BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025908
(246 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1E7S|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase K140r
Length = 321
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 95/250 (38%), Gaps = 43/250 (17%)
Query: 30 APIAQQLPGESDQEFAEFSSKILHLKGDRKDYDFVKSSLSAKGFDVVYDINGREADEVEP 89
+ I +QL D E + L+L R +DF S + + + G A+ P
Sbjct: 17 SAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFFASERIDQVYLAAAKVGGIVANNTYP 76
Query: 90 -------------ILDAL--PNLEQFIYCSSAGVYLKSDLLPHCETD----TVDPK---- 126
I+ A ++ + ++ S+ +Y K P E++ T++P
Sbjct: 77 ADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPY 136
Query: 127 --SRHKGKLNTESVLESKGVNWTSLRPVYIYGPL-NYNPVEEWF-------FHRLKAGRP 176
+R G ES G ++ S+ P +YGP N++P FH A
Sbjct: 137 AIARIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQSA 196
Query: 177 --IPIPGSGIQVTQLGHVKDLARAFVQV--------LGNEKASRQVFNISGEKYVTFDGL 226
+ + GSG + + HV D+A A + V L N + N+ T L
Sbjct: 197 PDVVVWGSGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIREL 256
Query: 227 ARACAKVTGY 236
A+ AKV GY
Sbjct: 257 AQTIAKVVGY 266
>pdb|1E6U|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase
Length = 321
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 96/250 (38%), Gaps = 43/250 (17%)
Query: 30 APIAQQLPGESDQEFAEFSSKILHLKGDRKDYDFVKSSLSAKGFDVVYDINGREADEVEP 89
+ I +QL D E + L+L R +DF S + + + G A+ P
Sbjct: 17 SAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFFASERIDQVYLAAAKVGGIVANNTYP 76
Query: 90 -------------ILDAL--PNLEQFIYCSSAGVYLKSDLLPHCETD----TVDPK---- 126
I+ A ++ + ++ S+ +Y K P E++ T++P
Sbjct: 77 ADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPY 136
Query: 127 --SRHKGKLNTESVLESKGVNWTSLRPVYIYGPL-NYNPVEEWF-------FHRLKAGRP 176
++ G ES G ++ S+ P +YGP N++P FH A +
Sbjct: 137 AIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKA 196
Query: 177 --IPIPGSGIQVTQLGHVKDLARAFVQV--------LGNEKASRQVFNISGEKYVTFDGL 226
+ + GSG + + HV D+A A + V L N + N+ T L
Sbjct: 197 PDVVVWGSGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIREL 256
Query: 227 ARACAKVTGY 236
A+ AKV GY
Sbjct: 257 AQTIAKVVGY 266
>pdb|1BWS|A Chain A, Crystal Structure Of Gdp-4-Keto-6-Deoxy-D-Mannose
EpimeraseREDUCTASE From Escherichia Coli A Key Enzyme In
The Biosynthesis Of Gdp-L- Fucose
Length = 321
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 95/250 (38%), Gaps = 43/250 (17%)
Query: 30 APIAQQLPGESDQEFAEFSSKILHLKGDRKDYDFVKSSLSAKGFDVVYDINGREADEVEP 89
+ I +QL D E + L+L R +DF S + + + G A+ P
Sbjct: 17 SAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFFASERIDQVYLAAAKVGGIVANNTYP 76
Query: 90 -------------ILDAL--PNLEQFIYCSSAGVYLKSDLLPHCETD----TVDPK---- 126
I+ A ++ + ++ S+ +Y K P E++ T++P
Sbjct: 77 ADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPY 136
Query: 127 --SRHKGKLNTESVLESKGVNWTSLRPVYIYGPL-NYNPVEEWF-------FHRLKAGRP 176
++ G ES G ++ S+ P +YGP N++P FH A
Sbjct: 137 AIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQNA 196
Query: 177 --IPIPGSGIQVTQLGHVKDLARAFVQV--------LGNEKASRQVFNISGEKYVTFDGL 226
+ + GSG + + HV D+A A + V L N + N+ T L
Sbjct: 197 PDVVVWGSGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRDL 256
Query: 227 ARACAKVTGY 236
A+ AKV GY
Sbjct: 257 AQTIAKVVGY 266
>pdb|1BSV|A Chain A, Gdp-Fucose Synthetase From Escherichia Coli Complex With
Nadph
pdb|1FXS|A Chain A, Gdp-fucose Synthetase From Escherichia Coli Complex With
Nadp
pdb|1GFS|A Chain A, Gdp-Fucose Synthetase From E. Coli
Length = 321
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 95/250 (38%), Gaps = 43/250 (17%)
Query: 30 APIAQQLPGESDQEFAEFSSKILHLKGDRKDYDFVKSSLSAKGFDVVYDINGREADEVEP 89
+ I +QL D E + L+L R +DF S + + + G A+ P
Sbjct: 17 SAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFFASERIDQVYLAAAKVGGIVANNTYP 76
Query: 90 -------------ILDAL--PNLEQFIYCSSAGVYLKSDLLPHCETD----TVDPK---- 126
I+ A ++ + ++ S+ +Y K P E++ T++P
Sbjct: 77 ADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPY 136
Query: 127 --SRHKGKLNTESVLESKGVNWTSLRPVYIYGPL-NYNPVEEWF-------FHRLKAGRP 176
++ G ES G ++ S+ P +YGP N++P FH A
Sbjct: 137 AIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQNA 196
Query: 177 --IPIPGSGIQVTQLGHVKDLARAFVQV--------LGNEKASRQVFNISGEKYVTFDGL 226
+ + GSG + + HV D+A A + V L N + N+ T L
Sbjct: 197 PDVVVWGSGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIREL 256
Query: 227 ARACAKVTGY 236
A+ AKV GY
Sbjct: 257 AQTIAKVVGY 266
>pdb|1E7R|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase Y136e
Length = 321
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 95/250 (38%), Gaps = 43/250 (17%)
Query: 30 APIAQQLPGESDQEFAEFSSKILHLKGDRKDYDFVKSSLSAKGFDVVYDINGREADEVEP 89
+ I +QL D E + L+L R +DF S + + + G A+ P
Sbjct: 17 SAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFFASERIDQVYLAAAKVGGIVANNTYP 76
Query: 90 -------------ILDAL--PNLEQFIYCSSAGVYLKSDLLPHCETD----TVDPK---- 126
I+ A ++ + ++ S+ +Y K P E++ T++P
Sbjct: 77 ADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPE 136
Query: 127 --SRHKGKLNTESVLESKGVNWTSLRPVYIYGPL-NYNPVEEWF-------FHRLKAGRP 176
++ G ES G ++ S+ P +YGP N++P FH A
Sbjct: 137 AIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQSA 196
Query: 177 --IPIPGSGIQVTQLGHVKDLARAFVQV--------LGNEKASRQVFNISGEKYVTFDGL 226
+ + GSG + + HV D+A A + V L N + N+ T L
Sbjct: 197 PDVVVWGSGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIREL 256
Query: 227 ARACAKVTGY 236
A+ AKV GY
Sbjct: 257 AQTIAKVVGY 266
>pdb|1E7Q|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase S107a
Length = 321
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 56/250 (22%), Positives = 95/250 (38%), Gaps = 43/250 (17%)
Query: 30 APIAQQLPGESDQEFAEFSSKILHLKGDRKDYDFVKSSLSAKGFDVVYDINGREADEVEP 89
+ I +QL D E + L+L R +DF S + + + G A+ P
Sbjct: 17 SAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFFASERIDQVYLAAAKVGGIVANNTYP 76
Query: 90 -------------ILDAL--PNLEQFIYCSSAGVYLKSDLLPHCETD----TVDPK---- 126
I+ A ++ + ++ ++ +Y K P E++ T++P
Sbjct: 77 ADFIYQNMMIESNIIHAAHQNDVNKLLFLGASCIYPKLAKQPMAESELLQGTLEPTNEPY 136
Query: 127 --SRHKGKLNTESVLESKGVNWTSLRPVYIYGPL-NYNPVEEWF-------FHRLKAGRP 176
++ G ES G ++ S+ P +YGP N++P FH A
Sbjct: 137 AIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQSA 196
Query: 177 --IPIPGSGIQVTQLGHVKDLARAFVQV--------LGNEKASRQVFNISGEKYVTFDGL 226
+ + GSG + + HV D+A A + V L N + N+ T L
Sbjct: 197 PDVVVWGSGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIREL 256
Query: 227 ARACAKVTGY 236
A+ AKV GY
Sbjct: 257 AQTIAKVVGY 266
>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose
4-Epimerase Mutant Y299c Complexed With
Udp-N-Acetylglucosamine
pdb|1LRL|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Mutant
Y299c Complexed With Udp-Glucose
Length = 338
Score = 34.7 bits (78), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 67/157 (42%), Gaps = 22/157 (14%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLF------TRGKAPIAQQLPG------ESDQEFAEFSS 49
GG+ +IG L++ GH V + R P+ ++L G E D +
Sbjct: 7 GGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMT 66
Query: 50 KILHLKGDRKDYDFVKSSLSAKGFDV-----VYDINGREADEVEPILDALPNLEQFIYCS 104
+ILH F + L A G V YD N + + A N++ FI+ S
Sbjct: 67 EILHDHAIDTVIHF--AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVKNFIFSS 123
Query: 105 SAGVYLKSDLLPHCET-DTVDPKSRH-KGKLNTESVL 139
SA VY + +P+ E+ T P+S + K KL E +L
Sbjct: 124 SATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQIL 160
>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase
Complexed With Udp-N-Acetylglucosamine
pdb|1NAH|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Reduced
pdb|1NAI|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Oxidized
pdb|1UDA|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|1UDB|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Glucose
pdb|1XEL|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli
Length = 338
Score = 34.7 bits (78), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 67/157 (42%), Gaps = 22/157 (14%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLF------TRGKAPIAQQLPG------ESDQEFAEFSS 49
GG+ +IG L++ GH V + R P+ ++L G E D +
Sbjct: 7 GGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMT 66
Query: 50 KILHLKGDRKDYDFVKSSLSAKGFDV-----VYDINGREADEVEPILDALPNLEQFIYCS 104
+ILH F + L A G V YD N + + A N++ FI+ S
Sbjct: 67 EILHDHAIDTVIHF--AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVKNFIFSS 123
Query: 105 SAGVYLKSDLLPHCET-DTVDPKSRH-KGKLNTESVL 139
SA VY + +P+ E+ T P+S + K KL E +L
Sbjct: 124 SATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQIL 160
>pdb|4B4O|A Chain A, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|B Chain B, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|C Chain C, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|D Chain D, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|E Chain E, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|F Chain F, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|G Chain G, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|H Chain H, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
Length = 298
Score = 34.7 bits (78), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLFTRGKAP 31
GGT FIG L++LL GH+VTL +R P
Sbjct: 7 GGTGFIGTALTQLLNARGHEVTLVSRKPGP 36
>pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|2UDP|B Chain B, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|1UDC|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-Mannose
Length = 338
Score = 34.3 bits (77), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 66/157 (42%), Gaps = 22/157 (14%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLF------TRGKAPIAQQLPG------ESDQEFAEFSS 49
GG+ +IG L++ GH V + R P+ ++L G E D +
Sbjct: 7 GGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMT 66
Query: 50 KILHLKGDRKDYDFVKSSLSAKGFDV-----VYDINGREADEVEPILDALPNLEQFIYCS 104
+ILH F + L A G V YD N + + A N++ FI+ S
Sbjct: 67 EILHDHAIDTVIHF--AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVKNFIFSS 123
Query: 105 SAGVYLKSDLLPHCET-DTVDPKSRH-KGKLNTESVL 139
SA VY +P+ E+ T P+S + K KL E +L
Sbjct: 124 SATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQIL 160
>pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|C Chain C, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|D Chain D, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1KEU|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEU|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEW|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
pdb|1KEW|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
Length = 361
Score = 34.3 bits (77), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 174 GRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKASRQVFNISGEK 219
G+P+PI G G Q+ +V+D ARA V+ KA + +NI G
Sbjct: 218 GKPLPIYGKGDQIRDWLYVEDHARALHMVVTEGKAG-ETYNIGGHN 262
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 33.9 bits (76), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 47/234 (20%), Positives = 94/234 (40%), Gaps = 35/234 (14%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTL---FTRGKAPIAQQLPGESDQEFAEFS---------S 49
GG F+G L+ L+ +GH+VT+ F G+ + G + E
Sbjct: 12 GGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVD 71
Query: 50 KILHLKGDRKDYDFVKSSLSAKGFDVVYDINGREADEVEPILDALPNL-EQFIYCSSAGV 108
+I HL +++ + + + + +N +L + + + S++ V
Sbjct: 72 QIYHLASPASPPNYMYNPIKTLKTNTIGTLN---------MLGLAKRVGARLLLASTSEV 122
Query: 109 YLKSDLLPHCE-----TDTVDPKSRH-KGKLNTESV----LESKGVNWTSLRPVYIYGP- 157
Y ++ P E + + P++ + +GK E++ ++ +GV R +GP
Sbjct: 123 YGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPR 182
Query: 158 --LNYNPVEEWFFHRLKAGRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKAS 209
+N V F + G P+ + GSG Q +V DL V ++ + +S
Sbjct: 183 MHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSS 236
>pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 33.9 bits (76), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 67/157 (42%), Gaps = 22/157 (14%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLF------TRGKAPIAQQLPG------ESDQEFAEFSS 49
GG+ +IG L++ GH V + R P+ ++L G E D +
Sbjct: 7 GGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMT 66
Query: 50 KILHLKGDRKDYDFVKSSLSAKGFDV-----VYDINGREADEVEPILDALPNLEQFIYCS 104
+ILH F + L A G V YD N + + A N++ FI+ S
Sbjct: 67 EILHDHAIDTVIHF--AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVKNFIFSS 123
Query: 105 SAGVYLKSDLLPHCET-DTVDPKSRH-KGKLNTESVL 139
+A VY + +P+ E+ T P+S + K KL E +L
Sbjct: 124 TATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQIL 160
>pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 67/157 (42%), Gaps = 22/157 (14%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLF------TRGKAPIAQQLPG------ESDQEFAEFSS 49
GG+ +IG L++ GH V + R P+ ++L G E D +
Sbjct: 7 GGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMT 66
Query: 50 KILHLKGDRKDYDFVKSSLSAKGFDV-----VYDINGREADEVEPILDALPNLEQFIYCS 104
+ILH F + L A G V YD N + + A N++ FI+ S
Sbjct: 67 EILHDHAIDTVIHF--AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVKNFIFSS 123
Query: 105 SAGVYLKSDLLPHCET-DTVDPKSRH-KGKLNTESVL 139
+A VY + +P+ E+ T P+S + K KL E +L
Sbjct: 124 AATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQIL 160
>pdb|3GPI|A Chain A, Structure Of Putative Nad-Dependent EpimeraseDEHYDRATASE
From Methylobacillus Flagellatus
Length = 286
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 67/164 (40%), Gaps = 18/164 (10%)
Query: 1 MGGTRFIGVFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESDQEFAEFS-----SKILHLK 55
+ G +G+ L+R L +GH+VT R AQ +P A+ + + I+HL+
Sbjct: 8 IAGCGDLGLELARRLTAQGHEVTGLRRS----AQPMPAGVQTLIADVTRPDTLASIVHLR 63
Query: 56 GDRKDYDFVKSSLSAKGFDVVYDINGREADEVEPILDALPN--LEQFIYCSSAGVYLKSD 113
+ Y S S + + + Y + + L AL L+ + SS GVY +
Sbjct: 64 PEILVYCVAASEYSDEHYRLSY------VEGLRNTLSALEGAPLQHVFFVSSTGVY-GQE 116
Query: 114 LLPHCETDTVDPKSRHKGKLNTESVLESKGVNWTSLRPVYIYGP 157
+ + DT GK E+ + T LR IYGP
Sbjct: 117 VEEWLDEDTPPIAKDFSGKRMLEAEALLAAYSSTILRFSGIYGP 160
>pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 66/157 (42%), Gaps = 22/157 (14%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLF------TRGKAPIAQQLPG------ESDQEFAEFSS 49
GG+ +IG L++ GH V + R P+ ++L G E D +
Sbjct: 7 GGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMT 66
Query: 50 KILHLKGDRKDYDFVKSSLSAKGFDV-----VYDINGREADEVEPILDALPNLEQFIYCS 104
+ILH F + L A G V YD N + + A N++ FI+ S
Sbjct: 67 EILHDHAIDTVIHF--AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVKNFIFSS 123
Query: 105 SAGVYLKSDLLPHCET-DTVDPKSRH-KGKLNTESVL 139
+A VY +P+ E+ T P+S + K KL E +L
Sbjct: 124 AATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQIL 160
>pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 65/157 (41%), Gaps = 22/157 (14%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLF------TRGKAPIAQQLPG------ESDQEFAEFSS 49
GG+ +IG L++ GH V + R P+ ++L G E D +
Sbjct: 7 GGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMT 66
Query: 50 KILHLKGDRKDYDFVKSSLSAKGFDV-----VYDINGREADEVEPILDALPNLEQFIYCS 104
+ILH F + L A G V YD N + + A N++ FI+ S
Sbjct: 67 EILHDHAIDTVIHF--AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVKNFIFSS 123
Query: 105 SAGVYLKSDLLPHCET-DTVDPKSRH-KGKLNTESVL 139
SA VY +P+ E+ T P+S K KL E +L
Sbjct: 124 SATVYGDQPKIPYVESFPTGTPQSPFGKSKLMVEQIL 160
>pdb|3M2P|A Chain A, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|B Chain B, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|C Chain C, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|D Chain D, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|E Chain E, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|F Chain F, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
Length = 311
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 54/239 (22%), Positives = 96/239 (40%), Gaps = 29/239 (12%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLFTR--GKAPIAQQLPGESDQEFAEFSSKILHLKGDRK 59
GGT F+G ++ + +G+ + TR G I +D E+ + L
Sbjct: 9 GGTGFLGQYVVESIKNDGNTPIILTRSIGNKAI-------NDYEYRVSDYTLEDLINQLN 61
Query: 60 DYDFVKSSLSAKGFDVVYDINGREADEV--EPILDAL--PNLEQFIYCSSAGVYLKSDLL 115
D D V + +G I+ +E+ + + DA N+ +Y S+ Y L
Sbjct: 62 DVDAVVHLAATRGSQG--KISEFHDNEILTQNLYDACYENNISNIVYASTISAYSDETSL 119
Query: 116 PHCETDTVDPKSRHK-GKLNTESV----LESKGVNWTSLRPVYIYGPLNYNPVEEW---- 166
P E + P + KL E + KG+ +LR ++YG +N +
Sbjct: 120 PWNEKELPLPDLXYGVSKLACEHIGNIYSRKKGLCIKNLRFAHLYG---FNEKNNYXINR 176
Query: 167 FFHRLKAGRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKASRQVFNI-SGEKYVTFD 224
FF + G + + + + + + KD A++ + L EK S FNI SG+ ++
Sbjct: 177 FFRQAFHGEQLTLHANSVAKREFLYAKDAAKSVIYALKQEKVS-GTFNIGSGDALTNYE 234
>pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 66/157 (42%), Gaps = 22/157 (14%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLF------TRGKAPIAQQLPG------ESDQEFAEFSS 49
GG+ +IG L++ GH V + R P+ ++L G E D +
Sbjct: 7 GGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMT 66
Query: 50 KILHLKGDRKDYDFVKSSLSAKGFDV-----VYDINGREADEVEPILDALPNLEQFIYCS 104
+ILH F + L A G V YD N + + A N++ FI+ S
Sbjct: 67 EILHDHAIDTVIHF--AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVKNFIFSS 123
Query: 105 SAGVYLKSDLLPHCET-DTVDPKSRH-KGKLNTESVL 139
A VY + +P+ E+ T P+S + K KL E +L
Sbjct: 124 VATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQIL 160
>pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
pdb|3VPS|B Chain B, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
Length = 321
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 57/142 (40%), Gaps = 30/142 (21%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESDQEFAEFSSKILHLKG-DRKD 60
GG FIG L+R LV G +VT+ + P +P E +F E +L L+ D D
Sbjct: 14 GGAGFIGGHLARALVASGEEVTVLDDLRVP--PMIPPEGTGKFLE--KPVLELEERDLSD 69
Query: 61 YDFVKSSLSAKGFDVVYDINGREADEVEPILDALPNLEQ----FIYCSSAG--------- 107
V S K + +P LD L N++ C+S G
Sbjct: 70 VRLVYHLASHKSVPRSFK---------QP-LDYLDNVDSGRHLLALCTSVGVPKVVVGST 119
Query: 108 --VYLKSDLLPHCETDTVDPKS 127
VY ++D LP E + P+S
Sbjct: 120 CEVYGQADTLPTPEDSPLSPRS 141
>pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Galactose
Length = 338
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 66/157 (42%), Gaps = 22/157 (14%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLF------TRGKAPIAQQLPG------ESDQEFAEFSS 49
GG+ +IG L++ GH V + R P+ ++L G E D +
Sbjct: 7 GGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMT 66
Query: 50 KILHLKGDRKDYDFVKSSLSAKGFDV-----VYDINGREADEVEPILDALPNLEQFIYCS 104
+ILH F + L A G V YD N + + A N++ FI+ S
Sbjct: 67 EILHDHAIDTVIHF--AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVKNFIFSS 123
Query: 105 SAGVYLKSDLLPHCET-DTVDPKSRH-KGKLNTESVL 139
+A VY + +P+ E+ T P+S K KL E +L
Sbjct: 124 AATVYGDNPKIPYVESFPTGTPQSPFGKSKLMVEQIL 160
>pdb|3SC4|A Chain A, Crystal Structure Of A Short Chain Dehydrogenase (A0qtm2
Homolog) Mycobacterium Thermoresistibile
pdb|3SC4|B Chain B, Crystal Structure Of A Short Chain Dehydrogenase (A0qtm2
Homolog) Mycobacterium Thermoresistibile
Length = 285
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLFTRGKAPIAQQLPG---ESDQEFAEFSSKILHLKGDR 58
GG+R IG+ +++ + +G V L + P +LPG + +E E + L + GD
Sbjct: 16 GGSRGIGLAIAKRVAADGANVALVAKSAEP-HPKLPGTIYTAAKEIEEAGGQALPIVGDI 74
Query: 59 KDYD 62
+D D
Sbjct: 75 RDGD 78
>pdb|2Q1W|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|C Chain C, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
Length = 333
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 82/206 (39%), Gaps = 12/206 (5%)
Query: 7 IGVFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESDQEFAEFS----SKILHLKGDRKDYD 62
IG ++ LL++ G +V + L + F E S + + L GD +
Sbjct: 33 IGSHIAELLLERGDKVVGIDNFATGRREHLKDHPNLTFVEGSIADHALVNQLIGDLQPDA 92
Query: 63 FVKSSLSAKGFDVVYDINGREADEVEPILDALP--NLEQFIYCSSAGVY-LKSDLLPHCE 119
V ++ S K D Y+ ++ A N+ +F+Y +A Y +K P
Sbjct: 93 VVHTAASYKDPDDWYNDTLTNCVGGSNVVQAAKKNNVGRFVYFQTALCYGVKPIQQPVRL 152
Query: 120 TDTVDP--KSRHKGKLNTESVLESKGVNWTSLRPVYIYGPLNYNPVEEWFFHRLKAGRPI 177
+P S K E LE G+++ + R + GP N + FF RL G+
Sbjct: 153 DHPRNPANSSYAISKSANEDYLEYSGLDFVTFRLANVVGPRNVSGPLPIFFQRLSEGKKC 212
Query: 178 PIPGSGIQVTQLGHVKDLARAFVQVL 203
+ + VKDLARA V+ +
Sbjct: 213 FVTKAR---RDFVFVKDLARATVRAV 235
>pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Glucose
Length = 338
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 65/157 (41%), Gaps = 22/157 (14%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLF------TRGKAPIAQQLPG------ESDQEFAEFSS 49
GG+ +IG L++ GH V + R P+ ++L G E D +
Sbjct: 7 GGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMT 66
Query: 50 KILHLKGDRKDYDFVKSSLSAKGFDV-----VYDINGREADEVEPILDALPNLEQFIYCS 104
+ILH F + L A G V YD N + + A N++ FI+ S
Sbjct: 67 EILHDHAIDTVIHF--AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVKNFIFSS 123
Query: 105 SAGVYLKSDLLPHCET-DTVDPKSRH-KGKLNTESVL 139
+A VY +P+ E+ T P+S K KL E +L
Sbjct: 124 AATVYGDQPKIPYVESFPTGTPQSPFGKSKLMVEQIL 160
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 31.2 bits (69), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 86/221 (38%), Gaps = 43/221 (19%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESDQEFAEFSSKILHLKGDRKDY 61
GG FIG L LV+ G++V + I Q+ G S + LH++ D KDY
Sbjct: 7 GGAGFIGSHLVDKLVELGYEVVVVD-----IVQRDTGGSAE---------LHVR-DLKDY 51
Query: 62 DFVKSSLSAKGFDVVYDINGR---EADEVEPILDALPN---------------LEQFIYC 103
+ KG DVV+ EPI+ N + ++
Sbjct: 52 SW---GAGIKG-DVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFA 107
Query: 104 SSAGVYLKSDLLPHCETDTVDPKS-----RHKGKLNTESVLESKGVNWTSLRPVYIYGP- 157
SS+ VY +D++P E + P S + G++ + GV ++R + GP
Sbjct: 108 SSSTVYGDADVIPTPEEEPYKPISVYGAAKAAGEVMCATYARLFGVRCLAVRYANVVGPR 167
Query: 158 LNYNPVEEWFFHRLKAGRPIPIPGSGIQVTQLGHVKDLARA 198
L + + ++ + + + G G Q +V+D A
Sbjct: 168 LRHGVIYDFIMKLRRNPNVLEVLGDGTQRKSYLYVRDAVEA 208
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 31.2 bits (69), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 87/221 (39%), Gaps = 39/221 (17%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESDQEFAEFSSKILHLKGDRKDY 61
GG FIG L LV+ G++V + + +EF S++ LH++ D KDY
Sbjct: 7 GGAGFIGSHLVDKLVELGYEVVVVDNLSS---------GRREFVNPSAE-LHVR-DLKDY 55
Query: 62 DFVKSSLSAKGFDVVYDINGR---EADEVEPILDALPN---------------LEQFIYC 103
+ KG DVV+ EPI+ N + ++
Sbjct: 56 SW---GAGIKG-DVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFA 111
Query: 104 SSAGVYLKSDLLPHCETDTVDPKS-----RHKGKLNTESVLESKGVNWTSLRPVYIYGP- 157
SS+ VY +D++P E + P S + G++ + GV ++R + GP
Sbjct: 112 SSSTVYGDADVIPTPEEEPYKPISVYGAAKAAGEVMCATYARLFGVRCLAVRYANVVGPR 171
Query: 158 LNYNPVEEWFFHRLKAGRPIPIPGSGIQVTQLGHVKDLARA 198
L + + ++ + + + G G Q +V+D A
Sbjct: 172 LRHGVIYDFIMKLRRNPNVLEVLGDGTQRKSYLYVRDAVEA 212
>pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
pdb|2HUN|B Chain B, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
Length = 336
Score = 30.8 bits (68), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 55/127 (43%), Gaps = 11/127 (8%)
Query: 99 QFIYCSSAGVYLKSDLL--PHCETDTVDPKSRHKGKLNTESVL-----ESKGVNWTSLRP 151
+F++ S+ VY D+L E D + P S + +L + +N + R
Sbjct: 121 RFVHVSTDEVY--GDILKGSFTENDRLMPSSPYSATKAASDMLVLGWTRTYNLNASITRC 178
Query: 152 VYIYGPLNY-NPVEEWFFHRLKAGRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKASR 210
YGP + + R G IPI G+G V +V+D RA VL + SR
Sbjct: 179 TNNYGPYQFPEKLIPKTIIRASLGLKIPIYGTGKNVRDWLYVEDHVRAIELVLL-KGESR 237
Query: 211 QVFNISG 217
+++NIS
Sbjct: 238 EIYNISA 244
>pdb|2PZJ|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+
pdb|2Q1S|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nadh
pdb|2Q1T|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
Length = 377
Score = 30.4 bits (67), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 15/90 (16%)
Query: 146 WTSLRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPGSGIQVTQLGHVKDLARAFVQVLGN 205
W ++ P +IY L G P+P+ G+ V+D+A + +
Sbjct: 231 WRNVTPTFIYKALK--------------GMPLPLENGGVATRDFIFVEDVANGLIACAAD 276
Query: 206 EKASRQVFNISGEKYVTFDGLARACAKVTG 235
V+NI+ K + LA ++TG
Sbjct: 277 GTPG-GVYNIASGKETSIADLATKINEITG 305
>pdb|1VCT|A Chain A, Crystal Structure Of Putative Potassium Channel Related
Protein From Pyrococcus Horikoshii
pdb|2BKN|A Chain A, Structure Analysis Of Unknown Function Protein
pdb|2BKO|A Chain A, Structure Analysis Of Unknown Function Protein
pdb|2BKP|A Chain A, Structure Analysis Of Unknown Function Protein
Length = 205
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 11/56 (19%)
Query: 153 YIYGPLNYNPVEEWFFHRLKAGRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKA 208
+I+GP N N +++AG + G G + T + H+K++AR ++V+GNE+A
Sbjct: 161 WIFGP-NEN-------FKIRAGDVLI--GRGTR-TSIDHLKEIARGAIRVIGNERA 205
>pdb|1UHT|A Chain A, Solution Structure Of The Fha Domain Of Arabidopsis
Thaliana Hypothetical Protein
Length = 118
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
Query: 141 SKGVNWTSLRPVYIYGP-----LNYNPVEEWFFHRLKAGRPIPIPGSGIQVTQLGHVKDL 195
S G+ SLR V++ GP L+Y P R+ G I I +GI L D
Sbjct: 5 SSGMVTPSLRLVFVKGPREGDALDYKPGSTIRVGRIVRGNEIAIKDAGISTKHLRIESDS 64
Query: 196 ARAFVQVLGNEKAS 209
+Q LG+ +
Sbjct: 65 GNWVIQDLGSSNGT 78
>pdb|2VRB|A Chain A, Crystal Structure Of The Citrobacter Sp. Triphenylmethane
Reductase Complexed With Nadp(H)
Length = 287
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 10/105 (9%)
Query: 133 LNTESVLESKGVNWTSLRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPGSGI--QVTQLG 190
L TE + + + +T LR +Y N E ++G + GSGI VT+
Sbjct: 122 LATEYAIRTTNIPYTFLRNA-LYTDFFVN---EGLRASTESGAIVTNAGSGIVNSVTR-- 175
Query: 191 HVKDLARAFVQVLGNEKASRQVFNISGEKYVTFDGLARACAKVTG 235
+LA A VL E + +N+ + TFD LA+ ++V+G
Sbjct: 176 --NELALAAATVLTEEGHENKTYNLVSNQPWTFDELAQILSEVSG 218
>pdb|1BXK|A Chain A, Dtdp-Glucose 4,6-Dehydratase From E. Coli
pdb|1BXK|B Chain B, Dtdp-Glucose 4,6-Dehydratase From E. Coli
Length = 355
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 173 AGRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKASRQVFNISGEK 219
AG+ +P+ G+G Q+ +V+D ARA V K + +NI G
Sbjct: 210 AGKSLPVYGNGQQIRDWLYVEDHARALYCVATTGKVG-ETYNIGGHN 255
>pdb|2VRC|A Chain A, Crystal Structure Of The Citrobacter Sp. Triphenylmethane
Reductase Complexed With Nadp(h)
pdb|2VRC|B Chain B, Crystal Structure Of The Citrobacter Sp. Triphenylmethane
Reductase Complexed With Nadp(h)
pdb|2VRC|C Chain C, Crystal Structure Of The Citrobacter Sp. Triphenylmethane
Reductase Complexed With Nadp(h)
Length = 287
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 10/105 (9%)
Query: 133 LNTESVLESKGVNWTSLRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPGSGI--QVTQLG 190
L TE + + + +T LR +Y N E ++G + GSGI VT+
Sbjct: 122 LATEYAIRTTNIPYTFLRNA-LYTDFFVN---EGLRASTESGAIVTNAGSGIVNSVTR-- 175
Query: 191 HVKDLARAFVQVLGNEKASRQVFNISGEKYVTFDGLARACAKVTG 235
+LA A VL E + +N+ + TFD LA+ ++V+G
Sbjct: 176 --NELALAAATVLTEEGHENKTYNLVSNQPWTFDELAQILSEVSG 218
>pdb|2JL1|A Chain A, Structural Insight Into Bioremediation Of Triphenylmethane
Dyes By Citrobacter Sp. Triphenylmethane Reductase
Length = 287
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 10/105 (9%)
Query: 133 LNTESVLESKGVNWTSLRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPGSGI--QVTQLG 190
L TE + + + +T LR +Y N E ++G + GSGI VT+
Sbjct: 122 LATEYAIRTTNIPYTFLRNA-LYTDFFVN---EGLRASTESGAIVTNAGSGIVNSVTR-- 175
Query: 191 HVKDLARAFVQVLGNEKASRQVFNISGEKYVTFDGLARACAKVTG 235
+LA A VL E + +N+ + TFD LA+ ++V+G
Sbjct: 176 --NELALAAATVLTEEGHENKTYNLVSNQPWTFDELAQILSEVSG 218
>pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose
4,6- Dehydratase) From Streptomyces Venezuelae With Nad
And Dau Bound
Length = 337
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 7/125 (5%)
Query: 99 QFIYCSSAGVYLKSDLLPHCETDTVDPKSRHKGK-----LNTESVLESKGVNWTSLRPVY 153
+ ++ S+ VY D E+ ++P S + L + + G++ R
Sbjct: 121 RVVHVSTNQVYGSIDSGSWTESSPLEPNSPYAASKAGSDLVARAYHRTYGLDVRITRCCN 180
Query: 154 IYGPLNY-NPVEEWFFHRLKAGRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKASRQV 212
YGP + + F L G +P+ G G V + H D R VL +A ++
Sbjct: 181 NYGPYQHPEKLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIALVLAGGRAG-EI 239
Query: 213 FNISG 217
++I G
Sbjct: 240 YHIGG 244
>pdb|1NXT|A Chain A, Micarec Ph 4.0
pdb|2A9R|A Chain A, Rr02-Rec Phosphate In The Active Site
Length = 120
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 50 KILHLKGDRKDYDFVKSSLSAKGFDVVYDINGREADE 86
KIL + ++ D +K +++ +G++VV NGREA E
Sbjct: 3 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALE 39
>pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase)
From Streptomyces Venezuelae With Nad And Tyd Bound
Length = 337
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 7/125 (5%)
Query: 99 QFIYCSSAGVYLKSDLLPHCETDTVDPKSRHKGK-----LNTESVLESKGVNWTSLRPVY 153
+ ++ S+ VY D E+ ++P S + L + + G++ R
Sbjct: 121 RVVHVSTDEVYGSIDSGSWTESSPLEPNSPYAASKAGSDLVARAYHRTYGLDVRITRCCN 180
Query: 154 IYGPLNY-NPVEEWFFHRLKAGRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKASRQV 212
YGP + + F L G +P+ G G V + H D R VL +A ++
Sbjct: 181 NYGPYQHPEKLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIALVLAGGRAG-EI 239
Query: 213 FNISG 217
++I G
Sbjct: 240 YHIGG 244
>pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid
Decarboxylase
Length = 343
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 49/228 (21%), Positives = 91/228 (39%), Gaps = 18/228 (7%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTL----FTRGKAPIAQQLPGESDQEFAEFSSKILHLKGD 57
GG F+G L+ L +GH+VT+ FT K + + E+ + + L+++ D
Sbjct: 34 GGAGFVGSHLTDKLXXDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVD 93
Query: 58 RKDYDFVKSSLSAKGFDVVYDINGREADEVEPILDALPNLEQFIYCSSAGVYLKSDLLPH 117
+ + +S ++ + + + + A + + S++ VY ++ P
Sbjct: 94 QIYHLASPASPPNYXYNPIKTLKTNTIGTLNXLGLAKRVGARLLLASTSEVYGDPEVHPQ 153
Query: 118 CE-----TDTVDPKSRH-KGKLNTESV----LESKGVNWTSLRPVYIYGP---LNYNPVE 164
E + + P++ + +GK E+ + +GV R +GP N V
Sbjct: 154 SEDYWGHVNPIGPRACYDEGKRVAETXCYAYXKQEGVEVRVARIFNTFGPRXHXNDGRVV 213
Query: 165 EWFFHRLKAGRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKASRQV 212
F + G P+ + GSG Q +V DL V L N S V
Sbjct: 214 SNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLV-ALXNSNVSSPV 260
>pdb|1NXO|A Chain A, Micarec Ph7.0
pdb|1NXP|A Chain A, Micarec Ph4.5
pdb|1NXS|A Chain A, Micarec Ph4.9
pdb|1NXV|A Chain A, Micarec Ph 4.2
pdb|1NXW|A Chain A, Micarec Ph 5.1
pdb|1NXX|A Chain A, Micarec Ph 5.5
pdb|2A9O|A Chain A, Crystal Structures Of An Activated Yycf Homologue, The
Essential Response Regulator From S.Pneumoniae In
Complex With Bef3 And The Effect Of Ph On Bef3 Binding,
Possible Phosphate In The Active Site
pdb|2A9P|A Chain A, Medium Resolution Bef3 Bound Rr02-Rec
pdb|2A9Q|A Chain A, Low Resolution Structure Rr02-rec On Bef3 Bound
Length = 120
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 50 KILHLKGDRKDYDFVKSSLSAKGFDVVYDINGREADE 86
KIL + ++ D +K +++ +G++VV NGREA E
Sbjct: 3 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALE 39
>pdb|2VRC|D Chain D, Crystal Structure Of The Citrobacter Sp. Triphenylmethane
Reductase Complexed With Nadp(h)
Length = 287
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 10/105 (9%)
Query: 133 LNTESVLESKGVNWTSLRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPGSGI--QVTQLG 190
L TE + + +T LR +Y N E ++G + GSGI VT+
Sbjct: 122 LATEYATRTTNIPYTFLRNA-LYTDFFVN---EGLRASTESGAIVTNAGSGIVNSVTR-- 175
Query: 191 HVKDLARAFVQVLGNEKASRQVFNISGEKYVTFDGLARACAKVTG 235
+LA A VL E + +N+ + TFD LA+ ++V+G
Sbjct: 176 --NELALAAATVLTEEGHENKTYNLVSNQPWTFDELAQILSEVSG 218
>pdb|3QTG|A Chain A, Crystal Structure Of Pyruvate Kinase From Pyrobaculum
Aerophilum
pdb|3QTG|B Chain B, Crystal Structure Of Pyruvate Kinase From Pyrobaculum
Aerophilum
Length = 461
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 47/114 (41%), Gaps = 21/114 (18%)
Query: 24 LFTRGKAPIAQ------QLPGESDQEFAEFSSKI--------LHLKGDRKDYDFVKSSLS 69
+ T GKA + + P E D E + S I + L KD D V+S L+
Sbjct: 160 VITGGKAIVVEGKDYDISTPAEEDVEALKAISPIRDNIDYVAISLAKSCKDVDSVRSLLT 219
Query: 70 AKGFDVVYDINGREADEVEPILDALPNLEQFIYCSSAGVYLKSDLLPHCETDTV 123
GF + A ++E A+ NLE+ + CS V + DL H D +
Sbjct: 220 ELGF------QSQVAVKIE-TKGAVNNLEELVQCSDYVVVARGDLGLHYGLDAL 266
>pdb|31BI|A Chain A, Interleukin-1 Beta (Il-1 Beta) (Mutant With Cys 71
Replaced By Ser) (C71s)
Length = 153
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 15/96 (15%)
Query: 50 KILHLKGDRKDYDFVKSSLSAKGFDVVYDINGREADEVEPILDALPNLEQFIYCSSAGVY 109
K LHL+G + V F + + + G E+++ P+ AL E+ +Y SS
Sbjct: 27 KALHLQGQDMEQQVV--------FSMSF-VQGEESNDKIPV--ALGLKEKNLYLSSV--- 72
Query: 110 LKSDLLPHCETDTVDPKSRHKGKLNTESVLESKGVN 145
LK D P + ++VDPK+ K K+ V +N
Sbjct: 73 LKDDK-PTLQLESVDPKNYPKKKMEKRFVFNKIEIN 107
>pdb|3BWW|A Chain A, Crystal Structure Of A Duf692 Family Protein (Hs_1138)
From Haemophilus Somnus 129pt At 2.20 A Resolution
Length = 307
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 189 LGHVKDLARAFVQVLGNEKASRQVFNISGEKYVTFDGLAR 228
LG+ +DLA F+Q+ N++ Q I+ E ++ G AR
Sbjct: 8 LGYRRDLAEGFLQLRNNDRI--QFXEIAPENWIKXGGFAR 45
>pdb|2W1K|A Chain A, Crystal Structure Of Sortase C-3 (Srtc-3) From
Streptococcus Pneumoniae
pdb|2W1K|B Chain B, Crystal Structure Of Sortase C-3 (Srtc-3) From
Streptococcus Pneumoniae
Length = 252
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 27/53 (50%)
Query: 174 GRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKASRQVFNISGEKYVTFDGL 226
G P+P+ G+GI+ GH + + F + L K ++ +G++ V + +
Sbjct: 96 GTPLPLDGTGIRSVIAGHRAEPSHVFFRHLDQLKVGDALYYDNGQEIVEYQMM 148
>pdb|2DC5|A Chain A, Crystal Structure Of Mouse Glutathione S-Transferase, Mu7
(Gstm7) At 1.6 A Resolution
pdb|2DC5|B Chain B, Crystal Structure Of Mouse Glutathione S-Transferase, Mu7
(Gstm7) At 1.6 A Resolution
Length = 231
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 13/78 (16%)
Query: 25 FTRGKAPIAQQLPGESDQEFAEFSSKILHLKGDRKDY-DFVKSSLSAKGFDVVYDINGRE 83
F + K +QLPG + ++EF K GD+ + DF+ YD+ R
Sbjct: 127 FEKLKPGYLEQLPGXX-RLYSEFLGKRPWFAGDKITFVDFI-----------AYDVLERN 174
Query: 84 ADEVEPILDALPNLEQFI 101
LDA PNL+ FI
Sbjct: 175 QVFEAKCLDAFPNLKDFI 192
>pdb|3C1O|A Chain A, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
Length = 321
Score = 27.3 bits (59), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 49/224 (21%), Positives = 93/224 (41%), Gaps = 35/224 (15%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESDQEFAEFSSKILHLKGDRKDY 61
GGT +IG F+ R + H ++ R P + + +EF I ++G+ +++
Sbjct: 11 GGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTI--IEGEMEEH 68
Query: 62 DFVKSSLSAKGFDVV-----YDINGREADEVEPILDALPNLEQFIYCSSAGVYLKSDLLP 116
+ + S L K D+V + + + + I A N+++F L SD
Sbjct: 69 EKMVSVL--KQVDIVISALPFPMISSQIHIINAI-KAAGNIKRF---------LPSDF-- 114
Query: 117 HCETDTVDPKSRHKGKLNTESVLESKGVNWTSLRPVYI-YGPLNYNPVEEWFFHRLKAGR 175
CE D + P ESVLE K + ++ + Y ++ N +F + L
Sbjct: 115 GCEEDRIKPLPPF------ESVLEKKRIIRRAIEAAALPYTYVSANCFGAYFVNYLLHPS 168
Query: 176 PIP-------IPGSGIQVTQLGHVKDLARAFVQVLGNEKASRQV 212
P P I G+G L + +D+A+ ++V + + ++
Sbjct: 169 PHPNRNDDIVIYGTGETKFVLNYEEDIAKYTIKVACDPRCCNRI 212
>pdb|2XSW|A Chain A, Crystal Structure Of Human Inpp5e
pdb|2XSW|B Chain B, Crystal Structure Of Human Inpp5e
Length = 357
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 120 TDTVDPKSRHKGKLNTESVLESKGVNWTSLRPVY 153
TD V +SRHKG + S G+ + RPVY
Sbjct: 282 TDRVLYRSRHKGDICPVSYSSCPGIKTSDHRPVY 315
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,633,192
Number of Sequences: 62578
Number of extensions: 320769
Number of successful extensions: 808
Number of sequences better than 100.0: 62
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 798
Number of HSP's gapped (non-prelim): 63
length of query: 246
length of database: 14,973,337
effective HSP length: 96
effective length of query: 150
effective length of database: 8,965,849
effective search space: 1344877350
effective search space used: 1344877350
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)