Query 025911
Match_columns 246
No_of_seqs 160 out of 1314
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 10:57:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025911.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025911hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15401 alpha-ketoglutarate-d 100.0 3.1E-37 6.6E-42 259.8 19.5 182 31-244 14-213 (213)
2 PF13532 2OG-FeII_Oxy_2: 2OG-F 100.0 1.2E-36 2.6E-41 254.1 14.3 178 38-242 1-194 (194)
3 TIGR00568 alkb DNA alkylation 100.0 8E-31 1.7E-35 214.6 16.3 156 43-226 2-169 (169)
4 COG3145 AlkB Alkylated DNA rep 100.0 7.4E-29 1.6E-33 205.2 15.7 179 32-239 12-194 (194)
5 KOG3200 Uncharacterized conser 99.9 1.7E-22 3.7E-27 162.1 12.2 177 38-244 13-214 (224)
6 KOG3959 2-Oxoglutarate- and ir 99.7 3.1E-18 6.8E-23 143.5 3.8 192 29-245 67-278 (306)
7 KOG4176 Uncharacterized conser 99.6 1.3E-14 2.7E-19 129.3 13.7 174 38-245 129-305 (323)
8 PF12933 FTO_NTD: FTO catalyti 99.4 3.9E-12 8.5E-17 107.8 11.1 167 51-244 31-251 (253)
9 PF03171 2OG-FeII_Oxy: 2OG-Fe( 98.0 9.6E-06 2.1E-10 60.0 4.4 84 127-243 1-96 (98)
10 PRK05467 Fe(II)-dependent oxyg 97.9 0.00072 1.6E-08 58.1 14.4 160 39-242 2-175 (226)
11 KOG2731 DNA alkylation damage 97.8 9.6E-06 2.1E-10 72.6 2.9 95 109-227 194-292 (378)
12 smart00702 P4Hc Prolyl 4-hydro 97.3 0.02 4.3E-07 46.9 15.4 159 38-242 2-176 (178)
13 PF13640 2OG-FeII_Oxy_3: 2OG-F 96.5 0.004 8.7E-08 45.9 4.4 86 130-241 1-97 (100)
14 PLN00052 prolyl 4-hydroxylase; 94.2 3.3 7.2E-05 37.3 15.3 103 26-149 45-152 (310)
15 TIGR01762 chlorin-enz chlorina 92.6 2.3 5E-05 37.8 11.6 41 200-244 207-247 (288)
16 PF12851 Tet_JBP: Oxygenase do 92.4 0.52 1.1E-05 38.7 6.8 37 202-241 128-167 (171)
17 PF08007 Cupin_4: Cupin superf 89.5 1.4 3.1E-05 39.7 7.4 85 128-228 112-198 (319)
18 PF13759 2OG-FeII_Oxy_5: Putat 87.7 3.7 8E-05 30.2 7.4 98 130-241 2-100 (101)
19 COG3128 PiuC Uncharacterized i 82.1 4.7 0.0001 33.7 6.0 36 201-242 143-178 (229)
20 PLN02904 oxidoreductase 80.1 6 0.00013 36.3 6.8 81 129-242 209-302 (357)
21 PLN03001 oxidoreductase, 2OG-F 78.9 4.7 0.0001 35.4 5.5 40 201-242 163-210 (262)
22 PLN02984 oxidoreductase, 2OG-F 78.6 9.6 0.00021 34.7 7.6 42 200-242 246-295 (341)
23 PF09859 Oxygenase-NA: Oxygena 78.6 30 0.00066 28.3 9.5 106 110-240 46-167 (173)
24 PLN02947 oxidoreductase 76.5 12 0.00027 34.5 7.8 40 201-242 272-319 (374)
25 PLN02216 protein SRG1 75.2 10 0.00022 34.8 6.8 40 201-242 258-305 (357)
26 PLN02515 naringenin,2-oxogluta 74.9 10 0.00022 34.8 6.7 40 201-242 244-291 (358)
27 PTZ00273 oxidase reductase; Pr 74.6 7.8 0.00017 34.8 5.8 39 201-242 226-272 (320)
28 PLN03002 oxidoreductase, 2OG-F 72.1 8.2 0.00018 35.0 5.4 40 200-242 234-281 (332)
29 COG3491 PcbC Isopenicillin N s 71.4 22 0.00047 32.1 7.7 42 200-241 221-268 (322)
30 PLN02485 oxidoreductase 69.1 12 0.00025 33.9 5.7 40 201-242 237-284 (329)
31 COG5285 Protein involved in bi 68.9 25 0.00055 31.4 7.5 39 201-244 192-230 (299)
32 PLN02156 gibberellin 2-beta-di 68.1 21 0.00045 32.5 7.1 43 200-242 227-275 (335)
33 PLN02997 flavonol synthase 67.8 16 0.00035 33.0 6.3 40 201-242 230-277 (325)
34 PLN02704 flavonol synthase 65.2 14 0.00031 33.4 5.5 40 201-242 246-293 (335)
35 PLN02750 oxidoreductase, 2OG-F 63.5 27 0.00058 31.8 6.9 41 200-242 241-289 (345)
36 PLN00417 oxidoreductase, 2OG-F 63.0 20 0.00044 32.7 6.0 40 201-242 251-298 (348)
37 PLN02912 oxidoreductase, 2OG-F 62.2 27 0.00059 31.8 6.7 40 201-242 244-291 (348)
38 PLN02393 leucoanthocyanidin di 61.7 24 0.00051 32.4 6.3 41 200-242 260-308 (362)
39 PLN02365 2-oxoglutarate-depend 61.7 21 0.00045 31.8 5.8 41 200-242 198-246 (300)
40 PLN02639 oxidoreductase, 2OG-F 58.5 35 0.00076 30.9 6.8 43 200-242 237-285 (337)
41 PLN02254 gibberellin 3-beta-di 58.2 31 0.00067 31.7 6.4 41 200-242 257-305 (358)
42 TIGR02466 conserved hypothetic 56.9 18 0.0004 30.4 4.3 102 127-242 95-197 (201)
43 KOG0143 Iron/ascorbate family 56.7 43 0.00093 30.3 6.9 82 129-242 177-272 (322)
44 PLN02276 gibberellin 20-oxidas 55.2 42 0.00091 30.8 6.7 43 200-242 252-300 (361)
45 KOG1591 Prolyl 4-hydroxylase a 52.7 1.2E+02 0.0025 27.2 8.9 19 38-56 98-116 (289)
46 KOG2107 Uncharacterized conser 49.6 36 0.00078 27.9 4.6 42 158-222 95-136 (179)
47 PLN02299 1-aminocyclopropane-1 49.4 37 0.00081 30.6 5.3 43 200-242 205-253 (321)
48 PLN02758 oxidoreductase, 2OG-F 48.8 56 0.0012 30.0 6.5 41 200-242 259-307 (361)
49 PLN03178 leucoanthocyanidin di 46.6 51 0.0011 30.2 5.9 41 200-242 257-305 (360)
50 COG2850 Uncharacterized conser 45.9 1.1E+02 0.0024 28.3 7.7 113 109-242 101-213 (383)
51 PF03079 ARD: ARD/ARD' family; 44.6 44 0.00094 27.0 4.5 40 161-223 97-136 (157)
52 PF05118 Asp_Arg_Hydrox: Aspar 42.9 66 0.0014 25.9 5.4 81 125-242 77-158 (163)
53 PRK10572 DNA-binding transcrip 39.1 1.2E+02 0.0027 26.2 7.0 66 123-220 16-85 (290)
54 PF12088 DUF3565: Protein of u 38.9 23 0.00049 23.9 1.7 23 142-169 1-23 (61)
55 KOG3706 Uncharacterized conser 33.3 63 0.0014 31.0 4.2 78 130-218 317-397 (629)
56 PF13621 Cupin_8: Cupin-like d 31.5 54 0.0012 27.4 3.3 98 131-242 132-244 (251)
57 KOG2731 DNA alkylation damage 28.1 21 0.00046 32.7 0.2 47 126-174 313-362 (378)
58 COG1917 Uncharacterized conser 26.7 2.6E+02 0.0056 21.0 6.2 59 126-219 40-99 (131)
59 TIGR03037 anthran_nbaC 3-hydro 26.5 2.8E+02 0.006 22.5 6.4 60 131-222 30-90 (159)
60 PLN02403 aminocyclopropanecarb 25.3 1.9E+02 0.004 25.9 5.7 40 201-242 201-249 (303)
61 PF07883 Cupin_2: Cupin domain 23.2 1.3E+02 0.0029 19.5 3.5 54 134-222 4-57 (71)
62 PRK13264 3-hydroxyanthranilate 22.8 4.4E+02 0.0096 21.8 9.4 59 132-222 37-96 (177)
63 COG3751 EGL-9 Predicted prolin 20.4 3.8E+02 0.0082 23.5 6.5 98 130-240 138-235 (252)
No 1
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional
Probab=100.00 E-value=3.1e-37 Score=259.79 Aligned_cols=182 Identities=21% Similarity=0.342 Sum_probs=146.4
Q ss_pred EeCCCCceeEEeCCCCCHHHHHHHHHHHHh---cCCCcCceeeeCCeEEeeccee-----EEecCCCccceeecCCC-CC
Q 025911 31 VDLGNGSEVIYFPRIIKMEDSWKFFDYLNN---RIPWNRPTIRVFGRSCLQPRDT-----CYVASEGVTQLIYSGYR-PH 101 (246)
Q Consensus 31 ~~l~~g~~~~~~~~fl~~~ea~~L~~~l~~---~~~W~~~~~~~~G~~~~~pR~~-----~~~~~~~~~~y~ysg~~-~~ 101 (246)
..+.+| +.++++|. .+++..|++.|.+ ..+|.+ ..++|+..+++|.+ .|+++.. .|.|++.. ..
T Consensus 14 ~~~~~g--~~~~~~~~-~~~~~~l~~~~~~~~~~~p~~~--~~~~gg~~msv~mt~~G~~~W~~d~~--~YrYs~~~~~~ 86 (213)
T PRK15401 14 EPLAPG--AVLLRGFA-LAAAEALLAAIEAVAAQAPFRH--MVTPGGYTMSVAMTNCGALGWVTDRR--GYRYSPIDPLT 86 (213)
T ss_pred eecCCC--cEEeCCCC-HHHHHHHHHHHHHHHhcCCccc--eecCCCCcceeEEeccccceEecCCC--CcccCCcCCCC
Confidence 346655 89999995 8888999999987 899988 56788888999999 8999863 49999875 46
Q ss_pred CCCCCCCch-HHHHHHHHHhh--cCCCCCceeeeeeecCCCCCccccccCC-CccCCCCeEEEEEcCCceeeEEeeCCCC
Q 025911 102 PYSWDDFPP-LKDILDIVLKV--LPGSRFNSLLLNRYKGGNDYVGWHADDE-KLYGSTPEIASVSFGCERDFLLKIKPSK 177 (246)
Q Consensus 102 ~~~w~~~P~-L~~il~~~~~~--~~~~~~n~~lvN~Y~~g~~~I~~H~D~~-~~~g~~~~IaslSLG~~r~f~fr~~~~~ 177 (246)
..+|+++|. |.++.+++... ..+..||+||||+|++|+ +|+||+|+. ..+ +++|||||||++|.|.|++...+
T Consensus 87 ~~pwp~~P~~l~~L~~~~~~~~~~~~~~p~a~LvN~Y~~G~-~mg~H~D~~E~~~--~~pI~SvSLG~~~~F~~~~~~~~ 163 (213)
T PRK15401 87 GKPWPAMPASFLALAQRAAAAAGFPGFQPDACLINRYAPGA-KLSLHQDKDERDF--RAPIVSVSLGLPAVFQFGGLKRS 163 (213)
T ss_pred CCCCCCchHHHHHHHHHHHHHcCCCCCCCCEEEEEeccCcC-ccccccCCCcccC--CCCEEEEeCCCCeEEEecccCCC
Confidence 789998886 67766655322 123489999999999998 999999964 433 46899999999999999865332
Q ss_pred CCCCCCCCCchhhhhhhccCCCcceEEEcCCCcEEEEccCccceeeccccccCCCC-----CceEEEecccc
Q 025911 178 SYQDRRTDDEPVSKRLKKKGNLDQHSFTLKHGSMLVMRGYTQRDWIHSVPRRAKAE-----STRINLTFRHV 244 (246)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~gsllvM~g~~q~~w~H~Ip~~~~~~-----~~RIslTFR~~ 244 (246)
+ .+.+|.|++|||+||.|++|. |.|+|++.+... .+|||||||.+
T Consensus 164 ~---------------------~~~~l~L~~Gdllvm~G~sr~-~~HgVp~~~~~~~p~~g~~RINLTFR~~ 213 (213)
T PRK15401 164 D---------------------PLQRILLEHGDVVVWGGPSRL-RYHGILPLKAGEHPLTGECRINLTFRKA 213 (213)
T ss_pred C---------------------ceEEEEeCCCCEEEECchHhh-eeccCCcCCCCcCCCCCCCeEEEEeEcC
Confidence 1 357899999999999999987 559999976433 37999999975
No 2
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A ....
Probab=100.00 E-value=1.2e-36 Score=254.11 Aligned_cols=178 Identities=34% Similarity=0.609 Sum_probs=128.9
Q ss_pred eeEEeCCCCCHHHHHHHHHHHHhcCCCcCceeeeCCeEEeecce----eEEecCCCccceeecCC-CCCCCCCCCCch-H
Q 025911 38 EVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQPRD----TCYVASEGVTQLIYSGY-RPHPYSWDDFPP-L 111 (246)
Q Consensus 38 ~~~~~~~fl~~~ea~~L~~~l~~~~~W~~~~~~~~G~~~~~pR~----~~~~~~~~~~~y~ysg~-~~~~~~w~~~P~-L 111 (246)
|++|++|||+++|+.+|+++|.+..+|.+.+... |+.+..+|. ..|++.. . .|.|++. .....+|+++|. |
T Consensus 1 G~~~~~~fls~~e~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~-~y~y~~~~~~~~~~~~~~p~~l 77 (194)
T PF13532_consen 1 GLYYIPNFLSEEEAAELLNELRESAPFRQPTYPM-GKVYSLPRKLCGGLSWVGDG-P-SYRYSGKRPVRSKPWPPFPEWL 77 (194)
T ss_dssp -EEEETTSS-HHHHHHHHHHHHHHS--B-GCCCC-CCECCECCE-SSEEEEEECT----CCCTCC-EECCCEBSCCHHHH
T ss_pred CEEEECCCCCHHHHHHHHHHHHhhCCCcCCeEcC-CCEEccceecceeeEEECCC-C-CeEcCCccccCCCCCCCccHHH
Confidence 5899999999999999999999889998876654 777766655 3466543 3 4889886 455667887775 7
Q ss_pred HHHHHHHHhhc---CCCCCceeeeeeecCCCCCccccccCCCccCCCCeEEEEEcCCceeeEEeeCCCCCCCCCCCCCch
Q 025911 112 KDILDIVLKVL---PGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKSYQDRRTDDEP 188 (246)
Q Consensus 112 ~~il~~~~~~~---~~~~~n~~lvN~Y~~g~~~I~~H~D~~~~~g~~~~IaslSLG~~r~f~fr~~~~~~~~~~~~~~~~ 188 (246)
.++++++.+.. .+..||+|+||+|.+|+ +|++|+|++.. +.+++||+||||++|.|.|+.....
T Consensus 78 ~~~~~~~~~~~~~~~~~~~n~~liN~Y~~g~-~i~~H~D~~~~-~~~~~I~slSLG~~~~~~f~~~~~~----------- 144 (194)
T PF13532_consen 78 SRLLERLVEATGIPPGWRPNQCLINYYRDGS-GIGPHSDDEEY-GFGPPIASLSLGSSRVFRFRNKSDD----------- 144 (194)
T ss_dssp HHHHHHHHHHHT-SHSS--SEEEEEEESSTT--EEEE---TTC--CCSEEEEEEEES-EEEEEEECGGT-----------
T ss_pred HHHHHHHHHHhccccCCCCCEEEEEecCCCC-CcCCCCCcccc-cCCCcEEEEEEccCceEEEeeccCC-----------
Confidence 78877775432 35789999999999999 99999999955 5677999999999999999975432
Q ss_pred hhhhhhccCCCcceEEEcCCCcEEEEccCccceeeccccccCC-------CCCceEEEecc
Q 025911 189 VSKRLKKKGNLDQHSFTLKHGSMLVMRGYTQRDWIHSVPRRAK-------AESTRINLTFR 242 (246)
Q Consensus 189 ~~~~~~~~~~~~~~~i~L~~gsllvM~g~~q~~w~H~Ip~~~~-------~~~~RIslTFR 242 (246)
...+.+.|++|||+||.|++|+.| |+|++.+. ..+.|||||||
T Consensus 145 ----------~~~~~~~L~~gsl~vm~g~~r~~~-H~I~~~~~~~~~~~~~~~~RislTfR 194 (194)
T PF13532_consen 145 ----------DEPIEVPLPPGSLLVMSGEARYDW-HGIPPVKKDTHPSHYVRGRRISLTFR 194 (194)
T ss_dssp ----------S-EEEEEE-TTEEEEEETTHHHHE-EEE-S-SCEEEESTEE-S-EEEEEEE
T ss_pred ----------CccEEEEcCCCCEEEeChHHhhhe-eEcccccCCccccccCCCCEEEEEeC
Confidence 246889999999999999999999 99999865 46799999999
No 3
>TIGR00568 alkb DNA alkylation damage repair protein AlkB. Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999).
Probab=99.97 E-value=8e-31 Score=214.59 Aligned_cols=156 Identities=21% Similarity=0.341 Sum_probs=127.7
Q ss_pred CCCCCHHHHHHHHHHHHh---cCCCcCceeeeCCeEEeecceeE----EecCCCccceeecCCCC-CCCCCCCCch-HHH
Q 025911 43 PRIIKMEDSWKFFDYLNN---RIPWNRPTIRVFGRSCLQPRDTC----YVASEGVTQLIYSGYRP-HPYSWDDFPP-LKD 113 (246)
Q Consensus 43 ~~fl~~~ea~~L~~~l~~---~~~W~~~~~~~~G~~~~~pR~~~----~~~~~~~~~y~ysg~~~-~~~~w~~~P~-L~~ 113 (246)
.+|+...++.+|.+.++. ..+|++ .+.++|+.+..||+++ |+++ |.. |.|++..+ ...+|+++|. |.+
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~~w~~-~~~~~gk~~~~pr~~~~~l~W~~~-g~~-Y~ys~~~~~~~~~~p~~P~~L~~ 78 (169)
T TIGR00568 2 KRYFAFNAQEQLIRDINDVASQDPFRQ-YVTPGGYTMSVAMTNLGKLGWTTH-GQG-YLYSPKDPQTNKPWPAMPQDLGD 78 (169)
T ss_pred CCccChHHHHHHHHHHHHHhhcCCCcC-eEecCCeEeeehhhhcccceEEcC-CCc-ccCCCcccCCCCCCCCCCHHHHH
Confidence 578888888889987764 579999 4899999999999996 9998 564 99999876 4567876775 777
Q ss_pred HHHHHHhhcCC---CCCceeeeeeecCCCCCccccccCCCccCCCCeEEEEEcCCceeeEEeeCCCCCCCCCCCCCchhh
Q 025911 114 ILDIVLKVLPG---SRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKSYQDRRTDDEPVS 190 (246)
Q Consensus 114 il~~~~~~~~~---~~~n~~lvN~Y~~g~~~I~~H~D~~~~~g~~~~IaslSLG~~r~f~fr~~~~~~~~~~~~~~~~~~ 190 (246)
+.+++. ..++ ..||+||||+|++| |+||||+|. ..++.+++|||||||++|+|.|+++..++
T Consensus 79 L~~~v~-~~~g~~~~~~n~~LvN~Y~~G-d~mg~H~D~-~e~~~~~pI~SvSLG~~r~F~~~~~~~~~------------ 143 (169)
T TIGR00568 79 LCERVA-TAAGFPDFQPDACLVNRYAPG-ATLSLHQDR-DEPDLRAPLLSVSLGLPAIFLIGGLKRND------------ 143 (169)
T ss_pred HHHHHH-HHhCCCCCCCCEEEEEeecCC-Ccccccccc-ccccCCCCEEEEeCCCCEEEEecCCcCCC------------
Confidence 766653 3334 48999999999999 599999995 56677789999999999999998754321
Q ss_pred hhhhccCCCcceEEEcCCCcEEEEccCccceeeccc
Q 025911 191 KRLKKKGNLDQHSFTLKHGSMLVMRGYTQRDWIHSV 226 (246)
Q Consensus 191 ~~~~~~~~~~~~~i~L~~gsllvM~g~~q~~w~H~I 226 (246)
.+.+|.|++|||+||+|++|.. .|+|
T Consensus 144 ---------~~~~l~L~sGsllvM~G~sR~~-~Hgv 169 (169)
T TIGR00568 144 ---------PPKRLRLHSGDVVIMGGESRLA-FHGV 169 (169)
T ss_pred ---------ceEEEEeCCCCEEEECCchhcc-ccCC
Confidence 3578999999999999999985 6886
No 4
>COG3145 AlkB Alkylated DNA repair protein [DNA replication, recombination, and repair]
Probab=99.96 E-value=7.4e-29 Score=205.23 Aligned_cols=179 Identities=27% Similarity=0.470 Sum_probs=136.1
Q ss_pred eCCCCceeEEeCCCCCHHHHHHHH---HHHHhcCCCcCceeeeCCeEEeecceeEEecCCCccceeecCCCCCCC-CCCC
Q 025911 32 DLGNGSEVIYFPRIIKMEDSWKFF---DYLNNRIPWNRPTIRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHPY-SWDD 107 (246)
Q Consensus 32 ~l~~g~~~~~~~~fl~~~ea~~L~---~~l~~~~~W~~~~~~~~G~~~~~pR~~~~~~~~~~~~y~ysg~~~~~~-~w~~ 107 (246)
.+++| +.+.++|+ -.++..|+ ..+..+.+|.+..++.+|+.++++|..+|+++ -. .|.|++..+.+. +|++
T Consensus 12 ~~~~G--~~~~~~~~-~~~~~~l~~~l~~~~~~~P~~~~~~~~~g~~~sV~r~~~W~~d-~~-gy~y~~~~p~~~~p~p~ 86 (194)
T COG3145 12 QLAPG--AVILPGFL-LLTQGALVAALLFLLSQAPWFRPRRTPYGKPMSVPRLLGWVTD-RR-GYRYSLRSPLTGKPWPP 86 (194)
T ss_pred cCCCC--eEEEeccc-ccchHHHHHHHHHhcccCcccceeecCCCcEeeeeeccceecc-cc-cccccccccCCCCCCCc
Confidence 34444 77788887 33333343 44456899999999999999999999999987 33 488988776543 6654
Q ss_pred CchHHHHHHHHHhhcCCCCCceeeeeeecCCCCCccccccCCCccCCCCeEEEEEcCCceeeEEeeCCCCCCCCCCCCCc
Q 025911 108 FPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKSYQDRRTDDE 187 (246)
Q Consensus 108 ~P~L~~il~~~~~~~~~~~~n~~lvN~Y~~g~~~I~~H~D~~~~~g~~~~IaslSLG~~r~f~fr~~~~~~~~~~~~~~~ 187 (246)
+|.+...+.. ........+++||||+|++|+ +|+||.|.+..... ++|||||||++|.|.|++.....
T Consensus 87 l~~~~~~~~~-~~g~~~~~~ea~Lvn~Y~pGd-~ig~HqD~~e~~~~-~~v~slSLg~~~~F~~~~~~r~~--------- 154 (194)
T COG3145 87 LLALFHDLFG-AAGYPFEGPEAVLVNRYRPGA-SIGWHQDKDEEDDR-PPVASLSLGAPCIFRLRGRRRRG--------- 154 (194)
T ss_pred cHHHHHHHHH-HhcCCCCChhheeEEeccCCC-ccccccccccccCC-CceEEEecCCCeEEEeccccCCC---------
Confidence 4443332221 123334566779999999995 99999999887554 78999999999999999865421
Q ss_pred hhhhhhhccCCCcceEEEcCCCcEEEEccCccceeeccccccCCCCCceEEE
Q 025911 188 PVSKRLKKKGNLDQHSFTLKHGSMLVMRGYTQRDWIHSVPRRAKAESTRINL 239 (246)
Q Consensus 188 ~~~~~~~~~~~~~~~~i~L~~gsllvM~g~~q~~w~H~Ip~~~~~~~~RIsl 239 (246)
...++.|+|||++||.|.+|..|.|.||+.......||||
T Consensus 155 ------------~~~~~~L~~Gdvvvm~G~~r~~~~h~~p~~~~~~~~Rinl 194 (194)
T COG3145 155 ------------PGLRLRLEHGDVVVMGGPSRLAWHHIIPKTSRLTGQRINL 194 (194)
T ss_pred ------------CceeEEecCCCEEEecCCccccccccccccccCCcccccC
Confidence 3578999999999999999999999999987777788885
No 5
>KOG3200 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.89 E-value=1.7e-22 Score=162.09 Aligned_cols=177 Identities=22% Similarity=0.316 Sum_probs=127.1
Q ss_pred eeEEeCCCCCHHHHHHHHHHHHh--cCCCcCceeeeCCeEEeecceeEEecCCCccceeecCCCCCCCCCCCCchHHHHH
Q 025911 38 EVIYFPRIIKMEDSWKFFDYLNN--RIPWNRPTIRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDIL 115 (246)
Q Consensus 38 ~~~~~~~fl~~~ea~~L~~~l~~--~~~W~~~~~~~~G~~~~~pR~~~~~~~~~~~~y~ysg~~~~~~~w~~~P~L~~il 115 (246)
...||||||+++|++.++..+.. .-.|+... . .|++.|.|-. .-.|..++ ..+ |||..++
T Consensus 13 t~~YIPnfIt~EEe~~~lshIe~ap~pkW~~L~----N-----RRLqNyGGvv-----h~~glipe--elP--~wLq~~v 74 (224)
T KOG3200|consen 13 TMIYIPNFITEEEENLYLSHIENAPQPKWRVLA----N-----RRLQNYGGVV-----HKTGLIPE--ELP--PWLQYYV 74 (224)
T ss_pred eEEEcCCccChHHHHHHHHHHhcCCCchhHHHH----h-----hhhhhcCCcc-----ccCCcCcc--ccC--HHHHHHH
Confidence 68999999999999999998753 24687642 1 2445444421 11233322 222 4788877
Q ss_pred HHHHh-hcCCCCCceeeeeeecCCCCCccccccCCCccCCCCeEEEEEcCCceeeEEeeCCCCCCCCCCCCCchhhhhhh
Q 025911 116 DIVLK-VLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKSYQDRRTDDEPVSKRLK 194 (246)
Q Consensus 116 ~~~~~-~~~~~~~n~~lvN~Y~~g~~~I~~H~D~~~~~g~~~~IaslSLG~~r~f~fr~~~~~~~~~~~~~~~~~~~~~~ 194 (246)
+.+.. ++++...|++|||+|.+|+ +|.+|.|.+.+ .++|++||||+.+++.|......+.++...+.
T Consensus 75 ~kinnlglF~s~~NHVLVNeY~pgq-GImPHtDGPaf---~piVstiSlGsh~vldf~~p~r~e~~d~te~~-------- 142 (224)
T KOG3200|consen 75 DKINNLGLFKSPANHVLVNEYLPGQ-GIMPHTDGPAF---HPIVSTISLGSHTVLDFYDPVRQEVNDGTESK-------- 142 (224)
T ss_pred HHhhcccccCCCcceeEeecccCCC-CcCcCCCCCcc---cceEEEEecCCceEEecccccccccCCccccC--------
Confidence 76632 3455688999999999999 99999999988 56899999999999999763332221111110
Q ss_pred ccCCCcceEEEcCCCcEEEEccCccceeeccccccCC----------------------CCCceEEEecccc
Q 025911 195 KKGNLDQHSFTLKHGSMLVMRGYTQRDWIHSVPRRAK----------------------AESTRINLTFRHV 244 (246)
Q Consensus 195 ~~~~~~~~~i~L~~gsllvM~g~~q~~w~H~Ip~~~~----------------------~~~~RIslTFR~~ 244 (246)
.+-....+++.|++.||+|+.+++...+.|+|..... .+++|||||.|.|
T Consensus 143 dqp~R~~fsllleprslLilkd~aYtd~LHgIs~s~~d~l~~~~sna~ac~s~k~Gd~lvr~tRvSLTiR~V 214 (224)
T KOG3200|consen 143 DQPLRYLFSLLLEPRSLLILKDDAYTDFLHGISDSPTDCLNQVVSNALACSSRKDGDKLVRQTRVSLTIRLV 214 (224)
T ss_pred CCCccceeeeeeccceEEEEcCcHHHHHHhhcccChHHHHHHHhhhhhhccccCCcceeeecceeEEEEecc
Confidence 0112356789999999999999999999999976531 4799999999976
No 6
>KOG3959 consensus 2-Oxoglutarate- and iron-dependent dioxygenase-related proteins [General function prediction only]
Probab=99.72 E-value=3.1e-18 Score=143.50 Aligned_cols=192 Identities=15% Similarity=0.231 Sum_probs=122.0
Q ss_pred eEEeCCCCceeEEeCCCCCHHHHHHHHHHHHhcCCCcCc----eeeeCCeEEeecceeEEecCCCccceeecCCCCCCCC
Q 025911 29 MVVDLGNGSEVIYFPRIIKMEDSWKFFDYLNNRIPWNRP----TIRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHPYS 104 (246)
Q Consensus 29 ~~~~l~~g~~~~~~~~fl~~~ea~~L~~~l~~~~~W~~~----~~~~~G~~~~~pR~~~~~~~~~~~~y~ysg~~~~~~~ 104 (246)
+-+++| |+.+++||||.+|+.+|+..| +.++|.+. +.|.||.+++..++..-. ..
T Consensus 67 ~~~p~p---G~~lie~Fls~~Eea~l~~~~-D~~pW~~SQSGRRKQdyGPKvNFkk~Klkt-----------------~~ 125 (306)
T KOG3959|consen 67 GSIPIP---GLTLIENFLSESEEAKLLNMI-DTVPWAQSQSGRRKQDYGPKVNFKKKKLKT-----------------DT 125 (306)
T ss_pred CccccC---CeeehhhhhccchHhHHHHHh-ccCchhhhcccccccccCCccchhhhhhcc-----------------Cc
Confidence 556675 599999999999999999964 89999874 567777777665443211 12
Q ss_pred CCCCchHH-HHHHHHHhhcC---C-CCCceeeeeeecCCCCCccccccCCCccCCCCeEEEEEcCCceeeEEeeCC---C
Q 025911 105 WDDFPPLK-DILDIVLKVLP---G-SRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKP---S 176 (246)
Q Consensus 105 w~~~P~L~-~il~~~~~~~~---~-~~~n~~lvN~Y~~g~~~I~~H~D~~~~~g~~~~IaslSLG~~r~f~fr~~~---~ 176 (246)
|..+|... .+++++ +.++ | ++|.+|-+.|-+.-.++|.+|.||.+.||+. ++++++-.+-++.+-.+. +
T Consensus 126 F~G~P~~~~~v~rrm-~~yp~l~gfqp~EqCnLeYep~kgsaIdpH~DD~WiWGeR--lv~~n~l~d~vl~lc~~e~~~s 202 (306)
T KOG3959|consen 126 FVGMPEYADMVLRRM-SEYPVLKGFQPFEQCNLEYEPVKGSAIDPHQDDMWIWGER--LVRSNRLFDFVLKLCSKECLAS 202 (306)
T ss_pred ccCCchHHHHHHHHh-hccchhhccCcHHHcCcccccccCCccCccccchhhhhhh--eeehhhccHHHHHhhhhhhhcc
Confidence 22345433 333443 2222 2 3578886655553334999999999999986 777775444444443211 1
Q ss_pred CCCC-CCCCCCc-----hh--hhhhhccCCCcceEEEcCCCcEEEEccCccceeeccccccCCCCCceEEEeccccc
Q 025911 177 KSYQ-DRRTDDE-----PV--SKRLKKKGNLDQHSFTLKHGSMLVMRGYTQRDWIHSVPRRAKAESTRINLTFRHVL 245 (246)
Q Consensus 177 ~~~~-~~~~~~~-----~~--~~~~~~~~~~~~~~i~L~~gsllvM~g~~q~~w~H~Ip~~~~~~~~RIslTFR~~~ 245 (246)
...+ +.+.+.+ +. +-....-.......|++|++||+||.|++++.|+|+|-.+ +.+++||.+|||.+.
T Consensus 203 g~~nL~~~~s~~~e~l~~~li~~s~~~l~~~~~~~ipmP~rSLlvl~g~aRyqwkH~vlr~-hi~~RRvcvt~RE~~ 278 (306)
T KOG3959|consen 203 GIINLNTNFSESNEFLSINLINGSVMTLNKSFLCYIPMPHRSLLVLAGEARYQWKHGVLRH-HIRGRRVCVTMREAA 278 (306)
T ss_pred ceeeeccCccccccccchhhcccchhhhccceEEEeecCcceeEEeechhHhhHHHHHHHH-hhhhceeeeeHHhhh
Confidence 1100 1111110 00 0000011123456799999999999999999999999875 379999999999763
No 7
>KOG4176 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.60 E-value=1.3e-14 Score=129.29 Aligned_cols=174 Identities=20% Similarity=0.248 Sum_probs=122.2
Q ss_pred eeEEeCCCCCHHHHHHHHHHHHhcCCCcCceeeeCCeEEeecceeEEecCCCccceeecCCCCCC-CCCCCCch-HHHHH
Q 025911 38 EVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHP-YSWDDFPP-LKDIL 115 (246)
Q Consensus 38 ~~~~~~~fl~~~ea~~L~~~l~~~~~W~~~~~~~~G~~~~~pR~~~~~~~~~~~~y~ysg~~~~~-~~w~~~P~-L~~il 115 (246)
.+.++.+|++..++..|...+.++ .|.. ++.|+ .|.+..+| + ++.|....... .+-.++|. +..++
T Consensus 129 e~~~~~d~V~el~e~~l~~~~~~e-~~~~---~~~gk----~R~~iq~G---~-~f~y~~~~~d~~~~~~piPs~~~~ii 196 (323)
T KOG4176|consen 129 ELSLIVDFVTELEEKGLIGALVDE-TFTY---QESGK----HREVIQLG---Y-PFDYRTNNVDESKPVDPIPSLFKSII 196 (323)
T ss_pred hceehhhhhhhhHHhhhhcccccc-ccee---ecccc----ceeeeecC---c-eeccCCCcccccCccCCCchHHHHHH
Confidence 589999999999988877776433 2333 33343 24444554 2 25554322221 11234565 56777
Q ss_pred HHHHhh-cCCCCCceeeeeeecCCCCCccccccCCCccCCCCeEEEEEcCCceeeEEeeCCCCCCCCCCCCCchhhhhhh
Q 025911 116 DIVLKV-LPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKSYQDRRTDDEPVSKRLK 194 (246)
Q Consensus 116 ~~~~~~-~~~~~~n~~lvN~Y~~g~~~I~~H~D~~~~~g~~~~IaslSLG~~r~f~fr~~~~~~~~~~~~~~~~~~~~~~ 194 (246)
++++.. ++...+|+|+||.|.+|. +|.+|.|.+.+ ++ +|++|||-+++.|.|++....+.. +
T Consensus 197 ~rlv~~~~ip~~pd~~~iN~Ye~G~-~i~ph~~~~~F-~~--Pi~slS~lSe~~m~Fg~~~~~~~~---~---------- 259 (323)
T KOG4176|consen 197 DRLVSWRVIPERPDQCTINFYEPGD-GIPPHIDHSAF-LD--PISSLSFLSECTMEFGHGLLSDNI---G---------- 259 (323)
T ss_pred HHhhhhccCCCCCCeeEEEeeCCCC-CCCCCCChHHh-cC--ceEEEEeecceeEEecccccccCc---c----------
Confidence 776542 233479999999999998 99999966655 43 699999999999999986432211 0
Q ss_pred ccCCCcceEEEcCCCcEEEEccCccceeeccccccCCCCCceEEEeccccc
Q 025911 195 KKGNLDQHSFTLKHGSMLVMRGYTQRDWIHSVPRRAKAESTRINLTFRHVL 245 (246)
Q Consensus 195 ~~~~~~~~~i~L~~gsllvM~g~~q~~w~H~Ip~~~~~~~~RIslTFR~~~ 245 (246)
......++++.-|++++|.|..-.--+|+++. ..+.|||||||+++
T Consensus 260 --~~~g~~s~p~~~g~~lvi~~~~ad~~~~~~~~---~~~kRisitfrki~ 305 (323)
T KOG4176|consen 260 --NFRGSLSLPLRYGSVLVIRGRSADVAPHCIRP---SRNKRISITFRKIR 305 (323)
T ss_pred --ccccccccccccCeEEEeCCCcccccccccCC---CCCceEEEEEEEec
Confidence 01124679999999999999999999999999 88999999999875
No 8
>PF12933 FTO_NTD: FTO catalytic domain; InterPro: IPR024367 Alpha-ketoglutarate-dependent dioxygenase FTO, also known as Fat mass and obesity-associated protein, is a nucleus protein which belongs to the FTO family. This enzyme is a dioxygenase that repairs alkylated DNA and RNA by oxidative demethylation []. FTO activity is highest towards single-stranded RNA containing 3-methyluracil, followed by single-stranded DNA containing 3-methylthymine. FTO has low demethylase activity towards single-stranded DNA containing 1-methyladenine or 3-methylcytosine []. FTO has no activity towards 1-methylguanine. It has no detectable activity towards double-stranded DNA. FTO requires molecular oxygen, alpha-ketoglutarate and iron. FTO contributes to the regulation of the global metabolic rate, energy expenditure and energy homeostasis. It contributes to the regulation of body size and body fat accumulation as well []. This domain is the catalytic AlkB-like domain from the FTO protein []. This domain catalyses a demethylase activity with a preference for 3-methylthymidine.; PDB: 3LFM_A.
Probab=99.38 E-value=3.9e-12 Score=107.76 Aligned_cols=167 Identities=23% Similarity=0.315 Sum_probs=93.3
Q ss_pred HHHHHHHHHhcCCCcCceeeeCCeEEeecceeEEecCCCccceeecCCCCCCCCCCCC--------chHHHHHHHH---H
Q 025911 51 SWKFFDYLNNRIPWNRPTIRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHPYSWDDF--------PPLKDILDIV---L 119 (246)
Q Consensus 51 a~~L~~~l~~~~~W~~~~~~~~G~~~~~pR~~~~~~~~~~~~y~ysg~~~~~~~w~~~--------P~L~~il~~~---~ 119 (246)
.++-|..|++.--|.++.+++.||....+-.-...|++|+. |+|-+....+.||+.. |.+...++.+ .
T Consensus 31 vq~Af~tL~~~Gcf~~Dlvr~~~k~~~T~VsR~L~G~pG~T-YkYl~~RLFa~PW~~~~~~~~~~~~~i~~a~~al~~LN 109 (253)
T PF12933_consen 31 VQEAFDTLRKHGCFFRDLVRIGGKDSFTPVSRTLLGEPGCT-YKYLNTRLFAVPWPDEGSEIKYQSPEIRSACKALGKLN 109 (253)
T ss_dssp HHHHHHHHHHTT--B--EE-GGG--EE-SSEEEEEESTTBE-EEETTEEEE-EE-------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCchHHHHHhhCCccccceeehhhcCCCCce-eEecceeEEeccCCCCCcccccCChhHHHHHHHHHHHH
Confidence 44556667777889999999989877777666789999997 9999988888899732 2222222111 0
Q ss_pred -----------hh-----c-----CCCCCceeeeeeecC----------------CCCCccccccCCCccCCCCeEEEEE
Q 025911 120 -----------KV-----L-----PGSRFNSLLLNRYKG----------------GNDYVGWHADDEKLYGSTPEIASVS 162 (246)
Q Consensus 120 -----------~~-----~-----~~~~~n~~lvN~Y~~----------------g~~~I~~H~D~~~~~g~~~~IaslS 162 (246)
++ . ....||.+|||++.+ |+-+++||+|... .+.++||+.|
T Consensus 110 ~~L~~~~~~~l~~~~~~~~~~~~~~~~~fNvTLlN~MdP~~~~~~~LK~Ep~fgmGKmaVsWH~DenL--~~~StVAVY~ 187 (253)
T PF12933_consen 110 DYLCSRAVQALEGRRLARVEEDEVGSCEFNVTLLNYMDPSSQAMPDLKEEPYFGMGKMAVSWHHDENL--VERSTVAVYS 187 (253)
T ss_dssp HHHHHHHHHHHHHHH---------------EEEEEEE-S--S-SSS--B-SSS---BEEEEEE---SB---TT--EEEEE
T ss_pred HHHHHHHHHHHHhhccccccCCcccceeeehhhhhccCcccccccccccccccCCcceeeeecccccc--ccccceEEEE
Confidence 00 0 013699999999877 5668999999854 5678899888
Q ss_pred cCCc----e--eeEEeeCCCCCCCCCCCCCchhhhhhhccCCCcceEEEcCCCcEEEEccCccceeeccccccCCCCCce
Q 025911 163 FGCE----R--DFLLKIKPSKSYQDRRTDDEPVSKRLKKKGNLDQHSFTLKHGSMLVMRGYTQRDWIHSVPRRAKAESTR 236 (246)
Q Consensus 163 LG~~----r--~f~fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~gsllvM~g~~q~~w~H~Ip~~~~~~~~R 236 (246)
.-.+ . ..-|| ..+.+ .....++|+.||+|.|-++.+.+|+|||-. ...+|
T Consensus 188 ~s~~~~~~~~W~VgLk-a~D~~--------------------tP~L~vPL~sgd~Y~Mldd~N~tHqH~Vla---G~~~R 243 (253)
T PF12933_consen 188 YSCEEPEPADWHVGLK-AWDIE--------------------TPGLAVPLRSGDCYYMLDDFNATHQHCVLA---GSSAR 243 (253)
T ss_dssp EE-----TTSEEEEEE-TT--S--------------------S-EEEEEE-TT-EEEE-TTHHHHEEEEEE-----SS-E
T ss_pred ecCCCCCCCceEEEEe-ecCCC--------------------CCeeEEeccCCCeEEEccccchhhHHHHhc---CCCcc
Confidence 6552 1 12233 11111 145789999999999999999999999998 78899
Q ss_pred EEEecccc
Q 025911 237 INLTFRHV 244 (246)
Q Consensus 237 IslTFR~~ 244 (246)
+|-|-|..
T Consensus 244 fSSTHRVA 251 (253)
T PF12933_consen 244 FSSTHRVA 251 (253)
T ss_dssp EEEEEE-B
T ss_pred ccccceee
Confidence 99999964
No 9
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme has the activity (1.14.11.2 from EC) catalysing the reaction: Procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2. The full enzyme consists of a alpha2 beta2 complex with the alpha subunit contributing most of the parts of the active site []. The family also includes lysyl hydrolases, isopenicillin synthases and AlkB. ; GO: 0016491 oxidoreductase activity, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 3ON7_D 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=97.97 E-value=9.6e-06 Score=60.00 Aligned_cols=84 Identities=25% Similarity=0.325 Sum_probs=47.6
Q ss_pred Cceeeeeeec---CCCCCccccccCCCccCCCCeEEEEEcC-CceeeEEeeCCCCCCCCCCCCCchhhhhhhccCCCcce
Q 025911 127 FNSLLLNRYK---GGNDYVGWHADDEKLYGSTPEIASVSFG-CERDFLLKIKPSKSYQDRRTDDEPVSKRLKKKGNLDQH 202 (246)
Q Consensus 127 ~n~~lvN~Y~---~g~~~I~~H~D~~~~~g~~~~IaslSLG-~~r~f~fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (246)
++.+.+|+|. .+. ++++|.|... .+++|.+. ...-+.|..... ..
T Consensus 1 ~~~~~~~~Y~~~~~~~-~~~~H~D~~~------~~~Til~~~~~~gL~~~~~~~------------------------~~ 49 (98)
T PF03171_consen 1 PSQLRLNRYPPPENGV-GIGPHTDDED------GLLTILFQDEVGGLQVRDDGE------------------------WV 49 (98)
T ss_dssp --EEEEEEE-SCCGCE-EEEEEEES--------SSEEEEEETSTS-EEEEETTE------------------------EE
T ss_pred CCEEEEEECCCcccCC-ceeCCCcCCC------CeEEEEecccchheecccccc------------------------cc
Confidence 3678999999 777 9999999851 24444443 556677765321 12
Q ss_pred E-------EEcCCCc-EEEEccCccceeeccccccCCCCCceEEEeccc
Q 025911 203 S-------FTLKHGS-MLVMRGYTQRDWIHSVPRRAKAESTRINLTFRH 243 (246)
Q Consensus 203 ~-------i~L~~gs-llvM~g~~q~~w~H~Ip~~~~~~~~RIslTFR~ 243 (246)
. +.+.-|| |.+|+++....+.|+|... ..+.|+|+||+.
T Consensus 50 ~v~~~~~~~~v~~G~~l~~~t~g~~~~~~HrV~~~--~~~~R~s~~~f~ 96 (98)
T PF03171_consen 50 DVPPPPGGFIVNFGDALEILTNGRYPATLHRVVPP--TEGERYSLTFFL 96 (98)
T ss_dssp E----TTCEEEEEBHHHHHHTTTSS----EEEE----STS-EEEEEEEE
T ss_pred CccCccceeeeeceeeeecccCCccCCceeeeEcC--CCCCEEEEEEEE
Confidence 3 4444444 3445555788999999985 269999999974
No 10
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=97.85 E-value=0.00072 Score=58.05 Aligned_cols=160 Identities=19% Similarity=0.344 Sum_probs=82.6
Q ss_pred eEEeCCCCCHHHHHHHHHHHHhcCCCcCceeeeCCeEEeecceeEEecCCCccceeecCCCCCCCCCCCCchHHHHHHHH
Q 025911 39 VIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIV 118 (246)
Q Consensus 39 ~~~~~~fl~~~ea~~L~~~l~~~~~W~~~~~~~~G~~~~~pR~~~~~~~~~~~~y~ysg~~~~~~~w~~~P~L~~il~~~ 118 (246)
+..|+++||++|...|.+.+ +...|...... ..++.. .++-+.. . + ...|....+-+++
T Consensus 2 i~~I~~vLs~eec~~~~~~l-e~~~~~dg~~t-----------aG~~~~----~vKnN~q-l---~-~d~~~a~~l~~~i 60 (226)
T PRK05467 2 LLHIPDVLSPEEVAQIRELL-DAAEWVDGRVT-----------AGAQAA----QVKNNQQ-L---P-EDSPLARELGNLI 60 (226)
T ss_pred eeeecccCCHHHHHHHHHHH-HhcCCccCCcC-----------cCccch----hcccccc-c---C-CCCHHHHHHHHHH
Confidence 46789999999999999986 56789754221 112211 1221111 1 1 1112111111222
Q ss_pred Hhhc----------CCCCCceeeeeeecCCCCCccccccCCCccCCCC--eEEEEEcCCceeeEEee--CCCCCCCCCCC
Q 025911 119 LKVL----------PGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTP--EIASVSFGCERDFLLKI--KPSKSYQDRRT 184 (246)
Q Consensus 119 ~~~~----------~~~~~n~~lvN~Y~~g~~~I~~H~D~~~~~g~~~--~IaslSLG~~r~f~fr~--~~~~~~~~~~~ 184 (246)
...+ .+....-.+++.|..|. .-++|.|......++. .+ .+.+.|.- ....+..+
T Consensus 61 ~~~L~~~~l~~sa~lp~~i~~~~f~rY~~G~-~y~~H~D~~~~~~~~~~~~~-------rs~lS~~lyLnd~~~yeG--- 129 (226)
T PRK05467 61 LDALTRNPLFFSAALPRKIHPPLFNRYEGGM-SYGFHVDNAVRSLPGTGGRV-------RTDLSATLFLSDPDDYDG--- 129 (226)
T ss_pred HHHHhcCchhhhhccccccccceEEEECCCC-ccCccccCCcccCCCCCcce-------eEEEEEEEEeCCCCCCcC---
Confidence 1111 11122245789999998 9999999965421110 01 01111111 11110000
Q ss_pred CCchhhhhhhccCCCcceEEEcCCCcEEEEccCccceeeccccccCCCCCceEEEecc
Q 025911 185 DDEPVSKRLKKKGNLDQHSFTLKHGSMLVMRGYTQRDWIHSVPRRAKAESTRINLTFR 242 (246)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~i~L~~gsllvM~g~~q~~w~H~Ip~~~~~~~~RIslTFR 242 (246)
++..- .+......+.++.|+++++... ..|.|.+. ..+.|+++++-
T Consensus 130 -GEl~~-----~~~~g~~~Vkp~aG~~vlfps~----~lH~v~pV--t~G~R~~~~~W 175 (226)
T PRK05467 130 -GELVI-----EDTYGEHRVKLPAGDLVLYPST----SLHRVTPV--TRGVRVASFFW 175 (226)
T ss_pred -CceEE-----ecCCCcEEEecCCCeEEEECCC----Cceeeeec--cCccEEEEEec
Confidence 00000 0001235789999999999865 46999886 56889999874
No 11
>KOG2731 consensus DNA alkylation damage repair protein [RNA processing and modification]
Probab=97.85 E-value=9.6e-06 Score=72.64 Aligned_cols=95 Identities=23% Similarity=0.311 Sum_probs=68.8
Q ss_pred chHHHHHHHHHhhcCC---C-CCceeeeeeecCCCCCccccccCCCccCCCCeEEEEEcCCceeeEEeeCCCCCCCCCCC
Q 025911 109 PPLKDILDIVLKVLPG---S-RFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKSYQDRRT 184 (246)
Q Consensus 109 P~L~~il~~~~~~~~~---~-~~n~~lvN~Y~~g~~~I~~H~D~~~~~g~~~~IaslSLG~~r~f~fr~~~~~~~~~~~~ 184 (246)
|+|..+.+..+....+ . ....+|+|||..+. .++.|.|.-. ++...++.+.|||..+.|.+......+.
T Consensus 194 ~~ll~~~~~~~~~a~~~~~~~~~~Gli~nYlsi~~-tl~ih~d~re-ld~~~pf~s~s~g~~ai~lLg~m~l~e~----- 266 (378)
T KOG2731|consen 194 PSLLGLLREKVKAAKGFSHIVIRPGLIKNYLSIDD-TLGIHLDCRE-LDLSKPFYSPSLGQGAILLLGMMCLGEN----- 266 (378)
T ss_pred hHHhhhhhhhhhhhcCccceeccCcceeeecccCc-EEEEEeehhh-cccCCccccccccccceeeecccccCCC-----
Confidence 4565555443333223 1 23447999999998 9999999754 3556679999999999999976544321
Q ss_pred CCchhhhhhhccCCCcceEEEcCCCcEEEEccCccceeecccc
Q 025911 185 DDEPVSKRLKKKGNLDQHSFTLKHGSMLVMRGYTQRDWIHSVP 227 (246)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~i~L~~gsllvM~g~~q~~w~H~Ip 227 (246)
...+.|..||.++|.|..|.. .|+||
T Consensus 267 ----------------p~p~~lrsGdv~im~Gfsrlv-~haIp 292 (378)
T KOG2731|consen 267 ----------------PDPMTLRSGDVVIMDGFSRLV-EHAIP 292 (378)
T ss_pred ----------------CCccccccCceEeecchHHHH-hhccc
Confidence 245889999999999976655 89999
No 12
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=97.32 E-value=0.02 Score=46.85 Aligned_cols=159 Identities=16% Similarity=0.107 Sum_probs=83.8
Q ss_pred eeEEeCCCCCHHHHHHHHHHHHhcCCCcCceeee-CCeE-EeecceeEEecCCCccceeecCCCCCCCCCCC-CchHHHH
Q 025911 38 EVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRV-FGRS-CLQPRDTCYVASEGVTQLIYSGYRPHPYSWDD-FPPLKDI 114 (246)
Q Consensus 38 ~~~~~~~fl~~~ea~~L~~~l~~~~~W~~~~~~~-~G~~-~~~pR~~~~~~~~~~~~y~ysg~~~~~~~w~~-~P~L~~i 114 (246)
.+.+++|||+++|++.|++... ...| +..+.. .+.. ... .|+-+.... ..+.. .|....+
T Consensus 2 ~i~~~~~~ls~~ec~~li~~~~-~~~~-~~~~~~~~~~~~~~~-------------~~R~~~~~~--l~~~~~~~~~~~l 64 (178)
T smart00702 2 GVVVFHDFLSPAECQKLLEEAE-PLGW-RGEVTRGDTNPNHDS-------------KYRQSNGTW--LELLKGDLVIERI 64 (178)
T ss_pred cEEEECCCCCHHHHHHHHHHhh-hhcc-cceeecCCCCccccC-------------CCEeeccee--cCCCCCCHHHHHH
Confidence 5889999999999999988753 3345 222211 0100 000 122111100 00110 1233333
Q ss_pred HHHHHhhcCC------CCCceeeeeeecCCCCCccccccCCCccCCCCeEEEEEc-------CCceeeEEeeCCCCCCCC
Q 025911 115 LDIVLKVLPG------SRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSF-------GCERDFLLKIKPSKSYQD 181 (246)
Q Consensus 115 l~~~~~~~~~------~~~n~~lvN~Y~~g~~~I~~H~D~~~~~g~~~~IaslSL-------G~~r~f~fr~~~~~~~~~ 181 (246)
.+++. .+++ .....+.+..|..|+ ...+|.|..........++++.+ |+.-.| -....
T Consensus 65 ~~~i~-~~~~~~~~~~~~~~~~~~~~Y~~g~-~~~~H~D~~~~~~~~~r~~T~~~yLn~~~~GG~~~f--~~~~~----- 135 (178)
T smart00702 65 RQRLA-DFLGLLRGLPLSAEDAQVARYGPGG-HYGPHVDNFEDDENGDRIATFLLYLNDVEEGGELVF--PGLGL----- 135 (178)
T ss_pred HHHHH-HHHCCCchhhccCcceEEEEECCCC-cccCcCCCCCCCCCCCeEEEEEEEeccCCcCceEEe--cCCCC-----
Confidence 33332 2222 223557888999998 99999998653211122333322 222111 10000
Q ss_pred CCCCCchhhhhhhccCCCcceEEEcCCCcEEEEccCccceeeccccccCCCCCceEEEecc
Q 025911 182 RRTDDEPVSKRLKKKGNLDQHSFTLKHGSMLVMRGYTQRDWIHSVPRRAKAESTRINLTFR 242 (246)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~i~L~~gsllvM~g~~q~~w~H~Ip~~~~~~~~RIslTFR 242 (246)
.....+....|+++++....- ...|++.+. ..+.|++++..
T Consensus 136 -----------------~~~~~v~P~~G~~v~f~~~~~-~~~H~v~pv--~~G~r~~~~~W 176 (178)
T smart00702 136 -----------------MVCATVKPKKGDLLFFPSGRG-RSLHGVCPV--TRGSRWAITGW 176 (178)
T ss_pred -----------------ccceEEeCCCCcEEEEeCCCC-CccccCCcc--eeCCEEEEEEE
Confidence 123468889999999875522 457899885 34889999864
No 13
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=96.53 E-value=0.004 Score=45.89 Aligned_cols=86 Identities=20% Similarity=0.264 Sum_probs=50.0
Q ss_pred eeeeeecCCCCCccccccCCCccCCCCeEEEEEcCC-c-----eeeEEeeCCCCCCCCCCCCCchhhhhhhccCCCcceE
Q 025911 130 LLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGC-E-----RDFLLKIKPSKSYQDRRTDDEPVSKRLKKKGNLDQHS 203 (246)
Q Consensus 130 ~lvN~Y~~g~~~I~~H~D~~~~~g~~~~IaslSLG~-~-----r~f~fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (246)
|-++.|.+|. .++||.|.... .....-+.|.|.. . -.+.|....... .....
T Consensus 1 ~~~~~y~~G~-~~~~H~D~~~~-~~~~~t~llyL~~~~~~~~GG~l~~~~~~~~~--------------------~~~~~ 58 (100)
T PF13640_consen 1 MQLNRYPPGG-FFGPHTDNSYD-PHRRVTLLLYLNDPEWEFEGGELEFYPSKDSD--------------------DVSRE 58 (100)
T ss_dssp -EEEEEETTE-EEEEEESSSCC-CSEEEEEEEESS-CS-HCEE--EEETTTS-TS--------------------STCEE
T ss_pred CEEEEECcCC-EEeeeECCCCC-CcceEEEEEEECCCCcccCCCEEEEeccccCC--------------------CcceE
Confidence 4688999999 99999999431 1111222333542 1 334443211000 01122
Q ss_pred EE-----cCCCcEEEEccCccceeeccccccCCCCCceEEEec
Q 025911 204 FT-----LKHGSMLVMRGYTQRDWIHSVPRRAKAESTRINLTF 241 (246)
Q Consensus 204 i~-----L~~gsllvM~g~~q~~w~H~Ip~~~~~~~~RIslTF 241 (246)
+. ...|+++++.+ ....|+|.+. ...+.|++|++
T Consensus 59 ~~~~~~~p~~g~~v~F~~---~~~~H~v~~v-~~~~~R~~l~~ 97 (100)
T PF13640_consen 59 VEDFDIVPKPGRLVIFPS---DNSLHGVTPV-GEGGRRYSLTF 97 (100)
T ss_dssp EGGGSEE-BTTEEEEEES---CTCEEEEEEE--EESEEEEEEE
T ss_pred EEeccccCCCCEEEEEeC---CCCeecCccc-CCCCCEEEEEE
Confidence 33 88999999999 6678999985 34799999986
No 14
>PLN00052 prolyl 4-hydroxylase; Provisional
Probab=94.16 E-value=3.3 Score=37.29 Aligned_cols=103 Identities=12% Similarity=0.065 Sum_probs=55.3
Q ss_pred ccceEEeCCCCceeEEeCCCCCHHHHHHHHHHHHhcCCCcCceeee--CCeEEeecceeEEecCCCccceeecCCCCCCC
Q 025911 26 KQRMVVDLGNGSEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRV--FGRSCLQPRDTCYVASEGVTQLIYSGYRPHPY 103 (246)
Q Consensus 26 ~~~~~~~l~~g~~~~~~~~fl~~~ea~~L~~~l~~~~~W~~~~~~~--~G~~~~~pR~~~~~~~~~~~~y~ysg~~~~~~ 103 (246)
-|-+.+.+. +-|.+++||||++|.+.|++.- +..+.+..+.. .|+...+..++. ......
T Consensus 45 ~kve~lS~~--P~i~~~~nfLs~~Ecd~Li~la--~~~l~~S~v~~~~~g~~~~s~~RTS-------------~~~~l~- 106 (310)
T PLN00052 45 SRVKAVSWQ--PRIFVYKGFLSDAECDHLVKLA--KKKIQRSMVADNKSGKSVMSEVRTS-------------SGMFLD- 106 (310)
T ss_pred ceEEEecCC--CCEEEECCcCCHHHHHHHHHhc--ccccccceeecCCCCccccCCCEEe-------------cceeec-
Confidence 344555554 4699999999999999998743 33344432211 122222211221 100000
Q ss_pred CCCCCchHHHHHHHHHhhcCCCCC---ceeeeeeecCCCCCccccccCC
Q 025911 104 SWDDFPPLKDILDIVLKVLPGSRF---NSLLLNRYKGGNDYVGWHADDE 149 (246)
Q Consensus 104 ~w~~~P~L~~il~~~~~~~~~~~~---n~~lvN~Y~~g~~~I~~H~D~~ 149 (246)
.. ..|.+..|.+++. .+++... ....|-.|..|+ ...+|.|-.
T Consensus 107 ~~-~dpvv~~I~~Ria-~~t~lp~~~~E~lQVlrY~~Gq-~Y~~H~D~~ 152 (310)
T PLN00052 107 KR-QDPVVSRIEERIA-AWTFLPEENAENIQILRYEHGQ-KYEPHFDYF 152 (310)
T ss_pred CC-CCHHHHHHHHHHH-HHhCCCcccCcceEEEecCCCC-CCCCCCCcc
Confidence 00 1245666655553 3334332 345667899998 899999954
No 15
>TIGR01762 chlorin-enz chlorinating enzymes. This model represents a a group of highly homologous enzymes related to dioxygenases which chlorinate amino acid methyl groups. BarB1 and BarB2 are proposed to trichlorinate one of the methyl groups of a leucine residue in the biosynthesis of barbamide in the cyanobacterium Lyngbya majuscula. SyrB2 is proposed to chlorinate the methyl group of threonine in the biosynthesis of syringomycin in Pseudomonas syringae. CmaB is proposed to chlorinate the beta-methyl group of alloisoleucine in the process of ring closure in the biosynthesis of coronamic acid, a component of coronatine also in Pseudomonas syringae.
Probab=92.56 E-value=2.3 Score=37.81 Aligned_cols=41 Identities=15% Similarity=0.286 Sum_probs=30.9
Q ss_pred cceEEEcCCCcEEEEccCccceeeccccccCCCCCceEEEecccc
Q 025911 200 DQHSFTLKHGSMLVMRGYTQRDWIHSVPRRAKAESTRINLTFRHV 244 (246)
Q Consensus 200 ~~~~i~L~~gsllvM~g~~q~~w~H~Ip~~~~~~~~RIslTFR~~ 244 (246)
..+.+.++.||+++|++-+ .|+-.+......+|+++++|.+
T Consensus 207 ~~v~~~lkaGd~~~f~~~t----~HgS~~N~S~~~~R~~~~~ry~ 247 (288)
T TIGR01762 207 SAVPMQMKAGQFIIFWSTL----MHASYPNSGESQMRMGFASRYV 247 (288)
T ss_pred ceeeeeeCCceEEEECCCc----eecCCCCCCCCceEEEEEEEEc
Confidence 3567999999999998875 4666554333457999999975
No 16
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro []. Interestingly TET2 is considered as an oncogene, as it is found mutated in some types of cancer []. This entry represents the double-stranded beta helix (DSBH) fold of the 2-oxoglutarate (2OG) - Fe(II) oxygenases. DSBH comprises a part of the catalytic domain in TETS. It is found in many organisms including fruit fly, African malaria mosquito, zebrafish, mouse and human.
Probab=92.41 E-value=0.52 Score=38.68 Aligned_cols=37 Identities=27% Similarity=0.480 Sum_probs=30.5
Q ss_pred eEEEcCCCcEEEEccCccceeeccccccC---CCCCceEEEec
Q 025911 202 HSFTLKHGSMLVMRGYTQRDWIHSVPRRA---KAESTRINLTF 241 (246)
Q Consensus 202 ~~i~L~~gsllvM~g~~q~~w~H~Ip~~~---~~~~~RIslTF 241 (246)
+.+.+.|||++++.+. ...|++.+.. ...+.||||.|
T Consensus 128 ~~~~~~~GtVl~~~~~---~~~Hgvtpv~~~~~~~~~R~slvf 167 (171)
T PF12851_consen 128 VAFAYQPGTVLIFCAK---RELHGVTPVESPNRNHGTRISLVF 167 (171)
T ss_pred EEEecCCCcEEEEccc---ceeeecCcccCCCCCCCeEEEEEE
Confidence 6799999999999876 4689999854 23489999987
No 17
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=89.53 E-value=1.4 Score=39.65 Aligned_cols=85 Identities=20% Similarity=0.289 Sum_probs=46.2
Q ss_pred ceeeeeee--cCCCCCccccccCCCccCCCCeEEEEEcCCceeeEEeeCCCCCCCCCCCCCchhhhhhhccCCCcceEEE
Q 025911 128 NSLLLNRY--KGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKSYQDRRTDDEPVSKRLKKKGNLDQHSFT 205 (246)
Q Consensus 128 n~~lvN~Y--~~g~~~I~~H~D~~~~~g~~~~IaslSLG~~r~f~fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 205 (246)
..|.+|.| ++|+.++++|.|+.. +.+|-+.+.....+......... .....+.. .. .......++.
T Consensus 112 ~~~~~n~Y~tp~g~~g~~~H~D~~d-------vfvlQ~~G~K~W~l~~~~~~~~~--~~~~~~~~-~~--~~~~~~~~~~ 179 (319)
T PF08007_consen 112 CPVGANAYLTPPGSQGFGPHYDDHD-------VFVLQLEGRKRWRLYPPPDEPAP--LYSDQPFK-QL--EEFEPVEEVV 179 (319)
T ss_dssp S-EEEEEEEETSSBEESECEE-SSE-------EEEEEEES-EEEEEE-SCCCTTT--SSCE--TT-TC--G--STSEEEE
T ss_pred cccceEEEecCCCCCCccCEECCcc-------cEEEECCceeEEEECCCCccccc--ccCCCCcc-cc--ccCceeEEEE
Confidence 66899999 466569999999853 77788888899998762111110 00000000 00 0012456899
Q ss_pred cCCCcEEEEccCccceeeccccc
Q 025911 206 LKHGSMLVMRGYTQRDWIHSVPR 228 (246)
Q Consensus 206 L~~gsllvM~g~~q~~w~H~Ip~ 228 (246)
|.+||+|.|+.+ |-|....
T Consensus 180 L~pGD~LYlPrG----~~H~~~~ 198 (319)
T PF08007_consen 180 LEPGDVLYLPRG----WWHQAVT 198 (319)
T ss_dssp E-TT-EEEE-TT-----EEEEEE
T ss_pred ECCCCEEEECCC----ccCCCCC
Confidence 999999999876 4455544
No 18
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=87.73 E-value=3.7 Score=30.21 Aligned_cols=98 Identities=15% Similarity=0.202 Sum_probs=43.5
Q ss_pred eeeeeecCCCCCccccccCCCccCCCCeEEEEEcCCce-eeEEeeCCCCCCCCCCCCCchhhhhhhccCCCcceEEEcCC
Q 025911 130 LLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCER-DFLLKIKPSKSYQDRRTDDEPVSKRLKKKGNLDQHSFTLKH 208 (246)
Q Consensus 130 ~lvN~Y~~g~~~I~~H~D~~~~~g~~~~IaslSLG~~r-~f~fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ 208 (246)
|-+|.++.|. ...+|.-....+. .|.=|.+.... .+.|........-. .+...............+....
T Consensus 2 ~W~ni~~~g~-~~~~H~H~~s~~S---gVyYv~~p~~~~~l~f~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~p~~ 72 (101)
T PF13759_consen 2 SWANIYRKGG-YNEPHNHPNSWLS---GVYYVQVPEGSGPLRFHDPRGSFSFG-----APFDNYDQNDLNSPYYIVEPEE 72 (101)
T ss_dssp EEEEEE-TT---EEEE--TT-SEE---EEEECE--TTS-SEEEE-TTCCCGTT-----S----TTTTCCC-SEEEE---T
T ss_pred eeEEEeCCCC-ccCceECCCcCEE---EEEEEECCCCCCceeeeCCCccceec-----ccccccccCcccCceEEeCCCC
Confidence 5678899887 8999987655431 34445544422 35554321111000 0000000001123456799999
Q ss_pred CcEEEEccCccceeeccccccCCCCCceEEEec
Q 025911 209 GSMLVMRGYTQRDWIHSVPRRAKAESTRINLTF 241 (246)
Q Consensus 209 gsllvM~g~~q~~w~H~Ip~~~~~~~~RIslTF 241 (246)
|+|+|+.+-. .|+|.+.. ....||||.|
T Consensus 73 G~lvlFPs~l----~H~v~p~~-~~~~Risisf 100 (101)
T PF13759_consen 73 GDLVLFPSWL----WHGVPPNN-SDEERISISF 100 (101)
T ss_dssp TEEEEEETTS----EEEE-----SSS-EEEEEE
T ss_pred CEEEEeCCCC----EEeccCcC-CCCCEEEEEc
Confidence 9999998664 58888754 4578999987
No 19
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]
Probab=82.12 E-value=4.7 Score=33.72 Aligned_cols=36 Identities=19% Similarity=0.363 Sum_probs=28.7
Q ss_pred ceEEEcCCCcEEEEccCccceeeccccccCCCCCceEEEecc
Q 025911 201 QHSFTLKHGSMLVMRGYTQRDWIHSVPRRAKAESTRINLTFR 242 (246)
Q Consensus 201 ~~~i~L~~gsllvM~g~~q~~w~H~Ip~~~~~~~~RIslTFR 242 (246)
...+.|+-|||++..+.+ .|+|.+. .++.|+.+-|-
T Consensus 143 ~h~VklPAGdLVlypStS----lH~VtPV--TRg~R~asffW 178 (229)
T COG3128 143 NHRVKLPAGDLVLYPSTS----LHEVTPV--TRGERFASFFW 178 (229)
T ss_pred ceEEeccCCCEEEccccc----ceecccc--ccCceEEEeee
Confidence 366999999999998876 5888885 57889887663
No 20
>PLN02904 oxidoreductase
Probab=80.11 E-value=6 Score=36.29 Aligned_cols=81 Identities=12% Similarity=0.123 Sum_probs=50.6
Q ss_pred eeeeeeecCC-----CCCccccccCCCccCCCCeEEEEEcCCceeeEEeeCCCCCCCCCCCCCchhhhhhhccCCCcceE
Q 025911 129 SLLLNRYKGG-----NDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKSYQDRRTDDEPVSKRLKKKGNLDQHS 203 (246)
Q Consensus 129 ~~lvN~Y~~g-----~~~I~~H~D~~~~~g~~~~IaslSLG~~r~f~fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (246)
..-+|+|++- .-+++.|.|... |..| +....=+.+....+ ..+.
T Consensus 209 ~lrl~~YPp~p~~~~~~g~~~HtD~g~-------lTlL-~qd~~GLQV~~~~g-----------------------~Wi~ 257 (357)
T PLN02904 209 VMAVNCYPACPEPEIALGMPPHSDFGS-------LTIL-LQSSQGLQIMDCNK-----------------------NWVC 257 (357)
T ss_pred EEEeeecCCCCCcccccCCcCccCCCc-------eEEE-ecCCCeeeEEeCCC-----------------------CEEE
Confidence 4678999752 336789999743 2222 11122344443211 3577
Q ss_pred EEcCCCcEEEEccCcccee--------eccccccCCCCCceEEEecc
Q 025911 204 FTLKHGSMLVMRGYTQRDW--------IHSVPRRAKAESTRINLTFR 242 (246)
Q Consensus 204 i~L~~gsllvM~g~~q~~w--------~H~Ip~~~~~~~~RIslTFR 242 (246)
++..+|+++|--|++-+.| .|.|... ....|+||.|-
T Consensus 258 V~p~pgalVVNiGD~Le~~TNG~~kSt~HRVv~~--~~~~R~Si~~F 302 (357)
T PLN02904 258 VPYIEGALIVQLGDQVEVMSNGIYKSVVHRVTVN--KDYKRLSFASL 302 (357)
T ss_pred CCCCCCeEEEEccHHHHHHhCCeeeccCCcccCC--CCCCEEEEEEe
Confidence 8889999999999977776 4555431 34679999874
No 21
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=78.90 E-value=4.7 Score=35.35 Aligned_cols=40 Identities=10% Similarity=0.042 Sum_probs=30.3
Q ss_pred ceEEEcCCCcEEEEccCccceee--------ccccccCCCCCceEEEecc
Q 025911 201 QHSFTLKHGSMLVMRGYTQRDWI--------HSVPRRAKAESTRINLTFR 242 (246)
Q Consensus 201 ~~~i~L~~gsllvM~g~~q~~w~--------H~Ip~~~~~~~~RIslTFR 242 (246)
.+.+.-.+|+++|.-|++-+.|. |.|... ....|+||.|-
T Consensus 163 Wi~V~p~p~a~vVNiGD~l~~~tng~~~S~~HRVv~~--~~~~R~Sia~F 210 (262)
T PLN03001 163 WLMVPPISDAILIIIADQTEIITNGNYKSAQHRAIAN--ANKARLSVATF 210 (262)
T ss_pred EEECCCCCCcEEEEccHHHHHHhCCccccccceEEcC--CCCCEEEEEEE
Confidence 56677888999999999888887 555431 35679999874
No 22
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=78.61 E-value=9.6 Score=34.74 Aligned_cols=42 Identities=14% Similarity=0.194 Sum_probs=31.8
Q ss_pred cceEEEcCCCcEEEEccCccceee--------ccccccCCCCCceEEEecc
Q 025911 200 DQHSFTLKHGSMLVMRGYTQRDWI--------HSVPRRAKAESTRINLTFR 242 (246)
Q Consensus 200 ~~~~i~L~~gsllvM~g~~q~~w~--------H~Ip~~~~~~~~RIslTFR 242 (246)
..+.++..+|+++|.-|++-+.|. |.|... .....|+|+.|-
T Consensus 246 ~Wv~V~p~pgalVVNiGD~Le~wTNg~~kSt~HRVv~~-~~~~~R~Sia~F 295 (341)
T PLN02984 246 EWFNVKPIANTLVVNLGDMMQVISDDEYKSVLHRVGKR-NKKKERYSICYF 295 (341)
T ss_pred ceEECCCCCCeEEEECChhhhhhcCCeeeCCCCccccC-CCCCCeEEEEEE
Confidence 357788899999999999888887 888311 135679999774
No 23
>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function.
Probab=78.57 E-value=30 Score=28.29 Aligned_cols=106 Identities=21% Similarity=0.241 Sum_probs=60.9
Q ss_pred hHHHHHHHHHhhcCCCCCceeeeeeecCCCCCccccccCCCccCCCCeEEEEEcCCc------eeeEEeeCCCCCCCCCC
Q 025911 110 PLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCE------RDFLLKIKPSKSYQDRR 183 (246)
Q Consensus 110 ~L~~il~~~~~~~~~~~~n~~lvN~Y~~g~~~I~~H~D~~~~~g~~~~IaslSLG~~------r~f~fr~~~~~~~~~~~ 183 (246)
.+.++++++.+ .|+.=-..|+..|..|. ....|.|-..... -|.=+.+-|..+ -.|.+..-..
T Consensus 46 ~~~~fl~~ch~--aGQ~rptplllrY~~gd-yn~LHqdlyGe~v-FPlQvv~lLs~Pg~DftGGEFVltEQrP------- 114 (173)
T PF09859_consen 46 TLAEFLARCHA--AGQTRPTPLLLRYGPGD-YNCLHQDLYGEHV-FPLQVVILLSEPGEDFTGGEFVLTEQRP------- 114 (173)
T ss_pred cHHHHHHHHHh--ccCCCCchhhheeCCCC-ccccccCCCCCcc-cCeEEEEEcCCCCCcccCceEEEEEecC-------
Confidence 57777776633 24433334778899887 9999999744221 122222222211 1233322111
Q ss_pred CCCchhhhhhhccCCCcceEEEcCCCcEEEEccC----------ccceeeccccccCCCCCceEEEe
Q 025911 184 TDDEPVSKRLKKKGNLDQHSFTLKHGSMLVMRGY----------TQRDWIHSVPRRAKAESTRINLT 240 (246)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~i~L~~gsllvM~g~----------~q~~w~H~Ip~~~~~~~~RIslT 240 (246)
.. +.....++|..||.+|+.-. .+..-+|+|... ..+.|..|.
T Consensus 115 ----------R~--QSR~~V~~L~qGda~if~t~~RPv~G~rG~yRv~~RHgVS~v--rsG~R~tLg 167 (173)
T PF09859_consen 115 ----------RM--QSRAMVLPLRQGDALIFATNHRPVRGARGYYRVNMRHGVSRV--RSGERHTLG 167 (173)
T ss_pred ----------Cc--cCccccCCcCCCCEEEEecCCCCcCCCccceecccccccccc--cccceEEEE
Confidence 11 12345699999999999643 456678888875 467787764
No 24
>PLN02947 oxidoreductase
Probab=76.50 E-value=12 Score=34.45 Aligned_cols=40 Identities=20% Similarity=0.150 Sum_probs=28.4
Q ss_pred ceEEEcCCCcEEEEccCccceee--------ccccccCCCCCceEEEecc
Q 025911 201 QHSFTLKHGSMLVMRGYTQRDWI--------HSVPRRAKAESTRINLTFR 242 (246)
Q Consensus 201 ~~~i~L~~gsllvM~g~~q~~w~--------H~Ip~~~~~~~~RIslTFR 242 (246)
.+.++..+|.++|--|++-+.|. |.|... ....|+||.|-
T Consensus 272 Wi~V~p~pga~VVNvGD~Lq~~SNG~~kS~~HRVv~~--~~~~R~Sia~F 319 (374)
T PLN02947 272 WVTVEPIPGSFVVNVGDHLEIFSNGRYKSVLHRVRVN--STKPRISVASL 319 (374)
T ss_pred EEeCCCCCCeEEEEeCceeeeeeCCEEeccccccccC--CCCCEEEEEEE
Confidence 56677788888888888776665 555321 35679999874
No 25
>PLN02216 protein SRG1
Probab=75.24 E-value=10 Score=34.78 Aligned_cols=40 Identities=15% Similarity=0.023 Sum_probs=30.2
Q ss_pred ceEEEcCCCcEEEEccCccceee--------ccccccCCCCCceEEEecc
Q 025911 201 QHSFTLKHGSMLVMRGYTQRDWI--------HSVPRRAKAESTRINLTFR 242 (246)
Q Consensus 201 ~~~i~L~~gsllvM~g~~q~~w~--------H~Ip~~~~~~~~RIslTFR 242 (246)
.+.++-.+|.++|.-|++-+.|. |.|... ....|+||.|-
T Consensus 258 Wi~V~p~pgalvVNiGD~L~~~TNG~~kS~~HRVv~~--~~~~R~Si~~F 305 (357)
T PLN02216 258 WVSVKPLPNALVVNVGDILEIITNGTYRSIEHRGVVN--SEKERLSVATF 305 (357)
T ss_pred EEECCCCCCeEEEEcchhhHhhcCCeeeccCceeecC--CCCCEEEEEEE
Confidence 56677888999999898887776 776432 35679999874
No 26
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase
Probab=74.92 E-value=10 Score=34.82 Aligned_cols=40 Identities=13% Similarity=0.117 Sum_probs=29.4
Q ss_pred ceEEEcCCCcEEEEccCccceee--------ccccccCCCCCceEEEecc
Q 025911 201 QHSFTLKHGSMLVMRGYTQRDWI--------HSVPRRAKAESTRINLTFR 242 (246)
Q Consensus 201 ~~~i~L~~gsllvM~g~~q~~w~--------H~Ip~~~~~~~~RIslTFR 242 (246)
.+.++..+|+++|--|++-+.|. |.|... ....|+||.|-
T Consensus 244 Wi~Vpp~pgalVVNiGD~L~~~TNG~~kSt~HRVv~~--~~~~R~Si~~F 291 (358)
T PLN02515 244 WITVQPVEGAFVVNLGDHGHYLSNGRFKNADHQAVVN--SNCSRLSIATF 291 (358)
T ss_pred EEECCCCCCeEEEEccHHHHHHhCCeeeeecceEECC--CCCCEEEEEEE
Confidence 56788889999999999777775 554321 35679999874
No 27
>PTZ00273 oxidase reductase; Provisional
Probab=74.61 E-value=7.8 Score=34.81 Aligned_cols=39 Identities=23% Similarity=0.283 Sum_probs=28.8
Q ss_pred ceEEEcCCCcEEEEccCcccee--------eccccccCCCCCceEEEecc
Q 025911 201 QHSFTLKHGSMLVMRGYTQRDW--------IHSVPRRAKAESTRINLTFR 242 (246)
Q Consensus 201 ~~~i~L~~gsllvM~g~~q~~w--------~H~Ip~~~~~~~~RIslTFR 242 (246)
.+.++..+|+++|.-|++-+.| .|.|.. ....|+||.|-
T Consensus 226 Wi~V~p~pg~lvVNvGD~l~~~TnG~~kSt~HRVv~---~~~~R~Si~~F 272 (320)
T PTZ00273 226 WMDVPPLEGSFVVNIGDMMEMWSNGRYRSTPHRVVN---TGVERYSMPFF 272 (320)
T ss_pred EEeCCCCCCeEEEEHHHHHHHHHCCeeeCCCccccC---CCCCeEEEEEE
Confidence 5678888999999988876665 455543 35679999874
No 28
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=72.12 E-value=8.2 Score=34.98 Aligned_cols=40 Identities=20% Similarity=0.288 Sum_probs=31.4
Q ss_pred cceEEEcCCCcEEEEccCccceee--------ccccccCCCCCceEEEecc
Q 025911 200 DQHSFTLKHGSMLVMRGYTQRDWI--------HSVPRRAKAESTRINLTFR 242 (246)
Q Consensus 200 ~~~~i~L~~gsllvM~g~~q~~w~--------H~Ip~~~~~~~~RIslTFR 242 (246)
..+.++..+|+++|--|++-+.|. |.|.. ....|+||.|-
T Consensus 234 ~Wi~Vpp~pg~~VVNiGD~L~~wTng~~kSt~HRVv~---~~~~R~Sia~F 281 (332)
T PLN03002 234 KWEYVPPIKGAFIVNLGDMLERWSNGFFKSTLHRVLG---NGQERYSIPFF 281 (332)
T ss_pred cEEECCCCCCeEEEEHHHHHHHHhCCeeECcCCeecC---CCCCeeEEEEE
Confidence 356677888999999999888886 88875 34579999874
No 29
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only]
Probab=71.36 E-value=22 Score=32.08 Aligned_cols=42 Identities=17% Similarity=0.274 Sum_probs=29.3
Q ss_pred cceEEEcCCCcEEEEccCccceeeccccccC-----CCC-CceEEEec
Q 025911 200 DQHSFTLKHGSMLVMRGYTQRDWIHSVPRRA-----KAE-STRINLTF 241 (246)
Q Consensus 200 ~~~~i~L~~gsllvM~g~~q~~w~H~Ip~~~-----~~~-~~RIslTF 241 (246)
....+...+|+|+|--|++-+.|.-+.-+.. ... ..|+|+-|
T Consensus 221 ~Wl~v~P~pgtlvVNiGdmLe~~Tng~lrST~HRV~~~~~~~R~Sipf 268 (322)
T COG3491 221 GWLDVPPIPGTLVVNIGDMLERWTNGRLRSTVHRVRNPPGVDRYSIPF 268 (322)
T ss_pred CeeECCCCCCeEEEeHHHHHHHHhCCeeccccceeecCCCccceeeee
Confidence 4577889999999999988777764433211 033 48999876
No 30
>PLN02485 oxidoreductase
Probab=69.09 E-value=12 Score=33.86 Aligned_cols=40 Identities=18% Similarity=0.180 Sum_probs=30.6
Q ss_pred ceEEEcCCCcEEEEccCccceee--------ccccccCCCCCceEEEecc
Q 025911 201 QHSFTLKHGSMLVMRGYTQRDWI--------HSVPRRAKAESTRINLTFR 242 (246)
Q Consensus 201 ~~~i~L~~gsllvM~g~~q~~w~--------H~Ip~~~~~~~~RIslTFR 242 (246)
.+.++..+|.++|--|++-+.|. |.|... ....|+||.|-
T Consensus 237 Wi~V~p~pg~~vVNiGD~L~~~TnG~~~St~HRVv~~--~~~~R~Si~~F 284 (329)
T PLN02485 237 WIWAIPIPGTFVCNIGDMLKIWSNGVYQSTLHRVINN--SPKYRVCVAFF 284 (329)
T ss_pred EEECCCCCCcEEEEhHHHHHHHHCCEeeCCCceecCC--CCCCeEEEEEE
Confidence 56788899999999999888887 666532 34569999874
No 31
>COG5285 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=68.86 E-value=25 Score=31.39 Aligned_cols=39 Identities=21% Similarity=0.367 Sum_probs=29.2
Q ss_pred ceEEEcCCCcEEEEccCccceeeccccccCCCCCceEEEecccc
Q 025911 201 QHSFTLKHGSMLVMRGYTQRDWIHSVPRRAKAESTRINLTFRHV 244 (246)
Q Consensus 201 ~~~i~L~~gsllvM~g~~q~~w~H~Ip~~~~~~~~RIslTFR~~ 244 (246)
...+.|+.||++++.+..- |+-.... ....|+++||+.+
T Consensus 192 ~~pv~lekGDallF~~~L~----HaA~aNr-T~~~R~A~~~~~~ 230 (299)
T COG5285 192 AVPVELEKGDALLFNGSLW----HAAGANR-TSADRVALTLQFT 230 (299)
T ss_pred ceeeeecCCCEEEEcchhh----hhhhcCC-CCcccceEEEEEe
Confidence 4679999999999999854 5544432 2378999999865
No 32
>PLN02156 gibberellin 2-beta-dioxygenase
Probab=68.15 E-value=21 Score=32.46 Aligned_cols=43 Identities=16% Similarity=0.221 Sum_probs=30.3
Q ss_pred cceEEEcCCCcEEEEccCccceeeccccccC------CCCCceEEEecc
Q 025911 200 DQHSFTLKHGSMLVMRGYTQRDWIHSVPRRA------KAESTRINLTFR 242 (246)
Q Consensus 200 ~~~~i~L~~gsllvM~g~~q~~w~H~Ip~~~------~~~~~RIslTFR 242 (246)
..+.++-.+|.++|--|++-+.|..+.-+.. .....|+|+.|-
T Consensus 227 ~Wi~Vpp~pga~VVNiGD~l~~wTNg~~kSt~HRVv~~~~~~R~SiafF 275 (335)
T PLN02156 227 TWVDVPPDHSSFFVLVGDTLQVMTNGRFKSVKHRVVTNTKRSRISMIYF 275 (335)
T ss_pred CEEEccCCCCcEEEEhHHHHHHHhCCeeeccceeeecCCCCCEEEEEEe
Confidence 3577888999999999998777765433211 134569999874
No 33
>PLN02997 flavonol synthase
Probab=67.81 E-value=16 Score=33.02 Aligned_cols=40 Identities=15% Similarity=0.143 Sum_probs=29.9
Q ss_pred ceEEEcCCCcEEEEccCccceee--------ccccccCCCCCceEEEecc
Q 025911 201 QHSFTLKHGSMLVMRGYTQRDWI--------HSVPRRAKAESTRINLTFR 242 (246)
Q Consensus 201 ~~~i~L~~gsllvM~g~~q~~w~--------H~Ip~~~~~~~~RIslTFR 242 (246)
.+.++..+|+++|--|++-+.|. |.|... ....|+|+.|-
T Consensus 230 Wi~V~p~pgalvVNiGD~Le~~TNG~~kSt~HRVv~~--~~~~R~Si~fF 277 (325)
T PLN02997 230 WLDLNYINSAVVVIIGDQLMRMTNGRFKNVLHRAKTD--KERLRISWPVF 277 (325)
T ss_pred EEECCCCCCeEEEEechHHHHHhCCccccccceeeCC--CCCCEEEEEEE
Confidence 56788889999999999777776 666531 34569999874
No 34
>PLN02704 flavonol synthase
Probab=65.22 E-value=14 Score=33.38 Aligned_cols=40 Identities=13% Similarity=0.095 Sum_probs=29.9
Q ss_pred ceEEEcCCCcEEEEccCccceee--------ccccccCCCCCceEEEecc
Q 025911 201 QHSFTLKHGSMLVMRGYTQRDWI--------HSVPRRAKAESTRINLTFR 242 (246)
Q Consensus 201 ~~~i~L~~gsllvM~g~~q~~w~--------H~Ip~~~~~~~~RIslTFR 242 (246)
.+.++..+|+++|--|++-+.|. |.|.. .....|+||.|-
T Consensus 246 Wi~V~p~pg~lvVNvGD~L~~~TNg~~kSt~HRVv~--~~~~~R~Si~~F 293 (335)
T PLN02704 246 WFDVKYIPNALVIHIGDQIEILSNGKYKSVLHRTTV--NKEKTRMSWPVF 293 (335)
T ss_pred EEeCCCCCCeEEEEechHHHHHhCCeeecccceeec--CCCCCeEEEEEE
Confidence 56788889999999999877776 44432 135679999874
No 35
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=63.47 E-value=27 Score=31.76 Aligned_cols=41 Identities=15% Similarity=0.284 Sum_probs=29.5
Q ss_pred cceEEEcCCCcEEEEccCccceee--------ccccccCCCCCceEEEecc
Q 025911 200 DQHSFTLKHGSMLVMRGYTQRDWI--------HSVPRRAKAESTRINLTFR 242 (246)
Q Consensus 200 ~~~~i~L~~gsllvM~g~~q~~w~--------H~Ip~~~~~~~~RIslTFR 242 (246)
..+.++..+|+++|--|++-+.|. |.|... ....|+||.|-
T Consensus 241 ~Wi~V~p~pg~~vVNiGD~L~~~Tng~~~St~HRVv~~--~~~~R~Si~~F 289 (345)
T PLN02750 241 EWIPVKPIPDAFIINIGNCMQVWTNDLYWSAEHRVVVN--SQKERFSIPFF 289 (345)
T ss_pred eEEEccCCCCeEEEEhHHHHHHHhCCeeecccceeccC--CCCCEEEEEEe
Confidence 357788899999999998766665 444321 35679999874
No 36
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=62.98 E-value=20 Score=32.67 Aligned_cols=40 Identities=18% Similarity=0.116 Sum_probs=29.3
Q ss_pred ceEEEcCCCcEEEEccCccceee--------ccccccCCCCCceEEEecc
Q 025911 201 QHSFTLKHGSMLVMRGYTQRDWI--------HSVPRRAKAESTRINLTFR 242 (246)
Q Consensus 201 ~~~i~L~~gsllvM~g~~q~~w~--------H~Ip~~~~~~~~RIslTFR 242 (246)
.+.++..+|+++|--|++-+.|. |.|... ....|+||.|-
T Consensus 251 Wi~V~p~pg~lVVNiGD~Le~~Tng~~kSt~HRVv~~--~~~~R~Si~fF 298 (348)
T PLN00417 251 WYKAPIVPDTILINVGDQMEIMSNGIYKSPVHRVVTN--REKERISVATF 298 (348)
T ss_pred EEECCCCCCcEEEEcChHHHHHhCCeecccceEEecC--CCCCEEEEEEE
Confidence 56788889999999899877776 444321 34679999874
No 37
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=62.21 E-value=27 Score=31.84 Aligned_cols=40 Identities=13% Similarity=0.067 Sum_probs=28.2
Q ss_pred ceEEEcCCCcEEEEccCccceee--------ccccccCCCCCceEEEecc
Q 025911 201 QHSFTLKHGSMLVMRGYTQRDWI--------HSVPRRAKAESTRINLTFR 242 (246)
Q Consensus 201 ~~~i~L~~gsllvM~g~~q~~w~--------H~Ip~~~~~~~~RIslTFR 242 (246)
.+.++..+|.++|--|++-+.|. |.|.. .....|+||.|-
T Consensus 244 Wi~V~p~pgalvVNiGD~L~~~TNG~~kSt~HRVv~--~~~~~R~Sia~F 291 (348)
T PLN02912 244 WIAVNPIPNTFIVNLGDQMQVISNDKYKSVLHRAVV--NTDKERISIPTF 291 (348)
T ss_pred EEECCCcCCeEEEEcCHHHHHHhCCEEEcccccccC--CCCCCEEEEEEE
Confidence 56678888999988888766664 45432 135679999874
No 38
>PLN02393 leucoanthocyanidin dioxygenase like protein
Probab=61.74 E-value=24 Score=32.42 Aligned_cols=41 Identities=17% Similarity=0.132 Sum_probs=30.0
Q ss_pred cceEEEcCCCcEEEEccCcccee--------eccccccCCCCCceEEEecc
Q 025911 200 DQHSFTLKHGSMLVMRGYTQRDW--------IHSVPRRAKAESTRINLTFR 242 (246)
Q Consensus 200 ~~~~i~L~~gsllvM~g~~q~~w--------~H~Ip~~~~~~~~RIslTFR 242 (246)
..+.++..+|+++|.-|++-+.| .|.|... ....|+|+.|-
T Consensus 260 ~W~~V~p~pgalVVNiGD~l~~~Tng~~kSt~HRVv~~--~~~~R~SiafF 308 (362)
T PLN02393 260 AWITVKPVPDAFIVNIGDQIQVLSNAIYKSVEHRVIVN--SAKERVSLAFF 308 (362)
T ss_pred EEEECCCCCCeEEEEcchhhHhhcCCeeeccceecccC--CCCCEEEEEEE
Confidence 35678888999999999987777 3555321 34679999874
No 39
>PLN02365 2-oxoglutarate-dependent dioxygenase
Probab=61.71 E-value=21 Score=31.80 Aligned_cols=41 Identities=24% Similarity=0.330 Sum_probs=29.8
Q ss_pred cceEEEcCCCcEEEEccCccceee--------ccccccCCCCCceEEEecc
Q 025911 200 DQHSFTLKHGSMLVMRGYTQRDWI--------HSVPRRAKAESTRINLTFR 242 (246)
Q Consensus 200 ~~~~i~L~~gsllvM~g~~q~~w~--------H~Ip~~~~~~~~RIslTFR 242 (246)
..+.++..+|.++|.-|++-+.|. |.|.. .....|+||.|-
T Consensus 198 ~Wi~V~p~pga~vVNiGD~l~~~TNG~~~St~HRVv~--~~~~~R~Si~~F 246 (300)
T PLN02365 198 EFVPVDPLPGTLLVNLGDVATAWSNGRLCNVKHRVQC--KEATMRISIASF 246 (300)
T ss_pred eEEecCCCCCeEEEEhhHHHHHHhCCceecccceeEc--CCCCCEEEEEEE
Confidence 356788899999999999877774 44432 124569999874
No 40
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=58.53 E-value=35 Score=30.91 Aligned_cols=43 Identities=7% Similarity=0.102 Sum_probs=29.8
Q ss_pred cceEEEcCCCcEEEEccCccceeeccccccC------CCCCceEEEecc
Q 025911 200 DQHSFTLKHGSMLVMRGYTQRDWIHSVPRRA------KAESTRINLTFR 242 (246)
Q Consensus 200 ~~~~i~L~~gsllvM~g~~q~~w~H~Ip~~~------~~~~~RIslTFR 242 (246)
..+.++..+|+++|--|++-+.|..+.-+.. .....|+|+.|-
T Consensus 237 ~Wi~V~p~pg~lVVNiGD~L~~~TNG~~kSt~HRVv~~~~~~R~Sia~F 285 (337)
T PLN02639 237 KWVAVNPHPGAFVINIGDQLQALSNGRYKSVWHRAVVNTDKERMSVASF 285 (337)
T ss_pred eEEeccCCCCeEEEechhHHHHHhCCeeeccCcccccCCCCCEEEEEEE
Confidence 3567888999999999997777654332211 135679999874
No 41
>PLN02254 gibberellin 3-beta-dioxygenase
Probab=58.16 E-value=31 Score=31.66 Aligned_cols=41 Identities=17% Similarity=0.129 Sum_probs=29.2
Q ss_pred cceEEEcCCCcEEEEccCccceee--------ccccccCCCCCceEEEecc
Q 025911 200 DQHSFTLKHGSMLVMRGYTQRDWI--------HSVPRRAKAESTRINLTFR 242 (246)
Q Consensus 200 ~~~~i~L~~gsllvM~g~~q~~w~--------H~Ip~~~~~~~~RIslTFR 242 (246)
..+.+.-.+|.++|--|++-+.|. |.|.. .....|+|+.|-
T Consensus 257 ~Wi~V~p~pgalVVNiGD~lq~~SNg~~kS~~HRVv~--~~~~~R~Sia~F 305 (358)
T PLN02254 257 GWVTVPPVPGSLVVNVGDLLHILSNGRFPSVLHRAVV--NKTRHRISVAYF 305 (358)
T ss_pred EEEEcccCCCCEEEEhHHHHHHHhCCeeccccceeec--CCCCCEEEEEEE
Confidence 357788889999999998766665 44432 135679999874
No 42
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=56.89 E-value=18 Score=30.43 Aligned_cols=102 Identities=15% Similarity=0.142 Sum_probs=54.7
Q ss_pred CceeeeeeecCCCCCccccccCCCccCCCCeEEEEEcC-CceeeEEeeCCCCCCCCCCCCCchhhhhhhccCCCcceEEE
Q 025911 127 FNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFG-CERDFLLKIKPSKSYQDRRTDDEPVSKRLKKKGNLDQHSFT 205 (246)
Q Consensus 127 ~n~~lvN~Y~~g~~~I~~H~D~~~~~g~~~~IaslSLG-~~r~f~fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 205 (246)
+..+-+|.+..|. ..+.|.-....+ +.|.=|+.- ....+.|............. ..+.. + ......+.+.
T Consensus 95 i~~~W~ni~~~Gg-~h~~H~Hp~~~l---SgvyYl~~p~~~g~~~f~~p~~~~~~~~~~-~~~~~---~-~~~~~~~~v~ 165 (201)
T TIGR02466 95 IQKAWVNILPQGG-THSPHLHPGSVI---SGTYYVQTPENCGAIKFEDPRLDDMMAAPM-RIPNA---K-RAVQRFVYVP 165 (201)
T ss_pred EeeEeEEEcCCCC-ccCceECCCceE---EEEEEEeCCCCCCceeEecCcchhhhcccc-ccCcc---c-cccCccEEEC
Confidence 4568899999988 888888765432 123333331 12334443211100000000 00000 0 0011234577
Q ss_pred cCCCcEEEEccCccceeeccccccCCCCCceEEEecc
Q 025911 206 LKHGSMLVMRGYTQRDWIHSVPRRAKAESTRINLTFR 242 (246)
Q Consensus 206 L~~gsllvM~g~~q~~w~H~Ip~~~~~~~~RIslTFR 242 (246)
...|+|+++..-. .|+|++-. ..+.||||.|=
T Consensus 166 P~~G~lvlFPS~L----~H~v~p~~-~~~~RISiSFN 197 (201)
T TIGR02466 166 PQEGRVLLFESWL----RHEVPPNE-SEEERISVSFN 197 (201)
T ss_pred CCCCeEEEECCCC----ceecCCCC-CCCCEEEEEEe
Confidence 8999999997765 48888843 36899999883
No 43
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=56.71 E-value=43 Score=30.27 Aligned_cols=82 Identities=20% Similarity=0.132 Sum_probs=48.7
Q ss_pred eeeeeeecCC-----CCCccccccCCCccCCCCeEEEEEcC-CceeeEEeeCCCCCCCCCCCCCchhhhhhhccCCCcce
Q 025911 129 SLLLNRYKGG-----NDYVGWHADDEKLYGSTPEIASVSFG-CERDFLLKIKPSKSYQDRRTDDEPVSKRLKKKGNLDQH 202 (246)
Q Consensus 129 ~~lvN~Y~~g-----~~~I~~H~D~~~~~g~~~~IaslSLG-~~r~f~fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (246)
...+|+|++- .-+++.|+|... |.+|--- .--=+.+..+ ++ ..+
T Consensus 177 ~~r~n~Yp~cp~pe~~lGl~~HtD~~~-------lTiLlqd~~V~GLQv~~~-dg----------------------~Wi 226 (322)
T KOG0143|consen 177 VMRLNYYPPCPEPELTLGLGAHTDKSF-------LTILLQDDDVGGLQVFTK-DG----------------------KWI 226 (322)
T ss_pred EEEEeecCCCcCccccccccCccCcCc-------eEEEEccCCcCceEEEec-CC----------------------eEE
Confidence 5689999753 458999999743 2222111 1122333321 11 356
Q ss_pred EEEcCCCcEEEEccCccceee--------ccccccCCCCCceEEEecc
Q 025911 203 SFTLKHGSMLVMRGYTQRDWI--------HSVPRRAKAESTRINLTFR 242 (246)
Q Consensus 203 ~i~L~~gsllvM~g~~q~~w~--------H~Ip~~~~~~~~RIslTFR 242 (246)
.+..-+|+++|.-|++-+.|. |.|... ....|||+-|-
T Consensus 227 ~V~P~p~a~vVNiGD~l~~lSNG~ykSv~HRV~~n--~~~~R~Sia~F 272 (322)
T KOG0143|consen 227 DVPPIPGAFVVNIGDMLQILSNGRYKSVLHRVVVN--GEKERISVAFF 272 (322)
T ss_pred ECCCCCCCEEEEcccHHhHhhCCcccceEEEEEeC--CCCceEEEEEE
Confidence 777778999999888766664 555442 23449999663
No 44
>PLN02276 gibberellin 20-oxidase
Probab=55.24 E-value=42 Score=30.77 Aligned_cols=43 Identities=21% Similarity=0.207 Sum_probs=30.0
Q ss_pred cceEEEcCCCcEEEEccCccceeeccccccC------CCCCceEEEecc
Q 025911 200 DQHSFTLKHGSMLVMRGYTQRDWIHSVPRRA------KAESTRINLTFR 242 (246)
Q Consensus 200 ~~~~i~L~~gsllvM~g~~q~~w~H~Ip~~~------~~~~~RIslTFR 242 (246)
..+.++..+|+++|--|++-+.|..+.-+.. .....|+|+.|-
T Consensus 252 ~Wi~V~p~pgalVVNiGD~L~~~TNG~~kSt~HRVv~~~~~~R~Sia~F 300 (361)
T PLN02276 252 KWRSVRPRPGALVVNIGDTFMALSNGRYKSCLHRAVVNSERERRSLAFF 300 (361)
T ss_pred EEEEcCCCCCeEEEEcHHHHHHHhCCccccccceeecCCCCCEEEEEEE
Confidence 3577888999999999997777644332211 135779999874
No 45
>KOG1591 consensus Prolyl 4-hydroxylase alpha subunit [Amino acid transport and metabolism]
Probab=52.70 E-value=1.2e+02 Score=27.15 Aligned_cols=19 Identities=11% Similarity=0.296 Sum_probs=17.1
Q ss_pred eeEEeCCCCCHHHHHHHHH
Q 025911 38 EVIYFPRIIKMEDSWKFFD 56 (246)
Q Consensus 38 ~~~~~~~fl~~~ea~~L~~ 56 (246)
.+.+++|||+++|.+.|..
T Consensus 98 ~~~~yhd~ls~~e~d~l~~ 116 (289)
T KOG1591|consen 98 RVVLYHDFLSDEECDHLIS 116 (289)
T ss_pred ceEeehhcCCHHHHHHHHH
Confidence 5999999999999988876
No 46
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=49.56 E-value=36 Score=27.86 Aligned_cols=42 Identities=10% Similarity=0.079 Sum_probs=32.7
Q ss_pred EEEEEcCCceeeEEeeCCCCCCCCCCCCCchhhhhhhccCCCcceEEEcCCCcEEEEccCcccee
Q 025911 158 IASVSFGCERDFLLKIKPSKSYQDRRTDDEPVSKRLKKKGNLDQHSFTLKHGSMLVMRGYTQRDW 222 (246)
Q Consensus 158 IaslSLG~~r~f~fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~gsllvM~g~~q~~w 222 (246)
-+.+-|-++.-|.++.+.. ..+.|.++.|||++++.+...++
T Consensus 95 eiR~il~GtgYfDVrd~dd-----------------------~WIRi~vekGDlivlPaGiyHRF 136 (179)
T KOG2107|consen 95 EIRYILEGTGYFDVRDKDD-----------------------QWIRIFVEKGDLIVLPAGIYHRF 136 (179)
T ss_pred heEEEeecceEEeeccCCC-----------------------CEEEEEEecCCEEEecCcceeee
Confidence 3455677889999986543 46899999999999999876554
No 47
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase
Probab=49.35 E-value=37 Score=30.57 Aligned_cols=43 Identities=9% Similarity=0.061 Sum_probs=30.0
Q ss_pred cceEEEcCCCcEEEEccCccceeeccccccC------CCCCceEEEecc
Q 025911 200 DQHSFTLKHGSMLVMRGYTQRDWIHSVPRRA------KAESTRINLTFR 242 (246)
Q Consensus 200 ~~~~i~L~~gsllvM~g~~q~~w~H~Ip~~~------~~~~~RIslTFR 242 (246)
..+.++..+|+++|.-|++-+.|..+.-+.. .....|+|+.|-
T Consensus 205 ~Wi~V~p~pg~lvVNiGD~l~~~Tng~~kS~~HRVv~~~~~~R~Si~~F 253 (321)
T PLN02299 205 EWVDVPPMRHSIVVNLGDQLEVITNGKYKSVMHRVVAQTDGNRMSIASF 253 (321)
T ss_pred eEEECCCCCCeEEEEeCHHHHHHhCCceecccceeecCCCCCEEEEEEE
Confidence 3567888889999999998877764332211 134579999874
No 48
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=48.81 E-value=56 Score=29.96 Aligned_cols=41 Identities=12% Similarity=0.077 Sum_probs=29.9
Q ss_pred cceEEEcCCCcEEEEccCccceee--------ccccccCCCCCceEEEecc
Q 025911 200 DQHSFTLKHGSMLVMRGYTQRDWI--------HSVPRRAKAESTRINLTFR 242 (246)
Q Consensus 200 ~~~~i~L~~gsllvM~g~~q~~w~--------H~Ip~~~~~~~~RIslTFR 242 (246)
..+.++..+|.++|.-|++-+.|. |.|... ....|+||.|-
T Consensus 259 ~Wi~V~p~pgalVVNiGD~L~~~SNG~~kS~~HRVv~~--~~~~R~Sia~F 307 (361)
T PLN02758 259 TWVPVHPVPNALVINIGDTLEVLTNGKYKSVEHRAVTN--KEKDRLSIVTF 307 (361)
T ss_pred EEEeCCCCCCeEEEEccchhhhhcCCeeecccceeecC--CCCCEEEEEEE
Confidence 356788889999999999887774 555321 35679999864
No 49
>PLN03178 leucoanthocyanidin dioxygenase; Provisional
Probab=46.62 E-value=51 Score=30.15 Aligned_cols=41 Identities=20% Similarity=0.036 Sum_probs=28.9
Q ss_pred cceEEEcCCCcEEEEccCccceee--------ccccccCCCCCceEEEecc
Q 025911 200 DQHSFTLKHGSMLVMRGYTQRDWI--------HSVPRRAKAESTRINLTFR 242 (246)
Q Consensus 200 ~~~~i~L~~gsllvM~g~~q~~w~--------H~Ip~~~~~~~~RIslTFR 242 (246)
..+.++..+|+++|--|++-+.|. |.|... ....|+||.|-
T Consensus 257 ~Wi~V~p~pg~lvVNiGD~L~~~TNG~~kSt~HRVv~~--~~~~R~Si~~F 305 (360)
T PLN03178 257 KWVTAKCVPDSIVVHIGDTLEILSNGRYKSILHRGLVN--KEKVRISWAVF 305 (360)
T ss_pred EEEEcCCCCCeEEEEccHHHHHHhCCccccccceeecC--CCCCeEEEEEE
Confidence 357788889999999888666654 554321 34569999874
No 50
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=45.94 E-value=1.1e+02 Score=28.28 Aligned_cols=113 Identities=17% Similarity=0.131 Sum_probs=63.5
Q ss_pred chHHHHHHHHHhhcCCCCCceeeeeeecCCCCCccccccCCCccCCCCeEEEEEcCCceeeEEeeCCCCCCCCCCCCCch
Q 025911 109 PPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKSYQDRRTDDEP 188 (246)
Q Consensus 109 P~L~~il~~~~~~~~~~~~n~~lvN~Y~~g~~~I~~H~D~~~~~g~~~~IaslSLG~~r~f~fr~~~~~~~~~~~~~~~~ 188 (246)
|.+..+++.. .-++.++.+-+.|-+=.+|. ++|+|-|.-. |..|-.-+.|.-.+.........-+..+.-.
T Consensus 101 p~v~~l~~~F-rflP~wr~ddiMIS~a~~GG-gvg~H~D~YD-------VfliQg~G~RRW~v~~~~~~~~~~~~~d~~~ 171 (383)
T COG2850 101 PEVAALMEPF-RFLPDWRIDDIMISFAAPGG-GVGPHFDQYD-------VFLIQGQGRRRWRVGKKCNMSTLCPHPDLLI 171 (383)
T ss_pred HHHHHHHHHh-ccCccccccceEEEEecCCC-ccCccccchh-------eeEEeecccceeecCCcccccCcCCCcchhh
Confidence 4566665543 12445677888887557888 9999999743 5556666667777654311110001000000
Q ss_pred hhhhhhccCCCcceEEEcCCCcEEEEccCccceeeccccccCCCCCceEEEecc
Q 025911 189 VSKRLKKKGNLDQHSFTLKHGSMLVMRGYTQRDWIHSVPRRAKAESTRINLTFR 242 (246)
Q Consensus 189 ~~~~~~~~~~~~~~~i~L~~gsllvM~g~~q~~w~H~Ip~~~~~~~~RIslTFR 242 (246)
-..........|++||+|.++... |-|+|+- ..---.|+-||
T Consensus 172 ------~~~f~~~~d~vlepGDiLYiPp~~---~H~gvae---~dc~tySvG~r 213 (383)
T COG2850 172 ------LAPFEPDIDEVLEPGDILYIPPGF---PHYGVAE---DDCMTYSVGFR 213 (383)
T ss_pred ------cCCCCchhhhhcCCCceeecCCCC---CcCCccc---ccccceeeecc
Confidence 000112355789999999988763 3456665 33444555555
No 51
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=44.58 E-value=44 Score=27.03 Aligned_cols=40 Identities=10% Similarity=0.032 Sum_probs=27.1
Q ss_pred EEcCCceeeEEeeCCCCCCCCCCCCCchhhhhhhccCCCcceEEEcCCCcEEEEccCccceee
Q 025911 161 VSFGCERDFLLKIKPSKSYQDRRTDDEPVSKRLKKKGNLDQHSFTLKHGSMLVMRGYTQRDWI 223 (246)
Q Consensus 161 lSLG~~r~f~fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~gsllvM~g~~q~~w~ 223 (246)
+-+.++..|.++...+ ..+.|.++.|||++++.+..+.+.
T Consensus 97 ~i~~G~g~Fdvr~~~~-----------------------~wiri~~e~GDli~vP~g~~HrF~ 136 (157)
T PF03079_consen 97 YIVDGSGYFDVRDGDD-----------------------VWIRILCEKGDLIVVPAGTYHRFT 136 (157)
T ss_dssp EEEECEEEEEEE-TTC-----------------------EEEEEEEETTCEEEE-TT--EEEE
T ss_pred EEeCcEEEEEEEcCCC-----------------------EEEEEEEcCCCEEecCCCCceeEE
Confidence 4467779999985322 346799999999999988775553
No 52
>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1.14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.
Probab=42.89 E-value=66 Score=25.86 Aligned_cols=81 Identities=14% Similarity=0.125 Sum_probs=45.8
Q ss_pred CCCceeeeeeecCCCCCccccccCCCccCCCCeEEEEEc-CCceeeEEeeCCCCCCCCCCCCCchhhhhhhccCCCcceE
Q 025911 125 SRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSF-GCERDFLLKIKPSKSYQDRRTDDEPVSKRLKKKGNLDQHS 203 (246)
Q Consensus 125 ~~~n~~lvN~Y~~g~~~I~~H~D~~~~~g~~~~IaslSL-G~~r~f~fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (246)
..+-.|.+..-.+|. .|.+|.|..... -..-..|.. ...+.|.+. + ..
T Consensus 77 ~~~~~~~~s~l~pg~-~I~pH~d~~~~~--lR~Hl~L~~p~~~~~~~v~----~------------------------~~ 125 (163)
T PF05118_consen 77 CPLGRVRFSRLPPGT-HIKPHRDPTNLR--LRLHLPLIVPNPGCYIRVG----G------------------------ET 125 (163)
T ss_dssp TTCEEEEEEEEECTE-EEEEE-SS-TTE--EEEEEEEC--STTEEEEET----T------------------------EE
T ss_pred cchhhEEEEEECCCC-EECCeeCCCCcc--eEEEEEEEcCCCCeEEEEC----C------------------------eE
Confidence 345667888889999 999999975432 001112222 133444331 1 34
Q ss_pred EEcCCCcEEEEccCccceeeccccccCCCCCceEEEecc
Q 025911 204 FTLKHGSMLVMRGYTQRDWIHSVPRRAKAESTRINLTFR 242 (246)
Q Consensus 204 i~L~~gsllvM~g~~q~~w~H~Ip~~~~~~~~RIslTFR 242 (246)
...+.|.++++... +.|.+-.. ....||.|.+-
T Consensus 126 ~~w~~G~~~~fD~s----~~H~~~N~--~~~~Rv~L~vD 158 (163)
T PF05118_consen 126 RHWREGECWVFDDS----FEHEVWNN--GDEDRVVLIVD 158 (163)
T ss_dssp EB--CTEEEEE-TT----S-EEEEES--SSS-EEEEEEE
T ss_pred EEeccCcEEEEeCC----EEEEEEeC--CCCCEEEEEEE
Confidence 77899999999776 45666653 57899999764
No 53
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=39.06 E-value=1.2e+02 Score=26.15 Aligned_cols=66 Identities=20% Similarity=0.311 Sum_probs=41.8
Q ss_pred CCCCCceeeeee----ecCCCCCccccccCCCccCCCCeEEEEEcCCceeeEEeeCCCCCCCCCCCCCchhhhhhhccCC
Q 025911 123 PGSRFNSLLLNR----YKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKSYQDRRTDDEPVSKRLKKKGN 198 (246)
Q Consensus 123 ~~~~~n~~lvN~----Y~~g~~~I~~H~D~~~~~g~~~~IaslSLG~~r~f~fr~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (246)
+|..||..++.. +.+| .+++|.|.... ....+..+.+.+...+... +
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~--~~d~~~~r~~~--~~~~~i~~~~~G~~~~~~~---~---------------------- 66 (290)
T PRK10572 16 PGYSFNAHLVAGLTPIEAGG--YLDFFIDRPLG--MKGYILNLTIRGQGVIFNG---G---------------------- 66 (290)
T ss_pred CCCCcceeeeecccccccCC--ccceeeecCCC--ccceEEEEEEeccEEEecC---C----------------------
Confidence 366777765543 3443 47778886554 3446777777776665431 1
Q ss_pred CcceEEEcCCCcEEEEccCccc
Q 025911 199 LDQHSFTLKHGSMLVMRGYTQR 220 (246)
Q Consensus 199 ~~~~~i~L~~gsllvM~g~~q~ 220 (246)
..+.+++|+++++....-+
T Consensus 67 ---~~~~~~~g~~i~i~p~~~h 85 (290)
T PRK10572 67 ---RAFVCRPGDLLLFPPGEIH 85 (290)
T ss_pred ---eeEecCCCCEEEECCCCce
Confidence 2478888998888877644
No 54
>PF12088 DUF3565: Protein of unknown function (DUF3565); InterPro: IPR021948 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 30 to 78 amino acids in length. This protein has two conserved sequence motifs: WVA and CGH.
Probab=38.87 E-value=23 Score=23.90 Aligned_cols=23 Identities=35% Similarity=0.690 Sum_probs=18.4
Q ss_pred ccccccCCCccCCCCeEEEEEcCCceee
Q 025911 142 VGWHADDEKLYGSTPEIASVSFGCERDF 169 (246)
Q Consensus 142 I~~H~D~~~~~g~~~~IaslSLG~~r~f 169 (246)
||+|.|++..| ||-|+-|-..-+
T Consensus 1 vg~h~Dee~hW-----VA~L~CGH~QHv 23 (61)
T PF12088_consen 1 VGFHQDEEGHW-----VAELSCGHTQHV 23 (61)
T ss_pred CCccccccCCE-----EEEecccccccc
Confidence 68999998764 999999986543
No 55
>KOG3706 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.34 E-value=63 Score=31.04 Aligned_cols=78 Identities=19% Similarity=0.203 Sum_probs=46.0
Q ss_pred eeeeee--cCCCCCccccccCCCccCCCCeEEEEEcCCceeeEEeeCCCCCCC-CCCCCCchhhhhhhccCCCcceEEEc
Q 025911 130 LLLNRY--KGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKSYQ-DRRTDDEPVSKRLKKKGNLDQHSFTL 206 (246)
Q Consensus 130 ~lvN~Y--~~g~~~I~~H~D~~~~~g~~~~IaslSLG~~r~f~fr~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~L 206 (246)
+-.|.| ++|+++..+|-|+...| .|-+-+.-..++.+....... ...+++.=.+.+. ...++...|
T Consensus 317 vGaNvYLTPagSqGfaPHyDdIeaF-------vlQvEGrK~Wrly~P~~~~eel~l~sS~Nf~eedl----gePV~e~vl 385 (629)
T KOG3706|consen 317 VGANVYLTPAGSQGFAPHYDDIEAF-------VLQVEGRKHWRLYHPTVPLEELALVSSDNFTEEDL----GEPVHEFVL 385 (629)
T ss_pred cccceeecCCCCCCCCCchhhhhhh-------hheeccceeeEeecCCCcHhhhhhccCCCCChhHh----CCchHHhhc
Confidence 567888 68888999999997643 355666555555542221110 0111111011111 135678999
Q ss_pred CCCcEEEEccCc
Q 025911 207 KHGSMLVMRGYT 218 (246)
Q Consensus 207 ~~gsllvM~g~~ 218 (246)
++|||+.++-++
T Consensus 386 e~GDllYfPRG~ 397 (629)
T KOG3706|consen 386 EPGDLLYFPRGT 397 (629)
T ss_pred CCCcEEEecCcc
Confidence 999999998764
No 56
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=31.49 E-value=54 Score=27.36 Aligned_cols=98 Identities=20% Similarity=0.290 Sum_probs=48.6
Q ss_pred eeeee--cCCCCCccccccCCCccCCCCeEEEEEcCCceeeEEeeCCCCCC-CCC------C---CC-CchhhhhhhccC
Q 025911 131 LLNRY--KGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKSY-QDR------R---TD-DEPVSKRLKKKG 197 (246)
Q Consensus 131 lvN~Y--~~g~~~I~~H~D~~~~~g~~~~IaslSLG~~r~f~fr~~~~~~~-~~~------~---~~-~~~~~~~~~~~~ 197 (246)
-.|.+ ..|+ ...+|.|... .+..+--|..+...|-+...... ... . -+ .++...+.....
T Consensus 132 ~~~l~ig~~gs-~t~lH~D~~~------n~~~~i~G~K~~~L~pP~~~~~l~~~~~~~~~~~~~~~d~~~~d~~~~p~~~ 204 (251)
T PF13621_consen 132 SSNLWIGPPGS-FTPLHYDPSH------NLLAQIRGRKRWILFPPDDSPNLYPRPDSHGGTVFSWVDPDNPDLERFPKFR 204 (251)
T ss_dssp EEEEEEE-TTE-EEEEEE-SSE------EEEEEEESEEEEEEE-GGGGGGCTBETTTST-TCBBSS-TTS--TTT-CGGG
T ss_pred ccEEEEeCCCc-eeeeeECchh------hhhhccCCCEEEEEECCccccccccceecccccceeeeeccChhhhhhhhhc
Confidence 34444 3455 8999999822 46666677766666644322110 000 0 00 011111111111
Q ss_pred CCcceEEEcCCCcEEEEccCccceeeccccccCCC--CCceEEEecc
Q 025911 198 NLDQHSFTLKHGSMLVMRGYTQRDWIHSVPRRAKA--ESTRINLTFR 242 (246)
Q Consensus 198 ~~~~~~i~L~~gsllvM~g~~q~~w~H~Ip~~~~~--~~~RIslTFR 242 (246)
....+.+.|.+||+|.++.. |-|.|.. . ..--||++|-
T Consensus 205 ~~~~~~~~l~pGD~LfiP~g----WwH~V~~---~~~~~~sisvn~w 244 (251)
T PF13621_consen 205 KAPPYEVVLEPGDVLFIPPG----WWHQVEN---LSDDDLSISVNYW 244 (251)
T ss_dssp G--EEEEEEETT-EEEE-TT-----EEEEEE---STTSSCEEEEEEE
T ss_pred cCceeEEEECCCeEEEECCC----CeEEEEE---cCCCCeEEEEEEE
Confidence 12568899999999999765 8899987 4 2336777664
No 57
>KOG2731 consensus DNA alkylation damage repair protein [RNA processing and modification]
Probab=28.05 E-value=21 Score=32.70 Aligned_cols=47 Identities=26% Similarity=0.318 Sum_probs=37.3
Q ss_pred CCceeeeeeecCCCCCccccccCCCccCC---CCeEEEEEcCCceeeEEeeC
Q 025911 126 RFNSLLLNRYKGGNDYVGWHADDEKLYGS---TPEIASVSFGCERDFLLKIK 174 (246)
Q Consensus 126 ~~n~~lvN~Y~~g~~~I~~H~D~~~~~g~---~~~IaslSLG~~r~f~fr~~ 174 (246)
-++.|++|.|..-. +++.|.|...++.. +=+|.+||.|. +.|.+...
T Consensus 313 lp~i~~~~f~~~~g-~~~~~Q~~~ey~ks~r~nl~Irqv~~~d-~~f~~~~~ 362 (378)
T KOG2731|consen 313 LPDICIVNFYSETG-SLGLHQDKAEYLKSSRVNLPIRQVSIGD-AEFLYGDQ 362 (378)
T ss_pred CcccccccccCCCc-ccccchhHHHHHHhhhcCceeEEeccCc-cccccCch
Confidence 57999999998776 79999998766432 23799999999 99987653
No 58
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=26.69 E-value=2.6e+02 Score=21.04 Aligned_cols=59 Identities=17% Similarity=0.228 Sum_probs=39.4
Q ss_pred CCceeeee-eecCCCCCccccccCCCccCCCCeEEEEEcCCceeeEEeeCCCCCCCCCCCCCchhhhhhhccCCCcceEE
Q 025911 126 RFNSLLLN-RYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKSYQDRRTDDEPVSKRLKKKGNLDQHSF 204 (246)
Q Consensus 126 ~~n~~lvN-~Y~~g~~~I~~H~D~~~~~g~~~~IaslSLG~~r~f~fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 204 (246)
..+...++ .+.+|+ .+.||.=... .+..+-|.+...+.+. + -..
T Consensus 40 ~~~~~~~~v~~~~G~-~~~~H~hp~~------~~~~~Vl~G~~~~~~~---g-------------------------~~~ 84 (131)
T COG1917 40 GENLSVVLVTFEPGA-VIPWHTHPLG------EQTIYVLEGEGTVQLE---G-------------------------EKK 84 (131)
T ss_pred CceEEEEEEEECCCc-ccccccCCCc------ceEEEEEecEEEEEec---C-------------------------Cce
Confidence 34544333 578999 9999987622 2555667776777665 1 126
Q ss_pred EcCCCcEEEEccCcc
Q 025911 205 TLKHGSMLVMRGYTQ 219 (246)
Q Consensus 205 ~L~~gsllvM~g~~q 219 (246)
.|..||.+++.....
T Consensus 85 ~l~~Gd~i~ip~g~~ 99 (131)
T COG1917 85 ELKAGDVIIIPPGVV 99 (131)
T ss_pred EecCCCEEEECCCCe
Confidence 789999998877754
No 59
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=26.53 E-value=2.8e+02 Score=22.52 Aligned_cols=60 Identities=7% Similarity=0.090 Sum_probs=37.5
Q ss_pred eeeee-cCCCCCccccccCCCccCCCCeEEEEEcCCceeeEEeeCCCCCCCCCCCCCchhhhhhhccCCCcceEEEcCCC
Q 025911 131 LLNRY-KGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKSYQDRRTDDEPVSKRLKKKGNLDQHSFTLKHG 209 (246)
Q Consensus 131 lvN~Y-~~g~~~I~~H~D~~~~~g~~~~IaslSLG~~r~f~fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~g 209 (246)
.|-.+ .+++ ...||.+... -.-+.|-+...+.++... ....+.|..|
T Consensus 30 ~v~~vgGpn~-R~d~H~~~td-------E~FyqleG~~~l~v~d~g------------------------~~~~v~L~eG 77 (159)
T TIGR03037 30 MVTVVGGPNA-RTDFHDDPGE-------EFFYQLKGEMYLKVTEEG------------------------KREDVPIREG 77 (159)
T ss_pred EEEEeCCCCC-CcccccCCCc-------eEEEEEcceEEEEEEcCC------------------------cEEEEEECCC
Confidence 33345 4555 7889986522 223445555666665321 1235999999
Q ss_pred cEEEEccCcccee
Q 025911 210 SMLVMRGYTQRDW 222 (246)
Q Consensus 210 sllvM~g~~q~~w 222 (246)
|++++++...+.+
T Consensus 78 d~flvP~gvpHsP 90 (159)
T TIGR03037 78 DIFLLPPHVPHSP 90 (159)
T ss_pred CEEEeCCCCCccc
Confidence 9999999987665
No 60
>PLN02403 aminocyclopropanecarboxylate oxidase
Probab=25.28 E-value=1.9e+02 Score=25.88 Aligned_cols=40 Identities=13% Similarity=0.161 Sum_probs=24.7
Q ss_pred ceEEEcCC-CcEEEEccCcccee--------eccccccCCCCCceEEEecc
Q 025911 201 QHSFTLKH-GSMLVMRGYTQRDW--------IHSVPRRAKAESTRINLTFR 242 (246)
Q Consensus 201 ~~~i~L~~-gsllvM~g~~q~~w--------~H~Ip~~~~~~~~RIslTFR 242 (246)
.+.++..+ ++++|--|++-+.| .|.|... ....|+|+.|-
T Consensus 201 Wi~V~p~p~~~lvVNvGD~L~~~Tng~~~S~~HRVv~~--~~~~R~Si~~F 249 (303)
T PLN02403 201 WVPIPPSKNNTIFVNTGDQLEVLSNGRYKSTLHRVMAD--KNGSRLSIATF 249 (303)
T ss_pred EEECCCCCCCEEEEEehHHHHHHhCCeeecccceeecC--CCCCEEEEEEE
Confidence 34455555 47777778766555 3555321 35679999874
No 61
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=23.20 E-value=1.3e+02 Score=19.50 Aligned_cols=54 Identities=11% Similarity=0.041 Sum_probs=35.0
Q ss_pred eecCCCCCccccccCCCccCCCCeEEEEEcCCceeeEEeeCCCCCCCCCCCCCchhhhhhhccCCCcceEEEcCCCcEEE
Q 025911 134 RYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKSYQDRRTDDEPVSKRLKKKGNLDQHSFTLKHGSMLV 213 (246)
Q Consensus 134 ~Y~~g~~~I~~H~D~~~~~g~~~~IaslSLG~~r~f~fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~gsllv 213 (246)
.+.+|. .+++|...... -..+-+.++..+.+. + ..+.|+.|+.+.
T Consensus 4 ~~~pG~-~~~~h~H~~~~------e~~~vl~G~~~~~~~---~-------------------------~~~~l~~Gd~~~ 48 (71)
T PF07883_consen 4 TLPPGG-SIPPHRHPGED------EFFYVLSGEGTLTVD---G-------------------------ERVELKPGDAIY 48 (71)
T ss_dssp EEETTE-EEEEEEESSEE------EEEEEEESEEEEEET---T-------------------------EEEEEETTEEEE
T ss_pred EECCCC-CCCCEECCCCC------EEEEEEECCEEEEEc---c-------------------------EEeEccCCEEEE
Confidence 567888 89999965331 333445555555431 1 258899999999
Q ss_pred EccCcccee
Q 025911 214 MRGYTQRDW 222 (246)
Q Consensus 214 M~g~~q~~w 222 (246)
+...+.+.+
T Consensus 49 i~~~~~H~~ 57 (71)
T PF07883_consen 49 IPPGVPHQV 57 (71)
T ss_dssp EETTSEEEE
T ss_pred ECCCCeEEE
Confidence 988865443
No 62
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=22.78 E-value=4.4e+02 Score=21.78 Aligned_cols=59 Identities=7% Similarity=0.071 Sum_probs=37.7
Q ss_pred eeee-cCCCCCccccccCCCccCCCCeEEEEEcCCceeeEEeeCCCCCCCCCCCCCchhhhhhhccCCCcceEEEcCCCc
Q 025911 132 LNRY-KGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKSYQDRRTDDEPVSKRLKKKGNLDQHSFTLKHGS 210 (246)
Q Consensus 132 vN~Y-~~g~~~I~~H~D~~~~~g~~~~IaslSLG~~r~f~fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~gs 210 (246)
|-.+ -+|+ ..+||.+... =.-+.|-+...+.++.. + ....+.|..||
T Consensus 37 VmvvgGpn~-r~d~H~~~td-------E~FyqleG~~~l~v~d~-g-----------------------~~~~v~L~eGd 84 (177)
T PRK13264 37 VMVVGGPNA-RTDFHYDPGE-------EFFYQLEGDMYLKVQED-G-----------------------KRRDVPIREGE 84 (177)
T ss_pred EEEEccCCc-ccccccCCCc-------eEEEEECCeEEEEEEcC-C-----------------------ceeeEEECCCC
Confidence 3345 4555 7999986532 22344555566666531 1 12359999999
Q ss_pred EEEEccCcccee
Q 025911 211 MLVMRGYTQRDW 222 (246)
Q Consensus 211 llvM~g~~q~~w 222 (246)
++++.+...+.+
T Consensus 85 ~fllP~gvpHsP 96 (177)
T PRK13264 85 MFLLPPHVPHSP 96 (177)
T ss_pred EEEeCCCCCcCC
Confidence 999999887664
No 63
>COG3751 EGL-9 Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=20.44 E-value=3.8e+02 Score=23.49 Aligned_cols=98 Identities=14% Similarity=0.166 Sum_probs=52.8
Q ss_pred eeeeeecCCCCCccccccCCCccCCCCeEEEEEcCCceeeEEeeCCCCCCCCCCCCCchhhhhhhccCCCcceEEEcCCC
Q 025911 130 LLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKSYQDRRTDDEPVSKRLKKKGNLDQHSFTLKHG 209 (246)
Q Consensus 130 ~lvN~Y~~g~~~I~~H~D~~~~~g~~~~IaslSLG~~r~f~fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~g 209 (246)
+-++.|.+|+ .+..|.|.... .+.-.++.-++-.+.- ++..+++.. .-.+..++ ... ......|.-.-|
T Consensus 138 ~~~~~y~~G~-~l~~H~D~~~~--~~~R~~~yv~y~~r~w--kpe~GGeL~-l~~s~~~~---~~~--~~~~~ti~P~fn 206 (252)
T COG3751 138 GQITVYNPGC-FLLKHDDNGRD--KDIRLATYVYYLTREW--KPEYGGELR-LFHSLQKN---NTA--ADSFKTIAPVFN 206 (252)
T ss_pred eeeeEecCCc-eeEeecccCCC--ccceEEEEEeccCCCC--CcCCCCcee-eccccccc---ccc--cccccccCCCCc
Confidence 5788999999 99999998754 2223444444333221 111111100 00011000 000 123355888889
Q ss_pred cEEEEccCccceeeccccccCCCCCceEEEe
Q 025911 210 SMLVMRGYTQRDWIHSVPRRAKAESTRINLT 240 (246)
Q Consensus 210 sllvM~g~~q~~w~H~Ip~~~~~~~~RIslT 240 (246)
+|++|.-..-+. -|.|... .....|+|||
T Consensus 207 ~lv~F~s~~~Hs-~h~V~~~-~~~~~RlsV~ 235 (252)
T COG3751 207 SLVFFKSRPSHS-VHSVEEP-YAAADRLSVT 235 (252)
T ss_pred eEEEEEecCCcc-ceecccc-ccccceEEEe
Confidence 999997765444 3555542 2678999997
Done!