Query 025904
Match_columns 246
No_of_seqs 200 out of 537
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 10:53:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025904.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025904hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2693 Putative zinc transpor 100.0 3.2E-30 6.9E-35 248.7 7.7 185 1-244 178-374 (453)
2 KOG2694 Putative zinc transpor 99.9 1.7E-27 3.7E-32 216.0 9.1 65 176-241 207-280 (361)
3 PF02535 Zip: ZIP Zinc transpo 99.8 3.1E-19 6.8E-24 160.3 9.8 62 180-244 171-241 (317)
4 PRK04201 zinc transporter ZupT 99.6 1.5E-16 3.2E-21 143.6 6.1 67 178-245 118-193 (265)
5 COG0428 Predicted divalent hea 99.4 1.5E-13 3.3E-18 125.0 7.3 64 181-245 120-192 (266)
6 PLN02159 Fe(2+) transport prot 99.1 3.6E-10 7.8E-15 106.3 8.5 62 180-244 183-253 (337)
7 TIGR00820 zip ZIP zinc/iron tr 99.0 1.6E-09 3.6E-14 101.0 10.8 63 179-244 169-240 (324)
8 KOG1558 Fe2+/Zn2+ regulated tr 97.5 0.00061 1.3E-08 64.4 9.7 48 179-229 174-221 (327)
9 KOG2474 Zinc transporter and r 94.4 0.034 7.4E-07 53.9 3.4 59 185-243 249-328 (406)
10 KOG3907 ZIP-like zinc transpor 87.6 0.085 1.8E-06 48.8 -1.9 44 186-229 146-189 (303)
11 PRK04201 zinc transporter ZupT 86.9 0.89 1.9E-05 41.3 4.3 26 181-206 150-175 (265)
12 COG0428 Predicted divalent hea 83.4 1.6 3.5E-05 40.0 4.4 28 181-208 149-176 (266)
13 PF02535 Zip: ZIP Zinc transpo 69.3 4.4 9.6E-05 36.4 3.0 57 1-74 49-105 (317)
14 TIGR00820 zip ZIP zinc/iron tr 64.0 8.6 0.00019 36.2 3.9 26 182-207 199-224 (324)
15 PRK00523 hypothetical protein; 51.6 13 0.00028 28.3 2.3 13 48-60 2-14 (72)
16 PLN02159 Fe(2+) transport prot 51.6 19 0.00041 34.3 4.0 55 1-72 92-147 (337)
17 PRK01844 hypothetical protein; 49.6 14 0.00031 28.1 2.2 26 49-74 2-36 (72)
18 COG1230 CzcD Co/Zn/Cd efflux s 33.3 24 0.00053 33.3 1.6 23 184-206 48-70 (296)
19 PF15183 MRAP: Melanocortin-2 29.4 50 0.0011 26.0 2.5 14 48-61 42-55 (90)
20 PF06422 PDR_CDR: CDR ABC tran 28.0 50 0.0011 26.0 2.3 22 47-68 47-68 (103)
21 PF03620 IBV_3C: IBV 3C protei 23.7 1.2E+02 0.0026 24.0 3.6 27 46-72 13-39 (93)
22 PRK12554 undecaprenyl pyrophos 22.9 93 0.002 28.9 3.4 38 202-246 162-199 (276)
23 TIGR00753 undec_PP_bacA undeca 22.7 96 0.0021 28.5 3.4 36 204-246 158-193 (255)
24 PF15621 PROL5-SMR: Proline-ri 22.5 44 0.00095 27.5 1.1 13 47-59 5-17 (113)
25 PF02673 BacA: Bacitracin resi 22.1 79 0.0017 29.0 2.8 35 205-246 159-193 (259)
26 PF08370 PDR_assoc: Plant PDR 21.3 74 0.0016 23.6 2.0 22 47-68 28-49 (65)
27 PRK00281 undecaprenyl pyrophos 20.8 1.1E+02 0.0024 28.4 3.4 46 194-246 148-197 (268)
No 1
>KOG2693 consensus Putative zinc transporter [Inorganic ion transport and metabolism]
Probab=99.96 E-value=3.2e-30 Score=248.67 Aligned_cols=185 Identities=29% Similarity=0.377 Sum_probs=117.6
Q ss_pred CcchhhhhhcccccCCCCCCCCCCCCCcccc---cccccccCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 025904 1 MLGDAFLHQLPHAFGGEHSHSHDHHENKAHQ---VHVGREQHSHSHSLQDLSVGISVLAGIVLFLIVEKIVRYVEENSGE 77 (246)
Q Consensus 1 LLGDaFLHLLPHaf~g~h~h~~~~~~~h~h~---~~~~~~~~~h~h~~~~l~vGL~VL~Giv~Fl~vEK~vRil~g~~g~ 77 (246)
|+||||||||||++... +|... .+++. .......+-|... +++++++||+. +..|+..||.+|.++|+..+
T Consensus 178 L~gDa~lhLiP~~l~~~-~~~~~---~~s~~~~~~~~~g~~~~~~~~-~~~~i~l~~~~-~~~~~~~~~~~~~~~g~~~~ 251 (453)
T KOG2693|consen 178 LLGDALLHLIPEALGFH-SHLSN---GVSHVTSLAMTGGKYHFFSNE-SNLSIFLAVLG-VSLLFVTEKNMRALKGGGKH 251 (453)
T ss_pred hhHHHHhhhCchhcccc-cCccC---Ccccccchhhcccceeeeccc-ccceeeeeeec-hHHhhccccchhhccCCCCC
Confidence 78999999999999732 22111 11110 0001111222222 68999999998 99999999999999987631
Q ss_pred CCCCCCCCcccccccccccCCCCCCCCccCCCCCCCCCcccccccccccCCCchhhhHHHHhhhccCCCCCCCCCCCccc
Q 025904 78 SNSWGHGHHHHHLKSSKKLKDDDDLGKTQSESSSGTEGIVSNEVSEDSLNGDNLAQHETLLRRRKTTSVDGDYKSDVDAA 157 (246)
Q Consensus 78 ~~~~~~~~h~~~~~~~~~~~~~~~h~h~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrkrk~~~~~k~~~~~~~~~ 157 (246)
+.|.|+++..... ....++.+. +.++.+..
T Consensus 252 ----------------------~gh~h~~~~~~~~----------------------~~e~~~~~~----~~~~~d~~-- 281 (453)
T KOG2693|consen 252 ----------------------HGHSHGHSNTYNP----------------------GSEKITLNV----KDGVGDSV-- 281 (453)
T ss_pred ----------------------CCccCCcCCCcCc----------------------ccccccccc----cccCCCcc--
Confidence 1122222111000 000011110 00100000
Q ss_pred CCCCCccccccccccccCCcchHHHHHHHHHhhhccchhhhHHHHhhhhcccchhHHHHHHHHHhhcccccccc------
Q 025904 158 DGSSSDVKSSEKKEPVQSASNLVFGYLNLFSDGVHNFTDGMALGSAFLLYGSVGGWSRTLFLLAHEIPQEVGFH------ 231 (246)
Q Consensus 158 ~~~~~~~k~~~~~~~~~~~s~~~~g~l~l~~d~~HNf~dGlaigasf~~~~~~~G~~ttlai~lHeiP~eigd~------ 231 (246)
+.+.+.+..+.++.+ .+++++++|||+++|++|||+|||||||||..+.. .||+|++||+|||+||||||+
T Consensus 282 -~~~~~~~~~~~~~~~-~~~l~~~aymil~gD~~HNFtDGLAiGAaF~~s~~-~G~sTsiAVlcHElPHELGDFAILl~s 358 (453)
T KOG2693|consen 282 -SLSSSSFEHKLEEFE-VEELKKVAYMILAGDGLHNFTDGLAIGAAFTSSLL-HGISTSLAVLCHEFPHELGDFAILLRS 358 (453)
T ss_pred -ccCCcchhccccccc-ccchhhHhHHHHhccccccchhhhhhccccccccc-hhHHHHHHHHHHhccHHHHHHHHHHHc
Confidence 011111222222222 46799999999999999999999999999999885 799999999999999999876
Q ss_pred ---hHHHHHHHHHhcC
Q 025904 232 ---LSVYLIVNGILLC 244 (246)
Q Consensus 232 ---~~~al~~~~l~~~ 244 (246)
.+||+++|++++|
T Consensus 359 G~s~kqAl~lnllsal 374 (453)
T KOG2693|consen 359 GLSVKQALLLNLLSAL 374 (453)
T ss_pred CCcHHHHHHHHHHhHH
Confidence 6999999998876
No 2
>KOG2694 consensus Putative zinc transporter [Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.7e-27 Score=215.98 Aligned_cols=65 Identities=37% Similarity=0.495 Sum_probs=57.4
Q ss_pred CcchHHHHHHHHHhhhccchhhhHHHHhhhhcccchhHHHHHHHHHhhcccccccc---------hHHHHHHHHH
Q 025904 176 ASNLVFGYLNLFSDGVHNFTDGMALGSAFLLYGSVGGWSRTLFLLAHEIPQEVGFH---------LSVYLIVNGI 241 (246)
Q Consensus 176 ~s~~~~g~l~l~~d~~HNf~dGlaigasf~~~~~~~G~~ttlai~lHeiP~eigd~---------~~~al~~~~l 241 (246)
+++|+.||||+++..+.||+.|+|++++|+++.+ .|++||+||++||||||+||| ||.|.+....
T Consensus 207 q~~kvagYLNLlAN~iDNFtHGLAVa~SFLVS~k-~GiltT~aILLHEIPHEvgDFAILLRagF~rw~Aa~aQL~ 280 (361)
T KOG2694|consen 207 QPKKVAGYLNLLANIIDNFTHGLAVASSFLVSTK-FGILTTIAILLHEIPHEVGDFAILLRAGFGRWNAALAQLT 280 (361)
T ss_pred cchhHHHHHHHHHHhhhhhhhhhHHhhhhhhhhh-hhHHHHHHHHHhhccchhhhhHHHHHhccchhHHHHHHHH
Confidence 3579999999999999999999999999999985 899999999999999999986 5666555443
No 3
>PF02535 Zip: ZIP Zinc transporter; InterPro: IPR003689 These ZIP zinc transporter proteins define a family of metal ion transporters that are found in plants, protozoa, fungi, invertebrates, and vertebrates, making it now possible to address questions of metal ion accumulation and homeostasis in diverse organisms [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=99.79 E-value=3.1e-19 Score=160.32 Aligned_cols=62 Identities=26% Similarity=0.496 Sum_probs=53.3
Q ss_pred HHHHHHHHHhhhccchhhhHHHHhhhhcccchhHHHHHHHHHhhcccccc---------cchHHHHHHHHHhcC
Q 025904 180 VFGYLNLFSDGVHNFTDGMALGSAFLLYGSVGGWSRTLFLLAHEIPQEVG---------FHLSVYLIVNGILLC 244 (246)
Q Consensus 180 ~~g~l~l~~d~~HNf~dGlaigasf~~~~~~~G~~ttlai~lHeiP~eig---------d~~~~al~~~~l~~~ 244 (246)
..+|+.++++++|||+|||+||+++..+. +|++++||++|++||+++ ..++++++++++.++
T Consensus 171 ~~~~~l~~~~~~Hs~~eGl~ig~~~~~~~---~~~~~~ai~~Hk~~e~~~~~~~l~~~~~~~~~~~~~~~~~sl 241 (317)
T PF02535_consen 171 IRALILLIALSIHSFFEGLAIGAAFSSDS---GWSLFIAIILHKIPEGFALGSILVKAGFSKRKALLLLLLFSL 241 (317)
T ss_pred HHHHHHHHHHHhhcchhhhhhhcchhhhh---HHHHHHHHHHhHhHHHhhhhhhhhhhccccchhhHHHHHHHH
Confidence 45999999999999999999999998643 899999999999999995 457888887775543
No 4
>PRK04201 zinc transporter ZupT; Provisional
Probab=99.65 E-value=1.5e-16 Score=143.62 Aligned_cols=67 Identities=21% Similarity=0.194 Sum_probs=59.8
Q ss_pred chHHHHHHHHHhhhccchhhhHHHHhhhhcccchhHHHHHHHHHhhcccccc---------cchHHHHHHHHHhcCC
Q 025904 178 NLVFGYLNLFSDGVHNFTDGMALGSAFLLYGSVGGWSRTLFLLAHEIPQEVG---------FHLSVYLIVNGILLCP 245 (246)
Q Consensus 178 ~~~~g~l~l~~d~~HNf~dGlaigasf~~~~~~~G~~ttlai~lHeiP~eig---------d~~~~al~~~~l~~~p 245 (246)
.+..+|++++++++||||||+++|++|+.+.. +|+.+++||++||+||+++ .+++|+++++++++++
T Consensus 118 ~~~~~~~~~~a~~lH~~~eGlalg~~~~~~~~-~g~~~~~aI~~H~iPeg~a~~~~l~~~~~s~~~~~~~~~~~~l~ 193 (265)
T PRK04201 118 LKRTGILTALAISIHNFPEGIATFVAALSNPE-LGFPIALAIAIHNIPEGIAVAVPVYYATGSKKKAFLYSFLSGLA 193 (265)
T ss_pred HHHHHHHHHHHHHHHhcchhhhhhhhhhcchh-hHHHHHHHHHHhcCcHHHHHHHHHHHccCcHHHHHHHHHHHHHH
Confidence 34568999999999999999999999998875 7999999999999999995 4689999999987764
No 5
>COG0428 Predicted divalent heavy-metal cations transporter [Inorganic ion transport and metabolism]
Probab=99.44 E-value=1.5e-13 Score=124.99 Aligned_cols=64 Identities=30% Similarity=0.388 Sum_probs=58.5
Q ss_pred HHHHHHHHhhhccchhhhHHHHhhhhcccchhHHHHHHHHHhhcccccc---------cchHHHHHHHHHhcCC
Q 025904 181 FGYLNLFSDGVHNFTDGMALGSAFLLYGSVGGWSRTLFLLAHEIPQEVG---------FHLSVYLIVNGILLCP 245 (246)
Q Consensus 181 ~g~l~l~~d~~HNf~dGlaigasf~~~~~~~G~~ttlai~lHeiP~eig---------d~~~~al~~~~l~~~p 245 (246)
.+|++++++.+||||||+|||++|..++. .|+.+++||.+||||||++ .+|+|+++++.++++.
T Consensus 120 ~~~l~~lai~iHnfpEGlai~va~~~~~~-~gi~~alaI~ihnipEG~av~~pL~~~~~s~~~~l~~~~lsg~~ 192 (266)
T COG0428 120 RGFLLALAISLHNFPEGLAIGVAFLSNPS-LGIALALAIAIHNIPEGLAVALPLAGAGRSRLKALLVAVLSGLA 192 (266)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHhccch-HHHHHHHHHHHhccccHHHHHHHHHhcCCchHHHHHHHHHHHhH
Confidence 48999999999999999999999999885 8999999999999999995 4578999999988864
No 6
>PLN02159 Fe(2+) transport protein
Probab=99.07 E-value=3.6e-10 Score=106.31 Aligned_cols=62 Identities=16% Similarity=0.165 Sum_probs=49.7
Q ss_pred HHHHHHHHHhhhccchhhhHHHHhhhhcccchhHHHHHHHHHhhccccccc---------chHHHHHHHHHhcC
Q 025904 180 VFGYLNLFSDGVHNFTDGMALGSAFLLYGSVGGWSRTLFLLAHEIPQEVGF---------HLSVYLIVNGILLC 244 (246)
Q Consensus 180 ~~g~l~l~~d~~HNf~dGlaigasf~~~~~~~G~~ttlai~lHeiP~eigd---------~~~~al~~~~l~~~ 244 (246)
+..|+..+|+.+|||++|+++|.++..+. ..|+ .+||++||+||++++ .++++++++++.++
T Consensus 183 ~~a~~l~~gl~lHS~~eGlalG~~~~~~~-~~~l--~~AI~~Hk~~eg~aLg~~L~~~~~~~~~~~~~~~~fal 253 (337)
T PLN02159 183 VIAMVLELGIIVHSVVIGLSLGATNDTCT-IKGL--IAALCFHQMFEGMGLGGCILQAEYTNVKKFLMAFFFAV 253 (337)
T ss_pred HHHHHHHHHHHHHHHHhchhhhcCCCchh-HHHH--HHHHHHHhhHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 45799999999999999999999987654 3454 558999999999963 46777777776554
No 7
>TIGR00820 zip ZIP zinc/iron transport family. transport has not been characterized, but these systems probably function as secondary carriers.
Probab=99.03 E-value=1.6e-09 Score=100.96 Aligned_cols=63 Identities=17% Similarity=0.089 Sum_probs=51.3
Q ss_pred hHHHHHHHHHhhhccchhhhHHHHhhhhcccchhHHHHHHHHHhhcccccc---------cchHHHHHHHHHhcC
Q 025904 179 LVFGYLNLFSDGVHNFTDGMALGSAFLLYGSVGGWSRTLFLLAHEIPQEVG---------FHLSVYLIVNGILLC 244 (246)
Q Consensus 179 ~~~g~l~l~~d~~HNf~dGlaigasf~~~~~~~G~~ttlai~lHeiP~eig---------d~~~~al~~~~l~~~ 244 (246)
++..|+..+|+.+|||+||+++|+++..+ ..+.+.+||++|++||+++ ..++++++++++.++
T Consensus 169 ~~~~~~l~~gl~~Hs~~eGlalG~~~~~~---~~~~l~~Ai~~Hk~~eg~alg~~l~~~~~~~~~~~~~~~~fsl 240 (324)
T TIGR00820 169 RVVAQVLELGIIVHSVVIGLSLGASQSPD---TIKPLIAALSFHQFFEGLGLGGCISQAEFKCKSVTIMCTFFAV 240 (324)
T ss_pred HHHHHHHHHHHHhcchhhhhhhhhccCcc---hHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 46788889999999999999999998543 3588899999999999996 346677777775544
No 8
>KOG1558 consensus Fe2+/Zn2+ regulated transporter [Inorganic ion transport and metabolism]
Probab=97.51 E-value=0.00061 Score=64.42 Aligned_cols=48 Identities=21% Similarity=0.248 Sum_probs=40.4
Q ss_pred hHHHHHHHHHhhhccchhhhHHHHhhhhcccchhHHHHHHHHHhhcccccc
Q 025904 179 LVFGYLNLFSDGVHNFTDGMALGSAFLLYGSVGGWSRTLFLLAHEIPQEVG 229 (246)
Q Consensus 179 ~~~g~l~l~~d~~HNf~dGlaigasf~~~~~~~G~~ttlai~lHeiP~eig 229 (246)
++.+++..+|..+|.+.+|||+|++=-.+ .-|...+|+.+|.+=++++
T Consensus 174 ~~~~~iL~lgi~~HSvfeGlalGv~~~~~---ti~~L~~al~fHk~fegf~ 221 (327)
T KOG1558|consen 174 RLRSLILELGLSFHSVFEGLALGVQDSVS---TIWTLFLALSFHKLFEGFG 221 (327)
T ss_pred hHHHHHHHHHHHHHHHHHhhhccccCCHH---HHHHHHHHHHHHHHHHHhc
Confidence 67788889999999999999999865433 2478899999999999995
No 9
>KOG2474 consensus Zinc transporter and related ZIP domain-containing proteins [Inorganic ion transport and metabolism]
Probab=94.45 E-value=0.034 Score=53.92 Aligned_cols=59 Identities=19% Similarity=0.187 Sum_probs=40.4
Q ss_pred HHHHhhhccchhhh-HHHHhhhhcccc--hhHHHH------HHHH---Hhhcccccc---------cchHHHHHHHHHhc
Q 025904 185 NLFSDGVHNFTDGM-ALGSAFLLYGSV--GGWSRT------LFLL---AHEIPQEVG---------FHLSVYLIVNGILL 243 (246)
Q Consensus 185 ~l~~d~~HNf~dGl-aigasf~~~~~~--~G~~tt------lai~---lHeiP~eig---------d~~~~al~~~~l~~ 243 (246)
.+.+++.||.|.|+ +|+++|.....+ -|+.+. +.|. +||+||+++ .++|||++|..+++
T Consensus 249 ~~~~~~~h~~P~g~~~I~va~~~alst~pE~Fe~~~ns~~a~Gf~v~li~nf~Eglavslpl~~a~~Sr~~afl~~a~~g 328 (406)
T KOG2474|consen 249 LTLSITVHNHPEGLIGIQVALGAALSTFPEGFESFYNSSLAIGFGVFLIHNFVEGLAVSLPLAGAGFSRLKAFLYGAVLG 328 (406)
T ss_pred hcchhhcccCcchhhHHHHHHHhhhhcCcHHHHHHhccccccchhHHHHhcccccceeeeehhhhhhHHHHHHHHHHHhh
Confidence 35678899999998 899888743211 122221 1122 999999995 56899999987543
No 10
>KOG3907 consensus ZIP-like zinc transporter proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.57 E-value=0.085 Score=48.78 Aligned_cols=44 Identities=25% Similarity=0.278 Sum_probs=38.5
Q ss_pred HHHhhhccchhhhHHHHhhhhcccchhHHHHHHHHHhhcccccc
Q 025904 186 LFSDGVHNFTDGMALGSAFLLYGSVGGWSRTLFLLAHEIPQEVG 229 (246)
Q Consensus 186 l~~d~~HNf~dGlaigasf~~~~~~~G~~ttlai~lHeiP~eig 229 (246)
.+|.++|-..||+|+|++-.++...+=+.+.+||.+|.+|--+|
T Consensus 146 tlgLvVHaaaDGVALGaaattn~~svqiIVfvAImlHKaPAafg 189 (303)
T KOG3907|consen 146 TLGLVVHAAADGVALGAAATTNNDSVQIIVFVAIMLHKAPAAFG 189 (303)
T ss_pred EEEEEEeeccccceecccccccCCcEEEeehhHHHHhcccHHHH
Confidence 46779999999999998877776556788999999999999987
No 11
>PRK04201 zinc transporter ZupT; Provisional
Probab=86.90 E-value=0.89 Score=41.28 Aligned_cols=26 Identities=19% Similarity=0.477 Sum_probs=23.0
Q ss_pred HHHHHHHHhhhccchhhhHHHHhhhh
Q 025904 181 FGYLNLFSDGVHNFTDGMALGSAFLL 206 (246)
Q Consensus 181 ~g~l~l~~d~~HNf~dGlaigasf~~ 206 (246)
.|++..++..+||+|||+++++.++.
T Consensus 150 ~g~~~~~aI~~H~iPeg~a~~~~l~~ 175 (265)
T PRK04201 150 LGFPIALAIAIHNIPEGIAVAVPVYY 175 (265)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 58899999999999999999887654
No 12
>COG0428 Predicted divalent heavy-metal cations transporter [Inorganic ion transport and metabolism]
Probab=83.45 E-value=1.6 Score=39.99 Aligned_cols=28 Identities=21% Similarity=0.383 Sum_probs=24.7
Q ss_pred HHHHHHHHhhhccchhhhHHHHhhhhcc
Q 025904 181 FGYLNLFSDGVHNFTDGMALGSAFLLYG 208 (246)
Q Consensus 181 ~g~l~l~~d~~HNf~dGlaigasf~~~~ 208 (246)
.|++..+|+++||+|+|++++.-.+...
T Consensus 149 ~gi~~alaI~ihnipEG~av~~pL~~~~ 176 (266)
T COG0428 149 LGIALALAIAIHNIPEGLAVALPLAGAG 176 (266)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHhcC
Confidence 7999999999999999999988777554
No 13
>PF02535 Zip: ZIP Zinc transporter; InterPro: IPR003689 These ZIP zinc transporter proteins define a family of metal ion transporters that are found in plants, protozoa, fungi, invertebrates, and vertebrates, making it now possible to address questions of metal ion accumulation and homeostasis in diverse organisms [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=69.27 E-value=4.4 Score=36.40 Aligned_cols=57 Identities=32% Similarity=0.472 Sum_probs=39.8
Q ss_pred CcchhhhhhcccccCCCCCCCCCCCCCcccccccccccCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHhcC
Q 025904 1 MLGDAFLHQLPHAFGGEHSHSHDHHENKAHQVHVGREQHSHSHSLQDLSVGISVLAGIVLFLIVEKIVRYVEEN 74 (246)
Q Consensus 1 LLGDaFLHLLPHaf~g~h~h~~~~~~~h~h~~~~~~~~~~h~h~~~~l~vGL~VL~Giv~Fl~vEK~vRil~g~ 74 (246)
|||++|+|||||++......... . ...+ ...+.++++++||++++++|++++...+.
T Consensus 49 lL~~a~~hLLPea~~~~~~~~~~-------------~--~~~~--~~~~~~~~~~~Gfl~~~~ie~i~~~~~~~ 105 (317)
T PF02535_consen 49 LLGTAFLHLLPEAIEALESSGCF-------------G--EFGH--SYPLAFLIFLVGFLLFFFIERILHSIFEH 105 (317)
T ss_pred HHHHHHHHcCchhhccccccccc-------------c--cccc--hhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 68999999999999632110000 0 0001 12779999999999999999999776543
No 14
>TIGR00820 zip ZIP zinc/iron transport family. transport has not been characterized, but these systems probably function as secondary carriers.
Probab=64.02 E-value=8.6 Score=36.17 Aligned_cols=26 Identities=19% Similarity=0.218 Sum_probs=21.8
Q ss_pred HHHHHHHhhhccchhhhHHHHhhhhc
Q 025904 182 GYLNLFSDGVHNFTDGMALGSAFLLY 207 (246)
Q Consensus 182 g~l~l~~d~~HNf~dGlaigasf~~~ 207 (246)
.|..++++.+|++++|+++|+.+...
T Consensus 199 ~~~l~~Ai~~Hk~~eg~alg~~l~~~ 224 (324)
T TIGR00820 199 IKPLIAALSFHQFFEGLGLGGCISQA 224 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45668899999999999999988743
No 15
>PRK00523 hypothetical protein; Provisional
Probab=51.62 E-value=13 Score=28.30 Aligned_cols=13 Identities=38% Similarity=0.710 Sum_probs=7.9
Q ss_pred chhHHHHHHHHHH
Q 025904 48 LSVGISVLAGIVL 60 (246)
Q Consensus 48 l~vGL~VL~Giv~ 60 (246)
+++|+||+.+|++
T Consensus 2 ~~~~l~I~l~i~~ 14 (72)
T PRK00523 2 LAIGLALGLGIPL 14 (72)
T ss_pred chHHHHHHHHHHH
Confidence 3567777655554
No 16
>PLN02159 Fe(2+) transport protein
Probab=51.61 E-value=19 Score=34.33 Aligned_cols=55 Identities=18% Similarity=0.259 Sum_probs=35.2
Q ss_pred CcchhhhhhcccccCCCCCCCCCCCCCcccccccccccCCCCCCcccchhHHHHHHHHHHHHHHHHHH-HHHh
Q 025904 1 MLGDAFLHQLPHAFGGEHSHSHDHHENKAHQVHVGREQHSHSHSLQDLSVGISVLAGIVLFLIVEKIV-RYVE 72 (246)
Q Consensus 1 LLGDaFLHLLPHaf~g~h~h~~~~~~~h~h~~~~~~~~~~h~h~~~~l~vGL~VL~Giv~Fl~vEK~v-Ril~ 72 (246)
+|+=+|+||||+++..-...-- .+ ... .+-...++.+++|+++++++|.++ |+.+
T Consensus 92 ~Lat~flHLLp~a~e~l~~~cl-----------~~----~~~--~~yP~~~~i~~~g~~l~~liE~~~~~~~~ 147 (337)
T PLN02159 92 ILGTGFMHVLPDSFEMLSSKCL-----------ED----NPW--HKFPFAGFVAMLSGLVTLAIDSMATSLYT 147 (337)
T ss_pred hHHHHHHHhhhHHHHhhhchhh-----------cC----CCc--ccCchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4667899999999952211000 00 000 012458899999999999999987 4553
No 17
>PRK01844 hypothetical protein; Provisional
Probab=49.57 E-value=14 Score=28.06 Aligned_cols=26 Identities=31% Similarity=0.677 Sum_probs=13.3
Q ss_pred hhHHHHHHHHH--------HHHHHHHHH-HHHhcC
Q 025904 49 SVGISVLAGIV--------LFLIVEKIV-RYVEEN 74 (246)
Q Consensus 49 ~vGL~VL~Giv--------~Fl~vEK~v-Ril~g~ 74 (246)
++|+||+.+|+ .||+.-|.+ ++++.+
T Consensus 2 ~~~~~I~l~I~~li~G~~~Gff~ark~~~k~lk~N 36 (72)
T PRK01844 2 PIWLGILVGVVALVAGVALGFFIARKYMMNYLQKN 36 (72)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 35566554443 456655544 455544
No 18
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=33.25 E-value=24 Score=33.26 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=20.4
Q ss_pred HHHHHhhhccchhhhHHHHhhhh
Q 025904 184 LNLFSDGVHNFTDGMALGSAFLL 206 (246)
Q Consensus 184 l~l~~d~~HNf~dGlaigasf~~ 206 (246)
|.+++|+.|++.|=++++.++.+
T Consensus 48 laLLADa~Hml~D~~al~lal~A 70 (296)
T COG1230 48 LALLADALHMLSDALALLLALIA 70 (296)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHH
Confidence 66899999999999999888764
No 19
>PF15183 MRAP: Melanocortin-2 receptor accessory protein family
Probab=29.42 E-value=50 Score=26.03 Aligned_cols=14 Identities=7% Similarity=0.289 Sum_probs=7.3
Q ss_pred chhHHHHHHHHHHH
Q 025904 48 LSVGISVLAGIVLF 61 (246)
Q Consensus 48 l~vGL~VL~Giv~F 61 (246)
.+|||++|++|++|
T Consensus 42 FWv~LA~FV~~lF~ 55 (90)
T PF15183_consen 42 FWVSLAAFVVFLFL 55 (90)
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555555443
No 20
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=28.02 E-value=50 Score=25.98 Aligned_cols=22 Identities=18% Similarity=0.319 Sum_probs=13.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHH
Q 025904 47 DLSVGISVLAGIVLFLIVEKIV 68 (246)
Q Consensus 47 ~l~vGL~VL~Giv~Fl~vEK~v 68 (246)
++|--++||+||++||++=-++
T Consensus 47 h~WRN~GIli~f~i~f~~~~~~ 68 (103)
T PF06422_consen 47 HRWRNFGILIAFWIFFIVLTLL 68 (103)
T ss_pred chhhhHHHHHHHHHHHHHHHHH
Confidence 3444467777777766654444
No 21
>PF03620 IBV_3C: IBV 3C protein; InterPro: IPR005296 These proteins are the product of ORF 3C from Infectious bronchitis virus. Currently, the function of this protein remains unknown.
Probab=23.72 E-value=1.2e+02 Score=24.00 Aligned_cols=27 Identities=15% Similarity=0.298 Sum_probs=23.1
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHh
Q 025904 46 QDLSVGISVLAGIVLFLIVEKIVRYVE 72 (246)
Q Consensus 46 ~~l~vGL~VL~Giv~Fl~vEK~vRil~ 72 (246)
....-+|.||.||++.+++-|.+...-
T Consensus 13 G~Flt~lYv~~gfialYllgk~LqaFv 39 (93)
T PF03620_consen 13 GSFLTALYVLLGFIALYLLGKALQAFV 39 (93)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457789999999999999999986554
No 22
>PRK12554 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=22.85 E-value=93 Score=28.94 Aligned_cols=38 Identities=21% Similarity=0.049 Sum_probs=28.4
Q ss_pred HhhhhcccchhHHHHHHHHHhhcccccccchHHHHHHHHHhcCCC
Q 025904 202 SAFLLYGSVGGWSRTLFLLAHEIPQEVGFHLSVYLIVNGILLCPL 246 (246)
Q Consensus 202 asf~~~~~~~G~~ttlai~lHeiP~eigd~~~~al~~~~l~~~p~ 246 (246)
.|..-..++.|.+++.+.++ |..|..|.-+.|+.++|.
T Consensus 162 ~AliPGiSRSG~TI~a~l~~-------G~~r~~Aa~fSFllsiP~ 199 (276)
T PRK12554 162 LALIPGVSRSGATIIAGLLL-------GLTREAAARFSFLLAIPA 199 (276)
T ss_pred HHhccCCCCchHHHHHHHHc-------CCCHHHHHHHHHHHHHHH
Confidence 33344445678888888776 888999999999888873
No 23
>TIGR00753 undec_PP_bacA undecaprenyl-diphosphatase UppP. This is a family of small, highly hydrophobic proteins. Overexpression of this protein in Escherichia coli is associated with bacitracin resistance, and the protein was originally proposed to be an undecaprenol kinase and called bacA. It is now known to be an undecaprenyl pyrophosphate phosphatase (EC 3.6.1.27) and is renamed UppP.
Probab=22.69 E-value=96 Score=28.52 Aligned_cols=36 Identities=17% Similarity=0.073 Sum_probs=27.0
Q ss_pred hhhcccchhHHHHHHHHHhhcccccccchHHHHHHHHHhcCCC
Q 025904 204 FLLYGSVGGWSRTLFLLAHEIPQEVGFHLSVYLIVNGILLCPL 246 (246)
Q Consensus 204 f~~~~~~~G~~ttlai~lHeiP~eigd~~~~al~~~~l~~~p~ 246 (246)
..-..++.|.+++.+.++ |..|..|.-+.|+.++|.
T Consensus 158 liPGiSRSG~TI~a~l~~-------G~~r~~Aa~fSFllsiP~ 193 (255)
T TIGR00753 158 LIPGVSRSGSTISGGLFI-------GLNRKAAAEFSFLLAIPI 193 (255)
T ss_pred hccCCCCchHHHHHHHHc-------CCCHHHHHHHHHHHHHHH
Confidence 333445578887777775 888999999999888873
No 24
>PF15621 PROL5-SMR: Proline-rich submaxillary gland androgen-regulated family
Probab=22.45 E-value=44 Score=27.50 Aligned_cols=13 Identities=31% Similarity=0.373 Sum_probs=10.7
Q ss_pred cchhHHHHHHHHH
Q 025904 47 DLSVGISVLAGIV 59 (246)
Q Consensus 47 ~l~vGL~VL~Giv 59 (246)
.|.+|||||+|-+
T Consensus 5 ~li~GLw~Li~CF 17 (113)
T PF15621_consen 5 YLIFGLWALIGCF 17 (113)
T ss_pred ehHHHHHHHHHHc
Confidence 5789999999853
No 25
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=22.08 E-value=79 Score=29.05 Aligned_cols=35 Identities=23% Similarity=0.028 Sum_probs=27.0
Q ss_pred hhcccchhHHHHHHHHHhhcccccccchHHHHHHHHHhcCCC
Q 025904 205 LLYGSVGGWSRTLFLLAHEIPQEVGFHLSVYLIVNGILLCPL 246 (246)
Q Consensus 205 ~~~~~~~G~~ttlai~lHeiP~eigd~~~~al~~~~l~~~p~ 246 (246)
.-..++.|.+++.+.++ |..+.+|.-+.|+.++|.
T Consensus 159 ~PGiSRSG~Ti~~~l~~-------G~~r~~A~~fSFllsiP~ 193 (259)
T PF02673_consen 159 IPGISRSGATITAGLLL-------GLDREEAARFSFLLSIPA 193 (259)
T ss_pred CCCcChHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHH
Confidence 33345578877777765 889999999999998883
No 26
>PF08370 PDR_assoc: Plant PDR ABC transporter associated; InterPro: IPR013581 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This domain is found on the C terminus of ABC-2 type transporter domains (IPR013525 from INTERPRO). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents [] (see also IPR010929 from INTERPRO). The PDR family is characterised by a configuration in which the ABC domain is nearer the N terminus of the protein than the transmembrane domain [].
Probab=21.32 E-value=74 Score=23.56 Aligned_cols=22 Identities=14% Similarity=0.297 Sum_probs=17.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHH
Q 025904 47 DLSVGISVLAGIVLFLIVEKIV 68 (246)
Q Consensus 47 ~l~vGL~VL~Giv~Fl~vEK~v 68 (246)
=-++|+++|+|++++|-+==.+
T Consensus 28 WyWIgvgaL~G~~vlFNil~~l 49 (65)
T PF08370_consen 28 WYWIGVGALLGFIVLFNILFTL 49 (65)
T ss_pred EEeehHHHHHHHHHHHHHHHHH
Confidence 4789999999999888664444
No 27
>PRK00281 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=20.75 E-value=1.1e+02 Score=28.35 Aligned_cols=46 Identities=22% Similarity=0.202 Sum_probs=31.4
Q ss_pred chhhhHHHH----hhhhcccchhHHHHHHHHHhhcccccccchHHHHHHHHHhcCCC
Q 025904 194 FTDGMALGS----AFLLYGSVGGWSRTLFLLAHEIPQEVGFHLSVYLIVNGILLCPL 246 (246)
Q Consensus 194 f~dGlaiga----sf~~~~~~~G~~ttlai~lHeiP~eigd~~~~al~~~~l~~~p~ 246 (246)
+.|.+.||. |..-..++.|.+++.+.++ |..|..|.-+.|+.++|.
T Consensus 148 ~~~Al~IGl~Q~lAliPGiSRSG~TI~~~l~~-------G~~r~~Aa~fSFLlsiPa 197 (268)
T PRK00281 148 YKDALLIGLAQCLALIPGTSRSGATISGGLLL-------GLSREAAAEFSFLLAIPA 197 (268)
T ss_pred HHHHHHHHHHHHHHhCCCCCccHHHHHHHHHc-------CCCHHHHHHHHHHHHHHH
Confidence 444444443 3333445578888887775 888999999999888873
Done!