNGDSIFTE 154 (246)
Q Consensus 118 ~~v~~~l~~~~~~~k~~~~MYAIVQ-----YKV~~GD~I~Ve 154 (246)
++.+|-|... +.++|+|| |+|..|+.|=-+
T Consensus 31 L~mvG~l~~~-------~~~~ALV~~dG~vyrVk~G~ylG~n 65 (111)
T 2lc4_A 31 FEMVGTLSNA-------QGTFALVKGAGGVHRVRVGDYLGRN 65 (111)
T ss_dssp CEEEEEEEET-------TEEEEEEEETTEEEEEETTCEETTT
T ss_pred eEEEEEEccC-------CeEEEEEEeCCcEEEEccCCEeccC
Confidence 5666655554 77999997 999999988543
No 10
>2y4x_A PILP protein; biosynthetic protein; 1.70A {Pseudomonas aeruginosa PAO1} PDB: 2y4y_A
Probab=42.95 E-value=18 Score=27.59 Aligned_cols=30 Identities=27% Similarity=0.558 Sum_probs=22.5
Q ss_pred eEEeccCcccccccccCCceEEEEE-----EEeeCCCEEEec
Q 025903 118 YKVLGPLRKSDRVFKKYEPAFAVVQ-----FKVSNGDSIFTE 154 (246)
Q Consensus 118 ~~v~~~l~~~~~~~k~~~~MYAIVQ-----YKV~~GD~I~Ve 154 (246)
++.+|-|... +.++|+|| |+|..|+.|=-+
T Consensus 24 L~mvG~l~~~-------~~~~ALV~~dg~v~~V~~G~yiG~n 58 (93)
T 2y4x_A 24 FEMVGTLSNA-------QGTFALVKGAGGVHRVRVGDYLGRN 58 (93)
T ss_dssp CEEEEEEEET-------TEEEEEEEETTEEEEECTTCEETTT
T ss_pred eEEEEEEccC-------CeEEEEEEeCCCEEEEccCCEeccC
Confidence 5666666554 77999997 999999988443
No 11
>2ivw_A PILP pilot protein; lipoprotein, pilus biogenesis, secretin; NMR {Neisseria meningitidis}
Probab=41.32 E-value=19 Score=28.59 Aligned_cols=30 Identities=13% Similarity=0.339 Sum_probs=22.3
Q ss_pred eEEeccCcccccccccCCceEEEEE-----EEeeCCCEEEec
Q 025903 118 YKVLGPLRKSDRVFKKYEPAFAVVQ-----FKVSNGDSIFTE 154 (246)
Q Consensus 118 ~~v~~~l~~~~~~~k~~~~MYAIVQ-----YKV~~GD~I~Ve 154 (246)
++.+|-|... +..+|+|| |+|..|++|=.+
T Consensus 27 LkmvGtl~~~-------~~~~ALV~~dG~vyrVk~G~yiG~N 61 (113)
T 2ivw_A 27 MRYVGILKSG-------QKVSGFIEAEGYVYTVGVGNYLGQN 61 (113)
T ss_dssp EEEEEEEECS-------SSEEEEEEETTEEEEECSSEEETTT
T ss_pred eEEEEEEccC-------CeEEEEEEeCCcEEEEccCCEeccC
Confidence 5666666554 67999997 999999888433
No 12
>3ay5_A Cyclin-D1-binding protein 1; dominant-negative helix-loop-helix transcriptional regulator cycle; 2.50A {Homo sapiens}
Probab=31.08 E-value=17 Score=33.49 Aligned_cols=8 Identities=13% Similarity=0.443 Sum_probs=4.8
Q ss_pred ccCHHHHH
Q 025903 103 EYTLEEKE 110 (246)
Q Consensus 103 ~~~~~e~~ 110 (246)
.+++||+.
T Consensus 232 ~~s~ee~~ 239 (360)
T 3ay5_A 232 YWSEDDQE 239 (360)
T ss_dssp SCCHHHHH
T ss_pred ccCHHHHH
Confidence 36777653
No 13
>4aco_A Centromere DNA-binding protein complex CBF3 subun; 1.89A {Saccharomyces cerevisiae}
Probab=30.53 E-value=11 Score=39.47 Aligned_cols=10 Identities=10% Similarity=0.302 Sum_probs=0.0
Q ss_pred EEEEEEEeec
Q 025903 190 AVHAVVEEHA 199 (246)
Q Consensus 190 ~VkAtVlEh~ 199 (246)
+|.+.|+|-+
T Consensus 851 sIe~IIlEWF 860 (956)
T 4aco_A 851 SIEGIILEWF 860 (956)
T ss_dssp ----------
T ss_pred hHHHHHHHHc
Confidence 5788888865
No 14
>4av2_M PILP protein, type IV pilus biogenesis and competence protein P; protein transport, outer membrane protein; 26.00A {Neisseria meningitidis MC58}
Probab=26.79 E-value=41 Score=28.29 Aligned_cols=29 Identities=14% Similarity=0.340 Sum_probs=22.2
Q ss_pred eEEeccCcccccccccCCceEEEEE-----EEeeCCCEEEe
Q 025903 118 YKVLGPLRKSDRVFKKYEPAFAVVQ-----FKVSNGDSIFT 153 (246)
Q Consensus 118 ~~v~~~l~~~~~~~k~~~~MYAIVQ-----YKV~~GD~I~V 153 (246)
++.+|-|... +.++|+|+ |+|..|+.|=.
T Consensus 95 L~mvG~l~~~-------~~~~alv~~dg~v~~V~~G~ylG~ 128 (181)
T 4av2_M 95 MRYVGILKSG-------QKVSGFIEAEGYVYTVGVGNYLGQ 128 (181)
T ss_dssp EEEEEEECSS-------SCCEEEEEETTEEEEECSSEEETT
T ss_pred eEEEEEEEeC-------CEEEEEEecCCCEEEEccCCEecc
Confidence 5677666543 67899997 99999998843
No 15
>2fho_A Spliceosomal protein SF3B155; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.71 E-value=36 Score=23.41 Aligned_cols=28 Identities=39% Similarity=0.462 Sum_probs=22.0
Q ss_pred cCCCCccCHHHHHHHHHhcceEEeccCcc
Q 025903 98 PDLGREYTLEEKEAEAAEIGYKVLGPLRK 126 (246)
Q Consensus 98 ~~~~~~~~~~e~~~ea~~i~~~v~~~l~~ 126 (246)
....+.||+||-.+..=+ ||+|+.|=.+
T Consensus 16 ~~rnrpltDEeLD~~LP~-GY~il~pP~~ 43 (47)
T 2fho_A 16 DERNRPLSDEELDAMFPE-GYKVLPPPAG 43 (47)
T ss_dssp CCCCCCSCTTHHHHHSCT-TEEECCCCTT
T ss_pred ccccCCCCHHHHHHhCCC-CCeecCCCCC
Confidence 346688999998888874 9999987543
No 16
>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} SCOP: d.78.1.1
Probab=24.85 E-value=49 Score=24.75 Aligned_cols=59 Identities=20% Similarity=0.120 Sum_probs=39.1
Q ss_pred ccCHHHHHHHHHhcceEEeccCcccccccccCCceEEEEE-EEeeCCCEEEecccCccCCCCeeeeceE
Q 025903 103 EYTLEEKEAEAAEIGYKVLGPLRKSDRVFKKYEPAFAVVQ-FKVSNGDSIFTERLKFCEVNDKLILNKV 170 (246)
Q Consensus 103 ~~~~~e~~~ea~~i~~~v~~~l~~~~~~~k~~~~MYAIVQ-YKV~~GD~I~VerLk~~evGd~I~LdkV 170 (246)
.||+||+.+-.+.-+.+ ..+|+... ..+ .|++ |-..+||++.+-|-. -..|.-+..--|
T Consensus 14 iLs~eEk~~lL~~y~i~-~~qLPrI~--~~D-----Pvar~~G~k~GdVvkI~R~S-~taG~~v~YR~V 73 (78)
T 1hmj_A 14 IVPKEEVEEILKRYNIK-IQQLPKIY--EDD-----PVIQEIGAKEGDVVRVIRKS-PTAGVSIAYRLV 73 (78)
T ss_pred ECCHHHHHHHHHHcCCC-HHHCCeee--CcC-----HhhHHhCCCCCCEEEEEECC-CCCCCcEEEEEE
Confidence 47899998888887755 33444431 001 2333 688999999998776 467887776533
No 17
>3bbo_G Ribosomal protein L4; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=22.85 E-value=18 Score=33.04 Aligned_cols=7 Identities=0% Similarity=0.311 Sum_probs=1.2
Q ss_pred eecCCCC
Q 025903 61 FSSNKND 67 (246)
Q Consensus 61 ~~~~~~~ 67 (246)
|.+..-+
T Consensus 259 l~~~~~~ 265 (293)
T 3bbo_G 259 YGVDTLE 265 (293)
T ss_dssp SCC----
T ss_pred hcccccc
Confidence 3444333
No 18
>4ayb_H DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_H 2y0s_H 2waq_H 4b1o_H 4b1p_Z 2pmz_H 3hkz_H
Probab=20.15 E-value=73 Score=23.87 Aligned_cols=57 Identities=16% Similarity=0.123 Sum_probs=35.9
Q ss_pred CccCHHHHHHHHHhcceEEeccCcccccccccCCceEEEEE-EEeeCCCEEEecccCccCCCCeeee
Q 025903 102 REYTLEEKEAEAAEIGYKVLGPLRKSDRVFKKYEPAFAVVQ-FKVSNGDSIFTERLKFCEVNDKLIL 167 (246)
Q Consensus 102 ~~~~~~e~~~ea~~i~~~v~~~l~~~~~~~k~~~~MYAIVQ-YKV~~GD~I~VerLk~~evGd~I~L 167 (246)
..+|+||+.+..+..+.+ ..+|+.... .. .|++ |-..+||++.|.|-. -..|..+..
T Consensus 21 ~vLs~eE~~~ll~~y~i~-~~qLP~I~~-----~D--Pva~~~g~k~GdVvkI~R~S-~tag~~~~Y 78 (84)
T 4ayb_H 21 EVLSIDEAYKILKELGIR-PEQLPWIRA-----SD--PVARSINAKPGDIIRIIRKS-QLYGEVVSY 78 (84)
T ss_dssp EECCHHHHHHHHHHHTCC-GGGSCCEES-----SS--HHHHHHTCCTTCEEEEEEEE-TTTEEEEEE
T ss_pred EECCHHHHHHHHHHhcCC-HhHCCeecc-----cC--HhHHhhCCCCCCEEEEEEcC-CCCCccEEE
Confidence 357889988888887754 335555420 00 1122 567899999998876 356766554
Done!