BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025912
         (246 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q03427|LAMC_DROME Lamin-C OS=Drosophila melanogaster GN=LamC PE=1 SV=2
          Length = 621

 Score = 34.7 bits (78), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 72/156 (46%), Gaps = 26/156 (16%)

Query: 29  PPLSTRALPPQHSPSLHHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRH 88
           P   TR    Q    L HL DR+A     +++L  +N RL        QEL+LA+  +  
Sbjct: 35  PTSPTRTSRQQEKEELQHLNDRLACYIDRMRNLENENSRLT-------QELNLAQDTVNR 87

Query: 89  LSSVAASVKAERDAEVRELYEKSLKLDAELRV-IESMHAELDRVRADIEKLCVIKQEMIK 147
            +S   +V  +  A  R+L +++ K  A+L + I+ +  E D ++  ++K    K+  + 
Sbjct: 88  ETSNLKAVYEKELAAARKLLDETAKEKAKLEIDIKRLWEENDDLKPRLDKKT--KEATVA 145

Query: 148 D---------LNEING-------DLAKARDESKDMA 167
           +          NE+NG       D  K  D++K++A
Sbjct: 146 ENNARLYENRYNEVNGKYNQSLADRKKFEDQAKELA 181


>sp|P21910|LAML2_XENLA Lamin-L(II) OS=Xenopus laevis PE=2 SV=1
          Length = 623

 Score = 33.5 bits (75), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 73/141 (51%), Gaps = 21/141 (14%)

Query: 30  PLS-TRALPPQHSPSLHHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRH 88
           PLS TR    Q    L HL DR+A+    +++L  +N RL    ++ K+E++      R 
Sbjct: 24  PLSPTRISRLQEKEELRHLNDRLAVYIDRVRALELENDRLMV-KISEKEEVT-----TRE 77

Query: 89  LSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKD 148
           +S +    ++E  A+ R++ +++ +  A L++      EL + R+D++       E+ K+
Sbjct: 78  VSGIKNLYESEL-ADARKVLDETARERARLQI------ELGKFRSDLD-------ELNKN 123

Query: 149 LNEINGDLAKARDESKDMAAI 169
             + + DL+ A+   KD+ A+
Sbjct: 124 YKKKDADLSTAQGRIKDLEAL 144


>sp|P05661|MYSA_DROME Myosin heavy chain, muscle OS=Drosophila melanogaster GN=Mhc PE=1
            SV=4
          Length = 1962

 Score = 33.1 bits (74), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 55/104 (52%), Gaps = 10/104 (9%)

Query: 44   LHHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKA----- 98
            + +L D IA Q   I  L ++ +    T+    +EL  AE ++ HL+ V A ++      
Sbjct: 974  IRNLNDEIAHQDELINKLNKEKKMQGETNQKTGEELQAAEDKINHLNKVKAKLEQTLDEL 1033

Query: 99   ----ERDAEVRELYEKSL-KLDAELRVIESMHAELDRVRADIEK 137
                ER+ +VR   EKS  K++ +L++ +   A+L+R + ++E+
Sbjct: 1034 EDSLEREKKVRGDVEKSKRKVEGDLKLTQEAVADLERNKKELEQ 1077


>sp|A7E2Y1|MYH7B_HUMAN Myosin-7B OS=Homo sapiens GN=MYH7B PE=2 SV=3
          Length = 1941

 Score = 32.3 bits (72), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 60/115 (52%), Gaps = 5/115 (4%)

Query: 119  RVIESMHAELD-RVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETER 177
            R +ES+ A LD   RA  E L  +K++M  DLN++   L  A  ++ +  A    ++ + 
Sbjct: 1599 RAVESLQASLDAETRARNEAL-RLKKKMEGDLNDLELQLGHATRQATEAQAATRLMQAQL 1657

Query: 178  QEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANAEKRARAA 232
            +E   GR   + E++  A  HEQ + +E+    +A ++E L+A L   E+  R A
Sbjct: 1658 KEEQAGR---DEEQRLAAELHEQAQALERRASLLAAELEELRAALEQGERSRRLA 1709


>sp|P14732|LMNB2_CHICK Lamin-B2 OS=Gallus gallus GN=LMNB2 PE=2 SV=1
          Length = 600

 Score = 31.2 bits (69), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 78/175 (44%), Gaps = 24/175 (13%)

Query: 20  MSGRRVLREP---PLS-TRALPPQHSPSLHHLEDRIAIQHSDIQSLLQDNQRLAATHVAL 75
           MSG  +   P   PLS TR    Q    L  L DR+A+    +++L  +N RL    ++ 
Sbjct: 1   MSGTPIRGTPGGTPLSPTRISRLQEKEELRQLNDRLAVYIDRVRALELENDRLL-VKISE 59

Query: 76  KQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADI 135
           K+E++      R +S +            + LYE  L  DA  RV++    E  R++ +I
Sbjct: 60  KEEVTT-----REVSGI------------KNLYESELA-DAR-RVLDETAKERARLQIEI 100

Query: 136 EKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECE 190
            KL    +E  K   + + DL+ A+   KD+  +    E E   +   + ++E E
Sbjct: 101 GKLRAELEEFNKSYKKKDADLSVAQGRIKDLEVLFHRSEAELNTVLNEKRSLEAE 155


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.314    0.126    0.331 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,370,542
Number of Sequences: 539616
Number of extensions: 2876153
Number of successful extensions: 20161
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 1515
Number of HSP's that attempted gapping in prelim test: 17043
Number of HSP's gapped (non-prelim): 3934
length of query: 246
length of database: 191,569,459
effective HSP length: 114
effective length of query: 132
effective length of database: 130,053,235
effective search space: 17167027020
effective search space used: 17167027020
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)