Query 025907
Match_columns 246
No_of_seqs 139 out of 1342
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 10:54:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025907.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025907hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0819 Annexin [Intracellular 100.0 1.1E-65 2.4E-70 436.0 19.1 237 4-243 74-320 (321)
2 KOG0819 Annexin [Intracellular 100.0 1.8E-53 4E-58 361.4 19.5 223 17-244 15-246 (321)
3 PF00191 Annexin: Annexin; In 99.7 9.2E-18 2E-22 114.0 8.7 66 173-239 1-66 (66)
4 PF00191 Annexin: Annexin; In 99.7 1.8E-16 3.9E-21 107.6 7.3 66 96-163 1-66 (66)
5 smart00335 ANX Annexin repeats 99.4 2.4E-13 5.2E-18 88.1 6.2 53 186-239 1-53 (53)
6 smart00335 ANX Annexin repeats 99.4 6.3E-13 1.4E-17 86.1 5.9 51 112-162 2-52 (53)
7 PF14003 YlbE: YlbE-like prote 58.3 16 0.00034 24.4 3.2 30 121-150 17-46 (65)
8 PF14003 YlbE: YlbE-like prote 55.2 17 0.00036 24.2 3.0 33 41-73 13-45 (65)
9 COG5118 BDP1 Transcription ini 46.4 26 0.00057 31.6 3.7 61 95-157 370-430 (507)
10 PF13720 Acetyltransf_11: Udp 39.8 26 0.00057 24.4 2.2 27 47-73 27-55 (83)
11 KOG1086 Cytosolic sorting prot 35.0 1.8E+02 0.0039 27.1 7.1 105 90-214 25-138 (594)
12 COG4800 Predicted transcriptio 28.8 2E+02 0.0043 22.4 5.5 87 155-244 16-125 (170)
13 KOG0859 Synaptobrevin/VAMP-lik 26.3 75 0.0016 26.1 3.0 32 204-236 80-111 (217)
14 PRK02866 cyanate hydratase; Va 25.3 2.7E+02 0.0058 21.8 5.8 87 135-227 12-108 (147)
15 smart00717 SANT SANT SWI3, AD 24.3 1.5E+02 0.0033 16.9 4.9 36 21-56 6-42 (49)
16 PF13043 DUF3903: Domain of un 23.4 79 0.0017 18.4 1.9 17 204-220 10-26 (40)
17 PF12098 DUF3574: Protein of u 22.8 71 0.0015 23.4 2.1 19 49-67 73-91 (104)
18 KOG0031 Myosin regulatory ligh 22.3 3.6E+02 0.0078 21.4 6.0 62 148-213 73-145 (171)
19 COG5664 Predicted secreted Zn- 21.7 2.6E+02 0.0056 22.6 5.1 38 203-243 164-201 (201)
20 PF00249 Myb_DNA-binding: Myb- 21.6 1.9E+02 0.0042 17.2 5.7 35 21-55 6-42 (48)
21 PHA02666 hypothetical protein; 20.8 87 0.0019 26.1 2.4 26 1-38 1-26 (287)
22 KOG2027 Spindle pole body prot 20.4 2.9E+02 0.0063 25.3 5.9 31 125-155 96-126 (388)
No 1
>KOG0819 consensus Annexin [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-65 Score=435.97 Aligned_cols=237 Identities=37% Similarity=0.557 Sum_probs=230.0
Q ss_pred ChhhHHHHHHHHcCCChHHHHHHHHHHHhcCCCCHHHHHHHHhCCCHHHHHHHHHHHHHhhccCHHHHhhccCCCCcccc
Q 025907 4 FLPKNCAALDVWMLGSHERDAAVARQALEESVVNFKALIEILVGRKSSHIALIKQAYQTRYKRHLDQDIANIEPPHPYQK 83 (246)
Q Consensus 4 ~~~~~~~~l~~l~~~~~~~da~~L~~A~~g~g~de~~li~iL~~rs~~e~~~I~~~Y~~~~~~~L~~~i~~~~~~g~~~~ 83 (246)
++|+|++++++|+.||+++||++|++||+|.|||+.+||||||+|||.|+++|+++|+..|+++|++||. +++||+|++
T Consensus 74 LsG~Fe~~i~al~~~p~~~DA~~l~~amkg~gtde~vlIEIlcTRT~~el~~i~~aY~~~y~~sLEeDI~-s~TSG~frk 152 (321)
T KOG0819|consen 74 LSGDFERAIVALMKPPAEYDAKELKKAMKGLGTDEKVLIEILCTRTNEELRAIRQAYQELYKKSLEEDIA-SDTSGDFRK 152 (321)
T ss_pred hCccHHHHHHHHcCCHHHhHHHHHHHHHhccCcchhhheeeeccCCHHHHHHHHHHHHHHHcccHHHHhh-hccCchHHH
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred cc----------ccccchhHHHHHHHHHHhhcCCCCCCChHHHHHHHhhcCCHHHHHHHHHHHHHHhCCCHHHHHhhcCC
Q 025907 84 AH----------NADVSQHVAKCDAKRLYETGEGSPGAAEKAVVLEIFSKRSIPQMKLTFSCYKHIYGHDYTKSLKRGNS 153 (246)
Q Consensus 84 ~~----------~~~~~~~~~~~da~~L~~A~~g~~g~td~~~li~Il~~rs~~~l~~I~~~Y~~~~g~~L~~~I~~~~~ 153 (246)
.+ ...++...++.||+.|++|++.+|| ||+..++.||++||.+|++.+++.|+..+|+++++.|+.+++
T Consensus 153 lLv~L~~~~R~e~~~vd~~la~~dA~~L~~Age~k~g-tde~~~~~Il~tRs~~qL~~vf~~y~~~~g~diek~I~~e~~ 231 (321)
T KOG0819|consen 153 LLVSLVQGNRDEGDRVDDALAKQDAQDLYEAGEKKWG-TDEDKFIRILTTRSKAQLRLVFEEYQRISGKDIEKSIKEEFS 231 (321)
T ss_pred HHHHHHhcCCccCCCcCHHHHHHHHHHHHHHhhhhcc-CcHHHHHHHHHhCCHHHHHHHHHHHHHhcchhHHHHHhhccC
Confidence 32 2357889999999999999999998 999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHhhCCchHHHHHHHHHhhcCCCCCHHHHHHHHHhCCHHHHHHHHHHHHHhhCccHHHHhhccCCChHHH
Q 025907 154 TDFEDALKMVVKCILNPPNYYAKTLYASIKGTRVDKAAVARVLVSRAEVDMDEIQRIFKKKYGMELRDAICESIPSGDYR 233 (246)
Q Consensus 154 g~~~~~l~~~~~~~~~~~~~~A~~L~~a~~g~gtd~~~li~il~~rs~~~l~~i~~~Y~~~yg~~L~~~I~~~~~~G~~~ 233 (246)
|+++++|++++.|.+|||.|||+.||.||+|.|||+.+||||+|+||+.||..|+.+|+++||+||.++|..+ |||||+
T Consensus 232 gd~~~~llaiv~c~~n~~~yFA~~L~~amkg~GTdd~~LiRI~VsRsEiDl~~Ik~ef~~~Y~ksL~~~I~~d-tsGdY~ 310 (321)
T KOG0819|consen 232 GDFEKLLLAIVKCIRNPPAYFAERLRKAMKGLGTDDKTLIRIVVSRSEIDLLDIKEEFQRKYGKSLYSAIKGD-TSGDYK 310 (321)
T ss_pred chHHHHHHHHHHHHcCHHHHHHHHHHHHHhccCCCccceeeeeeeHHHhhHHHHHHHHHHHhCccHHHHHhhh-ccchHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 899999
Q ss_pred HHHHHHhccc
Q 025907 234 DFLVALATKA 243 (246)
Q Consensus 234 ~~Ll~l~~~~ 243 (246)
++|++||++.
T Consensus 311 ~~LlaL~g~~ 320 (321)
T KOG0819|consen 311 KALLALLGGD 320 (321)
T ss_pred HHHHHHhCCC
Confidence 9999999875
No 2
>KOG0819 consensus Annexin [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-53 Score=361.35 Aligned_cols=223 Identities=23% Similarity=0.359 Sum_probs=211.9
Q ss_pred CCChHHHHHHHHHHHhcCCCCHHHHHHHHhCCCHHHHHHHHHHHHHhhccCHHHHhhccCCCCccccccccccchhHHHH
Q 025907 17 LGSHERDAAVARQALEESVVNFKALIEILVGRKSSHIALIKQAYQTRYKRHLDQDIANIEPPHPYQKAHNADVSQHVAKC 96 (246)
Q Consensus 17 ~~~~~~da~~L~~A~~g~g~de~~li~iL~~rs~~e~~~I~~~Y~~~~~~~L~~~i~~~~~~g~~~~~~~~~~~~~~~~~ 96 (246)
-+.|..||+.|++||+|+||||.+||+||++|||+|||.|+++|+++||++|.++|+ +++||+|++.. ..|..+|++.
T Consensus 15 ~f~p~~DAe~L~kA~kG~Gtde~aII~iL~~Rsn~QRq~I~~ayk~~ygkDLi~~Lk-~ELsG~Fe~~i-~al~~~p~~~ 92 (321)
T KOG0819|consen 15 VFDPVQDAEQLRKAMKGFGTDEQAIIDILTHRSNAQRQLIRAAYKTMYGKDLIKDLK-SELSGDFERAI-VALMKPPAEY 92 (321)
T ss_pred CCChHHHHHHHHHHHhcCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHhHHHHHHHH-HHhCccHHHHH-HHHcCCHHHh
Confidence 346889999999999999999999999999999999999999999999999999999 99999999975 4678899999
Q ss_pred HHHHHHhhcCCCCCCChHHHHHHHhhcCCHHHHHHHHHHHHHHhCCCHHHHHhhcCCCchHHHHHHHHHhhCC-------
Q 025907 97 DAKRLYETGEGSPGAAEKAVVLEIFSKRSIPQMKLTFSCYKHIYGHDYTKSLKRGNSTDFEDALKMVVKCILN------- 169 (246)
Q Consensus 97 da~~L~~A~~g~~g~td~~~li~Il~~rs~~~l~~I~~~Y~~~~g~~L~~~I~~~~~g~~~~~l~~~~~~~~~------- 169 (246)
||+.|++|++|. +||++++|||+|+|||.|+++|+++|+..|+++|+++|.++.||+|+++|+.++++.|+
T Consensus 93 DA~~l~~amkg~--gtde~vlIEIlcTRT~~el~~i~~aY~~~y~~sLEeDI~s~TSG~frklLv~L~~~~R~e~~~vd~ 170 (321)
T KOG0819|consen 93 DAKELKKAMKGL--GTDEKVLIEILCTRTNEELRAIRQAYQELYKKSLEEDIASDTSGDFRKLLVSLVQGNRDEGDRVDD 170 (321)
T ss_pred HHHHHHHHHhcc--CcchhhheeeeccCCHHHHHHHHHHHHHHHcccHHHHhhhccCchHHHHHHHHHhcCCccCCCcCH
Confidence 999999999998 69999999999999999999999999999999999999999999999999999999985
Q ss_pred -chHHHHHHHHHhhcC-CCCCHHHHHHHHHhCCHHHHHHHHHHHHHhhCccHHHHhhccCCChHHHHHHHHHhcccc
Q 025907 170 -PPNYYAKTLYASIKG-TRVDKAAVARVLVSRAEVDMDEIQRIFKKKYGMELRDAICESIPSGDYRDFLVALATKAS 244 (246)
Q Consensus 170 -~~~~~A~~L~~a~~g-~gtd~~~li~il~~rs~~~l~~i~~~Y~~~yg~~L~~~I~~~~~~G~~~~~Ll~l~~~~~ 244 (246)
.+..||..|++|.++ +|||+..+++||++||..||+.+++.|++.+|+++++.|+++ .+|+|+++|++++.+.+
T Consensus 171 ~la~~dA~~L~~Age~k~gtde~~~~~Il~tRs~~qL~~vf~~y~~~~g~diek~I~~e-~~gd~~~~llaiv~c~~ 246 (321)
T KOG0819|consen 171 ALAKQDAQDLYEAGEKKWGTDEDKFIRILTTRSKAQLRLVFEEYQRISGKDIEKSIKEE-FSGDFEKLLLAIVKCIR 246 (321)
T ss_pred HHHHHHHHHHHHHhhhhccCcHHHHHHHHHhCCHHHHHHHHHHHHHhcchhHHHHHhhc-cCchHHHHHHHHHHHHc
Confidence 357899999999986 589999999999999999999999999999999999999999 59999999999998754
No 3
>PF00191 Annexin: Annexin; InterPro: IPR018502 The annexins (or lipocortins) are a family of proteins that bind to phospholipids in a calcium-dependent manner []. They are distributed ubiquitously in different tissues and cell types of higher and lower eukaryotes, including mammals, fish, birds, Drosophila melanogaster (Fruit fly), Xenopus laevis (African clawed frog), Caenorhabditis elegans , Dictyostelium discoideum (Slime mold) and Neurospora crassa [, ]. Annexins are absent from yeasts and prokaryotes []. The plant annexins are somewhat distinct from those found in other taxa []. Most eukaryotic species have 1-20 annexin (ANX) genes. All annexins share a core domain made up of four similar repeats, each approximately 70 amino acids long []. Each individual annexin repeat (sometimes referred to as endonexin folds) is folded into five alpha-helices, and in turn are wound into a right-handed super-helix; they usually contain a characteristic 'type 2' motif for binding calcium ions with the sequence 'GxGT-[38 residues]-D/E'. Animal and fungal annexins also have variable amino-terminal domains. The core domains of most vertebrate annexins have been analysed by X-ray crystallography, revealing conservation of their secondary and tertiary structures despite only 45-55% amino-acid identity among individual members. The four repeats pack into a structure that resembles a flattened disc, with a slightly convex surface on which the Ca 2+ -binding loops are located and a concave surface at which the amino and carboxyl termini come into close apposition. Annexins are traditionally thought of as calcium-dependent phospholipid-binding proteins, but recent work suggests a more complex set of functions. The famiy has been linked with inhibition of phospholipase activity, exocytosis and endoctyosis, signal transduction, organisation of the extracellular matrix, resistance to reactive oxygen species and DNA replication [].; GO: 0005509 calcium ion binding, 0005544 calcium-dependent phospholipid binding; PDB: 1N44_A 1BC1_A 2IE6_A 2H0M_A 1A8B_A 2H0K_A 1BCW_A 1BCZ_A 1N42_A 1BC0_A ....
Probab=99.74 E-value=9.2e-18 Score=113.99 Aligned_cols=66 Identities=35% Similarity=0.632 Sum_probs=63.2
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHhCCHHHHHHHHHHHHHhhCccHHHHhhccCCChHHHHHHHHH
Q 025907 173 YYAKTLYASIKGTRVDKAAVARVLVSRAEVDMDEIQRIFKKKYGMELRDAICESIPSGDYRDFLVAL 239 (246)
Q Consensus 173 ~~A~~L~~a~~g~gtd~~~li~il~~rs~~~l~~i~~~Y~~~yg~~L~~~I~~~~~~G~~~~~Ll~l 239 (246)
+||+.|++|++|+|+|+..+++|+++||+.|+..|+++|++.||++|.++|+++ ++|+|+++|++|
T Consensus 1 ~DA~~l~~a~~~~g~de~~li~Il~~rs~~ql~~i~~~Y~~~~g~~L~~~i~~e-~sGd~~~~Ll~l 66 (66)
T PF00191_consen 1 YDAELLHAALKGWGTDEDVLIEILCTRSPAQLRAIKQAYKKKYGKDLEEDIKKE-TSGDFEKLLLAL 66 (66)
T ss_dssp HHHHHHHHHHSSSSSTHHHHHHHHHHSTHHHHHHHHHHHHHHHSS-HHHHHHHH-STHHHHHHHHHH
T ss_pred CHHHHHHHHccCCCCChhHhhhHHhhhcccccceeehhhhhhhHHHHHHHHHHh-CCHHHHHHHHhC
Confidence 589999999999999999999999999999999999999999999999999999 699999999986
No 4
>PF00191 Annexin: Annexin; InterPro: IPR018502 The annexins (or lipocortins) are a family of proteins that bind to phospholipids in a calcium-dependent manner []. They are distributed ubiquitously in different tissues and cell types of higher and lower eukaryotes, including mammals, fish, birds, Drosophila melanogaster (Fruit fly), Xenopus laevis (African clawed frog), Caenorhabditis elegans , Dictyostelium discoideum (Slime mold) and Neurospora crassa [, ]. Annexins are absent from yeasts and prokaryotes []. The plant annexins are somewhat distinct from those found in other taxa []. Most eukaryotic species have 1-20 annexin (ANX) genes. All annexins share a core domain made up of four similar repeats, each approximately 70 amino acids long []. Each individual annexin repeat (sometimes referred to as endonexin folds) is folded into five alpha-helices, and in turn are wound into a right-handed super-helix; they usually contain a characteristic 'type 2' motif for binding calcium ions with the sequence 'GxGT-[38 residues]-D/E'. Animal and fungal annexins also have variable amino-terminal domains. The core domains of most vertebrate annexins have been analysed by X-ray crystallography, revealing conservation of their secondary and tertiary structures despite only 45-55% amino-acid identity among individual members. The four repeats pack into a structure that resembles a flattened disc, with a slightly convex surface on which the Ca 2+ -binding loops are located and a concave surface at which the amino and carboxyl termini come into close apposition. Annexins are traditionally thought of as calcium-dependent phospholipid-binding proteins, but recent work suggests a more complex set of functions. The famiy has been linked with inhibition of phospholipase activity, exocytosis and endoctyosis, signal transduction, organisation of the extracellular matrix, resistance to reactive oxygen species and DNA replication [].; GO: 0005509 calcium ion binding, 0005544 calcium-dependent phospholipid binding; PDB: 1N44_A 1BC1_A 2IE6_A 2H0M_A 1A8B_A 2H0K_A 1BCW_A 1BCZ_A 1N42_A 1BC0_A ....
Probab=99.67 E-value=1.8e-16 Score=107.59 Aligned_cols=66 Identities=32% Similarity=0.490 Sum_probs=61.6
Q ss_pred HHHHHHHhhcCCCCCCChHHHHHHHhhcCCHHHHHHHHHHHHHHhCCCHHHHHhhcCCCchHHHHHHH
Q 025907 96 CDAKRLYETGEGSPGAAEKAVVLEIFSKRSIPQMKLTFSCYKHIYGHDYTKSLKRGNSTDFEDALKMV 163 (246)
Q Consensus 96 ~da~~L~~A~~g~~g~td~~~li~Il~~rs~~~l~~I~~~Y~~~~g~~L~~~I~~~~~g~~~~~l~~~ 163 (246)
.||+.|++|++|. |+|+..+++||++||+.|++.|+++|+..||++|+++|+++++|+|+++|+++
T Consensus 1 ~DA~~l~~a~~~~--g~de~~li~Il~~rs~~ql~~i~~~Y~~~~g~~L~~~i~~e~sGd~~~~Ll~l 66 (66)
T PF00191_consen 1 YDAELLHAALKGW--GTDEDVLIEILCTRSPAQLRAIKQAYKKKYGKDLEEDIKKETSGDFEKLLLAL 66 (66)
T ss_dssp HHHHHHHHHHSSS--SSTHHHHHHHHHHSTHHHHHHHHHHHHHHHSS-HHHHHHHHSTHHHHHHHHHH
T ss_pred CHHHHHHHHccCC--CCChhHhhhHHhhhcccccceeehhhhhhhHHHHHHHHHHhCCHHHHHHHHhC
Confidence 5899999999996 59999999999999999999999999999999999999999999999998764
No 5
>smart00335 ANX Annexin repeats.
Probab=99.44 E-value=2.4e-13 Score=88.10 Aligned_cols=53 Identities=34% Similarity=0.677 Sum_probs=51.1
Q ss_pred CCCHHHHHHHHHhCCHHHHHHHHHHHHHhhCccHHHHhhccCCChHHHHHHHHH
Q 025907 186 RVDKAAVARVLVSRAEVDMDEIQRIFKKKYGMELRDAICESIPSGDYRDFLVAL 239 (246)
Q Consensus 186 gtd~~~li~il~~rs~~~l~~i~~~Y~~~yg~~L~~~I~~~~~~G~~~~~Ll~l 239 (246)
|||+..|++|+++|++.|+.+|+.+|+..||++|.++|+++ ++|+|+++|++|
T Consensus 1 gtde~~l~~il~~rs~~~~~~i~~~Y~~~~~~~L~~~i~~e-~sG~~~~~l~~l 53 (53)
T smart00335 1 GTDEKTLIEILASRSNAQLQAIKQAYKKRYGKDLEDDIKSE-TSGDFEKLLLAL 53 (53)
T ss_pred CCCHHHHHHHHHcCCHHHHHHHHHHHHHHhCccHHHHHHHh-cChHHHHHHHhC
Confidence 69999999999999999999999999999999999999999 799999999875
No 6
>smart00335 ANX Annexin repeats.
Probab=99.40 E-value=6.3e-13 Score=86.14 Aligned_cols=51 Identities=31% Similarity=0.515 Sum_probs=49.3
Q ss_pred ChHHHHHHHhhcCCHHHHHHHHHHHHHHhCCCHHHHHhhcCCCchHHHHHH
Q 025907 112 AEKAVVLEIFSKRSIPQMKLTFSCYKHIYGHDYTKSLKRGNSTDFEDALKM 162 (246)
Q Consensus 112 td~~~li~Il~~rs~~~l~~I~~~Y~~~~g~~L~~~I~~~~~g~~~~~l~~ 162 (246)
||+..+++|+++||+.|++.|+++|+..||++|.++|+++++|+|++++++
T Consensus 2 tde~~l~~il~~rs~~~~~~i~~~Y~~~~~~~L~~~i~~e~sG~~~~~l~~ 52 (53)
T smart00335 2 TDEKTLIEILASRSNAQLQAIKQAYKKRYGKDLEDDIKSETSGDFEKLLLA 52 (53)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHhCccHHHHHHHhcChHHHHHHHh
Confidence 899999999999999999999999999999999999999999999998764
No 7
>PF14003 YlbE: YlbE-like protein
Probab=58.29 E-value=16 Score=24.36 Aligned_cols=30 Identities=13% Similarity=0.200 Sum_probs=27.3
Q ss_pred hhcCCHHHHHHHHHHHHHHhCCCHHHHHhh
Q 025907 121 FSKRSIPQMKLTFSCYKHIYGHDYTKSLKR 150 (246)
Q Consensus 121 l~~rs~~~l~~I~~~Y~~~~g~~L~~~I~~ 150 (246)
..+|.|+++.....++...|++++-+.|+.
T Consensus 17 ~LsR~P~~l~~fe~~a~~~y~kT~p~rVek 46 (65)
T PF14003_consen 17 ILSRNPEELEAFEKEAKHFYKKTIPHRVEK 46 (65)
T ss_pred HHccCHHHHHHHHHHHHHHHhccccHHHHH
Confidence 346899999999999999999999999876
No 8
>PF14003 YlbE: YlbE-like protein
Probab=55.22 E-value=17 Score=24.22 Aligned_cols=33 Identities=9% Similarity=0.284 Sum_probs=29.6
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHhhccCHHHHhh
Q 025907 41 LIEILVGRKSSHIALIKQAYQTRYKRHLDQDIA 73 (246)
Q Consensus 41 li~iL~~rs~~e~~~I~~~Y~~~~~~~L~~~i~ 73 (246)
..--.++|+|.++.....++..-|++...+.|.
T Consensus 13 ~WYR~LsR~P~~l~~fe~~a~~~y~kT~p~rVe 45 (65)
T PF14003_consen 13 IWYRILSRNPEELEAFEKEAKHFYKKTIPHRVE 45 (65)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHhccccHHHH
Confidence 445578999999999999999999999999887
No 9
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=46.41 E-value=26 Score=31.57 Aligned_cols=61 Identities=16% Similarity=0.232 Sum_probs=43.0
Q ss_pred HHHHHHHHhhcCCCCCCChHHHHHHHhhcCCHHHHHHHHHHHHHHhCCCHHHHHhhcCCCchH
Q 025907 95 KCDAKRLYETGEGSPGAAEKAVVLEIFSKRSIPQMKLTFSCYKHIYGHDYTKSLKRGNSTDFE 157 (246)
Q Consensus 95 ~~da~~L~~A~~g~~g~td~~~li~Il~~rs~~~l~~I~~~Y~~~~g~~L~~~I~~~~~g~~~ 157 (246)
..+....|+|+.- || ||...|-.++-.|+.-|+.+-+..=+..-..-+.++++...+-++.
T Consensus 370 ~~e~ekFYKALs~-wG-tdF~LIs~lfP~R~RkqIKaKfi~Eek~nP~rIn~aL~~kkp~d~~ 430 (507)
T COG5118 370 KKEIEKFYKALSI-WG-TDFSLISSLFPNRERKQIKAKFIKEEKVNPERINEALNEKKPFDQV 430 (507)
T ss_pred HHHHHHHHHHHHH-hc-chHHHHHHhcCchhHHHHHHHHHHHhhhCHHHHHHHHhccCCCCHH
Confidence 4678889999987 66 9999999999999888876544333333444566666666655443
No 10
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=39.77 E-value=26 Score=24.40 Aligned_cols=27 Identities=19% Similarity=0.497 Sum_probs=19.7
Q ss_pred CCCHHHHHHHHHHHHHhhc--cCHHHHhh
Q 025907 47 GRKSSHIALIKQAYQTRYK--RHLDQDIA 73 (246)
Q Consensus 47 ~rs~~e~~~I~~~Y~~~~~--~~L~~~i~ 73 (246)
+-+.+++..|+++|+.+|. .++.+.+.
T Consensus 27 Gfs~~~i~~l~~ayr~l~~~~~~~~~a~~ 55 (83)
T PF13720_consen 27 GFSKEEISALRRAYRILFRSGLTLEEALE 55 (83)
T ss_dssp TS-HHHHHHHHHHHHHHHTSSS-HHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 4578999999999999996 44555554
No 11
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.03 E-value=1.8e+02 Score=27.12 Aligned_cols=105 Identities=12% Similarity=0.246 Sum_probs=57.6
Q ss_pred chhHHHHHHHHHHhhcCCCCCCChHHHHHHHhhc--CCHHHHHHHHHH-----HHHHhCCCHHHHHhhcCCCchHHHHHH
Q 025907 90 SQHVAKCDAKRLYETGEGSPGAAEKAVVLEIFSK--RSIPQMKLTFSC-----YKHIYGHDYTKSLKRGNSTDFEDALKM 162 (246)
Q Consensus 90 ~~~~~~~da~~L~~A~~g~~g~td~~~li~Il~~--rs~~~l~~I~~~-----Y~~~~g~~L~~~I~~~~~g~~~~~l~~ 162 (246)
+....+..+++|++-..|. ...+++|++ .|++||+++... ....-|+-+.+.+ |.|+ +|.-
T Consensus 25 dw~ai~~fceqinkdp~gp------~lAv~LlaHKiqSPqe~EAl~altvLe~cmkncGekfH~ev-----gkfr-FLNE 92 (594)
T KOG1086|consen 25 DWKAIDGFCEQINKDPEGP------LLAVRLLAHKIQSPQEWEALQALTVLEYCMKNCGEKFHEEV-----GKFR-FLNE 92 (594)
T ss_pred HHHHHHHHHHHHhcCCCCc------hhHHHHHHhhcCChhHHHHHHHHHHHHHHHHhhhHHHHHHH-----HHHH-HHHH
Confidence 3455677788888877775 234466665 588999887543 1122233333333 2232 2222
Q ss_pred HHHhhCCchHHHHHHHHHhhcCCCCCHHHHHHHHHhCC--HHHHHHHHHHHHHh
Q 025907 163 VVKCILNPPNYYAKTLYASIKGTRVDKAAVARVLVSRA--EVDMDEIQRIFKKK 214 (246)
Q Consensus 163 ~~~~~~~~~~~~A~~L~~a~~g~gtd~~~li~il~~rs--~~~l~~i~~~Y~~~ 214 (246)
++... .++|....-..+++ ..+|++|.+|+ -.|...|+++|+-.
T Consensus 93 LIkvv--sPKYlG~~tSekvK------tkiIelLfsWtv~lpe~~KikdaYqmL 138 (594)
T KOG1086|consen 93 LIKVV--SPKYLGSRTSEKVK------TKIIELLFSWTVSLPEEPKIKDAYQML 138 (594)
T ss_pred HHHHh--CchhcchhhhHHHH------HHHHHHHhhheecCcccchHHHHHHHH
Confidence 22222 22333222222222 34888888774 35788999999953
No 12
>COG4800 Predicted transcriptional regulator with an HTH domain [Transcription]
Probab=28.80 E-value=2e+02 Score=22.36 Aligned_cols=87 Identities=23% Similarity=0.330 Sum_probs=47.5
Q ss_pred chHHHHHHHHHhhCCchHHHHHH-------HHHhhcCCCCCHHHHHHHHHh-CCHHH---------------HHHHHHHH
Q 025907 155 DFEDALKMVVKCILNPPNYYAKT-------LYASIKGTRVDKAAVARVLVS-RAEVD---------------MDEIQRIF 211 (246)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~~~A~~-------L~~a~~g~gtd~~~li~il~~-rs~~~---------------l~~i~~~Y 211 (246)
+|...|..++.-..-.+..||+. ||+-++|...+.++|++|+-+ |+-.. |..|+..=
T Consensus 16 ~F~~~l~~~l~Elglt~~eFak~anIP~StLYKil~G~dpr~~tl~~I~ktir~~ek~en~~fiA~IAAR~vL~~i~~~k 95 (170)
T COG4800 16 DFGSCLQKLLDELGLTPSEFAKRANIPLSTLYKILKGSDPRYDTLTRIFKTIRSYEKKENIGFIALIAARYVLEEIKFGK 95 (170)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHcCCCHHHHHHHHhCCCccHHHHHHHHHHHHHHHhccCCCeeeeeehHHHHHHHHhhh
Confidence 45555554444433334444543 889999987889999999854 33211 33443333
Q ss_pred HHhhCccHHHHhhccCCChHHHHHHHHHhcccc
Q 025907 212 KKKYGMELRDAICESIPSGDYRDFLVALATKAS 244 (246)
Q Consensus 212 ~~~yg~~L~~~I~~~~~~G~~~~~Ll~l~~~~~ 244 (246)
+..-|++.- |+ ++.-...++++++.+++.+
T Consensus 96 k~i~gk~~~--ir-eYpa~slEeaIvAaVrAEr 125 (170)
T COG4800 96 KGINGKSYL--IR-EYPASSLEEAIVAAVRAER 125 (170)
T ss_pred ccccCceeE--EE-ecccccHHHHHHHHHHhhh
Confidence 323333221 22 3344567777777776544
No 13
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.26 E-value=75 Score=26.14 Aligned_cols=32 Identities=28% Similarity=0.508 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhCccHHHHhhccCCChHHHHHH
Q 025907 204 MDEIQRIFKKKYGMELRDAICESIPSGDYRDFL 236 (246)
Q Consensus 204 l~~i~~~Y~~~yg~~L~~~I~~~~~~G~~~~~L 236 (246)
|+.|++.|.++||.....++.-. ++-.|.+.|
T Consensus 80 Le~Ik~~F~k~YG~~a~ta~Ays-mN~EFs~vL 111 (217)
T KOG0859|consen 80 LERIKEDFKKRYGGGAHTAVAYS-MNKEFSSVL 111 (217)
T ss_pred HHHHHHHHHHHhccchhHHHHhH-hHHHHHHHH
No 14
>PRK02866 cyanate hydratase; Validated
Probab=25.25 E-value=2.7e+02 Score=21.79 Aligned_cols=87 Identities=20% Similarity=0.203 Sum_probs=51.2
Q ss_pred HHHHHhCCCHHHHHhhcCCCchHHHHHHHHHhhCCchHHHHHHHHHhhcCCCCCHHHHHHHHH---hCCH-----HHHHH
Q 025907 135 CYKHIYGHDYTKSLKRGNSTDFEDALKMVVKCILNPPNYYAKTLYASIKGTRVDKAAVARVLV---SRAE-----VDMDE 206 (246)
Q Consensus 135 ~Y~~~~g~~L~~~I~~~~~g~~~~~l~~~~~~~~~~~~~~A~~L~~a~~g~gtd~~~li~il~---~rs~-----~~l~~ 206 (246)
.-+...|.+.+ +|...+ |--+....++..+.+.+....|+.|-+.+ |-+++.+ ..|. .|.. ..=..
T Consensus 12 ~AK~~kGLTw~-~IA~~i-G~S~v~vaaa~lGQ~~ls~e~A~kla~~L---gL~~~~~-~~l~~~P~rg~~~~~~ptdP~ 85 (147)
T PRK02866 12 AAKKEKGLTWA-DIAEAI-GLSEVWVTAALLGQMTLPAEEAEKVAELL---GLDEDAV-ALLQEVPYRGSLPPAVPTDPL 85 (147)
T ss_pred HHHHHcCCCHH-HHHHHh-CCCHHHHHHHHhCCCCCCHHHHHHHHHHh---CCCHHHH-HHHhcCCcCCCCCCCCCCCcH
Confidence 34555677773 555555 44556666677787888888888887777 3455533 3332 2210 11123
Q ss_pred HHHHHH--HhhCccHHHHhhccC
Q 025907 207 IQRIFK--KKYGMELRDAICESI 227 (246)
Q Consensus 207 i~~~Y~--~~yg~~L~~~I~~~~ 227 (246)
|..-|+ ..||.++.+.|..+|
T Consensus 86 iYR~yE~v~vYG~~~K~~i~E~F 108 (147)
T PRK02866 86 IYRFYEMVQVYGTTLKALIHEKF 108 (147)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHh
Confidence 444444 268888888888775
No 15
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=24.28 E-value=1.5e+02 Score=16.90 Aligned_cols=36 Identities=14% Similarity=0.185 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhcCC-CCHHHHHHHHhCCCHHHHHHH
Q 025907 21 ERDAAVARQALEESV-VNFKALIEILVGRKSSHIALI 56 (246)
Q Consensus 21 ~~da~~L~~A~~g~g-~de~~li~iL~~rs~~e~~~I 56 (246)
..+...|..++...| .+=..|-..+.+||+.+...-
T Consensus 6 ~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~ 42 (49)
T smart00717 6 EEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRER 42 (49)
T ss_pred HHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHH
Confidence 345667888888888 777888888889999877543
No 16
>PF13043 DUF3903: Domain of unknown function (DUF3903)
Probab=23.43 E-value=79 Score=18.42 Aligned_cols=17 Identities=18% Similarity=0.505 Sum_probs=13.9
Q ss_pred HHHHHHHHHHhhCccHH
Q 025907 204 MDEIQRIFKKKYGMELR 220 (246)
Q Consensus 204 l~~i~~~Y~~~yg~~L~ 220 (246)
+..++.+-+++||++|-
T Consensus 10 i~kvr~eckrrfgktll 26 (40)
T PF13043_consen 10 IQKVRAECKRRFGKTLL 26 (40)
T ss_pred HHHHHHHHHHHhchhhh
Confidence 56788888999998863
No 17
>PF12098 DUF3574: Protein of unknown function (DUF3574); InterPro: IPR021957 This family of proteins is functionally uncharacterised. This protein is found in bacteria and viruses. Proteins in this family are typically between 144 to 163 amino acids in length. This protein has a conserved TPRF sequence motif.
Probab=22.84 E-value=71 Score=23.41 Aligned_cols=19 Identities=26% Similarity=0.660 Sum_probs=15.8
Q ss_pred CHHHHHHHHHHHHHhhccC
Q 025907 49 KSSHIALIKQAYQTRYKRH 67 (246)
Q Consensus 49 s~~e~~~I~~~Y~~~~~~~ 67 (246)
+.+.+.+|+++|+..|++.
T Consensus 73 ~~~~i~~Ir~~Yk~rF~Qe 91 (104)
T PF12098_consen 73 AEARIEAIREAYKQRFQQE 91 (104)
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 3567889999999999865
No 18
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=22.30 E-value=3.6e+02 Score=21.45 Aligned_cols=62 Identities=11% Similarity=0.320 Sum_probs=33.7
Q ss_pred HhhcCCCchH-HHHHHHHHhhC---CchHHHHHHHHHhhc-----CCCC-CHHHHHHHHHhCCH-HHHHHHHHHHHH
Q 025907 148 LKRGNSTDFE-DALKMVVKCIL---NPPNYYAKTLYASIK-----GTRV-DKAAVARVLVSRAE-VDMDEIQRIFKK 213 (246)
Q Consensus 148 I~~~~~g~~~-~~l~~~~~~~~---~~~~~~A~~L~~a~~-----g~gt-d~~~li~il~~rs~-~~l~~i~~~Y~~ 213 (246)
+-.+.+|++- .+|+++..--. +|. +.|..|.+ |.|+ +++.|.++|.+... -.-+.|.+.|+.
T Consensus 73 M~~Ea~gPINft~FLTmfGekL~gtdpe----~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~ 145 (171)
T KOG0031|consen 73 MMKEAPGPINFTVFLTMFGEKLNGTDPE----EVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYRE 145 (171)
T ss_pred HHHhCCCCeeHHHHHHHHHHHhcCCCHH----HHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHh
Confidence 3345566653 33444443221 332 33445544 4565 89999999986433 245666666664
No 19
>COG5664 Predicted secreted Zn-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=21.66 E-value=2.6e+02 Score=22.60 Aligned_cols=38 Identities=16% Similarity=0.298 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhhCccHHHHhhccCCChHHHHHHHHHhccc
Q 025907 203 DMDEIQRIFKKKYGMELRDAICESIPSGDYRDFLVALATKA 243 (246)
Q Consensus 203 ~l~~i~~~Y~~~yg~~L~~~I~~~~~~G~~~~~Ll~l~~~~ 243 (246)
.|.+|.++|.+ -|+++...=- . ..|+.++++++++++.
T Consensus 164 rl~~is~~qrq-k~rdFDr~E~-s-~GGnv~qLIl~l~ng~ 201 (201)
T COG5664 164 RLGAISAEQRQ-KGRDFDRVEL-S-SGGNVQQLILALVNGP 201 (201)
T ss_pred HHHHHHHHHHH-hccccchhhh-C-CCCcHHHHHHHHhcCC
Confidence 47788888886 4456655333 2 3689999999999863
No 20
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=21.59 E-value=1.9e+02 Score=17.22 Aligned_cols=35 Identities=14% Similarity=0.222 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhcCCCC-HHHHHHHHh-CCCHHHHHH
Q 025907 21 ERDAAVARQALEESVVN-FKALIEILV-GRKSSHIAL 55 (246)
Q Consensus 21 ~~da~~L~~A~~g~g~d-e~~li~iL~-~rs~~e~~~ 55 (246)
..+-..|.++++..|++ =..|-+-+. +||..|...
T Consensus 6 ~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~ 42 (48)
T PF00249_consen 6 EEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRS 42 (48)
T ss_dssp HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHH
Confidence 34678889999999998 688888888 899988654
No 21
>PHA02666 hypothetical protein; Provisional
Probab=20.82 E-value=87 Score=26.06 Aligned_cols=26 Identities=12% Similarity=0.087 Sum_probs=20.6
Q ss_pred CCCChhhHHHHHHHHcCCChHHHHHHHHHHHhcCCCCH
Q 025907 1 MAGFLPKNCAALDVWMLGSHERDAAVARQALEESVVNF 38 (246)
Q Consensus 1 ~~~~~~~~~~~l~~l~~~~~~~da~~L~~A~~g~g~de 38 (246)
|+|||+-|+-+ |.+|++.|+|-|..+
T Consensus 1 MaG~~~~~R~V------------C~eiWktmRG~GHH~ 26 (287)
T PHA02666 1 MAGLFTTVRCV------------CNEIWKTMRGDGHHE 26 (287)
T ss_pred CcchhhhhhHH------------HHHHHHHhcccCccc
Confidence 88998886654 678889999988665
No 22
>KOG2027 consensus Spindle pole body protein [Cytoskeleton]
Probab=20.38 E-value=2.9e+02 Score=25.25 Aligned_cols=31 Identities=13% Similarity=0.367 Sum_probs=26.5
Q ss_pred CHHHHHHHHHHHHHHhCCCHHHHHhhcCCCc
Q 025907 125 SIPQMKLTFSCYKHIYGHDYTKSLKRGNSTD 155 (246)
Q Consensus 125 s~~~l~~I~~~Y~~~~g~~L~~~I~~~~~g~ 155 (246)
-..+|+.|++.|..+||+++.........+.
T Consensus 96 EvpEL~~i~~~f~~kYGk~f~~~a~~l~p~~ 126 (388)
T KOG2027|consen 96 EVPELREIRDLFVKKYGKEFVKAAIELRPGN 126 (388)
T ss_pred ccHHHHHHHHHHHHHHhHHHHHHHHhccccC
Confidence 3789999999999999999999888776443
Done!