BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025905
         (246 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A1DP58|UTP10_NEOFI U3 small nucleolar RNA-associated protein 10 OS=Neosartorya
           fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 /
           NRRL 181) GN=utp10 PE=3 SV=1
          Length = 1814

 Score = 32.3 bits (72), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 26/48 (54%)

Query: 55  LTAGSSDTESQYPLYKRLASVFHESVTSTASCGAFSNIASLNEDDDLK 102
           L  GS  +    PL++RLA  F  +V S   C  FS++A+L + +  K
Sbjct: 496 LFKGSFLSTQSIPLFERLAQAFTLAVGSNEKCQTFSDLAALGKSEATK 543


>sp|Q9SJC6|NUDT5_ARATH Nudix hydrolase 5 OS=Arabidopsis thaliana GN=NUDT5 PE=2 SV=3
          Length = 302

 Score = 32.0 bits (71), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 13/129 (10%)

Query: 98  DDDLKKREDWGK--LVLKEGSEMIELLKTV---NFELHVQEPYFTQLKDGLKTVEGRCAV 152
           D  LK  +D GK  + +K  SE+  L+ T     F  H  E  +  L   L         
Sbjct: 60  DVSLKAWKDQGKKGIWIKLPSELSSLVDTAIKKGFTYHHAENEYVMLTFWLPEPPSTLPC 119

Query: 153 GDYNRIGSGSLILCNKCLVLKVQDVHGYLSFSEMLQAESLAKVLPGIKTIDEGVQVYRRF 212
              +RIG G+ +L     +L VQ+  GY       + +++ KV  G  TI EG  ++   
Sbjct: 120 NASHRIGIGAFVLNKNGEMLVVQENSGY------FKDKNVWKVPTG--TIKEGESIWAGA 171

Query: 213 YTEEKEKTN 221
             E KE+T+
Sbjct: 172 VREVKEETD 180


>sp|Q2QL82|CTTB2_MICMU Cortactin-binding protein 2 OS=Microcebus murinus GN=CTTNBP2 PE=3
            SV=1
          Length = 1647

 Score = 31.6 bits (70), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 12/71 (16%)

Query: 13   DYTKCIEEALK-----------FILE-SHINQTLELDLGLSKDLCSFLLTHNVPLTAGSS 60
            D++K + +AL            + LE +  N T + D+GLS D    ++  +VP +AG S
Sbjct: 994  DFSKAVSQALTNHFQAISSDGWWSLEDTAFNNTADSDIGLSLDSVRAIMLGSVPWSAGQS 1053

Query: 61   DTESQYPLYKR 71
             T+S +   ++
Sbjct: 1054 FTQSPWDFMRK 1064


>sp|Q9SU14|NUDT7_ARATH Nudix hydrolase 7 OS=Arabidopsis thaliana GN=NUDT7 PE=1 SV=1
          Length = 282

 Score = 30.8 bits (68), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 63/134 (47%), Gaps = 11/134 (8%)

Query: 93  ASLNEDDDLKKREDWGKLVLKEGSEMIELLKTVNFELHVQEPYFTQLKDGLKTVEGRCAV 152
           ASL+   +  K+  W KL L   + ++E   +  F  H  EP +  L   +         
Sbjct: 40  ASLSHWREEGKKGIWIKLPLGLAN-LVEAAVSEGFRYHHAEPEYLMLVSWISETPDTIPA 98

Query: 153 GDYNRIGSGSLILC-NKCLVLKVQDVHGYLSFSEMLQAESLAKVLPGIKTIDEGVQVYRR 211
              + +G+G+L++  N   VL VQ+  G+       + +++ K+  G+  I+EG  ++  
Sbjct: 99  NASHVVGAGALVINKNTKEVLVVQERSGF------FKDKNVWKLPTGV--INEGEDIWTG 150

Query: 212 FYTEEKEKTNGVIA 225
              E +E+T G+IA
Sbjct: 151 VAREVEEET-GIIA 163


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.134    0.388 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,260,102
Number of Sequences: 539616
Number of extensions: 3471900
Number of successful extensions: 9060
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 9058
Number of HSP's gapped (non-prelim): 8
length of query: 246
length of database: 191,569,459
effective HSP length: 114
effective length of query: 132
effective length of database: 130,053,235
effective search space: 17167027020
effective search space used: 17167027020
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)