Query 025904
Match_columns 246
No_of_seqs 200 out of 537
Neff 4.9
Searched_HMMs 13730
Date Mon Mar 25 20:15:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025904.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025904hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtz1 f.17.5.1 (Z:1-62) Phot 15.0 34 0.0025 22.6 1.7 18 47-64 45-62 (62)
2 d2gnoa1 a.80.1.1 (A:209-306) g 13.5 42 0.0031 23.3 2.0 18 56-73 36-53 (98)
3 d1rzhh2 f.23.10.1 (H:11-35) Ph 13.1 69 0.005 17.4 2.3 15 49-63 4-18 (26)
4 d1rh5c_ f.23.29.1 (C:) Sec-bet 9.8 1.3E+02 0.0093 16.8 2.8 17 54-70 13-29 (32)
5 d1x4pa1 a.217.1.1 (A:8-60) Arg 5.5 1.3E+02 0.0094 18.8 1.6 12 63-74 3-15 (53)
6 d2qfia2 f.59.1.1 (A:5-208) Fer 5.3 55 0.004 24.7 -0.5 23 184-206 33-55 (204)
7 d1alna2 c.97.1.1 (A:151-294) T 4.6 98 0.0071 23.0 0.6 11 5-15 6-16 (144)
8 d1k8ua_ a.39.1.2 (A:) Calcycli 4.3 1.8E+02 0.013 19.2 1.8 15 213-227 75-89 (89)
9 d2e74e1 f.23.24.1 (E:1-32) Pet 4.3 3.3E+02 0.024 14.9 2.7 19 182-205 7-25 (32)
10 d1qled_ f.23.8.1 (D:) Bacteria 4.1 2.7E+02 0.02 16.7 2.4 9 55-63 31-39 (43)
No 1
>d2axtz1 f.17.5.1 (Z:1-62) Photosystem II reaction center protein Z, PsbZ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=14.97 E-value=34 Score=22.63 Aligned_cols=18 Identities=22% Similarity=0.628 Sum_probs=15.2
Q ss_pred cchhHHHHHHHHHHHHHH
Q 025904 47 DLSVGISVLAGIVLFLIV 64 (246)
Q Consensus 47 ~l~vGL~VL~Giv~Fl~v 64 (246)
-+++||..+.||+-||++
T Consensus 45 ~~W~~LV~lvgilNsfVv 62 (62)
T d2axtz1 45 GLWIALVLVVGVLNFFVV 62 (62)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHhhheeeC
Confidence 478899999999998874
No 2
>d2gnoa1 a.80.1.1 (A:209-306) gamma subunit {Thermotoga maritima [TaxId: 2336]}
Probab=13.55 E-value=42 Score=23.35 Aligned_cols=18 Identities=22% Similarity=0.552 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 025904 56 AGIVLFLIVEKIVRYVEE 73 (246)
Q Consensus 56 ~Giv~Fl~vEK~vRil~g 73 (246)
.|==+|+++.|++||+-.
T Consensus 36 tg~daflliq~~~riilh 53 (98)
T d2gnoa1 36 TGKDAFLLIQRLTRIILH 53 (98)
T ss_dssp CTHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHhcc
Confidence 455689999999999853
No 3
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=13.10 E-value=69 Score=17.45 Aligned_cols=15 Identities=27% Similarity=0.089 Sum_probs=9.5
Q ss_pred hhHHHHHHHHHHHHH
Q 025904 49 SVGISVLAGIVLFLI 63 (246)
Q Consensus 49 ~vGL~VL~Giv~Fl~ 63 (246)
++.+|.|-+|++.++
T Consensus 4 slaiw~fw~ffalli 18 (26)
T d1rzhh2 4 SLAIYSFWIFLAGLI 18 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 456777777666554
No 4
>d1rh5c_ f.23.29.1 (C:) Sec-beta subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=9.77 E-value=1.3e+02 Score=16.81 Aligned_cols=17 Identities=41% Similarity=0.735 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 025904 54 VLAGIVLFLIVEKIVRY 70 (246)
Q Consensus 54 VL~Giv~Fl~vEK~vRi 70 (246)
|++=-++|+++|-++.|
T Consensus 13 vigvtvafviieailty 29 (32)
T d1rh5c_ 13 VIGVTVAFVIIEAILTY 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred EEEEEEehhhHHHHHhh
Confidence 34445789999998865
No 5
>d1x4pa1 a.217.1.1 (A:8-60) Arginine/serine-rich-splicing factor 14 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.48 E-value=1.3e+02 Score=18.83 Aligned_cols=12 Identities=25% Similarity=0.648 Sum_probs=8.5
Q ss_pred HHHHHH-HHHhcC
Q 025904 63 IVEKIV-RYVEEN 74 (246)
Q Consensus 63 ~vEK~v-Ril~g~ 74 (246)
++|++| ||+.|.
T Consensus 3 tIeqlV~~ii~G~ 15 (53)
T d1x4pa1 3 TIDQLVKRVIEGS 15 (53)
T ss_dssp HHHHHHHHHHHTC
T ss_pred hHHHHHHHHHcCC
Confidence 578888 666654
No 6
>d2qfia2 f.59.1.1 (A:5-208) Ferrous-iron efflux pump FieF {Escherichia coli [TaxId: 562]}
Probab=5.32 E-value=55 Score=24.73 Aligned_cols=23 Identities=17% Similarity=0.179 Sum_probs=18.6
Q ss_pred HHHHHhhhccchhhhHHHHhhhh
Q 025904 184 LNLFSDGVHNFTDGMALGSAFLL 206 (246)
Q Consensus 184 l~l~~d~~HNf~dGlaigasf~~ 206 (246)
+.+++|++||+.|-++....++.
T Consensus 33 ~allada~~s~~D~~~~~~~l~~ 55 (204)
T d2qfia2 33 VSILAALVDSLVDIGASLTNLLV 55 (204)
T ss_dssp SCCCCCCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34789999999999988777664
No 7
>d1alna2 c.97.1.1 (A:151-294) Two-domain cytidine deaminase {Escherichia coli [TaxId: 562]}
Probab=4.58 E-value=98 Score=23.03 Aligned_cols=11 Identities=55% Similarity=0.875 Sum_probs=9.1
Q ss_pred hhhhhcccccC
Q 025904 5 AFLHQLPHAFG 15 (246)
Q Consensus 5 aFLHLLPHaf~ 15 (246)
++-+|||++|+
T Consensus 6 ~l~~~LP~~Fg 16 (144)
T d1alna2 6 ALRDYLPDAFG 16 (144)
T ss_dssp EHHHHSTTCCC
T ss_pred hHHHhCCCCCC
Confidence 35689999996
No 8
>d1k8ua_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), s100a6 [TaxId: 9606]}
Probab=4.33 E-value=1.8e+02 Score=19.20 Aligned_cols=15 Identities=20% Similarity=0.219 Sum_probs=8.9
Q ss_pred HHHHHHHHHhhcccc
Q 025904 213 WSRTLFLLAHEIPQE 227 (246)
Q Consensus 213 ~~ttlai~lHeiP~e 227 (246)
++..+|+++||..++
T Consensus 75 l~~~la~~c~~~~~~ 89 (89)
T d1k8ua_ 75 FLGALALIYNEALKG 89 (89)
T ss_dssp HHHHHHHHHCGGGCC
T ss_pred HHHHHHHHHHHHhcC
Confidence 445666677766543
No 9
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=4.28 E-value=3.3e+02 Score=14.93 Aligned_cols=19 Identities=26% Similarity=0.375 Sum_probs=9.7
Q ss_pred HHHHHHHhhhccchhhhHHHHhhh
Q 025904 182 GYLNLFSDGVHNFTDGMALGSAFL 205 (246)
Q Consensus 182 g~l~l~~d~~HNf~dGlaigasf~ 205 (246)
-|+..++.|+ |+|+|.-|.
T Consensus 7 fyivfialff-----giavgiifa 25 (32)
T d2e74e1 7 FYIVFIALFF-----GIAVGIIFA 25 (32)
T ss_dssp HHHHHHHHHH-----HHHHHHHHH
T ss_pred HHHHHHHHHH-----HHHhhheee
Confidence 3444455443 666665554
No 10
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=4.15 E-value=2.7e+02 Score=16.69 Aligned_cols=9 Identities=22% Similarity=0.538 Sum_probs=4.0
Q ss_pred HHHHHHHHH
Q 025904 55 LAGIVLFLI 63 (246)
Q Consensus 55 L~Giv~Fl~ 63 (246)
++.|+.||+
T Consensus 31 ~i~~liflA 39 (43)
T d1qled_ 31 SIAVLVFLA 39 (43)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444444
Done!