Query 025904
Match_columns 246
No_of_seqs 200 out of 537
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 20:15:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025904.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025904hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jy0_A Protease NS2-3; membran 37.1 12 0.00043 22.5 1.1 16 47-62 6-21 (27)
2 2lat_A Dolichyl-diphosphooligo 14.2 1.1E+02 0.0037 19.5 2.2 14 51-64 9-22 (37)
3 1rkl_A Dolichyl-diphosphooligo 14.1 1.1E+02 0.0038 19.4 2.2 15 50-64 8-22 (36)
4 2k21_A Potassium voltage-gated 12.1 2.3E+02 0.0077 22.9 4.0 28 46-73 50-77 (138)
5 2klu_A T-cell surface glycopro 10.1 1.8E+02 0.0061 21.0 2.5 12 52-63 20-31 (70)
6 2k1k_A Ephrin type-A receptor 10.0 1.9E+02 0.0064 18.2 2.3 11 51-61 23-33 (38)
7 2xde_A GAG polyprotein, HIV-1 8.8 1.6E+02 0.0054 24.1 2.0 15 62-76 127-141 (145)
8 3j1z_P YIIP, cation efflux fam 8.2 87 0.003 27.5 0.2 20 186-205 41-60 (306)
9 3h90_A Ferrous-iron efflux pum 7.3 78 0.0027 27.2 -0.5 21 185-205 31-51 (283)
10 2knc_B Integrin beta-3; transm 6.6 4.5E+02 0.015 18.8 3.5 18 51-69 19-36 (79)
No 1
>2jy0_A Protease NS2-3; membrane segment, HCV NS2 protein, membrane protein, viral protein; NMR {Synthetic}
Probab=37.05 E-value=12 Score=22.46 Aligned_cols=16 Identities=38% Similarity=0.563 Sum_probs=13.3
Q ss_pred cchhHHHHHHHHHHHH
Q 025904 47 DLSVGISVLAGIVLFL 62 (246)
Q Consensus 47 ~l~vGL~VL~Giv~Fl 62 (246)
..++|..||++|.+|-
T Consensus 6 aas~G~~vlv~lti~T 21 (27)
T 2jy0_A 6 AASAGGAVFVGLVLLT 21 (27)
T ss_dssp HHTTSSHHHHHHHHHH
T ss_pred HhhhhhHHHHHHHHHh
Confidence 4579999999998884
No 2
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=14.22 E-value=1.1e+02 Score=19.54 Aligned_cols=14 Identities=36% Similarity=0.641 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHH
Q 025904 51 GISVLAGIVLFLIV 64 (246)
Q Consensus 51 GL~VL~Giv~Fl~v 64 (246)
-++++.|+.+|++|
T Consensus 9 ~lan~lG~~~~~LI 22 (37)
T 2lat_A 9 IFANMLGVSLFLLV 22 (37)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 46677777777664
No 3
>1rkl_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 4 kDa subunit; membrane protein; NMR {Synthetic} SCOP: f.23.30.1
Probab=14.05 E-value=1.1e+02 Score=19.39 Aligned_cols=15 Identities=20% Similarity=0.547 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHHHHH
Q 025904 50 VGISVLAGIVLFLIV 64 (246)
Q Consensus 50 vGL~VL~Giv~Fl~v 64 (246)
--++.+.|+.+|++|
T Consensus 8 ~~lan~lG~~~~~LI 22 (36)
T 1rkl_A 8 NSLAITFGIVMMTLI 22 (36)
T ss_dssp GHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 347788888888765
No 4
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=12.10 E-value=2.3e+02 Score=22.95 Aligned_cols=28 Identities=11% Similarity=0.275 Sum_probs=23.8
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhc
Q 025904 46 QDLSVGISVLAGIVLFLIVEKIVRYVEE 73 (246)
Q Consensus 46 ~~l~vGL~VL~Giv~Fl~vEK~vRil~g 73 (246)
.+-.+=+.++.||+.||++==+|.+++.
T Consensus 50 ~~~ylYIL~vmgffgff~~GImLsYiRS 77 (138)
T 2k21_A 50 KLEALYVLMVLGFFGFFTLGIMLSYIRS 77 (138)
T ss_dssp SSTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CceeehHHHHHHHHHHHHHHHHHHHhHh
Confidence 4556778899999999999999998865
No 5
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=10.15 E-value=1.8e+02 Score=21.00 Aligned_cols=12 Identities=17% Similarity=0.551 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 025904 52 ISVLAGIVLFLI 63 (246)
Q Consensus 52 L~VL~Giv~Fl~ 63 (246)
+.+|+|+.+|+.
T Consensus 20 lll~~glcI~cc 31 (70)
T 2klu_A 20 LLLFIGLGIFFS 31 (70)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 334444444433
No 6
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=9.98 E-value=1.9e+02 Score=18.20 Aligned_cols=11 Identities=45% Similarity=0.990 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 025904 51 GISVLAGIVLF 61 (246)
Q Consensus 51 GL~VL~Giv~F 61 (246)
|+.++++++.|
T Consensus 23 gv~li~~l~~~ 33 (38)
T 2k1k_A 23 GAALLLGILVF 33 (38)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444444433
No 7
>2xde_A GAG polyprotein, HIV-1 capsid; AIDS, viral protein; HET: 1B0; 1.40A {Human immunodeficiency virus 1} PDB: 1m9y_C 2x2d_D* 1m9x_C 1m9e_C 1m9f_C 1afv_A 1gwp_A 2pxr_C 2gol_B 1m9c_C 2x83_A 4e91_A* 4e92_A* 2pwo_A 2pwm_A 2gon_A 1ak4_C 2jpr_A* 1m9d_C 4dga_C ...
Probab=8.76 E-value=1.6e+02 Score=24.14 Aligned_cols=15 Identities=33% Similarity=0.321 Sum_probs=9.2
Q ss_pred HHHHHHHHHHhcCCC
Q 025904 62 LIVEKIVRYVEENSG 76 (246)
Q Consensus 62 l~vEK~vRil~g~~g 76 (246)
+.+.|+||+..|++.
T Consensus 127 lgLnkivrmy~~~~~ 141 (145)
T 2xde_A 127 LGLNKIVRMYSGGHH 141 (145)
T ss_dssp HHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCcc
Confidence 346999999998863
No 8
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=8.16 E-value=87 Score=27.46 Aligned_cols=20 Identities=20% Similarity=0.348 Sum_probs=16.6
Q ss_pred HHHhhhccchhhhHHHHhhh
Q 025904 186 LFSDGVHNFTDGMALGSAFL 205 (246)
Q Consensus 186 l~~d~~HNf~dGlaigasf~ 205 (246)
|++|++||+.|-++...+++
T Consensus 41 LlaDa~hsl~D~~s~~i~l~ 60 (306)
T 3j1z_P 41 MLASLTDSFADTLASIINFI 60 (306)
T ss_dssp CCTHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 67899999999988776665
No 9
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=7.30 E-value=78 Score=27.17 Aligned_cols=21 Identities=19% Similarity=0.138 Sum_probs=17.0
Q ss_pred HHHHhhhccchhhhHHHHhhh
Q 025904 185 NLFSDGVHNFTDGMALGSAFL 205 (246)
Q Consensus 185 ~l~~d~~HNf~dGlaigasf~ 205 (246)
.+++|++||+.|-++...+++
T Consensus 31 allaDa~hsl~D~~~~~~~l~ 51 (283)
T 3h90_A 31 SILAALVDSLVDIGASLTNLL 51 (283)
T ss_dssp CCCSTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 378899999999988876665
No 10
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=6.58 E-value=4.5e+02 Score=18.83 Aligned_cols=18 Identities=33% Similarity=0.558 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025904 51 GISVLAGIVLFLIVEKIVR 69 (246)
Q Consensus 51 GL~VL~Giv~Fl~vEK~vR 69 (246)
|..||+|++++++. |++.
T Consensus 19 ~gilliGllllliw-k~~~ 36 (79)
T 2knc_B 19 GAILLIGLAALLIW-KLLI 36 (79)
T ss_dssp HHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHH-HHHH
Confidence 33445555554444 4443
Done!