Query 025912
Match_columns 246
No_of_seqs 88 out of 90
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 10:58:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025912.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025912hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02169 SMC_prok_A chromosom 97.8 0.017 3.7E-07 59.3 25.4 80 18-97 642-722 (1164)
2 TIGR02169 SMC_prok_A chromosom 97.7 0.019 4.2E-07 58.9 24.4 48 47-94 292-339 (1164)
3 TIGR02168 SMC_prok_B chromosom 97.6 0.029 6.4E-07 57.1 24.2 12 46-57 702-713 (1179)
4 TIGR02168 SMC_prok_B chromosom 97.6 0.053 1.1E-06 55.3 24.8 24 46-69 688-711 (1179)
5 PF00038 Filament: Intermediat 97.4 0.047 1E-06 49.2 20.3 115 47-161 9-138 (312)
6 PF08317 Spc7: Spc7 kinetochor 97.4 0.022 4.7E-07 53.0 18.1 133 46-178 153-290 (325)
7 PRK09039 hypothetical protein; 97.1 0.044 9.6E-07 51.7 17.6 147 73-222 42-199 (343)
8 PRK11637 AmiB activator; Provi 97.1 0.26 5.7E-06 47.1 24.9 76 136-211 173-248 (428)
9 PRK11637 AmiB activator; Provi 97.1 0.27 6E-06 46.9 24.9 85 136-223 162-250 (428)
10 PF07888 CALCOCO1: Calcium bin 97.0 0.26 5.7E-06 50.0 22.8 167 46-225 140-316 (546)
11 PRK02224 chromosome segregatio 97.0 0.34 7.3E-06 49.7 24.0 78 73-154 209-286 (880)
12 PF00038 Filament: Intermediat 96.9 0.28 6.1E-06 44.2 20.1 130 61-196 6-149 (312)
13 PF05701 WEMBL: Weak chloropla 96.9 0.35 7.6E-06 48.0 22.0 68 121-188 283-361 (522)
14 KOG0933 Structural maintenance 96.8 0.28 6.1E-06 53.0 21.9 218 2-229 620-866 (1174)
15 PRK03918 chromosome segregatio 96.8 0.59 1.3E-05 47.7 23.4 80 105-184 217-296 (880)
16 PF08317 Spc7: Spc7 kinetochor 96.8 0.12 2.7E-06 48.0 16.9 175 55-229 77-267 (325)
17 COG1196 Smc Chromosome segrega 96.7 0.79 1.7E-05 49.4 24.8 66 14-79 635-704 (1163)
18 TIGR00606 rad50 rad50. This fa 96.6 0.44 9.6E-06 51.8 21.7 173 52-228 715-910 (1311)
19 COG1196 Smc Chromosome segrega 96.6 1 2.2E-05 48.6 24.1 62 167-228 859-920 (1163)
20 PF06818 Fez1: Fez1; InterPro 96.4 0.35 7.5E-06 43.6 16.8 119 100-221 50-199 (202)
21 TIGR00606 rad50 rad50. This fa 96.4 1.1 2.3E-05 49.0 23.1 54 178-233 1054-1107(1311)
22 PF07798 DUF1640: Protein of u 96.3 0.59 1.3E-05 40.0 17.3 122 58-182 28-156 (177)
23 PF07888 CALCOCO1: Calcium bin 96.2 1.5 3.3E-05 44.6 21.6 76 46-121 147-232 (546)
24 KOG0161 Myosin class II heavy 96.2 1.1 2.5E-05 51.2 22.6 141 50-190 1387-1527(1930)
25 PRK02224 chromosome segregatio 96.0 1.5 3.2E-05 45.1 21.1 20 70-89 213-232 (880)
26 PF05701 WEMBL: Weak chloropla 96.0 0.81 1.8E-05 45.5 18.3 21 201-221 409-429 (522)
27 PF10174 Cast: RIM-binding pro 96.0 2.1 4.5E-05 45.3 22.0 91 50-141 54-164 (775)
28 TIGR01000 bacteriocin_acc bact 95.9 1.2 2.7E-05 42.8 18.8 42 148-189 220-261 (457)
29 PF12325 TMF_TATA_bd: TATA ele 95.9 0.087 1.9E-06 43.6 9.5 74 112-188 19-92 (120)
30 smart00787 Spc7 Spc7 kinetocho 95.8 1.4 3E-05 41.6 18.3 133 46-178 148-285 (312)
31 TIGR03007 pepcterm_ChnLen poly 95.8 0.83 1.8E-05 43.9 16.9 56 133-188 317-372 (498)
32 PRK03918 chromosome segregatio 95.7 3 6.5E-05 42.6 23.5 21 204-224 396-416 (880)
33 PRK04863 mukB cell division pr 95.6 2.1 4.5E-05 48.1 21.4 163 70-233 935-1121(1486)
34 PF04156 IncA: IncA protein; 95.5 1.1 2.4E-05 37.9 15.1 113 66-178 77-189 (191)
35 KOG0995 Centromere-associated 95.4 1.4 3E-05 45.2 17.5 122 101-226 241-366 (581)
36 PF09726 Macoilin: Transmembra 95.2 1.4 3E-05 45.9 17.4 20 212-231 551-570 (697)
37 PF09789 DUF2353: Uncharacteri 94.9 1.9 4.1E-05 41.2 16.1 106 60-165 76-187 (319)
38 COG1579 Zn-ribbon protein, pos 94.8 2.6 5.6E-05 38.8 16.2 130 57-190 11-150 (239)
39 PRK04778 septation ring format 94.8 2.1 4.5E-05 42.9 16.9 162 67-228 246-419 (569)
40 KOG0250 DNA repair protein RAD 94.8 4.2 9E-05 44.5 19.9 147 16-163 623-799 (1074)
41 PRK09841 cryptic autophosphory 94.6 1.1 2.4E-05 45.9 14.8 120 65-187 262-386 (726)
42 KOG0161 Myosin class II heavy 94.6 11 0.00023 43.8 23.4 49 47-95 969-1017(1930)
43 PF06160 EzrA: Septation ring 94.6 3.4 7.3E-05 41.5 17.7 178 46-225 219-405 (560)
44 PF15619 Lebercilin: Ciliary p 94.5 3.2 7E-05 36.7 19.0 112 46-161 16-139 (194)
45 PHA02562 46 endonuclease subun 94.4 5.3 0.00011 38.7 20.6 23 166-188 301-323 (562)
46 COG4372 Uncharacterized protei 94.3 6.4 0.00014 39.3 23.2 154 56-220 109-280 (499)
47 smart00787 Spc7 Spc7 kinetocho 94.2 1.1 2.4E-05 42.2 12.6 174 54-227 71-260 (312)
48 PF04111 APG6: Autophagy prote 94.1 0.92 2E-05 42.5 12.0 96 122-220 39-134 (314)
49 PHA02562 46 endonuclease subun 94.1 6.1 0.00013 38.2 21.3 54 134-187 300-353 (562)
50 TIGR02680 conserved hypothetic 93.9 13 0.00028 41.4 22.6 32 46-77 746-777 (1353)
51 KOG0977 Nuclear envelope prote 93.9 8.8 0.00019 39.3 23.0 56 166-221 171-230 (546)
52 PF09787 Golgin_A5: Golgin sub 93.8 7.6 0.00016 38.5 19.8 149 64-224 215-380 (511)
53 KOG0977 Nuclear envelope prote 93.8 5.9 0.00013 40.5 17.7 78 84-165 141-222 (546)
54 PF13514 AAA_27: AAA domain 93.7 12 0.00026 40.4 24.7 136 53-188 157-327 (1111)
55 PF08614 ATG16: Autophagy prot 93.6 0.69 1.5E-05 40.0 9.5 93 44-140 69-165 (194)
56 TIGR01843 type_I_hlyD type I s 93.5 6 0.00013 36.3 20.1 21 47-67 79-99 (423)
57 PF10174 Cast: RIM-binding pro 93.5 12 0.00026 39.7 22.7 179 44-223 289-489 (775)
58 PF06818 Fez1: Fez1; InterPro 93.4 2.2 4.9E-05 38.5 12.6 76 147-224 66-149 (202)
59 KOG4674 Uncharacterized conser 93.2 5.2 0.00011 45.9 17.6 168 50-228 1161-1329(1822)
60 PF09726 Macoilin: Transmembra 92.9 14 0.00029 38.8 23.0 180 45-224 421-654 (697)
61 PF07111 HCR: Alpha helical co 92.9 5.5 0.00012 42.0 16.0 135 50-190 67-216 (739)
62 COG1340 Uncharacterized archae 92.8 4.7 0.0001 38.3 14.4 101 105-205 134-241 (294)
63 TIGR01005 eps_transp_fam exopo 92.6 13 0.00029 37.9 18.6 25 66-90 197-221 (754)
64 PF14197 Cep57_CLD_2: Centroso 92.6 1.7 3.8E-05 32.7 9.2 67 113-185 2-68 (69)
65 PF04849 HAP1_N: HAP1 N-termin 92.6 10 0.00022 36.3 17.0 39 56-94 82-121 (306)
66 KOG0612 Rho-associated, coiled 92.5 18 0.00038 40.5 19.9 185 41-225 433-649 (1317)
67 TIGR01843 type_I_hlyD type I s 92.4 8.7 0.00019 35.3 19.0 33 67-99 141-173 (423)
68 PF15070 GOLGA2L5: Putative go 92.4 13 0.00029 38.3 18.1 149 73-221 18-193 (617)
69 PF12718 Tropomyosin_1: Tropom 92.4 5.9 0.00013 33.3 16.5 128 74-201 4-134 (143)
70 KOG1853 LIS1-interacting prote 92.4 10 0.00022 36.1 19.1 134 64-207 14-149 (333)
71 PF10146 zf-C4H2: Zinc finger- 92.3 4.4 9.5E-05 36.9 13.1 55 122-179 49-103 (230)
72 KOG4674 Uncharacterized conser 92.2 27 0.00058 40.6 21.3 179 46-228 693-887 (1822)
73 PF12325 TMF_TATA_bd: TATA ele 92.2 3.6 7.9E-05 34.1 11.4 70 119-188 16-85 (120)
74 PRK09039 hypothetical protein; 92.2 11 0.00023 35.9 16.5 16 46-61 43-58 (343)
75 COG4942 Membrane-bound metallo 92.1 14 0.00029 36.9 24.1 44 177-223 205-248 (420)
76 PF09755 DUF2046: Uncharacteri 92.0 12 0.00026 35.9 23.2 72 39-117 17-92 (310)
77 KOG0976 Rho/Rac1-interacting s 91.9 10 0.00022 41.2 16.6 96 50-145 327-436 (1265)
78 TIGR03017 EpsF chain length de 91.6 12 0.00027 35.3 16.8 44 144-187 315-358 (444)
79 PF10186 Atg14: UV radiation r 91.6 6.9 0.00015 34.4 13.3 52 134-188 57-108 (302)
80 KOG0996 Structural maintenance 91.6 27 0.00058 39.1 22.1 175 57-244 430-620 (1293)
81 PF12128 DUF3584: Protein of u 91.4 25 0.00055 38.5 23.1 33 47-79 357-389 (1201)
82 TIGR01010 BexC_CtrB_KpsE polys 91.2 13 0.00027 34.7 15.6 30 71-100 171-200 (362)
83 KOG4809 Rab6 GTPase-interactin 91.1 6.6 0.00014 40.6 14.0 119 55-177 330-458 (654)
84 KOG2129 Uncharacterized conser 91.0 19 0.00042 36.4 17.2 119 98-222 154-305 (552)
85 KOG0250 DNA repair protein RAD 90.8 30 0.00065 38.2 20.6 56 122-180 375-431 (1074)
86 PRK11546 zraP zinc resistance 90.7 0.83 1.8E-05 39.1 6.4 52 137-188 62-113 (143)
87 PF05622 HOOK: HOOK protein; 90.7 0.074 1.6E-06 54.2 0.0 157 68-224 237-416 (713)
88 PRK11519 tyrosine kinase; Prov 90.3 13 0.00029 38.2 15.7 109 70-185 267-384 (719)
89 PF08647 BRE1: BRE1 E3 ubiquit 90.2 7.7 0.00017 30.5 11.2 80 131-217 15-94 (96)
90 PF08826 DMPK_coil: DMPK coile 90.0 2.2 4.9E-05 31.7 7.3 42 113-154 5-46 (61)
91 KOG0933 Structural maintenance 89.8 33 0.00071 38.0 18.4 143 47-192 799-958 (1174)
92 PF12128 DUF3584: Protein of u 89.5 36 0.00079 37.3 23.2 56 165-223 817-872 (1201)
93 PRK10884 SH3 domain-containing 89.4 6 0.00013 35.4 11.0 21 110-133 94-114 (206)
94 PF15294 Leu_zip: Leucine zipp 89.2 7.4 0.00016 36.7 11.8 119 100-228 84-244 (278)
95 PF11932 DUF3450: Protein of u 88.9 8 0.00017 34.6 11.5 55 122-176 52-106 (251)
96 PF05557 MAD: Mitotic checkpoi 88.9 0.12 2.7E-06 52.6 0.0 53 164-225 257-310 (722)
97 KOG0249 LAR-interacting protei 88.9 17 0.00037 38.9 15.2 83 41-133 90-184 (916)
98 PF15070 GOLGA2L5: Putative go 88.8 22 0.00049 36.7 15.9 124 89-223 2-139 (617)
99 KOG3478 Prefoldin subunit 6, K 88.7 7.9 0.00017 32.5 10.4 94 124-227 10-111 (120)
100 KOG1029 Endocytic adaptor prot 88.6 36 0.00079 37.0 17.4 80 70-156 437-516 (1118)
101 KOG1937 Uncharacterized conser 88.6 30 0.00066 35.2 18.0 19 198-216 344-362 (521)
102 PF13851 GAS: Growth-arrest sp 88.6 17 0.00036 32.2 18.7 135 72-223 29-167 (201)
103 PLN03229 acetyl-coenzyme A car 88.5 35 0.00076 36.4 17.2 82 144-225 646-731 (762)
104 KOG4673 Transcription factor T 88.4 1.7 3.8E-05 45.9 7.7 59 126-184 866-924 (961)
105 PF05667 DUF812: Protein of un 88.0 8.3 0.00018 39.6 12.2 94 132-225 327-427 (594)
106 KOG0982 Centrosomal protein Nu 87.9 33 0.00071 34.8 16.6 108 46-153 219-345 (502)
107 PF10473 CENP-F_leu_zip: Leuci 87.4 17 0.00037 31.0 17.8 37 58-94 12-48 (140)
108 COG1579 Zn-ribbon protein, pos 87.0 25 0.00054 32.5 19.1 52 47-98 22-73 (239)
109 PF10498 IFT57: Intra-flagella 86.4 30 0.00064 33.5 14.4 99 105-228 251-350 (359)
110 PF05557 MAD: Mitotic checkpoi 86.3 0.22 4.7E-06 50.8 0.0 118 110-227 289-427 (722)
111 PF12592 DUF3763: Protein of u 86.2 4.7 0.0001 29.6 6.9 55 166-220 2-56 (57)
112 PRK04863 mukB cell division pr 86.2 68 0.0015 36.6 24.1 26 201-226 451-476 (1486)
113 PF07926 TPR_MLP1_2: TPR/MLP1/ 86.2 17 0.00037 29.7 15.8 37 58-94 5-41 (132)
114 COG2433 Uncharacterized conser 86.1 14 0.0003 38.6 12.6 91 126-226 415-508 (652)
115 PF14197 Cep57_CLD_2: Centroso 86.0 8.5 0.00018 29.0 8.4 46 66-111 1-46 (69)
116 TIGR03007 pepcterm_ChnLen poly 85.8 35 0.00075 32.9 17.4 25 158-182 269-293 (498)
117 PF13514 AAA_27: AAA domain 85.5 58 0.0013 35.3 24.4 121 104-228 728-869 (1111)
118 PF07794 DUF1633: Protein of u 85.2 15 0.00033 38.0 12.2 116 105-229 593-721 (790)
119 KOG4603 TBP-1 interacting prot 85.1 29 0.00063 31.4 12.7 96 126-222 79-178 (201)
120 PF10234 Cluap1: Clusterin-ass 84.9 33 0.00072 32.2 13.5 68 120-187 170-241 (267)
121 COG3206 GumC Uncharacterized p 84.6 21 0.00046 34.4 12.6 48 142-189 344-391 (458)
122 PF07106 TBPIP: Tat binding pr 84.5 23 0.0005 29.8 11.5 62 123-185 76-137 (169)
123 PRK10246 exonuclease subunit S 84.3 66 0.0014 34.9 24.0 50 47-96 528-577 (1047)
124 TIGR02680 conserved hypothetic 84.3 76 0.0016 35.6 24.5 17 78-94 801-817 (1353)
125 PF07889 DUF1664: Protein of u 84.2 9.4 0.0002 32.0 8.8 65 120-187 44-112 (126)
126 KOG0980 Actin-binding protein 84.2 70 0.0015 35.0 21.1 72 144-215 470-545 (980)
127 PF10186 Atg14: UV radiation r 84.1 29 0.00062 30.5 15.3 18 50-67 21-38 (302)
128 PF08912 Rho_Binding: Rho Bind 84.0 4.5 9.8E-05 31.1 6.2 45 131-175 1-45 (69)
129 KOG0964 Structural maintenance 84.0 40 0.00086 37.4 15.1 141 102-246 230-385 (1200)
130 COG4942 Membrane-bound metallo 83.9 49 0.0011 33.1 23.7 36 191-226 209-244 (420)
131 COG0419 SbcC ATPase involved i 83.9 63 0.0014 34.2 22.5 75 147-225 274-348 (908)
132 TIGR01005 eps_transp_fam exopo 83.3 58 0.0013 33.4 19.4 33 69-101 193-225 (754)
133 PF14817 HAUS5: HAUS augmin-li 83.3 52 0.0011 34.3 15.3 107 122-228 307-439 (632)
134 PF09787 Golgin_A5: Golgin sub 83.1 52 0.0011 32.7 22.4 22 166-187 276-297 (511)
135 PRK15178 Vi polysaccharide exp 83.0 47 0.001 33.2 14.3 58 159-228 309-366 (434)
136 KOG0612 Rho-associated, coiled 82.9 90 0.0019 35.3 20.1 12 49-60 475-486 (1317)
137 PF07798 DUF1640: Protein of u 82.7 30 0.00064 29.6 14.2 15 211-225 136-150 (177)
138 PF06120 Phage_HK97_TLTM: Tail 82.7 27 0.00058 33.3 12.1 69 123-191 38-109 (301)
139 PF05837 CENP-H: Centromere pr 82.6 16 0.00035 29.2 9.2 65 120-188 11-75 (106)
140 KOG0971 Microtubule-associated 82.6 50 0.0011 36.5 15.1 123 102-224 231-357 (1243)
141 TIGR00634 recN DNA repair prot 82.5 56 0.0012 32.7 15.2 69 115-183 297-365 (563)
142 PF04156 IncA: IncA protein; 82.5 29 0.00062 29.3 14.8 46 46-91 85-130 (191)
143 TIGR03017 EpsF chain length de 82.3 46 0.00099 31.5 20.3 33 68-100 169-201 (444)
144 PF11559 ADIP: Afadin- and alp 82.2 27 0.00058 28.8 11.8 23 170-192 114-136 (151)
145 PF10481 CENP-F_N: Cenp-F N-te 82.1 41 0.00089 32.3 12.9 77 112-191 53-129 (307)
146 PRK01156 chromosome segregatio 82.0 70 0.0015 33.4 22.5 10 77-86 197-206 (895)
147 PF07106 TBPIP: Tat binding pr 81.8 19 0.00041 30.3 9.8 61 127-188 73-133 (169)
148 PF08614 ATG16: Autophagy prot 81.8 15 0.00032 31.8 9.4 58 99-156 92-153 (194)
149 TIGR02971 heterocyst_DevB ABC 81.7 40 0.00087 30.5 16.1 62 71-136 91-152 (327)
150 PF11221 Med21: Subunit 21 of 81.7 11 0.00023 31.5 8.2 66 68-140 67-132 (144)
151 PF07926 TPR_MLP1_2: TPR/MLP1/ 81.1 29 0.00062 28.4 14.2 33 155-187 50-82 (132)
152 PF02050 FliJ: Flagellar FliJ 80.9 20 0.00044 26.5 9.2 82 122-203 8-91 (123)
153 PF06008 Laminin_I: Laminin Do 80.7 42 0.00092 30.1 17.9 147 42-204 17-168 (264)
154 KOG1962 B-cell receptor-associ 80.6 32 0.00069 31.5 11.4 46 148-193 166-215 (216)
155 PF13805 Pil1: Eisosome compon 80.5 16 0.00034 34.4 9.6 90 99-197 121-210 (271)
156 PF02403 Seryl_tRNA_N: Seryl-t 80.4 22 0.00048 27.6 9.1 42 113-154 23-64 (108)
157 PF09730 BicD: Microtubule-ass 80.3 64 0.0014 34.3 14.9 117 42-168 352-472 (717)
158 TIGR02231 conserved hypothetic 80.2 23 0.0005 34.8 11.2 38 123-160 135-172 (525)
159 TIGR03794 NHPM_micro_HlyD NHPM 80.0 56 0.0012 31.1 17.4 22 47-68 94-115 (421)
160 PF13851 GAS: Growth-arrest sp 80.0 42 0.00092 29.7 19.1 146 92-243 17-178 (201)
161 KOG2391 Vacuolar sorting prote 79.9 6.2 0.00013 38.5 6.9 87 124-212 207-294 (365)
162 PLN03229 acetyl-coenzyme A car 79.7 44 0.00095 35.7 13.4 75 145-224 509-589 (762)
163 PF02050 FliJ: Flagellar FliJ 79.7 23 0.00049 26.3 12.1 95 75-171 3-97 (123)
164 PF10473 CENP-F_leu_zip: Leuci 79.7 38 0.00082 28.9 14.5 14 107-120 22-35 (140)
165 PF06810 Phage_GP20: Phage min 79.6 12 0.00027 31.9 8.0 63 125-187 12-74 (155)
166 PF14735 HAUS4: HAUS augmin-li 79.6 51 0.0011 30.3 15.9 134 55-188 84-226 (238)
167 TIGR03752 conj_TIGR03752 integ 79.5 22 0.00047 36.0 10.8 42 44-85 61-102 (472)
168 PF03962 Mnd1: Mnd1 family; I 79.3 11 0.00025 32.9 7.9 37 164-200 103-139 (188)
169 PF14662 CCDC155: Coiled-coil 79.1 49 0.0011 29.9 21.1 40 58-97 10-49 (193)
170 PF09728 Taxilin: Myosin-like 78.6 28 0.00061 32.7 10.8 70 122-191 25-94 (309)
171 PF05622 HOOK: HOOK protein; 78.5 0.66 1.4E-05 47.4 0.0 62 104-165 341-402 (713)
172 TIGR02473 flagell_FliJ flagell 78.3 32 0.00069 27.2 10.2 85 122-206 16-110 (141)
173 KOG0999 Microtubule-associated 78.2 96 0.0021 32.7 15.7 141 78-222 58-252 (772)
174 TIGR01000 bacteriocin_acc bact 78.2 68 0.0015 31.0 18.0 22 205-226 290-311 (457)
175 KOG1853 LIS1-interacting prote 78.1 67 0.0014 30.8 16.2 123 46-182 45-182 (333)
176 PF12329 TMF_DNA_bd: TATA elem 78.0 28 0.0006 26.4 8.9 20 97-116 7-26 (74)
177 cd07651 F-BAR_PombeCdc15_like 77.8 49 0.0011 29.2 18.3 141 58-214 62-211 (236)
178 PF04880 NUDE_C: NUDE protein, 77.7 1.7 3.7E-05 38.0 2.3 35 45-84 17-51 (166)
179 PF15619 Lebercilin: Ciliary p 77.6 51 0.0011 29.2 15.9 97 109-205 50-152 (194)
180 KOG0994 Extracellular matrix g 77.5 1.4E+02 0.003 34.3 16.6 43 74-116 1461-1506(1758)
181 COG5185 HEC1 Protein involved 77.1 86 0.0019 32.4 14.1 145 74-226 253-402 (622)
182 PF10168 Nup88: Nuclear pore c 77.0 1E+02 0.0022 32.5 18.6 75 150-227 635-713 (717)
183 COG0419 SbcC ATPase involved i 76.4 1.1E+02 0.0024 32.5 23.1 165 66-231 270-442 (908)
184 PRK10361 DNA recombination pro 76.4 92 0.002 31.6 20.7 95 135-232 101-207 (475)
185 PF04350 PilO: Pilus assembly 76.2 4.6 9.9E-05 32.1 4.2 47 144-190 3-49 (144)
186 PF09304 Cortex-I_coil: Cortex 76.2 36 0.00078 28.2 9.4 53 125-180 22-74 (107)
187 PF14662 CCDC155: Coiled-coil 76.2 60 0.0013 29.4 18.3 41 47-87 20-60 (193)
188 PF04728 LPP: Lipoprotein leuc 75.5 20 0.00043 26.6 7.0 23 136-158 6-28 (56)
189 KOG2629 Peroxisomal membrane a 75.4 23 0.0005 33.9 9.2 76 113-188 119-199 (300)
190 PF05667 DUF812: Protein of un 75.3 1.1E+02 0.0023 31.8 19.2 44 46-89 318-361 (594)
191 PRK06569 F0F1 ATP synthase sub 74.3 58 0.0013 28.3 14.2 118 42-177 34-152 (155)
192 PF13747 DUF4164: Domain of un 74.2 40 0.00087 26.4 9.4 68 86-156 10-83 (89)
193 KOG2264 Exostosin EXT1L [Signa 74.0 12 0.00026 39.3 7.4 50 128-187 88-137 (907)
194 PF11180 DUF2968: Protein of u 73.3 72 0.0016 28.9 12.1 84 76-161 95-182 (192)
195 smart00806 AIP3 Actin interact 73.3 1.1E+02 0.0023 30.9 14.9 118 76-193 154-279 (426)
196 PF05911 DUF869: Plant protein 73.2 1E+02 0.0022 33.0 14.2 108 106-216 593-718 (769)
197 PF10146 zf-C4H2: Zinc finger- 72.6 76 0.0017 29.0 11.6 61 126-186 32-103 (230)
198 PF05082 Rop-like: Rop-like; 72.5 40 0.00088 25.7 8.3 59 126-187 2-60 (66)
199 PF05483 SCP-1: Synaptonemal c 72.1 1.5E+02 0.0032 31.9 21.3 157 60-225 531-687 (786)
200 PRK04778 septation ring format 72.0 1.2E+02 0.0025 30.7 24.1 104 122-226 379-503 (569)
201 TIGR00414 serS seryl-tRNA synt 71.9 37 0.0008 33.1 10.0 32 121-152 32-63 (418)
202 PF08172 CASP_C: CASP C termin 71.3 45 0.00098 30.7 9.9 46 166-225 81-126 (248)
203 PRK11020 hypothetical protein; 71.2 21 0.00046 30.0 7.1 56 123-190 2-57 (118)
204 PF05911 DUF869: Plant protein 70.9 1.5E+02 0.0034 31.7 16.8 67 92-161 60-134 (769)
205 cd00890 Prefoldin Prefoldin is 70.7 48 0.0011 25.8 9.7 44 143-186 2-45 (129)
206 COG2433 Uncharacterized conser 70.4 60 0.0013 34.1 11.5 58 163-221 473-531 (652)
207 TIGR03185 DNA_S_dndD DNA sulfu 70.1 1.3E+02 0.0029 30.6 16.0 90 88-183 377-468 (650)
208 PF04728 LPP: Lipoprotein leuc 69.8 22 0.00048 26.3 6.1 25 132-156 9-33 (56)
209 KOG0982 Centrosomal protein Nu 69.7 47 0.001 33.7 10.2 18 121-138 376-393 (502)
210 PRK03947 prefoldin subunit alp 69.6 59 0.0013 26.4 10.0 25 199-223 108-132 (140)
211 KOG3433 Protein involved in me 69.1 18 0.0004 32.8 6.7 58 168-225 85-142 (203)
212 cd07627 BAR_Vps5p The Bin/Amph 68.3 83 0.0018 27.6 15.4 113 76-188 34-167 (216)
213 PF06785 UPF0242: Uncharacteri 68.0 1.3E+02 0.0029 29.8 14.7 95 58-160 77-175 (401)
214 KOG4403 Cell surface glycoprot 67.7 26 0.00056 35.7 8.0 19 210-229 307-325 (575)
215 PF05010 TACC: Transforming ac 67.4 52 0.0011 29.7 9.3 65 82-149 141-205 (207)
216 PF02403 Seryl_tRNA_N: Seryl-t 67.0 57 0.0012 25.2 9.9 30 121-150 69-98 (108)
217 PRK05431 seryl-tRNA synthetase 67.0 47 0.001 32.4 9.6 35 118-152 27-61 (425)
218 KOG0979 Structural maintenance 66.4 2.2E+02 0.0048 31.8 20.8 171 50-227 175-360 (1072)
219 PF03962 Mnd1: Mnd1 family; I 65.8 93 0.002 27.3 10.7 49 140-188 103-152 (188)
220 PF08429 PLU-1: PLU-1-like pro 65.8 1.1E+02 0.0024 28.1 12.0 142 102-246 183-334 (335)
221 PRK12704 phosphodiesterase; Pr 65.6 1.6E+02 0.0034 29.8 13.2 24 207-232 170-193 (520)
222 PF05529 Bap31: B-cell recepto 65.6 57 0.0012 27.9 8.9 35 143-180 157-191 (192)
223 PF13094 CENP-Q: CENP-Q, a CEN 65.1 81 0.0018 26.3 10.1 33 143-175 122-154 (160)
224 KOG1937 Uncharacterized conser 65.0 1.7E+02 0.0037 30.0 18.9 69 150-221 448-517 (521)
225 PRK03598 putative efflux pump 64.8 1.1E+02 0.0024 27.9 12.2 19 170-188 144-162 (331)
226 PF13935 Ead_Ea22: Ead/Ea22-li 64.4 69 0.0015 26.6 8.9 43 44-86 69-113 (139)
227 PF04111 APG6: Autophagy prote 64.2 1.3E+02 0.0028 28.4 12.8 76 75-153 14-91 (314)
228 TIGR02231 conserved hypothetic 64.2 49 0.0011 32.6 9.2 47 166-226 126-172 (525)
229 PF02183 HALZ: Homeobox associ 64.0 30 0.00066 24.1 5.6 36 121-156 7-42 (45)
230 PRK10246 exonuclease subunit S 63.8 2.3E+02 0.0049 30.9 22.1 45 138-182 834-878 (1047)
231 COG1842 PspA Phage shock prote 63.4 1.2E+02 0.0026 27.6 16.1 72 46-117 28-100 (225)
232 PF05700 BCAS2: Breast carcino 63.3 1.1E+02 0.0024 27.2 14.5 42 62-103 135-176 (221)
233 PF14932 HAUS-augmin3: HAUS au 63.3 1.1E+02 0.0024 27.8 10.7 67 107-173 101-169 (256)
234 PF11559 ADIP: Afadin- and alp 62.7 86 0.0019 25.8 15.6 42 125-166 86-127 (151)
235 PF08826 DMPK_coil: DMPK coile 62.4 62 0.0014 24.1 8.1 54 131-185 6-60 (61)
236 KOG0980 Actin-binding protein 62.4 2.5E+02 0.0054 31.0 20.4 71 113-183 488-562 (980)
237 PF06156 DUF972: Protein of un 62.4 63 0.0014 26.3 8.1 13 105-117 4-16 (107)
238 PF05008 V-SNARE: Vesicle tran 61.9 18 0.00039 26.5 4.5 43 122-164 35-78 (79)
239 PF10168 Nup88: Nuclear pore c 61.7 2.2E+02 0.0048 30.1 14.5 66 81-155 533-601 (717)
240 PRK01156 chromosome segregatio 61.6 2.1E+02 0.0046 29.9 22.2 31 122-152 632-662 (895)
241 TIGR01069 mutS2 MutS2 family p 60.9 1.7E+02 0.0036 31.1 12.8 16 166-181 574-589 (771)
242 KOG4643 Uncharacterized coiled 60.2 2.9E+02 0.0064 31.1 16.6 134 44-185 179-322 (1195)
243 PF08776 VASP_tetra: VASP tetr 60.1 44 0.00095 23.4 5.8 10 173-182 28-37 (40)
244 PRK10476 multidrug resistance 60.1 1.4E+02 0.0031 27.4 14.2 6 47-52 84-89 (346)
245 PF05266 DUF724: Protein of un 60.1 1.2E+02 0.0027 26.8 11.4 97 127-233 87-186 (190)
246 KOG0288 WD40 repeat protein Ti 59.8 2E+02 0.0043 29.2 12.4 49 104-155 43-91 (459)
247 PF05266 DUF724: Protein of un 59.2 1.3E+02 0.0028 26.7 10.8 43 137-182 142-184 (190)
248 PF05791 Bacillus_HBL: Bacillu 59.0 69 0.0015 27.7 8.3 69 104-181 112-180 (184)
249 PF04880 NUDE_C: NUDE protein, 58.4 11 0.00023 33.1 3.2 44 99-145 4-47 (166)
250 KOG0018 Structural maintenance 57.6 3.2E+02 0.007 30.8 17.1 153 66-221 156-346 (1141)
251 TIGR03752 conj_TIGR03752 integ 57.6 59 0.0013 33.0 8.5 94 57-156 46-139 (472)
252 KOG0996 Structural maintenance 57.6 3.4E+02 0.0073 31.0 22.2 57 165-221 522-578 (1293)
253 PF11932 DUF3450: Protein of u 57.2 1.4E+02 0.0031 26.6 15.9 43 121-163 79-122 (251)
254 PF14362 DUF4407: Domain of un 57.0 1.5E+02 0.0034 26.9 18.3 36 171-206 218-253 (301)
255 PF12004 DUF3498: Domain of un 57.0 3.5 7.7E-05 41.5 0.0 28 93-120 424-451 (495)
256 smart00338 BRLZ basic region l 56.9 70 0.0015 22.9 6.8 39 122-160 22-60 (65)
257 KOG0964 Structural maintenance 56.6 3.4E+02 0.0073 30.6 21.4 141 16-156 640-822 (1200)
258 PRK11578 macrolide transporter 56.5 1.6E+02 0.0035 27.3 10.8 60 124-183 97-156 (370)
259 PF09731 Mitofilin: Mitochondr 56.3 2.2E+02 0.0047 28.4 18.5 125 75-201 249-383 (582)
260 PF03915 AIP3: Actin interacti 56.0 94 0.002 30.9 9.6 119 76-194 150-276 (424)
261 PF10805 DUF2730: Protein of u 55.9 86 0.0019 25.0 7.8 51 107-158 47-97 (106)
262 PF06005 DUF904: Protein of un 55.6 90 0.0019 23.8 7.4 42 45-86 7-55 (72)
263 KOG4807 F-actin binding protei 55.6 2.5E+02 0.0053 28.8 16.0 40 109-148 439-478 (593)
264 PF15463 ECM11: Extracellular 55.5 80 0.0017 26.2 7.8 49 131-179 85-134 (139)
265 TIGR03794 NHPM_micro_HlyD NHPM 55.4 1.9E+02 0.0042 27.5 17.1 28 64-91 90-117 (421)
266 PF00170 bZIP_1: bZIP transcri 55.1 75 0.0016 22.7 7.0 38 124-161 24-61 (64)
267 PRK07248 hypothetical protein; 54.9 91 0.002 23.6 8.3 35 121-155 3-37 (87)
268 PF09486 HrpB7: Bacterial type 54.9 1.4E+02 0.0031 25.9 16.5 91 58-161 10-100 (158)
269 PF10481 CENP-F_N: Cenp-F N-te 54.8 2.1E+02 0.0045 27.7 13.4 65 107-174 16-80 (307)
270 PF10243 MIP-T3: Microtubule-b 54.6 4.1 8.9E-05 40.5 0.0 129 69-226 390-529 (539)
271 PF01576 Myosin_tail_1: Myosin 54.5 4.1 8.9E-05 43.1 0.0 107 122-231 528-634 (859)
272 PF14966 DNA_repr_REX1B: DNA r 53.9 70 0.0015 25.5 6.9 57 95-152 40-96 (97)
273 PF07139 DUF1387: Protein of u 53.3 2.2E+02 0.0047 27.5 12.5 99 57-177 154-256 (302)
274 PRK11546 zraP zinc resistance 53.3 87 0.0019 27.0 7.8 35 53-90 47-81 (143)
275 KOG3478 Prefoldin subunit 6, K 53.2 1.4E+02 0.003 25.2 11.9 76 105-183 22-109 (120)
276 KOG2264 Exostosin EXT1L [Signa 53.0 1E+02 0.0022 32.8 9.5 68 114-184 81-148 (907)
277 PF14723 SSFA2_C: Sperm-specif 52.7 1.8E+02 0.0038 26.2 11.4 26 132-157 144-169 (179)
278 PRK10361 DNA recombination pro 52.6 2.7E+02 0.0058 28.3 16.6 44 122-165 143-190 (475)
279 PF11594 Med28: Mediator compl 52.5 1.3E+02 0.0029 24.8 9.4 70 164-242 35-104 (106)
280 PF12761 End3: Actin cytoskele 52.4 1.6E+02 0.0034 26.7 9.6 20 73-92 99-118 (195)
281 KOG3647 Predicted coiled-coil 52.3 1.7E+02 0.0036 28.4 10.1 92 70-176 105-201 (338)
282 KOG4687 Uncharacterized coiled 51.9 2.4E+02 0.0052 27.6 12.2 113 56-179 90-226 (389)
283 PF04201 TPD52: Tumour protein 51.7 1.1E+02 0.0023 27.1 8.2 47 121-170 31-92 (162)
284 TIGR03495 phage_LysB phage lys 51.4 1.5E+02 0.0033 25.2 9.6 66 46-111 23-91 (135)
285 PF08581 Tup_N: Tup N-terminal 51.4 87 0.0019 24.3 6.9 43 46-91 29-71 (79)
286 PF12718 Tropomyosin_1: Tropom 51.2 1.5E+02 0.0032 24.9 15.3 52 107-161 12-63 (143)
287 COG1340 Uncharacterized archae 50.8 2.4E+02 0.0051 27.1 20.3 97 119-222 107-209 (294)
288 PF07445 priB_priC: Primosomal 50.7 1.1E+02 0.0023 26.5 8.1 61 127-189 103-163 (173)
289 cd00632 Prefoldin_beta Prefold 50.3 1.2E+02 0.0026 23.7 9.8 25 125-149 5-29 (105)
290 PF03245 Phage_lysis: Bacterio 49.8 36 0.00078 28.0 4.8 28 206-233 42-69 (125)
291 PF01576 Myosin_tail_1: Myosin 49.6 5.5 0.00012 42.2 0.0 112 50-164 329-443 (859)
292 TIGR03319 YmdA_YtgF conserved 49.6 2.9E+02 0.0064 27.9 17.6 8 82-89 56-63 (514)
293 PF12777 MT: Microtubule-bindi 49.2 99 0.0022 29.1 8.2 92 118-209 213-311 (344)
294 PRK15396 murein lipoprotein; P 49.1 62 0.0013 25.2 5.7 13 127-139 26-38 (78)
295 PRK13169 DNA replication intia 49.1 1.1E+02 0.0025 25.1 7.6 40 105-147 4-43 (110)
296 PRK06800 fliH flagellar assemb 48.8 1E+02 0.0022 28.3 7.8 26 122-147 48-73 (228)
297 PF05465 Halo_GVPC: Halobacter 48.7 22 0.00048 23.3 2.7 23 166-188 1-23 (32)
298 COG1730 GIM5 Predicted prefold 48.4 1.8E+02 0.0038 25.0 11.0 35 66-100 9-43 (145)
299 PF05478 Prominin: Prominin; 48.2 3.6E+02 0.0078 28.5 17.0 118 50-178 188-327 (806)
300 PF04420 CHD5: CHD5-like prote 47.6 36 0.00078 29.0 4.6 34 155-188 64-97 (161)
301 TIGR02971 heterocyst_DevB ABC 47.5 2.2E+02 0.0047 25.8 15.2 57 131-187 95-151 (327)
302 smart00502 BBC B-Box C-termina 47.2 1.2E+02 0.0026 22.8 13.0 44 138-190 55-98 (127)
303 PLN02678 seryl-tRNA synthetase 46.7 1.8E+02 0.004 29.0 10.0 25 127-151 41-65 (448)
304 COG4372 Uncharacterized protei 46.4 3.4E+02 0.0073 27.7 20.4 20 205-224 202-221 (499)
305 PF10234 Cluap1: Clusterin-ass 45.9 2.6E+02 0.0057 26.3 11.9 93 70-176 162-258 (267)
306 PRK09973 putative outer membra 45.6 1.1E+02 0.0024 24.3 6.7 34 127-160 25-58 (85)
307 PHA02414 hypothetical protein 44.8 98 0.0021 25.7 6.5 73 99-178 1-78 (111)
308 PF00261 Tropomyosin: Tropomyo 44.6 2.3E+02 0.005 25.2 19.0 97 122-232 95-195 (237)
309 PF07139 DUF1387: Protein of u 44.4 3E+02 0.0065 26.6 11.8 98 46-156 175-275 (302)
310 PRK15396 murein lipoprotein; P 44.2 1E+02 0.0022 24.0 6.2 39 122-160 28-66 (78)
311 KOG4360 Uncharacterized coiled 43.9 3.6E+02 0.0077 28.3 11.6 29 59-87 222-250 (596)
312 PF01920 Prefoldin_2: Prefoldi 43.8 1.4E+02 0.003 22.4 9.1 38 144-181 2-39 (106)
313 PF04094 DUF390: Protein of un 43.8 70 0.0015 34.4 6.8 68 139-220 381-452 (828)
314 COG0497 RecN ATPase involved i 43.8 4E+02 0.0086 27.8 14.9 42 143-184 321-362 (557)
315 COG3206 GumC Uncharacterized p 43.5 3.1E+02 0.0068 26.5 17.7 53 135-190 287-343 (458)
316 COG1322 Predicted nuclease of 43.5 3.6E+02 0.0078 27.2 18.4 73 168-243 136-214 (448)
317 PF13801 Metal_resist: Heavy-m 43.3 1.3E+02 0.0029 22.2 9.4 58 53-117 45-102 (125)
318 PRK00106 hypothetical protein; 43.1 3.9E+02 0.0085 27.5 17.6 9 224-232 200-208 (535)
319 PF14916 CCDC92: Coiled-coil d 43.0 51 0.0011 24.7 4.2 35 146-180 2-37 (60)
320 PF05615 THOC7: Tho complex su 42.9 1.8E+02 0.004 23.6 9.8 65 121-188 48-112 (139)
321 KOG4673 Transcription factor T 42.9 4.9E+02 0.011 28.5 18.1 46 71-118 424-469 (961)
322 PF03961 DUF342: Protein of un 42.5 2.1E+02 0.0046 27.8 9.6 29 195-223 371-399 (451)
323 KOG1962 B-cell receptor-associ 42.5 2.8E+02 0.006 25.5 10.7 44 122-165 161-204 (216)
324 PF05103 DivIVA: DivIVA protei 42.3 16 0.00035 28.7 1.7 42 47-88 23-64 (131)
325 PF13801 Metal_resist: Heavy-m 42.2 1.4E+02 0.003 22.1 6.6 25 160-184 83-107 (125)
326 PF06156 DUF972: Protein of un 42.2 1.3E+02 0.0027 24.5 6.8 51 137-190 5-55 (107)
327 PRK12704 phosphodiesterase; Pr 41.8 3.9E+02 0.0085 27.1 17.6 45 114-158 112-156 (520)
328 PF10153 DUF2361: Uncharacteri 41.5 2E+02 0.0044 23.8 10.7 38 51-88 2-39 (114)
329 KOG4687 Uncharacterized coiled 41.5 3.5E+02 0.0076 26.5 11.8 102 57-168 38-139 (389)
330 PF03961 DUF342: Protein of un 41.5 2.6E+02 0.0056 27.2 10.0 18 75-92 339-356 (451)
331 PRK14127 cell division protein 41.1 1.2E+02 0.0027 24.9 6.6 57 55-118 36-101 (109)
332 TIGR03185 DNA_S_dndD DNA sulfu 41.0 4.1E+02 0.0089 27.1 21.7 81 134-222 392-472 (650)
333 PRK00888 ftsB cell division pr 40.9 60 0.0013 26.0 4.7 34 121-154 29-62 (105)
334 cd07648 F-BAR_FCHO The F-BAR ( 40.9 2.6E+02 0.0057 24.9 16.6 30 59-88 63-92 (261)
335 COG1382 GimC Prefoldin, chaper 40.6 2.2E+02 0.0048 23.9 8.9 73 108-183 26-110 (119)
336 PF14257 DUF4349: Domain of un 40.6 1.6E+02 0.0036 26.2 7.9 60 165-229 133-192 (262)
337 PF07439 DUF1515: Protein of u 40.6 2.2E+02 0.0048 23.9 8.5 64 73-136 11-74 (112)
338 COG4238 Murein lipoprotein [Ce 40.3 69 0.0015 25.3 4.7 28 135-162 27-54 (78)
339 KOG0249 LAR-interacting protei 40.1 5.4E+02 0.012 28.2 15.9 95 89-191 92-190 (916)
340 cd07672 F-BAR_PSTPIP2 The F-BA 40.1 2.9E+02 0.0062 25.1 11.6 97 123-223 58-164 (240)
341 PF10212 TTKRSYEDQ: Predicted 39.9 4.5E+02 0.0097 27.3 15.3 90 122-224 423-512 (518)
342 KOG3119 Basic region leucine z 39.9 1.2E+02 0.0026 28.0 7.1 52 119-187 201-252 (269)
343 PF07028 DUF1319: Protein of u 39.8 1.1E+02 0.0024 26.0 6.3 79 139-217 29-121 (126)
344 PRK00409 recombination and DNA 39.8 4.9E+02 0.011 27.7 13.5 17 166-182 579-595 (782)
345 PRK13729 conjugal transfer pil 39.8 90 0.002 31.7 6.7 32 124-155 81-112 (475)
346 PF04977 DivIC: Septum formati 39.7 84 0.0018 22.4 4.9 29 124-152 22-50 (80)
347 KOG3809 Microtubule-binding pr 39.6 3.9E+02 0.0084 27.7 10.9 176 52-230 376-577 (583)
348 cd07674 F-BAR_FCHO1 The F-BAR 39.3 2.9E+02 0.0064 24.9 16.8 32 58-89 62-93 (261)
349 PF10191 COG7: Golgi complex c 39.0 3.2E+02 0.007 28.9 10.9 17 170-186 107-123 (766)
350 TIGR00255 conserved hypothetic 38.9 3.4E+02 0.0074 25.6 10.0 21 206-226 271-291 (291)
351 PF10018 Med4: Vitamin-D-recep 38.9 2.4E+02 0.0051 24.4 8.4 35 133-167 29-63 (188)
352 PF09730 BicD: Microtubule-ass 38.4 5.3E+02 0.011 27.7 22.8 26 64-89 280-305 (717)
353 KOG1981 SOK1 kinase belonging 38.4 4.3E+02 0.0092 27.4 11.1 131 56-223 140-277 (513)
354 KOG4571 Activating transcripti 38.3 99 0.0022 29.7 6.4 47 54-100 246-292 (294)
355 KOG0289 mRNA splicing factor [ 38.2 3E+02 0.0064 28.3 9.9 122 50-202 72-206 (506)
356 PF13166 AAA_13: AAA domain 37.9 4.4E+02 0.0096 26.6 21.8 97 122-225 359-457 (712)
357 TIGR02473 flagell_FliJ flagell 37.8 2E+02 0.0043 22.6 12.5 26 76-101 19-44 (141)
358 cd00584 Prefoldin_alpha Prefol 37.6 2.1E+02 0.0045 22.7 9.6 40 138-177 4-43 (129)
359 PRK06231 F0F1 ATP synthase sub 37.5 2.9E+02 0.0063 24.4 10.3 96 109-215 79-175 (205)
360 PF02181 FH2: Formin Homology 37.4 2.7E+02 0.0059 25.8 9.1 79 165-243 275-353 (370)
361 COG1566 EmrA Multidrug resista 37.3 2.7E+02 0.0058 27.1 9.3 20 206-225 176-195 (352)
362 PF08581 Tup_N: Tup N-terminal 37.2 2E+02 0.0043 22.3 9.9 41 121-161 6-46 (79)
363 PF08898 DUF1843: Domain of un 37.2 64 0.0014 23.8 3.9 37 147-183 14-50 (53)
364 PF13870 DUF4201: Domain of un 36.9 2.6E+02 0.0056 23.6 17.3 21 208-228 147-167 (177)
365 PRK06975 bifunctional uroporph 36.8 2.5E+02 0.0055 29.0 9.6 45 74-118 343-387 (656)
366 PF10805 DUF2730: Protein of u 36.6 2.1E+02 0.0046 22.8 7.2 14 125-138 34-47 (106)
367 KOG4657 Uncharacterized conser 36.6 3.7E+02 0.008 25.3 12.1 49 46-94 19-68 (246)
368 PLN02320 seryl-tRNA synthetase 36.4 4E+02 0.0086 27.3 10.6 18 132-149 106-123 (502)
369 PRK14154 heat shock protein Gr 36.4 1.8E+02 0.004 26.4 7.5 48 41-88 51-98 (208)
370 COG4920 Predicted membrane pro 36.2 22 0.00049 33.0 1.7 34 178-212 64-104 (249)
371 KOG0962 DNA repair protein RAD 36.2 7.3E+02 0.016 28.6 16.3 126 51-182 249-374 (1294)
372 KOG0243 Kinesin-like protein [ 36.1 6.7E+02 0.015 28.2 15.8 163 41-230 368-549 (1041)
373 PF09789 DUF2353: Uncharacteri 36.1 4.1E+02 0.0089 25.7 14.4 76 105-183 75-173 (319)
374 PRK09343 prefoldin subunit bet 35.8 2.4E+02 0.0052 22.9 12.9 77 104-183 23-111 (121)
375 PRK11281 hypothetical protein; 35.7 6.8E+02 0.015 28.1 15.4 126 45-188 202-330 (1113)
376 PLN02678 seryl-tRNA synthetase 35.6 2.3E+02 0.0051 28.3 8.8 12 108-119 32-43 (448)
377 PF05529 Bap31: B-cell recepto 35.6 2.3E+02 0.005 24.2 7.8 14 93-106 95-108 (192)
378 KOG0999 Microtubule-associated 35.6 5.8E+02 0.013 27.3 16.0 121 76-203 21-146 (772)
379 PF05483 SCP-1: Synaptonemal c 35.2 6.2E+02 0.013 27.5 22.0 108 52-162 404-521 (786)
380 PF00769 ERM: Ezrin/radixin/mo 35.1 3.5E+02 0.0076 24.6 15.3 54 128-184 42-95 (246)
381 PF00170 bZIP_1: bZIP transcri 35.0 1.7E+02 0.0036 20.9 7.0 45 92-139 16-60 (64)
382 PF09969 DUF2203: Uncharacteri 34.6 1.9E+02 0.0042 23.8 6.8 66 56-121 6-76 (120)
383 TIGR01808 CM_M_hiGC-arch monof 34.5 1.3E+02 0.0029 22.5 5.4 35 121-155 2-36 (74)
384 PRK10929 putative mechanosensi 34.4 7.2E+02 0.016 28.0 17.3 151 56-228 51-202 (1109)
385 PF14282 FlxA: FlxA-like prote 34.4 1.5E+02 0.0032 23.7 6.0 21 164-184 51-71 (106)
386 KOG1510 RNA polymerase II holo 34.3 1.7E+02 0.0038 25.3 6.7 74 78-165 64-137 (139)
387 PRK15136 multidrug efflux syst 34.2 4.2E+02 0.0091 25.3 10.5 8 218-225 202-209 (390)
388 PF15035 Rootletin: Ciliary ro 34.1 3.3E+02 0.0071 24.0 17.9 116 104-225 59-178 (182)
389 PF12252 SidE: Dot/Icm substra 34.1 6.2E+02 0.013 29.1 12.1 142 78-224 1132-1309(1439)
390 COG3524 KpsE Capsule polysacch 33.9 4.8E+02 0.01 25.8 14.8 55 161-227 248-302 (372)
391 PRK10698 phage shock protein P 33.9 3.5E+02 0.0076 24.2 15.3 149 67-222 49-217 (222)
392 cd07596 BAR_SNX The Bin/Amphip 33.7 2.7E+02 0.0059 23.0 18.7 68 121-189 92-170 (218)
393 smart00338 BRLZ basic region l 33.5 1.8E+02 0.0038 20.7 5.8 32 55-86 32-63 (65)
394 PRK13922 rod shape-determining 33.5 1.8E+02 0.0039 26.1 7.1 32 145-176 74-105 (276)
395 cd07651 F-BAR_PombeCdc15_like 33.5 3.4E+02 0.0073 23.9 11.5 101 124-226 58-163 (236)
396 PF03954 Lectin_N: Hepatic lec 33.3 1.7E+02 0.0037 25.3 6.5 79 124-218 60-138 (138)
397 PF05377 FlaC_arch: Flagella a 33.3 60 0.0013 24.0 3.3 24 165-188 8-31 (55)
398 PF02841 GBP_C: Guanylate-bind 33.2 3.9E+02 0.0084 24.5 14.3 12 75-86 195-206 (297)
399 PF05103 DivIVA: DivIVA protei 33.1 25 0.00055 27.7 1.4 32 67-98 29-60 (131)
400 PF04420 CHD5: CHD5-like prote 33.1 97 0.0021 26.4 5.0 60 160-228 36-95 (161)
401 PRK13824 replication initiatio 32.6 3.7E+02 0.0081 26.4 9.6 77 104-181 148-233 (404)
402 PF02183 HALZ: Homeobox associ 32.6 85 0.0018 21.9 3.8 29 122-150 15-43 (45)
403 PRK11199 tyrA bifunctional cho 32.6 2.7E+02 0.0059 26.5 8.4 35 121-155 5-39 (374)
404 PHA01750 hypothetical protein 32.6 1.3E+02 0.0027 23.5 5.0 35 122-156 38-72 (75)
405 PRK13455 F0F1 ATP synthase sub 32.3 3.2E+02 0.0069 23.3 10.2 20 176-195 121-140 (184)
406 PRK11820 hypothetical protein; 32.3 4.3E+02 0.0094 24.8 11.1 21 206-226 268-288 (288)
407 PF13815 Dzip-like_N: Iguana/D 32.2 2E+02 0.0044 23.1 6.5 26 138-163 71-96 (118)
408 COG1344 FlgL Flagellin and rel 32.2 4.4E+02 0.0095 24.9 10.3 80 108-187 46-128 (360)
409 PF09755 DUF2046: Uncharacteri 31.9 4.8E+02 0.01 25.3 17.0 114 74-190 146-280 (310)
410 KOG0239 Kinesin (KAR3 subfamil 31.5 6.5E+02 0.014 26.6 15.3 141 61-208 173-316 (670)
411 PF10211 Ax_dynein_light: Axon 31.4 3.6E+02 0.0078 23.6 13.5 64 123-188 124-187 (189)
412 TIGR02894 DNA_bind_RsfA transc 31.4 2E+02 0.0044 25.4 6.7 24 194-217 127-150 (161)
413 PRK07720 fliJ flagellar biosyn 31.3 2.9E+02 0.0062 22.5 10.5 42 165-206 72-113 (146)
414 TIGR03689 pup_AAA proteasome A 31.2 83 0.0018 31.9 5.0 39 52-90 4-42 (512)
415 PRK06285 chorismate mutase; Pr 31.0 2.5E+02 0.0055 21.7 8.3 35 121-155 9-43 (96)
416 COG3166 PilN Tfp pilus assembl 30.8 1E+02 0.0022 27.8 5.0 38 149-186 57-94 (206)
417 PF10018 Med4: Vitamin-D-recep 30.6 3.6E+02 0.0077 23.3 8.3 39 105-149 25-63 (188)
418 PRK00888 ftsB cell division pr 30.5 1.6E+02 0.0034 23.6 5.6 34 45-78 30-63 (105)
419 KOG4403 Cell surface glycoprot 30.3 6.4E+02 0.014 26.2 11.3 33 200-238 355-387 (575)
420 TIGR01807 CM_P2 chorismate mut 30.3 1.6E+02 0.0035 21.7 5.3 34 122-155 2-35 (76)
421 PF14257 DUF4349: Domain of un 30.2 2.7E+02 0.0058 24.9 7.6 68 122-190 128-195 (262)
422 cd00890 Prefoldin Prefoldin is 30.2 1.9E+02 0.004 22.5 5.9 41 137-177 3-43 (129)
423 KOG3647 Predicted coiled-coil 30.1 5.3E+02 0.011 25.1 10.1 84 100-191 80-172 (338)
424 PF05761 5_nucleotid: 5' nucle 30.1 2E+02 0.0042 28.8 7.2 24 165-188 363-386 (448)
425 TIGR01805 CM_mono_grmpos monof 30.1 1.7E+02 0.0037 21.9 5.4 34 122-155 2-35 (81)
426 TIGR00998 8a0101 efflux pump m 30.0 4.1E+02 0.0089 23.9 15.4 11 215-225 188-198 (334)
427 PF08898 DUF1843: Domain of un 29.8 47 0.001 24.5 2.2 18 211-228 36-53 (53)
428 PF13094 CENP-Q: CENP-Q, a CEN 29.7 3.3E+02 0.0071 22.7 8.3 76 59-155 16-91 (160)
429 PF00769 ERM: Ezrin/radixin/mo 29.7 4.3E+02 0.0094 24.0 18.4 44 53-96 30-73 (246)
430 TIGR01730 RND_mfp RND family e 29.7 3.9E+02 0.0084 23.5 8.6 36 150-185 81-116 (322)
431 PRK00409 recombination and DNA 29.5 7.2E+02 0.016 26.5 14.5 20 49-68 509-528 (782)
432 PF05781 MRVI1: MRVI1 protein; 29.5 6.7E+02 0.015 26.2 12.8 60 75-145 229-288 (538)
433 COG4985 ABC-type phosphate tra 29.4 5.1E+02 0.011 24.8 10.0 86 74-182 161-246 (289)
434 PF06005 DUF904: Protein of un 29.1 2.6E+02 0.0056 21.3 9.7 23 67-89 15-37 (72)
435 PRK13169 DNA replication intia 29.1 2.7E+02 0.0058 22.9 6.8 48 139-189 7-54 (110)
436 PF14182 YgaB: YgaB-like prote 28.9 2.9E+02 0.0064 21.8 7.5 24 165-188 41-64 (79)
437 PF06103 DUF948: Bacterial pro 28.8 2.5E+02 0.0055 21.1 7.4 51 122-172 36-86 (90)
438 PRK07857 hypothetical protein; 28.8 1.5E+02 0.0032 24.3 5.2 38 118-155 27-64 (106)
439 KOG4010 Coiled-coil protein TP 28.7 1.6E+02 0.0034 27.0 5.8 83 123-208 48-168 (208)
440 COG3352 FlaC Putative archaeal 28.6 4.1E+02 0.009 23.5 10.4 84 103-188 45-132 (157)
441 PRK00106 hypothetical protein; 28.5 6.7E+02 0.015 25.9 17.4 17 176-192 182-198 (535)
442 PF15290 Syntaphilin: Golgi-lo 28.4 5.6E+02 0.012 24.9 15.2 77 83-169 88-164 (305)
443 PF06248 Zw10: Centromere/kine 28.4 6.3E+02 0.014 25.5 13.4 16 72-87 16-31 (593)
444 KOG3915 Transcription regulato 28.4 6.3E+02 0.014 26.4 10.5 54 54-121 504-560 (641)
445 PF01920 Prefoldin_2: Prefoldi 28.3 2.6E+02 0.0055 20.9 11.3 37 122-158 65-101 (106)
446 PF04799 Fzo_mitofusin: fzo-li 28.3 3.3E+02 0.0072 24.2 7.6 70 62-135 91-160 (171)
447 PF04012 PspA_IM30: PspA/IM30 28.1 3.9E+02 0.0085 23.1 21.4 107 45-154 26-133 (221)
448 PF07989 Microtub_assoc: Micro 28.1 2.2E+02 0.0048 21.7 5.8 46 46-91 25-71 (75)
449 TIGR02449 conserved hypothetic 28.1 2.7E+02 0.0058 21.1 7.2 56 58-117 9-64 (65)
450 PRK14475 F0F1 ATP synthase sub 27.9 3.7E+02 0.008 22.6 10.4 95 109-214 41-136 (167)
451 PRK11448 hsdR type I restricti 27.7 5.3E+02 0.012 28.8 10.6 12 101-112 233-244 (1123)
452 PRK14474 F0F1 ATP synthase sub 27.6 4.7E+02 0.01 23.8 10.9 85 109-198 36-121 (250)
453 PRK10476 multidrug resistance 27.6 4.9E+02 0.011 24.0 16.3 20 168-187 187-206 (346)
454 PF11598 COMP: Cartilage oligo 27.5 2.3E+02 0.0049 20.1 5.5 23 166-188 17-39 (45)
455 PF05700 BCAS2: Breast carcino 27.4 4.4E+02 0.0096 23.4 15.2 73 112-187 139-212 (221)
456 PF05615 THOC7: Tho complex su 27.4 3.4E+02 0.0073 22.0 8.6 18 100-117 14-31 (139)
457 TIGR01730 RND_mfp RND family e 27.1 4.3E+02 0.0093 23.2 8.4 15 211-225 121-135 (322)
458 PF15397 DUF4618: Domain of un 27.1 5.4E+02 0.012 24.2 15.6 118 67-187 85-230 (258)
459 PRK13453 F0F1 ATP synthase sub 26.9 3.9E+02 0.0085 22.6 10.8 84 109-197 49-133 (173)
460 PF09006 Surfac_D-trimer: Lung 26.8 84 0.0018 22.6 3.0 28 166-193 1-28 (46)
461 COG3879 Uncharacterized protei 26.5 3.2E+02 0.007 25.6 7.6 30 131-160 55-84 (247)
462 PHA03332 membrane glycoprotein 26.4 1E+03 0.022 27.3 12.7 57 83-145 911-967 (1328)
463 PF10704 DUF2508: Protein of u 26.4 2.7E+02 0.006 20.7 6.4 49 167-215 15-63 (71)
464 smart00503 SynN Syntaxin N-ter 26.3 2.9E+02 0.0063 20.9 11.6 20 166-185 91-110 (117)
465 PF13870 DUF4201: Domain of un 26.1 4E+02 0.0087 22.5 15.7 21 165-185 139-159 (177)
466 TIGR00998 8a0101 efflux pump m 26.0 4.9E+02 0.011 23.4 16.9 87 46-136 77-163 (334)
467 TIGR02894 DNA_bind_RsfA transc 25.9 4.2E+02 0.0092 23.4 7.8 56 58-114 99-154 (161)
468 PRK06665 flgK flagellar hook-a 25.7 6E+02 0.013 26.3 10.0 75 129-207 142-217 (627)
469 PF08232 Striatin: Striatin fa 25.7 2.7E+02 0.0059 23.2 6.4 52 97-151 20-71 (134)
470 KOG0240 Kinesin (SMY1 subfamil 25.6 8.2E+02 0.018 25.9 14.5 39 63-101 414-452 (607)
471 KOG4302 Microtubule-associated 25.6 3.6E+02 0.0078 28.6 8.5 57 86-144 23-86 (660)
472 COG5293 Predicted ATPase [Gene 25.5 7.9E+02 0.017 25.7 11.8 106 107-212 340-454 (591)
473 PRK12584 flagellin A; Reviewed 25.5 6.8E+02 0.015 25.4 10.2 83 109-191 49-134 (510)
474 PF04582 Reo_sigmaC: Reovirus 25.4 46 0.001 32.2 2.0 78 77-158 28-109 (326)
475 KOG4593 Mitotic checkpoint pro 25.4 8.8E+02 0.019 26.2 17.7 130 58-188 393-527 (716)
476 KOG0976 Rho/Rac1-interacting s 25.4 1E+03 0.022 26.8 17.5 42 46-87 96-137 (1265)
477 PF06419 COG6: Conserved oligo 25.3 5.2E+02 0.011 26.6 9.5 38 118-155 37-74 (618)
478 TIGR00414 serS seryl-tRNA synt 25.2 6.4E+02 0.014 24.6 9.7 31 122-152 72-102 (418)
479 KOG0243 Kinesin-like protein [ 25.0 1E+03 0.022 26.8 17.5 30 105-134 479-512 (1041)
480 KOG2077 JNK/SAPK-associated pr 24.9 5.2E+02 0.011 27.8 9.3 78 56-136 301-381 (832)
481 KOG2991 Splicing regulator [RN 24.9 4.9E+02 0.011 25.2 8.5 61 110-183 237-297 (330)
482 COG1382 GimC Prefoldin, chaper 24.8 4.2E+02 0.0091 22.3 10.4 91 122-222 9-107 (119)
483 PF13815 Dzip-like_N: Iguana/D 24.8 3.1E+02 0.0067 22.0 6.4 24 126-149 87-110 (118)
484 KOG4643 Uncharacterized coiled 24.7 1.1E+03 0.023 27.0 23.3 180 47-227 413-606 (1195)
485 PRK08026 flagellin; Validated 24.6 6E+02 0.013 26.2 9.7 81 109-189 49-132 (529)
486 PF05384 DegS: Sensor protein 24.6 4.7E+02 0.01 22.7 14.0 48 122-169 87-134 (159)
487 PF05008 V-SNARE: Vesicle tran 24.3 2.8E+02 0.0061 20.1 6.6 13 109-121 39-51 (79)
488 PF05302 DUF720: Protein of un 24.3 1.3E+02 0.0029 25.7 4.2 40 54-93 58-97 (128)
489 COG4238 Murein lipoprotein [Ce 24.0 3E+02 0.0066 21.8 5.8 42 125-166 24-65 (78)
490 PRK03598 putative efflux pump 23.9 5.6E+02 0.012 23.4 14.3 23 46-68 78-100 (331)
491 cd07652 F-BAR_Rgd1 The F-BAR ( 23.8 5.3E+02 0.012 23.1 15.8 37 58-94 67-103 (234)
492 PLN02939 transferase, transfer 23.6 1.1E+03 0.023 26.5 17.5 103 75-181 231-341 (977)
493 PF11577 NEMO: NF-kappa-B esse 23.6 3.3E+02 0.0072 20.7 8.3 55 57-114 7-61 (68)
494 cd07673 F-BAR_FCHO2 The F-BAR 23.4 5.8E+02 0.013 23.4 16.4 23 59-81 70-92 (269)
495 PRK10803 tol-pal system protei 23.4 2.1E+02 0.0046 26.1 5.8 39 121-159 63-101 (263)
496 PF08657 DASH_Spc34: DASH comp 23.3 4.2E+02 0.009 24.7 7.7 68 55-122 179-259 (259)
497 COG0172 SerS Seryl-tRNA synthe 23.3 7.8E+02 0.017 24.8 10.3 88 93-188 4-92 (429)
498 PTZ00454 26S protease regulato 23.3 2.7E+02 0.0059 27.0 6.8 47 45-91 18-64 (398)
499 PF09486 HrpB7: Bacterial type 23.2 5E+02 0.011 22.6 15.5 113 73-188 4-124 (158)
500 PRK03947 prefoldin subunit alp 23.2 4E+02 0.0088 21.5 11.0 95 66-165 9-140 (140)
No 1
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.79 E-value=0.017 Score=59.31 Aligned_cols=80 Identities=13% Similarity=0.142 Sum_probs=40.5
Q ss_pred CCccccccccCCCCCCCCCCCCC-CCchHhHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 025912 18 FTMSGRRVLREPPLSTRALPPQH-SPSLHHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASV 96 (246)
Q Consensus 18 ~~~~~r~~~~~~~~~~~~~p~p~-~p~~~~LEe~La~Q~~EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~i 96 (246)
-|.+|=.+.+.|.++.|....+. .........+|.....++..|-.+-..+-.....+.+++...+.++..+...+..+
T Consensus 642 vTldG~~~~~~G~~tgG~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~l~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~l 721 (1164)
T TIGR02169 642 VTLEGELFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEI 721 (1164)
T ss_pred EEeCceeEcCCcCccCCCCCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666655421110 00000113455555566666665555555555555666655555555554444444
Q ss_pred h
Q 025912 97 K 97 (246)
Q Consensus 97 ~ 97 (246)
+
T Consensus 722 ~ 722 (1164)
T TIGR02169 722 E 722 (1164)
T ss_pred H
Confidence 3
No 2
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.71 E-value=0.019 Score=58.88 Aligned_cols=48 Identities=17% Similarity=0.188 Sum_probs=22.2
Q ss_pred HHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 025912 47 LEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAA 94 (246)
Q Consensus 47 LEe~La~Q~~EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~ 94 (246)
++.++.....++..+-.+...+-.....|.+++...+.++..+..-+.
T Consensus 292 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~ 339 (1164)
T TIGR02169 292 VKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIE 339 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444444444333
No 3
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.63 E-value=0.029 Score=57.15 Aligned_cols=12 Identities=8% Similarity=0.210 Sum_probs=4.7
Q ss_pred hHHHHHHhhHHH
Q 025912 46 HLEDRIAIQHSD 57 (246)
Q Consensus 46 ~LEe~La~Q~~E 57 (246)
.++..+..-..+
T Consensus 702 ~~~~~l~~l~~~ 713 (1179)
T TIGR02168 702 ELRKELEELEEE 713 (1179)
T ss_pred HHHHHHHHHHHH
Confidence 344444333333
No 4
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.56 E-value=0.053 Score=55.34 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=11.6
Q ss_pred hHHHHHHhhHHHHHHHHHhhHHHH
Q 025912 46 HLEDRIAIQHSDIQSLLQDNQRLA 69 (246)
Q Consensus 46 ~LEe~La~Q~~EiqrLl~dNqRLA 69 (246)
-++.++..-+.++..+-..-+.+.
T Consensus 688 ~l~~~l~~~~~~~~~~~~~l~~l~ 711 (1179)
T TIGR02168 688 ELEEKIAELEKALAELRKELEELE 711 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555444433333
No 5
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.43 E-value=0.047 Score=49.19 Aligned_cols=115 Identities=23% Similarity=0.336 Sum_probs=89.1
Q ss_pred HHHHHHhhHHHHHHHHHhhHHHHHHH---------------HHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHh
Q 025912 47 LEDRIAIQHSDIQSLLQDNQRLAATH---------------VALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKS 111 (246)
Q Consensus 47 LEe~La~Q~~EiqrLl~dNqRLAatH---------------vaLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~ 111 (246)
|=+||+.--.=++.|=.+|++|-... ..+..+|..+++.|..+..-.+.+..+.+.--.++-+=-
T Consensus 9 LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r 88 (312)
T PF00038_consen 9 LNDRLASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLR 88 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHH
Confidence 45666666666666666666665433 335556666666666666667777777777777777778
Q ss_pred hhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025912 112 LKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARD 161 (246)
Q Consensus 112 ~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~ 161 (246)
.|+|.+......+..|+..++.++......|-+|-.++++|..||.-...
T Consensus 89 ~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~ 138 (312)
T PF00038_consen 89 RKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQ 138 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHh
Confidence 88999999999999999999999999999999999999999999887654
No 6
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=97.39 E-value=0.022 Score=52.99 Aligned_cols=133 Identities=19% Similarity=0.321 Sum_probs=78.5
Q ss_pred hHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhh----ch
Q 025912 46 HLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELR----VI 121 (246)
Q Consensus 46 ~LEe~La~Q~~EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelR----a~ 121 (246)
.|++.+..-..|-..|...-..|-.-...|+...+..+.|+..+......+....=.++..+-.....+..++. ..
T Consensus 153 ~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l 232 (325)
T PF08317_consen 153 GLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKEL 232 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666666666666667777777777666666555555666666666666666654 44
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhhHHHHHHHHHHHH
Q 025912 122 ESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARD-ESKDMAAIKAEIETERQ 178 (246)
Q Consensus 122 e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~-d~qqip~l~aEid~lrq 178 (246)
+.++.++..+..++..+...++++.++++.+.+.+...++ ....|..|+++++.|+.
T Consensus 233 ~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~ 290 (325)
T PF08317_consen 233 AELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALEK 290 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555555555544443332 44446666666665544
No 7
>PRK09039 hypothetical protein; Validated
Probab=97.15 E-value=0.044 Score=51.73 Aligned_cols=147 Identities=17% Similarity=0.235 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhh---hHHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 73 VALKQELSLAEQELRHLSSVAASVKA---ERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDL 149 (246)
Q Consensus 73 vaLrQeL~aaq~El~~l~~~i~~i~a---E~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qv 149 (246)
.-|.+++..-++||..|+..|.++-. =.-.....+=+++..+.+++++.+..|++|.-... .+.....++.+++
T Consensus 42 ~fLs~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~---~~~~~~~~~~~~~ 118 (343)
T PRK09039 42 FFLSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLA---ELAGAGAAAEGRA 118 (343)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhhhhcchHHHHH
Confidence 34555555555555555555544321 11112233444455555555555555555444332 2222233555556
Q ss_pred HHHHHHHHHHh----hhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccchhHHHHHHHHhHHHH----HHHHHHHHHH
Q 025912 150 NEINGDLAKAR----DESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISV----AQQIERLQAE 221 (246)
Q Consensus 150 q~ltqeL~r~~----~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEkNlisM----arEvEKLRaE 221 (246)
..+..+|...+ ....+|-.|+.+|+.||..+..+-++++.-+....+.-++...+++.|-.. +.|++++|.+
T Consensus 119 ~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~ 198 (343)
T PRK09039 119 GELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRYRSE 198 (343)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 55666665544 345568899999999999999999999998888899999999998887655 5577888887
Q ss_pred H
Q 025912 222 L 222 (246)
Q Consensus 222 l 222 (246)
+
T Consensus 199 ~ 199 (343)
T PRK09039 199 F 199 (343)
T ss_pred H
Confidence 7
No 8
>PRK11637 AmiB activator; Provisional
Probab=97.13 E-value=0.26 Score=47.07 Aligned_cols=76 Identities=13% Similarity=0.166 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccchhHHHHHHHHhHHHH
Q 025912 136 EKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISV 211 (246)
Q Consensus 136 q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEkNlisM 211 (246)
+.+...+++|..+-+.+..+++......+..-.-+++++..+.|-+.....++-+++.....+.+++.-++++-..
T Consensus 173 ~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~ 248 (428)
T PRK11637 173 AELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDS 248 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444445555555555555555555556656555555555555555555443
No 9
>PRK11637 AmiB activator; Provisional
Probab=97.11 E-value=0.27 Score=46.92 Aligned_cols=85 Identities=18% Similarity=0.233 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccchhHHHHH----HHHhHHHH
Q 025912 136 EKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREI----MEKNIISV 211 (246)
Q Consensus 136 q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qa----MEkNlisM 211 (246)
..+...++++..++....++|. ...+.+-.-+++++.+..++..-++.++-+++..-..+.+.+. -+.-+..+
T Consensus 162 ~~i~~~d~~~l~~l~~~~~~L~---~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l 238 (428)
T PRK11637 162 GYLNQARQETIAELKQTREELA---AQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSEL 238 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666555555555544 3344455566677777777777777777776664444433332 23344555
Q ss_pred HHHHHHHHHHHh
Q 025912 212 AQQIERLQAELA 223 (246)
Q Consensus 212 arEvEKLRaEla 223 (246)
.++..+|...|+
T Consensus 239 ~~~~~~L~~~I~ 250 (428)
T PRK11637 239 RANESRLRDSIA 250 (428)
T ss_pred HHHHHHHHHHHH
Confidence 555555555555
No 10
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.05 E-value=0.26 Score=49.98 Aligned_cols=167 Identities=24% Similarity=0.307 Sum_probs=89.0
Q ss_pred hHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchhhHH
Q 025912 46 HLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMH 125 (246)
Q Consensus 46 ~LEe~La~Q~~EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~lk 125 (246)
+|+.+|..-..|-..|+..|..|-..-..|+.++...+.+|.....-...++.+ .-++.....++..+ .+.|+
T Consensus 140 ~lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~----~kel~~~~e~l~~E---~~~L~ 212 (546)
T PF07888_consen 140 LLQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQ----QKELTESSEELKEE---RESLK 212 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH---HHHHH
Confidence 456666666666777777777777666666666666666666654444433332 22333333334333 44555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------hhhhhhHHHHHHHHHHHHHHHhhhhhhhhhccccc
Q 025912 126 AELDRVRADIEKLCVIKQEMIKDLNEINGDLAKAR----------DESKDMAAIKAEIETERQEIHKGRAAIECEKKNRA 195 (246)
Q Consensus 126 ~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~----------~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~ 195 (246)
.+...++..|.+|...-+.|+.++....+.+.+.+ ++++ --|+..+..+++++.. +..++ .-+-
T Consensus 213 ~q~~e~~~ri~~LEedi~~l~qk~~E~e~~~~~lk~~~~elEq~~~eLk--~rLk~~~~~~~~~~~~---~~~~~-~e~e 286 (546)
T PF07888_consen 213 EQLAEARQRIRELEEDIKTLTQKEKEQEKELDKLKELKAELEQLEAELK--QRLKETVVQLKQEETQ---AQQLQ-QENE 286 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhhh---hhhHH-HHHH
Confidence 55555666666666555555555533333333322 2211 0111111111111111 11111 2234
Q ss_pred chhHHHHHHHHhHHHHHHHHHHHHHHHhhH
Q 025912 196 SNHEQREIMEKNIISVAQQIERLQAELANA 225 (246)
Q Consensus 196 e~~Eq~qaMEkNlisMarEvEKLRaElana 225 (246)
...+|++.++.-+-+-=++++.|+.||..+
T Consensus 287 ~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~ 316 (546)
T PF07888_consen 287 ALKEQLRSAQEQLQASQQEAELLRKELSDA 316 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888888999999988665
No 11
>PRK02224 chromosome segregation protein; Provisional
Probab=97.04 E-value=0.34 Score=49.67 Aligned_cols=78 Identities=15% Similarity=0.260 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 73 VALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEI 152 (246)
Q Consensus 73 vaLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~l 152 (246)
-.+++++...+.++..+...+..++. ++..+-++...++......+.+..++..+...++++.....++..++..+
T Consensus 209 ~~~~~~l~el~~~i~~~~~~~~~l~~----~l~~l~~~~~el~~~~~~l~~l~~~~~~l~~~i~~~e~~~~~l~~~i~~~ 284 (880)
T PRK02224 209 NGLESELAELDEEIERYEEQREQARE----TRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDL 284 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433333322 22223333344444444444444444444444444444444444433333
Q ss_pred HH
Q 025912 153 NG 154 (246)
Q Consensus 153 tq 154 (246)
..
T Consensus 285 ~~ 286 (880)
T PRK02224 285 RE 286 (880)
T ss_pred HH
Confidence 33
No 12
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.93 E-value=0.28 Score=44.22 Aligned_cols=130 Identities=22% Similarity=0.302 Sum_probs=75.7
Q ss_pred HHHhhHHHHHHHHH---HHHHHHHHHHHHHHHHHh----hhhhhhhHHHH---HHHHHH----HhhhhHHhhhchhhHHH
Q 025912 61 LLQDNQRLAATHVA---LKQELSLAEQELRHLSSV----AASVKAERDAE---VRELYE----KSLKLDAELRVIESMHA 126 (246)
Q Consensus 61 Ll~dNqRLAatHva---LrQeL~aaq~El~~l~~~----i~~i~aE~e~q---iReL~e----k~~KmEAelRa~e~lk~ 126 (246)
|-.=|-|||.-.-. |-++=.....+|..+... .+.++.--+.+ +|..++ ...+|+.+ .+.++.
T Consensus 6 L~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e---~~~l~~ 82 (312)
T PF00038_consen 6 LQSLNDRLASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELE---IDNLKE 82 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH---HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhh---hhhHHH
Confidence 33448899865443 344445555555555333 22222222222 233333 23455555 678888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccc
Q 025912 127 ELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRAS 196 (246)
Q Consensus 127 El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e 196 (246)
|+..++.........|+.|-.++..+.++|..... ..-.|..+|.+|+.|+...+..++-|-+.--.
T Consensus 83 e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~---~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~ 149 (312)
T PF00038_consen 83 ELEDLRRKYEEELAERKDLEEELESLRKDLDEETL---ARVDLENQIQSLKEELEFLKQNHEEEIEELRE 149 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh---hHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Confidence 88888888888889999999999998888765432 23445566666666666666666655544333
No 13
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=96.89 E-value=0.35 Score=48.00 Aligned_cols=68 Identities=21% Similarity=0.399 Sum_probs=50.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-----------hHHHHHHHHHHHHHHHhhhhhhh
Q 025912 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKD-----------MAAIKAEIETERQEIHKGRAAIE 188 (246)
Q Consensus 121 ~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qq-----------ip~l~aEid~lrqElqr~Raa~E 188 (246)
+..++.||.++..++++....--.|...|.+|..||.+.+.+... |..|.+|++.++.||.-++....
T Consensus 283 l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~ 361 (522)
T PF05701_consen 283 LASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEE 361 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhc
Confidence 567788888888888877777777777788888777777766544 66777777777777766665543
No 14
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.84 E-value=0.28 Score=53.02 Aligned_cols=218 Identities=19% Similarity=0.242 Sum_probs=120.0
Q ss_pred Ccccccch---------hccccC---CCCCccccccccCCCCCCCCCCCCCCCc-----hHhHHHHHHhhHHHHHHH---
Q 025912 2 NIYGNSLH---------TTLHNH---SQFTMSGRRVLREPPLSTRALPPQHSPS-----LHHLEDRIAIQHSDIQSL--- 61 (246)
Q Consensus 2 ~~~~~~~~---------~~~h~~---~~~~~~~r~~~~~~~~~~~~~p~p~~p~-----~~~LEe~La~Q~~EiqrL--- 61 (246)
++|||+|= .+||.. +|.|..|=.|.+.|-++.|..++...+. ..-.+.+|.++..|+..|
T Consensus 620 fvFG~tlVc~~~d~AKkVaf~~~i~~rsVTl~GDV~dP~GtlTGGs~~~~a~~L~~l~~l~~~~~~~~~~q~el~~le~e 699 (1174)
T KOG0933|consen 620 FVFGSTLVCDSLDVAKKVAFDPKIRTRSVTLEGDVYDPSGTLTGGSRSKGADLLRQLQKLKQAQKELRAIQKELEALERE 699 (1174)
T ss_pred HHhCceEEecCHHHHHHhhcccccccceeeecCceeCCCCcccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777763 367765 7889999999999999888765432211 112344444444443322
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hhhhhHHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHH
Q 025912 62 LQDNQRLAATHVALKQELSLAEQELRHLSSVAA-----SVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIE 136 (246)
Q Consensus 62 l~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~-----~i~aE~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q 136 (246)
|.+=+-.+.----|+|+|.-..+|+-.+..-+. .+.++.+ ++.+..-.++.+|...+-.-.+ .-..+.
T Consensus 700 L~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~----~~~e~v~e~~~~Ike~~~~~k~---~~~~i~ 772 (1174)
T KOG0933|consen 700 LKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLK----ELLEEVEESEQQIKEKERALKK---CEDKIS 772 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 222233334445688888888888766532221 1111111 1222222233332222111111 111121
Q ss_pred HHHHH----HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccchhHHHHHHHHhHHHHH
Q 025912 137 KLCVI----KQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVA 212 (246)
Q Consensus 137 ~L~a~----RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEkNlisMa 212 (246)
.|... .-+=-.++..++++|..+. +++.+-..+.+.-.+|++++-..+|-.++..-..--|+..|++++-+..
T Consensus 773 ~lE~~~~d~~~~re~rlkdl~keik~~k---~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~ 849 (1174)
T KOG0933|consen 773 TLEKKMKDAKANRERRLKDLEKEIKTAK---QRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLK 849 (1174)
T ss_pred HHHHHHhHhhhhhHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22111 1112234444455544333 3344455566666677777777777777776677778899999999999
Q ss_pred HHHHHHHHHHhhHhhhH
Q 025912 213 QQIERLQAELANAEKRA 229 (246)
Q Consensus 213 rEvEKLRaElanaEkRa 229 (246)
.|+..|++.+.++++=.
T Consensus 850 ~e~~~l~~kv~~~~~~~ 866 (1174)
T KOG0933|consen 850 SELGNLEAKVDKVEKDV 866 (1174)
T ss_pred HHHHHHHHHHHhHHhHH
Confidence 99999999998887643
No 15
>PRK03918 chromosome segregation protein; Provisional
Probab=96.81 E-value=0.59 Score=47.65 Aligned_cols=80 Identities=18% Similarity=0.330 Sum_probs=42.5
Q ss_pred HHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhh
Q 025912 105 RELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGR 184 (246)
Q Consensus 105 ReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~R 184 (246)
..+-+...+++.++...+..+.++..+..+.+.|...-+.+..++..+.+++........++..+..+++.+...+....
T Consensus 217 ~~l~~~~~~~~~~l~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~el~~l~~~l~~l~~~~~~~~~l~~~~~~~~ 296 (880)
T PRK03918 217 PELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYI 296 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455555555555555555555555555555555555555555555555555555555555544444433
No 16
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.78 E-value=0.12 Score=48.02 Aligned_cols=175 Identities=22% Similarity=0.322 Sum_probs=135.3
Q ss_pred HHHHHHHHHhhHHHHH--------HHHHHHHHHHHHHHHHHH-HHHhhhhhhhhHHHHHHH-HHHHhhhhHHhhhch---
Q 025912 55 HSDIQSLLQDNQRLAA--------THVALKQELSLAEQELRH-LSSVAASVKAERDAEVRE-LYEKSLKLDAELRVI--- 121 (246)
Q Consensus 55 ~~EiqrLl~dNqRLAa--------tHvaLrQeL~aaq~El~~-l~~~i~~i~aE~e~qiRe-L~ek~~KmEAelRa~--- 121 (246)
|.|+.+=+.+-+++.. ..=.|=+|...|-.+.+. |...+..|++=.-++.+. -|+-..+|.-.|+.+
T Consensus 77 c~EL~~~I~egr~~~~~~E~~~~~~nPpLf~EY~~a~~d~r~~m~~q~~~vK~~aRl~aK~~WYeWR~~ll~gl~~~L~~ 156 (325)
T PF08317_consen 77 CRELKKYISEGRQIFEEIEEETYESNPPLFREYYTADPDMRLLMDNQFQLVKTYARLEAKKMWYEWRMQLLEGLKEGLEE 156 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555554444432 223355555445444443 466777777666666543 577777777776654
Q ss_pred --hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH-HHHHHHHHHHHHHHhhhhhhhhhcccccchh
Q 025912 122 --ESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMA-AIKAEIETERQEIHKGRAAIECEKKNRASNH 198 (246)
Q Consensus 122 --e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip-~l~aEid~lrqElqr~Raa~EyEKK~~~e~~ 198 (246)
+.|+.|...+......|......|...-+.|..++..++.-...+- .=+.|+..+|+||......++.-|+.-.+.-
T Consensus 157 ~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~ 236 (325)
T PF08317_consen 157 NLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQ 236 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999888766544 3367899999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhHhhhH
Q 025912 199 EQREIMEKNIISVAQQIERLQAELANAEKRA 229 (246)
Q Consensus 199 Eq~qaMEkNlisMarEvEKLRaElanaEkRa 229 (246)
.+++..+..+-.+..+..++.++|+++++.-
T Consensus 237 ~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~ 267 (325)
T PF08317_consen 237 EELEELEEKIEELEEQKQELLAEIAEAEKIR 267 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998653
No 17
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.74 E-value=0.79 Score=49.37 Aligned_cols=66 Identities=18% Similarity=0.215 Sum_probs=33.3
Q ss_pred cCCCCCccccccccCCCCCCCCCCCCCCCc----hHhHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHH
Q 025912 14 NHSQFTMSGRRVLREPPLSTRALPPQHSPS----LHHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQEL 79 (246)
Q Consensus 14 ~~~~~~~~~r~~~~~~~~~~~~~p~p~~p~----~~~LEe~La~Q~~EiqrLl~dNqRLAatHvaLrQeL 79 (246)
.-+--|.+|-.+.+.|.++.|.......+. ..-|+++|..-...+..+..+...+-...-.+...+
T Consensus 635 ~~riVTl~G~~~~~~G~~tGG~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (1163)
T COG1196 635 KYRIVTLDGDLVEPSGSITGGSRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLL 704 (1163)
T ss_pred CceEEecCCcEEeCCeeeecCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446677888888888888777322111111 112455555555555555444444433333333333
No 18
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.57 E-value=0.44 Score=51.82 Aligned_cols=173 Identities=13% Similarity=0.229 Sum_probs=97.5
Q ss_pred HhhHHHHHHHHHhhHHHH---HHHHHHH-HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchhhHHHH
Q 025912 52 AIQHSDIQSLLQDNQRLA---ATHVALK-QELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAE 127 (246)
Q Consensus 52 a~Q~~EiqrLl~dNqRLA---atHvaLr-QeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~lk~E 127 (246)
...-.++...+.+-+.|- ++...+. .++...+.++..+..-+..++.+ +.++--...++..++.+.+.+...
T Consensus 715 ~~~~~~~~~~~e~l~~l~~~~~~~~~l~~~eip~l~~~l~~le~~l~~~~~~----le~~~~~l~~~~~~~~~~esL~~~ 790 (1311)
T TIGR00606 715 ESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKND----IEEQETLLGTIMPEEESAKVCLTD 790 (1311)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHH
Confidence 333334555555544442 3444443 56677777777766666554433 445555555666676666555554
Q ss_pred H---HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHhhh----hhhhHHHHHHHHHHHHHHHhh---hhhhh
Q 025912 128 L---DRVRADIEKLCVIKQEMIKDLN---------EINGDLAKARDE----SKDMAAIKAEIETERQEIHKG---RAAIE 188 (246)
Q Consensus 128 l---~Q~r~e~q~L~a~RQELs~qvq---------~ltqeL~r~~~d----~qqip~l~aEid~lrqElqr~---Raa~E 188 (246)
+ ..+..|+..|...-.+|..+++ .+..++.....+ ...++.+..+.+.+..+|..+ -..+.
T Consensus 791 v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~ 870 (1311)
T TIGR00606 791 VTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELK 870 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 3344444444433333333222 223333332222 223455666667777777777 34444
Q ss_pred hhcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhHhhh
Q 025912 189 CEKKNRASNHEQREIMEKNIISVAQQIERLQAELANAEKR 228 (246)
Q Consensus 189 yEKK~~~e~~Eq~qaMEkNlisMarEvEKLRaElanaEkR 228 (246)
-++-.-.+.+.+.+..|..+-.+..+++++++++..++..
T Consensus 871 ~~klkl~~~l~~r~~le~~L~el~~el~~l~~~~~~~~~~ 910 (1311)
T TIGR00606 871 SEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQ 910 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555577788888999999999999999988776543
No 19
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.57 E-value=1 Score=48.59 Aligned_cols=62 Identities=18% Similarity=0.297 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhHhhh
Q 025912 167 AAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANAEKR 228 (246)
Q Consensus 167 p~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEkNlisMarEvEKLRaElanaEkR 228 (246)
..+..+++.++.++..+-..+..-+....+.-.+....+.++..+..++++++..+...+.+
T Consensus 859 ~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 920 (1163)
T COG1196 859 EELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAK 920 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555555555566666666666666666666666666543333
No 20
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=96.44 E-value=0.35 Score=43.56 Aligned_cols=119 Identities=22% Similarity=0.391 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------hh
Q 025912 100 RDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKA------------------RD 161 (246)
Q Consensus 100 ~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~------------------~~ 161 (246)
+|.++.++-+....-..+ .+.-..||++...|+.-|...-..|..++..|..++... +.
T Consensus 50 ~~~~~~~l~~~~~~K~~E---LE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~ 126 (202)
T PF06818_consen 50 KESQIQELQDSLRTKQLE---LEVCENELQRKKNEAELLREKLGQLEAELAELREELACAGRLKRQCQLLSESDEAKAQR 126 (202)
T ss_pred hHHHHHHHHHHHHHhhHh---HHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhhccchhhhccccccchhHHhh
Confidence 455555555544443444 344566677666666655555555555666666666554 11
Q ss_pred --hhhhhHHHHHHHHHHHHHHHhhh-------hhhhhhcccccchhHH----HHHHHHhHHHHHHHHHHHHHH
Q 025912 162 --ESKDMAAIKAEIETERQEIHKGR-------AAIECEKKNRASNHEQ----REIMEKNIISVAQQIERLQAE 221 (246)
Q Consensus 162 --d~qqip~l~aEid~lrqElqr~R-------aa~EyEKK~~~e~~Eq----~qaMEkNlisMarEvEKLRaE 221 (246)
...-++.|+.++|.|+.||...| ..||-|+.+-.+--|. -+-+-.|||-|-+=-..|-.+
T Consensus 127 ~~~~~~~~~l~~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W~eEKekVi~YQkQLQ~nYvqMy~rn~~LE~~ 199 (202)
T PF06818_consen 127 QAGEDELGSLRREVERLRAELQRERQRREEQRSSFEQERRTWQEEKEKVIRYQKQLQQNYVQMYQRNQALERE 199 (202)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12347778888888888888654 5899998775554443 356677999997654444433
No 21
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.37 E-value=1.1 Score=48.99 Aligned_cols=54 Identities=22% Similarity=0.273 Sum_probs=37.2
Q ss_pred HHHHhhhhhhhhhcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhHhhhHhHHH
Q 025912 178 QEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANAEKRARAAA 233 (246)
Q Consensus 178 qElqr~Raa~EyEKK~~~e~~Eq~qaMEkNlisMarEvEKLRaElanaEkRa~a~~ 233 (246)
+|+..++..+.-=...++...-+++.++..+-.+-.|++. .+..|+++|.+-+.
T Consensus 1054 ~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL~e--~~yk~a~~ryrka~ 1107 (1311)
T TIGR00606 1054 QEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELRE--PQFRDAEEKYREMM 1107 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--hHHHHHHHHHHHHH
Confidence 3333334333333456677788889999999999999865 77888888876553
No 22
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=96.32 E-value=0.59 Score=40.00 Aligned_cols=122 Identities=19% Similarity=0.343 Sum_probs=67.1
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH----HHHHHHHHHHhhhhHHhhhch-hhHHHHHHHHH
Q 025912 58 IQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAER----DAEVRELYEKSLKLDAELRVI-ESMHAELDRVR 132 (246)
Q Consensus 58 iqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~----e~qiReL~ek~~KmEAelRa~-e~lk~El~Q~r 132 (246)
+..++.+|-..+...++-|.|+..... .+.+.+..+++|- +.++-.+-....+|..|+... ..++.|+.+++
T Consensus 28 l~~~l~~~~~~~~~~~vtk~d~e~~~~---~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~ 104 (177)
T PF07798_consen 28 LREVLNDSLEKVAQDLVTKSDLENQEY---LFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQELREEINKLR 104 (177)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888777788888888776443 3445566666554 344444555556666666555 33666666666
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhh-hhhHHHHHHHHHHHHHHHh
Q 025912 133 ADIEK-LCVIKQEMIKDLNEINGDLAKARDES-KDMAAIKAEIETERQEIHK 182 (246)
Q Consensus 133 ~e~q~-L~a~RQELs~qvq~ltqeL~r~~~d~-qqip~l~aEid~lrqElqr 182 (246)
+|++- ++-.|.+.......+...++...... ..|..|+++|+.++-++.+
T Consensus 105 a~~klD~n~eK~~~r~e~~~~~~ki~e~~~ki~~ei~~lr~~iE~~K~~~lr 156 (177)
T PF07798_consen 105 AEVKLDLNLEKGRIREEQAKQELKIQELNNKIDTEIANLRTEIESLKWDTLR 156 (177)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66652 22233333333333333333222221 1245566666666666543
No 23
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.20 E-value=1.5 Score=44.61 Aligned_cols=76 Identities=16% Similarity=0.283 Sum_probs=35.7
Q ss_pred hHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-------hhHHH---HHHHHHHHhhhhH
Q 025912 46 HLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVK-------AERDA---EVRELYEKSLKLD 115 (246)
Q Consensus 46 ~LEe~La~Q~~EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~i~-------aE~e~---qiReL~ek~~KmE 115 (246)
..+.+...-..+...|=.++.-|-..--.|+.+|...+++...|.....++. .|++. +.-+..+++.++|
T Consensus 147 ~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LE 226 (546)
T PF07888_consen 147 ECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELE 226 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444445555555555555555555555555555554443333322 22221 2233455566666
Q ss_pred Hhhhch
Q 025912 116 AELRVI 121 (246)
Q Consensus 116 AelRa~ 121 (246)
.++..+
T Consensus 227 edi~~l 232 (546)
T PF07888_consen 227 EDIKTL 232 (546)
T ss_pred HHHHHH
Confidence 665544
No 24
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.18 E-value=1.1 Score=51.24 Aligned_cols=141 Identities=21% Similarity=0.263 Sum_probs=72.0
Q ss_pred HHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchhhHHHHHH
Q 025912 50 RIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELD 129 (246)
Q Consensus 50 ~La~Q~~EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~lk~El~ 129 (246)
++..-...+...-.-|-.|=-+...|+||+..+.-++++...++..+..-.-.----|.+.-.++|.=.--.+....|+.
T Consensus 1387 ~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r 1466 (1930)
T KOG0161|consen 1387 RLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELR 1466 (1930)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555555566666677888888888888887776555544322211111112222222222222344455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhh
Q 025912 130 RVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECE 190 (246)
Q Consensus 130 Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyE 190 (246)
+...++++|...=.++..++.++..+-..++.+...+-.=..|...-.+|++..+..+|.|
T Consensus 1467 ~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e 1527 (1930)
T KOG0161|consen 1467 QLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQE 1527 (1930)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555555555555555555555555555555555555444
No 25
>PRK02224 chromosome segregation protein; Provisional
Probab=96.04 E-value=1.5 Score=45.06 Aligned_cols=20 Identities=15% Similarity=0.215 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 025912 70 ATHVALKQELSLAEQELRHL 89 (246)
Q Consensus 70 atHvaLrQeL~aaq~El~~l 89 (246)
.....|+.++...+.++..+
T Consensus 213 ~~l~el~~~i~~~~~~~~~l 232 (880)
T PRK02224 213 SELAELDEEIERYEEQREQA 232 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444443333
No 26
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=95.97 E-value=0.81 Score=45.48 Aligned_cols=21 Identities=14% Similarity=0.177 Sum_probs=17.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHH
Q 025912 201 REIMEKNIISVAQQIERLQAE 221 (246)
Q Consensus 201 ~qaMEkNlisMarEvEKLRaE 221 (246)
.++||..|..+-+|+|.-++-
T Consensus 409 i~t~E~rL~aa~ke~eaaKas 429 (522)
T PF05701_consen 409 IKTAEERLEAALKEAEAAKAS 429 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 468888899999998888764
No 27
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=95.97 E-value=2.1 Score=45.25 Aligned_cols=91 Identities=27% Similarity=0.336 Sum_probs=74.6
Q ss_pred HHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------------hhhhhhhHHHHHHHHHH
Q 025912 50 RIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSV--------------------AASVKAERDAEVRELYE 109 (246)
Q Consensus 50 ~La~Q~~EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~--------------------i~~i~aE~e~qiReL~e 109 (246)
++..-..+.+.+-.+|+++-.+--+|+-+| -++.|+.+|..- +..+.+|+|...+++-.
T Consensus 54 ~l~~~k~qlr~~q~e~q~~~~ei~~LqeEL-r~q~e~~rL~~~~e~~~~e~e~l~~ld~~~~q~~rl~~E~er~~~El~~ 132 (775)
T PF10174_consen 54 ELSRLKEQLRVTQEENQKAQEEIQALQEEL-RAQRELNRLQQELEKAQYEFESLQELDKAQEQFERLQAERERLQRELER 132 (775)
T ss_pred HHHhHHHHHHHHHhhHHHHHHHHHHHHHHH-HHhhHHHHHHHHhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 566778899999999999999999999999 999999999765 44566788888888877
Q ss_pred HhhhhHHhhhchhhHHHHHHHHHHHHHHHHHH
Q 025912 110 KSLKLDAELRVIESMHAELDRVRADIEKLCVI 141 (246)
Q Consensus 110 k~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~ 141 (246)
-..++|.-=--++.++.++.....++.+|...
T Consensus 133 lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~ 164 (775)
T PF10174_consen 133 LRKTLEELQLRIETQQQTLDKADEEIEKLQEM 164 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666655455788888888888888888773
No 28
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=95.91 E-value=1.2 Score=42.80 Aligned_cols=42 Identities=17% Similarity=0.162 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhhhh
Q 025912 148 DLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIEC 189 (246)
Q Consensus 148 qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~Ey 189 (246)
+++.+..++.+-......+..+..+++.++.++..+++.+.-
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~i~~~~~~~~~ 261 (457)
T TIGR01000 220 QLKSASDKDQKNQVKSTILATIQQQIDQLQKSIASYQVQKAG 261 (457)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333333333333333446777788888888888888887654
No 29
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=95.90 E-value=0.087 Score=43.59 Aligned_cols=74 Identities=18% Similarity=0.319 Sum_probs=64.4
Q ss_pred hhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhhh
Q 025912 112 LKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIE 188 (246)
Q Consensus 112 ~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~E 188 (246)
-+|-+.||..| .|+..++.++..|...|..|..++=.++.+....++..++++.|+.+++.|++.++-+--.|.
T Consensus 19 e~L~s~lr~~E---~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellG 92 (120)
T PF12325_consen 19 ERLQSQLRRLE---GELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLG 92 (120)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34566665544 588999999999999999999999999999999999999999999999999999887776654
No 30
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=95.83 E-value=1.4 Score=41.58 Aligned_cols=133 Identities=22% Similarity=0.323 Sum_probs=66.0
Q ss_pred hHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhh----hch
Q 025912 46 HLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAEL----RVI 121 (246)
Q Consensus 46 ~LEe~La~Q~~EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAel----Ra~ 121 (246)
.|++.+..-..|-..|..+-+.+-.-.-.|+.-....+.|+..|......+..=.--+.+.+-+++.+...++ ...
T Consensus 148 ~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l 227 (312)
T smart00787 148 GLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKL 227 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555555566666666666677666665555543322234444444444444442 222
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHH
Q 025912 122 ESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKAR-DESKDMAAIKAEIETERQ 178 (246)
Q Consensus 122 e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~-~d~qqip~l~aEid~lrq 178 (246)
+.++.++..+.+.|......++++.++++.+.+.+..-+ -+...|..|++.++.|++
T Consensus 228 ~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~ 285 (312)
T smart00787 228 EELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQS 285 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444443322 233445555655555544
No 31
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=95.76 E-value=0.83 Score=43.90 Aligned_cols=56 Identities=7% Similarity=0.182 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhhh
Q 025912 133 ADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIE 188 (246)
Q Consensus 133 ~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~E 188 (246)
.....+.+....|..++..+.+++++.+.+.+++|....|+..|..|+.-.+..|+
T Consensus 317 ~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~ 372 (498)
T TIGR03007 317 IELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYE 372 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444445555666667777777777777777777777777777776666554
No 32
>PRK03918 chromosome segregation protein; Provisional
Probab=95.66 E-value=3 Score=42.64 Aligned_cols=21 Identities=19% Similarity=0.444 Sum_probs=10.0
Q ss_pred HHHhHHHHHHHHHHHHHHHhh
Q 025912 204 MEKNIISVAQQIERLQAELAN 224 (246)
Q Consensus 204 MEkNlisMarEvEKLRaElan 224 (246)
+++.......++.+|++++.+
T Consensus 396 l~~~~~~l~~~i~~l~~~~~~ 416 (880)
T PRK03918 396 LEKAKEEIEEEISKITARIGE 416 (880)
T ss_pred HHHhHHHHHHHHHHHHHHHHH
Confidence 333334445555555555443
No 33
>PRK04863 mukB cell division protein MukB; Provisional
Probab=95.62 E-value=2.1 Score=48.10 Aligned_cols=163 Identities=14% Similarity=0.182 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH-------HHHHH----HHhhhhHHhhhc----hhhHHHHHHHHHHH
Q 025912 70 ATHVALKQELSLAEQELRHLSSVAASVKAERDAE-------VRELY----EKSLKLDAELRV----IESMHAELDRVRAD 134 (246)
Q Consensus 70 atHvaLrQeL~aaq~El~~l~~~i~~i~aE~e~q-------iReL~----ek~~KmEAelRa----~e~lk~El~Q~r~e 134 (246)
.+|-.|+++...+++-++.+++.+-.+.-=.+.. .-.++ +..-+++..+.- .+..+.++.+++.+
T Consensus 935 ~~~e~lr~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~l~~~~~~~~~Le~~Le~iE~~~~~areql~qaq~q 1014 (1486)
T PRK04863 935 EQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQRRAHFSYEDAAEMLAKNSDLNEKLRQRLEQAEQERTRAREQLRQAQAQ 1014 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHhHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999998877665543211000 00000 111122222222 34566667777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH---------HHHHHHHHHHHHHHhhhhhhhhhcccccchhHHHHHHH
Q 025912 135 IEKLCVIKQEMIKDLNEINGDLAKARDESKDMA---------AIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIME 205 (246)
Q Consensus 135 ~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip---------~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaME 205 (246)
.++....-..+...++.+.+.|..+..+.+.++ -.++.-|.|.+.|...|+-..+=-|.....-..++.++
T Consensus 1015 ~~q~~q~l~slksslq~~~e~L~E~eqe~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~re~EIe~L~ 1094 (1486)
T PRK04863 1015 LAQYNQVLASLKSSYDAKRQMLQELKQELQDLGVPADSGAEERARARRDELHARLSANRSRRNQLEKQLTFCEAEMDNLT 1094 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777777777777754 24455688999999999988877777778888899999
Q ss_pred HhHHHHHHHHHHHHHHHhhHhhhHhHHH
Q 025912 206 KNIISVAQQIERLQAELANAEKRARAAA 233 (246)
Q Consensus 206 kNlisMarEvEKLRaElanaEkRa~a~~ 233 (246)
+++-..-++.+-+|.++.++-.+ |-+.
T Consensus 1095 kkL~~~~~e~~~~re~I~~aK~~-W~~v 1121 (1486)
T PRK04863 1095 KKLRKLERDYHEMREQVVNAKAG-WCAV 1121 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 99999999999999999888665 7665
No 34
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=95.54 E-value=1.1 Score=37.87 Aligned_cols=113 Identities=17% Similarity=0.253 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHH
Q 025912 66 QRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEM 145 (246)
Q Consensus 66 qRLAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQEL 145 (246)
.++-.+-..+.+.+...++|+..+...+.+...+-+..-...+.-...++.--...+.++.+......++..|....+++
T Consensus 77 ~~~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~ 156 (191)
T PF04156_consen 77 PRLQGELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQKELQDS 156 (191)
T ss_pred hhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555555555544444444433332222222221111111122334444444444444555555566
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q 025912 146 IKDLNEINGDLAKARDESKDMAAIKAEIETERQ 178 (246)
Q Consensus 146 s~qvq~ltqeL~r~~~d~qqip~l~aEid~lrq 178 (246)
-..++.+..++.+.+.+.+++-...++...+++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~ 189 (191)
T PF04156_consen 157 REEVQELRSQLERLQENLQQLEEKIQELQELLE 189 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666666666666666666666666666666554
No 35
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.38 E-value=1.4 Score=45.21 Aligned_cols=122 Identities=18% Similarity=0.236 Sum_probs=100.2
Q ss_pred HHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Q 025912 101 DAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEI 180 (246)
Q Consensus 101 e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqEl 180 (246)
+..-|+|++++.-.|++=...+.+|..-.-++.|+.|+.+.=..+.++-|.+.+.|.+.+++. -..-.|++.|+++.
T Consensus 241 ~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Ei---e~kEeE~e~lq~~~ 317 (581)
T KOG0995|consen 241 KKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEI---EEKEEEIEKLQKEN 317 (581)
T ss_pred HHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 445688999999777777778999999999999999999999999999999999999998874 45678999999999
Q ss_pred HhhhhhhhhhcccccchhHHH----HHHHHhHHHHHHHHHHHHHHHhhHh
Q 025912 181 HKGRAAIECEKKNRASNHEQR----EIMEKNIISVAQQIERLQAELANAE 226 (246)
Q Consensus 181 qr~Raa~EyEKK~~~e~~Eq~----qaMEkNlisMarEvEKLRaElanaE 226 (246)
..++.-||.- +-+++.+|+| ...++++--|-.++++|+-++=+.+
T Consensus 318 d~Lk~~Ie~Q-~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~ 366 (581)
T KOG0995|consen 318 DELKKQIELQ-GISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELK 366 (581)
T ss_pred HHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 9999999886 6667777765 4567777777777777777765443
No 36
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=95.23 E-value=1.4 Score=45.85 Aligned_cols=20 Identities=25% Similarity=0.521 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhhHhhhHhH
Q 025912 212 AQQIERLQAELANAEKRARA 231 (246)
Q Consensus 212 arEvEKLRaElanaEkRa~a 231 (246)
=.|+.|||.||...|.+-+.
T Consensus 551 E~E~~~lr~elk~kee~~~~ 570 (697)
T PF09726_consen 551 ESELKKLRRELKQKEEQIRE 570 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 37899999998887766543
No 37
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=94.90 E-value=1.9 Score=41.23 Aligned_cols=106 Identities=17% Similarity=0.220 Sum_probs=71.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH-HHH----HHHHHhhhhHHhhhchhhHHHHHHHHHHH
Q 025912 60 SLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDA-EVR----ELYEKSLKLDAELRVIESMHAELDRVRAD 134 (246)
Q Consensus 60 rLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~e~-qiR----eL~ek~~KmEAelRa~e~lk~El~Q~r~e 134 (246)
..-..|..|..+-..|||.|..+|-|+.-|...+.+.+...+- ..+ +=-+-+..||.==.-.+.+-.|++.+--|
T Consensus 76 ~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDE 155 (319)
T PF09789_consen 76 ESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDE 155 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445799999999999999999999999999988887754321 111 11111222222222245555666666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhh
Q 025912 135 IEKLCVIKQEMIKDLNEINGDLAKAR-DESKD 165 (246)
Q Consensus 135 ~q~L~a~RQELs~qvq~ltqeL~r~~-~d~qq 165 (246)
.+.|...|...-.+++.|++||.-+- +|...
T Consensus 156 keEl~~ERD~yk~K~~RLN~ELn~~L~g~~~r 187 (319)
T PF09789_consen 156 KEELVTERDAYKCKAHRLNHELNYILNGDENR 187 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 77777778888889999999998754 44443
No 38
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=94.82 E-value=2.6 Score=38.83 Aligned_cols=130 Identities=20% Similarity=0.324 Sum_probs=70.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH----------HHHHHHHHHHhhhhHHhhhchhhHHH
Q 025912 57 DIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAER----------DAEVRELYEKSLKLDAELRVIESMHA 126 (246)
Q Consensus 57 EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~----------e~qiReL~ek~~KmEAelRa~e~lk~ 126 (246)
.||.|-..+-||+.-.-.-+.+|..++-|+-+++..+.+++.+- +..++++=+|+.+.|-.+-++- =-.
T Consensus 11 ~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~-~~~ 89 (239)
T COG1579 11 AIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVK-DER 89 (239)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cHH
Confidence 34455555555555555555555555555555554444333322 3345555666666666652222 223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhh
Q 025912 127 ELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECE 190 (246)
Q Consensus 127 El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyE 190 (246)
|+..+-.|++.+..-.-.|..++..+..++.+... ++-.++..+..++..+--++..+|.|
T Consensus 90 e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~---~i~~l~~~~~~~e~~~~e~~~~~e~e 150 (239)
T COG1579 90 ELRALNIEIQIAKERINSLEDELAELMEEIEKLEK---EIEDLKERLERLEKNLAEAEARLEEE 150 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666666666666666555432 34455556666666666666666554
No 39
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=94.82 E-value=2.1 Score=42.85 Aligned_cols=162 Identities=11% Similarity=0.192 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH-HHHHHHHHHHhhh----hHHhhhchhhHHHHHHHHHHHHHHHHHH
Q 025912 67 RLAATHVALKQELSLAEQELRHLSSVAASVKAER-DAEVRELYEKSLK----LDAELRVIESMHAELDRVRADIEKLCVI 141 (246)
Q Consensus 67 RLAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~-e~qiReL~ek~~K----mEAelRa~e~lk~El~Q~r~e~q~L~a~ 141 (246)
...=+|+.+-.++...+..|......|+.+.-+. +..+.++-+++-. ||.|..|...+......+...+..+...
T Consensus 246 gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~ 325 (569)
T PRK04778 246 GYHLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQ 325 (569)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3444566677777777777777666666665443 2233333333332 3455555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhh-------hhhhhcccccchhHHHHHHHHhHHHHHHH
Q 025912 142 KQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRA-------AIECEKKNRASNHEQREIMEKNIISVAQQ 214 (246)
Q Consensus 142 RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Ra-------a~EyEKK~~~e~~Eq~qaMEkNlisMarE 214 (246)
-++|..++..+++.-.-...|...+-.+..+|+.+...+..... .|.-=++..-+..++...+++....+...
T Consensus 326 ~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~ 405 (569)
T PRK04778 326 NKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEM 405 (569)
T ss_pred HHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555444332234444555555555555555554443 33333455556667777888888888888
Q ss_pred HHHHHHHHhhHhhh
Q 025912 215 IERLQAELANAEKR 228 (246)
Q Consensus 215 vEKLRaElanaEkR 228 (246)
+..||.+-..|.++
T Consensus 406 l~~Lrk~E~eAr~k 419 (569)
T PRK04778 406 LQGLRKDELEAREK 419 (569)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888887776554
No 40
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=94.80 E-value=4.2 Score=44.49 Aligned_cols=147 Identities=18% Similarity=0.287 Sum_probs=73.7
Q ss_pred CCCCccccccccCCC----CCCCCCCCCCCCc-hHhHHHHHHhhHHHHHHHHH-----hh----------------HHHH
Q 025912 16 SQFTMSGRRVLREPP----LSTRALPPQHSPS-LHHLEDRIAIQHSDIQSLLQ-----DN----------------QRLA 69 (246)
Q Consensus 16 ~~~~~~~r~~~~~~~----~~~~~~p~p~~p~-~~~LEe~La~Q~~EiqrLl~-----dN----------------qRLA 69 (246)
.-+|.+||+.+-.|| ++.++++++.|+. -.-+++.|..-..|+-+|=. .| ++|-
T Consensus 623 ~aytldg~~~~~~g~~~~~ySt~~~~~r~~~~~~~s~d~~ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~ 702 (1074)
T KOG0250|consen 623 KAYTLDGRQIFAGGPNYRVYSTRGTRARRPGVDEFSFDDEIEDLEREASRLQKEILELENQRREAEKNLEELEKKLRELS 702 (1074)
T ss_pred eeeccCccccccCCCCcceeccCCCCCCCccccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 447888999998887 6666554432222 11233333322222222211 11 2233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhh----hHHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHH
Q 025912 70 ATHVALKQELSLAEQELRHLSSVAASVKA----ERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEM 145 (246)
Q Consensus 70 atHvaLrQeL~aaq~El~~l~~~i~~i~a----E~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQEL 145 (246)
.....++..+-....||..|...+ .... .-|-..+++.++...+|..-...+-++.|+.++..+++++...--..
T Consensus 703 ~~~~q~~~~~~~~~~em~el~n~~-e~~~~~~~~~~~l~~ei~~~~~eIe~~~~~~e~l~~e~e~~~~e~~e~~~~~~~~ 781 (1074)
T KOG0250|consen 703 EHIEQIKRRIRKKRAEMTELKNTA-EEKQVDISKLEDLAREIKKKEKEIEEKEAPLEKLKEELEHIELEAQELEEYYAAG 781 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhh-hhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555554421 1111 01223344444555555555556777778888888777777666666
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 025912 146 IKDLNEINGDLAKARDES 163 (246)
Q Consensus 146 s~qvq~ltqeL~r~~~d~ 163 (246)
+..+|+..+.|..+..++
T Consensus 782 ~~~l~~e~~~l~~l~~el 799 (1074)
T KOG0250|consen 782 REKLQGEISKLDALKEEL 799 (1074)
T ss_pred HHHHHHHHHHhhHHHHHH
Confidence 666555555555444443
No 41
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=94.62 E-value=1.1 Score=45.92 Aligned_cols=120 Identities=13% Similarity=0.223 Sum_probs=63.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH-----HHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHH
Q 025912 65 NQRLAATHVALKQELSLAEQELRHLSSVAASVKAER-----DAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLC 139 (246)
Q Consensus 65 NqRLAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~-----e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~ 139 (246)
|..-..+-.=|.++|...+++|...-..+.+.+.++ +.+...+++++..+++++-......+++.+.-.+ =.
T Consensus 262 ~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~~~~---~h 338 (726)
T PRK09841 262 AAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREAEISQLYKK---DH 338 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cC
Confidence 344444555566677777777766666666666654 3344556666666655544443333333221000 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhh
Q 025912 140 VIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAI 187 (246)
Q Consensus 140 a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~ 187 (246)
-.=+.|..+++.+.+++++++...+++|....|+..|..+..-.|..|
T Consensus 339 P~v~~l~~~~~~L~~~~~~l~~~~~~~p~~e~~~~~L~R~~~~~~~lY 386 (726)
T PRK09841 339 PTYRALLEKRQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAVY 386 (726)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 001233334455566666666666667766666666666665555444
No 42
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=94.60 E-value=11 Score=43.82 Aligned_cols=49 Identities=22% Similarity=0.366 Sum_probs=24.7
Q ss_pred HHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 025912 47 LEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAAS 95 (246)
Q Consensus 47 LEe~La~Q~~EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~ 95 (246)
|++++..+..-|..|..+=.-|=.-|--|..+|...++.+..++-...+
T Consensus 969 l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~k 1017 (1930)
T KOG0161|consen 969 LEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAK 1017 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444454444444455555555555555555555444443
No 43
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=94.57 E-value=3.4 Score=41.50 Aligned_cols=178 Identities=13% Similarity=0.231 Sum_probs=131.9
Q ss_pred hHHHHHHhhHHHHHH----HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH-HHHHHHHHHHhh----hhHH
Q 025912 46 HLEDRIAIQHSDIQS----LLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAER-DAEVRELYEKSL----KLDA 116 (246)
Q Consensus 46 ~LEe~La~Q~~Eiqr----Ll~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~-e~qiReL~ek~~----KmEA 116 (246)
-+...+-.|-.|++. +..++ +.=+|..+-.++...+..+......+..+.-+. +..+.++.+++- .||.
T Consensus 219 ~l~~~~P~ql~eL~~gy~~m~~~g--y~l~~~~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~ 296 (560)
T PF06160_consen 219 ELQKEFPDQLEELKEGYREMEEEG--YYLEHLDIEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYDILEK 296 (560)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHCC--CCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555543 44433 555688888888888888888888777765443 222222333322 4688
Q ss_pred hhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccc
Q 025912 117 ELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRAS 196 (246)
Q Consensus 117 elRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e 196 (246)
|+.|...+...+..+...+..+...=++|..++..+.+--.=...+....-.+..+|+.+...+......++-.+..|..
T Consensus 297 E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~ 376 (560)
T PF06160_consen 297 EVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSE 376 (560)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHH
Confidence 88888888888888888888888888888888777777665566788888999999999999999999999999999999
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHhhH
Q 025912 197 NHEQREIMEKNIISVAQQIERLQAELANA 225 (246)
Q Consensus 197 ~~Eq~qaMEkNlisMarEvEKLRaElana 225 (246)
..+..+.+.++|-.+-.+...+...|.+.
T Consensus 377 i~~~l~~~~~~l~~ie~~q~~~~~~l~~L 405 (560)
T PF06160_consen 377 IQEELEEIEEQLEEIEEEQEEINESLQSL 405 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888777777766666666555
No 44
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=94.50 E-value=3.2 Score=36.71 Aligned_cols=112 Identities=21% Similarity=0.322 Sum_probs=56.4
Q ss_pred hHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchhh--
Q 025912 46 HLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIES-- 123 (246)
Q Consensus 46 ~LEe~La~Q~~EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~-- 123 (246)
-|.+.|..-+.+|+.|..||+-|=.-. .||+-+-.+-| .-.+-++.+-.=..-+||.|=++..+.....++.+.
T Consensus 16 ~L~n~l~elq~~l~~l~~ENk~Lk~lq--~Rq~kAL~k~e--~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~kl 91 (194)
T PF15619_consen 16 ELQNELAELQRKLQELRKENKTLKQLQ--KRQEKALQKYE--DTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKL 91 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588899999999999999999875433 33332211110 111112222222333334444444433333333321
Q ss_pred --HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHhh
Q 025912 124 --MHAELDRVRADIEKLCV--------IKQEMIKDLNEINGDLAKARD 161 (246)
Q Consensus 124 --lk~El~Q~r~e~q~L~a--------~RQELs~qvq~ltqeL~r~~~ 161 (246)
.-.|+.....+++.|.. .|.+|+.++..++..|.....
T Consensus 92 k~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ 139 (194)
T PF15619_consen 92 KDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEK 139 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 11244444444443322 377888777777776655443
No 45
>PHA02562 46 endonuclease subunit; Provisional
Probab=94.37 E-value=5.3 Score=38.67 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhh
Q 025912 166 MAAIKAEIETERQEIHKGRAAIE 188 (246)
Q Consensus 166 ip~l~aEid~lrqElqr~Raa~E 188 (246)
+-.|...++.++.++......+.
T Consensus 301 ~~~l~d~i~~l~~~l~~l~~~i~ 323 (562)
T PHA02562 301 ITKIKDKLKELQHSLEKLDTAID 323 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555544
No 46
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=94.30 E-value=6.4 Score=39.35 Aligned_cols=154 Identities=21% Similarity=0.325 Sum_probs=97.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchhhHHHHHH----HH
Q 025912 56 SDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELD----RV 131 (246)
Q Consensus 56 ~EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~lk~El~----Q~ 131 (246)
.|++.--.|-+-.-...-++++++..|++|+.++.....+++++ +--|.+...++|+++.++-+=.++|+ |+
T Consensus 109 ~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtr----l~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Ql 184 (499)
T COG4372 109 SELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTR----LKTLAEQRRQLEAQAQSLQASQKQLQASATQL 184 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666666666777889999999999999999999988765 56799999999999888766666665 44
Q ss_pred HHHHHHHHHH-------HHHHH---HHHHHHHHHHHHHhhhhhh----hHHHHHHHHHHHHHHHhhhhhhhhhcccccch
Q 025912 132 RADIEKLCVI-------KQEMI---KDLNEINGDLAKARDESKD----MAAIKAEIETERQEIHKGRAAIECEKKNRASN 197 (246)
Q Consensus 132 r~e~q~L~a~-------RQELs---~qvq~ltqeL~r~~~d~qq----ip~l~aEid~lrqElqr~Raa~EyEKK~~~e~ 197 (246)
.+++..|... -|+|. ..+|..++||++..+-.|| |.-..+-|+..-+++- +|.-. -.+.
T Consensus 185 k~~~~~L~~r~~~ieQ~~~~la~r~~a~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~ia-ar~e~------I~~r 257 (499)
T COG4372 185 KSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIA-ARAEQ------IRER 257 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHH------HHHH
Confidence 4444444321 11222 2467777777776666655 3344455555555442 11111 1122
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHH
Q 025912 198 HEQREIMEKNIISVAQQIERLQA 220 (246)
Q Consensus 198 ~Eq~qaMEkNlisMarEvEKLRa 220 (246)
-++.|..|.-..-+-+||+.|.+
T Consensus 258 e~~lq~lEt~q~~leqeva~le~ 280 (499)
T COG4372 258 ERQLQRLETAQARLEQEVAQLEA 280 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666667666644
No 47
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=94.15 E-value=1.1 Score=42.23 Aligned_cols=174 Identities=18% Similarity=0.271 Sum_probs=105.8
Q ss_pred hHHHHHHHHHhhHHHHH--------HHHHHHHHHHHHHHHHHHH-HHhhhhhhhhHHHHHHH-HHHHhhhhHHhh-----
Q 025912 54 QHSDIQSLLQDNQRLAA--------THVALKQELSLAEQELRHL-SSVAASVKAERDAEVRE-LYEKSLKLDAEL----- 118 (246)
Q Consensus 54 Q~~EiqrLl~dNqRLAa--------tHvaLrQeL~aaq~El~~l-~~~i~~i~aE~e~qiRe-L~ek~~KmEAel----- 118 (246)
-|.|+.+=+.|=+++-. ..=.|=+|--.|-.+++.+ ...+..|++=.-.+.+. -|+=.+||=-.|
T Consensus 71 sC~EL~~~I~egr~~~~~~E~et~~~nPpLF~EY~~a~~d~r~lm~~Qf~lvK~~aRl~ak~~WYeWR~kllegLk~~L~ 150 (312)
T smart00787 71 SCKELKKYISEGRDLFKEIEEETLINNPPLFKEYFSASPDVKLLMDKQFQLVKTFARLEAKKMWYEWRMKLLEGLKEGLD 150 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666555442 2222556666666666554 55555555544444433 355555543333
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHH-HHHHHHHHHHHHhhhhhhhhhcccccch
Q 025912 119 RVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAI-KAEIETERQEIHKGRAAIECEKKNRASN 197 (246)
Q Consensus 119 Ra~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l-~aEid~lrqElqr~Raa~EyEKK~~~e~ 197 (246)
+..+.|+.|...+..+.+.+....-+|....+.|..|+..++.-...+-.. ..|++.+|.+|...=..++.-++.-.+.
T Consensus 151 ~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~ 230 (312)
T smart00787 151 ENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEEL 230 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334778888888888888888888888888888888777655443332111 2345555555555555555555555666
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHhhHhh
Q 025912 198 HEQREIMEKNIISVAQQIERLQAELANAEK 227 (246)
Q Consensus 198 ~Eq~qaMEkNlisMarEvEKLRaElanaEk 227 (246)
-+|++..+..+=....+...++.+|+.|++
T Consensus 231 ~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 231 EEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777777777777777777766
No 48
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=94.10 E-value=0.92 Score=42.52 Aligned_cols=96 Identities=17% Similarity=0.352 Sum_probs=55.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccchhHHH
Q 025912 122 ESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQR 201 (246)
Q Consensus 122 e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~ 201 (246)
.....+..++..++++|.....+|..++..+.+|-..+..+...+-.-..+++....++.+-+..+..+. .+..+..
T Consensus 39 ~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l---~~~~~e~ 115 (314)
T PF04111_consen 39 SDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLEL---IEFQEER 115 (314)
T ss_dssp ---HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 3444555556666666666666666666666666665555544444444455555555566666665553 3444566
Q ss_pred HHHHHhHHHHHHHHHHHHH
Q 025912 202 EIMEKNIISVAQQIERLQA 220 (246)
Q Consensus 202 qaMEkNlisMarEvEKLRa 220 (246)
+.++..+..+-..+++||.
T Consensus 116 ~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 116 DSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 6777777777777777764
No 49
>PHA02562 46 endonuclease subunit; Provisional
Probab=94.07 E-value=6.1 Score=38.25 Aligned_cols=54 Identities=9% Similarity=0.211 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhh
Q 025912 134 DIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAI 187 (246)
Q Consensus 134 e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~ 187 (246)
.+..|...+.+|..++..+...+........+.-.+...+..++.++...|..+
T Consensus 300 ~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i 353 (562)
T PHA02562 300 RITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSL 353 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555444444444445555555555555555544
No 50
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=93.89 E-value=13 Score=41.35 Aligned_cols=32 Identities=25% Similarity=0.402 Sum_probs=14.1
Q ss_pred hHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHH
Q 025912 46 HLEDRIAIQHSDIQSLLQDNQRLAATHVALKQ 77 (246)
Q Consensus 46 ~LEe~La~Q~~EiqrLl~dNqRLAatHvaLrQ 77 (246)
-|+++|+.-..+|..+-..-..|.+..-.|.+
T Consensus 746 el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~ 777 (1353)
T TIGR02680 746 ELDARLAAVDDELAELARELRALGARQRALAD 777 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555554444443333333333333
No 51
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=93.86 E-value=8.8 Score=39.32 Aligned_cols=56 Identities=20% Similarity=0.286 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhhhcccccchhHHHHHHHHhHHHHH----HHHHHHHHH
Q 025912 166 MAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVA----QQIERLQAE 221 (246)
Q Consensus 166 ip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEkNlisMa----rEvEKLRaE 221 (246)
+--|++|+..|+.+|.++|...+-|--++.+.--+.|.+.+-|--|- .||+.+|.-
T Consensus 171 ~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~ 230 (546)
T KOG0977|consen 171 LKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRK 230 (546)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 44678899999999999999999999999999999999888887776 666666553
No 52
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=93.83 E-value=7.6 Score=38.52 Aligned_cols=149 Identities=19% Similarity=0.292 Sum_probs=83.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhc------hhhHHHHHHHHHHHHHH
Q 025912 64 DNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRV------IESMHAELDRVRADIEK 137 (246)
Q Consensus 64 dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa------~e~lk~El~Q~r~e~q~ 137 (246)
+..-+..-.--|+.++...+.|+.--+.-+..+-..+|.-|-.|=+++.. ..+.. .+.++.|...++.+++.
T Consensus 215 ~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~--~~~~~~~~~~el~~l~~E~~~~~ee~~~ 292 (511)
T PF09787_consen 215 ESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLE--EGFDSSTNSIELEELKQERDHLQEEIQL 292 (511)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccc--cccccccchhcchhhHHHHHHHHHHHHH
Confidence 33333344445555555566666655555555556666666666554443 12222 56788888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhh---------hHHH--HHHHHHHHHHHHhhhhhhhhhcccccchhHHHHHHHH
Q 025912 138 LCVIKQEMIKDLNEINGDLAKARDESKD---------MAAI--KAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEK 206 (246)
Q Consensus 138 L~a~RQELs~qvq~ltqeL~r~~~d~qq---------ip~l--~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEk 206 (246)
|...=+.|..+++.+..++.....-..+ .|.+ .+|+.-+.+|+.+.+...-- ...--+.+..+|
T Consensus 293 l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~~l~~~el~~~~ee~~~-----~~s~~~~k~~~k 367 (511)
T PF09787_consen 293 LERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQLEPELTTEAELRLYYQELYHYREELSR-----QKSPLQLKLKEK 367 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH-----hcChHHHHHHHH
Confidence 8777766777776666554442211111 1111 34555556666655533222 222334555555
Q ss_pred hHHHHHHHHHHHHHHHhh
Q 025912 207 NIISVAQQIERLQAELAN 224 (246)
Q Consensus 207 NlisMarEvEKLRaElan 224 (246)
-.|+.|||..+.+
T Consensus 368 -----e~E~q~lr~~l~~ 380 (511)
T PF09787_consen 368 -----ESEIQKLRNQLSA 380 (511)
T ss_pred -----HHHHHHHHHHHHH
Confidence 6799999998865
No 53
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=93.81 E-value=5.9 Score=40.49 Aligned_cols=78 Identities=19% Similarity=0.290 Sum_probs=46.7
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhc----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 84 QELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRV----IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKA 159 (246)
Q Consensus 84 ~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa----~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~ 159 (246)
.++...-..+..+++|- --+--++.+||.|+.- ..-++.+|.-+|++...=...|.++..++|.|.+||.=.
T Consensus 141 e~~~~~~~~l~~leAe~----~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~ 216 (546)
T KOG0977|consen 141 EKLDDYLSRLSELEAEI----NTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFL 216 (546)
T ss_pred HHHHHHhhhhhhhhhHH----HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33333344444444433 3355566677776432 244555555555555555678899999999999998876
Q ss_pred hhhhhh
Q 025912 160 RDESKD 165 (246)
Q Consensus 160 ~~d~qq 165 (246)
.....+
T Consensus 217 ~~~h~~ 222 (546)
T KOG0977|consen 217 KRIHKQ 222 (546)
T ss_pred HhccHH
Confidence 654443
No 54
>PF13514 AAA_27: AAA domain
Probab=93.72 E-value=12 Score=40.37 Aligned_cols=136 Identities=19% Similarity=0.270 Sum_probs=88.2
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH-----HHHHHHHHhhhhHHhhhch------
Q 025912 53 IQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDA-----EVRELYEKSLKLDAELRVI------ 121 (246)
Q Consensus 53 ~Q~~EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~e~-----qiReL~ek~~KmEAelRa~------ 121 (246)
.+..|+++=+.+-.--..+...|++++..+++++..+...+..++.+... .+..++.....++++|-+.
T Consensus 157 ~~l~e~~~~l~~~~~~~~~y~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~ler~~~~~p~~~~~~~l~~~l~~l~~~~~~ 236 (1111)
T PF13514_consen 157 KELKELERELREAEVRAAEYQELQQALEEAEEELEELRAELKELRAELRRLERLRRAWPLLAELQQLEAELAELGEVPDF 236 (1111)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCcCCC
Confidence 34555555556666667778888888888888888888888877776543 4455777777777777633
Q ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q 025912 122 -ESMHAELDRVRADIEKLCVIKQEMI-----------------------KDLNEINGDLAKARDESKDMAAIKAEIETER 177 (246)
Q Consensus 122 -e~lk~El~Q~r~e~q~L~a~RQELs-----------------------~qvq~ltqeL~r~~~d~qqip~l~aEid~lr 177 (246)
+.-...+.++..++..+......+. ..|..|...+.........+|.+..++..++
T Consensus 237 p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~ll~~~~~I~~L~~~~~~~~~~~~dl~~~~~e~~~~~ 316 (1111)
T PF13514_consen 237 PEDGAERLEQLEEELAEAQAQLERLQEELAQLEEELDALPVDEELLAHAAEIEALEEQRGEYRKARQDLPRLEAELAELE 316 (1111)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1223333333333333333333333 3344555555555666777899999999999
Q ss_pred HHHHhhhhhhh
Q 025912 178 QEIHKGRAAIE 188 (246)
Q Consensus 178 qElqr~Raa~E 188 (246)
.++..+-..+.
T Consensus 317 ~~~~~~~~~lg 327 (1111)
T PF13514_consen 317 AELRALLAQLG 327 (1111)
T ss_pred HHHHHHHHhcC
Confidence 99888877776
No 55
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=93.62 E-value=0.69 Score=39.99 Aligned_cols=93 Identities=28% Similarity=0.355 Sum_probs=23.9
Q ss_pred hHhHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhh----h
Q 025912 44 LHHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAEL----R 119 (246)
Q Consensus 44 ~~~LEe~La~Q~~EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAel----R 119 (246)
...+++++.....|+..+...|-.++..-+.+-.+|...+.++......|..++++... |-.++..++.+| +
T Consensus 69 ~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~----L~~~~~~l~~~l~ek~k 144 (194)
T PF08614_consen 69 ISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQ----LEEKIKDLEEELKEKNK 144 (194)
T ss_dssp ---------------------------------------------HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 44689999999999999999999988888888888888888887777777766655433 334444444443 3
Q ss_pred chhhHHHHHHHHHHHHHHHHH
Q 025912 120 VIESMHAELDRVRADIEKLCV 140 (246)
Q Consensus 120 a~e~lk~El~Q~r~e~q~L~a 140 (246)
+++.+++|+.-+..+.-.+..
T Consensus 145 ~~e~l~DE~~~L~l~~~~~e~ 165 (194)
T PF08614_consen 145 ANEILQDELQALQLQLNMLEE 165 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555544433333
No 56
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=93.52 E-value=6 Score=36.32 Aligned_cols=21 Identities=24% Similarity=0.207 Sum_probs=10.0
Q ss_pred HHHHHHhhHHHHHHHHHhhHH
Q 025912 47 LEDRIAIQHSDIQSLLQDNQR 67 (246)
Q Consensus 47 LEe~La~Q~~EiqrLl~dNqR 67 (246)
++.++..-..++.+|-.+..+
T Consensus 79 ~~~~l~~l~~~~~~l~a~~~~ 99 (423)
T TIGR01843 79 VEADAAELESQVLRLEAEVAR 99 (423)
T ss_pred hhhHHHHHHHHHHHHHHHHHH
Confidence 445555555555554444433
No 57
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=93.45 E-value=12 Score=39.68 Aligned_cols=179 Identities=18% Similarity=0.298 Sum_probs=106.4
Q ss_pred hHhHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchhh
Q 025912 44 LHHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIES 123 (246)
Q Consensus 44 ~~~LEe~La~Q~~EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~ 123 (246)
.+.++-.|.--..||..+-..+.-+...+...|+-+.+.+.+|.........+++|-|.=--.|=++-.-++.-=..++.
T Consensus 289 ~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~ 368 (775)
T PF10174_consen 289 MDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEK 368 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888899999999999999999999999999999999999999999998865433333333333322222333
Q ss_pred HHHHHHHHHHHH--------------HHHHHH----HHHHHHHHHHHHHHHHHH--hhhhhhhHHHHHHHHHHHHHHHhh
Q 025912 124 MHAELDRVRADI--------------EKLCVI----KQEMIKDLNEINGDLAKA--RDESKDMAAIKAEIETERQEIHKG 183 (246)
Q Consensus 124 lk~El~Q~r~e~--------------q~L~a~----RQELs~qvq~ltqeL~r~--~~d~qqip~l~aEid~lrqElqr~ 183 (246)
+..|...+.+|+ ..|..- ..-|..+-..+..+..|+ ++|....--+...||....|..+.
T Consensus 369 ~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~ 448 (775)
T PF10174_consen 369 LQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEALREKERL 448 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHH
Confidence 333333322222 222211 122223333344444443 355666666667777777777777
Q ss_pred hhhhhhhccccc--chhHHHHHHHHhHHHHHHHHHHHHHHHh
Q 025912 184 RAAIECEKKNRA--SNHEQREIMEKNIISVAQQIERLQAELA 223 (246)
Q Consensus 184 Raa~EyEKK~~~--e~~Eq~qaMEkNlisMarEvEKLRaEla 223 (246)
+..++-.. .+. +..|+...+.+-+--.-.+++.|..+|.
T Consensus 449 ~e~l~e~r-~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLs 489 (775)
T PF10174_consen 449 QERLEEQR-ERAEKERQEELETYQKELKELKAKLESLQKELS 489 (775)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 77765432 222 2345555555555555555555555553
No 58
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=93.39 E-value=2.2 Score=38.46 Aligned_cols=76 Identities=22% Similarity=0.363 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHhhhh----hhhHHHHHHHHHHHHHHHhhh----hhhhhhcccccchhHHHHHHHHhHHHHHHHHHHH
Q 025912 147 KDLNEINGDLAKARDES----KDMAAIKAEIETERQEIHKGR----AAIECEKKNRASNHEQREIMEKNIISVAQQIERL 218 (246)
Q Consensus 147 ~qvq~ltqeL~r~~~d~----qqip~l~aEid~lrqElqr~R----aa~EyEKK~~~e~~Eq~qaMEkNlisMarEvEKL 218 (246)
.++.....||++..++. .++..+.+|+-.|+.++..+. ..+-+- ..-+.--+...=...+-++-+|||.|
T Consensus 66 ~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~~~~~~~~~~l~--~~deak~~~~~~~~~~~~l~~e~erL 143 (202)
T PF06818_consen 66 LELEVCENELQRKKNEAELLREKLGQLEAELAELREELACAGRLKRQCQLLS--ESDEAKAQRQAGEDELGSLRREVERL 143 (202)
T ss_pred HhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhhccchhhhcccc--ccchhHHhhccccccchhHHHHHHHH
Confidence 34445555666666555 345556666666666666551 000000 11111122222244577899999999
Q ss_pred HHHHhh
Q 025912 219 QAELAN 224 (246)
Q Consensus 219 RaElan 224 (246)
|+||.-
T Consensus 144 ~aeL~~ 149 (202)
T PF06818_consen 144 RAELQR 149 (202)
T ss_pred HHHHHH
Confidence 999974
No 59
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=93.21 E-value=5.2 Score=45.93 Aligned_cols=168 Identities=22% Similarity=0.273 Sum_probs=112.7
Q ss_pred HHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchhhHHHHHH
Q 025912 50 RIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELD 129 (246)
Q Consensus 50 ~La~Q~~EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~lk~El~ 129 (246)
...+-..++.-+-.||-||-..+.-+-+++..++..|-....-- ..-+..+.+.-+++.+..-|=. |+.-=.
T Consensus 1161 Ekei~~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~~-q~~a~s~~e~~~i~~~v~~vNl-------l~EsN~ 1232 (1822)
T KOG4674|consen 1161 EKEIAETKLDTLKRENARLKQQVASLNRTIDDLQRSLTAERASS-QKSAVSDDEHKEILEKVEEVNL-------LRESNK 1232 (1822)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccchhhhhhhhHHHHHHHHHHH-------HHHhHH
Confidence 33444455666778888888888888888777777665542211 1123344455555555444432 333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccchhHHHHHHHHh-H
Q 025912 130 RVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKN-I 208 (246)
Q Consensus 130 Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEkN-l 208 (246)
.+|.+-..+..-.|||..+|..+..|+..++.++.+ ++++++....|+-.+|.-.+-=|+-+-+.+++-+--.+| |
T Consensus 1233 ~LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~e---l~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~ 1309 (1822)
T KOG4674|consen 1233 VLREENEANLEKIQELRDKIEKLNFELAPLQNELKE---LKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDY 1309 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHH
Confidence 555566666666699999999999999999988764 556666666666666666666677777888886666666 5
Q ss_pred HHHHHHHHHHHHHHhhHhhh
Q 025912 209 ISVAQQIERLQAELANAEKR 228 (246)
Q Consensus 209 isMarEvEKLRaElanaEkR 228 (246)
=....||.+|-.||.+.++-
T Consensus 1310 ~kL~~ei~~Lk~el~~ke~~ 1329 (1822)
T KOG4674|consen 1310 EKLKSEISRLKEELEEKENL 1329 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56777999999999877653
No 60
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=92.93 E-value=14 Score=38.75 Aligned_cols=180 Identities=22% Similarity=0.297 Sum_probs=99.0
Q ss_pred HhHHHHHHhhHHHHHHHHHhhHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh--hHHHHHHHHHHHh----
Q 025912 45 HHLEDRIAIQHSDIQSLLQDNQR-------LAATHVALKQELSLAEQELRHLSSVAASVKA--ERDAEVRELYEKS---- 111 (246)
Q Consensus 45 ~~LEe~La~Q~~EiqrLl~dNqR-------LAatHvaLrQeL~aaq~El~~l~~~i~~i~a--E~e~qiReL~ek~---- 111 (246)
..||..|..-..||+..-.-=+- |-.+.-.||.||...++|-..|..-+..+.. ++|.+-...+||-
T Consensus 421 ~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE 500 (697)
T PF09726_consen 421 SRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEE 500 (697)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45676666666666543221111 2223456777777777776666444433322 2333333444443
Q ss_pred ----hhhHHhhhch--------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Q 025912 112 ----LKLDAELRVI--------------------------ESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKAR- 160 (246)
Q Consensus 112 ----~KmEAelRa~--------------------------e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~- 160 (246)
..+|+.|.+- |..|.-..++-.|+++|...-+..-.+++.+.+|++.++
T Consensus 501 ~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~ 580 (697)
T PF09726_consen 501 RRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRK 580 (697)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344433222 224444444444444444444444444444444443221
Q ss_pred --hh-hhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccchh-------HHHHHHHHhHHHHHHHHHHHHHHHhh
Q 025912 161 --DE-SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNH-------EQREIMEKNIISVAQQIERLQAELAN 224 (246)
Q Consensus 161 --~d-~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~-------Eq~qaMEkNlisMarEvEKLRaElan 224 (246)
.+ .+-+-+|...|-.||..-+|+=..+=.|-+-+.|+. -|+..-+.-+..==+||+-|.+.|+.
T Consensus 581 ~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~ 654 (697)
T PF09726_consen 581 YEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQ 654 (697)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 334667777777777777777777777776666654 46667777788888999999998844
No 61
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=92.85 E-value=5.5 Score=41.99 Aligned_cols=135 Identities=21% Similarity=0.324 Sum_probs=75.0
Q ss_pred HHHhhHHHHHHHHHhhHHHHHHHHHHHHH--HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHh-hhchhhHHH
Q 025912 50 RIAIQHSDIQSLLQDNQRLAATHVALKQE--LSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAE-LRVIESMHA 126 (246)
Q Consensus 50 ~La~Q~~EiqrLl~dNqRLAatHvaLrQe--L~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAe-lRa~e~lk~ 126 (246)
=|.-|-.||+||=.+=+-|-.+- |+|- |.+--.||..|..+-..-+||.| ..|.- .++-|.- .+.-|..+.
T Consensus 67 lis~qlqE~rrle~e~~~lre~s--l~qkmrLe~qa~Ele~l~~ae~agraEae-~Lraa---la~ae~~R~~lEE~~q~ 140 (739)
T PF07111_consen 67 LISRQLQELRRLEEEVRALRETS--LQQKMRLEAQAEELEALARAEKAGRAEAE-ELRAA---LAGAEVVRKNLEEGSQR 140 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHhhhhhHH-HHHHH---HhhHHHHHHhhHHHHHH
Confidence 35666688888877766555542 2222 33333367766555444444432 12211 1111110 111144455
Q ss_pred HHHHHHH----HHHHHHHHHH----HHHHHHHHHHHHHHHHh----hhhhhhHHHHHHHHHHHHHHHhhhhhhhhh
Q 025912 127 ELDRVRA----DIEKLCVIKQ----EMIKDLNEINGDLAKAR----DESKDMAAIKAEIETERQEIHKGRAAIECE 190 (246)
Q Consensus 127 El~Q~r~----e~q~L~a~RQ----ELs~qvq~ltqeL~r~~----~d~qqip~l~aEid~lrqElqr~Raa~EyE 190 (246)
||..++. ++..|+.+=| .|+.+++.|.++|.-.. .+.+.+.....|.|.|++++-.....||-.
T Consensus 141 ELee~q~~Hqeql~~Lt~aHq~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q 216 (739)
T PF07111_consen 141 ELEEAQRLHQEQLSSLTQAHQEALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQ 216 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 5544432 2334444333 47778888888765433 467778888889999999998888777753
No 62
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=92.84 E-value=4.7 Score=38.29 Aligned_cols=101 Identities=18% Similarity=0.265 Sum_probs=72.1
Q ss_pred HHHHHHhhhhHHhhhchh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----hhhHHHHHHHHHHH
Q 025912 105 RELYEKSLKLDAELRVIE---SMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDES----KDMAAIKAEIETER 177 (246)
Q Consensus 105 ReL~ek~~KmEAelRa~e---~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~----qqip~l~aEid~lr 177 (246)
+.|++++..|+-++.... ....++.-+.++|+.|...+.++..+|+.+.++.+..+-+. +.+..++.+.|.++
T Consensus 134 ~~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~h 213 (294)
T COG1340 134 RELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELH 213 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888877765 34555666667888888887777777777777776655443 44778899999999
Q ss_pred HHHHhhhhhhhhhcccccchhHHHHHHH
Q 025912 178 QEIHKGRAAIECEKKNRASNHEQREIME 205 (246)
Q Consensus 178 qElqr~Raa~EyEKK~~~e~~Eq~qaME 205 (246)
.++...+..++-..........-....+
T Consensus 214 e~~ve~~~~~~e~~ee~~~~~~elre~~ 241 (294)
T COG1340 214 EEFVELSKKIDELHEEFRNLQNELRELE 241 (294)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 9998888888776665555444444433
No 63
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=92.64 E-value=13 Score=37.92 Aligned_cols=25 Identities=24% Similarity=0.169 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 66 QRLAATHVALKQELSLAEQELRHLS 90 (246)
Q Consensus 66 qRLAatHvaLrQeL~aaq~El~~l~ 90 (246)
+-|...-..|+++|..++.++....
T Consensus 197 ~~L~~ql~~l~~~l~~aE~~l~~fk 221 (754)
T TIGR01005 197 DFLAPEIADLSKQSRDAEAEVAAYR 221 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555556666666666555553
No 64
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=92.64 E-value=1.7 Score=32.75 Aligned_cols=67 Identities=25% Similarity=0.344 Sum_probs=44.1
Q ss_pred hhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhh
Q 025912 113 KLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRA 185 (246)
Q Consensus 113 KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Ra 185 (246)
+||++ +..|+..+.++...+......-..|+..=.+.-.-|..+..+ +-.|++|++.|++|+.+.|.
T Consensus 2 ~Lea~---~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e---~~~Lk~E~e~L~~el~~~r~ 68 (69)
T PF14197_consen 2 KLEAE---IATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEE---NNKLKEENEALRKELEELRA 68 (69)
T ss_pred hHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhc
Confidence 45666 455677777776666666655555555555555555555444 34578999999999988774
No 65
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=92.56 E-value=10 Score=36.30 Aligned_cols=39 Identities=33% Similarity=0.453 Sum_probs=32.7
Q ss_pred HHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 025912 56 SDI-QSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAA 94 (246)
Q Consensus 56 ~Ei-qrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~ 94 (246)
+.| |.|+..|+-|...--.|-++|.++.+.|..|++-+.
T Consensus 82 A~iGqsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~ 121 (306)
T PF04849_consen 82 ARIGQSLLEQNQDLSERNEALEEQLGAALEQVEQLRHELS 121 (306)
T ss_pred HHHhHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446 899999999998889999999999888888866543
No 66
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=92.54 E-value=18 Score=40.51 Aligned_cols=185 Identities=18% Similarity=0.255 Sum_probs=96.2
Q ss_pred CCchHhHHHHHHhhHHHHHHHHHhhHHHH---HHHHHHHHHHHHH---HHHHHH-HHHhhhhhhhhHHHHHHHHHHHhhh
Q 025912 41 SPSLHHLEDRIAIQHSDIQSLLQDNQRLA---ATHVALKQELSLA---EQELRH-LSSVAASVKAERDAEVRELYEKSLK 113 (246)
Q Consensus 41 ~p~~~~LEe~La~Q~~EiqrLl~dNqRLA---atHvaLrQeL~aa---q~El~~-l~~~i~~i~aE~e~qiReL~ek~~K 113 (246)
+....+||+-+.--..+++.|...++.++ ..+-.|.+.+.-- ..||++ -.+..-.=..+.+.++.+.-++..+
T Consensus 433 ~~~~~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~ 512 (1317)
T KOG0612|consen 433 HKTLQILEQSLVNEMQEKEKLDEKCQAVAELEEMDKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRK 512 (1317)
T ss_pred ccchhhcccchhhHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 34445788888888888999999999888 5555666444443 333443 1112222233455566666666666
Q ss_pred hHHhhhch----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHhhhhhhhHH
Q 025912 114 LDAELRVI----ESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLA---------------------KARDESKDMAA 168 (246)
Q Consensus 114 mEAelRa~----e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~---------------------r~~~d~qqip~ 168 (246)
+++++|.. +.+++...+++-..+++.+.|++|-..-..+.-|.. ....-...++.
T Consensus 513 l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e~~~~~~d~l~~ 592 (1317)
T KOG0612|consen 513 LEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELEENRDLEDKLSL 592 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhhccccHHHHHHH
Confidence 77666654 344555555555566666666666544333332211 11111222333
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhH
Q 025912 169 IKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANA 225 (246)
Q Consensus 169 l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEkNlisMarEvEKLRaElana 225 (246)
+...-..+-+|....|+..|-++....+..|-....+.-+-+.-...+-+-.++.++
T Consensus 593 le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~ 649 (1317)
T KOG0612|consen 593 LEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKV 649 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHH
Confidence 333334444444555555555555555555554444444444444444444444333
No 67
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=92.43 E-value=8.7 Score=35.28 Aligned_cols=33 Identities=18% Similarity=0.218 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 025912 67 RLAATHVALKQELSLAEQELRHLSSVAASVKAE 99 (246)
Q Consensus 67 RLAatHvaLrQeL~aaq~El~~l~~~i~~i~aE 99 (246)
.+.+....|..++...+.++..+...+..++++
T Consensus 141 ~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~ 173 (423)
T TIGR01843 141 TLRAQLELILAQIKQLEAELAGLQAQLQALRQQ 173 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555544444433
No 68
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=92.43 E-value=13 Score=38.28 Aligned_cols=149 Identities=15% Similarity=0.232 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH---HHHHHhhhhHHhhhchhh------HHHHHHHHHHHHHHHHHHHH
Q 025912 73 VALKQELSLAEQELRHLSSVAASVKAERDAEVR---ELYEKSLKLDAELRVIES------MHAELDRVRADIEKLCVIKQ 143 (246)
Q Consensus 73 vaLrQeL~aaq~El~~l~~~i~~i~aE~e~qiR---eL~ek~~KmEAelRa~e~------lk~El~Q~r~e~q~L~a~RQ 143 (246)
..|+.|-+..++.++.|+.-+..++.|++..++ +|=..+.+|...+....+ ....-.++..+++.|.....
T Consensus 18 ~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE 97 (617)
T PF15070_consen 18 QQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELE 97 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHH
Confidence 457888888889999999999999988886544 444455555554442210 11112456666666666666
Q ss_pred HHHHHHHHHHHHHH---HHh-hhhhhhHHHHHHHHHH----------HHHHHhhhhhhhhhcccccchhHHHHHHHHhHH
Q 025912 144 EMIKDLNEINGDLA---KAR-DESKDMAAIKAEIETE----------RQEIHKGRAAIECEKKNRASNHEQREIMEKNII 209 (246)
Q Consensus 144 ELs~qvq~ltqeL~---r~~-~d~qqip~l~aEid~l----------rqElqr~Raa~EyEKK~~~e~~Eq~qaMEkNli 209 (246)
.|.++++....+-. ++. .--.+|-.+.-.++.+ -..++.-++++----.-|-++.+|+..|+..||
T Consensus 98 ~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv 177 (617)
T PF15070_consen 98 SLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFV 177 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 66666666543332 221 1222333433333333 333334444444444667889999999999999
Q ss_pred HHHHH----HHHHHHH
Q 025912 210 SVAQQ----IERLQAE 221 (246)
Q Consensus 210 sMarE----vEKLRaE 221 (246)
.|..+ ..+|-+|
T Consensus 178 ~ltne~~elt~~lq~E 193 (617)
T PF15070_consen 178 KLTNENMELTSALQSE 193 (617)
T ss_pred HHHHhhhHhhHHHHHH
Confidence 99887 4555544
No 69
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=92.40 E-value=5.9 Score=33.31 Aligned_cols=128 Identities=19% Similarity=0.255 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhh---hhhHHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 74 ALKQELSLAEQELRHLSSVAASV---KAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLN 150 (246)
Q Consensus 74 aLrQeL~aaq~El~~l~~~i~~i---~aE~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq 150 (246)
+||-|...+..=...+..-+..+ ....|.+|..|-.|+..+|.+|-.++.==.++...-.+..+....=.-|..+|+
T Consensus 4 ~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq 83 (143)
T PF12718_consen 4 ALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQ 83 (143)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHH
Confidence 34444444444333333333222 235788999999999999999655544334444444444444444446999999
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccchhHHH
Q 025912 151 EINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQR 201 (246)
Q Consensus 151 ~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~ 201 (246)
.|-.+|.++...+...-.-..+.|.-=.++-|-..++|.+....-..++.+
T Consensus 84 ~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel 134 (143)
T PF12718_consen 84 LLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEEL 134 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999999999999888888888888888888888888765554444443
No 70
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=92.40 E-value=10 Score=36.10 Aligned_cols=134 Identities=18% Similarity=0.309 Sum_probs=84.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHH
Q 025912 64 DNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQ 143 (246)
Q Consensus 64 dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQ 143 (246)
+-+-.-.-|..++|-...+++||.-...--+.+.+|-|.|+-.+-.+..+++++ +--|+-|+.-.. .++...|-
T Consensus 14 E~~ywk~l~~~ykq~f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~---nqrl~~E~e~~K---ek~e~q~~ 87 (333)
T KOG1853|consen 14 EDQYWKLLHHEYKQHFLQMREELNEFQEGSREIEAELESQLDQLETRNRDLETR---NQRLTTEQERNK---EKQEDQRV 87 (333)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH---HHHHHHHH
Confidence 334445568899999999999999999999999999999999988888888887 334444443222 24444444
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccchhHHH--HHHHHh
Q 025912 144 EMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQR--EIMEKN 207 (246)
Q Consensus 144 ELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~--qaMEkN 207 (246)
+.-.++-.|..||...++-..|+-.-.-|++.----|-++..|-.|- .+-+||. |++|+|
T Consensus 88 q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~s----leDfeqrLnqAIErn 149 (333)
T KOG1853|consen 88 QFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYS----LEDFEQRLNQAIERN 149 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhh----HHHHHHHHHHHHHHH
Confidence 45555556666665555555554444444444444444444443331 2334443 677777
No 71
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=92.29 E-value=4.4 Score=36.89 Aligned_cols=55 Identities=22% Similarity=0.305 Sum_probs=32.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Q 025912 122 ESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQE 179 (246)
Q Consensus 122 e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqE 179 (246)
...-.||.|++.||..|...=+.+..+-........+... .+--|+.+||.+|.|
T Consensus 49 ~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~e---ey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 49 MAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYE---EYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 3444567777777777666555555544444444444443 234466777777777
No 72
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=92.22 E-value=27 Score=40.58 Aligned_cols=179 Identities=17% Similarity=0.273 Sum_probs=86.6
Q ss_pred hHHHHHHhhHHHHHHHHHhhHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhh
Q 025912 46 HLEDRIAIQHSDIQSLLQDNQRLAATHVA-------LKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAEL 118 (246)
Q Consensus 46 ~LEe~La~Q~~EiqrLl~dNqRLAatHva-------LrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAel 118 (246)
.|++-|..-.+|+..|..-|+-|-.+.-. +.+||.++..-+.++.+-+..++.|+++-.. .+..++ .|+
T Consensus 693 ~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~--t~~rL~--~e~ 768 (1822)
T KOG4674|consen 693 NLEKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKE--TEERLS--QEL 768 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHH--HHH
Confidence 34444445555555555555555444332 3334444545555555555555555543221 111111 111
Q ss_pred hchhhHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHhhhhhh-hHHHHHHHHHHHHHHHhhhhhhhh
Q 025912 119 RVIESMHAELDRVRADIEK--------LCVIKQEMIKDLNEINGDLAKARDESKD-MAAIKAEIETERQEIHKGRAAIEC 189 (246)
Q Consensus 119 Ra~e~lk~El~Q~r~e~q~--------L~a~RQELs~qvq~ltqeL~r~~~d~qq-ip~l~aEid~lrqElqr~Raa~Ey 189 (246)
-+..+-+..|+......|. ..+.|+.+..++..|..+|++++.+.+. +-.++.=...+-.-+--++.-++-
T Consensus 769 ~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~ 848 (1822)
T KOG4674|consen 769 EKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDE 848 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 1122222222222222221 1244555556666666666666665544 333444444444555556666666
Q ss_pred hcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhHhhh
Q 025912 190 EKKNRASNHEQREIMEKNIISVAQQIERLQAELANAEKR 228 (246)
Q Consensus 190 EKK~~~e~~Eq~qaMEkNlisMarEvEKLRaElanaEkR 228 (246)
+++.+...++.....++|+-.|-.++.-|-..|...+-|
T Consensus 849 ~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~ 887 (1822)
T KOG4674|consen 849 LESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQ 887 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 666666666666666666666666666665555554444
No 73
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=92.22 E-value=3.6 Score=34.07 Aligned_cols=70 Identities=19% Similarity=0.381 Sum_probs=58.6
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhhh
Q 025912 119 RVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIE 188 (246)
Q Consensus 119 Ra~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~E 188 (246)
.-++.|.+.+.+.-+|+..|...-.-|..+=..+++||.++...+..+-+...+++.|+.++..+..-++
T Consensus 16 ~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~ 85 (120)
T PF12325_consen 16 QLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQ 85 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888889999998888888888888888899999999988888888888888888888887665443
No 74
>PRK09039 hypothetical protein; Validated
Probab=92.20 E-value=11 Score=35.85 Aligned_cols=16 Identities=25% Similarity=0.337 Sum_probs=10.2
Q ss_pred hHHHHHHhhHHHHHHH
Q 025912 46 HLEDRIAIQHSDIQSL 61 (246)
Q Consensus 46 ~LEe~La~Q~~EiqrL 61 (246)
.|.+.|..+..|+.+|
T Consensus 43 fLs~~i~~~~~eL~~L 58 (343)
T PRK09039 43 FLSREISGKDSALDRL 58 (343)
T ss_pred HHHHHHhhHHHHHHHH
Confidence 4666666666666665
No 75
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=92.15 E-value=14 Score=36.87 Aligned_cols=44 Identities=20% Similarity=0.157 Sum_probs=19.7
Q ss_pred HHHHHhhhhhhhhhcccccchhHHHHHHHHhHHHHHHHHHHHHHHHh
Q 025912 177 RQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELA 223 (246)
Q Consensus 177 rqElqr~Raa~EyEKK~~~e~~Eq~qaMEkNlisMarEvEKLRaEla 223 (246)
++|-+...+.++-+..+.-..++.++. |=-++..+|.+++++.|
T Consensus 205 ~~E~kk~~~~l~~~l~~~q~~l~eL~~---~~~~L~~~Ias~e~~aA 248 (420)
T COG4942 205 LEERKKTLAQLNSELSADQKKLEELRA---NESRLKNEIASAEAAAA 248 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333 33345566666665555
No 76
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=91.98 E-value=12 Score=35.90 Aligned_cols=72 Identities=21% Similarity=0.229 Sum_probs=35.2
Q ss_pred CCCCchHhHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh----hhHHHHHHHHHHHhhhh
Q 025912 39 QHSPSLHHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVK----AERDAEVRELYEKSLKL 114 (246)
Q Consensus 39 p~~p~~~~LEe~La~Q~~EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~i~----aE~e~qiReL~ek~~Km 114 (246)
|++++++-|-.+++....+ |.-|=..--.+|..-...+.|+..|....-.+. .|.|--...|+-|+..+
T Consensus 17 ~S~~t~~~l~~~~~sL~qe-------n~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l 89 (310)
T PF09755_consen 17 SSSATREQLRKRIESLQQE-------NRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQL 89 (310)
T ss_pred CCCCchHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666655554 333333333444444555555555544433333 33444445555555444
Q ss_pred HHh
Q 025912 115 DAE 117 (246)
Q Consensus 115 EAe 117 (246)
..|
T Consensus 90 ~ke 92 (310)
T PF09755_consen 90 KKE 92 (310)
T ss_pred HHH
Confidence 444
No 77
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=91.88 E-value=10 Score=41.23 Aligned_cols=96 Identities=18% Similarity=0.208 Sum_probs=71.5
Q ss_pred HHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH----H----------HHHHHhhhhhhhhHHHHHHHHHHHhhhhH
Q 025912 50 RIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQE----L----------RHLSSVAASVKAERDAEVRELYEKSLKLD 115 (246)
Q Consensus 50 ~La~Q~~EiqrLl~dNqRLAatHvaLrQeL~aaq~E----l----------~~l~~~i~~i~aE~e~qiReL~ek~~KmE 115 (246)
++..|..+||--|-+-+|=|..---+++||.--.++ + ..+.+-+-.+++|.+.||-++--++..+|
T Consensus 327 kltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e 406 (1265)
T KOG0976|consen 327 KLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLE 406 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 678888888888888888777777777766532221 2 22233456678899999999999999999
Q ss_pred HhhhchhhHHHHHHHHHHHHHHHHHHHHHH
Q 025912 116 AELRVIESMHAELDRVRADIEKLCVIKQEM 145 (246)
Q Consensus 116 AelRa~e~lk~El~Q~r~e~q~L~a~RQEL 145 (246)
.=-+.-|++|.||+.+---+..+.+.+-++
T Consensus 407 ~~~~dhe~~kneL~~a~ekld~mgthl~ma 436 (1265)
T KOG0976|consen 407 QGKKDHEAAKNELQEALEKLDLMGTHLSMA 436 (1265)
T ss_pred hccchhHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 988888999999988877666666555443
No 78
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=91.62 E-value=12 Score=35.28 Aligned_cols=44 Identities=9% Similarity=0.218 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhh
Q 025912 144 EMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAI 187 (246)
Q Consensus 144 ELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~ 187 (246)
.+..++..+...+...+.+...+|....++..|+.|+.-.|..|
T Consensus 315 ~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~L~r~~~~~~~~y 358 (444)
T TIGR03017 315 ILKQREAELREALENQKAKVLELNRQRDEMSVLQRDVENAQRAY 358 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666777777777777777666665544
No 79
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=91.60 E-value=6.9 Score=34.37 Aligned_cols=52 Identities=15% Similarity=0.339 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhhh
Q 025912 134 DIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIE 188 (246)
Q Consensus 134 e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~E 188 (246)
.++.+.....++..++..+...+.+.+. ++-..+..++.+++.+...|..+.
T Consensus 57 ~~~~~~~~~~~~~~r~~~l~~~i~~~~~---~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 57 EIQQLKREIEELRERLERLRERIERLRK---RIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444433332 244456666666666666666655
No 80
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.59 E-value=27 Score=39.11 Aligned_cols=175 Identities=14% Similarity=0.255 Sum_probs=93.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHH
Q 025912 57 DIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIE 136 (246)
Q Consensus 57 EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q 136 (246)
|+.....++++....+ .-|+...+..+......+.+++.+=+...-.+.+++.++|.+ ..+....+.+++++++
T Consensus 430 e~e~~pe~~~~~i~~~---~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~eke---l~~~~~~~n~~~~e~~ 503 (1293)
T KOG0996|consen 430 ELEKAPEKARIEIQKC---QTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKE---LMPLLKQVNEARSELD 503 (1293)
T ss_pred HHHhCchhhHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 4444444555444333 234444444444445555555555555555566666666666 3455555555555555
Q ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHhhhh----hhhHHHHHHHHHHHHHHHhhhhhhhhhcccccchhHHHHHHH
Q 025912 137 KLCVIKQEM-------IKDLNEINGDLAKARDES----KDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIME 205 (246)
Q Consensus 137 ~L~a~RQEL-------s~qvq~ltqeL~r~~~d~----qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaME 205 (246)
-..+.-..| ..+|..+..-|.....+. --+..++.+|+.+.+|+..+..-++-= ..-.+.|-
T Consensus 504 vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~-------~~e~~~~~ 576 (1293)
T KOG0996|consen 504 VAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKL-------RKEERNLK 576 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHH-------HHHHHHHH
Confidence 544444444 444444444444432222 225566666666666665555433321 22234455
Q ss_pred HhHHHHHHHHHHHHHHHhhHhhhHhHHHhhh----hc-CCCCCC
Q 025912 206 KNIISVAQQIERLQAELANAEKRARAAAAAA----AV-NPSIYS 244 (246)
Q Consensus 206 kNlisMarEvEKLRaElanaEkRa~a~~aaa----a~-np~~~~ 244 (246)
+++-..-.+|+-++.-+.....|.....+-- +| -||.|.
T Consensus 577 ~~~~~~rqrveE~ks~~~~~~s~~kVl~al~r~kesG~i~Gf~G 620 (1293)
T KOG0996|consen 577 SQLNKLRQRVEEAKSSLSSSRSRNKVLDALMRLKESGRIPGFYG 620 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCCCCcccc
Confidence 5666677788888887777666666554222 34 688774
No 81
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=91.38 E-value=25 Score=38.46 Aligned_cols=33 Identities=18% Similarity=0.263 Sum_probs=15.1
Q ss_pred HHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHH
Q 025912 47 LEDRIAIQHSDIQSLLQDNQRLAATHVALKQEL 79 (246)
Q Consensus 47 LEe~La~Q~~EiqrLl~dNqRLAatHvaLrQeL 79 (246)
+.+++.....++.-|....+-+-+.+-.+++.|
T Consensus 357 ~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l 389 (1201)
T PF12128_consen 357 WRNELENLQEQLDLLTSKHQDIESKYNKLKQKL 389 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444
No 82
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=91.21 E-value=13 Score=34.65 Aligned_cols=30 Identities=20% Similarity=0.123 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Q 025912 71 THVALKQELSLAEQELRHLSSVAASVKAER 100 (246)
Q Consensus 71 tHvaLrQeL~aaq~El~~l~~~i~~i~aE~ 100 (246)
+-.-|.+++..++++|......+.+.+.++
T Consensus 171 a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~ 200 (362)
T TIGR01010 171 TIAFAENEVKEAEQRLNATKAELLKYQIKN 200 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344566666666666666655555555544
No 83
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.08 E-value=6.6 Score=40.60 Aligned_cols=119 Identities=24% Similarity=0.337 Sum_probs=75.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-----hhhHHHHHHHHH-----HHhhhhHHhhhchhhH
Q 025912 55 HSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASV-----KAERDAEVRELY-----EKSLKLDAELRVIESM 124 (246)
Q Consensus 55 ~~EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~i-----~aE~e~qiReL~-----ek~~KmEAelRa~e~l 124 (246)
..||...-.||++|+.-.-+|+.++..+..-+--+..+..++ +-+++.-.+++. +++.|||++|.-....
T Consensus 330 ~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~ 409 (654)
T KOG4809|consen 330 LEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNI 409 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 468999999999999999999998887766555554444433 445566666654 7899999998654333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q 025912 125 HAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETER 177 (246)
Q Consensus 125 k~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lr 177 (246)
-.| ++++ ......++.|-+..--..+++.++++++..+=.+-+|.++++
T Consensus 410 ~dd---ar~~-pe~~d~i~~le~e~~~y~de~~kaqaevdrlLeilkeveneK 458 (654)
T KOG4809|consen 410 EDD---ARMN-PEFADQIKQLEKEASYYRDECGKAQAEVDRLLEILKEVENEK 458 (654)
T ss_pred hHh---hhcC-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 222 2222 123444555555555555666666666666655655555544
No 84
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=90.98 E-value=19 Score=36.39 Aligned_cols=119 Identities=22% Similarity=0.208 Sum_probs=69.0
Q ss_pred hhHHHHHHHHHHHhhhhHHh--hhch--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----------
Q 025912 98 AERDAEVRELYEKSLKLDAE--LRVI--ESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE----------- 162 (246)
Q Consensus 98 aE~e~qiReL~ek~~KmEAe--lRa~--e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d----------- 162 (246)
-|.|-++-.|+.|+.|+|++ ++.. +.||.|..|+- +..-||=-+=|..|-+-+.++..|
T Consensus 154 qeqef~vnKlm~ki~Klen~t~~kq~~leQLRre~V~le------ntlEQEqEalvN~LwKrmdkLe~ekr~Lq~KlDqp 227 (552)
T KOG2129|consen 154 QEQEFFVNKLMNKIRKLENKTLLKQNTLEQLRREAVQLE------NTLEQEQEALVNSLWKRMDKLEQEKRYLQKKLDQP 227 (552)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 47788899999999999987 2333 44454444433 233344333333333333322222
Q ss_pred ---------hhhh--------HHHHHHHHHHHHHHHhhhhhhhhhcccccchhHHHHHHHHhHHH-HHHHHHHHHHHH
Q 025912 163 ---------SKDM--------AAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIIS-VAQQIERLQAEL 222 (246)
Q Consensus 163 ---------~qqi--------p~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEkNlis-MarEvEKLRaEl 222 (246)
...| .+++.=||.|+-|+-|+|+-+--=.|-+.+.+-|..+=|+.+-. -+|+-+||--|+
T Consensus 228 vs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~rlQrkL~~e~ 305 (552)
T KOG2129|consen 228 VSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHREENERLQRKLINEL 305 (552)
T ss_pred ccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 2222 24677788889999998888777667777766666665555322 344444444444
No 85
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=90.81 E-value=30 Score=38.23 Aligned_cols=56 Identities=9% Similarity=0.301 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Q 025912 122 ESMHAELDRVRADI-EKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEI 180 (246)
Q Consensus 122 e~lk~El~Q~r~e~-q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqEl 180 (246)
+.+++.+..++.+. +.+...+-+...+...|.++..++.. ++..|+.|++.++.++
T Consensus 375 d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~---~~~~L~~e~~~~~~~~ 431 (1074)
T KOG0250|consen 375 DRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEE---QINSLREELNEVKEKA 431 (1074)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 33334444444444 55555555555555555555555554 4444555554444433
No 86
>PRK11546 zraP zinc resistance protein; Provisional
Probab=90.74 E-value=0.83 Score=39.14 Aligned_cols=52 Identities=21% Similarity=0.327 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhhh
Q 025912 137 KLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIE 188 (246)
Q Consensus 137 ~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~E 188 (246)
+-...||+|.++=..|...++....|-+.|-+|..||..||+.|.-.|..|+
T Consensus 62 ~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~ 113 (143)
T PRK11546 62 QTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVKRD 113 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567777777777778888999999999999999999999998887554
No 87
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=90.67 E-value=0.074 Score=54.19 Aligned_cols=157 Identities=22% Similarity=0.343 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh---HHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHH--
Q 025912 68 LAATHVALKQELSLAEQELRHLSSVAASVKAE---RDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIK-- 142 (246)
Q Consensus 68 LAatHvaLrQeL~aaq~El~~l~~~i~~i~aE---~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~R-- 142 (246)
++..+..||..+...++|+.++.....+.+.+ .+.++.+|-.++.-|-++.+....+|+|+.-+|..+.++...-
T Consensus 237 ~~~~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ 316 (713)
T PF05622_consen 237 LSVELADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLENE 316 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 33445667777778888888777666666543 3456777777777788888888899999888887665543321
Q ss_pred -----------HHHHHHHHHHHH-------HHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccchhHHHHHH
Q 025912 143 -----------QEMIKDLNEING-------DLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIM 204 (246)
Q Consensus 143 -----------QELs~qvq~ltq-------eL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaM 204 (246)
.+|..+|..|.. -...+-.+.+..++++..++.+++++..+-....-+++-.-........+
T Consensus 317 ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L 396 (713)
T PF05622_consen 317 VEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQL 396 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123333333333 33345566677888888899988888888777777766555555566666
Q ss_pred HHhHHHHHHHHHHHHHHHhh
Q 025912 205 EKNIISVAQQIERLQAELAN 224 (246)
Q Consensus 205 EkNlisMarEvEKLRaElan 224 (246)
+.-+-++.+|-+.|..|..+
T Consensus 397 ~ek~~~l~~eke~l~~e~~~ 416 (713)
T PF05622_consen 397 EEKLEALEEEKERLQEERDS 416 (713)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666677777777665543
No 88
>PRK11519 tyrosine kinase; Provisional
Probab=90.34 E-value=13 Score=38.21 Aligned_cols=109 Identities=15% Similarity=0.276 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH-----HHHHHHHHHHhhhhHHhhhchhhHHHHHHHH----HHHHHHHHH
Q 025912 70 ATHVALKQELSLAEQELRHLSSVAASVKAER-----DAEVRELYEKSLKLDAELRVIESMHAELDRV----RADIEKLCV 140 (246)
Q Consensus 70 atHvaLrQeL~aaq~El~~l~~~i~~i~aE~-----e~qiReL~ek~~KmEAelRa~e~lk~El~Q~----r~e~q~L~a 140 (246)
.+-.=|.++|...+++|...-..+.+.+.++ +.+.+.+++....+++++...+...+++.+. |-.++
T Consensus 267 ~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~y~~~hP~v~---- 342 (719)
T PRK11519 267 KSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNELTFKEAEISKLYTKEHPAYR---- 342 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHH----
Confidence 4444566666666666666555555555533 2344455555555554443332222222111 01112
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhh
Q 025912 141 IKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRA 185 (246)
Q Consensus 141 ~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Ra 185 (246)
.|..+.+.+.+++..+++....+|....|+..|..+..-.+.
T Consensus 343 ---~l~~~~~~L~~~~~~l~~~~~~lp~~e~~~~~L~Re~~~~~~ 384 (719)
T PRK11519 343 ---TLLEKRKALEDEKAKLNGRVTAMPKTQQEIVRLTRDVESGQQ 384 (719)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 233334445555555555555566555555555444444433
No 89
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=90.18 E-value=7.7 Score=30.45 Aligned_cols=80 Identities=14% Similarity=0.147 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccchhHHHHHHHHhHHH
Q 025912 131 VRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIIS 210 (246)
Q Consensus 131 ~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEkNlis 210 (246)
++..+.++...-.-|..++..++.|. .++|.+.. ++.--.|+|..|+..++..+. .+.+..+|++.+|+++++
T Consensus 15 ~~~~~~~k~~~~~~lE~k~~rl~~Ek--~kadqkyf-a~mr~~d~l~~e~k~L~~~~~----Ks~~~i~~L~~~E~~~~~ 87 (96)
T PF08647_consen 15 LSEQADKKVKELTILEQKKLRLEAEK--AKADQKYF-AAMRSKDALDNEMKKLNTQLS----KSSELIEQLKETEKEFVR 87 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH-HHHHhHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHH
Confidence 34444444444444455555555553 33444444 444458888888888888775 467888999999999999
Q ss_pred HHHHHHH
Q 025912 211 VAQQIER 217 (246)
Q Consensus 211 MarEvEK 217 (246)
-..+.||
T Consensus 88 ~l~~~Ek 94 (96)
T PF08647_consen 88 KLKNLEK 94 (96)
T ss_pred HHHHhhc
Confidence 9888876
No 90
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=89.98 E-value=2.2 Score=31.72 Aligned_cols=42 Identities=26% Similarity=0.309 Sum_probs=30.5
Q ss_pred hhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 113 KLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEING 154 (246)
Q Consensus 113 KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltq 154 (246)
-||+|+||-..+..||..+++.-..+..-=||--.+-+.|..
T Consensus 5 aL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ 46 (61)
T PF08826_consen 5 ALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQ 46 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999998877666655554444443333
No 91
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=89.83 E-value=33 Score=38.01 Aligned_cols=143 Identities=19% Similarity=0.208 Sum_probs=85.6
Q ss_pred HHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH---HHHHHHHhhhhHHhhhchhh
Q 025912 47 LEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAE---VRELYEKSLKLDAELRVIES 123 (246)
Q Consensus 47 LEe~La~Q~~EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~e~q---iReL~ek~~KmEAelRa~e~ 123 (246)
+..+++....+..+=-.+=++|-.+|-.|.+++...++.+..+...+.++.+|-+.. +.....-.-+..++|.-...
T Consensus 799 ~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~ 878 (1174)
T KOG0933|consen 799 AKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKA 878 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHH
Confidence 344556666666666667788999999999999999999999888887777665432 22222222222222222111
Q ss_pred HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhh----------hhhhh
Q 025912 124 MH----AELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGR----------AAIEC 189 (246)
Q Consensus 124 lk----~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~R----------aa~Ey 189 (246)
.- .|+.-.-.+.++.....++...+++.+..|+.+..+|.. ..+.+++.|.+++-..= +.|+|
T Consensus 879 k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~---~~~k~v~~l~~k~~wi~~ek~~fgk~gt~yDf 955 (1174)
T KOG0933|consen 879 KQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKA---NARKEVEKLLKKHEWIGDEKRLFGKKGTDYDF 955 (1174)
T ss_pred HHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHH---HHHHHHHHHHHhccchhHHHHhhcCCCCcccc
Confidence 11 112222333445555555666667777777777776654 45677777777765544 55666
Q ss_pred hcc
Q 025912 190 EKK 192 (246)
Q Consensus 190 EKK 192 (246)
|+-
T Consensus 956 ~~~ 958 (1174)
T KOG0933|consen 956 ESY 958 (1174)
T ss_pred ccC
Confidence 653
No 92
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=89.55 E-value=36 Score=37.30 Aligned_cols=56 Identities=16% Similarity=0.357 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhhhhcccccchhHHHHHHHHhHHHHHHHHHHHHHHHh
Q 025912 165 DMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELA 223 (246)
Q Consensus 165 qip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEkNlisMarEvEKLRaEla 223 (246)
..|.+.+++.++++++...+..+.--++.. -...+.+++.+-.....+..+..-+.
T Consensus 817 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~le~~~~~~~~~~~~~~~~l~ 872 (1201)
T PF12128_consen 817 EKPELEEQLRDLEQELQELEQELNQLQKEV---KQRRKELEEELKALEEQLEQLEEQLR 872 (1201)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777766666655554333222 22344455555555555555554443
No 93
>PRK10884 SH3 domain-containing protein; Provisional
Probab=89.43 E-value=6 Score=35.36 Aligned_cols=21 Identities=10% Similarity=0.417 Sum_probs=8.8
Q ss_pred HhhhhHHhhhchhhHHHHHHHHHH
Q 025912 110 KSLKLDAELRVIESMHAELDRVRA 133 (246)
Q Consensus 110 k~~KmEAelRa~e~lk~El~Q~r~ 133 (246)
+.-++|.+ .+.++++|..++.
T Consensus 94 rlp~le~e---l~~l~~~l~~~~~ 114 (206)
T PRK10884 94 RVPDLENQ---VKTLTDKLNNIDN 114 (206)
T ss_pred HHHHHHHH---HHHHHHHHHHHHh
Confidence 33444444 2333444444443
No 94
>PF15294 Leu_zip: Leucine zipper
Probab=89.16 E-value=7.4 Score=36.73 Aligned_cols=119 Identities=24% Similarity=0.353 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHhhhhHHhhhch----------------------hhHHHHHHHHHHHHHHHHH--------------HHH
Q 025912 100 RDAEVRELYEKSLKLDAELRVI----------------------ESMHAELDRVRADIEKLCV--------------IKQ 143 (246)
Q Consensus 100 ~e~qiReL~ek~~KmEAelRa~----------------------e~lk~El~Q~r~e~q~L~a--------------~RQ 143 (246)
.+.+=|+|++.+.++|..-=+. +-+..|+..+..|.++|.. .+.
T Consensus 84 selEn~eLLe~i~~~E~~~~~~~~~~~~~~~~~KL~pl~e~g~~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~ 163 (278)
T PF15294_consen 84 SELENRELLEQIAEFEKQEFTSSFKPNQETSKPKLEPLNESGGSELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKS 163 (278)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccCCccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666788888888887543222 2266667666666666655 344
Q ss_pred HHHHHHHHHHHHHHHH------hhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccchhHHHHHHHHhHHHHHHHHHH
Q 025912 144 EMIKDLNEINGDLAKA------RDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIER 217 (246)
Q Consensus 144 ELs~qvq~ltqeL~r~------~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEkNlisMarEvEK 217 (246)
.|..+++.+..+.... ....|+++.|..-+-.+. .+|||. --+.-++.++|+-++.+--.+|=+
T Consensus 164 kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK---------~e~ek~-~~d~~~~~k~L~e~L~~~KhelL~ 233 (278)
T PF15294_consen 164 KLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALK---------SELEKA-LQDKESQQKALEETLQSCKHELLR 233 (278)
T ss_pred HHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHH---------HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444422221 234455666666555554 445554 233445999999999999999999
Q ss_pred HHHHHhhHhhh
Q 025912 218 LQAELANAEKR 228 (246)
Q Consensus 218 LRaElanaEkR 228 (246)
++..|..+++=
T Consensus 234 ~QeqL~~aeke 244 (278)
T PF15294_consen 234 VQEQLSLAEKE 244 (278)
T ss_pred cchhhhcchhh
Confidence 99998887764
No 95
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=88.94 E-value=8 Score=34.56 Aligned_cols=55 Identities=16% Similarity=0.314 Sum_probs=38.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 025912 122 ESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETE 176 (246)
Q Consensus 122 e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~l 176 (246)
..+..|+.++..++..|....+.|...|....+++..+..+..++-..+.+|..+
T Consensus 52 ~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~ 106 (251)
T PF11932_consen 52 QELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPL 106 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666777777777777777777777777777777777776666666653
No 96
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=88.86 E-value=0.12 Score=52.58 Aligned_cols=53 Identities=19% Similarity=0.312 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhhhhhcccccchh-HHHHHHHHhHHHHHHHHHHHHHHHhhH
Q 025912 164 KDMAAIKAEIETERQEIHKGRAAIECEKKNRASNH-EQREIMEKNIISVAQQIERLQAELANA 225 (246)
Q Consensus 164 qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~-Eq~qaMEkNlisMarEvEKLRaElana 225 (246)
..||.|.++...++.|+.++|... +|++.+ |+...++..+-.| |+++++++++
T Consensus 257 ~~i~~LE~en~~l~~Elk~Lr~~~-----~n~elLeEe~~sLq~kl~~~----E~~~~el~~l 310 (722)
T PF05557_consen 257 AHIRELEKENRRLREELKHLRQSQ-----ENVELLEEEKRSLQRKLERL----EELEEELAEL 310 (722)
T ss_dssp ---------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 345566666666666666666542 334444 3444444444333 4445555443
No 97
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=88.85 E-value=17 Score=38.88 Aligned_cols=83 Identities=25% Similarity=0.393 Sum_probs=46.5
Q ss_pred CCchHhHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh------------HHHHHHHHH
Q 025912 41 SPSLHHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAE------------RDAEVRELY 108 (246)
Q Consensus 41 ~p~~~~LEe~La~Q~~EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~i~aE------------~e~qiReL~ 108 (246)
+--.+-||+.|+-+.+++..+..-|.-| ..-|..+..+|+.......-..+| .+..+-...
T Consensus 90 ~d~ndklE~~Lankda~lrq~eekn~sl-------qerLelaE~~l~qs~rae~lpeveael~qr~~al~~aee~~~~~e 162 (916)
T KOG0249|consen 90 HDLNDKLENELANKDADLRQNEEKNRSL-------QERLELAEPKLQQSLRAETLPEVEAELAQRNAALTKAEEHSGNIE 162 (916)
T ss_pred ccchHHHHHHHhCcchhhchhHHhhhhh-------hHHHHHhhHhhHhHHhhhhhhhhHHHHHHHHHHHHHHHHhhccHH
Confidence 4446789999999999999888777643 333444444444332211111111 222334455
Q ss_pred HHhhhhHHhhhchhhHHHHHHHHHH
Q 025912 109 EKSLKLDAELRVIESMHAELDRVRA 133 (246)
Q Consensus 109 ek~~KmEAelRa~e~lk~El~Q~r~ 133 (246)
++.+||+.+ .+-+-+||+.++-
T Consensus 163 er~~kl~~~---~qe~naeL~rarq 184 (916)
T KOG0249|consen 163 ERTRKLEEQ---LEELNAELQRARQ 184 (916)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHH
Confidence 666677666 4455556555543
No 98
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=88.79 E-value=22 Score=36.71 Aligned_cols=124 Identities=19% Similarity=0.314 Sum_probs=68.7
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---
Q 025912 89 LSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKD--- 165 (246)
Q Consensus 89 l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qq--- 165 (246)
|...+..+++|+|.+.--|-.-++. ++....++..++..|...+...+.+|+.|-..|++++...+.
T Consensus 2 l~e~l~qlq~Erd~ya~~lk~e~a~----------~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~ 71 (617)
T PF15070_consen 2 LMESLKQLQAERDQYAQQLKEESAQ----------WQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPP 71 (617)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Confidence 3456778889999876666554444 444455666666666666666666666666666666544332
Q ss_pred --hH--------HHHHHHHHHHHHHHhhhhhhhhhcccccchhHHH-HHHHHhHHHHHHHHHHHHHHHh
Q 025912 166 --MA--------AIKAEIETERQEIHKGRAAIECEKKNRASNHEQR-EIMEKNIISVAQQIERLQAELA 223 (246)
Q Consensus 166 --ip--------~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~-qaMEkNlisMarEvEKLRaEla 223 (246)
-| .|.+|++.|++|+-.+-.-+..--+ +.+.+... +..|.-|...=+.++.+..+..
T Consensus 72 ~~~pa~pse~E~~Lq~E~~~L~kElE~L~~qlqaqv~-~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~ 139 (617)
T PF15070_consen 72 PEPPAGPSEVEQQLQAEAEHLRKELESLEEQLQAQVE-NNEQLSRLNQEQEERLAELEEELERLQEQQE 139 (617)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 4566666677666655544433211 11222222 2334445555555555555543
No 99
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=88.73 E-value=7.9 Score=32.53 Aligned_cols=94 Identities=16% Similarity=0.279 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhhhh----hHHHHHHHHHHHHHHHhhhhhhhhhcccccc
Q 025912 124 MHAELDRVRADIEKLCVIKQEMIKDLNE---INGDLAKARDESKD----MAAIKAEIETERQEIHKGRAAIECEKKNRAS 196 (246)
Q Consensus 124 lk~El~Q~r~e~q~L~a~RQELs~qvq~---ltqeL~r~~~d~qq----ip~l~aEid~lrqElqr~Raa~EyEKK~~~e 196 (246)
.-+.++++..|+.+....||.|..|++. ...||..+-.|+.- -|.| ++||+--+|+.++ | +.|
T Consensus 10 ~~~kyq~LQk~l~k~~~~rqkle~qL~Enk~V~~Eldlle~d~~VYKliGpvL------vkqel~EAr~nV~--k--Rle 79 (120)
T KOG3478|consen 10 EANKYQNLQKELEKYVESRQKLETQLQENKIVLEELDLLEEDSNVYKLIGPVL------VKQELEEARTNVG--K--RLE 79 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccchHHHHhcchh------hHHHHHHHHhhHH--H--HHH
Confidence 3456778888889999999999999875 56778777777643 3444 5788888888764 1 122
Q ss_pred hh-HHHHHHHHhHHHHHHHHHHHHHHHhhHhh
Q 025912 197 NH-EQREIMEKNIISVAQQIERLQAELANAEK 227 (246)
Q Consensus 197 ~~-Eq~qaMEkNlisMarEvEKLRaElanaEk 227 (246)
.. --.+-.|+++-.|-+|.+|.|..+++.-+
T Consensus 80 fI~~Eikr~e~~i~d~q~e~~k~R~~v~k~Q~ 111 (120)
T KOG3478|consen 80 FISKEIKRLENQIRDSQEEFEKQREAVIKLQQ 111 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 23567899999999999999999988764
No 100
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.63 E-value=36 Score=36.99 Aligned_cols=80 Identities=28% Similarity=0.326 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 70 ATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDL 149 (246)
Q Consensus 70 atHvaLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qv 149 (246)
+---.|.+||.+...-++.|+.-+-|++...--+--++-.-.. ..|-+..|..|+.+.+|.+...-+-|+-+-
T Consensus 437 ak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~-------q~e~~isei~qlqarikE~q~kl~~l~~Ek 509 (1118)
T KOG1029|consen 437 AKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTK-------QRELMISEIDQLQARIKELQEKLQKLAPEK 509 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhh-------HHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 3444566677777777777766666666654433222221111 233444444444444444444433333333
Q ss_pred HHHHHHH
Q 025912 150 NEINGDL 156 (246)
Q Consensus 150 q~ltqeL 156 (246)
|.|...|
T Consensus 510 q~l~~ql 516 (1118)
T KOG1029|consen 510 QELNHQL 516 (1118)
T ss_pred HHHHHHH
Confidence 3333333
No 101
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.60 E-value=30 Score=35.18 Aligned_cols=19 Identities=21% Similarity=0.382 Sum_probs=12.7
Q ss_pred hHHHHHHHHhHHHHHHHHH
Q 025912 198 HEQREIMEKNIISVAQQIE 216 (246)
Q Consensus 198 ~Eq~qaMEkNlisMarEvE 216 (246)
+--.|.||..|-+.+.|++
T Consensus 344 ~~~IqeleqdL~a~~eei~ 362 (521)
T KOG1937|consen 344 IRRIQELEQDLEAVDEEIE 362 (521)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4456667777777777766
No 102
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=88.60 E-value=17 Score=32.17 Aligned_cols=135 Identities=21% Similarity=0.315 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 72 HVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNE 151 (246)
Q Consensus 72 HvaLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ 151 (246)
.-.|+.+++..+.-..+....+.++..| .+.|.+-..+.+.+ ++.++.+|.+-..|...|...+.-+. .
T Consensus 29 IksLKeei~emkk~e~~~~k~m~ei~~e----N~~L~epL~~a~~e---~~eL~k~L~~y~kdK~~L~~~k~rl~----~ 97 (201)
T PF13851_consen 29 IKSLKEEIAEMKKKEERNEKLMAEISQE----NKRLSEPLKKAEEE---VEELRKQLKNYEKDKQSLQNLKARLK----E 97 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH----H
Confidence 4456777766666555555445444443 46666766666666 66777777777777777766665544 3
Q ss_pred HHHHHHHHhhhh----hhhHHHHHHHHHHHHHHHhhhhhhhhhcccccchhHHHHHHHHhHHHHHHHHHHHHHHHh
Q 025912 152 INGDLAKARDES----KDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELA 223 (246)
Q Consensus 152 ltqeL~r~~~d~----qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEkNlisMarEvEKLRaEla 223 (246)
+.++|..+.-+. |++-.|..|.|.|..=.. .+-.|+-.|+...++ .+|+.|..|...+|+--++|.
T Consensus 98 ~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~--~~i~evqQk~~~kn~----lLEkKl~~l~~~lE~keaqL~ 167 (201)
T PF13851_consen 98 LEKELKDLKWEHEVLEQRFEKLEQERDELYRKFE--SAIQEVQQKTGLKNL----LLEKKLQALSEQLEKKEAQLN 167 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 455555444433 335555555555554433 345566666666654 688888999999999888883
No 103
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=88.50 E-value=35 Score=36.45 Aligned_cols=82 Identities=22% Similarity=0.341 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccchhHHH--HHHH--HhHHHHHHHHHHHH
Q 025912 144 EMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQR--EIME--KNIISVAQQIERLQ 219 (246)
Q Consensus 144 ELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~--qaME--kNlisMarEvEKLR 219 (246)
++..+|..|++|+.+--.++=..|.|+.=++.|+-|+-.+=.+=+-|-|..++-+||. |.+= .|.-.+--=-|.|+
T Consensus 646 ~~k~KIe~L~~eIkkkIe~av~ss~LK~k~E~Lk~Evaka~~~pd~~~k~kieal~~qik~~~~~a~~~~~lkek~e~l~ 725 (762)
T PLN03229 646 NLQEKIESLNEEINKKIERVIRSSDLKSKIELLKLEVAKASKTPDVTEKEKIEALEQQIKQKIAEALNSSELKEKFEELE 725 (762)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHhccHhHHHHHHHHH
Confidence 4467899999999999999999999999999999999888888888888888888873 1111 12223334468899
Q ss_pred HHHhhH
Q 025912 220 AELANA 225 (246)
Q Consensus 220 aElana 225 (246)
+||+.+
T Consensus 726 ~e~~~~ 731 (762)
T PLN03229 726 AELAAA 731 (762)
T ss_pred HHHHHh
Confidence 998654
No 104
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=88.38 E-value=1.7 Score=45.87 Aligned_cols=59 Identities=24% Similarity=0.422 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhh
Q 025912 126 AELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGR 184 (246)
Q Consensus 126 ~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~R 184 (246)
-||-++..++-+|.+.|--|..++-.||-++.++....+.+|.|++++++|+|=+--+=
T Consensus 866 GElthlq~e~~~le~~Rs~laeElvklT~e~e~l~ek~~~~p~~~~~ledL~qRy~a~L 924 (961)
T KOG4673|consen 866 GELTHLQTELASLESIRSSLAEELVKLTAECEKLREKADRVPGIKAELEDLRQRYAAAL 924 (961)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 48889999999999999999999999999999999999999999999999998765443
No 105
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=88.01 E-value=8.3 Score=39.59 Aligned_cols=94 Identities=19% Similarity=0.285 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh----HHHHHHHHHHHHHHHhhhhhhhhhc--ccccchhH-HHHHH
Q 025912 132 RADIEKLCVIKQEMIKDLNEINGDLAKARDESKDM----AAIKAEIETERQEIHKGRAAIECEK--KNRASNHE-QREIM 204 (246)
Q Consensus 132 r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqi----p~l~aEid~lrqElqr~Raa~EyEK--K~~~e~~E-q~qaM 204 (246)
..|++.|...-++|..++..+..++....+..+++ -..+++...+.+++.-...+++.-- ..|++.++ ..++=
T Consensus 327 ~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s 406 (594)
T PF05667_consen 327 EQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEAS 406 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444332 2334455555666666666655432 23333332 23455
Q ss_pred HHhHHHHHHHHHHHHHHHhhH
Q 025912 205 EKNIISVAQQIERLQAELANA 225 (246)
Q Consensus 205 EkNlisMarEvEKLRaElana 225 (246)
+.||+.++.+-|+-|+.|-.-
T Consensus 407 ~~rl~~L~~qWe~~R~pL~~e 427 (594)
T PF05667_consen 407 EQRLVELAQQWEKHRAPLIEE 427 (594)
T ss_pred HHHHHHHHHHHHHHHhHHHHH
Confidence 889999999999999988543
No 106
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=87.93 E-value=33 Score=34.78 Aligned_cols=108 Identities=19% Similarity=0.207 Sum_probs=62.1
Q ss_pred hHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-------hhHHHHHHHHHHHh---hhhH
Q 025912 46 HLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVK-------AERDAEVRELYEKS---LKLD 115 (246)
Q Consensus 46 ~LEe~La~Q~~EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~i~-------aE~e~qiReL~ek~---~KmE 115 (246)
-+++|+.--..+++.|..|----.+-|-.||||-.+.++=.+.|-....+.. +|.+-.=|+++-|. +-+|
T Consensus 219 di~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~reqElraeE~l~Ee~rrhrEil~k~eReasle 298 (502)
T KOG0982|consen 219 DIERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQRREQELRAEESLSEEERRHREILIKKEREASLE 298 (502)
T ss_pred hHHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888877666666688899998888885555533332211 12223333433322 2222
Q ss_pred Hh-----hhc----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 116 AE-----LRV----IESMHAELDRVRADIEKLCVIKQEMIKDLNEIN 153 (246)
Q Consensus 116 Ae-----lRa----~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~lt 153 (246)
.| ++. +..+|..+--+++-+.+|...+|-++.++..++
T Consensus 299 ~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lr 345 (502)
T KOG0982|consen 299 KENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALR 345 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 22 121 345566666666666666666666666665554
No 107
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=87.41 E-value=17 Score=30.98 Aligned_cols=37 Identities=16% Similarity=0.217 Sum_probs=19.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 025912 58 IQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAA 94 (246)
Q Consensus 58 iqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~ 94 (246)
..+.=.++--|-....+|.+||...+.+...+-....
T Consensus 12 LK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daE 48 (140)
T PF10473_consen 12 LKESESEKDSLEDHVESLERELEMSQENKECLILDAE 48 (140)
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3333444444555555666666666666555543333
No 108
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=87.04 E-value=25 Score=32.47 Aligned_cols=52 Identities=23% Similarity=0.254 Sum_probs=30.4
Q ss_pred HHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 025912 47 LEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKA 98 (246)
Q Consensus 47 LEe~La~Q~~EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~i~a 98 (246)
|+-++.-+..+..++-++=-++-..-+++..++...+.++.++...|.+++.
T Consensus 22 l~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~ 73 (239)
T COG1579 22 LEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRE 73 (239)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444445555555555566666777777777777666666666553
No 109
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=86.41 E-value=30 Score=33.50 Aligned_cols=99 Identities=16% Similarity=0.296 Sum_probs=66.8
Q ss_pred HHHHHHhhhhHHhhhc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhh
Q 025912 105 RELYEKSLKLDAELRV-IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKG 183 (246)
Q Consensus 105 ReL~ek~~KmEAelRa-~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~ 183 (246)
-..+||+.+-|.-|-. .+++..|..+++.+..+....-+++++-|..+|++|++. ..|++.+++|+.
T Consensus 251 ~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~I----------seeLe~vK~eme-- 318 (359)
T PF10498_consen 251 SKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEI----------SEELEQVKQEME-- 318 (359)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH----------HHHHHHHHHHHH--
Confidence 3456777777766654 488888888888888888888888888888888888774 455666666654
Q ss_pred hhhhhhhcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhHhhh
Q 025912 184 RAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANAEKR 228 (246)
Q Consensus 184 Raa~EyEKK~~~e~~Eq~qaMEkNlisMarEvEKLRaElanaEkR 228 (246)
||...+..- ..||.+-+=|-||+.|+..-+-|
T Consensus 319 ------erg~~mtD~-------sPlv~IKqAl~kLk~EI~qMdvr 350 (359)
T PF10498_consen 319 ------ERGSSMTDG-------SPLVKIKQALTKLKQEIKQMDVR 350 (359)
T ss_pred ------HhcCCCCCC-------CHHHHHHHHHHHHHHHHHHhhhh
Confidence 222222211 12566666777888887766544
No 110
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=86.28 E-value=0.22 Score=50.84 Aligned_cols=118 Identities=21% Similarity=0.218 Sum_probs=0.0
Q ss_pred HhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHhhhhhh---------------hHH
Q 025912 110 KSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEIN------GDLAKARDESKD---------------MAA 168 (246)
Q Consensus 110 k~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~lt------qeL~r~~~d~qq---------------ip~ 168 (246)
....|+..|...+.++.++..++.+.+.|...+....+=.+... .+|.+.-...++ +-.
T Consensus 289 e~~sLq~kl~~~E~~~~el~~lq~e~~~Le~el~sW~sl~~~~~~~~~sPe~l~~~l~~lq~~~~~L~ek~g~~~~~~~~ 368 (722)
T PF05557_consen 289 EKRSLQRKLERLEELEEELAELQLENEKLEDELNSWESLLQDIGLEFDSPEDLARALVQLQQENASLTEKLGSLQSELRE 368 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 34455566666677777777777777777776666554333311 122222222211 333
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhHhh
Q 025912 169 IKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANAEK 227 (246)
Q Consensus 169 l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEkNlisMarEvEKLRaElanaEk 227 (246)
+...++.|..|+..+..-++--+......-....-+|+-.+-+.+|++-||+-|.+.++
T Consensus 369 l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~ 427 (722)
T PF05557_consen 369 LEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYDK 427 (722)
T ss_dssp -----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44455555555555555555555444444455667888889999999999999988775
No 111
>PF12592 DUF3763: Protein of unknown function (DUF3763); InterPro: IPR022547 This domain is found in bacterial regulartory ATPases 3.6.3. from EC, and is approximately 60 amino acids in length. The domain is found C-terminal to PF07728 from PFAM. There is a single completely conserved residue F that may be functionally important. ; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances; PDB: 3NBX_X.
Probab=86.22 E-value=4.7 Score=29.57 Aligned_cols=55 Identities=16% Similarity=0.259 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhhhcccccchhHHHHHHHHhHHHHHHHHHHHHH
Q 025912 166 MAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQA 220 (246)
Q Consensus 166 ip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEkNlisMarEvEKLRa 220 (246)
-+.+.++++.+.++|...|+-|.---.-++-.-+=.-.||-.|..++..++.++.
T Consensus 2 ~~e~~~qL~~~~~~l~~qR~~F~~~qPhlFI~~~wl~~IE~Sl~~l~eqL~q~~~ 56 (57)
T PF12592_consen 2 PEEALAQLDEAEHELRQQRSLFHQHQPHLFIDSEWLAAIEASLQQLAEQLEQLKQ 56 (57)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHTT---TTS-HHHHHHHHHHHHHHHHHHHHH--
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCcCcCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4578899999999999999999999999999999999999999999999998874
No 112
>PRK04863 mukB cell division protein MukB; Provisional
Probab=86.20 E-value=68 Score=36.62 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=12.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhhHh
Q 025912 201 REIMEKNIISVAQQIERLQAELANAE 226 (246)
Q Consensus 201 ~qaMEkNlisMarEvEKLRaElanaE 226 (246)
++.++..+-.+-+++.++.+.+...+
T Consensus 451 lee~e~qL~elE~kL~~lea~leql~ 476 (1486)
T PRK04863 451 EQEATEELLSLEQKLSVAQAAHSQFE 476 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555544433
No 113
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=86.19 E-value=17 Score=29.72 Aligned_cols=37 Identities=22% Similarity=0.316 Sum_probs=17.9
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 025912 58 IQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAA 94 (246)
Q Consensus 58 iqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~ 94 (246)
+..|-.+.+++-..--.....+..++.||........
T Consensus 5 ~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~ 41 (132)
T PF07926_consen 5 LSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQ 41 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444445555555555555544444
No 114
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=86.10 E-value=14 Score=38.57 Aligned_cols=91 Identities=21% Similarity=0.294 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccch---hHHHH
Q 025912 126 AELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASN---HEQRE 202 (246)
Q Consensus 126 ~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~---~Eq~q 202 (246)
-|+.+...++.++...=+.|..+.+.|..++. .|+.||+.|+.++-++|.-++.+...+-+. -+-.-
T Consensus 415 ~ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~e----------e~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~ 484 (652)
T COG2433 415 REITVYEKRIKKLEETVERLEEENSELKRELE----------ELKREIEKLESELERFRREVRDKVRKDREIRARDRRIE 484 (652)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 34444444444444444444444444433332 233555555555555555554333222221 12233
Q ss_pred HHHHhHHHHHHHHHHHHHHHhhHh
Q 025912 203 IMEKNIISVAQQIERLQAELANAE 226 (246)
Q Consensus 203 aMEkNlisMarEvEKLRaElanaE 226 (246)
.++++|.-=.++||.|..+|+...
T Consensus 485 ~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 485 RLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666665554
No 115
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=86.01 E-value=8.5 Score=29.04 Aligned_cols=46 Identities=22% Similarity=0.242 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHh
Q 025912 66 QRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKS 111 (246)
Q Consensus 66 qRLAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~ 111 (246)
++|-++..+|+-.|..+...+...-.....+..|+|.-++.|-+..
T Consensus 1 ~~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~ 46 (69)
T PF14197_consen 1 QKLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAY 46 (69)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788888888888888888888888888889887666654443
No 116
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=85.82 E-value=35 Score=32.93 Aligned_cols=25 Identities=24% Similarity=0.314 Sum_probs=17.2
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHHHh
Q 025912 158 KARDESKDMAAIKAEIETERQEIHK 182 (246)
Q Consensus 158 r~~~d~qqip~l~aEid~lrqElqr 182 (246)
+...+..++-.++++|+.+++.+..
T Consensus 269 ~y~~~hP~v~~l~~qi~~l~~~l~~ 293 (498)
T TIGR03007 269 RYTDKHPDVIATKREIAQLEEQKEE 293 (498)
T ss_pred HhcccChHHHHHHHHHHHHHHHHHh
Confidence 3445666777778888888777654
No 117
>PF13514 AAA_27: AAA domain
Probab=85.53 E-value=58 Score=35.26 Aligned_cols=121 Identities=17% Similarity=0.272 Sum_probs=63.3
Q ss_pred HHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHhhhhhhhHHHH
Q 025912 104 VRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMI-------------KDLNEINGDLAKARDESKDMAAIK 170 (246)
Q Consensus 104 iReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs-------------~qvq~ltqeL~r~~~d~qqip~l~ 170 (246)
+.+.++....+-..++....++..+.+...++..+...-..|. .-+..+...|..++...+++-.+.
T Consensus 728 ~~~~l~~l~~l~~~~~~~~~~~~ri~~~~~~~~~f~~~~~~L~~~l~~~~~~~~~~~~~~~L~~~l~~a~~~~~~~~~l~ 807 (1111)
T PF13514_consen 728 ALEALELLEELREALAEIRELRRRIEQMEADLAAFEEQVAALAERLGPDLPEDPAEEALEALRARLEEAREAQEERERLQ 807 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444333333332 456777778888887777777778
Q ss_pred HHHHHHHHHHHhhhhhhhhhc--------ccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhHhhh
Q 025912 171 AEIETERQEIHKGRAAIECEK--------KNRASNHEQREIMEKNIISVAQQIERLQAELANAEKR 228 (246)
Q Consensus 171 aEid~lrqElqr~Raa~EyEK--------K~~~e~~Eq~qaMEkNlisMarEvEKLRaElanaEkR 228 (246)
.+++.+++++..+...++.-+ .+.++..+.... .+....+..+|+.++...+..
T Consensus 808 ~~~~~~~~~~~~~~~~l~~~~~~l~~L~~~a~~~~~e~l~~----~~~~~~~~~~l~~~~~~~~~~ 869 (1111)
T PF13514_consen 808 EQLEELEEELEQAEEELEELEAELAELLEQAGVEDEEELRE----AEERAEERRELREELEDLERQ 869 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 888877777777766553332 223333333322 333445555555555544443
No 118
>PF07794 DUF1633: Protein of unknown function (DUF1633); InterPro: IPR012436 This family contains sequences derived from a group of hypothetical proteins expressed by Arabidopsis thaliana (Mouse-ear cress). These sequences are highly similar and the region concerned is about 100 residues long.
Probab=85.16 E-value=15 Score=38.00 Aligned_cols=116 Identities=24% Similarity=0.286 Sum_probs=70.7
Q ss_pred HHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhh
Q 025912 105 RELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGR 184 (246)
Q Consensus 105 ReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~R 184 (246)
++..+|+.-||.|+ +.++.+.+-.|.-|..|...|.||+.+|-.|+.--+-+ .+-+-.-+-|+-.- +-++=
T Consensus 593 kG~Aeki~~me~Ei---~glq~DkQ~ar~qIh~Le~~Reelsk~V~DLtssaQga---kKAVhdaK~ElA~~---Y~klL 663 (790)
T PF07794_consen 593 KGYAEKIGFMEMEI---GGLQADKQTARNQIHRLEQRREELSKRVMDLTSSAQGA---KKAVHDAKVELAAA---YSKLL 663 (790)
T ss_pred hhhHhhhhhhhhhh---cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---HHHHHHHHHHHHHH---HHHHH
Confidence 56788999999994 56788999999999999999999999998887432211 11122222222111 11111
Q ss_pred hhhh---hhcccccchh----------HHHHHHHHhHHHHHHHHHHHHHHHhhHhhhH
Q 025912 185 AAIE---CEKKNRASNH----------EQREIMEKNIISVAQQIERLQAELANAEKRA 229 (246)
Q Consensus 185 aa~E---yEKK~~~e~~----------Eq~qaMEkNlisMarEvEKLRaElanaEkRa 229 (246)
+.|- --||.+.-.. .=...|=||-|..+-|--.|.|||-.+|.|-
T Consensus 664 agiKEKwv~KKe~t~le~qAaEvesNlaLidqi~kaaIdltvEkprlqAeLdd~ea~c 721 (790)
T PF07794_consen 664 AGIKEKWVAKKEYTVLEGQAAEVESNLALIDQITKAAIDLTVEKPRLQAELDDLEARC 721 (790)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHhhchHHHhhh
Confidence 1110 0123332222 2234466677777867777889998877653
No 119
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=85.07 E-value=29 Score=31.36 Aligned_cols=96 Identities=15% Similarity=0.159 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccc----cchhHHH
Q 025912 126 AELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNR----ASNHEQR 201 (246)
Q Consensus 126 ~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~----~e~~Eq~ 201 (246)
.|++++-++++.|..--|.|....-.+..|+.-+.+- -.+|.|..+|..|+.|.---|--++.=|.|. .+-.+|.
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~-Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~v 157 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSA-LTTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQV 157 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHH
Confidence 6889999999999888888888888888887666554 3588888888888888776666555555443 4567788
Q ss_pred HHHHHhHHHHHHHHHHHHHHH
Q 025912 202 EIMEKNIISVAQQIERLQAEL 222 (246)
Q Consensus 202 qaMEkNlisMarEvEKLRaEl 222 (246)
.-|=...++|-|....+=-||
T Consensus 158 ~~~y~~~~~~wrk~krmf~ei 178 (201)
T KOG4603|consen 158 YREYQKYCKEWRKRKRMFREI 178 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888887765555
No 120
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=84.91 E-value=33 Score=32.18 Aligned_cols=68 Identities=13% Similarity=0.263 Sum_probs=60.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh----HHHHHHHHHHHHHHHhhhhhh
Q 025912 120 VIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDM----AAIKAEIETERQEIHKGRAAI 187 (246)
Q Consensus 120 a~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqi----p~l~aEid~lrqElqr~Raa~ 187 (246)
++..+..++.+.+..+..|.+.-..|.+++..-++||.|.+.-.+.+ |+-.+|-|.|..||+..=..|
T Consensus 170 ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y 241 (267)
T PF10234_consen 170 AIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIY 241 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHH
Confidence 35788899999999999999999999999999999999998777765 899999999999999875543
No 121
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=84.61 E-value=21 Score=34.42 Aligned_cols=48 Identities=10% Similarity=0.205 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhhhh
Q 025912 142 KQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIEC 189 (246)
Q Consensus 142 RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~Ey 189 (246)
.+-+-.+.+.|.++++.+++.+..+|....++..|..|.+-.|+.||-
T Consensus 344 ~~~l~~~~~~L~~~~~~l~~~~~~~~~~~~~l~~L~Re~~~~r~~ye~ 391 (458)
T COG3206 344 LALLEQQEAALEKELAQLKGRLSKLPKLQVQLRELEREAEAARSLYET 391 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchHhhhHHHHHHHHHHHHHHHHHH
Confidence 344778888899999999999999999999999999999999988763
No 122
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=84.49 E-value=23 Score=29.75 Aligned_cols=62 Identities=16% Similarity=0.338 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhh
Q 025912 123 SMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRA 185 (246)
Q Consensus 123 ~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Ra 185 (246)
.|..|+.+++.++..|......|.+++..|+..+.-.. =..+|-.|..|+..|..-|..+|+
T Consensus 76 ~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~e-l~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 76 ELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEE-LREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555555555555555555555544444432111 012355555566666655555554
No 123
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=84.34 E-value=66 Score=34.87 Aligned_cols=50 Identities=18% Similarity=0.257 Sum_probs=26.5
Q ss_pred HHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 025912 47 LEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASV 96 (246)
Q Consensus 47 LEe~La~Q~~EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~i 96 (246)
.+..+.....+++.+...-..+....-.+.+.+...+..+..+...+..+
T Consensus 528 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 577 (1047)
T PRK10246 528 NQSRLDALEKEVKKLGEEGAALRGQLDALTKQLQRDESEAQSLRQEEQAL 577 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666655444544444455555555555555544444433
No 124
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=84.32 E-value=76 Score=35.56 Aligned_cols=17 Identities=35% Similarity=0.325 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHhhh
Q 025912 78 ELSLAEQELRHLSSVAA 94 (246)
Q Consensus 78 eL~aaq~El~~l~~~i~ 94 (246)
++..+..++........
T Consensus 801 ~~~~a~~~l~~a~~~l~ 817 (1353)
T TIGR02680 801 QAESAERELARAARKAA 817 (1353)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444445444443333
No 125
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=84.22 E-value=9.4 Score=32.05 Aligned_cols=65 Identities=12% Similarity=0.381 Sum_probs=49.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHhhhhhh
Q 025912 120 VIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESK----DMAAIKAEIETERQEIHKGRAAI 187 (246)
Q Consensus 120 a~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~q----qip~l~aEid~lrqElqr~Raa~ 187 (246)
|...|-+-|.||.. .|.+.|.+|+.+++.+..-|.....=.+ ++..++.+++.++-++.....++
T Consensus 44 A~~~v~kql~~vs~---~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V 112 (126)
T PF07889_consen 44 AVASVSKQLEQVSE---SLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMV 112 (126)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 56788889999988 8999999999999999887776554333 36667777777777666655544
No 126
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=84.17 E-value=70 Score=35.03 Aligned_cols=72 Identities=13% Similarity=0.195 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHH----HhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccchhHHHHHHHHhHHHHHHHH
Q 025912 144 EMIKDLNEINGDLAK----ARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQI 215 (246)
Q Consensus 144 ELs~qvq~ltqeL~r----~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEkNlisMarEv 215 (246)
+|..+|..+..+..+ ..+..+.+-.++.|+..+.-|+..+--.+..---.++..+.|.-..+++=+..+-|+
T Consensus 470 ~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~~~~ 545 (980)
T KOG0980|consen 470 NLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLAAEL 545 (980)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 344444444444433 556677788899999999888888887777666667777777777777766554443
No 127
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=84.14 E-value=29 Score=30.52 Aligned_cols=18 Identities=28% Similarity=0.471 Sum_probs=7.6
Q ss_pred HHHhhHHHHHHHHHhhHH
Q 025912 50 RIAIQHSDIQSLLQDNQR 67 (246)
Q Consensus 50 ~La~Q~~EiqrLl~dNqR 67 (246)
+|..-..+|+.+..+|..
T Consensus 21 ~L~~~~~~l~~~~~~~~~ 38 (302)
T PF10186_consen 21 RLLELRSELQQLKEENEE 38 (302)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 128
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=84.02 E-value=4.5 Score=31.05 Aligned_cols=45 Identities=27% Similarity=0.463 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 025912 131 VRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIET 175 (246)
Q Consensus 131 ~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~ 175 (246)
+..|+..|...+.||..++.....++.+.+.+.+++..+++..+.
T Consensus 1 L~kdv~~l~~EkeeL~~klk~~qeel~~~k~~~~~~~~ik~~~eK 45 (69)
T PF08912_consen 1 LTKDVANLAKEKEELNNKLKKQQEELQKLKEEEQEIEEIKAQYEK 45 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999888888776543
No 129
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=84.00 E-value=40 Score=37.38 Aligned_cols=141 Identities=19% Similarity=0.262 Sum_probs=90.4
Q ss_pred HHHHHHHHHhhhhHHhhh----chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hhhhHHHHHHH
Q 025912 102 AEVRELYEKSLKLDAELR----VIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE----SKDMAAIKAEI 173 (246)
Q Consensus 102 ~qiReL~ek~~KmEAelR----a~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d----~qqip~l~aEi 173 (246)
.+.+++..+.-++|++-- ..+.++..+.++..++..|...-.||...++.|..|.+.+.++ .++--.|.-++
T Consensus 230 rEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~ 309 (1200)
T KOG0964|consen 230 RELNEINGELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKI 309 (1200)
T ss_pred hHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 344555555556665532 3467889999999999999999999999999999998888777 44556677778
Q ss_pred HHHHHHHHhhhhh---hhhh----cccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhHhhhHhHHHhhhhcCCCCCCCC
Q 025912 174 ETERQEIHKGRAA---IECE----KKNRASNHEQREIMEKNIISVAQQIERLQAELANAEKRARAAAAAAAVNPSIYSLF 246 (246)
Q Consensus 174 d~lrqElqr~Raa---~EyE----KK~~~e~~Eq~qaMEkNlisMarEvEKLRaElanaEkRa~a~~aaaa~np~~~~~~ 246 (246)
+.+++++-.-+-. -... +..-.+...-+...+..+-++..|-..++..|+..+.+.+-.- +.-|-||-|
T Consensus 310 kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~----~Kqgr~sqF 385 (1200)
T KOG0964|consen 310 KDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLL----AKQGRYSQF 385 (1200)
T ss_pred HHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHH----Hhhcccccc
Confidence 8888776432110 0000 0111223334455666677777777777777777777665443 234555544
No 130
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=83.92 E-value=49 Score=33.06 Aligned_cols=36 Identities=28% Similarity=0.302 Sum_probs=22.9
Q ss_pred cccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhHh
Q 025912 191 KKNRASNHEQREIMEKNIISVAQQIERLQAELANAE 226 (246)
Q Consensus 191 KK~~~e~~Eq~qaMEkNlisMarEvEKLRaElanaE 226 (246)
||+..++--+.+.=++.+=.....-..|+.+|+.++
T Consensus 209 kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e 244 (420)
T COG4942 209 KKTLAQLNSELSADQKKLEELRANESRLKNEIASAE 244 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344444444445555566667777777888888888
No 131
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=83.86 E-value=63 Score=34.22 Aligned_cols=75 Identities=20% Similarity=0.349 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhH
Q 025912 147 KDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANA 225 (246)
Q Consensus 147 ~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEkNlisMarEvEKLRaElana 225 (246)
..+..+...+...+...+.+-.+..++..+...+...+..+ +-.-+.+++.+..+.++..+...+++|..++...
T Consensus 274 ~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l 348 (908)
T COG0419 274 EELRELERLLEELEEKIERLEELEREIEELEEELEGLRALL----EELEELLEKLKSLEERLEKLEEKLEKLESELEEL 348 (908)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777778888888888777777733322 2233456667777778888888888888777665
No 132
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=83.29 E-value=58 Score=33.40 Aligned_cols=33 Identities=21% Similarity=0.221 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Q 025912 69 AATHVALKQELSLAEQELRHLSSVAASVKAERD 101 (246)
Q Consensus 69 AatHvaLrQeL~aaq~El~~l~~~i~~i~aE~e 101 (246)
..+-.-|...|...+++|......+...+.++.
T Consensus 193 ~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~ 225 (754)
T TIGR01005 193 TAAADFLAPEIADLSKQSRDAEAEVAAYRAQSD 225 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 345667788888888888887777777776543
No 133
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=83.27 E-value=52 Score=34.32 Aligned_cols=107 Identities=19% Similarity=0.219 Sum_probs=79.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---------hhHHHHHHHHHHHHHHHhhhhhhhhhcc
Q 025912 122 ESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESK---------DMAAIKAEIETERQEIHKGRAAIECEKK 192 (246)
Q Consensus 122 e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~q---------qip~l~aEid~lrqElqr~Raa~EyEKK 192 (246)
+.-++++.|.-++...|....|.|+.+++.+.+++.+.-++.. .+-.++|.+++|+.|.|++.-+++--|.
T Consensus 307 qe~~a~v~q~~~e~~~l~~eaq~l~~~L~~~~~e~~~~~~~~s~~~al~~ele~~~l~A~l~~L~se~q~L~~~~~~r~e 386 (632)
T PF14817_consen 307 QEQWAHVQQFLAEEDALNKEAQALSQRLQRLLEEIERRLSGSSEREALALELEVAGLKASLNALRSECQRLKEAAAERQE 386 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445777888888888888888888888888888877655432 3567899999999999999988875542
Q ss_pred -----------------cccchhHHHHHHHHhHHHHHHHHHHHHHHHhhHhhh
Q 025912 193 -----------------NRASNHEQREIMEKNIISVAQQIERLQAELANAEKR 228 (246)
Q Consensus 193 -----------------~~~e~~Eq~qaMEkNlisMarEvEKLRaElanaEkR 228 (246)
.-.+.-+|.++..|+=.+.+..+.+..+|+-+.-.+
T Consensus 387 ~~~~Lq~K~q~I~~frqlv~e~QeqIr~LiK~Nsaakt~L~q~~~E~~~~~~~ 439 (632)
T PF14817_consen 387 ALRSLQAKWQRILDFRQLVSEKQEQIRALIKGNSAAKTQLEQSPAEAQEFVQR 439 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhChHHHHHHHhc
Confidence 234455677777777777777888888877655443
No 134
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=83.09 E-value=52 Score=32.74 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHHHHhhhhhh
Q 025912 166 MAAIKAEIETERQEIHKGRAAI 187 (246)
Q Consensus 166 ip~l~aEid~lrqElqr~Raa~ 187 (246)
+|.|+.|.+.++.|++.++..+
T Consensus 276 l~~l~~E~~~~~ee~~~l~~Qi 297 (511)
T PF09787_consen 276 LEELKQERDHLQEEIQLLERQI 297 (511)
T ss_pred chhhHHHHHHHHHHHHHHHHHH
Confidence 6777777777777777777666
No 135
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=82.98 E-value=47 Score=33.19 Aligned_cols=58 Identities=16% Similarity=0.173 Sum_probs=39.3
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhHhhh
Q 025912 159 ARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANAEKR 228 (246)
Q Consensus 159 ~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEkNlisMarEvEKLRaElanaEkR 228 (246)
...++-+||.++++|..|+++|...|+-+--.. +. . ++-..+.|-|.|.-|..-|++.
T Consensus 309 ~~p~sPqV~~l~~rI~aLe~QIa~er~kl~~~~-g~-~----------~la~~laeYe~L~le~efAe~~ 366 (434)
T PRK15178 309 GLDQNPLIPRLSAKIKVLEKQIGEQRNRLSNKL-GS-Q----------GSSESLSLFEDLRLQSEIAKAR 366 (434)
T ss_pred cCCCCCchhHHHHHHHHHHHHHHHHHHHhhcCC-CC-C----------chhHHHHHHHHHHHHHHHHHHH
Confidence 356789999999999999999998887774222 11 0 2234555666666666656554
No 136
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=82.94 E-value=90 Score=35.34 Aligned_cols=12 Identities=17% Similarity=0.509 Sum_probs=6.0
Q ss_pred HHHHhhHHHHHH
Q 025912 49 DRIAIQHSDIQS 60 (246)
Q Consensus 49 e~La~Q~~Eiqr 60 (246)
+++..+..|.++
T Consensus 475 ~~lk~~~~el~~ 486 (1317)
T KOG0612|consen 475 EKLKSEESELQR 486 (1317)
T ss_pred HHHHHHHHHHHH
Confidence 344455555553
No 137
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=82.67 E-value=30 Score=29.63 Aligned_cols=15 Identities=20% Similarity=0.468 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHhhH
Q 025912 211 VAQQIERLQAELANA 225 (246)
Q Consensus 211 MarEvEKLRaElana 225 (246)
+..||..||+++.++
T Consensus 136 i~~ei~~lr~~iE~~ 150 (177)
T PF07798_consen 136 IDTEIANLRTEIESL 150 (177)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455666666666544
No 138
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=82.67 E-value=27 Score=33.28 Aligned_cols=69 Identities=17% Similarity=0.252 Sum_probs=52.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhh-hhhHHHHHHHHHHHHHHHhhhhhhh-hhc
Q 025912 123 SMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKA-RDES-KDMAAIKAEIETERQEIHKGRAAIE-CEK 191 (246)
Q Consensus 123 ~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~-~~d~-qqip~l~aEid~lrqElqr~Raa~E-yEK 191 (246)
.+-....|+|-++-.+...=-++..+++.|+.-=-+. .++. ..|++.+..|+.++.++..++..|+ |.+
T Consensus 38 ~~yQ~~EQAr~~A~~fA~~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~ 109 (301)
T PF06120_consen 38 YFYQNAEQARQEAIEFADSLDELKEKLKEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQ 109 (301)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778899999999998899999988887643332 2332 3489999999999999999998884 543
No 139
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=82.57 E-value=16 Score=29.19 Aligned_cols=65 Identities=20% Similarity=0.267 Sum_probs=49.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhhh
Q 025912 120 VIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIE 188 (246)
Q Consensus 120 a~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~E 188 (246)
+.-.+..+|..++.+.-.+...-++|+.+++.++.+...-.. -|.+..+|+.++.+++..|.-..
T Consensus 11 ~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~----~~~~~~~l~~~~~~lk~~r~~~~ 75 (106)
T PF05837_consen 11 ESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE----DEELSEKLEKLEKELKKSRQRWR 75 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc----chHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777778888888888888888887554444 67888999999999888776543
No 140
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=82.56 E-value=50 Score=36.49 Aligned_cols=123 Identities=20% Similarity=0.314 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 025912 102 AEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIH 181 (246)
Q Consensus 102 ~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElq 181 (246)
.|+|+|.+|.--+-..=..-..==.||..++.+...|...|--++++.-.|.++|.+++-+.++.-+.+.+.-..--+++
T Consensus 231 ~QvrdLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~a 310 (1243)
T KOG0971|consen 231 AQVRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTA 310 (1243)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhhhhcccccchhHHHH----HHHHhHHHHHHHHHHHHHHHhh
Q 025912 182 KGRAAIECEKKNRASNHEQRE----IMEKNIISVAQQIERLQAELAN 224 (246)
Q Consensus 182 r~Raa~EyEKK~~~e~~Eq~q----aMEkNlisMarEvEKLRaElan 224 (246)
-.=-.+-.+|----|..|-+| +....+..|.-++|=|++|..|
T Consensus 311 d~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmee 357 (1243)
T KOG0971|consen 311 DAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEE 357 (1243)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 141
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=82.53 E-value=56 Score=32.68 Aligned_cols=69 Identities=14% Similarity=0.310 Sum_probs=36.3
Q ss_pred HHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhh
Q 025912 115 DAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKG 183 (246)
Q Consensus 115 EAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~ 183 (246)
+.|=...+.+...+..++.-..|......++....+.+.++|.........+..|..+++.+++++..+
T Consensus 297 ~~dp~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~ 365 (563)
T TIGR00634 297 EFDPERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKA 365 (563)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444555555544444445555666666666666655555555555555555555555443
No 142
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=82.47 E-value=29 Score=29.29 Aligned_cols=46 Identities=17% Similarity=0.294 Sum_probs=27.8
Q ss_pred hHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 46 HLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSS 91 (246)
Q Consensus 46 ~LEe~La~Q~~EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~ 91 (246)
-+++.+...+.|+..+-..++-+......++.+....+++++....
T Consensus 85 ~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 130 (191)
T PF04156_consen 85 ELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEE 130 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4555666666666666666666666666666666655554444433
No 143
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=82.30 E-value=46 Score=31.50 Aligned_cols=33 Identities=12% Similarity=0.186 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Q 025912 68 LAATHVALKQELSLAEQELRHLSSVAASVKAER 100 (246)
Q Consensus 68 LAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~ 100 (246)
...+-.-|..++...+++|......+.+.+.++
T Consensus 169 ~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~ 201 (444)
T TIGR03017 169 AQKAALWFVQQIAALREDLARAQSKLSAYQQEK 201 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344555666666666666666666666655554
No 144
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=82.17 E-value=27 Score=28.76 Aligned_cols=23 Identities=17% Similarity=0.394 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHhhhhhhhhhcc
Q 025912 170 KAEIETERQEIHKGRAAIECEKK 192 (246)
Q Consensus 170 ~aEid~lrqElqr~Raa~EyEKK 192 (246)
+.|+..++-=++..++.|..|.|
T Consensus 114 kee~~klk~~~~~~~tq~~~e~r 136 (151)
T PF11559_consen 114 KEELQKLKNQLQQRKTQYEHELR 136 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444445544444
No 145
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=82.06 E-value=41 Score=32.27 Aligned_cols=77 Identities=18% Similarity=0.248 Sum_probs=47.8
Q ss_pred hhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhc
Q 025912 112 LKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEK 191 (246)
Q Consensus 112 ~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEK 191 (246)
.|.|-+--...+|+.|.+-+.-.+..|...||-|+-.+|.-+.-+.= --.|+..-+..|+.|-+|+.++++-+|--.
T Consensus 53 qK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~---lEgQl~s~Kkqie~Leqelkr~KsELErsQ 129 (307)
T PF10481_consen 53 QKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNF---LEGQLNSCKKQIEKLEQELKRCKSELERSQ 129 (307)
T ss_pred HHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555656667777777777777777777777666655554444332 223556666677777777777776665443
No 146
>PRK01156 chromosome segregation protein; Provisional
Probab=82.00 E-value=70 Score=33.42 Aligned_cols=10 Identities=20% Similarity=0.321 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 025912 77 QELSLAEQEL 86 (246)
Q Consensus 77 QeL~aaq~El 86 (246)
.+|...+.++
T Consensus 197 ~eL~~~~~~i 206 (895)
T PRK01156 197 LELENIKKQI 206 (895)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 147
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=81.78 E-value=19 Score=30.27 Aligned_cols=61 Identities=26% Similarity=0.384 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhhh
Q 025912 127 ELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIE 188 (246)
Q Consensus 127 El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~E 188 (246)
|+..+..++..|...-++|..++..+..+|..+.+.. ....|...|..|.+|+....+-++
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~-t~~el~~~i~~l~~e~~~l~~kL~ 133 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEAELASLSSEP-TNEELREEIEELEEEIEELEEKLE 133 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444433322 122444445555555544444444
No 148
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=81.77 E-value=15 Score=31.77 Aligned_cols=58 Identities=24% Similarity=0.296 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHhhhhHHhhhc----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 99 ERDAEVRELYEKSLKLDAELRV----IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDL 156 (246)
Q Consensus 99 E~e~qiReL~ek~~KmEAelRa----~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL 156 (246)
+-..++..+.++..++++++.. +..++.++.++...+..|...=.++..-++.+..|+
T Consensus 92 el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~ 153 (194)
T PF08614_consen 92 ELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDEL 153 (194)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555443 333444444444444444444444444444444443
No 149
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=81.70 E-value=40 Score=30.48 Aligned_cols=62 Identities=16% Similarity=0.297 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHH
Q 025912 71 THVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIE 136 (246)
Q Consensus 71 tHvaLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q 136 (246)
....+.+++..++..+......+...+.+-+ ..+.|+++..-=..+ .+..+.++.++++++.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~-R~~~L~~~g~iS~~~---~d~~~~~~~~a~~~l~ 152 (327)
T TIGR02971 91 AAAKLFKDVAAQQATLNRLEAELETAQREVD-RYRSLFRDGAVSASD---LDSKALKLRTAEEELE 152 (327)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcCCccHHH---HHHHHHHHHHHHHHHH
Confidence 3344555555555555555554444443332 244455555444444 2444445555555333
No 150
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=81.69 E-value=11 Score=31.51 Aligned_cols=66 Identities=12% Similarity=0.207 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHH
Q 025912 68 LAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCV 140 (246)
Q Consensus 68 LAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a 140 (246)
+..+--.|-.+|+..-+.|..|-..++.+..-.|.|+ .++.+|+.|++. +..|+.++-.+..+|..
T Consensus 67 ~~~~~~elA~dIi~kakqIe~LIdsLPg~~~see~Q~----~~i~~L~~E~~~---~~~el~~~v~e~e~ll~ 132 (144)
T PF11221_consen 67 FEENIKELATDIIRKAKQIEYLIDSLPGIEVSEEEQL----KRIKELEEENEE---AEEELQEAVKEAEELLK 132 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTSSS-HHHHH----HHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHH----HHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 3444445667888888999999888888765555544 566677777443 33444444444444433
No 151
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=81.15 E-value=29 Score=28.41 Aligned_cols=33 Identities=24% Similarity=0.459 Sum_probs=15.0
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhh
Q 025912 155 DLAKARDESKDMAAIKAEIETERQEIHKGRAAI 187 (246)
Q Consensus 155 eL~r~~~d~qqip~l~aEid~lrqElqr~Raa~ 187 (246)
||.+=-.+++.|..++.++..++.++..+++..
T Consensus 50 El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~ 82 (132)
T PF07926_consen 50 ELVKHAEDIKELQQLREELQELQQEINELKAEA 82 (132)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444433
No 152
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=80.87 E-value=20 Score=26.55 Aligned_cols=82 Identities=20% Similarity=0.320 Sum_probs=37.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccchhH
Q 025912 122 ESMHAELDRVRADIEKLCVIKQEMIKDLNEIN--GDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHE 199 (246)
Q Consensus 122 e~lk~El~Q~r~e~q~L~a~RQELs~qvq~lt--qeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~E 199 (246)
.....++.+....+..|...+.++.....+.. -.+.....-...+..|...|+.+.+++..++.-++.=.+...+..-
T Consensus 8 ~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~ 87 (123)
T PF02050_consen 8 AEAQQELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARR 87 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666654444433 1112222333345555555555555555555555444443333333
Q ss_pred HHHH
Q 025912 200 QREI 203 (246)
Q Consensus 200 q~qa 203 (246)
..++
T Consensus 88 ~~k~ 91 (123)
T PF02050_consen 88 ERKK 91 (123)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 153
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=80.72 E-value=42 Score=30.12 Aligned_cols=147 Identities=20% Similarity=0.189 Sum_probs=86.4
Q ss_pred CchHhHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhch
Q 025912 42 PSLHHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVI 121 (246)
Q Consensus 42 p~~~~LEe~La~Q~~EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~ 121 (246)
|.|.-|+-.+.--..+++.......- -++-+...+.++.-|...+..+.. ++.....++.++..+ .
T Consensus 17 ~~~~~l~~~~e~~~~~L~~~~~~~~~-------~~~~~~~~e~~l~~L~~d~~~L~~----k~~~~~~~~~~l~~~---t 82 (264)
T PF06008_consen 17 PAPYKLLSSIEDLTNQLRSYRSKLNP-------QKQQLDPLEKELESLEQDVENLQE----KATKVSRKAQQLNNN---T 82 (264)
T ss_pred hhHHHHHHHHHHHHHHHHHHhccchh-------HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH---H
Confidence 44557777777777777776665442 233333333333333333322211 122233333333332 5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH-----Hhhhhhhhhhcccccc
Q 025912 122 ESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEI-----HKGRAAIECEKKNRAS 196 (246)
Q Consensus 122 e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqEl-----qr~Raa~EyEKK~~~e 196 (246)
+.+.....++..+|+++...=+++..++..+.+ .-.......++.+.+|++.|=+|+ ...|..-|.|++.--+
T Consensus 83 ~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~--~~~~~~~~~l~~~l~ea~~mL~emr~r~f~~~~~~Ae~El~~A~~ 160 (264)
T PF06008_consen 83 ERTLQRAQDLEQFIQNLQDNIQELIEQVESLNE--NGDQLPSEDLQRALAEAQRMLEEMRKRDFTPQRQNAEDELKEAED 160 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--ccCCCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Confidence 566666666666666666666666666666665 223346677888889999888888 4567777888887777
Q ss_pred hhHHHHHH
Q 025912 197 NHEQREIM 204 (246)
Q Consensus 197 ~~Eq~qaM 204 (246)
++...+.-
T Consensus 161 LL~~v~~~ 168 (264)
T PF06008_consen 161 LLSRVQKW 168 (264)
T ss_pred HHHHHHHH
Confidence 77766654
No 154
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=80.60 E-value=32 Score=31.49 Aligned_cols=46 Identities=24% Similarity=0.295 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhhhh----hhhHHHHHHHHHHHHHHHhhhhhhhhhccc
Q 025912 148 DLNEINGDLAKARDES----KDMAAIKAEIETERQEIHKGRAAIECEKKN 193 (246)
Q Consensus 148 qvq~ltqeL~r~~~d~----qqip~l~aEid~lrqElqr~Raa~EyEKK~ 193 (246)
+++...++|.+++.++ +|...+.-|.|.|-.|++++|..++-.-|.
T Consensus 166 el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~~~~k 215 (216)
T KOG1962|consen 166 ELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIESGGKK 215 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhccCCC
Confidence 3444444444444433 566777788888888999999888866543
No 155
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=80.48 E-value=16 Score=34.44 Aligned_cols=90 Identities=13% Similarity=0.155 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q 025912 99 ERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQ 178 (246)
Q Consensus 99 E~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrq 178 (246)
.+--++|..+.-++..|.. +.+.|+--..+..+|++|... +--+.++..|.+||.++.+++. .--|+|.++..
T Consensus 121 ~~~d~yR~~LK~IR~~E~s---l~p~R~~r~~l~d~I~kLk~k-~P~s~kl~~LeqELvraEae~l---vaEAqL~n~kR 193 (271)
T PF13805_consen 121 DRLDQYRIHLKSIRNREES---LQPSRDRRRKLQDEIAKLKYK-DPQSPKLVVLEQELVRAEAENL---VAEAQLSNIKR 193 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH--TTTTTHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HhHHHHHhHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHhh---HHHHHHHHhhH
Confidence 3444556666666666655 334444444555666665432 2234556666666655555443 12244555554
Q ss_pred HHHhhhhhhhhhcccccch
Q 025912 179 EIHKGRAAIECEKKNRASN 197 (246)
Q Consensus 179 Elqr~Raa~EyEKK~~~e~ 197 (246)
+ ..|.+|.+.=++-.|.
T Consensus 194 ~--~lKEa~~~~f~Al~E~ 210 (271)
T PF13805_consen 194 Q--KLKEAYSLKFDALIER 210 (271)
T ss_dssp H--HHHHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHHHHHH
Confidence 4 4555666554444443
No 156
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=80.40 E-value=22 Score=27.58 Aligned_cols=42 Identities=14% Similarity=0.313 Sum_probs=24.7
Q ss_pred hhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 113 KLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEING 154 (246)
Q Consensus 113 KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltq 154 (246)
.....+-.+-.+-.+..++..+++.|.+.|..++.++..+.+
T Consensus 23 ~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~ 64 (108)
T PF02403_consen 23 GDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKK 64 (108)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred CCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Confidence 344444444445555556666666666777777666666554
No 157
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=80.29 E-value=64 Score=34.27 Aligned_cols=117 Identities=20% Similarity=0.219 Sum_probs=63.1
Q ss_pred CchHhHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHh
Q 025912 42 PSLHHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQ----ELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAE 117 (246)
Q Consensus 42 p~~~~LEe~La~Q~~EiqrLl~dNqRLAatHvaLrQ----eL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAe 117 (246)
+.|++||.|+.+=..|+..|-.+=..|-..+..+.. +...-+.+++.|..-+... +.-.++-=+++..||+|
T Consensus 352 ~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~l----ek~~re~qeri~~LE~E 427 (717)
T PF09730_consen 352 NGLEILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSL----EKSSREDQERISELEKE 427 (717)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhhhhHHHHHHHHHH
Confidence 347899999999999998886666555544444433 2222233333333333322 11122223466666666
Q ss_pred hhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHH
Q 025912 118 LRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAA 168 (246)
Q Consensus 118 lRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~ 168 (246)
|++...+-.|-. + +|.++..||++=-..|.+=-...+.-+.-.|.
T Consensus 428 Lr~l~~~A~E~q---~---~LnsAQDELvtfSEeLAqLYHHVC~cNgeTPn 472 (717)
T PF09730_consen 428 LRALSKLAGESQ---G---SLNSAQDELVTFSEELAQLYHHVCMCNGETPN 472 (717)
T ss_pred HHHHHHHHHhHH---H---HHHHHHHHHHHHHHHHHHHHHHHHHccCCCCc
Confidence 666554444432 1 57777777766444444444445555555554
No 158
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=80.25 E-value=23 Score=34.84 Aligned_cols=38 Identities=18% Similarity=0.202 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025912 123 SMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKAR 160 (246)
Q Consensus 123 ~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~ 160 (246)
.+..++..++..+..|.....+|..+++.+.++|.++.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 135 FNGSEIERLLTEDREAERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33444444444444444444444444444444444443
No 159
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=80.01 E-value=56 Score=31.07 Aligned_cols=22 Identities=14% Similarity=0.294 Sum_probs=10.3
Q ss_pred HHHHHHhhHHHHHHHHHhhHHH
Q 025912 47 LEDRIAIQHSDIQSLLQDNQRL 68 (246)
Q Consensus 47 LEe~La~Q~~EiqrLl~dNqRL 68 (246)
++..+......+..+-..-.+|
T Consensus 94 ~~~~~~~~~~~l~~~~~q~~~l 115 (421)
T TIGR03794 94 LRERLQESYQKLTQLQEQLEEV 115 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555444444443333
No 160
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=80.00 E-value=42 Score=29.65 Aligned_cols=146 Identities=14% Similarity=0.189 Sum_probs=88.1
Q ss_pred hhhhhhhhHHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 025912 92 VAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKA 171 (246)
Q Consensus 92 ~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~a 171 (246)
+-.+|-.+.=.-|..|=+.+.-|-.. -+..+.++..+..|.++|..--+.+..++..|.++|.....|.+.+-.+++
T Consensus 17 YYndIT~~NL~lIksLKeei~emkk~---e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~ 93 (201)
T PF13851_consen 17 YYNDITLNNLELIKSLKEEIAEMKKK---EERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKA 93 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444333332 244556666777777777777777777788888888888888877777777
Q ss_pred HHHHHHHHHHhhhhhhhhhcccccchhHHHHHHHHhHHHHHHHHH---------------HHHHHHhhHhhhHhHH-Hhh
Q 025912 172 EIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIE---------------RLQAELANAEKRARAA-AAA 235 (246)
Q Consensus 172 Eid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEkNlisMarEvE---------------KLRaElanaEkRa~a~-~aa 235 (246)
-+..+.+++..++--.|-=.-.+......+..+...+.++..||. .|...+ |+|---. ..-
T Consensus 94 rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~l---E~keaqL~evl 170 (201)
T PF13851_consen 94 RLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQL---EKKEAQLNEVL 170 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 777777777776666555444455555556666666666666664 344444 5553222 234
Q ss_pred hhcCCCCC
Q 025912 236 AAVNPSIY 243 (246)
Q Consensus 236 aa~np~~~ 243 (246)
+++||.|-
T Consensus 171 ~~~nldp~ 178 (201)
T PF13851_consen 171 AAANLDPA 178 (201)
T ss_pred HHcCCCHH
Confidence 56777664
No 161
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.93 E-value=6.2 Score=38.54 Aligned_cols=87 Identities=23% Similarity=0.193 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hHHHHHHHHHHHHHHHhhhhhhhhhcccccchhHHHH
Q 025912 124 MHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKD-MAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQRE 202 (246)
Q Consensus 124 lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qq-ip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~q 202 (246)
+|+++ .++...+|-..++|-+.+.+.+..+|.|-..++.. .-.|++++++|.|+++.+-..||-=|+.-.|++|-.+
T Consensus 207 irasv--isa~~eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~ 284 (365)
T KOG2391|consen 207 IRASV--ISAVREKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAE 284 (365)
T ss_pred hhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc
Confidence 55666 55666677777777777777777777776666554 4567777777777777777777766655555444444
Q ss_pred HHHHhHHHHH
Q 025912 203 IMEKNIISVA 212 (246)
Q Consensus 203 aMEkNlisMa 212 (246)
..|-+=|.+|
T Consensus 285 n~~~~~~D~~ 294 (365)
T KOG2391|consen 285 NLEALDIDEA 294 (365)
T ss_pred cCcCCCchhh
Confidence 4333333343
No 162
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=79.70 E-value=44 Score=35.75 Aligned_cols=75 Identities=17% Similarity=0.366 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccchhHHHHHHHHhHHH------HHHHHHHH
Q 025912 145 MIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIIS------VAQQIERL 218 (246)
Q Consensus 145 Ls~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEkNlis------MarEvEKL 218 (246)
|+.++..|.+|+.+--+++-.-|.|+.-+|-|+.+. ++.+.- |.|.++.-+ .+..-|.++. |-.++|-|
T Consensus 509 L~eK~~kLk~Efnkkl~ea~n~p~lk~Kle~Lk~~~-~~~~~s--~g~~~a~~L--k~ei~kki~e~~~~~~~kek~ea~ 583 (762)
T PLN03229 509 LMEKIEKLKDEFNKRLSRAPNYLSLKYKLDMLNEFS-RAKALS--EKKSKAEKL--KAEINKKFKEVMDRPEIKEKMEAL 583 (762)
T ss_pred HHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHH-Hhhhhc--ccchhhhhh--hHHHHHHHHHhcccHHHHHHHHHH
Confidence 677788888888888888888888888888888777 444432 323233333 4567788888 88888888
Q ss_pred HHHHhh
Q 025912 219 QAELAN 224 (246)
Q Consensus 219 RaElan 224 (246)
.||+.+
T Consensus 584 ~aev~~ 589 (762)
T PLN03229 584 KAEVAS 589 (762)
T ss_pred HHHHHh
Confidence 888866
No 163
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=79.69 E-value=23 Score=26.32 Aligned_cols=95 Identities=19% Similarity=0.289 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 75 LKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEING 154 (246)
Q Consensus 75 LrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltq 154 (246)
.+++|+.+..++......+..+....+.....+.... . -..+...-....-+..+...|..+......+..++....+
T Consensus 3 a~~~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~-~-~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~ 80 (123)
T PF02050_consen 3 AEQELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQ-Q-GVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQARE 80 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------S-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666777777666666666666554433333322 2 2233334445555556666666666666666666666666
Q ss_pred HHHHHhhhhhhhHHHHH
Q 025912 155 DLAKARDESKDMAAIKA 171 (246)
Q Consensus 155 eL~r~~~d~qqip~l~a 171 (246)
.|..+..+.+.+--|+.
T Consensus 81 ~l~~a~~~~k~~e~L~e 97 (123)
T PF02050_consen 81 ELQEARRERKKLEKLKE 97 (123)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666666666665554
No 164
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=79.66 E-value=38 Score=28.92 Aligned_cols=14 Identities=29% Similarity=0.397 Sum_probs=8.1
Q ss_pred HHHHhhhhHHhhhc
Q 025912 107 LYEKSLKLDAELRV 120 (246)
Q Consensus 107 L~ek~~KmEAelRa 120 (246)
|-+++..||+||..
T Consensus 22 le~~v~~LEreLe~ 35 (140)
T PF10473_consen 22 LEDHVESLERELEM 35 (140)
T ss_pred HHHHHHHHHHHHHH
Confidence 55566666666543
No 165
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=79.61 E-value=12 Score=31.87 Aligned_cols=63 Identities=14% Similarity=0.296 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhh
Q 025912 125 HAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAI 187 (246)
Q Consensus 125 k~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~ 187 (246)
..++....+++.++...+..|.+|+....+.|..++..+.-+..|+++|+.|+.++...-..+
T Consensus 12 gk~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~ 74 (155)
T PF06810_consen 12 GKDIEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEY 74 (155)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555677777888899999999999999999999999999999999999999887544433
No 166
>PF14735 HAUS4: HAUS augmin-like complex subunit 4
Probab=79.58 E-value=51 Score=30.30 Aligned_cols=134 Identities=20% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--------hhhH-HHHHHHHHHHhhhhHHhhhchhhHH
Q 025912 55 HSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASV--------KAER-DAEVRELYEKSLKLDAELRVIESMH 125 (246)
Q Consensus 55 ~~EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~i--------~aE~-e~qiReL~ek~~KmEAelRa~e~lk 125 (246)
..|++++-..=..+-..-+.|.+-...--++|.+.-...-.+ +++- .....-|.-|+..|.+-||..+.-=
T Consensus 84 ~~ek~~~~~~k~~~~e~~~~l~~q~~~y~~vL~~cl~~L~~li~~~rl~~q~~~d~~~~~~L~~kceam~lKLr~~~~~i 163 (238)
T PF14735_consen 84 REEKQRLEKEKAQLRELLVLLERQFATYYQVLLQCLQLLQKLIEKHRLGTQAELDKIKAEYLEAKCEAMILKLRVLELEI 163 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhhh
Q 025912 126 AELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIE 188 (246)
Q Consensus 126 ~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~E 188 (246)
--=------|.-|...|+.|.+..+...+++.++......--.+-.|.+++-+|+.+++..||
T Consensus 164 L~~TYTpe~v~Al~~Ir~~L~~~~~~~e~~~~~a~~~L~~Ye~lg~~F~~ivreY~~l~~~ie 226 (238)
T PF14735_consen 164 LSDTYTPETVPALRKIRDHLEEAIEELEQELQKARQRLESYEGLGPEFEEIVREYTDLQQEIE 226 (238)
T ss_pred HHccCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHHHH
No 167
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=79.48 E-value=22 Score=35.98 Aligned_cols=42 Identities=19% Similarity=0.289 Sum_probs=30.0
Q ss_pred hHhHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 025912 44 LHHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQE 85 (246)
Q Consensus 44 ~~~LEe~La~Q~~EiqrLl~dNqRLAatHvaLrQeL~aaq~E 85 (246)
.+-|=-++..-+.+++.|+.||.+|.+..-.||+......+-
T Consensus 61 lrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~ 102 (472)
T TIGR03752 61 LRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQ 102 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 444555677778888889999988888888777655544443
No 168
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=79.28 E-value=11 Score=32.91 Aligned_cols=37 Identities=16% Similarity=0.274 Sum_probs=19.7
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhhhhhcccccchhHH
Q 025912 164 KDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQ 200 (246)
Q Consensus 164 qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq 200 (246)
..=-.+.++++.|+.++..+.+-++-=++...+.+++
T Consensus 103 ~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~ 139 (188)
T PF03962_consen 103 EEREELLEELEELKKELKELKKELEKYSENDPEKIEK 139 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 3344556666666666666666555333444444433
No 169
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=79.09 E-value=49 Score=29.91 Aligned_cols=40 Identities=23% Similarity=0.376 Sum_probs=26.1
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 025912 58 IQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVK 97 (246)
Q Consensus 58 iqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~i~ 97 (246)
|..|=.-|++|++..-.|++.+..+.+.=.+|..-|.+++
T Consensus 10 v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~ 49 (193)
T PF14662_consen 10 VEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLR 49 (193)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777777777777777777766666666555544
No 170
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=78.59 E-value=28 Score=32.74 Aligned_cols=70 Identities=13% Similarity=0.228 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhc
Q 025912 122 ESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEK 191 (246)
Q Consensus 122 e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEK 191 (246)
+.|-.=...+-.|..++...-..+..+...+.+|...++++..+.-.++.-+++|+.|+|+--..+--|-
T Consensus 25 ~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~ 94 (309)
T PF09728_consen 25 EALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEES 94 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444445555455556666777777777778888888888888888888887766555443
No 171
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=78.45 E-value=0.66 Score=47.41 Aligned_cols=62 Identities=15% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 025912 104 VRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKD 165 (246)
Q Consensus 104 iReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qq 165 (246)
...++++...+|.+++....++..+...+..|..|...+.+.+.++..+..|+.+....+..
T Consensus 341 N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~ 402 (713)
T PF05622_consen 341 NAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEA 402 (713)
T ss_dssp --------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777777888777777777777777777777777777777777666666666555443
No 172
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=78.26 E-value=32 Score=27.22 Aligned_cols=85 Identities=19% Similarity=0.275 Sum_probs=47.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhc
Q 025912 122 ESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAK----------ARDESKDMAAIKAEIETERQEIHKGRAAIECEK 191 (246)
Q Consensus 122 e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r----------~~~d~qqip~l~aEid~lrqElqr~Raa~EyEK 191 (246)
+..+.+|.++..+.+.....-+.|........+++.. ...=..-+..|...|+..++.+..++..++.-+
T Consensus 16 d~a~~~la~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~g~~~~~l~~~~~f~~~l~~~i~~q~~~l~~~~~~~e~~r 95 (141)
T TIGR02473 16 EQAKLELAKAQAEFERLETQLQQLIKYREEYEQQALEKVGAGTSALELSNYQRFIRQLDQRIQQQQQELALLQQEVEAKR 95 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555444444444444444444444443322 111223366777778888888888888877777
Q ss_pred ccccchhHHHHHHHH
Q 025912 192 KNRASNHEQREIMEK 206 (246)
Q Consensus 192 K~~~e~~Eq~qaMEk 206 (246)
+.-.+-.-..++|||
T Consensus 96 ~~l~~a~~~~k~lek 110 (141)
T TIGR02473 96 ERLLEARRELKALEK 110 (141)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666666554
No 173
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.20 E-value=96 Score=32.75 Aligned_cols=141 Identities=21% Similarity=0.325 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhhh------------------HHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHH
Q 025912 78 ELSLAEQELRHLSSVAASVKAE------------------RDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLC 139 (246)
Q Consensus 78 eL~aaq~El~~l~~~i~~i~aE------------------~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~ 139 (246)
++..+++||..++.+++..++- .-..=-..+.|+.+||+||+- ++.||--++.|-.+|.
T Consensus 58 eyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesLLqESaakE~~yl~kI~eleneLKq---~r~el~~~q~E~erl~ 134 (772)
T KOG0999|consen 58 EYDLARTELDQTKEALGQYRSQHKKVARDGEEREESLLQESAAKEEYYLQKILELENELKQ---LRQELTNVQEENERLE 134 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 4455666666666666554431 111223467899999999764 4555555555555555
Q ss_pred HHHHHHH-------HHHHHHHHHHH-------HHhhh-----------hhhhHHHH---HHHHHHHHHHHhhhhhhhhhc
Q 025912 140 VIKQEMI-------KDLNEINGDLA-------KARDE-----------SKDMAAIK---AEIETERQEIHKGRAAIECEK 191 (246)
Q Consensus 140 a~RQELs-------~qvq~ltqeL~-------r~~~d-----------~qqip~l~---aEid~lrqElqr~Raa~EyEK 191 (246)
..-+++- .+--.|..||. |+-+| -+++..|+ -|-++|++|+.|+--.+||=+
T Consensus 135 ~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln 214 (772)
T KOG0999|consen 135 KVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLN 214 (772)
T ss_pred HHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 4444432 22222222222 11111 23455554 488899999988887777744
Q ss_pred ccccchhH-----HHHHHHHhHHHHHHHHHH---HHHHH
Q 025912 192 KNRASNHE-----QREIMEKNIISVAQQIER---LQAEL 222 (246)
Q Consensus 192 K~~~e~~E-----q~qaMEkNlisMarEvEK---LRaEl 222 (246)
..--+ .. --+.||.-|-+.-.|=|. ||-||
T Consensus 215 ~q~ee-~~~Lk~IAekQlEEALeTlq~EReqk~alkkEL 252 (772)
T KOG0999|consen 215 SQLEE-AIRLKEIAEKQLEEALETLQQEREQKNALKKEL 252 (772)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 22111 11 113455555555555443 45554
No 174
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=78.20 E-value=68 Score=31.03 Aligned_cols=22 Identities=14% Similarity=0.379 Sum_probs=10.0
Q ss_pred HHhHHHHHHHHHHHHHHHhhHh
Q 025912 205 EKNIISVAQQIERLQAELANAE 226 (246)
Q Consensus 205 EkNlisMarEvEKLRaElanaE 226 (246)
...+...-.++..+++++..++
T Consensus 290 ~~~l~~~~~~l~~~~~~l~~a~ 311 (457)
T TIGR01000 290 KQEITDLNQKLLELESKIKSLK 311 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555444443
No 175
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=78.09 E-value=67 Score=30.85 Aligned_cols=123 Identities=20% Similarity=0.232 Sum_probs=67.3
Q ss_pred hHHHHHHhhHHHH----HHHHHhhHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Q 025912 46 HLEDRIAIQHSDI----QSLLQDNQRLAATHVALKQ-----------ELSLAEQELRHLSSVAASVKAERDAEVRELYEK 110 (246)
Q Consensus 46 ~LEe~La~Q~~Ei----qrLl~dNqRLAatHvaLrQ-----------eL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek 110 (246)
-+|-.|..|-..| +.|..+||||-..-.++|. ...+..+++.++.++-.. ---+||+|-+.
T Consensus 45 E~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeq----l~kyiReLEQa 120 (333)
T KOG1853|consen 45 EIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQ----LRKYIRELEQA 120 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHh
Confidence 4666666665554 5788999998876655543 333344444444333322 22356666666
Q ss_pred hhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHh
Q 025912 111 SLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHK 182 (246)
Q Consensus 111 ~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr 182 (246)
.--||---|+..-.-.++.| +|.- -..+..-|..||-.-.+-+-.+--|+.|--+|||||+-
T Consensus 121 NDdLErakRati~sleDfeq------rLnq----AIErnAfLESELdEke~llesvqRLkdEardlrqelav 182 (333)
T KOG1853|consen 121 NDDLERAKRATIYSLEDFEQ------RLNQ----AIERNAFLESELDEKEVLLESVQRLKDEARDLRQELAV 182 (333)
T ss_pred ccHHHHhhhhhhhhHHHHHH------HHHH----HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666555554333333322 1111 12233445555555555555666677888888888863
No 176
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=77.99 E-value=28 Score=26.38 Aligned_cols=20 Identities=35% Similarity=0.513 Sum_probs=15.8
Q ss_pred hhhHHHHHHHHHHHhhhhHH
Q 025912 97 KAERDAEVRELYEKSLKLDA 116 (246)
Q Consensus 97 ~aE~e~qiReL~ek~~KmEA 116 (246)
=+|+|.+|-.|++-+-+|..
T Consensus 7 l~EKDe~Ia~L~eEGekLSk 26 (74)
T PF12329_consen 7 LAEKDEQIAQLMEEGEKLSK 26 (74)
T ss_pred HHhHHHHHHHHHHHHHHHHH
Confidence 36899999999988777754
No 177
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=77.81 E-value=49 Score=29.16 Aligned_cols=141 Identities=12% Similarity=0.189 Sum_probs=78.5
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhh----chhhHHHHHHHHH
Q 025912 58 IQSLLQDNQRLAATHVALKQELS-LAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELR----VIESMHAELDRVR 132 (246)
Q Consensus 58 iqrLl~dNqRLAatHvaLrQeL~-aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelR----a~e~lk~El~Q~r 132 (246)
+..++.+..++|..|..+-+.|. ..-..|..+..-.. .....+.+-+.|+..+.. .++-.|..-.++-
T Consensus 62 ~~~i~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~~~~-------~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~c 134 (236)
T cd07651 62 LDTLRLETESMAKSHLKFAKQIRQDLEEKLAAFASSYT-------QKRKKIQSHMEKLLKKKQDQEKYLEKAREKYEADC 134 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999886 45556655433222 223333333333333321 2233333333322
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccchhHHHHHHHHhH
Q 025912 133 ADIEKLCVIKQEMI----KDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNI 208 (246)
Q Consensus 133 ~e~q~L~a~RQELs----~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEkNl 208 (246)
.+ +...+.... .++..+..-|.++..++ -..+.+....-+++...+.- |+.+- .+.+...|.||.-=
T Consensus 135 ~~---~e~~~~~~~~~~~ke~eK~~~k~~k~~~~~---~~~~~~Y~~~v~~~~~~~~~--~~~~~-~~~~~~~Q~lEe~R 205 (236)
T cd07651 135 SK---INSYTLQSQLTWGKELEKNNAKLNKAQSSI---NSSRRDYQNAVKALRELNEI--WNREW-KAALDDFQDLEEER 205 (236)
T ss_pred Hh---HHHHHHHHcccCcchHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--HHHHH-HHHHHHHHHHHHHH
Confidence 22 222222211 22333333333333332 34567777777788888774 56555 68888889988877
Q ss_pred HHHHHH
Q 025912 209 ISVAQQ 214 (246)
Q Consensus 209 isMarE 214 (246)
|.+-++
T Consensus 206 i~~lk~ 211 (236)
T cd07651 206 IQFLKS 211 (236)
T ss_pred HHHHHH
Confidence 776665
No 178
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=77.74 E-value=1.7 Score=38.03 Aligned_cols=35 Identities=31% Similarity=0.444 Sum_probs=14.5
Q ss_pred HhHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 025912 45 HHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQ 84 (246)
Q Consensus 45 ~~LEe~La~Q~~EiqrLl~dNqRLAatHvaLrQeL~aaq~ 84 (246)
.+||.+| .|-..|...+|||-+.---||||| ..++
T Consensus 17 alLE~EL----dEKE~L~~~~QRLkDE~RDLKqEl-~V~e 51 (166)
T PF04880_consen 17 ALLESEL----DEKENLREEVQRLKDELRDLKQEL-IVQE 51 (166)
T ss_dssp HHHHHHH----HHHHHHHHCH-------------------
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 3788888 788899999999988888888888 4443
No 179
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=77.63 E-value=51 Score=29.24 Aligned_cols=97 Identities=20% Similarity=0.288 Sum_probs=64.1
Q ss_pred HHhhhhHHhhh-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH-----HHHHHHHHHHh
Q 025912 109 EKSLKLDAELR-VIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKA-----EIETERQEIHK 182 (246)
Q Consensus 109 ek~~KmEAelR-a~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~a-----Eid~lrqElqr 182 (246)
++.-.=|++|= -+.....|+..++....+....-.++..++.....+|.+....++.+-.|.. |.+.|.+++..
T Consensus 50 ~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~ 129 (194)
T PF15619_consen 50 QKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQ 129 (194)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHH
Confidence 33333355543 2356667777788887887777788888888888888888888777666544 67788888888
Q ss_pred hhhhhhhhcccccchhHHHHHHH
Q 025912 183 GRAAIECEKKNRASNHEQREIME 205 (246)
Q Consensus 183 ~Raa~EyEKK~~~e~~Eq~qaME 205 (246)
+...++-..+...+.--|.....
T Consensus 130 ~~~~l~~~~~ki~~Lek~leL~~ 152 (194)
T PF15619_consen 130 LEQKLQEKEKKIQELEKQLELEN 152 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 77777655544444333333333
No 180
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=77.46 E-value=1.4e+02 Score=34.26 Aligned_cols=43 Identities=23% Similarity=0.363 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhHH---HHHHHHHHHhhhhHH
Q 025912 74 ALKQELSLAEQELRHLSSVAASVKAERD---AEVRELYEKSLKLDA 116 (246)
Q Consensus 74 aLrQeL~aaq~El~~l~~~i~~i~aE~e---~qiReL~ek~~KmEA 116 (246)
+-++.....-+|++-|-..|++..+..+ .+|++|.++.++||-
T Consensus 1461 as~~q~~~s~~el~~Li~~v~~Flt~~~adp~si~~vA~~vL~l~l 1506 (1758)
T KOG0994|consen 1461 ASRSQMEESNRELRNLIQQVRDFLTQPDADPDSIEEVAEEVLALEL 1506 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhccC
Confidence 4456666777788887777777765543 367777777777763
No 181
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=77.10 E-value=86 Score=32.44 Aligned_cols=145 Identities=17% Similarity=0.279 Sum_probs=71.7
Q ss_pred HHHHHHHHHHH-HHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 74 ALKQELSLAEQ-ELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEI 152 (246)
Q Consensus 74 aLrQeL~aaq~-El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~l 152 (246)
++-|||.+.=. =.+.+...|+.++++.|- +-+.+.-++||..-+...+.=..+ +..|--++.+.-.-|.++.+.-
T Consensus 253 ~~e~Elk~~f~~~~~~i~~~i~~lk~~n~~-l~e~i~ea~k~s~~i~~l~ek~r~---l~~D~nk~~~~~~~mk~K~~~~ 328 (622)
T COG5185 253 PSEQELKLGFEKFVHIINTDIANLKTQNDN-LYEKIQEAMKISQKIKTLREKWRA---LKSDSNKYENYVNAMKQKSQEW 328 (622)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHhc
Confidence 45566655433 345667777777776653 222333334444443333221111 2233334444333333333333
Q ss_pred HHHHHHHhhhh----hhhHHHHHHHHHHHHHHHhhhhhhhhhcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhHh
Q 025912 153 NGDLAKARDES----KDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANAE 226 (246)
Q Consensus 153 tqeL~r~~~d~----qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEkNlisMarEvEKLRaElanaE 226 (246)
+.-+.+++++. .+|-+|++-+|+|+.-+-.-+-.+|-=++-|.| +..+-+||--|--+.+||+.++-..+
T Consensus 329 ~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~E----re~L~reL~~i~~~~~~L~k~V~~~~ 402 (622)
T COG5185 329 PGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQE----REKLTRELDKINIQSDKLTKSVKSRK 402 (622)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHH----HHHHHHHHHHhcchHHHHHHHHHhHH
Confidence 33333333332 235566777777776665544433322222222 23456777778888888888775443
No 182
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=76.97 E-value=1e+02 Score=32.48 Aligned_cols=75 Identities=21% Similarity=0.377 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhc----ccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhH
Q 025912 150 NEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEK----KNRASNHEQREIMEKNIISVAQQIERLQAELANA 225 (246)
Q Consensus 150 q~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEK----K~~~e~~Eq~qaMEkNlisMarEvEKLRaElana 225 (246)
..+.+||.+..... ..|++=|+.++.-+.+.+.-++..+ +...=.--|++.+...|-.++.+|..|-.++-+-
T Consensus 635 r~~~~EL~~~~~~l---~~l~~si~~lk~k~~~Q~~~i~~~~~~~~~s~~L~~~Q~~~I~~iL~~~~~~I~~~v~~ik~i 711 (717)
T PF10168_consen 635 REFKKELERMKDQL---QDLKASIEQLKKKLDYQQRQIESQKSPKKKSIVLSESQKRTIKEILKQQGEEIDELVKQIKNI 711 (717)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhccccccCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555433 3355555555555554444444222 2223345799999999999999999999988665
Q ss_pred hh
Q 025912 226 EK 227 (246)
Q Consensus 226 Ek 227 (246)
.+
T Consensus 712 ~~ 713 (717)
T PF10168_consen 712 KK 713 (717)
T ss_pred HH
Confidence 44
No 183
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=76.43 E-value=1.1e+02 Score=32.46 Aligned_cols=165 Identities=17% Similarity=0.245 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHH
Q 025912 66 QRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEM 145 (246)
Q Consensus 66 qRLAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQEL 145 (246)
..+...+-.+...+...+..+.+|......+.-....... .......++..+.....+...+.....+...|...-.+|
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l 348 (908)
T COG0419 270 KIREEELRELERLLEELEEKIERLEELEREIEELEEELEG-LRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEEL 348 (908)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566777778888888888887777766655544444 222222222222222222222222222222222222222
Q ss_pred HHHHHHHHHHHHHHhhhhhh-hHHHHHHHH-------HHHHHHHhhhhhhhhhcccccchhHHHHHHHHhHHHHHHHHHH
Q 025912 146 IKDLNEINGDLAKARDESKD-MAAIKAEIE-------TERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIER 217 (246)
Q Consensus 146 s~qvq~ltqeL~r~~~d~qq-ip~l~aEid-------~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEkNlisMarEvEK 217 (246)
...-......+.+.....+. +-.+..++. .+..+++...+-...-.....+..++....++++-..-+++++
T Consensus 349 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~ 428 (908)
T COG0419 349 AEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEE 428 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222222211111 222222222 2334444444444555555566677777777788888888888
Q ss_pred HHHHHhhHhhhHhH
Q 025912 218 LQAELANAEKRARA 231 (246)
Q Consensus 218 LRaElanaEkRa~a 231 (246)
++..+.+.+..-..
T Consensus 429 ~~~~~~~~~~~~~~ 442 (908)
T COG0419 429 LEEEIKKLEEQINQ 442 (908)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888777666444
No 184
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=76.36 E-value=92 Score=31.57 Aligned_cols=95 Identities=9% Similarity=0.231 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hhh-----hHHHHHHHHHHHHHHHhhhhhhhhhcccccchhHHHHHH
Q 025912 135 IEKLCVIKQEMIKDLNEINGDLAKARDE-----SKD-----MAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIM 204 (246)
Q Consensus 135 ~q~L~a~RQELs~qvq~ltqeL~r~~~d-----~qq-----ip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaM 204 (246)
.+.|...++.|+.+.+.|..++=..++. +++ +--|+..|++.++.+. ..+..+.+.+..+-+|.+.|
T Consensus 101 ~~~l~~~~~~L~~~F~~LA~~ile~k~~~f~~~~~~~l~~ll~Pl~e~l~~f~~~v~---~~~~~~~~~~~~L~~qi~~L 177 (475)
T PRK10361 101 IRQMINSEQRLSEQFENLANRIFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRRQVQ---DSFGKEAQERHTLAHEIRNL 177 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 3457777888888888887765433322 111 3455666666665554 34445778888999999888
Q ss_pred HHhHHHHHHHHHHHHHHHhh-Hhhh-HhHH
Q 025912 205 EKNIISVAQQIERLQAELAN-AEKR-ARAA 232 (246)
Q Consensus 205 EkNlisMarEvEKLRaElan-aEkR-a~a~ 232 (246)
-.--..|..|..+|-.=|-. .-.| .||=
T Consensus 178 ~~~n~~i~~ea~nLt~ALkgd~K~rG~WGE 207 (475)
T PRK10361 178 QQLNAQMAQEAINLTRALKGDNKTQGNWGE 207 (475)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCcCcchHH
Confidence 77778899999988777643 2334 4553
No 185
>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.
Probab=76.20 E-value=4.6 Score=32.08 Aligned_cols=47 Identities=13% Similarity=0.340 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhh
Q 025912 144 EMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECE 190 (246)
Q Consensus 144 ELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyE 190 (246)
.+.++++.+.+++...+.-.+++|.++++++.+++++......+=.+
T Consensus 3 ~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~lP~~ 49 (144)
T PF04350_consen 3 TLQAQIQQLQQELAQLKEKVANLEELKKQLEQLEQQLEELLKKLPAE 49 (144)
T ss_dssp ---------HHHHHHTGGG-SSHHHHHHHHHHHHHHHHHHHHCTTGG
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 45677888889999999999999999999999999998887766543
No 186
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=76.20 E-value=36 Score=28.19 Aligned_cols=53 Identities=15% Similarity=0.351 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Q 025912 125 HAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEI 180 (246)
Q Consensus 125 k~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqEl 180 (246)
-.++...-.....|...|.+|.+.++.|.++ ..+-+|.+..|.+.|+.++..+
T Consensus 22 e~slE~~K~S~~eL~kqkd~L~~~l~~L~~q---~~s~~qr~~eLqaki~ea~~~l 74 (107)
T PF09304_consen 22 ERSLEDEKTSQGELAKQKDQLRNALQSLQAQ---NASRNQRIAELQAKIDEARRNL 74 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566667788888899888888877 5566777888888777765543
No 187
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=76.16 E-value=60 Score=29.36 Aligned_cols=41 Identities=24% Similarity=0.328 Sum_probs=28.6
Q ss_pred HHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 025912 47 LEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELR 87 (246)
Q Consensus 47 LEe~La~Q~~EiqrLl~dNqRLAatHvaLrQeL~aaq~El~ 87 (246)
|.+.-+.-++.|...---|.+|+...-.|+..+-.+|+=++
T Consensus 20 L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~ 60 (193)
T PF14662_consen 20 LADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQ 60 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556667777777788888888888888777664443
No 188
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=75.45 E-value=20 Score=26.56 Aligned_cols=23 Identities=13% Similarity=0.300 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025912 136 EKLCVIKQEMIKDLNEINGDLAK 158 (246)
Q Consensus 136 q~L~a~RQELs~qvq~ltqeL~r 158 (246)
.+|...=|.|.++|..|..|+.-
T Consensus 6 d~Ls~dVq~L~~kvdqLs~dv~~ 28 (56)
T PF04728_consen 6 DQLSSDVQTLNSKVDQLSSDVNA 28 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555555554433
No 189
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.40 E-value=23 Score=33.93 Aligned_cols=76 Identities=17% Similarity=0.279 Sum_probs=58.6
Q ss_pred hhHHhhhchhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhh----hhhhHHHHHHHHHHHHHHHhhhhhh
Q 025912 113 KLDAELRVIESMHAELDRVRADIE-KLCVIKQEMIKDLNEINGDLAKARDE----SKDMAAIKAEIETERQEIHKGRAAI 187 (246)
Q Consensus 113 KmEAelRa~e~lk~El~Q~r~e~q-~L~a~RQELs~qvq~ltqeL~r~~~d----~qqip~l~aEid~lrqElqr~Raa~ 187 (246)
|+|++-++.+..-.++.+.-..++ .+...+|.|+.|-+.+..+|..+..- ...+-.+..||..+.+++-..+...
T Consensus 119 k~e~~k~~Ld~~~~~~~~~~~~l~~~va~v~q~~~~qq~Els~~L~~l~~~~~~~s~~~~k~esei~~Ik~lvln~~~f~ 198 (300)
T KOG2629|consen 119 KLEADKRQLDDQFDKAAKSLNALMDEVAQVSQLLATQQSELSRALASLKNTLVQLSRNIEKLESEINTIKQLVLNMSNFA 198 (300)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcccccC
Confidence 677777777777767666655544 45667888888888888888887776 6778899999999999998776654
Q ss_pred h
Q 025912 188 E 188 (246)
Q Consensus 188 E 188 (246)
.
T Consensus 199 ~ 199 (300)
T KOG2629|consen 199 P 199 (300)
T ss_pred C
Confidence 3
No 190
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=75.26 E-value=1.1e+02 Score=31.77 Aligned_cols=44 Identities=20% Similarity=0.324 Sum_probs=23.2
Q ss_pred hHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 46 HLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHL 89 (246)
Q Consensus 46 ~LEe~La~Q~~EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~l 89 (246)
-.+++...+..|++.|=..=+.|......+..++..-+.++..+
T Consensus 318 ~~~~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~ 361 (594)
T PF05667_consen 318 TEEDEQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQL 361 (594)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666665554444444444444444444444443
No 191
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=74.31 E-value=58 Score=28.26 Aligned_cols=118 Identities=12% Similarity=0.190 Sum_probs=76.2
Q ss_pred CchHhHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhhHHHHHHHHHHHhhhhHHhhhc
Q 025912 42 PSLHHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSV-AASVKAERDAEVRELYEKSLKLDAELRV 120 (246)
Q Consensus 42 p~~~~LEe~La~Q~~EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~-i~~i~aE~e~qiReL~ek~~KmEAelRa 120 (246)
|...+|++|=..-..+|..--..+.....---...++|..|+.|.+.+..- ..++.+|- ..+..++|++|+.
T Consensus 34 pI~~iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~~-------~~~~~~~ea~L~~ 106 (155)
T PRK06569 34 KAEEIFNNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLESEF-------LIKKKNLEQDLKN 106 (155)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 345577777666666666555556666666666777788888877776444 55555554 4566677888764
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q 025912 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETER 177 (246)
Q Consensus 121 ~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lr 177 (246)
.+..|+.-.-..+. .-|-+.+.++-.|+.++. .++...++.++-|+
T Consensus 107 --~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~i~------~k~~~~~~~~~~~~ 152 (155)
T PRK06569 107 --SINQNIEDINLAAK---QFRTNKSEAIIKLAVNII------EKIAGTKADMNLLQ 152 (155)
T ss_pred --HHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHH------HHHhCccccHHHHh
Confidence 45556655555555 445667777777887776 56666666666554
No 192
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=74.24 E-value=40 Score=26.41 Aligned_cols=68 Identities=25% Similarity=0.351 Sum_probs=42.4
Q ss_pred HHHHHHhhhhhhhh------HHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 86 LRHLSSVAASVKAE------RDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDL 156 (246)
Q Consensus 86 l~~l~~~i~~i~aE------~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL 156 (246)
+.+|...|..+..- ++....++-+.+.+|.+| ..-|-.||.++.+.+.+|.....|++..+......+
T Consensus 10 l~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~d---r~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~I 83 (89)
T PF13747_consen 10 LTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDAD---RSRLAQELDQAEARANRLEEANREVSRRLDSAIETI 83 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhh---HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555544332 222224444444445444 455777888888888999988888888887766554
No 193
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=74.02 E-value=12 Score=39.34 Aligned_cols=50 Identities=26% Similarity=0.395 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhh
Q 025912 128 LDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAI 187 (246)
Q Consensus 128 l~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~ 187 (246)
+.-|+-|.-+|.+-||||.+++..+++ +|.+++.+|..-++||.++...|
T Consensus 88 ~~sVs~EL~ele~krqel~seI~~~n~----------kiEelk~~i~~~q~eL~~Lk~~i 137 (907)
T KOG2264|consen 88 LASVSLELTELEVKRQELNSEIEEINT----------KIEELKRLIPQKQLELSALKGEI 137 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHH----------HHHHHHHHHHHhHHHHHHHHhHH
Confidence 334444555666677777776665543 34444444444445544444333
No 194
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=73.28 E-value=72 Score=28.87 Aligned_cols=84 Identities=18% Similarity=0.260 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 76 KQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIE----SMHAELDRVRADIEKLCVIKQEMIKDLNE 151 (246)
Q Consensus 76 rQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e----~lk~El~Q~r~e~q~L~a~RQELs~qvq~ 151 (246)
+|-..-+.-||++...-..+..+|+-+... =++...|.+||...- .+-..-.+++.|++.|.+.|+..-.|+..
T Consensus 95 ~Qt~~LA~~eirR~~LeAQka~~eR~ia~~--~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~ 172 (192)
T PF11180_consen 95 QQTARLADVEIRRAQLEAQKAQLERLIAES--EARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQ 172 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666778888877666666666544333 355666666665542 33344466777777777777777777776
Q ss_pred HHHHHHHHhh
Q 025912 152 INGDLAKARD 161 (246)
Q Consensus 152 ltqeL~r~~~ 161 (246)
+...+..++.
T Consensus 173 lQ~qv~~Lq~ 182 (192)
T PF11180_consen 173 LQRQVRQLQR 182 (192)
T ss_pred HHHHHHHHHH
Confidence 6665555443
No 195
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=73.26 E-value=1.1e+02 Score=30.85 Aligned_cols=118 Identities=24% Similarity=0.326 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHh-hhc-hhhHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 025912 76 KQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAE-LRV-IESMHAELDR----VRADIEKLCVIKQEMIKDL 149 (246)
Q Consensus 76 rQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAe-lRa-~e~lk~El~Q----~r~e~q~L~a~RQELs~qv 149 (246)
.+||...++||..|+++-.+.+++-..-|-.+.+|+.++-.= +-+ .++=|+=+.. +-.+.++|.+-=.+|..-|
T Consensus 154 ~~el~~lrrdLavlRQ~~~~~~~~~~~sm~~i~~k~~~~k~~~~~~~~~s~R~y~e~~k~kL~~~Sd~lltkVDDLQD~v 233 (426)
T smart00806 154 RAELKSLQRELAVLRQTHNSFFTEIKESIKDILEKIDKFKSSSLSASGSSNRAYVESSKKKLSEDSDSLLTKVDDLQDII 233 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcchHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 367777777777777777777777777777888887776431 111 1222332222 2345556666666666666
Q ss_pred HHHHHHHHH--HhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhccc
Q 025912 150 NEINGDLAK--ARDESKDMAAIKAEIETERQEIHKGRAAIECEKKN 193 (246)
Q Consensus 150 q~ltqeL~r--~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~ 193 (246)
..|.+|+.. .+.-.+|+-.+.-||+...+||+..-.-|.-||-.
T Consensus 234 E~LRkDV~~RgVRp~~~qLe~v~kdi~~a~keL~~m~~~i~~eKP~ 279 (426)
T smart00806 234 EALRKDVAQRGVRPSKKQLETVQKELETARKELKKMEEYIDIEKPI 279 (426)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcChH
Confidence 677777664 56677889999999999999999999999988843
No 196
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=73.23 E-value=1e+02 Score=32.96 Aligned_cols=108 Identities=21% Similarity=0.283 Sum_probs=74.3
Q ss_pred HHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh------------------hhhH
Q 025912 106 ELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDES------------------KDMA 167 (246)
Q Consensus 106 eL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~------------------qqip 167 (246)
++.++.-+|+++ .+.+..++.....+++.+...-+|+...+..|..+|.-++.-+ .+++
T Consensus 593 el~eelE~le~e---K~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~ 669 (769)
T PF05911_consen 593 ELEEELEKLESE---KEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLK 669 (769)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 344444444444 2444445555666666666666777777777777766443221 1345
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhcccccchhHHHHHHHHhHHHHHHHHH
Q 025912 168 AIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIE 216 (246)
Q Consensus 168 ~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEkNlisMarEvE 216 (246)
.+.+|+..++.-+..+-.-|+.||....|+.-.-+.+|-.|-++.++..
T Consensus 670 ~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~~~~ 718 (769)
T PF05911_consen 670 DLEAEAEELQSKISSLEEELEKERALSEELEAKCRELEEELERMKKEES 718 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhcccc
Confidence 6688999999999999999999999998888888888888888877654
No 197
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=72.56 E-value=76 Score=28.97 Aligned_cols=61 Identities=21% Similarity=0.335 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-----------hHHHHHHHHHHHHHHHhhhhh
Q 025912 126 AELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKD-----------MAAIKAEIETERQEIHKGRAA 186 (246)
Q Consensus 126 ~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qq-----------ip~l~aEid~lrqElqr~Raa 186 (246)
.=|...+.|...|...|-..+.+++.+.+|+..+-+..++ +-.+..|+..|+.++-..|..
T Consensus 32 ~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355566777777777777777777777776654433332 333344444444444444444
No 198
>PF05082 Rop-like: Rop-like; InterPro: IPR007774 This family contains several uncharacterised bacterial proteins. These proteins are found in nitrogen fixation operons, so are likely to play a role in this process.; PDB: 3CSX_A 2JS5_B.
Probab=72.46 E-value=40 Score=25.66 Aligned_cols=59 Identities=12% Similarity=0.313 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhh
Q 025912 126 AELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAI 187 (246)
Q Consensus 126 ~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~ 187 (246)
.|+.-+..+|+||.+.=-++..+++.|..| +-.+-++||.+-...-....++..+|..+
T Consensus 2 ~d~~eLk~evkKL~~~A~~~kmdLHDLaEd---LP~~w~~i~~vA~~ty~a~~~l~~ak~~L 60 (66)
T PF05082_consen 2 SDIEELKKEVKKLNRKATQAKMDLHDLAED---LPTNWEEIPEVAQKTYDAYAELDEAKAEL 60 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---TTTTGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667888899999999999999999999 78888999998887777777777777654
No 199
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=72.12 E-value=1.5e+02 Score=31.95 Aligned_cols=157 Identities=16% Similarity=0.276 Sum_probs=94.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHH
Q 025912 60 SLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLC 139 (246)
Q Consensus 60 rLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~ 139 (246)
+++..=+.|-.+-..||-+|...+.|+..-..-+..---..|.-.|.+.--..+.+-.+.. +...+.-+|..|..-.
T Consensus 531 ~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~---lenk~~~LrKqvEnk~ 607 (786)
T PF05483_consen 531 KMLKQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMKI---LENKCNNLRKQVENKN 607 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHH---HHHHHHHHHHHHHHHH
Confidence 3433444455555566788888888877765544443344555555555555555555433 3334444444444433
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccchhHHHHHHHHhHHHHHHHHHHHH
Q 025912 140 VIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQ 219 (246)
Q Consensus 140 a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEkNlisMarEvEKLR 219 (246)
..=.+|-.+-..|.+. ..++..|+..+---|..|+-|+..+.--|+-+-..+..-+|-..+-|-||. -||+|++
T Consensus 608 K~ieeLqqeNk~LKKk---~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~~keie~K~~~e~~L~---~EveK~k 681 (786)
T PF05483_consen 608 KNIEELQQENKALKKK---ITAESKQSNVYEIKVNKLQEELENLKKKHEEETDKYQKEIESKSISEEELL---GEVEKAK 681 (786)
T ss_pred hHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHH---HHHHHHH
Confidence 3333333333333333 456777777777778888888888888888887777777887777777765 4788877
Q ss_pred HHHhhH
Q 025912 220 AELANA 225 (246)
Q Consensus 220 aElana 225 (246)
.-..-|
T Consensus 682 ~~a~EA 687 (786)
T PF05483_consen 682 LTADEA 687 (786)
T ss_pred HHHHHH
Confidence 655433
No 200
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=71.97 E-value=1.2e+02 Score=30.69 Aligned_cols=104 Identities=14% Similarity=0.174 Sum_probs=65.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh----------------hHH----HHHHHHHHHHHHH
Q 025912 122 ESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKD----------------MAA----IKAEIETERQEIH 181 (246)
Q Consensus 122 e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qq----------------ip~----l~aEid~lrqElq 181 (246)
+.++.++..+...+..+...+.++...++.+.++-..++...+. +|. ...-+..+..++.
T Consensus 379 sel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~~~~~~i~ 458 (569)
T PRK04778 379 SELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLEMFFEVSDEIE 458 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHH
Confidence 45556666666666666666666666666666665555433333 222 2233456677888
Q ss_pred hhhhhhhhhcccccchhH-HHHHHHHhHHHHHHHHHHHHHHHhhHh
Q 025912 182 KGRAAIECEKKNRASNHE-QREIMEKNIISVAQQIERLQAELANAE 226 (246)
Q Consensus 182 r~Raa~EyEKK~~~e~~E-q~qaMEkNlisMarEvEKLRaElanaE 226 (246)
++...++. ..-|++-++ +....+.-+-.+..+.+-|......++
T Consensus 459 ~l~~~L~~-g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE 503 (569)
T PRK04778 459 ALAEELEE-KPINMEAVNRLLEEATEDVETLEEETEELVENATLTE 503 (569)
T ss_pred HHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888 778888887 777766666666666666655554444
No 201
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=71.94 E-value=37 Score=33.08 Aligned_cols=32 Identities=19% Similarity=0.378 Sum_probs=18.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEI 152 (246)
Q Consensus 121 ~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~l 152 (246)
+-.+-.+..++..+++.|.+.|..++.++..+
T Consensus 32 i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~ 63 (418)
T TIGR00414 32 LIALDDERKKLLSEIEELQAKRNELSKQIGKA 63 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555666666666666666666553
No 202
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=71.27 E-value=45 Score=30.66 Aligned_cols=46 Identities=20% Similarity=0.286 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhhhcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhH
Q 025912 166 MAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANA 225 (246)
Q Consensus 166 ip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEkNlisMarEvEKLRaElana 225 (246)
+|.+.+..|..|+ -|.|+=++.......+..+-+||++|+++=.+-
T Consensus 81 LpIVtsQRDRFR~--------------Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kL 126 (248)
T PF08172_consen 81 LPIVTSQRDRFRQ--------------RNAELEEELRKQQQTISSLRREVESLRADNVKL 126 (248)
T ss_pred HHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777765 355666788888888999999999999985444
No 203
>PRK11020 hypothetical protein; Provisional
Probab=71.18 E-value=21 Score=29.99 Aligned_cols=56 Identities=20% Similarity=0.277 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhh
Q 025912 123 SMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECE 190 (246)
Q Consensus 123 ~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyE 190 (246)
.+|+|+++++- +|-..|--|.+ ...++|.--|..+..|++.|-.||.+++.--.|+
T Consensus 2 ~~K~Eiq~L~d---rLD~~~~Klaa---------a~~rgd~~~i~qf~~E~~~l~k~I~~lk~~~~~~ 57 (118)
T PRK11020 2 VEKNEIKRLSD---RLDAIRHKLAA---------ASLRGDAEKYAQFEKEKATLEAEIARLKEVQSQK 57 (118)
T ss_pred cHHHHHHHHHH---HHHHHHHHHHH---------HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777766 44444444443 3467888899999999999999999998765554
No 204
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=70.90 E-value=1.5e+02 Score=31.71 Aligned_cols=67 Identities=21% Similarity=0.277 Sum_probs=39.2
Q ss_pred hhhhhhhhHHHHHHHHHHHhh--------hhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025912 92 VAASVKAERDAEVRELYEKSL--------KLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARD 161 (246)
Q Consensus 92 ~i~~i~aE~e~qiReL~ek~~--------KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~ 161 (246)
.+..+|-|.|..|.+.+-+.. .||+. +..+.+.|..+.+|.-.|...-|+-..-+..|+....++-+
T Consensus 60 qlr~~ree~eq~i~~~~~~~s~e~e~~~~~le~~---l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~ 134 (769)
T PF05911_consen 60 QLRQVREEQEQKIHEAVAKKSKEWEKIKSELEAK---LAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEA 134 (769)
T ss_pred HHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455677788888877765431 33333 24445566666666666666666655555555555444443
No 205
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=70.71 E-value=48 Score=25.83 Aligned_cols=44 Identities=18% Similarity=0.314 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhh
Q 025912 143 QEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAA 186 (246)
Q Consensus 143 QELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa 186 (246)
++|..+.+.+.+++...+....++-....|++.+..++..+-.+
T Consensus 2 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~ 45 (129)
T cd00890 2 QELAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKA 45 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34555566666666666666666666666666666666666533
No 206
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=70.44 E-value=60 Score=34.13 Aligned_cols=58 Identities=16% Similarity=0.231 Sum_probs=32.8
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccchhHHHHHHHHhHH-HHHHHHHHHHHH
Q 025912 163 SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNII-SVAQQIERLQAE 221 (246)
Q Consensus 163 ~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEkNli-sMarEvEKLRaE 221 (246)
...+-++.-+|+.|+.+|+.-...+|-= +.....+.+++.||-.=- .=.+.|+||+-+
T Consensus 473 ~rei~~~~~~I~~L~~~L~e~~~~ve~L-~~~l~~l~k~~~lE~sG~g~pvk~ve~~t~~ 531 (652)
T COG2433 473 DREIRARDRRIERLEKELEEKKKRVEEL-ERKLAELRKMRKLELSGKGTPVKVVEKLTLE 531 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhcCCCcceehhhhhhHH
Confidence 3446677777777777777766666532 223445566666654311 112567777644
No 207
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=70.15 E-value=1.3e+02 Score=30.61 Aligned_cols=90 Identities=18% Similarity=0.278 Sum_probs=37.8
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchhhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 025912 88 HLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRV--RADIEKLCVIKQEMIKDLNEINGDLAKARDESKD 165 (246)
Q Consensus 88 ~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~--r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qq 165 (246)
.+...+..+....-.++-.+.++..++|.++. .+...+..+ -.++++|.....++..++..+..++..... +
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~el~---~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~---~ 450 (650)
T TIGR03185 377 QLEVLIQQVKRELQDAKSQLLKELRELEEELA---EVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLR---Q 450 (650)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 33334444433333445555555555555542 222222211 123444444444444444444444333322 2
Q ss_pred hHHHHHHHHHHHHHHHhh
Q 025912 166 MAAIKAEIETERQEIHKG 183 (246)
Q Consensus 166 ip~l~aEid~lrqElqr~ 183 (246)
+-.++.+|+.+..++.+.
T Consensus 451 ~~~~~~~i~~~~~~~~~~ 468 (650)
T TIGR03185 451 LETLKEAIEALRKTLDEK 468 (650)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334445555555555443
No 208
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=69.83 E-value=22 Score=26.30 Aligned_cols=25 Identities=20% Similarity=0.428 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 132 RADIEKLCVIKQEMIKDLNEINGDL 156 (246)
Q Consensus 132 r~e~q~L~a~RQELs~qvq~ltqeL 156 (246)
-.||+.|.+-=..|+..|..+..|+
T Consensus 9 s~dVq~L~~kvdqLs~dv~~lr~~v 33 (56)
T PF04728_consen 9 SSDVQTLNSKVDQLSSDVNALRADV 33 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 209
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=69.71 E-value=47 Score=33.71 Aligned_cols=18 Identities=33% Similarity=0.458 Sum_probs=9.8
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 025912 121 IESMHAELDRVRADIEKL 138 (246)
Q Consensus 121 ~e~lk~El~Q~r~e~q~L 138 (246)
++-+++||..+|...-.+
T Consensus 376 ieelrkelehlr~~kl~~ 393 (502)
T KOG0982|consen 376 IEELRKELEHLRRRKLVL 393 (502)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 355666666666544333
No 210
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=69.56 E-value=59 Score=26.39 Aligned_cols=25 Identities=28% Similarity=0.414 Sum_probs=12.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHh
Q 025912 199 EQREIMEKNIISVAQQIERLQAELA 223 (246)
Q Consensus 199 Eq~qaMEkNlisMarEvEKLRaEla 223 (246)
++.+.+++++.....+++++...+.
T Consensus 108 ~~~~~l~~~l~~~~~~~~~~~~~l~ 132 (140)
T PRK03947 108 KALEKLEEALQKLASRIAQLAQELQ 132 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555443
No 211
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=69.15 E-value=18 Score=32.79 Aligned_cols=58 Identities=24% Similarity=0.323 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhH
Q 025912 168 AIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANA 225 (246)
Q Consensus 168 ~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEkNlisMarEvEKLRaElana 225 (246)
.|.+++++++|-+-.++--||.+|.++-+--|---...+.+.+.-.+++-||.+|++.
T Consensus 85 eLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~ 142 (203)
T KOG3433|consen 85 ELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKI 142 (203)
T ss_pred HHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555556666666667888887776655544488888888888999999999875
No 212
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=68.29 E-value=83 Score=27.58 Aligned_cols=113 Identities=13% Similarity=0.220 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHH-----HHHHHHHHHhhhhHHhhhchhhHH-----HHHHHHHHHHHHHHHHHHHH
Q 025912 76 KQELSLAEQELRHLSSVAASVKAERD-----AEVRELYEKSLKLDAELRVIESMH-----AELDRVRADIEKLCVIKQEM 145 (246)
Q Consensus 76 rQeL~aaq~El~~l~~~i~~i~aE~e-----~qiReL~ek~~KmEAelRa~e~lk-----~El~Q~r~e~q~L~a~RQEL 145 (246)
|++|+.+-.|+-.--..++.+..... ..+-++.+++..+....-.-+.+. .|....=.=|+.+-..|..+
T Consensus 34 r~ela~~~~efa~~~~~L~~~E~~~~l~~~l~~~a~~~~~~~~~~~~~a~~e~~~l~~~L~ey~r~~~Svk~~~~~R~~~ 113 (216)
T cd07627 34 RKELASATEEFAETLEALSSLELSKSLSDLLAALAEVQKRIKESLERQALQDVLTLGVTLDEYIRSIGSVRAAFAQRQKL 113 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555554444443321111 234445555555554433322222 23333344456666677777
Q ss_pred HHHHHHHHHHHHHHhhh-----------hhhhHHHHHHHHHHHHHHHhhhhhhh
Q 025912 146 IKDLNEINGDLAKARDE-----------SKDMAAIKAEIETERQEIHKGRAAIE 188 (246)
Q Consensus 146 s~qvq~ltqeL~r~~~d-----------~qqip~l~aEid~lrqElqr~Raa~E 188 (246)
-..++.+.++|.+.++. ..+++.+..||+.+....+.++..||
T Consensus 114 ~~~~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a~~~~e 167 (216)
T cd07627 114 WQYWQSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASELKKEFE 167 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777632 35677888888888888888877554
No 213
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=67.96 E-value=1.3e+02 Score=29.80 Aligned_cols=95 Identities=20% Similarity=0.279 Sum_probs=47.7
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH----hhhhHHhhhchhhHHHHHHHHHH
Q 025912 58 IQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEK----SLKLDAELRVIESMHAELDRVRA 133 (246)
Q Consensus 58 iqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek----~~KmEAelRa~e~lk~El~Q~r~ 133 (246)
|++|...|..|--- +.-+.--|.|.+.|...-.++..+= .++|+++-| ..+||+=+ -.++.|-+++..
T Consensus 77 irk~~e~~eglr~i----~es~~e~q~e~~qL~~qnqkL~nqL-~~~~~vf~k~k~~~q~LE~li---~~~~EEn~~lql 148 (401)
T PF06785_consen 77 IRKITEKDEGLRKI----RESVEERQQESEQLQSQNQKLKNQL-FHVREVFMKTKGDIQHLEGLI---RHLREENQCLQL 148 (401)
T ss_pred HHHHHhccHHHHHH----HHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhcchHHHHHHHH---HHHHHHHHHHHH
Confidence 45555555444322 2233334555555544444444321 334443322 23444442 234566666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025912 134 DIEKLCVIKQEMIKDLNEINGDLAKAR 160 (246)
Q Consensus 134 e~q~L~a~RQELs~qvq~ltqeL~r~~ 160 (246)
-.+.+.-.+.|...+.|.|+.||+.+.
T Consensus 149 qL~~l~~e~~Ekeeesq~LnrELaE~l 175 (401)
T PF06785_consen 149 QLDALQQECGEKEEESQTLNRELAEAL 175 (401)
T ss_pred hHHHHHHHHhHhHHHHHHHHHHHHHHH
Confidence 666666666666666777766665543
No 214
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=67.73 E-value=26 Score=35.70 Aligned_cols=19 Identities=37% Similarity=0.529 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHhhHhhhH
Q 025912 210 SVAQQIERLQAELANAEKRA 229 (246)
Q Consensus 210 sMarEvEKLRaElanaEkRa 229 (246)
+| +|+|.||-+|-.|||+=
T Consensus 307 ~r-kelE~lR~~L~kAEkel 325 (575)
T KOG4403|consen 307 SR-KELEQLRVALEKAEKEL 325 (575)
T ss_pred HH-HHHHHHHHHHHHHHHHH
Confidence 44 69999999999999983
No 215
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=67.45 E-value=52 Score=29.70 Aligned_cols=65 Identities=25% Similarity=0.359 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 82 AEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDL 149 (246)
Q Consensus 82 aq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qv 149 (246)
|..-|..-+.-|..++.....++-.|==...|.|-. +.++...|.|-.-|++.|+.+|.||.++|
T Consensus 141 AeekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~---~~SLe~~LeQK~kEn~ELtkICDeLI~k~ 205 (207)
T PF05010_consen 141 AEEKLEKANEEIAQVRSKHQAELLALQASLKKEEMK---VQSLEESLEQKTKENEELTKICDELISKM 205 (207)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 216
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=67.01 E-value=57 Score=25.24 Aligned_cols=30 Identities=27% Similarity=0.453 Sum_probs=15.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 121 IESMHAELDRVRADIEKLCVIKQEMIKDLN 150 (246)
Q Consensus 121 ~e~lk~El~Q~r~e~q~L~a~RQELs~qvq 150 (246)
.+.+++|+..+..++..|.....++..+++
T Consensus 69 ~~~l~~e~~~lk~~i~~le~~~~~~e~~l~ 98 (108)
T PF02403_consen 69 AEELKAEVKELKEEIKELEEQLKELEEELN 98 (108)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555444444443
No 217
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=66.98 E-value=47 Score=32.43 Aligned_cols=35 Identities=11% Similarity=0.307 Sum_probs=22.1
Q ss_pred hhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 118 LRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEI 152 (246)
Q Consensus 118 lRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~l 152 (246)
+-.+-.+-.+..++..+++.|.+.|.+++.++..+
T Consensus 27 vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~ 61 (425)
T PRK05431 27 VDELLELDEERRELQTELEELQAERNALSKEIGQA 61 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455556666677777777777777777653
No 218
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=66.37 E-value=2.2e+02 Score=31.79 Aligned_cols=171 Identities=17% Similarity=0.241 Sum_probs=109.9
Q ss_pred HHHhhHHHHHHHHHhhHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhh---hhhhh-HHHHHHHHHHHhhhhHHhh
Q 025912 50 RIAIQHSDIQSLLQDNQRLAA-------THVALKQELSLAEQELRHLSSVAA---SVKAE-RDAEVRELYEKSLKLDAEL 118 (246)
Q Consensus 50 ~La~Q~~EiqrLl~dNqRLAa-------tHvaLrQeL~aaq~El~~l~~~i~---~i~aE-~e~qiReL~ek~~KmEAel 118 (246)
.|-.+|.|+..|-.|-+.|-. +-.-|+++......++.++..--. .|+.= .-...-+.-+.-.+..+..
T Consensus 175 ~ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k~~~v~y~~~~~ey~~~k 254 (1072)
T KOG0979|consen 175 ELLQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIELLEKKKKWVEYKKHDREYNAYK 254 (1072)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHhhhHHHHHHH
Confidence 355667777777777776653 455666666666666665532211 00000 0000111223445667888
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hhhhHHHHHHHHHHHHHHHhhhhhhhhhcccc
Q 025912 119 RVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE----SKDMAAIKAEIETERQEIHKGRAAIECEKKNR 194 (246)
Q Consensus 119 Ra~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d----~qqip~l~aEid~lrqElqr~Raa~EyEKK~~ 194 (246)
.+.+-+|.++.-+--+++.+...+.+|-.++..+..+....+.+ ...+-.+-..++.+.++++..-...|+=||.-
T Consensus 255 ~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~ 334 (1072)
T KOG0979|consen 255 QAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAA 334 (1072)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999988888888877777666666655543 34466677778888889888888887765532
Q ss_pred cchhHHHHHHHHhHHHHHHHHHHHHHHHhhHhh
Q 025912 195 ASNHEQREIMEKNIISVAQQIERLQAELANAEK 227 (246)
Q Consensus 195 ~e~~Eq~qaMEkNlisMarEvEKLRaElanaEk 227 (246)
++ -.+++..-...+..++++|.+++.
T Consensus 335 ----~~---rq~~i~~~~k~i~~~q~el~~~~~ 360 (1072)
T KOG0979|consen 335 ----EK---RQKRIEKAKKMILDAQAELQETED 360 (1072)
T ss_pred ----HH---HHHHHHHHHHHHHHHHhhhhhcCC
Confidence 22 235677777788888888877653
No 219
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=65.82 E-value=93 Score=27.26 Aligned_cols=49 Identities=20% Similarity=0.385 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHH-HHHHHHHHHHHHhhhhhhh
Q 025912 140 VIKQEMIKDLNEINGDLAKARDESKDMAAI-KAEIETERQEIHKGRAAIE 188 (246)
Q Consensus 140 a~RQELs~qvq~ltqeL~r~~~d~qqip~l-~aEid~lrqElqr~Raa~E 188 (246)
..|..+..+++.|.+++..++.+.++.-.. -..|+.+++++..++.+..
T Consensus 103 ~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~~~~an 152 (188)
T PF03962_consen 103 EEREELLEELEELKKELKELKKELEKYSENDPEKIEKLKEEIKIAKEAAN 152 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666666665532111 1346667777777776654
No 220
>PF08429 PLU-1: PLU-1-like protein; InterPro: IPR013637 This domain is found in the central region of lysine-specific demethylases, which are nuclear proteins that may have a role in DNA-binding and transcription, and are associated with malignant cancer phenotypes []. The domain is also found in various other Jumonji/ARID domain-containing proteins (see IPR013129 from INTERPRO, IPR001606 from INTERPRO). ; GO: 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process
Probab=65.80 E-value=1.1e+02 Score=28.05 Aligned_cols=142 Identities=17% Similarity=0.198 Sum_probs=71.0
Q ss_pred HHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 025912 102 AEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIH 181 (246)
Q Consensus 102 ~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElq 181 (246)
..+++|++.+.++-- -..+...++|...-...+.....=+++-..-.---.+|.-...+.+.+|.-..-++.|+..+.
T Consensus 183 ~~l~~Ll~~g~~l~~--~~~~~~~~~L~~~l~~~~~We~ka~~~L~~~~~~l~~Le~l~~~~~~ipv~~~~~~~L~~~l~ 260 (335)
T PF08429_consen 183 DELRELLDEGERLGI--PSDEKLMAELQELLKQGEEWEEKAKELLSRPRVSLEQLEALLEEAENIPVSLPSLDKLKDALQ 260 (335)
T ss_pred HHHHHHHHhhhcCCC--ccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 367888887777743 233444445544444444433333333221111123555566666777777777777888777
Q ss_pred hhhhh-------hh--hhcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhHhhh-HhHHHhhhhcCCCCCCCC
Q 025912 182 KGRAA-------IE--CEKKNRASNHEQREIMEKNIISVAQQIERLQAELANAEKR-ARAAAAAAAVNPSIYSLF 246 (246)
Q Consensus 182 r~Raa-------~E--yEKK~~~e~~Eq~qaMEkNlisMarEvEKLRaElanaEkR-a~a~~aaaa~np~~~~~~ 246 (246)
.+|.. ++ +.+..+.+.++..-.==++|-.---+...|...+.+++.= .++...|. ..++||+||
T Consensus 261 kak~w~~~i~~ll~~~~~~~p~~~el~~l~~~~~~L~~~~~~~~~Le~~~~~~~~W~~~~~k~F~-k~ns~~~ll 334 (335)
T PF08429_consen 261 KAKEWLRQIEELLEQNGSKRPTLDELEELVAESEELPVKLEELSDLEKQLKRAEDWMEKAKKLFL-KKNSPLHLL 334 (335)
T ss_pred HHHHHHHHHHHHhcccCCCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHhc-ccCchhhhh
Confidence 77753 22 1222222322222211112222223556666777666532 22222333 667999886
No 221
>PRK12704 phosphodiesterase; Provisional
Probab=65.61 E-value=1.6e+02 Score=29.83 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHHHHHhhHhhhHhHH
Q 025912 207 NIISVAQQIERLQAELANAEKRARAA 232 (246)
Q Consensus 207 NlisMarEvEKLRaElanaEkRa~a~ 232 (246)
-.-.|.+++|+-=. .+|+++|+-.
T Consensus 170 ~~~~~~~~~~~~~~--~~a~~~a~~i 193 (520)
T PRK12704 170 EAAVLIKEIEEEAK--EEADKKAKEI 193 (520)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 34455555554322 2566666644
No 222
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=65.56 E-value=57 Score=27.89 Aligned_cols=35 Identities=20% Similarity=0.430 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Q 025912 143 QEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEI 180 (246)
Q Consensus 143 QELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqEl 180 (246)
..+..+++.+.+||.+...| +-+|+...+++..|+
T Consensus 157 ~~~~~ei~~lk~el~~~~~~---~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEKE---IEALKKQSEGLQKEY 191 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhc
Confidence 34555566666666554433 335666666666554
No 223
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=65.15 E-value=81 Score=26.30 Aligned_cols=33 Identities=18% Similarity=0.385 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 025912 143 QEMIKDLNEINGDLAKARDESKDMAAIKAEIET 175 (246)
Q Consensus 143 QELs~qvq~ltqeL~r~~~d~qqip~l~aEid~ 175 (246)
.||..=++.+.+.|.-.++..+|+-.+..-|+.
T Consensus 122 ~el~~l~~ql~~hl~s~~~n~~~l~~~~~~ie~ 154 (160)
T PF13094_consen 122 EELLPLLKQLNKHLESMQNNLQQLKGLLEAIER 154 (160)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 355666666667777777777775555444443
No 224
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.00 E-value=1.7e+02 Score=30.03 Aligned_cols=69 Identities=14% Similarity=0.138 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhc-ccccchhHHHHHHHHhHHHHHHHHHHHHHH
Q 025912 150 NEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEK-KNRASNHEQREIMEKNIISVAQQIERLQAE 221 (246)
Q Consensus 150 q~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEK-K~~~e~~Eq~qaMEkNlisMarEvEKLRaE 221 (246)
...++=|++.++.--+|-.+..+-+++++|+--+-.-|+-|+ |.+-.++|+.+. ++-.+-+|.+.|-.+
T Consensus 448 R~aykllt~iH~nc~ei~E~i~~tg~~~revrdlE~qI~~E~~k~~l~slEkl~~---Dyqairqen~~L~~~ 517 (521)
T KOG1937|consen 448 RLAYKLLTRIHLNCMEILEMIRETGALKREVRDLESQIYVEEQKQYLKSLEKLHQ---DYQAIRQENDQLFSE 517 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHhHHHHHHHHhhHHHHHH---HHHHHHHHHHHHHHH
Confidence 356666777777778888888888888887765555555543 333344444433 444444444444443
No 225
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=64.84 E-value=1.1e+02 Score=27.86 Aligned_cols=19 Identities=16% Similarity=0.396 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHhhhhhhh
Q 025912 170 KAEIETERQEIHKGRAAIE 188 (246)
Q Consensus 170 ~aEid~lrqElqr~Raa~E 188 (246)
+.++|..+.++..+++.++
T Consensus 144 ~~~~~~~~~~~~~a~~~~~ 162 (331)
T PRK03598 144 ANDLENARSSRDQAQATLK 162 (331)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555444
No 226
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=64.43 E-value=69 Score=26.60 Aligned_cols=43 Identities=28% Similarity=0.351 Sum_probs=35.2
Q ss_pred hHhHHHHHHhhHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHH
Q 025912 44 LHHLEDRIAIQHSDIQSLLQD--NQRLAATHVALKQELSLAEQEL 86 (246)
Q Consensus 44 ~~~LEe~La~Q~~EiqrLl~d--NqRLAatHvaLrQeL~aaq~El 86 (246)
.=.|=|+|...+..|.++=.. |..++.++..|+.+|.+++.-+
T Consensus 69 vLALLDElE~~~~~i~~~~~~~e~~~~a~~~~~l~~~Le~ae~~~ 113 (139)
T PF13935_consen 69 VLALLDELERAQQRIAELEQECENEDIALDVQKLRVELEAAEKRI 113 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556777788888888744 9999999999999999998877
No 227
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=64.22 E-value=1.3e+02 Score=28.36 Aligned_cols=76 Identities=25% Similarity=0.382 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhh--hHHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 75 LKQELSLAEQELRHLSSVAASVKA--ERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEI 152 (246)
Q Consensus 75 LrQeL~aaq~El~~l~~~i~~i~a--E~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~l 152 (246)
|..++..++.|.......+..++. ..+..+..+-+...+++.| -+.+.+||..+..+-..|.....+|..+...+
T Consensus 14 l~~~~~~~~~E~~~Y~~fL~~l~~~~~~~~~~~~~~~el~~le~E---e~~l~~eL~~LE~e~~~l~~el~~le~e~~~l 90 (314)
T PF04111_consen 14 LDKQLEQAEKERDTYQEFLKKLEEESDSEEDIEELEEELEKLEQE---EEELLQELEELEKEREELDQELEELEEELEEL 90 (314)
T ss_dssp ----------------------------HH--HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444442 1223333334444444433 23333334444433333333333333333333
Q ss_pred H
Q 025912 153 N 153 (246)
Q Consensus 153 t 153 (246)
.
T Consensus 91 ~ 91 (314)
T PF04111_consen 91 D 91 (314)
T ss_dssp H
T ss_pred H
Confidence 3
No 228
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=64.15 E-value=49 Score=32.60 Aligned_cols=47 Identities=19% Similarity=0.203 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhhhcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhHh
Q 025912 166 MAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANAE 226 (246)
Q Consensus 166 ip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEkNlisMarEvEKLRaElanaE 226 (246)
+..+.+-++.+.+++..++ .+....+.-+-.+.+++++|+.+|....
T Consensus 126 ~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 126 LKEWFQAFDFNGSEIERLL--------------TEDREAERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4456666666666665555 3334445555557777788888776554
No 229
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=64.01 E-value=30 Score=24.14 Aligned_cols=36 Identities=17% Similarity=0.389 Sum_probs=26.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDL 156 (246)
Q Consensus 121 ~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL 156 (246)
-+.+|+.-..+.+|-..|....+.|.++|+.++.-|
T Consensus 7 y~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 7 YDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 466777777777777777777777777777776554
No 230
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=63.76 E-value=2.3e+02 Score=30.95 Aligned_cols=45 Identities=20% Similarity=0.268 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHh
Q 025912 138 LCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHK 182 (246)
Q Consensus 138 L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr 182 (246)
+....+++...+..+...|........++-.+..+++.++.++..
T Consensus 834 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 878 (1047)
T PRK10246 834 LAQQLRENTTRQGEIRQQLKQDADNRQQQQALMQQIAQATQQVED 878 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444444444444444444444444444333
No 231
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=63.39 E-value=1.2e+02 Score=27.62 Aligned_cols=72 Identities=21% Similarity=0.218 Sum_probs=37.8
Q ss_pred hHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhhhhhHHHHHHHHHHHhhhhHHh
Q 025912 46 HLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHL-SSVAASVKAERDAEVRELYEKSLKLDAE 117 (246)
Q Consensus 46 ~LEe~La~Q~~EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~l-~~~i~~i~aE~e~qiReL~ek~~KmEAe 117 (246)
+|++.|..-..++..+-..=-.+-+.+..|..++...+.....+ +.+...+.+-.|.=.|+++++...+|-.
T Consensus 28 ~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~ 100 (225)
T COG1842 28 MLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDL 100 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 45555554444444444444444555555555555555555555 3334444555555555555555555555
No 232
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=63.29 E-value=1.1e+02 Score=27.20 Aligned_cols=42 Identities=24% Similarity=0.309 Sum_probs=29.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 025912 62 LQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAE 103 (246)
Q Consensus 62 l~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~e~q 103 (246)
+.-|..|-+..-.|.++|...+++++.++..-..-+.+-...
T Consensus 135 ~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~ 176 (221)
T PF05700_consen 135 LIHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEE 176 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 446777778888888888888888888876555555444333
No 233
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=63.27 E-value=1.1e+02 Score=27.80 Aligned_cols=67 Identities=12% Similarity=0.235 Sum_probs=45.7
Q ss_pred HHHHhhhhHHhhhc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhhHHHHHHH
Q 025912 107 LYEKSLKLDAELRV-IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEI 173 (246)
Q Consensus 107 L~ek~~KmEAelRa-~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d-~qqip~l~aEi 173 (246)
+-.+..+++..... ...++....-+.++..++...=+.+++.|..++.++....+. .+..|.+...+
T Consensus 101 ~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~k~~~~l~~l~~~v~~l~~~~~~~~~~~~~~~~~flsq~ 169 (256)
T PF14932_consen 101 LSQELSELEGKEEEAQKKLKKAQKELSAECSKLNNELNQLLGEVSKLASELAHAHSGQQQNPPVFLSQM 169 (256)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCchhhhC
Confidence 33444555554322 234455555567788889999999999999999999997765 45667666554
No 234
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=62.70 E-value=86 Score=25.77 Aligned_cols=42 Identities=14% Similarity=0.180 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 025912 125 HAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDM 166 (246)
Q Consensus 125 k~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqi 166 (246)
..|+..+..+...|...-+.+...+.....|++|.+...+++
T Consensus 86 ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~ 127 (151)
T PF11559_consen 86 ERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQR 127 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444455555555555555555666665555553
No 235
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=62.45 E-value=62 Score=24.09 Aligned_cols=54 Identities=20% Similarity=0.324 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhhhHHHHHHHHHHHHHHHhhhh
Q 025912 131 VRADIEKLCVIKQEMIKDLNEINGDLAK-ARDESKDMAAIKAEIETERQEIHKGRA 185 (246)
Q Consensus 131 ~r~e~q~L~a~RQELs~qvq~ltqeL~r-~~~d~qqip~l~aEid~lrqElqr~Ra 185 (246)
+.+||+-=.+...||+ +|+.-+..+.+ ++.--++.-.|.+||+.|+.|+-..|+
T Consensus 6 L~~EirakQ~~~eEL~-kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 6 LEAEIRAKQAIQEELT-KVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3455555555555554 35555554443 444445677788888888887766664
No 236
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=62.43 E-value=2.5e+02 Score=31.04 Aligned_cols=71 Identities=21% Similarity=0.284 Sum_probs=38.6
Q ss_pred hhHHhhhchhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhh
Q 025912 113 KLDAELRVIESMHAELDRVRADIEKLCVI----KQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKG 183 (246)
Q Consensus 113 KmEAelRa~e~lk~El~Q~r~e~q~L~a~----RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~ 183 (246)
|.|......+.+|.|+.-+-.++++|... .|.=..+++.+...|..--...--+-.=..|++.+++|.++-
T Consensus 488 K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~~~~~~~~~e~~~~~~e~e~s 562 (980)
T KOG0980|consen 488 KTESQAKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLAAELVAREEEREALRLEAERS 562 (980)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56666777788888888888877777554 444444444444433322111111111123455566666665
No 237
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=62.41 E-value=63 Score=26.27 Aligned_cols=13 Identities=23% Similarity=0.626 Sum_probs=6.9
Q ss_pred HHHHHHhhhhHHh
Q 025912 105 RELYEKSLKLDAE 117 (246)
Q Consensus 105 ReL~ek~~KmEAe 117 (246)
++|+++...||..
T Consensus 4 ~~l~~~l~~le~~ 16 (107)
T PF06156_consen 4 KELFDRLDQLEQQ 16 (107)
T ss_pred HHHHHHHHHHHHH
Confidence 3455555555555
No 238
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=61.88 E-value=18 Score=26.52 Aligned_cols=43 Identities=16% Similarity=0.267 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhh
Q 025912 122 ESMHAELDRVRADIEKLC-VIKQEMIKDLNEINGDLAKARDESK 164 (246)
Q Consensus 122 e~lk~El~Q~r~e~q~L~-a~RQELs~qvq~ltqeL~r~~~d~q 164 (246)
+....-|.|.-.|++.+. +.|..+.++|.....||.+++.+.+
T Consensus 35 ~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 35 DEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333444555555555554 6778888888777777777766554
No 239
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=61.69 E-value=2.2e+02 Score=30.13 Aligned_cols=66 Identities=11% Similarity=0.200 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhhhhhhhhH---HHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 81 LAEQELRHLSSVAASVKAER---DAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGD 155 (246)
Q Consensus 81 aaq~El~~l~~~i~~i~aE~---e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqe 155 (246)
..++=++-|..++.-++.+- -..+|+-+++. +..++.+..|-..+++.|...++.|+.....|..-
T Consensus 533 ~~~E~l~lL~~a~~vlreeYi~~~~~ar~ei~~r---------v~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR 601 (717)
T PF10168_consen 533 SPQECLELLSQATKVLREEYIEKQDLAREEIQRR---------VKLLKQQKEQQLKELQELQEERKSLRESAEKLAER 601 (717)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666777766666331 11223333322 24455555555555555555555555544444443
No 240
>PRK01156 chromosome segregation protein; Provisional
Probab=61.64 E-value=2.1e+02 Score=29.95 Aligned_cols=31 Identities=26% Similarity=0.218 Sum_probs=11.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 122 ESMHAELDRVRADIEKLCVIKQEMIKDLNEI 152 (246)
Q Consensus 122 e~lk~El~Q~r~e~q~L~a~RQELs~qvq~l 152 (246)
+..+.++.....++.++.....++..++..+
T Consensus 632 e~~~~~l~~~~~~i~~~~~~i~~l~~~i~~l 662 (895)
T PRK01156 632 NNKYNEIQENKILIEKLRGKIDNYKKQIAEI 662 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 241
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=60.85 E-value=1.7e+02 Score=31.07 Aligned_cols=16 Identities=31% Similarity=0.534 Sum_probs=7.8
Q ss_pred hHHHHHHHHHHHHHHH
Q 025912 166 MAAIKAEIETERQEIH 181 (246)
Q Consensus 166 ip~l~aEid~lrqElq 181 (246)
+-..+.|++.+-.++.
T Consensus 574 ~~~a~~~~~~~i~~lk 589 (771)
T TIGR01069 574 LKALKKEVESIIRELK 589 (771)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444455555555554
No 242
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=60.21 E-value=2.9e+02 Score=31.10 Aligned_cols=134 Identities=18% Similarity=0.221 Sum_probs=68.2
Q ss_pred hHhHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH---HHHHHHHHHHhhhhHH----
Q 025912 44 LHHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAER---DAEVRELYEKSLKLDA---- 116 (246)
Q Consensus 44 ~~~LEe~La~Q~~EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~---e~qiReL~ek~~KmEA---- 116 (246)
.+.+|.+|..-.+|+..=..-|++|- +||..-+-|+..+++-+.+...|. +++.-++-.=.-++|+
T Consensus 179 lAdle~kir~LrqElEEK~enll~lr-------~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d~~ 251 (1195)
T KOG4643|consen 179 LADLEKKIRTLRQELEEKFENLLRLR-------NELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPDTT 251 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCCCc
Confidence 34566666666666666555555544 333333333333333333333222 1111111111112221
Q ss_pred ---hhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhh
Q 025912 117 ---ELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRA 185 (246)
Q Consensus 117 ---elRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Ra 185 (246)
-+--.+-+|+=+.-++-|-+.|....+.|-.|+|.+..-=.. .+=-.+|--+++.++.|+-|..-.|.
T Consensus 252 ykerlmDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~-~tleseiiqlkqkl~dm~~erdtdr~ 322 (1195)
T KOG4643|consen 252 YKERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEG-ATLESEIIQLKQKLDDMRSERDTDRH 322 (1195)
T ss_pred cchhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcccc-CChHHHHHHHHHHHHHHHHhhhhHHH
Confidence 122234488888889999999999999999999887543222 11123344455555555544444333
No 243
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=60.13 E-value=44 Score=23.37 Aligned_cols=10 Identities=50% Similarity=0.727 Sum_probs=5.6
Q ss_pred HHHHHHHHHh
Q 025912 173 IETERQEIHK 182 (246)
Q Consensus 173 id~lrqElqr 182 (246)
||.+++||.+
T Consensus 28 IeA~~~eL~r 37 (40)
T PF08776_consen 28 IEAIRQELSR 37 (40)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 4556666554
No 244
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=60.07 E-value=1.4e+02 Score=27.44 Aligned_cols=6 Identities=33% Similarity=0.274 Sum_probs=2.2
Q ss_pred HHHHHH
Q 025912 47 LEDRIA 52 (246)
Q Consensus 47 LEe~La 52 (246)
++..+.
T Consensus 84 ~~~~l~ 89 (346)
T PRK10476 84 YELTVA 89 (346)
T ss_pred HHHHHH
Confidence 333333
No 245
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=60.06 E-value=1.2e+02 Score=26.76 Aligned_cols=97 Identities=22% Similarity=0.392 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccchhHHHHH
Q 025912 127 ELDRVRADIEKLCVIKQ---EMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREI 203 (246)
Q Consensus 127 El~Q~r~e~q~L~a~RQ---ELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qa 203 (246)
+|.-+++-+.+|...+. .+......+.+.+.....+.+++-.-.++++.-=-|+++....+. +..++
T Consensus 87 nV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~----------~~ke~ 156 (190)
T PF05266_consen 87 NVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLK----------EKKEA 156 (190)
T ss_pred ccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH----------HHHHH
Confidence 44556666666666666 344444555556555555566665555666555555655554443 34556
Q ss_pred HHHhHHHHHHHHHHHHHHHhhHhhhHhHHH
Q 025912 204 MEKNIISVAQQIERLQAELANAEKRARAAA 233 (246)
Q Consensus 204 MEkNlisMarEvEKLRaElanaEkRa~a~~ 233 (246)
+.+.+..|-.+++++-.++.|++-+=..++
T Consensus 157 ~~~ei~~lks~~~~l~~~~~~~e~~F~~~~ 186 (190)
T PF05266_consen 157 KDKEISRLKSEAEALKEEIENAELEFQSVA 186 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 668888888899999999999988765554
No 246
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=59.77 E-value=2e+02 Score=29.21 Aligned_cols=49 Identities=12% Similarity=0.108 Sum_probs=30.4
Q ss_pred HHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 104 VRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGD 155 (246)
Q Consensus 104 iReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqe 155 (246)
.+.+.-|..+.|.+|+ -|+.|..|++.|.=...+...-|+.+++.+..+
T Consensus 43 ~~ai~a~~~~~E~~l~---~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~~en~ 91 (459)
T KOG0288|consen 43 SRAIKAKLQEKELELN---RLQEENTQLNEERVREEATEKTLTVDVLIAENL 91 (459)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446666667777754 467777777777666666666666655544433
No 247
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=59.24 E-value=1.3e+02 Score=26.67 Aligned_cols=43 Identities=19% Similarity=0.325 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHh
Q 025912 137 KLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHK 182 (246)
Q Consensus 137 ~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr 182 (246)
+|....+-+..+.+....|+.+.+++.. .+..++++++.+.+.
T Consensus 142 el~~~~~~~~~~ke~~~~ei~~lks~~~---~l~~~~~~~e~~F~~ 184 (190)
T PF05266_consen 142 ELQRQAAKLKEKKEAKDKEISRLKSEAE---ALKEEIENAELEFQS 184 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 3333334444455555555555555433 344555555555443
No 248
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=58.98 E-value=69 Score=27.73 Aligned_cols=69 Identities=20% Similarity=0.362 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 025912 104 VRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIH 181 (246)
Q Consensus 104 iReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElq 181 (246)
+..|.+.+.+...+ ++.+-.||.+.+. +|..--+.|...+..++.= +.++...||.|+.+|+.++.+++
T Consensus 112 i~~L~~~i~~~q~~---~~~~i~~L~~f~~---~l~~D~~~l~~~~~~l~~~---l~~~~g~I~~L~~~I~~~~~~I~ 180 (184)
T PF05791_consen 112 IEDLQDQIQKNQDK---VQALINELNDFKD---KLQKDSRNLKTDVDELQSI---LAGENGDIPQLQKQIENLNEEIK 180 (184)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH---HHHTT--HHHHHHHHHHHTGGG-
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHH---HHHHHHHHHHHhHHHHHHH---HhcccCCHHHHHHHHHHHHHHHH
No 249
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=58.43 E-value=11 Score=33.12 Aligned_cols=44 Identities=23% Similarity=0.475 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHH
Q 025912 99 ERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEM 145 (246)
Q Consensus 99 E~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQEL 145 (246)
|=|..+-.-|||.+-||.||..-|.|+-++|.++-|+. -.||||
T Consensus 4 D~EsklN~AIERnalLE~ELdEKE~L~~~~QRLkDE~R---DLKqEl 47 (166)
T PF04880_consen 4 DFESKLNQAIERNALLESELDEKENLREEVQRLKDELR---DLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCH-----------------
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 44667778899999999999888888888888877554 446777
No 250
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=57.64 E-value=3.2e+02 Score=30.78 Aligned_cols=153 Identities=24% Similarity=0.256 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH--HH-------HHHHHHHH------------hhhhHHhhhchhhH
Q 025912 66 QRLAATHVALKQELSLAEQELRHLSSVAASVKAER--DA-------EVRELYEK------------SLKLDAELRVIESM 124 (246)
Q Consensus 66 qRLAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~--e~-------qiReL~ek------------~~KmEAelRa~e~l 124 (246)
--|....--|+.++..|..+.++.-.-...|.+|+ .. ..+-+.++ .-+.|++ .+.+
T Consensus 156 iElK~EYeelK~E~~kAE~~t~~~~~kkk~I~aEkk~aK~~k~eaeky~~lkde~~~~q~e~~L~qLfhvE~~---i~k~ 232 (1141)
T KOG0018|consen 156 IELKPEYEELKYEMAKAEETTTGNYKKKKSIAAEKKEAKEGKEEAEKYQRLKDEKGKAQKEQFLWELFHVEAC---IEKA 232 (1141)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---Hhhh
Confidence 34566777778888888877777766666666665 11 11222222 2233444 4455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH-----------------HHHHHHhhhhhh
Q 025912 125 HAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIET-----------------ERQEIHKGRAAI 187 (246)
Q Consensus 125 k~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~-----------------lrqElqr~Raa~ 187 (246)
..||....+++.++...+..-...+....++..+..-+.+++.....+.+. ++..+......+
T Consensus 233 ~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~erp~li~~ke~~~~~k~rl~~~~k~i 312 (1141)
T KOG0018|consen 233 NDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAERPELIKVKENASHLKKRLEEIEKDI 312 (1141)
T ss_pred hHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhcchhhccchhHHHHhhhhH
Confidence 666666666666666555555555555554544444444444333333322 222233333333
Q ss_pred hhhcccccchhHHHHHHHHhHHHHHHHHHHHHHH
Q 025912 188 ECEKKNRASNHEQREIMEKNIISVAQQIERLQAE 221 (246)
Q Consensus 188 EyEKK~~~e~~Eq~qaMEkNlisMarEvEKLRaE 221 (246)
+-=+|.+-.+-+..+.++|-++++..=-+-+-.|
T Consensus 313 ~~~kk~~~~~~~~ie~~ek~l~av~~~~~~feke 346 (1141)
T KOG0018|consen 313 ETAKKDYRALKETIERLEKELKAVEGAKEEFEKE 346 (1141)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444556666677777777776654433333333
No 251
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=57.63 E-value=59 Score=33.00 Aligned_cols=94 Identities=20% Similarity=0.309 Sum_probs=47.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHH
Q 025912 57 DIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIE 136 (246)
Q Consensus 57 EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q 136 (246)
|++.|=.|=---.+|--.|-=.+...+.+++.+...=.++++|.+. |-.+-..++-.+ ..+|..+-.++..+.+
T Consensus 46 e~kalGiegDTP~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~----L~~r~~~id~~i--~~av~~~~~~~~~~~~ 119 (472)
T TIGR03752 46 ELKALGIEGDTPADTLRTLVAEVKELRKRLAKLISENEALKAENER----LQKREQSIDQQI--QQAVQSETQELTKEIE 119 (472)
T ss_pred hhHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhhHHHHH--HHHHHhhhHHHHHHHH
Confidence 3344433333344454455555555555555555555556666651 222222222222 2344444445555666
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 025912 137 KLCVIKQEMIKDLNEINGDL 156 (246)
Q Consensus 137 ~L~a~RQELs~qvq~ltqeL 156 (246)
.|...+|.|.++++.|+..|
T Consensus 120 ql~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 120 QLKSERQQLQGLIDQLQRRL 139 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777666655
No 252
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=57.61 E-value=3.4e+02 Score=31.00 Aligned_cols=57 Identities=11% Similarity=0.229 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhhhhcccccchhHHHHHHHHhHHHHHHHHHHHHHH
Q 025912 165 DMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAE 221 (246)
Q Consensus 165 qip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEkNlisMarEvEKLRaE 221 (246)
++..++.-|+.+...+...++.+.-=|+--.+.---....+||+-.+-.|..-|+-.
T Consensus 522 ~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~ 578 (1293)
T KOG0996|consen 522 KVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQ 578 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 344444444444444444444443322222222222344455555555555533333
No 253
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=57.17 E-value=1.4e+02 Score=26.59 Aligned_cols=43 Identities=19% Similarity=0.325 Sum_probs=33.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhhh
Q 025912 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAK-ARDES 163 (246)
Q Consensus 121 ~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r-~~~d~ 163 (246)
++..+.++..+..++..+...+++|..-+..+-.+|.. ...|.
T Consensus 79 v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~~d~ 122 (251)
T PF11932_consen 79 VASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFVELDL 122 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45677777888888888888888888888888888876 33344
No 254
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=57.00 E-value=1.5e+02 Score=26.89 Aligned_cols=36 Identities=8% Similarity=-0.069 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhhhhhhhhhcccccchhHHHHHHHH
Q 025912 171 AEIETERQEIHKGRAAIECEKKNRASNHEQREIMEK 206 (246)
Q Consensus 171 aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEk 206 (246)
.+++.+....+...+..+...+++...++...+|..
T Consensus 218 ~~~~~l~~~~~~~~a~~~~~~~~~~G~l~R~~Al~~ 253 (301)
T PF14362_consen 218 ARKARLDEARQAKVAEFQAIISANDGFLARLEALWE 253 (301)
T ss_pred HHHHHHHHHHHHHHHHHhHhhccCCCHHHHHHHHHH
Confidence 777777777777777777777888899999888754
No 255
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=56.97 E-value=3.5 Score=41.54 Aligned_cols=28 Identities=18% Similarity=0.434 Sum_probs=0.0
Q ss_pred hhhhhhhHHHHHHHHHHHhhhhHHhhhc
Q 025912 93 AASVKAERDAEVRELYEKSLKLDAELRV 120 (246)
Q Consensus 93 i~~i~aE~e~qiReL~ek~~KmEAelRa 120 (246)
+...+-|||.|||++++|.+-+|.|||.
T Consensus 424 Lr~QQ~eKd~qmksII~RL~~vEeELrr 451 (495)
T PF12004_consen 424 LRRQQEEKDSQMKSIISRLMAVEEELRR 451 (495)
T ss_dssp ----------------------------
T ss_pred HHHHhhhhHHHHHHHHhhhhhhhhhhhh
Confidence 4567889999999999999999999775
No 256
>smart00338 BRLZ basic region leucin zipper.
Probab=56.86 E-value=70 Score=22.86 Aligned_cols=39 Identities=21% Similarity=0.431 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025912 122 ESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKAR 160 (246)
Q Consensus 122 e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~ 160 (246)
+-=+..+..+..+++.|...-.+|..+|..|..++..+.
T Consensus 22 ~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk 60 (65)
T smart00338 22 ERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLK 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555555666666666666665555555555443
No 257
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=56.61 E-value=3.4e+02 Score=30.65 Aligned_cols=141 Identities=18% Similarity=0.248 Sum_probs=78.2
Q ss_pred CCCCccccccccCCCCCCCCCCC--C-----------------CCCchHhHHHHHHhhHHHHHHHHHhhHH-------HH
Q 025912 16 SQFTMSGRRVLREPPLSTRALPP--Q-----------------HSPSLHHLEDRIAIQHSDIQSLLQDNQR-------LA 69 (246)
Q Consensus 16 ~~~~~~~r~~~~~~~~~~~~~p~--p-----------------~~p~~~~LEe~La~Q~~EiqrLl~dNqR-------LA 69 (246)
--.|.+|=++-..|++..|--.- + -.-+.+-++..|..+..+|..|.++=|+ +-
T Consensus 640 n~ITl~GDqvskkG~lTgGy~D~krsrLe~~k~~~~~~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~ 719 (1200)
T KOG0964|consen 640 NCITLSGDQVSKKGVLTGGYEDQKRSRLELLKNVNESRSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFK 719 (1200)
T ss_pred CeEEeccceecccCCccccchhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34567777777777776442100 0 0011223344555555566666655444 44
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhh---hHHHHHHHHHHHhhhhHHhhhc-------------hhhHHHHHHHHHH
Q 025912 70 ATHVALKQELSLAEQELRHLSSVAASVKA---ERDAEVRELYEKSLKLDAELRV-------------IESMHAELDRVRA 133 (246)
Q Consensus 70 atHvaLrQeL~aaq~El~~l~~~i~~i~a---E~e~qiReL~ek~~KmEAelRa-------------~e~lk~El~Q~r~ 133 (246)
..|-.|++|+...+.|..++...+....- +=....+.+-++..-+|+||-+ ++.+..|+.+++-
T Consensus 720 ~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~~l~~~~~~~~~~e~el~sel~sqLt~ee~e~l~kLn~eI~~l~~ 799 (1200)
T KOG0964|consen 720 REHEKLKRELNTIKGEKSRVQESLEPKGKELEEIKTSLHKLESQSNYFESELGSELFSQLTPEELERLSKLNKEINKLSV 799 (1200)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhcCHHHHHHHHHhhHHHHHHHH
Confidence 67888888888888888877554433221 2223444555555566665533 3455666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025912 134 DIEKLCVIKQEMIKDLNEINGDL 156 (246)
Q Consensus 134 e~q~L~a~RQELs~qvq~ltqeL 156 (246)
+...+...|-++.+..-.++-+|
T Consensus 800 kl~~~~~er~~~~~rk~~le~~l 822 (1200)
T KOG0964|consen 800 KLRALREERIDIETRKTALEANL 822 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66566666666555554444443
No 258
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=56.47 E-value=1.6e+02 Score=27.34 Aligned_cols=60 Identities=17% Similarity=0.232 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhh
Q 025912 124 MHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKG 183 (246)
Q Consensus 124 lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~ 183 (246)
+++++.++.++...+.+..+....+++....++.|.+.=.++--..+.|+|..+.++.-.
T Consensus 97 ~~~~~~~~~a~l~~~~~~l~~a~~~l~~a~~~~~r~~~L~~~g~is~~~~~~~~~~~~~~ 156 (370)
T PRK11578 97 AENQIKEVEATLMELRAQRQQAEAELKLARVTLSRQQRLAKTQAVSQQDLDTAATELAVK 156 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 344444444444444444445555555555555555443333333345555554444333
No 259
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=56.32 E-value=2.2e+02 Score=28.39 Aligned_cols=125 Identities=16% Similarity=0.235 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhh-HHhhhchh--hHHHHHH-HHHHHHHHHHHHHHHHHHHH-
Q 025912 75 LKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKL-DAELRVIE--SMHAELD-RVRADIEKLCVIKQEMIKDL- 149 (246)
Q Consensus 75 LrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~Km-EAelRa~e--~lk~El~-Q~r~e~q~L~a~RQELs~qv- 149 (246)
+.--+..+..++..|..-+..++++.+..+...+++..+= -.+++.-. .++..+. +-..-..++...+.+|....
T Consensus 249 ~~~~i~~a~~~i~~L~~~l~~l~~~~~~~l~~~L~~q~~e~~~~~~~~~~~~le~~~~~~~~~~~~e~~~~~~~l~~~~~ 328 (582)
T PF09731_consen 249 LNSLIAHAKERIDALQKELAELKEEEEEELERALEEQREELLSKLREELEQELEEKRAELEEELREEFEREREELEEKYE 328 (582)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555677788888888888888887776666555544321 11111110 1111110 11111122333333333332
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH-----HhhhhhhhhhcccccchhHHH
Q 025912 150 NEINGDLAKARDESKDMAAIKAEIETERQEI-----HKGRAAIECEKKNRASNHEQR 201 (246)
Q Consensus 150 q~ltqeL~r~~~d~qqip~l~aEid~lrqEl-----qr~Raa~EyEKK~~~e~~Eq~ 201 (246)
+.|.++|.+......+ .|+.++.....|+ +.....++-|+.++...++.+
T Consensus 329 ~~L~~eL~~~~~~~~~--~l~~~l~~~~~e~~~~~~~~i~~~v~~Er~~~~~~l~~~ 383 (582)
T PF09731_consen 329 EELRQELKRQEEAHEE--HLKNELREQAIELQREFEKEIKEKVEQERNGRLAKLAEL 383 (582)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2344455444433322 3455555555555 335788888988887776654
No 260
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=55.98 E-value=94 Score=30.94 Aligned_cols=119 Identities=16% Similarity=0.244 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHH-----hh-hchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 76 KQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDA-----EL-RVIESMHAELDRVRADIEKLCVIKQEMIKDL 149 (246)
Q Consensus 76 rQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEA-----el-Ra~e~lk~El~Q~r~e~q~L~a~RQELs~qv 149 (246)
..|+...+.||..|.+.-.+.+.+--.-|-.+.+|+.++=. .- -+.--|-..-..+..+.+.|..-=-+|-.-|
T Consensus 150 ~~Ev~~LRreLavLRQl~~~~~~~~~~~i~~i~~ki~~~k~~s~~~~~~~~R~~~~~~k~~L~~~sd~Ll~kVdDLQD~V 229 (424)
T PF03915_consen 150 LKEVQSLRRELAVLRQLYSEFQSEVKESISSIREKIKKVKSASTNASGDSNRAYMESGKKKLSEESDRLLTKVDDLQDLV 229 (424)
T ss_dssp --------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666666666666666666666655332 10 0011222333344555566666666666666
Q ss_pred HHHHHHHHH--HhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccc
Q 025912 150 NEINGDLAK--ARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNR 194 (246)
Q Consensus 150 q~ltqeL~r--~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~ 194 (246)
..|.+|+.. .+...+|+-.+..+|+.+..++...-..|.-||-.-
T Consensus 230 E~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~W 276 (424)
T PF03915_consen 230 EDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIW 276 (424)
T ss_dssp HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH
Confidence 667777653 556677888888888888888888888887777443
No 261
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=55.94 E-value=86 Score=25.03 Aligned_cols=51 Identities=12% Similarity=0.195 Sum_probs=37.1
Q ss_pred HHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 107 LYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAK 158 (246)
Q Consensus 107 L~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r 158 (246)
.-.|..++|.+++.. |=+.|+..++.++-++...-+.|.+++++++.-+..
T Consensus 47 ~~~Rl~~lE~~l~~L-Pt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~l 97 (106)
T PF10805_consen 47 HDRRLQALETKLEHL-PTRDDVHDLQLELAELRGELKELSARLQGVSHQLDL 97 (106)
T ss_pred HHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 456677788885543 337888888888888888888888888888765544
No 262
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=55.63 E-value=90 Score=23.75 Aligned_cols=42 Identities=26% Similarity=0.309 Sum_probs=21.9
Q ss_pred HhHHHHHHhhH-------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 025912 45 HHLEDRIAIQH-------SDIQSLLQDNQRLAATHVALKQELSLAEQEL 86 (246)
Q Consensus 45 ~~LEe~La~Q~-------~EiqrLl~dNqRLAatHvaLrQeL~aaq~El 86 (246)
+-||.|+..-- .||..|-..|..|...+..|+++....++|-
T Consensus 7 ~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~ 55 (72)
T PF06005_consen 7 EQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQER 55 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 45666655544 4455555555555555555555555555443
No 263
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=55.57 E-value=2.5e+02 Score=28.78 Aligned_cols=40 Identities=18% Similarity=0.220 Sum_probs=27.0
Q ss_pred HHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 109 EKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKD 148 (246)
Q Consensus 109 ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~q 148 (246)
+|.+..=+=+++.|+-+.-|.|-.-|-|.|.+.-|||.+.
T Consensus 439 QKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELnnR 478 (593)
T KOG4807|consen 439 QKCLENAHLAQALEAERQALRQCQRENQELNAHNQELNNR 478 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhH
Confidence 4444444455666777777777777888888888877763
No 264
>PF15463 ECM11: Extracellular mutant protein 11
Probab=55.55 E-value=80 Score=26.24 Aligned_cols=49 Identities=10% Similarity=0.207 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhhhHHHHHHHHHHHHH
Q 025912 131 VRADIEKLCVIKQEMIKDLNEINGDLAK-ARDESKDMAAIKAEIETERQE 179 (246)
Q Consensus 131 ~r~e~q~L~a~RQELs~qvq~ltqeL~r-~~~d~qqip~l~aEid~lrqE 179 (246)
-..=+++|...|+++.-.++.++.++++ +.+-..+.-.|...++.|++.
T Consensus 85 f~~l~~kl~~~R~~~r~~~~~fe~eI~~R~eav~~~~~~l~~kL~~mk~~ 134 (139)
T PF15463_consen 85 FSELMQKLKEARRKLRKKFAVFEDEINRRAEAVRAQGEQLDRKLEKMKEG 134 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444789999999999999999999986 444455566677777777654
No 265
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=55.43 E-value=1.9e+02 Score=27.50 Aligned_cols=28 Identities=14% Similarity=0.133 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 64 DNQRLAATHVALKQELSLAEQELRHLSS 91 (246)
Q Consensus 64 dNqRLAatHvaLrQeL~aaq~El~~l~~ 91 (246)
||..+-+....++..+.+++..+.++.+
T Consensus 90 ~~~~~~~~~~~~~~~l~~~~~q~~~l~~ 117 (421)
T TIGR03794 90 FQPELRERLQESYQKLTQLQEQLEEVRN 117 (421)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555555555544
No 266
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=55.10 E-value=75 Score=22.68 Aligned_cols=38 Identities=13% Similarity=0.346 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025912 124 MHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARD 161 (246)
Q Consensus 124 lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~ 161 (246)
=+..+.++...+..|......|..++..|.+++..+..
T Consensus 24 Kk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 24 KKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444455555445555444444444444433
No 267
>PRK07248 hypothetical protein; Provisional
Probab=54.93 E-value=91 Score=23.60 Aligned_cols=35 Identities=11% Similarity=0.311 Sum_probs=30.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGD 155 (246)
Q Consensus 121 ~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqe 155 (246)
.+.+|.++.++-.++-+|.+.|-.++.+|..+.++
T Consensus 3 L~~lR~~ID~iD~~i~~Ll~~R~~l~~~I~~~K~~ 37 (87)
T PRK07248 3 LEEIRQEIDQIDDQLVALLEKRMALVEQVVAYKKA 37 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999998766655
No 268
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=54.88 E-value=1.4e+02 Score=25.91 Aligned_cols=91 Identities=18% Similarity=0.187 Sum_probs=48.1
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHH
Q 025912 58 IQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEK 137 (246)
Q Consensus 58 iqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~ 137 (246)
+++.--.+++|=+.-.+++++|..+..++-.-.....- ....++..-+++..| +.++.|+..+ +...
T Consensus 10 ~~rr~R~~~rL~~~L~~~r~al~~~~a~~~~~~a~v~~----~~~~l~~~~~ri~~m---~~gg~~f~i~------~~~~ 76 (158)
T PF09486_consen 10 IQRRRRRERRLRARLAAQRRALAAAEAELAEQQAEVEA----ARQRLRAHDARIDAM---MTGGAPFSID------EYLA 76 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhHHHHHHHH---HcCCCCccHH------HHHH
Confidence 34445556677777777777777776666554433331 223334444444444 4456666533 2333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 025912 138 LCVIKQEMIKDLNEINGDLAKARD 161 (246)
Q Consensus 138 L~a~RQELs~qvq~ltqeL~r~~~ 161 (246)
+...|-.|..+++.+.++++.++.
T Consensus 77 ~~~~r~~l~~~~~~~e~~~a~l~~ 100 (158)
T PF09486_consen 77 LRRYRDVLEERVRAAEAELAALRQ 100 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555443
No 269
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=54.85 E-value=2.1e+02 Score=27.69 Aligned_cols=65 Identities=14% Similarity=0.250 Sum_probs=37.8
Q ss_pred HHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Q 025912 107 LYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIE 174 (246)
Q Consensus 107 L~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid 174 (246)
.+.||..||.. +|-||+|-+|=.--+..|.++-|-=-.+|..-..+..-++-++|.+-..-..++
T Consensus 16 aLqKIqelE~Q---ldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~le 80 (307)
T PF10481_consen 16 ALQKIQELEQQ---LDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLE 80 (307)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHH
Confidence 46777778877 577777777777766677666555444444444444444444444443333333
No 270
>PF10243 MIP-T3: Microtubule-binding protein MIP-T3; InterPro: IPR018799 This entry represents a protein which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), and is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved []. ; PDB: 2EQO_A.
Probab=54.56 E-value=4.1 Score=40.52 Aligned_cols=129 Identities=21% Similarity=0.285 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 69 AATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKD 148 (246)
Q Consensus 69 AatHvaLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~q 148 (246)
...|.+|-|.+-.++.|+--..........+..+ -+.=+..+....|+.+||.-||.|+..=.=|-
T Consensus 390 ~~~~G~Lv~~iletkk~~e~~~~~~~~~~~~~~~------------~~~~~~~~~~~~ei~~lr~~iQ~l~~s~~PLg-- 455 (539)
T PF10243_consen 390 EEEHGGLVQKILETKKELEKSANSEEKEEKEQSL------------AASKKERESVEKEIEKLRESIQTLCRSANPLG-- 455 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred chhcCHHHHHHHHHHHHHhhcccccccccccccc------------hhhhccchhHHHHHHHHHHHHHHHHHhcchHH--
Confidence 4578888888888888887654433321111111 22333456667777777777777665433332
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHh-------hhhhhhhhcccccchh----HHHHHHHHhHHHHHHHHHH
Q 025912 149 LNEINGDLAKARDESKDMAAIKAEIETERQEIHK-------GRAAIECEKKNRASNH----EQREIMEKNIISVAQQIER 217 (246)
Q Consensus 149 vq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr-------~Raa~EyEKK~~~e~~----Eq~qaMEkNlisMarEvEK 217 (246)
+-|.-+..+||.|++||+. .-.++.-|++...+-+ .|+..+|.++.-+-..|-.
T Consensus 456 ---------------k~~d~iqEDid~M~~El~~W~~e~~~~~~~l~~e~~~t~~~~~pl~~~L~ele~~I~~~~~~i~~ 520 (539)
T PF10243_consen 456 ---------------KLMDYIQEDIDSMQKELEMWRSEYRQHAEALQEEQSITDEALEPLKAQLAELEQQIKDQQDKICA 520 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334444455555555554 4455555665554433 4555566666555555555
Q ss_pred HHHHHhhHh
Q 025912 218 LQAELANAE 226 (246)
Q Consensus 218 LRaElanaE 226 (246)
+||-|.+-|
T Consensus 521 ~ka~Il~Ne 529 (539)
T PF10243_consen 521 VKANILKNE 529 (539)
T ss_dssp ---------
T ss_pred HHHHHHhhH
Confidence 555554443
No 271
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=54.53 E-value=4.1 Score=43.10 Aligned_cols=107 Identities=21% Similarity=0.340 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccchhHHH
Q 025912 122 ESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQR 201 (246)
Q Consensus 122 e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~ 201 (246)
+.|..+|..=+-.-..+...++.|-+++..|..-|..+. +.-....-.|..++..+.-+...+|-.....-+..++.
T Consensus 528 ~~le~~LE~E~k~r~~~~r~kkKLE~~l~eLe~~ld~~n---~~~~e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~ 604 (859)
T PF01576_consen 528 ESLEAELEEERKERAEALREKKKLESDLNELEIQLDHAN---RANEEAQKQLKKLQAQLKDLQRELEEAQRAREELREQL 604 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---HhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 444444433333333455556666666666654433322 22223344455566666666677777778888899999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhhHhhhHhH
Q 025912 202 EIMEKNIISVAQQIERLQAELANAEKRARA 231 (246)
Q Consensus 202 qaMEkNlisMarEvEKLRaElanaEkRa~a 231 (246)
..+|+.+-.|..|++-++..+..+++--+.
T Consensus 605 ~~~e~r~~~l~~elee~~~~~~~a~r~rk~ 634 (859)
T PF01576_consen 605 AVSERRLRALQAELEELREALEQAERARKQ 634 (859)
T ss_dssp ------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888765443
No 272
>PF14966 DNA_repr_REX1B: DNA repair REX1-B
Probab=53.95 E-value=70 Score=25.45 Aligned_cols=57 Identities=21% Similarity=0.269 Sum_probs=47.5
Q ss_pred hhhhhHHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 95 SVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEI 152 (246)
Q Consensus 95 ~i~aE~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~l 152 (246)
.+-.+=...+.++...+..+|+.|+. +.-+.++...=.++|.....|=+||+++|-+
T Consensus 40 ~~~~~iT~~f~~~S~ei~~ie~~L~~-~~~~~~la~~i~~lQ~~Ek~KL~lT~~lQ~l 96 (97)
T PF14966_consen 40 QLCHEITQEFSAISKEILAIEAELRD-EHERPDLAELIRELQEQEKEKLELTAKLQVL 96 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-ccCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33445566788888999999999986 6777888888889999999999999999865
No 273
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=53.33 E-value=2.2e+02 Score=27.49 Aligned_cols=99 Identities=21% Similarity=0.364 Sum_probs=63.8
Q ss_pred HHHHHHHhhHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHH
Q 025912 57 DIQSLLQDNQR----LAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVR 132 (246)
Q Consensus 57 EiqrLl~dNqR----LAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r 132 (246)
=|.+-+-|=|| |+--.|.|+.|+-++-..|...=+-+.+.=-|+| -+|-+|++.|.
T Consensus 154 nIEKSvKDLqRctvSL~RYr~~lkee~d~S~k~ik~~F~~l~~cL~dRE--------------------vaLl~EmdkVK 213 (302)
T PF07139_consen 154 NIEKSVKDLQRCTVSLTRYRVVLKEEMDSSIKKIKQTFAELQSCLMDRE--------------------VALLAEMDKVK 213 (302)
T ss_pred cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHH
Confidence 35555666665 4445778888887776555543332222222222 35778999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q 025912 133 ADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETER 177 (246)
Q Consensus 133 ~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lr 177 (246)
.|+..+...||.=...+..+|.=-.+. + =.|+-.|+|||.-.-
T Consensus 214 ~EAmeiL~aRqkkAeeLkrltd~A~~M-s-E~Ql~ELRadIK~fv 256 (302)
T PF07139_consen 214 AEAMEILDARQKKAEELKRLTDRASQM-S-EEQLAELRADIKHFV 256 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc-C-HHHHHHHHHHHHHHh
Confidence 999999999999888777777543322 2 246788888886543
No 274
>PRK11546 zraP zinc resistance protein; Provisional
Probab=53.32 E-value=87 Score=26.98 Aligned_cols=35 Identities=26% Similarity=0.220 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 53 IQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLS 90 (246)
Q Consensus 53 ~Q~~EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~ 90 (246)
.|.+.++.|. +.+.+.-..||++|.+-+.||+.|.
T Consensus 47 EQQa~~q~I~---~~f~~~t~~LRqqL~aKr~ELnALl 81 (143)
T PRK11546 47 EQQAAWQKIH---NDFYAQTSALRQQLVSKRYEYNALL 81 (143)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666664 4588889999999999999999883
No 275
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=53.18 E-value=1.4e+02 Score=25.25 Aligned_cols=76 Identities=21% Similarity=0.295 Sum_probs=48.0
Q ss_pred HHHHHHhhhhHHhhhchhhHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Q 025912 105 RELYEKSLKLDAELRVIESMHAELDRVRADI------------EKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAE 172 (246)
Q Consensus 105 ReL~ek~~KmEAelRa~e~lk~El~Q~r~e~------------q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aE 172 (246)
-..+.-..|||..|.....+++||..+-.|. |.|..+|.-.-..+.=++.|+.|.-. +|-.+..|
T Consensus 22 ~k~~~~rqkle~qL~Enk~V~~Eldlle~d~~VYKliGpvLvkqel~EAr~nV~kRlefI~~Eikr~e~---~i~d~q~e 98 (120)
T KOG3478|consen 22 EKYVESRQKLETQLQENKIVLEELDLLEEDSNVYKLIGPVLVKQELEEARTNVGKRLEFISKEIKRLEN---QIRDSQEE 98 (120)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhcccchHHHHhcchhhHHHHHHHHhhHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 4466778899999999999999999998874 34444555555555555666555432 23334444
Q ss_pred HHHHHHHHHhh
Q 025912 173 IETERQEIHKG 183 (246)
Q Consensus 173 id~lrqElqr~ 183 (246)
....|..+..+
T Consensus 99 ~~k~R~~v~k~ 109 (120)
T KOG3478|consen 99 FEKQREAVIKL 109 (120)
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 276
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=53.04 E-value=1e+02 Score=32.83 Aligned_cols=68 Identities=22% Similarity=0.341 Sum_probs=52.2
Q ss_pred hHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhh
Q 025912 114 LDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGR 184 (246)
Q Consensus 114 mEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~R 184 (246)
++...|-.++++-||.++.+--|+|++.=.++..++..+.+.+-+.+.|+ -+|+.+|+..+.-+..+|
T Consensus 81 ~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL---~~Lk~~ieqaq~~~~El~ 148 (907)
T KOG2264|consen 81 LREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLEL---SALKGEIEQAQRQLEELR 148 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHH---HHHHhHHHHHHHHHHHHH
Confidence 44455667889999999999999999999999999999988887777654 456677776665555444
No 277
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=52.71 E-value=1.8e+02 Score=26.24 Aligned_cols=26 Identities=23% Similarity=0.425 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 132 RADIEKLCVIKQEMIKDLNEINGDLA 157 (246)
Q Consensus 132 r~e~q~L~a~RQELs~qvq~ltqeL~ 157 (246)
|-||..|.+.|..+-.+||.|...|.
T Consensus 144 R~EaeQLQsLR~avRqElqELE~QL~ 169 (179)
T PF14723_consen 144 REEAEQLQSLRSAVRQELQELEFQLE 169 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666677777777777666554
No 278
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=52.63 E-value=2.7e+02 Score=28.35 Aligned_cols=44 Identities=11% Similarity=0.243 Sum_probs=24.5
Q ss_pred hhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhhhh
Q 025912 122 ESMHAELDRVRADIEKLCV----IKQEMIKDLNEINGDLAKARDESKD 165 (246)
Q Consensus 122 e~lk~El~Q~r~e~q~L~a----~RQELs~qvq~ltqeL~r~~~d~qq 165 (246)
.|+|.-|...+..|..+.. .|-.|..++..|.+--.+...|...
T Consensus 143 ~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~n~~i~~ea~n 190 (475)
T PRK10361 143 SPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQLNAQMAQEAIN 190 (475)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777666666665543 3445555555555444444444444
No 279
>PF11594 Med28: Mediator complex subunit 28; InterPro: IPR021640 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. Subunit Med28 of the Mediator may function as a scaffolding protein within Mediator by maintaining the stability of a submodule within the head module, and components of this submodule act together in a gene-regulatory programme to suppress smooth muscle cell differentiation. Thus, mammalian Mediator subunit Med28 functions as a repressor of smooth muscle-cell differentiation, which could have implications for disorders associated with abnormalities in smooth muscle cell growth and differentiation, including atherosclerosis, asthma, hypertension, and smooth muscle tumours [].
Probab=52.49 E-value=1.3e+02 Score=24.83 Aligned_cols=70 Identities=24% Similarity=0.310 Sum_probs=40.9
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhhhhhcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhHhhhHhHHHhhhhcCCCC
Q 025912 164 KDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANAEKRARAAAAAAAVNPSI 242 (246)
Q Consensus 164 qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEkNlisMarEvEKLRaElanaEkRa~a~~aaaa~np~~ 242 (246)
+.=-.|+.|++.|+.|++|.=..+ ....+.+++-+. +.+=+.-+-|.+.|+-| +.|-+-+..+.+..|.|
T Consensus 35 kpe~~lkEEi~eLK~ElqRKe~Ll----~Kh~~kI~~w~~----lL~d~~~~~k~~~evp~-e~~~~~~e~~~~~~~~~ 104 (106)
T PF11594_consen 35 KPEQVLKEEINELKEELQRKEQLL----QKHYEKIDYWEK----LLSDAQNQHKVPDEVPP-EARQRLAELATANIPAP 104 (106)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH----HHHHHHhhccCchhccc-hHHHHHHhhccCCCCCC
Confidence 334467888999999998776665 222233333332 25556666677777644 44555454555566655
No 280
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=52.41 E-value=1.6e+02 Score=26.74 Aligned_cols=20 Identities=35% Similarity=0.491 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 025912 73 VALKQELSLAEQELRHLSSV 92 (246)
Q Consensus 73 vaLrQeL~aaq~El~~l~~~ 92 (246)
|.||.||+.....|......
T Consensus 99 vrLkrELa~Le~~l~~~~~~ 118 (195)
T PF12761_consen 99 VRLKRELAELEEKLSKVEQA 118 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55666666655555554433
No 281
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=52.29 E-value=1.7e+02 Score=28.43 Aligned_cols=92 Identities=21% Similarity=0.326 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhc-hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 70 ATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRV-IESMHAELDRVRADIEKLCVIKQEMIKD 148 (246)
Q Consensus 70 atHvaLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa-~e~lk~El~Q~r~e~q~L~a~RQELs~q 148 (246)
.+--+||--+.+.+.+++.++..+.++..+ ||.|-+ ++-=|.|+.+.|--..+|.+.|=--+.+
T Consensus 105 e~Ekvlk~aIq~i~~~~q~~~~~Lnnvasd---------------ea~L~~Kierrk~ElEr~rkRle~LqsiRP~~MdE 169 (338)
T KOG3647|consen 105 EVEKVLKSAIQAIQVRLQSSRAQLNNVASD---------------EAALGSKIERRKAELERTRKRLEALQSIRPAHMDE 169 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 344444444444455555444444444433 444433 3556778888888888888888777777
Q ss_pred HHHHHHHHHHHh----hhhhhhHHHHHHHHHH
Q 025912 149 LNEINGDLAKAR----DESKDMAAIKAEIETE 176 (246)
Q Consensus 149 vq~ltqeL~r~~----~d~qqip~l~aEid~l 176 (246)
-.....+|+++- -..+.+..|+..+|..
T Consensus 170 yE~~EeeLqkly~~Y~l~f~nl~yL~~qldd~ 201 (338)
T KOG3647|consen 170 YEDCEEELQKLYQRYFLRFHNLDYLKSQLDDR 201 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 777777776643 3445566666666654
No 282
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=51.86 E-value=2.4e+02 Score=27.56 Aligned_cols=113 Identities=19% Similarity=0.228 Sum_probs=75.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-------------hhhHHHHHHH-----------HHHHh
Q 025912 56 SDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASV-------------KAERDAEVRE-----------LYEKS 111 (246)
Q Consensus 56 ~EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~i-------------~aE~e~qiRe-----------L~ek~ 111 (246)
+.|..--.+|+.|-++..+|++.++....+..-+...++.. +.|.|.|.|. |--|.
T Consensus 90 a~i~etkeeNlkLrTd~eaL~dq~adLhgD~elfReTeAq~ese~~a~aseNaarneeelqwrrdeanfic~~EgLkak~ 169 (389)
T KOG4687|consen 90 ADIEETKEENLKLRTDREALLDQKADLHGDCELFRETEAQFESEKMAGASENAARNEEELQWRRDEANFICAHEGLKAKC 169 (389)
T ss_pred HHHHHHHHHhHhhhHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcccccccccchHHHHhhHHHHHHHHHHHHHHHHh
Confidence 45555667899999999999999999888888877776654 4556666662 33344
Q ss_pred hhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Q 025912 112 LKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQE 179 (246)
Q Consensus 112 ~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqE 179 (246)
.-|+-||+++=..| ..|...|.++.-++..|+.||--+-.--+.-|.+ .+||++--|
T Consensus 170 a~LafDLkamideK----------EELimERDa~kcKa~RLnhELfvaLnadkrhpr~-~DiDgll~E 226 (389)
T KOG4687|consen 170 AGLAFDLKAMIDEK----------EELIMERDAMKCKAARLNHELFVALNADKRHPRA-EDIDGLLAE 226 (389)
T ss_pred hhhhhHHHHHhchH----------HHHHHHHHHHHHHHHHhhhHHHHHHcCCCCCchh-hhhHHHHHh
Confidence 44555555544444 3456778888889999999987654433444433 356666555
No 283
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=51.70 E-value=1.1e+02 Score=27.14 Aligned_cols=47 Identities=30% Similarity=0.496 Sum_probs=30.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHhhhhhhhHHHH
Q 025912 121 IESMHAELDRVRADIEKLCVIKQEMIKD---------------LNEINGDLAKARDESKDMAAIK 170 (246)
Q Consensus 121 ~e~lk~El~Q~r~e~q~L~a~RQELs~q---------------vq~ltqeL~r~~~d~qqip~l~ 170 (246)
.+.+|.||.++-.||+.| ||-|.++ +..|+++|.+-.-|+|..-+.+
T Consensus 31 ~eeLr~EL~KvEeEI~TL---rqvL~aKer~~~eLKrkLGit~l~elkqnlskg~~~vq~S~aY~ 92 (162)
T PF04201_consen 31 REELRSELAKVEEEIQTL---RQVLAAKERHCAELKRKLGITPLSELKQNLSKGWHDVQDSNAYK 92 (162)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHhHHHHHHHHCCchHHHHHHHHHHHhHhhhchhHHH
Confidence 466788888888877744 4444443 3456777777666776666655
No 284
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=51.44 E-value=1.5e+02 Score=25.19 Aligned_cols=66 Identities=14% Similarity=0.153 Sum_probs=51.4
Q ss_pred hHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHh
Q 025912 46 HLEDRIAIQHSDIQSLLQDNQRLAATHVALKQEL---SLAEQELRHLSSVAASVKAERDAEVRELYEKS 111 (246)
Q Consensus 46 ~LEe~La~Q~~EiqrLl~dNqRLAatHvaLrQeL---~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~ 111 (246)
.|-..++.+...+...-.+|..+..+.-.|.++. ..+|..|+.........-+.++.+|++|++-.
T Consensus 23 ~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~EN 91 (135)
T TIGR03495 23 NARADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKREN 91 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4666778888888888888888888888888877 55777777777777777777888887776644
No 285
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=51.37 E-value=87 Score=24.29 Aligned_cols=43 Identities=28% Similarity=0.403 Sum_probs=23.9
Q ss_pred hHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 46 HLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSS 91 (246)
Q Consensus 46 ~LEe~La~Q~~EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~ 91 (246)
-+|.+|..|-.||+.+-.-=--|=.+|..+|+.- +.||.+|+.
T Consensus 29 e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~Y---EeEI~rLr~ 71 (79)
T PF08581_consen 29 EYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQY---EEEIARLRR 71 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 4555666666666655555445555666666544 455555543
No 286
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=51.18 E-value=1.5e+02 Score=24.95 Aligned_cols=52 Identities=17% Similarity=0.380 Sum_probs=23.6
Q ss_pred HHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025912 107 LYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARD 161 (246)
Q Consensus 107 L~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~ 161 (246)
..+|.-.+|+.++. +..+..+.--+|..|..--+-|-.+|..+...|..+..
T Consensus 12 a~~r~e~~e~~~K~---le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~ 63 (143)
T PF12718_consen 12 AQDRAEELEAKVKQ---LEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKE 63 (143)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555332 22334444444444444444444444444444444443
No 287
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=50.78 E-value=2.4e+02 Score=27.14 Aligned_cols=97 Identities=19% Similarity=0.382 Sum_probs=57.3
Q ss_pred hchhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHh---hhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcc
Q 025912 119 RVIESMHAELDRVRADIEKLC---VIKQEMIKDLNEINGDLAKAR---DESKDMAAIKAEIETERQEIHKGRAAIECEKK 192 (246)
Q Consensus 119 Ra~e~lk~El~Q~r~e~q~L~---a~RQELs~qvq~ltqeL~r~~---~d~qqip~l~aEid~lrqElqr~Raa~EyEKK 192 (246)
++.++++.++..+.--.+... ..=.+|..++..|.++|.... ..+-++-.|.+|++.++.+.--.+--|
T Consensus 107 ~~~~~ler~i~~Le~~~~T~~L~~e~E~~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki----- 181 (294)
T COG1340 107 RSIKSLEREIERLEKKQQTSVLTPEEERELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKI----- 181 (294)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 344555555555544333321 122345666666666666554 344456666677777666554444332
Q ss_pred cccchhHHHHHHHHhHHHHHHHHHHHHHHH
Q 025912 193 NRASNHEQREIMEKNIISVAQQIERLQAEL 222 (246)
Q Consensus 193 ~~~e~~Eq~qaMEkNlisMarEvEKLRaEl 222 (246)
.+..+|.|..-.-|+.+-++++.+|.+.
T Consensus 182 --~~la~eaqe~he~m~k~~~~~De~Rkea 209 (294)
T COG1340 182 --QELANEAQEYHEEMIKLFEEADELRKEA 209 (294)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777888888888888888888764
No 288
>PF07445 priB_priC: Primosomal replication protein priB and priC; InterPro: IPR010890 This family contains the bacterial primosomal replication proteins priB and priC (approximately 180 residues long). In Escherichia coli, these function in the assembly of the primosome [].
Probab=50.68 E-value=1.1e+02 Score=26.55 Aligned_cols=61 Identities=16% Similarity=0.252 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhhhh
Q 025912 127 ELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIEC 189 (246)
Q Consensus 127 El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~Ey 189 (246)
-+.+++.+..+...-..-|.+.|+....-|..+.+. .-+.+.-||..+.+=++|||.|+++
T Consensus 103 ~~~~Lyq~L~~hqe~erRL~~mi~~~e~~l~~~~~~--~~~~lq~ei~a~e~RL~RCr~Ai~~ 163 (173)
T PF07445_consen 103 PIHQLYQRLAQHQEYERRLLAMIQEREQQLEQAQSF--EQQQLQQEILALEQRLQRCRQAIEK 163 (173)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555556666666666666666665 5677888999999999999999974
No 289
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=50.28 E-value=1.2e+02 Score=23.66 Aligned_cols=25 Identities=20% Similarity=0.363 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 125 HAELDRVRADIEKLCVIKQEMIKDL 149 (246)
Q Consensus 125 k~El~Q~r~e~q~L~a~RQELs~qv 149 (246)
-..+++++.+.++|...++.|..+.
T Consensus 5 ~~~~q~l~~~~~~l~~~~~~l~~~~ 29 (105)
T cd00632 5 LAQLQQLQQQLQAYIVQRQKVEAQL 29 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666665554
No 290
>PF03245 Phage_lysis: Bacteriophage Rz lysis protein; InterPro: IPR004929 Many bacteriophages with Gram-negative hosts contain two auxiliary lysis genes Rz and Rz1. These genes are nested, with Rz1 occupying the last third of Rz in a +1 reading frame. Both of these genes are required for host cell lysis if the outer membrane is stabilised by millimolar concentrations of divalent cations, but are otherwise uneccessary []. The Rz protein is believed to posses endopeptidase activity, while Rz1 encodes a prolipoprotein which, after cleavage by a signal peptidase, is located in the outer membrane. It has been suggested that these two proteins may form a complex which cleaves the oligopeptide crosslinks between glycosidic strands in the peptidoglycan and the Lpp lipoproteins of the outer bacterial membrane. For more information see []. This entry represents the Rz protein and related sequences. This family is not considered to be a peptidase according to the MEROPs database.; GO: 0019835 cytolysis
Probab=49.80 E-value=36 Score=28.01 Aligned_cols=28 Identities=39% Similarity=0.605 Sum_probs=21.3
Q ss_pred HhHHHHHHHHHHHHHHHhhHhhhHhHHH
Q 025912 206 KNIISVAQQIERLQAELANAEKRARAAA 233 (246)
Q Consensus 206 kNlisMarEvEKLRaElanaEkRa~a~~ 233 (246)
|.|-.--.|+++||+.|++-.+|-+-.+
T Consensus 42 kEL~~Ak~e~~~Lr~dl~aG~~RL~v~a 69 (125)
T PF03245_consen 42 KELADAKAEIDRLRADLAAGNKRLRVKA 69 (125)
T ss_pred HHHHHHHhhHHHHHHHHHcCCceEEEec
Confidence 4455566789999999999999966433
No 291
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=49.63 E-value=5.5 Score=42.19 Aligned_cols=112 Identities=19% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh---HHHHHHHHHHHhhhhHHhhhchhhHHH
Q 025912 50 RIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAE---RDAEVRELYEKSLKLDAELRVIESMHA 126 (246)
Q Consensus 50 ~La~Q~~EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~i~aE---~e~qiReL~ek~~KmEAelRa~e~lk~ 126 (246)
+|..-..++..+-..+..|--+.-.|..|+..+.-+|...+..+..+... -|.++-++-.+...+- -..+.+..
T Consensus 329 ~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~---~e~d~~q~ 405 (859)
T PF01576_consen 329 KLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQ---AERDAAQR 405 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 33334444444445555555666667777777777777766555443321 1222222222222221 12334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 025912 127 ELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESK 164 (246)
Q Consensus 127 El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~q 164 (246)
|...+.+++-+|...-.++..++..+..+...++.++.
T Consensus 406 e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~ 443 (859)
T PF01576_consen 406 EARELETELFKLKNELEELQEQLEELERENKQLQDELE 443 (859)
T ss_dssp --------------------------------------
T ss_pred HhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 44444455555544444444444444444444444333
No 292
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=49.61 E-value=2.9e+02 Score=27.92 Aligned_cols=8 Identities=38% Similarity=0.663 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 025912 82 AEQELRHL 89 (246)
Q Consensus 82 aq~El~~l 89 (246)
+++|+...
T Consensus 56 aeeE~~~~ 63 (514)
T TIGR03319 56 AKEEVHKL 63 (514)
T ss_pred HHHHHHHH
Confidence 33444333
No 293
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=49.22 E-value=99 Score=29.10 Aligned_cols=92 Identities=21% Similarity=0.309 Sum_probs=50.0
Q ss_pred hhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHhhhh---hhhhh
Q 025912 118 LRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESK----DMAAIKAEIETERQEIHKGRA---AIECE 190 (246)
Q Consensus 118 lRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~q----qip~l~aEid~lrqElqr~Ra---a~EyE 190 (246)
.+.+.|++..+.++..+..+....-++...+++.+...|+.++.+.+ +.-.|..+++....-+.|+.. ++.-|
T Consensus 213 ~~~V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E 292 (344)
T PF12777_consen 213 NKEVEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGE 292 (344)
T ss_dssp CCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcch
Confidence 34567777777776666555555555555555555555554444332 233455556666666665554 34456
Q ss_pred cccccchhHHHHHHHHhHH
Q 025912 191 KKNRASNHEQREIMEKNII 209 (246)
Q Consensus 191 KK~~~e~~Eq~qaMEkNli 209 (246)
+..-.+.+++...-.++++
T Consensus 293 ~~RW~~~~~~l~~~~~~l~ 311 (344)
T PF12777_consen 293 KERWSEQIEELEEQLKNLV 311 (344)
T ss_dssp HHCCHCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhcccH
Confidence 6666555555544444443
No 294
>PRK15396 murein lipoprotein; Provisional
Probab=49.15 E-value=62 Score=25.20 Aligned_cols=13 Identities=23% Similarity=0.634 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 025912 127 ELDRVRADIEKLC 139 (246)
Q Consensus 127 El~Q~r~e~q~L~ 139 (246)
++.|+.++|+.|.
T Consensus 26 kvd~LssqV~~L~ 38 (78)
T PRK15396 26 KIDQLSSDVQTLN 38 (78)
T ss_pred hHHHHHHHHHHHH
Confidence 3334444444333
No 295
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=49.14 E-value=1.1e+02 Score=25.10 Aligned_cols=40 Identities=15% Similarity=0.284 Sum_probs=18.2
Q ss_pred HHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 105 RELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIK 147 (246)
Q Consensus 105 ReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~ 147 (246)
++|+|+...||..+. .+-+++..+...++.|...=..|.-
T Consensus 4 ~elfd~l~~le~~l~---~l~~el~~LK~~~~el~EEN~~L~i 43 (110)
T PRK13169 4 KEIFDALDDLEQNLG---VLLKELGALKKQLAELLEENTALRL 43 (110)
T ss_pred hHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666665532 2333444444433333333333333
No 296
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=48.78 E-value=1e+02 Score=28.35 Aligned_cols=26 Identities=31% Similarity=0.561 Sum_probs=13.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 122 ESMHAELDRVRADIEKLCVIKQEMIK 147 (246)
Q Consensus 122 e~lk~El~Q~r~e~q~L~a~RQELs~ 147 (246)
+.+..|+.|++.+-|+|...||-|.+
T Consensus 48 ~~L~~e~~~l~~eqQ~l~~er~~l~~ 73 (228)
T PRK06800 48 KSLHKELNQLRQEQQKLERERQQLLA 73 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555554443
No 297
>PF05465 Halo_GVPC: Halobacterial gas vesicle protein C (GVPC) repeat; InterPro: IPR008639 This family consists of Halobacterium gas vesicle protein C sequences which are thought to confer stability to the gas vesicle membranes [,].; GO: 0031412 gas vesicle organization, 0031411 gas vesicle
Probab=48.69 E-value=22 Score=23.30 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhh
Q 025912 166 MAAIKAEIETERQEIHKGRAAIE 188 (246)
Q Consensus 166 ip~l~aEid~lrqElqr~Raa~E 188 (246)
|..|.++|+.+|.|+.-.+.+|+
T Consensus 1 V~~l~a~I~~~r~~f~~~~~aF~ 23 (32)
T PF05465_consen 1 VSDLLAAIAEFREEFDDTQDAFE 23 (32)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999886
No 298
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=48.38 E-value=1.8e+02 Score=25.03 Aligned_cols=35 Identities=14% Similarity=0.254 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Q 025912 66 QRLAATHVALKQELSLAEQELRHLSSVAASVKAER 100 (246)
Q Consensus 66 qRLAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~ 100 (246)
+.|++.+-.|.+++...+.++..|+..+.++++=.
T Consensus 9 e~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~ 43 (145)
T COG1730 9 EELAAQLQILQSQIESLQAQIAALNAAISELQTAI 43 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777777777777766543
No 299
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=48.20 E-value=3.6e+02 Score=28.54 Aligned_cols=118 Identities=14% Similarity=0.238 Sum_probs=80.1
Q ss_pred HHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchhhHHHHHH
Q 025912 50 RIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELD 129 (246)
Q Consensus 50 ~La~Q~~EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~lk~El~ 129 (246)
=+..=..+|+.|+.+|=....+|+ ..+|..+- ......++.+-+..+-..++.+..|-.. +...+..|.
T Consensus 188 ~l~~~~~qi~~l~~~ny~~~~~~v--~~~L~~~~------~~lg~~i~~~l~~~~~~~L~~i~~l~~~---~~~~~~~L~ 256 (806)
T PF05478_consen 188 FLNDTPQQIDHLLVQNYSELKDHV--SSDLDNIG------SLLGGDIQDQLGSNVYPALDSILDLAQA---MQETKELLQ 256 (806)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHH--HHHHHhcc------chhhHHHHHHHhhhhHHHHHHHHHHHHH---HHHHHHHHH
Confidence 344556778888888877766654 33444333 3345677777788888888888777664 555666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----------------------hhhhHHHHHHHHHHHH
Q 025912 130 RVRADIEKLCVIKQEMIKDLNEINGDLAKARDE----------------------SKDMAAIKAEIETERQ 178 (246)
Q Consensus 130 Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d----------------------~qqip~l~aEid~lrq 178 (246)
++.....+|...-++|..-+.++..+|.....+ ..|+|.+...++++..
T Consensus 257 ~v~~~~~~L~~~~~qL~~~L~~vK~~L~~~l~~~C~~~~C~~i~~~~~~l~l~~~~~qLP~v~~~l~~l~~ 327 (806)
T PF05478_consen 257 NVNSSLKDLQEYQSQLRDGLRGVKRDLNNTLQDLCTNRECNSILSSLDILQLDADFSQLPNVTSQLNNLEE 327 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhHHHHHhccccccCCCcccCCChHHHHHHHHH
Confidence 777777777777777777776666666665544 4468888888888775
No 300
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=47.64 E-value=36 Score=28.97 Aligned_cols=34 Identities=12% Similarity=0.333 Sum_probs=22.8
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhhh
Q 025912 155 DLAKARDESKDMAAIKAEIETERQEIHKGRAAIE 188 (246)
Q Consensus 155 eL~r~~~d~qqip~l~aEid~lrqElqr~Raa~E 188 (246)
|-+|.---.-++..+.+|++.+.+++...|+.|+
T Consensus 64 eFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~ 97 (161)
T PF04420_consen 64 EFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFD 97 (161)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455677777777777777777777665
No 301
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=47.52 E-value=2.2e+02 Score=25.79 Aligned_cols=57 Identities=9% Similarity=0.194 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhh
Q 025912 131 VRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAI 187 (246)
Q Consensus 131 ~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~ 187 (246)
...++..+.+.......++....+++.|.+.=.++--.-+.++|..+.++..+++.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~l~~a~~~~~R~~~L~~~g~iS~~~~d~~~~~~~~a~~~l 151 (327)
T TIGR02971 95 LFKDVAAQQATLNRLEAELETAQREVDRYRSLFRDGAVSASDLDSKALKLRTAEEEL 151 (327)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHH
Confidence 333444444444444555555555555555444443333455555555444444433
No 302
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=47.20 E-value=1.2e+02 Score=22.78 Aligned_cols=44 Identities=23% Similarity=0.341 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhh
Q 025912 138 LCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECE 190 (246)
Q Consensus 138 L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyE 190 (246)
|...+++|..++....++ ..-.|.+.++.+.+.+..++.+++|=
T Consensus 55 L~~~e~~ll~~l~~~~~~---------~~~~l~~q~~~l~~~l~~l~~~~~~~ 98 (127)
T smart00502 55 LNKRKKQLLEDLEEQKEN---------KLKVLEQQLESLTQKQEKLSHAINFT 98 (127)
T ss_pred HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555554444433 22345555666666666666666653
No 303
>PLN02678 seryl-tRNA synthetase
Probab=46.67 E-value=1.8e+02 Score=29.02 Aligned_cols=25 Identities=12% Similarity=0.191 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 127 ELDRVRADIEKLCVIKQEMIKDLNE 151 (246)
Q Consensus 127 El~Q~r~e~q~L~a~RQELs~qvq~ 151 (246)
+..++..++..|.+.|..++.++..
T Consensus 41 ~~r~l~~~~e~lr~erN~~sk~I~~ 65 (448)
T PLN02678 41 EWRQRQFELDSLRKEFNKLNKEVAK 65 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555555566666665544
No 304
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=46.42 E-value=3.4e+02 Score=27.69 Aligned_cols=20 Identities=25% Similarity=0.303 Sum_probs=9.4
Q ss_pred HHhHHHHHHHHHHHHHHHhh
Q 025912 205 EKNIISVAQQIERLQAELAN 224 (246)
Q Consensus 205 EkNlisMarEvEKLRaElan 224 (246)
++|+-.=+.-++.+-.||+|
T Consensus 202 ~~~la~r~~a~q~r~~ela~ 221 (499)
T COG4372 202 AQNLATRANAAQARTEELAR 221 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 305
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=45.87 E-value=2.6e+02 Score=26.31 Aligned_cols=93 Identities=17% Similarity=0.351 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 70 ATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDL 149 (246)
Q Consensus 70 atHvaLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qv 149 (246)
..=.+|+.-+..++++++.+...+.++..|. ..||+. ++--|.||...+.-.+.|.++|=--+.+-
T Consensus 162 ~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de-----------~~Le~K---Iekkk~ELER~qKRL~sLq~vRPAfmdEy 227 (267)
T PF10234_consen 162 EIEKALKEAIKAVQQQLQQTQQQLNNLASDE-----------ANLEAK---IEKKKQELERNQKRLQSLQSVRPAFMDEY 227 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHH---HHHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 3334555555666666666666666555553 223333 46668899999999999999998888888
Q ss_pred HHHHHHHHHHhhh----hhhhHHHHHHHHHH
Q 025912 150 NEINGDLAKARDE----SKDMAAIKAEIETE 176 (246)
Q Consensus 150 q~ltqeL~r~~~d----~qqip~l~aEid~l 176 (246)
..+..||++.-.. .-.+--|..++|..
T Consensus 228 EklE~EL~~lY~~Y~~kfRNl~yLe~qle~~ 258 (267)
T PF10234_consen 228 EKLEEELQKLYEIYVEKFRNLDYLEHQLEEY 258 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 8888888775432 22244555555543
No 306
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=45.60 E-value=1.1e+02 Score=24.35 Aligned_cols=34 Identities=9% Similarity=0.315 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025912 127 ELDRVRADIEKLCVIKQEMIKDLNEINGDLAKAR 160 (246)
Q Consensus 127 El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~ 160 (246)
++.|+.++|+.|.+-=..++..|+.+..+..-++
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk 58 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAK 58 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555444444444444444443333
No 307
>PHA02414 hypothetical protein
Probab=44.81 E-value=98 Score=25.70 Aligned_cols=73 Identities=19% Similarity=0.282 Sum_probs=56.9
Q ss_pred hHHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-----hhHHHHHHH
Q 025912 99 ERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESK-----DMAAIKAEI 173 (246)
Q Consensus 99 E~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~q-----qip~l~aEi 173 (246)
|.|-+|-.|+.++..+|..+.-++-.. +++-..|..+=.||-.=|-++.+|++ .+++.| ||.-|..-|
T Consensus 1 ~~D~~in~Lv~~v~~ledKiQ~Gelt~------kgdn~eL~~av~ELRdivvslDKd~A-v~sEKqshi~yQi~~Lee~i 73 (111)
T PHA02414 1 EMDKEINNLVSQVETLEDKIQEGELTD------KGDNKELEVAVAELRDIVVSLDKDVA-VNSEKQSHIYYQIERLEEKI 73 (111)
T ss_pred CcchHHHHHHHHHHHHHHHHhcCcccc------CCchHHHHHHHHHHHHHHHHhhhHhh-hhHHHhhHHHHHHHHHHHHH
Confidence 457788999999999999998887665 35788888888899999999999987 455555 466666666
Q ss_pred HHHHH
Q 025912 174 ETERQ 178 (246)
Q Consensus 174 d~lrq 178 (246)
+.|++
T Consensus 74 ~aL~~ 78 (111)
T PHA02414 74 SALAE 78 (111)
T ss_pred HHHHh
Confidence 66654
No 308
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=44.60 E-value=2.3e+02 Score=25.24 Aligned_cols=97 Identities=19% Similarity=0.281 Sum_probs=50.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----hhhHHHHHHHHHHHHHHHhhhhhhhhhcccccch
Q 025912 122 ESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDES----KDMAAIKAEIETERQEIHKGRAAIECEKKNRASN 197 (246)
Q Consensus 122 e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~----qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~ 197 (246)
+.+-..|..+..-+.....--.|...++..+..+|.++-.-+ .++..|..+|..+..-+..+-...+
T Consensus 95 ~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~--------- 165 (237)
T PF00261_consen 95 EELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEE--------- 165 (237)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhh---------
Confidence 344455555555555556666667777777777776644322 3355555555555555554444332
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHhhHhhhHhHH
Q 025912 198 HEQREIMEKNIISVAQQIERLQAELANAEKRARAA 232 (246)
Q Consensus 198 ~Eq~qaMEkNlisMarEvEKLRaElanaEkRa~a~ 232 (246)
........+-..|..|...|.+++.|+-.+
T Consensus 166 -----~~~~re~~~e~~i~~L~~~lkeaE~Rae~a 195 (237)
T PF00261_consen 166 -----KASEREDEYEEKIRDLEEKLKEAENRAEFA 195 (237)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000111223334555666666666665443
No 309
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=44.45 E-value=3e+02 Score=26.55 Aligned_cols=98 Identities=18% Similarity=0.317 Sum_probs=67.9
Q ss_pred hHHHHHHhhHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchhhH
Q 025912 46 HLEDRIAIQHSDIQSLLQD-NQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESM 124 (246)
Q Consensus 46 ~LEe~La~Q~~EiqrLl~d-NqRLAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~l 124 (246)
+|+|++-.=...|..-..+ +..|.+--|+|--||--.++|-..|- ..+-.+=..++.+.|++..|..+
T Consensus 175 ~lkee~d~S~k~ik~~F~~l~~cL~dREvaLl~EmdkVK~EAmeiL----~aRqkkAeeLkrltd~A~~MsE~------- 243 (302)
T PF07139_consen 175 VLKEEMDSSIKKIKQTFAELQSCLMDREVALLAEMDKVKAEAMEIL----DARQKKAEELKRLTDRASQMSEE------- 243 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhcCHH-------
Confidence 4666666655556544443 45667778999999999998866543 33445566789999999999754
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Q 025912 125 HAELDRVRADIEKLCVIKQ--EMIKDLNEINGDL 156 (246)
Q Consensus 125 k~El~Q~r~e~q~L~a~RQ--ELs~qvq~ltqeL 156 (246)
.|..+|+||+-+++.|+ |=.+++-.++=|+
T Consensus 244 --Ql~ELRadIK~fvs~rk~de~lg~~~rf~~d~ 275 (302)
T PF07139_consen 244 --QLAELRADIKHFVSERKYDEELGRAARFTCDP 275 (302)
T ss_pred --HHHHHHHHHHHHhhhhhhHHHHhHhhhcccCH
Confidence 68889999999999996 3334444444433
No 310
>PRK15396 murein lipoprotein; Provisional
Probab=44.20 E-value=1e+02 Score=24.05 Aligned_cols=39 Identities=18% Similarity=0.359 Sum_probs=21.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025912 122 ESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKAR 160 (246)
Q Consensus 122 e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~ 160 (246)
+.|..+++.+.+++..|...=+.+...++....|-.|+.
T Consensus 28 d~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN 66 (78)
T PRK15396 28 DQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARAN 66 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555555555543
No 311
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=43.86 E-value=3.6e+02 Score=28.28 Aligned_cols=29 Identities=17% Similarity=0.197 Sum_probs=10.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 025912 59 QSLLQDNQRLAATHVALKQELSLAEQELR 87 (246)
Q Consensus 59 qrLl~dNqRLAatHvaLrQeL~aaq~El~ 87 (246)
+.+-.+|-|+-...-.|=-+|+.+|+++.
T Consensus 222 ~~kt~el~~q~Ee~skLlsql~d~qkk~k 250 (596)
T KOG4360|consen 222 QSKTKELSRQQEENSKLLSQLVDLQKKIK 250 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 33333333333333333333333333333
No 312
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=43.84 E-value=1.4e+02 Score=22.44 Aligned_cols=38 Identities=18% Similarity=0.342 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 025912 144 EMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIH 181 (246)
Q Consensus 144 ELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElq 181 (246)
++..+++.++.++....+..+++-.-..+++....||.
T Consensus 2 e~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~ 39 (106)
T PF01920_consen 2 ELQNKFQELNQQLQQLEQQIQQLERQLRELELTLEELE 39 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444433333333334444444443
No 313
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=43.82 E-value=70 Score=34.38 Aligned_cols=68 Identities=16% Similarity=0.327 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhh----hhhhhhcccccchhHHHHHHHHhHHHHHHH
Q 025912 139 CVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGR----AAIECEKKNRASNHEQREIMEKNIISVAQQ 214 (246)
Q Consensus 139 ~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~R----aa~EyEKK~~~e~~Eq~qaMEkNlisMarE 214 (246)
.+++.=|.+|||.|..|-+- ||.----..-+| +.+|+-.|.+--++...++=|+.|.+++||
T Consensus 381 ~~v~~gl~aq~~al~~era~--------------l~a~w~rv~egrr~v~~mv~~grk~~~~~~~e~~ar~~~l~~v~re 446 (828)
T PF04094_consen 381 STVREGLNAQVQALAAERAA--------------LDAEWARVDEGRRAVDAMVEVGRKAHQAHLAEIQAREETLDSVMRE 446 (828)
T ss_pred hHHhhhhhhHHHHHHHHHHH--------------HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788888887776333 222222334455 678889999999999999999999999999
Q ss_pred HHHHHH
Q 025912 215 IERLQA 220 (246)
Q Consensus 215 vEKLRa 220 (246)
+|.=|.
T Consensus 447 ~eeer~ 452 (828)
T PF04094_consen 447 TEEERQ 452 (828)
T ss_pred HHHHHH
Confidence 997663
No 314
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=43.78 E-value=4e+02 Score=27.76 Aligned_cols=42 Identities=17% Similarity=0.440 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhh
Q 025912 143 QEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGR 184 (246)
Q Consensus 143 QELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~R 184 (246)
.+|-.....+..||+.+......+-.|.++++.+++++..+=
T Consensus 321 ~~l~~~~~~~~~el~~L~~~~~~~~~Le~~~~~l~~~~~~~A 362 (557)
T COG0497 321 EDLLEYLDKIKEELAQLDNSEESLEALEKEVKKLKAELLEAA 362 (557)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444433
No 315
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=43.51 E-value=3.1e+02 Score=26.50 Aligned_cols=53 Identities=19% Similarity=0.317 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH----HHHhhhhhhhhh
Q 025912 135 IEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQ----EIHKGRAAIECE 190 (246)
Q Consensus 135 ~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrq----Elqr~Raa~EyE 190 (246)
+++|...+-.+..+++.++.++ .....+++.+.+++.++++ |+.+.-+...-+
T Consensus 287 i~~Lr~~~~~~~~~~~~l~~~~---~~~~p~~~~~~~q~~~~~~~~~~e~~~~~~~~~~~ 343 (458)
T COG3206 287 IQDLRQQYAQVRQQIADLSTEL---GAKHPQLVALEAQLAELRQQIAAELRQILASLPNE 343 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh---cccChHHHhHHHHHHHHHHHHHHHHHHHHHhchhH
Confidence 4444444444444555555553 3444555666666655544 444444444433
No 316
>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]
Probab=43.49 E-value=3.6e+02 Score=27.17 Aligned_cols=73 Identities=18% Similarity=0.212 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhHhhh-HhHHH-----hhhhcCCC
Q 025912 168 AIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANAEKR-ARAAA-----AAAAVNPS 241 (246)
Q Consensus 168 ~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEkNlisMarEvEKLRaElanaEkR-a~a~~-----aaaa~np~ 241 (246)
..+..++++++-+ ..-+.-+=+.....+|+...+--++-+|++|+-.|-+=|.|.-+| .||-. ...++.++
T Consensus 136 ~~~~~~e~f~e~l---~~~~~~s~~~~~~~~~~i~~~lg~~~~la~e~~~Lt~~Lk~~ktrG~wGEv~Le~ILe~~gl~~ 212 (448)
T COG1322 136 PLREVLEKFREQL---EQRIHESAEERSTLLEEIDRLLGEIQQLAQEAGNLTAALKGNKTRGNWGEVQLERILEDSGLRE 212 (448)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHhCchh
Confidence 3344445555432 334555556788899999999999999999999999999997666 45532 23355555
Q ss_pred CC
Q 025912 242 IY 243 (246)
Q Consensus 242 ~~ 243 (246)
.|
T Consensus 213 ~~ 214 (448)
T COG1322 213 GY 214 (448)
T ss_pred cc
Confidence 55
No 317
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=43.31 E-value=1.3e+02 Score=22.17 Aligned_cols=58 Identities=31% Similarity=0.420 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHh
Q 025912 53 IQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAE 117 (246)
Q Consensus 53 ~Q~~EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAe 117 (246)
.|..+|+.+..+++. ....+++++.....||..+-. +=..+. ..++.+++++....++
T Consensus 45 eQ~~~l~~~~~~~~~---~~~~~r~~~~~~r~~l~~ll~---~~~~D~-~~i~a~~~~~~~~~~~ 102 (125)
T PF13801_consen 45 EQQAKLRALMDEFRQ---EMRALRQELRAARQELRALLA---APPPDE-AAIEALLEEIREAQAE 102 (125)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHC---CSSS-H-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHc---CCCCCH-HHHHHHHHHHHHHHHH
Confidence 466677777766653 566677777777777755422 112222 2355555555444444
No 318
>PRK00106 hypothetical protein; Provisional
Probab=43.06 E-value=3.9e+02 Score=27.49 Aligned_cols=9 Identities=22% Similarity=0.342 Sum_probs=5.2
Q ss_pred hHhhhHhHH
Q 025912 224 NAEKRARAA 232 (246)
Q Consensus 224 naEkRa~a~ 232 (246)
+|++.|+-.
T Consensus 200 ~a~~~a~~i 208 (535)
T PRK00106 200 RSDKMAKDL 208 (535)
T ss_pred HHHHHHHHH
Confidence 566666544
No 319
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=43.00 E-value=51 Score=24.67 Aligned_cols=35 Identities=14% Similarity=0.253 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHhhhhhh-hHHHHHHHHHHHHHH
Q 025912 146 IKDLNEINGDLAKARDESKD-MAAIKAEIETERQEI 180 (246)
Q Consensus 146 s~qvq~ltqeL~r~~~d~qq-ip~l~aEid~lrqEl 180 (246)
..+|+.+.+-+.=++.+-.+ +-.|.+||+.|+++-
T Consensus 2 ~~qv~s~e~~i~FLq~eH~~tL~~LH~EIe~Lq~~~ 37 (60)
T PF14916_consen 2 EQQVQSLEKSILFLQQEHAQTLKGLHAEIERLQKRN 37 (60)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45777777777777766555 778888888888764
No 320
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=42.92 E-value=1.8e+02 Score=23.61 Aligned_cols=65 Identities=17% Similarity=0.198 Sum_probs=35.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhhh
Q 025912 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIE 188 (246)
Q Consensus 121 ~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~E 188 (246)
.+.+-.++.+...-+.++...-.--..+++...++-.+... .|-.++.+|+.|+.+|..++....
T Consensus 48 ~e~~l~~l~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~---~i~~~k~~ie~lk~~L~~ak~~r~ 112 (139)
T PF05615_consen 48 YERLLKELAQFEFSILKSQLILEMNKRERENYEQLNEEIEQ---EIEQAKKEIEELKEELEEAKRVRQ 112 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666655555544433344443333322222 234567777777777777766543
No 321
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=42.89 E-value=4.9e+02 Score=28.52 Aligned_cols=46 Identities=24% Similarity=0.284 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhh
Q 025912 71 THVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAEL 118 (246)
Q Consensus 71 tHvaLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAel 118 (246)
.+-+||.|+-..+.||.- ....+.=+|+|-+|+.|+.-+-||=.+.
T Consensus 424 ERDalr~e~kslk~ela~--~l~~DeLaEkdE~I~~lm~EGEkLSK~q 469 (961)
T KOG4673|consen 424 ERDALRREQKSLKKELAA--ALLKDELAEKDEIINQLMAEGEKLSKKQ 469 (961)
T ss_pred hHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 466788888888887753 3333577889999999988766665443
No 322
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=42.54 E-value=2.1e+02 Score=27.79 Aligned_cols=29 Identities=17% Similarity=0.335 Sum_probs=14.4
Q ss_pred cchhHHHHHHHHhHHHHHHHHHHHHHHHh
Q 025912 195 ASNHEQREIMEKNIISVAQQIERLQAELA 223 (246)
Q Consensus 195 ~e~~Eq~qaMEkNlisMarEvEKLRaEla 223 (246)
.+..++.+.+.+.+..+..++.+|..++.
T Consensus 371 ~~~~~~~~~l~~~~~~l~~~~~~l~~~~~ 399 (451)
T PF03961_consen 371 PEKKEQLKKLKEKKKELKEELKELKEELK 399 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555444
No 323
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=42.50 E-value=2.8e+02 Score=25.55 Aligned_cols=44 Identities=16% Similarity=0.266 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 025912 122 ESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKD 165 (246)
Q Consensus 122 e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qq 165 (246)
+-++.|+..--.+..++....-.|..|.+++.+|-.|+-.|.+.
T Consensus 161 ~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~ 204 (216)
T KOG1962|consen 161 EKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSK 204 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 44555555555666666677777778888888887777776654
No 324
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=42.28 E-value=16 Score=28.74 Aligned_cols=42 Identities=17% Similarity=0.247 Sum_probs=15.6
Q ss_pred HHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 47 LEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRH 88 (246)
Q Consensus 47 LEe~La~Q~~EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~ 88 (246)
..+=|..-..++..|..+|..|-...-.|..+|...+.....
T Consensus 23 VD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~ 64 (131)
T PF05103_consen 23 VDDFLDELAEELERLQRENAELKEEIEELQAQLEELREEEES 64 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence 344444444555555555555444444444444444333333
No 325
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=42.21 E-value=1.4e+02 Score=22.11 Aligned_cols=25 Identities=20% Similarity=0.372 Sum_probs=11.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHhhh
Q 025912 160 RDESKDMAAIKAEIETERQEIHKGR 184 (246)
Q Consensus 160 ~~d~qqip~l~aEid~lrqElqr~R 184 (246)
..|-.+|-++..||..++.++...|
T Consensus 83 ~~D~~~i~a~~~~~~~~~~~l~~~~ 107 (125)
T PF13801_consen 83 PPDEAAIEALLEEIREAQAELRQER 107 (125)
T ss_dssp SS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555544444443
No 326
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=42.17 E-value=1.3e+02 Score=24.51 Aligned_cols=51 Identities=16% Similarity=0.159 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhh
Q 025912 137 KLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECE 190 (246)
Q Consensus 137 ~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyE 190 (246)
.|-..=.+|..++..+..++..++. ++-.|..|-..|+-|-+++|.-+.-.
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~---~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKK---QLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445566666666666555543 35566777788888888888877654
No 327
>PRK12704 phosphodiesterase; Provisional
Probab=41.76 E-value=3.9e+02 Score=27.10 Aligned_cols=45 Identities=18% Similarity=0.353 Sum_probs=22.5
Q ss_pred hHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 114 LDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAK 158 (246)
Q Consensus 114 mEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r 158 (246)
|+..-...+..+++|.....+++++...+..--.++.+||+|=+|
T Consensus 112 L~~re~~Le~re~eLe~~~~~~~~~~~~~~~~l~~~a~lt~~ea~ 156 (520)
T PRK12704 112 LEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEAK 156 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 333333444455555555555555555555555555555555433
No 328
>PF10153 DUF2361: Uncharacterised conserved protein (DUF2361); InterPro: IPR019310 This entry represents the rRNA-processing protein EFG1 family. EFG1 is involved in rRNA processing.
Probab=41.49 E-value=2e+02 Score=23.76 Aligned_cols=38 Identities=26% Similarity=0.345 Sum_probs=30.4
Q ss_pred HHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 51 IAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRH 88 (246)
Q Consensus 51 La~Q~~EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~ 88 (246)
|-.|-++|+|||.-+.-=++-.+.+-++|.+-+.++..
T Consensus 2 lK~riRdieRLL~r~~Lp~~vR~~~Er~L~~L~~~l~~ 39 (114)
T PF10153_consen 2 LKKRIRDIERLLKRKDLPADVRVEKERELEALKRELEE 39 (114)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999977744477888999999998888876
No 329
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=41.46 E-value=3.5e+02 Score=26.48 Aligned_cols=102 Identities=25% Similarity=0.277 Sum_probs=61.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHH
Q 025912 57 DIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIE 136 (246)
Q Consensus 57 EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q 136 (246)
|+...-.+-..|++---.|...+.+.+.|++-+.+-.-+.+.|..-+-.+|+. + ++..|.|-+++|.|++
T Consensus 38 dLEkfe~Ekd~~a~~aETLeln~ealere~eLlaa~gc~a~~e~gterqdLaa-------~---i~etkeeNlkLrTd~e 107 (389)
T KOG4687|consen 38 DLEKFENEKDGLAARAETLELNLEALERELELLAACGCDAKIEFGTERQDLAA-------D---IEETKEENLKLRTDRE 107 (389)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHhcCCCchhhccchhhHHHH-------H---HHHHHHHhHhhhHHHH
Confidence 33344444455566666666666666666666665555555444333233322 2 3556777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHH
Q 025912 137 KLCVIKQEMIKDLNEINGDLAKARDESKDMAA 168 (246)
Q Consensus 137 ~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~ 168 (246)
.|--..-+|-+....+.+-.+...++.+-.|.
T Consensus 108 aL~dq~adLhgD~elfReTeAq~ese~~a~as 139 (389)
T KOG4687|consen 108 ALLDQKADLHGDCELFRETEAQFESEKMAGAS 139 (389)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHHhcccc
Confidence 77777777777777777777777777666554
No 330
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=41.45 E-value=2.6e+02 Score=27.23 Aligned_cols=18 Identities=33% Similarity=0.449 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 025912 75 LKQELSLAEQELRHLSSV 92 (246)
Q Consensus 75 LrQeL~aaq~El~~l~~~ 92 (246)
|+.++...+.++..+...
T Consensus 339 l~~~~~~~~~~l~~l~~~ 356 (451)
T PF03961_consen 339 LEEELEELKEELEKLKKN 356 (451)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444443
No 331
>PRK14127 cell division protein GpsB; Provisional
Probab=41.13 E-value=1.2e+02 Score=24.86 Aligned_cols=57 Identities=11% Similarity=0.209 Sum_probs=30.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH---------HHHHHHHHHHhhhhHHhh
Q 025912 55 HSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAER---------DAEVRELYEKSLKLDAEL 118 (246)
Q Consensus 55 ~~EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~---------e~qiReL~ek~~KmEAel 118 (246)
..+++.|..+|.+|-..-..|+..|...+..+ ...+... -.---+++.|+..||-.+
T Consensus 36 ~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~-------~~~~~~~~~~~~~~~~~~tn~DiLKRls~LEk~V 101 (109)
T PRK14127 36 IKDYEAFQKEIEELQQENARLKAQVDELTKQV-------SVGASSSSVATTQPSSSATNYDILKRLSNLEKHV 101 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------ccccccccccccCCCCCcchHHHHHHHHHHHHHH
Confidence 34666666666655555555555444444433 3322221 123456777888888764
No 332
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=40.96 E-value=4.1e+02 Score=27.13 Aligned_cols=81 Identities=17% Similarity=0.277 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccchhHHHHHHHHhHHHHHH
Q 025912 134 DIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQ 213 (246)
Q Consensus 134 e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEkNlisMar 213 (246)
.+.+|....+++..++..+.+.|..+-++ ..+..+..+++.+..++..+.+.++.- .++....++.+....+
T Consensus 392 ~~~~~~~~~~~~e~el~~l~~~l~~~~~~-e~i~~l~e~l~~l~~~l~~~~~~~~~~-------~~~~~~~~~~i~~~~~ 463 (650)
T TIGR03185 392 AKSQLLKELRELEEELAEVDKKISTIPSE-EQIAQLLEELGEAQNELFRSEAEIEEL-------LRQLETLKEAIEALRK 463 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 34444444444444555555444443322 245555556666666655555554432 2333344444444444
Q ss_pred HHHHHHHHH
Q 025912 214 QIERLQAEL 222 (246)
Q Consensus 214 EvEKLRaEl 222 (246)
++.+++...
T Consensus 464 ~~~~~~~~~ 472 (650)
T TIGR03185 464 TLDEKTKQK 472 (650)
T ss_pred HHHHHHHHH
Confidence 444444433
No 333
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=40.92 E-value=60 Score=26.03 Aligned_cols=34 Identities=9% Similarity=0.261 Sum_probs=19.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEING 154 (246)
Q Consensus 121 ~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltq 154 (246)
...+++++.+++.+.++|....+.|..+|..|..
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4445556666666666665555555555555443
No 334
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=40.87 E-value=2.6e+02 Score=24.89 Aligned_cols=30 Identities=20% Similarity=0.294 Sum_probs=17.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 59 QSLLQDNQRLAATHVALKQELSLAEQELRH 88 (246)
Q Consensus 59 qrLl~dNqRLAatHvaLrQeL~aaq~El~~ 88 (246)
..|....-.+|..|..|.+-|...-.+|..
T Consensus 63 ~~i~~~~e~~a~~H~~l~~~L~~~~~~l~~ 92 (261)
T cd07648 63 LVLRVSTEKLSELHLQLVQKLQELIKDVQK 92 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666777777776666533334443
No 335
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=40.63 E-value=2.2e+02 Score=23.91 Aligned_cols=73 Identities=19% Similarity=0.252 Sum_probs=43.3
Q ss_pred HHHhhhhHHhhhchhhHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 025912 108 YEKSLKLDAELRVIESMHAELDRVRADI------------EKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIET 175 (246)
Q Consensus 108 ~ek~~KmEAelRa~e~lk~El~Q~r~e~------------q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~ 175 (246)
+-...++|++|+-++-+..|+..+-.|. .+...+..+|..++..+...+..+. .|.-.+..+++.
T Consensus 26 ~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~Le~ri~tLe---kQe~~l~e~l~e 102 (119)
T COG1382 26 ILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKETLELRIKTLE---KQEEKLQERLEE 102 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 3344556666666666666666655542 1334556666666666666555443 455667777777
Q ss_pred HHHHHHhh
Q 025912 176 ERQEIHKG 183 (246)
Q Consensus 176 lrqElqr~ 183 (246)
|+.+|+.+
T Consensus 103 Lq~~i~~~ 110 (119)
T COG1382 103 LQSEIQKA 110 (119)
T ss_pred HHHHHHHH
Confidence 77777654
No 336
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=40.57 E-value=1.6e+02 Score=26.22 Aligned_cols=60 Identities=22% Similarity=0.302 Sum_probs=48.4
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhhhhcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhHhhhH
Q 025912 165 DMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANAEKRA 229 (246)
Q Consensus 165 qip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEkNlisMarEvEKLRaElanaEkRa 229 (246)
+.-.+.+.|.+++.+..|++.-++ | ++.++.+-..|.-|-..-.|||.+.+.+..-++|.
T Consensus 133 ~y~D~~arl~~l~~~~~rl~~ll~--k---a~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v 192 (262)
T PF14257_consen 133 QYVDLEARLKNLEAEEERLLELLE--K---AKTVEDLLEIERELSRVRSEIEQLEGQLKYLDDRV 192 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--h---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455677788888888889888887 2 22778888889999999999999999998888774
No 337
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=40.56 E-value=2.2e+02 Score=23.89 Aligned_cols=64 Identities=19% Similarity=0.320 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHH
Q 025912 73 VALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIE 136 (246)
Q Consensus 73 vaLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q 136 (246)
.+|-+++...+.++++.-.-.+.-++--=..+-||+++..-+|..+..+..==.|+.-+-.|+.
T Consensus 11 ~~l~~~v~~lRed~r~SEdrsa~SRa~mhrRlDElV~Rv~~lEs~~~~lk~dVsemKpVT~dV~ 74 (112)
T PF07439_consen 11 GTLNAEVKELREDIRRSEDRSAASRASMHRRLDELVERVTTLESSVSTLKADVSEMKPVTDDVK 74 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHhhHHhccchHHHHH
Confidence 3455666666666666555555555555567778888888888776555444444444555554
No 338
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=40.31 E-value=69 Score=25.29 Aligned_cols=28 Identities=18% Similarity=0.374 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 025912 135 IEKLCVIKQEMIKDLNEINGDLAKARDE 162 (246)
Q Consensus 135 ~q~L~a~RQELs~qvq~ltqeL~r~~~d 162 (246)
+.+|.+.=|+|.++|..|..|..-..+|
T Consensus 27 ~dqlss~vq~LnAkv~qLe~dv~a~~~~ 54 (78)
T COG4238 27 IDQLSSDVQTLNAKVDQLENDVNAMRSD 54 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555554443333
No 339
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=40.14 E-value=5.4e+02 Score=28.24 Aligned_cols=95 Identities=22% Similarity=0.319 Sum_probs=54.3
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---
Q 025912 89 LSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKD--- 165 (246)
Q Consensus 89 l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qq--- 165 (246)
++.-...-=+.+|..+|-+-+|.+-+--- .+-.-.+|.|.+. +.+|-.+--+|.. =..++.++.-+.-.
T Consensus 92 ~ndklE~~Lankda~lrq~eekn~slqer---LelaE~~l~qs~r-ae~lpeveael~q----r~~al~~aee~~~~~ee 163 (916)
T KOG0249|consen 92 LNDKLENELANKDADLRQNEEKNRSLQER---LELAEPKLQQSLR-AETLPEVEAELAQ----RNAALTKAEEHSGNIEE 163 (916)
T ss_pred chHHHHHHHhCcchhhchhHHhhhhhhHH---HHHhhHhhHhHHh-hhhhhhhHHHHHH----HHHHHHHHHHhhccHHH
Confidence 33333333445666666666666655433 3444456666666 5565544444444 34444444444433
Q ss_pred -hHHHHHHHHHHHHHHHhhhhhhhhhc
Q 025912 166 -MAAIKAEIETERQEIHKGRAAIECEK 191 (246)
Q Consensus 166 -ip~l~aEid~lrqElqr~Raa~EyEK 191 (246)
+--|..+++.+-+||+|+|.-.+.+-
T Consensus 164 r~~kl~~~~qe~naeL~rarqreemne 190 (916)
T KOG0249|consen 164 RTRKLEEQLEELNAELQRARQREKMNE 190 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34577888888888888887766554
No 340
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=40.13 E-value=2.9e+02 Score=25.08 Aligned_cols=97 Identities=18% Similarity=0.264 Sum_probs=60.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hHHHHHHHHHHH-------HHHHhhhhhhhhhcccc
Q 025912 123 SMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKD-MAAIKAEIETER-------QEIHKGRAAIECEKKNR 194 (246)
Q Consensus 123 ~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qq-ip~l~aEid~lr-------qElqr~Raa~EyEKK~~ 194 (246)
.++.=+..++.|+..++.....|+.++....+.+......-++ -..+...++.++ +.+..+|..|+..-+.
T Consensus 58 Tl~~sw~~~~~E~e~~a~~H~~la~~L~~~~~~~~~f~~~qk~~rKk~e~~~ek~~K~~~~~~k~~~ksKk~Ye~~Cke- 136 (240)
T cd07672 58 TLKRSLDVFKQQIDNVGQSHIQLAQTLRDEAKKMEDFRERQKLARKKIELIMDAIHKQRAMQFKKTMESKKNYEQKCRD- 136 (240)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 7888888899999999999999999888776656665333222 233444555553 4566667776655544
Q ss_pred cchhHHHHHHH--HhHHHHHHHHHHHHHHHh
Q 025912 195 ASNHEQREIME--KNIISVAQQIERLQAELA 223 (246)
Q Consensus 195 ~e~~Eq~qaME--kNlisMarEvEKLRaEla 223 (246)
.+...|. +. .|+ .+.+|++|+++-|.
T Consensus 137 ~~~a~~~--~~~~~~~-~~~ke~~K~~~Kl~ 164 (240)
T cd07672 137 KDEAEQA--VNRNANL-VNVKQQEKLFAKLA 164 (240)
T ss_pred HHHHHHH--HhhccCC-CCHHHHHHHHHHHH
Confidence 3332221 11 122 23677777777664
No 341
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=39.94 E-value=4.5e+02 Score=27.25 Aligned_cols=90 Identities=17% Similarity=0.300 Sum_probs=57.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccchhHHH
Q 025912 122 ESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQR 201 (246)
Q Consensus 122 e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~ 201 (246)
+.|-.+++.+.+-+-.+...++.|..++....++......+ +-.+...|..|+.||.--|..|| +|+
T Consensus 423 ~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~ee---L~~a~~~i~~LqDEL~TTr~NYE----------~QL 489 (518)
T PF10212_consen 423 EELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEE---LKEANQNISRLQDELETTRRNYE----------EQL 489 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhHH----------HHH
Confidence 44556666666666666677777777666665554433322 33344455555666665555544 588
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhh
Q 025912 202 EIMEKNIISVAQQIERLQAELAN 224 (246)
Q Consensus 202 qaMEkNlisMarEvEKLRaElan 224 (246)
..|=--|++|---+.|-+.||.+
T Consensus 490 s~MSEHLasmNeqL~~Q~eeI~~ 512 (518)
T PF10212_consen 490 SMMSEHLASMNEQLAKQREEIQT 512 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888754
No 342
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=39.91 E-value=1.2e+02 Score=28.04 Aligned_cols=52 Identities=19% Similarity=0.321 Sum_probs=0.0
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhh
Q 025912 119 RVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAI 187 (246)
Q Consensus 119 Ra~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~ 187 (246)
|..+++|.-..+.+..- .|+.-+|..|.+| --+|+.+++.|++|+..+|..|
T Consensus 201 rNN~A~~kSR~~~k~~~-------~e~~~r~~~leke----------n~~lr~~v~~l~~el~~~~~~~ 252 (269)
T KOG3119|consen 201 RNNEAVRKSRDKRKQKE-------DEMAHRVAELEKE----------NEALRTQVEQLKKELATLRRLF 252 (269)
T ss_pred hhhHHHHHhhhhHHHHH-------HHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH
No 343
>PF07028 DUF1319: Protein of unknown function (DUF1319); InterPro: IPR010746 This entry is represented by Commelina yellow mottle virus, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains a number of viral proteins of unknown function approximately 200 residues long. Family members seem to be restricted to badnaviruses.
Probab=39.82 E-value=1.1e+02 Score=25.98 Aligned_cols=79 Identities=11% Similarity=0.214 Sum_probs=44.7
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHhhhhhh----hHHHHHHHHHHHHHHHhhhhhhhhhccccc--------chhHHHHHH
Q 025912 139 CVIKQEMIKDL--NEINGDLAKARDESKD----MAAIKAEIETERQEIHKGRAAIECEKKNRA--------SNHEQREIM 204 (246)
Q Consensus 139 ~a~RQELs~qv--q~ltqeL~r~~~d~qq----ip~l~aEid~lrqElqr~Raa~EyEKK~~~--------e~~Eq~qaM 204 (246)
...|-+|..+| +....++.....=... +-.++.+++.|..|++.+|..|=-=+-.+. ...||=+-+
T Consensus 29 ~~~R~dL~~KV~~~~~~~~lk~~~ki~~~Qr~~l~~l~~~l~~l~~eL~~Lr~~~l~rRPLtk~dVeeLV~~IseQPK~I 108 (126)
T PF07028_consen 29 TCYRSDLGSKVSQKKLLEELKNLSKIQESQRSELKELKQELDVLSKELQALRKEYLERRPLTKEDVEELVLRISEQPKFI 108 (126)
T ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcHHH
Confidence 34577777777 3333344433332222 566677777777777777776644333333 334566777
Q ss_pred HHhHHHHHHHHHH
Q 025912 205 EKNIISVAQQIER 217 (246)
Q Consensus 205 EkNlisMarEvEK 217 (246)
||--..+..|+-|
T Consensus 109 EkQte~LteEL~k 121 (126)
T PF07028_consen 109 EKQTEALTEELTK 121 (126)
T ss_pred HHHHHHHHHHHHH
Confidence 7766666655544
No 344
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=39.80 E-value=4.9e+02 Score=27.70 Aligned_cols=17 Identities=18% Similarity=0.284 Sum_probs=9.4
Q ss_pred hHHHHHHHHHHHHHHHh
Q 025912 166 MAAIKAEIETERQEIHK 182 (246)
Q Consensus 166 ip~l~aEid~lrqElqr 182 (246)
+-..+.|++.+-.|+..
T Consensus 579 l~~a~~~~~~~i~~lk~ 595 (782)
T PRK00409 579 IKEAKKEADEIIKELRQ 595 (782)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455566666555553
No 345
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=39.78 E-value=90 Score=31.74 Aligned_cols=32 Identities=13% Similarity=0.375 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 124 MHAELDRVRADIEKLCVIKQEMIKDLNEINGD 155 (246)
Q Consensus 124 lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqe 155 (246)
+.++|..++.|.+.+...++++..+++.+..|
T Consensus 81 LEKqLaaLrqElq~~saq~~dle~KIkeLEaE 112 (475)
T PRK13729 81 MQKQYEEIRRELDVLNKQRGDDQRRIEKLGQD 112 (475)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 44455555566666666666665555543333
No 346
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=39.67 E-value=84 Score=22.44 Aligned_cols=29 Identities=17% Similarity=0.450 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 124 MHAELDRVRADIEKLCVIKQEMIKDLNEI 152 (246)
Q Consensus 124 lk~El~Q~r~e~q~L~a~RQELs~qvq~l 152 (246)
++.++.++..++.+|.....+|..+++.+
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444443333333
No 347
>KOG3809 consensus Microtubule-binding protein MIP-T3 [Cytoskeleton]
Probab=39.59 E-value=3.9e+02 Score=27.70 Aligned_cols=176 Identities=18% Similarity=0.213 Sum_probs=105.1
Q ss_pred HhhHHHHHHHHHhhHHHHHHHHHHHHH------------HHHHHHHHHHHHHhhhhhhhhHHH--HHHHHHHHhhhhHHh
Q 025912 52 AIQHSDIQSLLQDNQRLAATHVALKQE------------LSLAEQELRHLSSVAASVKAERDA--EVRELYEKSLKLDAE 117 (246)
Q Consensus 52 a~Q~~EiqrLl~dNqRLAatHvaLrQe------------L~aaq~El~~l~~~i~~i~aE~e~--qiReL~ek~~KmEAe 117 (246)
+....-|.-+..+|+-...+---..-| +.-+..+++-+...+.+.-+|.|. ---.|++||+.--+|
T Consensus 376 a~r~~~ie~v~~~~~~~~~~~snVi~e~~~~~~edd~nfV~e~d~~~~d~~e~~~d~~~ee~~ldaqG~LVqkIlETkke 455 (583)
T KOG3809|consen 376 ALRKKQIETVDSTPQVVVELKSNVISEAPKVETEDDSNFVMENDEEDGDRTERIEDLVDEEDRLDAQGALVQKILETKKE 455 (583)
T ss_pred chhhhhhhhhhCCchhhhhhhhhhcccCCCCccccccceeeeccccccchhhhcccchhhhhhhhhhhhHHHHHHHHHHH
Confidence 445666778888888765432222111 111223344444555544444332 123577777655555
Q ss_pred hhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-HHHHHHHHHHHHHHHhhhhhh-------hh
Q 025912 118 LRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDM-AAIKAEIETERQEIHKGRAAI-------EC 189 (246)
Q Consensus 118 lRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqi-p~l~aEid~lrqElqr~Raa~-------Ey 189 (246)
+- ..-.+.+---+|+.+..+++.+-+.+|+..-|+|.|...=+.+| .-+-.++|.|+.||+.-|+.+ -.
T Consensus 456 ~e---~~g~~~~p~e~~a~~~~sa~~~~~~~lr~~~Q~LtkSa~PLgkl~D~i~eD~daMq~EL~mWrse~rq~~~elq~ 532 (583)
T KOG3809|consen 456 IE---DGGGQDQPEESDADKIMSAEREKMKQLREKLQDLTKSAYPLGKLFDFINEDIDAMQKELEMWRSEQRQNEQELQN 532 (583)
T ss_pred HH---hcCCCCCCChhhhhhHHHHHHHHHHHHHHHHHHHHHhhccHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHHHHh
Confidence 32 22222222346677888888887778888888887776655553 345567888888888877643 33
Q ss_pred hccccc----chhHHHHHHHHhHHHHHHHHHHHHHHHhhHhhhHh
Q 025912 190 EKKNRA----SNHEQREIMEKNIISVAQQIERLQAELANAEKRAR 230 (246)
Q Consensus 190 EKK~~~----e~~Eq~qaMEkNlisMarEvEKLRaElanaEkRa~ 230 (246)
|+-.-+ -++.+++.+++-+-.---+|.+-|+-|.|-++|-.
T Consensus 533 eq~~t~~a~epL~~~la~lq~~I~d~~e~i~~~r~~IL~Ne~rIq 577 (583)
T KOG3809|consen 533 EQAATFGASEPLYNILANLQKEINDTKEEISKARGRILNNEKRIQ 577 (583)
T ss_pred hhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 443333 24556677777777777788888998888888743
No 348
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=39.28 E-value=2.9e+02 Score=24.94 Aligned_cols=32 Identities=16% Similarity=0.261 Sum_probs=23.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 58 IQSLLQDNQRLAATHVALKQELSLAEQELRHL 89 (246)
Q Consensus 58 iqrLl~dNqRLAatHvaLrQeL~aaq~El~~l 89 (246)
...+....-++|..|..|.+-|...-.+|...
T Consensus 62 w~~~~~~~E~~a~~H~~l~~~L~~~~~~i~~~ 93 (261)
T cd07674 62 WEVFRVSSDKLALCHLELMRKLNDLIKDINRY 93 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667778888999999999887444555544
No 349
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=39.02 E-value=3.2e+02 Score=28.90 Aligned_cols=17 Identities=18% Similarity=0.405 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHhhhhh
Q 025912 170 KAEIETERQEIHKGRAA 186 (246)
Q Consensus 170 ~aEid~lrqElqr~Raa 186 (246)
-.+||.+++-++.++.+
T Consensus 107 L~~ld~vK~rm~~a~~~ 123 (766)
T PF10191_consen 107 LAELDSVKSRMEAARET 123 (766)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 350
>TIGR00255 conserved hypothetical protein TIGR00255. The apparent ortholog from Aquifex aeolicus as reported is split into two consecutive reading frames.
Probab=38.88 E-value=3.4e+02 Score=25.57 Aligned_cols=21 Identities=19% Similarity=0.381 Sum_probs=17.4
Q ss_pred HhHHHHHHHHHHHHHHHhhHh
Q 025912 206 KNIISVAQQIERLQAELANAE 226 (246)
Q Consensus 206 kNlisMarEvEKLRaElanaE 226 (246)
.-.|.|-.||||+|..+.|-|
T Consensus 271 ~~vVe~K~eiEkiREQVQNIE 291 (291)
T TIGR00255 271 NLAVEMKVLIEKIKEQIQNIE 291 (291)
T ss_pred HHHHHHHHHHHHHHHHHhcCC
Confidence 345779999999999999864
No 351
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=38.86 E-value=2.4e+02 Score=24.41 Aligned_cols=35 Identities=26% Similarity=0.374 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH
Q 025912 133 ADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMA 167 (246)
Q Consensus 133 ~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip 167 (246)
..|+.|...-..|-.++..+-+.|..++.++..+|
T Consensus 29 ~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~~ 63 (188)
T PF10018_consen 29 ARIQQLRAEIEELDEQIRDILKQLKEARKELRTLP 63 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344444444444444333333
No 352
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=38.43 E-value=5.3e+02 Score=27.67 Aligned_cols=26 Identities=15% Similarity=0.196 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 64 DNQRLAATHVALKQELSLAEQELRHL 89 (246)
Q Consensus 64 dNqRLAatHvaLrQeL~aaq~El~~l 89 (246)
++--|..+=..++..|..++.+|...
T Consensus 280 EK~~L~~~L~e~Q~qLe~a~~als~q 305 (717)
T PF09730_consen 280 EKSSLLSNLQESQKQLEHAQGALSEQ 305 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456666666777777777666644
No 353
>KOG1981 consensus SOK1 kinase belonging to the STE20/SPS1/GC kinase family [Signal transduction mechanisms]
Probab=38.36 E-value=4.3e+02 Score=27.39 Aligned_cols=131 Identities=21% Similarity=0.205 Sum_probs=70.5
Q ss_pred HHHHHHH-HhhHHHHHHHH------HHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchhhHHHHH
Q 025912 56 SDIQSLL-QDNQRLAATHV------ALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAEL 128 (246)
Q Consensus 56 ~EiqrLl-~dNqRLAatHv------aLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~lk~El 128 (246)
.++-.++ -+++|+-+... .|||+|....=++.-+.-.+-++= .|--.|+|+|-
T Consensus 140 d~L~~~llp~~~r~r~eInevLD~dll~Qele~G~Ldi~~L~~fvl~ll--------------------~~lCAPaRDe~ 199 (513)
T KOG1981|consen 140 DTLLDLLLPVHTRLRAEINEVLDTDLLRQELESGTLDISYLSEFVLDLL--------------------SRLCAPARDEE 199 (513)
T ss_pred HHHHHHhCCccHHHHHHHHHHHhHHHHHHHHHcCCchHHHHHHHHHHHH--------------------HHhcCCcccHH
Confidence 3444444 66666655443 567776666666665544333221 12235666665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccchhHHHHHHHHhH
Q 025912 129 DRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNI 208 (246)
Q Consensus 129 ~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEkNl 208 (246)
.+--..+..++-.=...-..++.|..|++.. + |--+|=.|+ =..+|||||.+-+.+.|.-. +|
T Consensus 200 V~~l~~itdvV~~~R~Ilq~l~lMK~DiaN~-----~-------I~~lrp~L~--~~sveyEkk~Fqk~l~~~~~---~l 262 (513)
T KOG1981|consen 200 VAKLRSITDVVDGFRGILQLLELMKLDIANY-----Q-------IRILRPALQ--ENSVEYEKKKFQKLLGQAPV---SL 262 (513)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-----H-------HHHhhHHHH--HhhHHHHHHHHHHHHhhCCC---CC
Confidence 4433333333333333333444444444322 2 233445555 57899999999999984322 34
Q ss_pred HHHHHHHHHHHHHHh
Q 025912 209 ISVAQQIERLQAELA 223 (246)
Q Consensus 209 isMarEvEKLRaEla 223 (246)
-.--+=+.+.|.|+.
T Consensus 263 ~~t~~WL~~~~~e~~ 277 (513)
T KOG1981|consen 263 PFTRQWLDKARSELE 277 (513)
T ss_pred cHHHHHHHHHhcccc
Confidence 555666788888875
No 354
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=38.31 E-value=99 Score=29.68 Aligned_cols=47 Identities=26% Similarity=0.346 Sum_probs=40.4
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Q 025912 54 QHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAER 100 (246)
Q Consensus 54 Q~~EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~ 100 (246)
+.+|.+.|+++=+-|-.....||..+.....||+.|+..|..+..++
T Consensus 246 kRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~~~r 292 (294)
T KOG4571|consen 246 KRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVYKKR 292 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 57888999999999999999999999999999999998887666543
No 355
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=38.20 E-value=3e+02 Score=28.32 Aligned_cols=122 Identities=22% Similarity=0.252 Sum_probs=77.0
Q ss_pred HHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchhhHHHHHH
Q 025912 50 RIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELD 129 (246)
Q Consensus 50 ~La~Q~~EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~lk~El~ 129 (246)
=|..-..|-..++-+| ..|||.|.-++|||.+- ||+. +|-.|.+.-|.+|+.
T Consensus 72 lL~~lQdEWDavML~~-------F~LRqqL~ttrQELSha-----------------LYqh----DAAcrViaRL~kE~~ 123 (506)
T KOG0289|consen 72 LLKTLQDEWDAVMLES-------FTLRQQLQTTRQELSHA-----------------LYQH----DAACRVIARLTKERD 123 (506)
T ss_pred HHHHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHH-----------------HHhh----hHHHHHHHHHHHHHH
Confidence 3555566777777666 68999999999999874 3332 566677777777776
Q ss_pred HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhhhhh--hhHHHHHHHHHHHHHHHhhhhhh---hhhcccccc
Q 025912 130 RVRADIEKLCVIKQEMIKD--------LNEINGDLAKARDESK--DMAAIKAEIETERQEIHKGRAAI---ECEKKNRAS 196 (246)
Q Consensus 130 Q~r~e~q~L~a~RQELs~q--------vq~ltqeL~r~~~d~q--qip~l~aEid~lrqElqr~Raa~---EyEKK~~~e 196 (246)
-+|-..-+| .+.-.+- .|.=....+.-.++.| --|.++..++.--|+|-+-|..+ ..||-.+.+
T Consensus 124 eareaLa~~---~~qa~a~~peav~~~~~~s~~~va~ge~~d~~g~s~~i~~~l~~~aq~ls~~rKkrg~k~p~~la~~d 200 (506)
T KOG0289|consen 124 EAREALAKL---SPQAGAIVPEAVPSLAQSSVVGVAAGESEDQPGLSPEIIQKLEDKAQVLSQERKKRGKKLPEKLATTD 200 (506)
T ss_pred HHHHHHhhc---CcccccccccccccccccchhhhhcCCccccccCCHHHHHHHHHHHHHHHHHhhhccccCCcccccHH
Confidence 666543333 2222222 2222334445556666 56888888888888888877776 446666666
Q ss_pred hhHHHH
Q 025912 197 NHEQRE 202 (246)
Q Consensus 197 ~~Eq~q 202 (246)
.+.++.
T Consensus 201 ~~~~~~ 206 (506)
T KOG0289|consen 201 ELSCLL 206 (506)
T ss_pred HHHHHH
Confidence 555543
No 356
>PF13166 AAA_13: AAA domain
Probab=37.92 E-value=4.4e+02 Score=26.61 Aligned_cols=97 Identities=21% Similarity=0.355 Sum_probs=53.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh--hHHHHHHHHHHHHHHHhhhhhhhhhcccccchhH
Q 025912 122 ESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKD--MAAIKAEIETERQEIHKGRAAIECEKKNRASNHE 199 (246)
Q Consensus 122 e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qq--ip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~E 199 (246)
+.+...+..+...++.+.+...+.-.++..+.+++..+...... +..+...++.+..++......+..-++
T Consensus 359 ~~~~~~~~~l~~~i~~~n~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~------- 431 (712)
T PF13166_consen 359 EEINEDIDELNSIIDELNELIEEHNEKIDNLKKEQNELKDKLWLHLIAKLKEDIEEYQKEIKELEKEINSLEK------- 431 (712)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 44555566667777777777777777777777777666655433 344555555555555544433322221
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHhhH
Q 025912 200 QREIMEKNIISVAQQIERLQAELANA 225 (246)
Q Consensus 200 q~qaMEkNlisMarEvEKLRaElana 225 (246)
.....+..+-+.-.++..|++.+.|.
T Consensus 432 ~~~~~~~~~~~~~~~i~~l~~~~~~~ 457 (712)
T PF13166_consen 432 KLKKAKEEIKKIEKEIKELEAQLKNT 457 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 22333444444555555555555443
No 357
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=37.82 E-value=2e+02 Score=22.62 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHH
Q 025912 76 KQELSLAEQELRHLSSVAASVKAERD 101 (246)
Q Consensus 76 rQeL~aaq~El~~l~~~i~~i~aE~e 101 (246)
+++|+.++.++......+..+....+
T Consensus 19 ~~~la~~~~~~~~~~~~l~~l~~~~~ 44 (141)
T TIGR02473 19 KLELAKAQAEFERLETQLQQLIKYRE 44 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666555555444444444443
No 358
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=37.59 E-value=2.1e+02 Score=22.74 Aligned_cols=40 Identities=20% Similarity=0.344 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q 025912 138 LCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETER 177 (246)
Q Consensus 138 L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lr 177 (246)
|....+.|..+++.+.+.+..........-.++..|+++.
T Consensus 4 l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~ 43 (129)
T cd00584 4 LAAQLQVLQQEIEELQQELARLNEAIAEYEQAKETLETLK 43 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444444444444444455555553
No 359
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=37.45 E-value=2.9e+02 Score=24.39 Aligned_cols=96 Identities=13% Similarity=0.191 Sum_probs=48.3
Q ss_pred HHhhhhHHhhhchhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhh
Q 025912 109 EKSLKLDAELRVIESMHAELDRVRADIE-KLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAI 187 (246)
Q Consensus 109 ek~~KmEAelRa~e~lk~El~Q~r~e~q-~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~ 187 (246)
+|-.+++.++...+..+.|..+...+.+ +|..+|.+-..-+.....+-.+...+... ..+.| ..+.+..++..+
T Consensus 79 ~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~~Ii~~A~~eAe~~~e~i~~--~A~~e---ae~ii~~A~~~I 153 (205)
T PRK06231 79 KRKELIEAEINQANELKQQAQQLLENAKQRHENALAQAKEIIDQANYEALQLKSELEK--EANRQ---ANLIIFQARQEI 153 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH---HHHHHHHHHHHH
Confidence 4444555666666666666665555543 23444444444343333333332222211 22333 335667788888
Q ss_pred hhhcccccchhHHHHHHHHhHHHHHHHH
Q 025912 188 ECEKKNRASNHEQREIMEKNIISVAQQI 215 (246)
Q Consensus 188 EyEKK~~~e~~Eq~qaMEkNlisMarEv 215 (246)
+.||+.-. +.+.+.++.+|-++
T Consensus 154 e~Ek~~a~------~~Lk~ei~~lAv~i 175 (205)
T PRK06231 154 EKERRELK------EQLQKESVELAMLA 175 (205)
T ss_pred HHHHHHHH------HHHHHHHHHHHHHH
Confidence 88876543 33445555555554
No 360
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.
Probab=37.36 E-value=2.7e+02 Score=25.82 Aligned_cols=79 Identities=13% Similarity=0.224 Sum_probs=58.8
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhhhhcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhHhhhHhHHHhhhhcCCCCC
Q 025912 165 DMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANAEKRARAAAAAAAVNPSIY 243 (246)
Q Consensus 165 qip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEkNlisMarEvEKLRaElanaEkRa~a~~aaaa~np~~~ 243 (246)
.+..+.+++..|+..+..++..++.-.+.....-.-...|..-+-....++..|...+..+++.-......=..+|..+
T Consensus 275 ~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~yfge~~~~~ 353 (370)
T PF02181_consen 275 SLDELEQDIKELEKGLEKIKKELEAIEKDEEDDDKFKEKMKEFLEEAETKLDELQELYEELEEAFKQLLQYFGEDPKKM 353 (370)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHCCTTSSTT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TTCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 4778889999999999999999888887555555567788888888889999999999888887766653333445443
No 361
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=37.35 E-value=2.7e+02 Score=27.07 Aligned_cols=20 Identities=25% Similarity=0.406 Sum_probs=8.6
Q ss_pred HhHHHHHHHHHHHHHHHhhH
Q 025912 206 KNIISVAQQIERLQAELANA 225 (246)
Q Consensus 206 kNlisMarEvEKLRaElana 225 (246)
.|+.....+...+.+.++.+
T Consensus 176 ~~~~~l~~~~~~~~~~v~~a 195 (352)
T COG1566 176 QNLALLESEVSGAQAQVASA 195 (352)
T ss_pred HHHHHHhhhhccchhHHHHH
Confidence 34444444444444444433
No 362
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=37.18 E-value=2e+02 Score=22.34 Aligned_cols=41 Identities=12% Similarity=0.281 Sum_probs=31.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025912 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARD 161 (246)
Q Consensus 121 ~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~ 161 (246)
.|.||.|...+-.|+..+...+.++-.++++-.+|++..+.
T Consensus 6 Ld~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~ 46 (79)
T PF08581_consen 6 LDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQ 46 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 47788888888888888888888888887776666655443
No 363
>PF08898 DUF1843: Domain of unknown function (DUF1843); InterPro: IPR014994 This domain is found in functionally uncharacterised proteins. It can be found independently or at the C terminus of the protein.
Probab=37.17 E-value=64 Score=23.77 Aligned_cols=37 Identities=27% Similarity=0.311 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhh
Q 025912 147 KDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKG 183 (246)
Q Consensus 147 ~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~ 183 (246)
+.+..|..=++.+..-..+-+.+.+.++.|+.||-++
T Consensus 14 GDLa~MK~l~~~aeq~L~~~~~i~~al~~Lk~EIakl 50 (53)
T PF08898_consen 14 GDLAQMKALAAQAEQQLAEAGDIAAALEKLKAEIAKL 50 (53)
T ss_pred CcHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHH
Confidence 3344444444444555555677777777777777654
No 364
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=36.90 E-value=2.6e+02 Score=23.62 Aligned_cols=21 Identities=19% Similarity=0.406 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHhhHhhh
Q 025912 208 IISVAQQIERLQAELANAEKR 228 (246)
Q Consensus 208 lisMarEvEKLRaElanaEkR 228 (246)
|+.-..+++.||.++.+-+.+
T Consensus 147 y~~~~~~~~~l~~~i~~l~rk 167 (177)
T PF13870_consen 147 YDKTKEEVEELRKEIKELERK 167 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555556666666666655544
No 365
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=36.82 E-value=2.5e+02 Score=29.05 Aligned_cols=45 Identities=20% Similarity=0.258 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhh
Q 025912 74 ALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAEL 118 (246)
Q Consensus 74 aLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAel 118 (246)
.++|.+...++||.++.........|.....+.+-+....+++.+
T Consensus 343 ~~~q~~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l 387 (656)
T PRK06975 343 ALNRKVDRLDQELVQRQQANDAQTAELRVKTEQAQASVHQLDSQF 387 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666555555554454444444444444444443
No 366
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=36.65 E-value=2.1e+02 Score=22.78 Aligned_cols=14 Identities=0% Similarity=0.435 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 025912 125 HAELDRVRADIEKL 138 (246)
Q Consensus 125 k~El~Q~r~e~q~L 138 (246)
|.++..+...+.+.
T Consensus 34 ~~~~~~l~~~~~~~ 47 (106)
T PF10805_consen 34 REDIEKLEERLDEH 47 (106)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444333
No 367
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.58 E-value=3.7e+02 Score=25.32 Aligned_cols=49 Identities=29% Similarity=0.311 Sum_probs=21.0
Q ss_pred hHHHHHHhhHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 025912 46 HLEDRIAIQHSDIQSLLQDN-QRLAATHVALKQELSLAEQELRHLSSVAA 94 (246)
Q Consensus 46 ~LEe~La~Q~~EiqrLl~dN-qRLAatHvaLrQeL~aaq~El~~l~~~i~ 94 (246)
+.+..+.-+..=|.+.+.+= .++-.+|+.-=+-|+..++|...|.+...
T Consensus 19 ~~~~~i~n~~s~~D~f~q~~r~~~~nS~~efar~lS~~~~e~e~l~~~l~ 68 (246)
T KOG4657|consen 19 ICEKDIHNQRSKIDSFIQSPRRRSMNSLVEFARALSQSQVELENLKADLR 68 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444332 22334444444444444444444443333
No 368
>PLN02320 seryl-tRNA synthetase
Probab=36.44 E-value=4e+02 Score=27.28 Aligned_cols=18 Identities=11% Similarity=0.385 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 025912 132 RADIEKLCVIKQEMIKDL 149 (246)
Q Consensus 132 r~e~q~L~a~RQELs~qv 149 (246)
..++..|.+.|..++.++
T Consensus 106 ~~~~~~lr~ern~~sk~i 123 (502)
T PLN02320 106 QKEVERLRAERNAVANKM 123 (502)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444444
No 369
>PRK14154 heat shock protein GrpE; Provisional
Probab=36.37 E-value=1.8e+02 Score=26.36 Aligned_cols=48 Identities=15% Similarity=0.216 Sum_probs=38.8
Q ss_pred CCchHhHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 41 SPSLHHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRH 88 (246)
Q Consensus 41 ~p~~~~LEe~La~Q~~EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~ 88 (246)
+|....|+++|+.-..++..|-....|+.|+---+|+-...-..++..
T Consensus 51 ~~~~~~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~ 98 (208)
T PRK14154 51 FPSREKLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIK 98 (208)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678889999999999999999888899998888888766555554443
No 370
>COG4920 Predicted membrane protein [Function unknown]
Probab=36.20 E-value=22 Score=32.95 Aligned_cols=34 Identities=24% Similarity=0.341 Sum_probs=26.2
Q ss_pred HHHHhhhhhhhhhccccc-------chhHHHHHHHHhHHHHH
Q 025912 178 QEIHKGRAAIECEKKNRA-------SNHEQREIMEKNIISVA 212 (246)
Q Consensus 178 qElqr~Raa~EyEKK~~~-------e~~Eq~qaMEkNlisMa 212 (246)
||+.++|.-+| ||+++- ..-||.++|-+|..+|-
T Consensus 64 ~eI~~aR~LyE-EK~a~eL~~kDee~l~E~~~~~~~~f~~m~ 104 (249)
T COG4920 64 QEISRARPLYE-EKEANELLEKDEELLNEYKRFARASFMPML 104 (249)
T ss_pred HHHhhcchhHh-hhhhHHHHHhhHHHHHHHHHHHHHhccHHH
Confidence 78999999999 887652 34577888888877664
No 371
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=36.18 E-value=7.3e+02 Score=28.62 Aligned_cols=126 Identities=17% Similarity=0.204 Sum_probs=96.5
Q ss_pred HHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchhhHHHHHHH
Q 025912 51 IAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDR 130 (246)
Q Consensus 51 La~Q~~EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~lk~El~Q 130 (246)
+...-.||+.=+-|+.-+-++-..|.-+.--...++.++...+..+--+.+...-+++.....+=.+ +...+.-
T Consensus 249 ~~~~i~ei~~~~~el~k~~~~~~~l~~e~~~l~~~~~~l~~~i~~~~~~t~~~l~~~~~n~~~~~~~------~~~~~~~ 322 (1294)
T KOG0962|consen 249 IEAKIEEIEKSLKELEKLLKQVKLLDSEHKNLKKQISRLREKILKIFDGTDEELGELLSNFEERLEE------MGEKLRE 322 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHHhHHHHHHH------HHHhHHH
Confidence 3455677888888999999999999999999999999999999988888888887777766554322 3334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHh
Q 025912 131 VRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHK 182 (246)
Q Consensus 131 ~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr 182 (246)
+..++..|...++.|...-..+.-+..+.+++.--.-.++-..+.+-+++.+
T Consensus 323 ~e~~~~~l~~e~~~l~~~k~~~~~~~~~lq~e~~~~~~l~~~~~~~~~~~~~ 374 (1294)
T KOG0962|consen 323 LEREISDLNEERSSLIQLKTELDLEQSELQAEAEFHQELKRQRDSLIQELAH 374 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666777777777777777777778888887778888888888888864
No 372
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=36.12 E-value=6.7e+02 Score=28.21 Aligned_cols=163 Identities=21% Similarity=0.317 Sum_probs=95.6
Q ss_pred CCchHhHHHHH-----HhhHHHHHHHHHhhHHHH---------HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH----
Q 025912 41 SPSLHHLEDRI-----AIQHSDIQSLLQDNQRLA---------ATHVALKQELSLAEQELRHLSSVAASVKAERDA---- 102 (246)
Q Consensus 41 ~p~~~~LEe~L-----a~Q~~EiqrLl~dNqRLA---------atHvaLrQeL~aaq~El~~l~~~i~~i~aE~e~---- 102 (246)
+|++.-||+=| |.+..=|..==.=||-|- .+..-||+||.||.. -.+-.-++.=.
T Consensus 368 SPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~llKd~~~EIerLK~dl~AaRe-------KnGvyisee~y~~~e 440 (1041)
T KOG0243|consen 368 SPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLMKKTLLKDLYEEIERLKRDLAAARE-------KNGVYISEERYTQEE 440 (1041)
T ss_pred CCCcccHHHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHh-------hCceEechHHHHHHH
Confidence 44555788855 444455554444566654 445556666655543 23333333222
Q ss_pred -HHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 025912 103 -EVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIH 181 (246)
Q Consensus 103 -qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElq 181 (246)
+.-+..+++-+||-+ ++.++..+.++........-.++.|..+...+...|..-. .|+..+..|++
T Consensus 441 ~e~~~~~~~ieele~e---l~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~----------~el~~~~ee~~ 507 (1041)
T KOG0243|consen 441 KEKKEMAEQIEELEEE---LENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKN----------KELESLKEELQ 507 (1041)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHH
Confidence 233444555555555 6778888888888887777777788777777776665433 45677777777
Q ss_pred hhhhhhhhhcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhHhhhHh
Q 025912 182 KGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANAEKRAR 230 (246)
Q Consensus 182 r~Raa~EyEKK~~~e~~Eq~qaMEkNlisMarEvEKLRaElanaEkRa~ 230 (246)
.+...+..+ .+.+-+ |+++-....+-..+||..+..+-+.-.
T Consensus 508 ~~~~~l~~~----e~ii~~---~~~se~~l~~~a~~l~~~~~~s~~d~s 549 (1041)
T KOG0243|consen 508 QAKATLKEE----EEIISQ---QEKSEEKLVDRATKLRRSLEESQDDLS 549 (1041)
T ss_pred HHHHHHHHH----HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777764322 223333 444444444447788888876655544
No 373
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=36.07 E-value=4.1e+02 Score=25.71 Aligned_cols=76 Identities=17% Similarity=0.351 Sum_probs=46.5
Q ss_pred HHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHhhhhhh
Q 025912 105 RELYEKSLKLDAELRVIESMHAELDRVRADIEKLC-------------------VIKQEMIKDLNEINGDLAKARDESKD 165 (246)
Q Consensus 105 ReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~-------------------a~RQELs~qvq~ltqeL~r~~~d~qq 165 (246)
.+.-++..+|..| ++.++..+.-+.+|++-|- ..|..|..++..++.....+.-|.+.
T Consensus 75 ~~sre~Nk~L~~E---v~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs 151 (319)
T PF09789_consen 75 SESREQNKKLKEE---VEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQS 151 (319)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444556666666 5566666666666665543 35677778888887777777777777
Q ss_pred hHH----HHHHHHHHHHHHHhh
Q 025912 166 MAA----IKAEIETERQEIHKG 183 (246)
Q Consensus 166 ip~----l~aEid~lrqElqr~ 183 (246)
+-. +..|.|..+.=.+|+
T Consensus 152 ~lDEkeEl~~ERD~yk~K~~RL 173 (319)
T PF09789_consen 152 LLDEKEELVTERDAYKCKAHRL 173 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 543 344444444333333
No 374
>PRK09343 prefoldin subunit beta; Provisional
Probab=35.84 E-value=2.4e+02 Score=22.95 Aligned_cols=77 Identities=16% Similarity=0.256 Sum_probs=40.4
Q ss_pred HHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 025912 104 VRELYEKSLKLDAELRVIESMHAELDRVRADIE------------KLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKA 171 (246)
Q Consensus 104 iReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q------------~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~a 171 (246)
+..+......+|++++-.+.+..||..+-.|.. ....++.+|..++..+..++.++ -++.-.++.
T Consensus 23 l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~ie~~ik~l---ekq~~~l~~ 99 (121)
T PRK09343 23 LERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELLELRSRTL---EKQEKKLRE 99 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 344555555666666666666666666554432 33445555555555555443333 233444555
Q ss_pred HHHHHHHHHHhh
Q 025912 172 EIETERQEIHKG 183 (246)
Q Consensus 172 Eid~lrqElqr~ 183 (246)
.+..++..|+.+
T Consensus 100 ~l~e~q~~l~~l 111 (121)
T PRK09343 100 KLKELQAKINEM 111 (121)
T ss_pred HHHHHHHHHHHH
Confidence 555555555443
No 375
>PRK11281 hypothetical protein; Provisional
Probab=35.70 E-value=6.8e+02 Score=28.15 Aligned_cols=126 Identities=14% Similarity=0.103 Sum_probs=0.0
Q ss_pred HhHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchhhH
Q 025912 45 HHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESM 124 (246)
Q Consensus 45 ~~LEe~La~Q~~EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~l 124 (246)
..++-++..+..|.+.--.=..-+-..+--++.++...+++++.|...+..-+.+ ++|-..-++.
T Consensus 202 ~~l~~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~kr~~---------------~se~~~~~a~ 266 (1113)
T PRK11281 202 ALLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINSKRLT---------------LSEKTVQEAQ 266 (1113)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHh
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhhh
Q 025912 125 HAELDRV---RADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIE 188 (246)
Q Consensus 125 k~El~Q~---r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~E 188 (246)
+.+..+. +--++++...=+.|+..+...|+.+... .|+--..+..+|.++|-....+-.++
T Consensus 267 ~~~~~~~~~~~p~i~~~~~~N~~Ls~~L~~~t~~~~~l---~~~~~~~~~~l~~~~q~~~~i~eqi~ 330 (1113)
T PRK11281 267 SQDEAARIQANPLVAQELEINLQLSQRLLKATEKLNTL---TQQNLRVKNWLDRLTQSERNIKEQIS 330 (1113)
T ss_pred hhhhhcccCCChHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
No 376
>PLN02678 seryl-tRNA synthetase
Probab=35.63 E-value=2.3e+02 Score=28.29 Aligned_cols=12 Identities=33% Similarity=0.559 Sum_probs=5.3
Q ss_pred HHHhhhhHHhhh
Q 025912 108 YEKSLKLDAELR 119 (246)
Q Consensus 108 ~ek~~KmEAelR 119 (246)
+|++.+++.+.|
T Consensus 32 id~il~ld~~~r 43 (448)
T PLN02678 32 VDEVIALDKEWR 43 (448)
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
No 377
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=35.62 E-value=2.3e+02 Score=24.19 Aligned_cols=14 Identities=21% Similarity=0.349 Sum_probs=8.7
Q ss_pred hhhhhhhHHHHHHH
Q 025912 93 AASVKAERDAEVRE 106 (246)
Q Consensus 93 i~~i~aE~e~qiRe 106 (246)
....++++.+++-+
T Consensus 95 ~~~fraQRN~YIsG 108 (192)
T PF05529_consen 95 AKKFRAQRNMYISG 108 (192)
T ss_pred HHHHHHHHhHHHHH
Confidence 45556677666654
No 378
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.61 E-value=5.8e+02 Score=27.29 Aligned_cols=121 Identities=17% Similarity=0.221 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Q 025912 76 KQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLC-----VIKQEMIKDLN 150 (246)
Q Consensus 76 rQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~-----a~RQELs~qvq 150 (246)
-.+|..+.+|...-..+.=.+=-|++ .|-.+...||++ .|..|.|+.|..--.-+.. +.|..++.+=-
T Consensus 21 T~el~q~t~e~~qaAeyGL~lLeeK~----~Lkqq~eEleae---yd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~Ees 93 (772)
T KOG0999|consen 21 TEELEQTTEEKIQAAEYGLELLEEKE----DLKQQLEELEAE---YDLARTELDQTKEALGQYRSQHKKVARDGEEREES 93 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHH
Confidence 34566666666655555555555554 366777888888 5777777776653222221 12223332222
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccchhHHHHH
Q 025912 151 EINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREI 203 (246)
Q Consensus 151 ~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qa 203 (246)
-|..--+|-..=+++|-.|.+|+..+|+|+-+.+.--|-=-+.+.+.-+-...
T Consensus 94 LLqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~ 146 (772)
T KOG0999|consen 94 LLQESAAKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAA 146 (772)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Confidence 23333345566678888888888888888887776555433444444444443
No 379
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=35.23 E-value=6.2e+02 Score=27.51 Aligned_cols=108 Identities=18% Similarity=0.353 Sum_probs=57.1
Q ss_pred HhhHHHHHHHHHhhHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchhhHHHHH
Q 025912 52 AIQHSDIQSLLQDNQRLAATHVA---LKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAEL 128 (246)
Q Consensus 52 a~Q~~EiqrLl~dNqRLAatHva---LrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~lk~El 128 (246)
.++-.|+...|++|+.|.+.--. .-.+|.++.+||--+-.+-..=--|=+.++-.....-... ...++.+|.||
T Consensus 404 e~eleeL~~~L~e~qkll~ekk~~eki~E~lq~~eqel~~llq~~ekev~dLe~~l~~~~~~eq~y---skQVeeLKtEL 480 (786)
T PF05483_consen 404 EVELEELKKILAEKQKLLDEKKQFEKIAEELQGTEQELTGLLQIREKEVHDLEIQLTTIKESEQHY---SKQVEELKTEL 480 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHH---HHHHHHHHHHH
Confidence 34566788889999988765433 3456777777766654433322223333333333322221 23356666666
Q ss_pred HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 025912 129 DRV-------RADIEKLCVIKQEMIKDLNEINGDLAKARDE 162 (246)
Q Consensus 129 ~Q~-------r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d 162 (246)
-+- -+-+.+|......|.-+...+.-+|.+.+.|
T Consensus 481 E~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qed 521 (786)
T PF05483_consen 481 EQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQED 521 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 653 2334444445555555555555555555544
No 380
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=35.14 E-value=3.5e+02 Score=24.62 Aligned_cols=54 Identities=17% Similarity=0.292 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhh
Q 025912 128 LDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGR 184 (246)
Q Consensus 128 l~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~R 184 (246)
+.++..+...|...++++-...+.|...-.....+..+ |.+++.....++.++.
T Consensus 42 ~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~---Le~e~~e~~~~i~~l~ 95 (246)
T PF00769_consen 42 LKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQ---LEQELREAEAEIARLE 95 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443333333222222 4444444444444433
No 381
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=35.03 E-value=1.7e+02 Score=20.87 Aligned_cols=45 Identities=27% Similarity=0.427 Sum_probs=25.7
Q ss_pred hhhhhhhhHHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHH
Q 025912 92 VAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLC 139 (246)
Q Consensus 92 ~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~ 139 (246)
+....+.-+-.++..|=+++..|+.+ .+.|+.++..+..+++.|.
T Consensus 16 AAr~~R~RKk~~~~~Le~~~~~L~~e---n~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 16 AARRSRQRKKQYIEELEEKVEELESE---NEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 44445555666666666666666655 4455555555555554443
No 382
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=34.61 E-value=1.9e+02 Score=23.80 Aligned_cols=66 Identities=24% Similarity=0.323 Sum_probs=36.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhh---hhHHHHHHHHHHHhhhhHHhhhch
Q 025912 56 SDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVA--ASVK---AERDAEVRELYEKSLKLDAELRVI 121 (246)
Q Consensus 56 ~EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i--~~i~---aE~e~qiReL~ek~~KmEAelRa~ 121 (246)
.|.+.||-.=+.+...-+.++.++.....+|+-++... ...+ ..-..+++++++.+..+=.+++..
T Consensus 6 ~EA~~lLP~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~Gv~vKd~ 76 (120)
T PF09969_consen 6 EEANALLPLLRPILEEIRELKAELEELEERLQELEDSLEVNGLEAELEELEARLRELIDEIEELGVEVKDL 76 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHHHHHHcCcEEeCC
Confidence 35566666666666667777777777777776654332 1111 223344555555555555555444
No 383
>TIGR01808 CM_M_hiGC-arch monofunctional chorismate mutase, high GC gram positive type. This model represents the monofunctional chorismate mutase from high GC gram-positive bacteria and archaea. Trusted annotations from Corynebacterium and Pyrococcus are aparrently the sole chorismate mutase enzymes in their respective genomes. This is coupled with the presence in those genomes of the enzymes of the chorismate pathways both up- and downstream of chorismate mutase.
Probab=34.51 E-value=1.3e+02 Score=22.48 Aligned_cols=35 Identities=23% Similarity=0.409 Sum_probs=29.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGD 155 (246)
Q Consensus 121 ~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqe 155 (246)
.+.+|.++.++-.++-+|.+.|..++.+|..+.+.
T Consensus 2 l~~lR~~ID~ID~~ii~LL~~R~~~~~~i~~~K~~ 36 (74)
T TIGR01808 2 IDTLREEIDRLDAEILALVKRRAEISQAIGKARMA 36 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35688999999999999999999999988666554
No 384
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=34.41 E-value=7.2e+02 Score=28.02 Aligned_cols=151 Identities=9% Similarity=0.097 Sum_probs=0.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHH
Q 025912 56 SDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADI 135 (246)
Q Consensus 56 ~EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~ 135 (246)
..-...+.+=+.....-..|++.+..+-.+++.+...+...+.+. ...-+.-++ .++....
T Consensus 51 ~~tl~~l~~~~~~~~~~~~~~~~i~~ap~~~~~~~~~l~~~~~~~---------------~~~~~~~s~----~~Leq~l 111 (1109)
T PRK10929 51 QSALNWLEERKGSLERAKQYQQVIDNFPKLSAELRQQLNNERDEP---------------RSVPPNMST----DALEQEI 111 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhccc---------------ccccccCCH----HHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccchhH-HHHHHHHhHHHHHHH
Q 025912 136 EKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHE-QREIMEKNIISVAQQ 214 (246)
Q Consensus 136 q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~E-q~qaMEkNlisMarE 214 (246)
-.-.+.-+++..+.+.....+..+..-.++.| .+. ...++.++..++..--.+......-+ |....+--....-.+
T Consensus 112 ~~~~~~L~~~q~~l~~~~~~~~~~~~~l~~~p--q~~-~~~~~~l~~i~~~L~~~~~~~~~l~~a~~~~lqae~~~l~~~ 188 (1109)
T PRK10929 112 LQVSSQLLEKSRQAQQEQDRAREISDSLSQLP--QQQ-TEARRQLNEIERRLQTLGTPNTPLAQAQLTALQAESAALKAL 188 (1109)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHhhch--hhH-HHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhHhhh
Q 025912 215 IERLQAELANAEKR 228 (246)
Q Consensus 215 vEKLRaElanaEkR 228 (246)
++.|+.|+.++.+|
T Consensus 189 ~~~l~~~l~s~~~~ 202 (1109)
T PRK10929 189 VDELELAQLSANNR 202 (1109)
T ss_pred HHHHHHHHhccHHH
No 385
>PF14282 FlxA: FlxA-like protein
Probab=34.38 E-value=1.5e+02 Score=23.71 Aligned_cols=21 Identities=14% Similarity=0.313 Sum_probs=10.9
Q ss_pred hhhHHHHHHHHHHHHHHHhhh
Q 025912 164 KDMAAIKAEIETERQEIHKGR 184 (246)
Q Consensus 164 qqip~l~aEid~lrqElqr~R 184 (246)
+++-.|.++|..|...|..+.
T Consensus 51 ~q~q~Lq~QI~~LqaQI~qlq 71 (106)
T PF14282_consen 51 QQIQLLQAQIQQLQAQIAQLQ 71 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555554443
No 386
>KOG1510 consensus RNA polymerase II holoenzyme and mediator subcomplex, subunit SURB7/SRB7 [Transcription]
Probab=34.31 E-value=1.7e+02 Score=25.30 Aligned_cols=74 Identities=16% Similarity=0.298 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 78 ELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLA 157 (246)
Q Consensus 78 eL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~ 157 (246)
.|+.+-..+..|-..++....=-+.|.+. +.||+ .|..-+--|.+++...-..|-.+||.+-.+.+
T Consensus 64 ~i~~~akqId~LIdsLP~~~~~~e~Ql~~----i~kLq----------~en~e~~~el~~~v~~~e~Ll~~vq~~le~~a 129 (139)
T KOG1510|consen 64 DIAKKAKQIDTLIDSLPGEEGSAEAQLEK----IKKLQ----------EENEEVALELEELVSKGEKLLEQVQSLLEDIA 129 (139)
T ss_pred HHHHHHHHHHHHHHhCCCcccCHHHHHHH----HHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666655555555545444433 33444 44455566777888888889999999999999
Q ss_pred HHhhhhhh
Q 025912 158 KARDESKD 165 (246)
Q Consensus 158 r~~~d~qq 165 (246)
+.+.+.++
T Consensus 130 ~~~l~~k~ 137 (139)
T KOG1510|consen 130 DLQLNSKK 137 (139)
T ss_pred HHHHhccC
Confidence 88877665
No 387
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=34.19 E-value=4.2e+02 Score=25.26 Aligned_cols=8 Identities=38% Similarity=0.426 Sum_probs=3.2
Q ss_pred HHHHHhhH
Q 025912 218 LQAELANA 225 (246)
Q Consensus 218 LRaElana 225 (246)
..+.+.++
T Consensus 202 a~a~l~~a 209 (390)
T PRK15136 202 AATEVRNA 209 (390)
T ss_pred HHHHHHHH
Confidence 34444333
No 388
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=34.14 E-value=3.3e+02 Score=23.98 Aligned_cols=116 Identities=17% Similarity=0.240 Sum_probs=64.1
Q ss_pred HHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhh
Q 025912 104 VRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKG 183 (246)
Q Consensus 104 iReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~ 183 (246)
+-+|-+-..+||.|-+-.+.|-.=-.-+|.........=+-|+..++.+|.|+.+++.+... .=...+.|-...
T Consensus 59 s~dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~------ke~~~~~ee~~~ 132 (182)
T PF15035_consen 59 SPDLEEALIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQ------KEAEWREEEENF 132 (182)
T ss_pred cccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH
Confidence 45566677788888777777333223333333333334444455555555555554443321 113455555555
Q ss_pred hhhhhhhcccccchhHHHHHHHHhHHHHH----HHHHHHHHHHhhH
Q 025912 184 RAAIECEKKNRASNHEQREIMEKNIISVA----QQIERLQAELANA 225 (246)
Q Consensus 184 Raa~EyEKK~~~e~~Eq~qaMEkNlisMa----rEvEKLRaElana 225 (246)
-.-|.-|.+.-..+-.|..+.-.++.-|- |.+.++|+|++..
T Consensus 133 ~~y~~~eh~rll~LWr~v~~lRr~f~elr~~TerdL~~~r~e~~r~ 178 (182)
T PF15035_consen 133 NQYLSSEHSRLLSLWREVVALRRQFAELRTATERDLSDMRAEFART 178 (182)
T ss_pred HhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 56666666666666667777666665553 5566677777543
No 389
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=34.12 E-value=6.2e+02 Score=29.08 Aligned_cols=142 Identities=15% Similarity=0.265 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhch---------hhHHHHHHHHHH-------HHHHHHHH
Q 025912 78 ELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVI---------ESMHAELDRVRA-------DIEKLCVI 141 (246)
Q Consensus 78 eL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~---------e~lk~El~Q~r~-------e~q~L~a~ 141 (246)
.|...|+||.-|..--..+...+|- -=+--+.|||..|+.. ..+-+++.-+-. ||++..+.
T Consensus 1132 ~lnnlqqElklLRnEK~Rmh~~~dk---VDFSDIEkLE~qLq~~~~kL~dAyl~eitKqIsaLe~e~PKnltdvK~miss 1208 (1439)
T PF12252_consen 1132 NLNNLQQELKLLRNEKIRMHSGTDK---VDFSDIEKLEKQLQVIHTKLYDAYLVEITKQISALEKEKPKNLTDVKSMISS 1208 (1439)
T ss_pred HHHHHHHHHHHHHhHHHhhccCCCc---ccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhCCCchhhHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhh--------------------hhhhhhhcccccchhHHH
Q 025912 142 KQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKG--------------------RAAIECEKKNRASNHEQR 201 (246)
Q Consensus 142 RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~--------------------Raa~EyEKK~~~e~~Eq~ 201 (246)
=-+-++.+..+.+|--|.++...---.| .+||.|...||.. ..+|+-++|.--.++++.
T Consensus 1209 f~d~laeiE~LrnErIKkHGaSkePLDl-SDlDkLk~~LQ~iNQ~LV~~LIn~iR~slnqme~~tf~~q~~eiq~n~~ll 1287 (1439)
T PF12252_consen 1209 FNDRLAEIEFLRNERIKKHGASKEPLDL-SDLDKLKGQLQKINQNLVKALINTIRVSLNQMEVKTFEEQEKEIQQNLQLL 1287 (1439)
T ss_pred HHhhhhHHHHHHHHHhhccCCCCCccch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHH
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhh
Q 025912 202 EIMEKNIISVAQQIERLQAELAN 224 (246)
Q Consensus 202 qaMEkNlisMarEvEKLRaElan 224 (246)
-.++|.|.+ ..=.+|+|+++..
T Consensus 1288 ~~L~~tlD~-S~~a~Kqk~di~k 1309 (1439)
T PF12252_consen 1288 DKLEKTLDD-SDTAQKQKEDIVK 1309 (1439)
T ss_pred HHHHHHhcc-hHHHHHHHHHHHH
No 390
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=33.90 E-value=4.8e+02 Score=25.83 Aligned_cols=55 Identities=27% Similarity=0.384 Sum_probs=39.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhHhh
Q 025912 161 DESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANAEK 227 (246)
Q Consensus 161 ~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEkNlisMarEvEKLRaElanaEk 227 (246)
.++-|||.|+|+++.||+|+.+-+.+|--=-++- .+..-|-|-+.|--|-.=|++
T Consensus 248 ~~nPqi~~LkarieSlrkql~qe~q~isag~~~~------------sl~~qaAefq~l~lE~~fAek 302 (372)
T COG3524 248 PENPQIPGLKARIESLRKQLLQEKQAISAGGSSQ------------SLSNQAAEFQRLYLENTFAEK 302 (372)
T ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHhcCCCCcc------------chhHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999999988885322221 455566677766655444444
No 391
>PRK10698 phage shock protein PspA; Provisional
Probab=33.88 E-value=3.5e+02 Score=24.24 Aligned_cols=149 Identities=15% Similarity=0.232 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhhhhhhhhHHHHHHH-------HHHHhhhhHHhhhch----hhHHHHHHHHHHH
Q 025912 67 RLAATHVALKQELSLAEQELRHL-SSVAASVKAERDAEVRE-------LYEKSLKLDAELRVI----ESMHAELDRVRAD 134 (246)
Q Consensus 67 RLAatHvaLrQeL~aaq~El~~l-~~~i~~i~aE~e~qiRe-------L~ek~~KmEAelRa~----e~lk~El~Q~r~e 134 (246)
+..++.-.+.+++..++..+... ..+...++.-+|-=-|+ ..+++..|+.++... +.|+..+.++...
T Consensus 49 ~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~k 128 (222)
T PRK10698 49 RALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENK 128 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666777787777777776 34455566667777777 666666666666544 4557777777777
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHhhhhhh------hHHHHHHHHHHHHHHHhhhhhhhhhcccccchhHHHHHHHH
Q 025912 135 IEKLCVIKQEMIKDLNEIN--GDLAKARDESKD------MAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEK 206 (246)
Q Consensus 135 ~q~L~a~RQELs~qvq~lt--qeL~r~~~d~qq------ip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEk 206 (246)
++++-+-+..|.++.+... +.+...-+.... +--+..=|+.+--+-+- ++ + ......-.+...+|.
T Consensus 129 i~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~rmE~ki~~~Ea~aea----~~-~-~~~~~l~~e~~~le~ 202 (222)
T PRK10698 129 LSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFESFERRIDQMEAEAES----HG-F-GKQKSLDQQFAELKA 202 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhH----hh-c-cCCCCHHHHHHHhhc
Confidence 7777777777777655432 233333222221 11122223333222221 11 1 112234444555555
Q ss_pred hHHHHHHHHHHHHHHH
Q 025912 207 NIISVAQQIERLQAEL 222 (246)
Q Consensus 207 NlisMarEvEKLRaEl 222 (246)
+ -.+-.|+++|++.+
T Consensus 203 ~-~~ve~ELa~LK~~~ 217 (222)
T PRK10698 203 D-DEISEQLAALKAKM 217 (222)
T ss_pred c-chHHHHHHHHHHHh
Confidence 4 24677888888776
No 392
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=33.67 E-value=2.7e+02 Score=22.95 Aligned_cols=68 Identities=15% Similarity=0.272 Sum_probs=43.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----------hhhhhHHHHHHHHHHHHHHHhhhhhhhh
Q 025912 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARD-----------ESKDMAAIKAEIETERQEIHKGRAAIEC 189 (246)
Q Consensus 121 ~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~-----------d~qqip~l~aEid~lrqElqr~Raa~Ey 189 (246)
+++|+. ....=.-++.+...|..+..+++.+.+.|.+.++ ...+|..+..+|+.+..++..++.-|+.
T Consensus 92 ~e~L~~-y~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~ 170 (218)
T cd07596 92 LEPLKE-YLRYCQAVKETLDDRADALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEE 170 (218)
T ss_pred HhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344443 2233344666666777777777777777766654 3356777777888887777777765554
No 393
>smart00338 BRLZ basic region leucin zipper.
Probab=33.52 E-value=1.8e+02 Score=20.74 Aligned_cols=32 Identities=28% Similarity=0.415 Sum_probs=18.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 025912 55 HSDIQSLLQDNQRLAATHVALKQELSLAEQEL 86 (246)
Q Consensus 55 ~~EiqrLl~dNqRLAatHvaLrQeL~aaq~El 86 (246)
..+++.|-..|..|......|++++...++++
T Consensus 32 e~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 32 ERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555666666666666666666655555443
No 394
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=33.52 E-value=1.8e+02 Score=26.09 Aligned_cols=32 Identities=13% Similarity=0.252 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 025912 145 MIKDLNEINGDLAKARDESKDMAAIKAEIETE 176 (246)
Q Consensus 145 Ls~qvq~ltqeL~r~~~d~qqip~l~aEid~l 176 (246)
|..+-+.|.+|+..++.+..++-.+++|.+.|
T Consensus 74 l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L 105 (276)
T PRK13922 74 LREENEELKKELLELESRLQELEQLEAENARL 105 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444433333333333333
No 395
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=33.49 E-value=3.4e+02 Score=23.92 Aligned_cols=101 Identities=14% Similarity=0.270 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhh-hHHHHHHHHHHHHHHHhhhhhhhhhcccccch---h
Q 025912 124 MHAELDRVRADIEKLCVIKQEMIKDLN-EINGDLAKARDESKD-MAAIKAEIETERQEIHKGRAAIECEKKNRASN---H 198 (246)
Q Consensus 124 lk~El~Q~r~e~q~L~a~RQELs~qvq-~ltqeL~r~~~d~qq-ip~l~aEid~lrqElqr~Raa~EyEKK~~~e~---~ 198 (246)
++.=...+..+...+......++..++ .+...|.....+..+ .-.+..++..+++..+..-..++-=|+.|-.. +
T Consensus 58 l~~a~~~i~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~c~~~ 137 (236)
T cd07651 58 LKNSLDTLRLETESMAKSHLKFAKQIRQDLEEKLAAFASSYTQKRKKIQSHMEKLLKKKQDQEKYLEKAREKYEADCSKI 137 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 444466666677777777666666665 344555554444332 12223333444444333333333333332211 1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhHh
Q 025912 199 EQREIMEKNIISVAQQIERLQAELANAE 226 (246)
Q Consensus 199 Eq~qaMEkNlisMarEvEKLRaElanaE 226 (246)
+..+. +.|. ...+|++|+...+..++
T Consensus 138 e~~~~-~~~~-~~~ke~eK~~~k~~k~~ 163 (236)
T cd07651 138 NSYTL-QSQL-TWGKELEKNNAKLNKAQ 163 (236)
T ss_pred HHHHH-HHcc-cCcchHHHHHHHHHHHH
Confidence 11111 1122 23467777776664443
No 396
>PF03954 Lectin_N: Hepatic lectin, N-terminal domain; InterPro: IPR005640 Animal lectins display a wide variety of architectures. They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. C-type lectins display a wide range of specificities. They require Ca2+ for their activity They are found predominantly but not exclusively in vertebrates. This entry presents N-terminal domain, which is found in C-type lectins.; GO: 0005529 sugar binding, 0016020 membrane
Probab=33.34 E-value=1.7e+02 Score=25.30 Aligned_cols=79 Identities=13% Similarity=0.295 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccchhHHHHH
Q 025912 124 MHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREI 203 (246)
Q Consensus 124 lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qa 203 (246)
++.|+..++.--.+.++. ..++|+.++.. -.+-..+|+.|.++++.-+||++- .+.+.+.|.|-
T Consensus 60 lq~dl~tLretfsNFsss---t~aEvqaL~S~---G~sl~~kVtSLea~lEkqqQeLkA----------dhS~lllhvk~ 123 (138)
T PF03954_consen 60 LQRDLRTLRETFSNFSSS---TLAEVQALSSQ---GGSLQDKVTSLEAKLEKQQQELKA----------DHSTLLLHVKQ 123 (138)
T ss_pred HHHHHHHHHHHHhcccHH---HHHHHHHHHhc---cccHHhHcccHHHHHHHHHHHHhh----------hHHHHHHHHHH
Q ss_pred HHHhHHHHHHHHHHH
Q 025912 204 MEKNIISVAQQIERL 218 (246)
Q Consensus 204 MEkNlisMarEvEKL 218 (246)
.=++|-+++-.+.-|
T Consensus 124 ~~~DLr~LsCQma~l 138 (138)
T PF03954_consen 124 FPKDLRSLSCQMAFL 138 (138)
T ss_pred HHHHHhhhhhhhhcC
No 397
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=33.25 E-value=60 Score=23.96 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhh
Q 025912 165 DMAAIKAEIETERQEIHKGRAAIE 188 (246)
Q Consensus 165 qip~l~aEid~lrqElqr~Raa~E 188 (246)
.+|.+...|++++.|++..|..+|
T Consensus 8 ~~~~~~~~i~tvk~en~~i~~~ve 31 (55)
T PF05377_consen 8 ELPRIESSINTVKKENEEISESVE 31 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366667777777777777776554
No 398
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=33.20 E-value=3.9e+02 Score=24.54 Aligned_cols=12 Identities=33% Similarity=0.487 Sum_probs=3.8
Q ss_pred HHHHHHHHHHHH
Q 025912 75 LKQELSLAEQEL 86 (246)
Q Consensus 75 LrQeL~aaq~El 86 (246)
+.+.|...+.++
T Consensus 195 ~d~~L~~~ek~~ 206 (297)
T PF02841_consen 195 ADQQLTEKEKEI 206 (297)
T ss_dssp H-TTS-HHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 399
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=33.13 E-value=25 Score=27.66 Aligned_cols=32 Identities=19% Similarity=0.256 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 025912 67 RLAATHVALKQELSLAEQELRHLSSVAASVKA 98 (246)
Q Consensus 67 RLAatHvaLrQeL~aaq~El~~l~~~i~~i~a 98 (246)
.|+.+...|..+....+.++..|..-+...+.
T Consensus 29 ~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~ 60 (131)
T PF05103_consen 29 ELAEELERLQRENAELKEEIEELQAQLEELRE 60 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCCT------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 46666777777777777777666665555543
No 400
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=33.09 E-value=97 Score=26.37 Aligned_cols=60 Identities=18% Similarity=0.313 Sum_probs=42.2
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhHhhh
Q 025912 160 RDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANAEKR 228 (246)
Q Consensus 160 ~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEkNlisMarEvEKLRaElanaEkR 228 (246)
..+..+.-.|+.|+..+++|+...-+.=||=|-++ .+..+..+-.|++++..++......
T Consensus 36 ~~~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaK---------l~Rk~~kl~~el~~~~~~~~~~~~~ 95 (161)
T PF04420_consen 36 SKSSKEQRQLRKEILQLKRELNAISAQDEFAKWAK---------LNRKLDKLEEELEKLNKSLSSEKSS 95 (161)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHH---------HHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677889999999999988877777766555 3555666777888887777555443
No 401
>PRK13824 replication initiation protein RepC; Provisional
Probab=32.64 E-value=3.7e+02 Score=26.45 Aligned_cols=77 Identities=22% Similarity=0.302 Sum_probs=47.5
Q ss_pred HHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Q 025912 104 VRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQE---------MIKDLNEINGDLAKARDESKDMAAIKAEIE 174 (246)
Q Consensus 104 iReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQE---------Ls~qvq~ltqeL~r~~~d~qqip~l~aEid 174 (246)
..||.+-+.+..+|-+....+|.++.-+|-||.+|...=.+ +...++.+..-|-|- .....+-.+..++.
T Consensus 148 ~~El~~~A~~~~ae~~~~r~lr~~it~~rRdi~~li~~a~~~~~~~~w~~~~~~~~~i~~~l~R~-~~~~~l~~l~~~l~ 226 (404)
T PRK13824 148 AEEFEALAEQVAAERKALRRLRERLTLCRRDIAKLIEAAIEEGVPGDWEGVEQRFRAIVARLPRR-ATLAELEPILDELE 226 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCC-CcHHHHHHHHHHHH
Confidence 45666677777888888888899999999999888865332 222223332222222 23445556666666
Q ss_pred HHHHHHH
Q 025912 175 TERQEIH 181 (246)
Q Consensus 175 ~lrqElq 181 (246)
.++.++.
T Consensus 227 ~l~~~~~ 233 (404)
T PRK13824 227 ALREEVV 233 (404)
T ss_pred HHHHHHH
Confidence 6666553
No 402
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=32.63 E-value=85 Score=21.89 Aligned_cols=29 Identities=34% Similarity=0.466 Sum_probs=15.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 122 ESMHAELDRVRADIEKLCVIKQEMIKDLN 150 (246)
Q Consensus 122 e~lk~El~Q~r~e~q~L~a~RQELs~qvq 150 (246)
+.++.+-.-+..|.++|.+.-+.|+++++
T Consensus 15 d~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 15 DSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45555555555555555555555555443
No 403
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=32.61 E-value=2.7e+02 Score=26.47 Aligned_cols=35 Identities=14% Similarity=0.408 Sum_probs=30.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGD 155 (246)
Q Consensus 121 ~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqe 155 (246)
.+.+|+++.++-.++-+|.+.|..++.+|-.+.++
T Consensus 5 L~~lR~~ID~iD~~iv~Ll~~R~~~~~~ia~~K~~ 39 (374)
T PRK11199 5 LTALRDQIDEVDKQLLELLAKRLELVAQVGEVKSR 39 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57789999999999999999999999988776665
No 404
>PHA01750 hypothetical protein
Probab=32.61 E-value=1.3e+02 Score=23.51 Aligned_cols=35 Identities=31% Similarity=0.594 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 122 ESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDL 156 (246)
Q Consensus 122 e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL 156 (246)
|-++.||.-++.+++.+.---.+|..||..+.+.+
T Consensus 38 eIV~~ELdNL~~ei~~~kikqDnl~~qv~eik~k~ 72 (75)
T PHA01750 38 EIVNSELDNLKTEIEELKIKQDELSRQVEEIKRKL 72 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 77899999999999998855556777776665544
No 405
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=32.32 E-value=3.2e+02 Score=23.28 Aligned_cols=20 Identities=5% Similarity=0.081 Sum_probs=13.1
Q ss_pred HHHHHHhhhhhhhhhccccc
Q 025912 176 ERQEIHKGRAAIECEKKNRA 195 (246)
Q Consensus 176 lrqElqr~Raa~EyEKK~~~ 195 (246)
..+.+..++..|++||+.-.
T Consensus 121 a~~~~~~A~~~I~~ek~~a~ 140 (184)
T PRK13455 121 IARRLAAAEDQIASAEAAAV 140 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44556677778888776543
No 406
>PRK11820 hypothetical protein; Provisional
Probab=32.31 E-value=4.3e+02 Score=24.84 Aligned_cols=21 Identities=19% Similarity=0.411 Sum_probs=17.4
Q ss_pred HhHHHHHHHHHHHHHHHhhHh
Q 025912 206 KNIISVAQQIERLQAELANAE 226 (246)
Q Consensus 206 kNlisMarEvEKLRaElanaE 226 (246)
.-.|.|--|+||+|..+.|-|
T Consensus 268 ~~vVe~K~elEkiREQVQNIE 288 (288)
T PRK11820 268 NLVVELKVLIEQMREQVQNIE 288 (288)
T ss_pred HHHHHHHHHHHHHHHHHhcCC
Confidence 346779999999999999864
No 407
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=32.24 E-value=2e+02 Score=23.05 Aligned_cols=26 Identities=15% Similarity=0.247 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 025912 138 LCVIKQEMIKDLNEINGDLAKARDES 163 (246)
Q Consensus 138 L~a~RQELs~qvq~ltqeL~r~~~d~ 163 (246)
|.-.++-|..++..+.++++.+..+.
T Consensus 71 Ll~~q~~L~~~~~~l~~~~~~~~~~~ 96 (118)
T PF13815_consen 71 LLHCQEYLSSQLEQLEERLQELQQEI 96 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555444444333
No 408
>COG1344 FlgL Flagellin and related hook-associated proteins [Cell motility and secretion]
Probab=32.17 E-value=4.4e+02 Score=24.88 Aligned_cols=80 Identities=20% Similarity=0.192 Sum_probs=64.9
Q ss_pred HHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhhhhHHHHHHHHHHHHHHHhhh
Q 025912 108 YEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARD---ESKDMAAIKAEIETERQEIHKGR 184 (246)
Q Consensus 108 ~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~---d~qqip~l~aEid~lrqElqr~R 184 (246)
+-.+.+|..+++..+.+..=+.-+.+=+|-=...-++.+.-+|.+..-+-.+.. ....--++..||+.|..|+.+.=
T Consensus 46 ~~is~~l~~~~~~L~q~~~n~~~g~s~lqtae~aL~~~~~~lqrirelavqaan~t~s~~dr~~iq~Ei~~l~~el~~ia 125 (360)
T COG1344 46 LAIALRLRSQIRGLSQAKDNAQDGISKLQTAEGALSEISKILQRIKELAVQAANGTLSDADRAAIQKEIEQLLDELDNIA 125 (360)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778899999999888888888888888888888888888888888877773 34557789999999999999865
Q ss_pred hhh
Q 025912 185 AAI 187 (246)
Q Consensus 185 aa~ 187 (246)
.+-
T Consensus 126 ntt 128 (360)
T COG1344 126 NTT 128 (360)
T ss_pred hcc
Confidence 443
No 409
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=31.93 E-value=4.8e+02 Score=25.28 Aligned_cols=114 Identities=25% Similarity=0.344 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHhh----hhhhhhHHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHH----------------H
Q 025912 74 ALKQELSLAEQELRHLSSVA----ASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVR----------------A 133 (246)
Q Consensus 74 aLrQeL~aaq~El~~l~~~i----~~i~aE~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r----------------~ 133 (246)
.|+.+..+-+.+|.+|..-. ..+..|.|.=|--|--++.+|+++=|. |...|.|.- .
T Consensus 146 ~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~---Lq~~l~~~~s~~~s~~d~~~~~~~~D 222 (310)
T PF09755_consen 146 RLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRR---LQEKLEQPVSAPPSPRDTVNVSEEND 222 (310)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHccccCCCCCcchHHhhcccCC
Confidence 34444444444444443322 223455666666666777777776443 333333210 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhhHHHHHHHHHHHHHHHhhhhhhhhh
Q 025912 134 DIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAIECE 190 (246)
Q Consensus 134 e~q~L~a~RQELs~qvq~ltqeL~r~~~d-~qqip~l~aEid~lrqElqr~Raa~EyE 190 (246)
.++++.+.=+.|...|..|.+.|..++.+ .-+++....|-..++.|-.|+|..+.-|
T Consensus 223 t~e~~~shI~~Lr~EV~RLR~qL~~sq~e~~~k~~~~~~eek~ireEN~rLqr~L~~E 280 (310)
T PF09755_consen 223 TAERLSSHIRSLRQEVSRLRQQLAASQQEHSEKMAQYLQEEKEIREENRRLQRKLQRE 280 (310)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12333333333333333344443333322 2235555666666666666666665544
No 410
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=31.45 E-value=6.5e+02 Score=26.61 Aligned_cols=141 Identities=18% Similarity=0.266 Sum_probs=0.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH---HHhhhhHHhhhchhhHHHHHHHHHHHHHH
Q 025912 61 LLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELY---EKSLKLDAELRVIESMHAELDRVRADIEK 137 (246)
Q Consensus 61 Ll~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~---ek~~KmEAelRa~e~lk~El~Q~r~e~q~ 137 (246)
.+.....+..+-..|.++|.-.+....++.......+.+++.--..+- +...+...=..-.+..+.++..++.++..
T Consensus 173 ~~k~~~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~l~~ 252 (670)
T KOG0239|consen 173 ALKESLKLESDLGDLVTELEHVTNSISELESVLKSAQEERRVLADSLGNYADLRRNIKPLEGLESTIKKKIQALQQELEE 252 (670)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhHHHhhhhhhhhhhHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccchhHHHHHHHHhH
Q 025912 138 LCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNI 208 (246)
Q Consensus 138 L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEkNl 208 (246)
|...-.+|..++..++++++.....+... ..++..+...+..-- -|+..+-.+.-+.+.+.-|+
T Consensus 253 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~L~~~~~~l~~~~----~e~~~r~kL~N~i~eLkGnI 316 (670)
T KOG0239|consen 253 LKAELKELNDQVSLLTREVQEALKESNTL---QSDLESLEENLVEKK----KEKEERRKLHNEILELKGNI 316 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhcCc
No 411
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=31.43 E-value=3.6e+02 Score=23.61 Aligned_cols=64 Identities=17% Similarity=0.257 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhhh
Q 025912 123 SMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIE 188 (246)
Q Consensus 123 ~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~E 188 (246)
.+..++..+..+...|...-++|..+...+.+......... .-....||+-|++..+++++-++
T Consensus 124 ~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~--~k~~~~ei~~lk~~~~ql~~~l~ 187 (189)
T PF10211_consen 124 ELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEE--EKKHQEEIDFLKKQNQQLKAQLE 187 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444444444444444333222211 22346677777777777666543
No 412
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=31.39 E-value=2e+02 Score=25.41 Aligned_cols=24 Identities=8% Similarity=0.202 Sum_probs=9.9
Q ss_pred ccchhHHHHHHHHhHHHHHHHHHH
Q 025912 194 RASNHEQREIMEKNIISVAQQIER 217 (246)
Q Consensus 194 ~~e~~Eq~qaMEkNlisMarEvEK 217 (246)
+.++.....+++..+=+|..=+++
T Consensus 127 ~~~L~~~~~~~~eDY~~L~~Im~R 150 (161)
T TIGR02894 127 LEKLRQRLSTIEEDYQTLIDIMDR 150 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444443333
No 413
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=31.31 E-value=2.9e+02 Score=22.48 Aligned_cols=42 Identities=10% Similarity=0.166 Sum_probs=32.2
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhhhhcccccchhHHHHHHHH
Q 025912 165 DMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEK 206 (246)
Q Consensus 165 qip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEk 206 (246)
-+..|..-|...++.+..++..+|.-++...+-.-..++|||
T Consensus 72 fl~~L~~~i~~q~~~v~~~~~~ve~~r~~~~ea~~~~k~~ek 113 (146)
T PRK07720 72 FVTNLERTIDHYQLLVMQAREQMNRKQQDLTEKNIEVKKYEK 113 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367777788888888888888888877777777777777665
No 414
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=31.15 E-value=83 Score=31.91 Aligned_cols=39 Identities=26% Similarity=0.229 Sum_probs=34.5
Q ss_pred HhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 52 AIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLS 90 (246)
Q Consensus 52 a~Q~~EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~ 90 (246)
....+.+..|...|.+|+++-...|++|...+.+|.+|.
T Consensus 4 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 42 (512)
T TIGR03689 4 RELQATNSSLGARNAKLAELLKAARDKLSKLKSQLEQLA 42 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344677889999999999999999999999999999994
No 415
>PRK06285 chorismate mutase; Provisional
Probab=30.97 E-value=2.5e+02 Score=21.74 Aligned_cols=35 Identities=14% Similarity=0.388 Sum_probs=29.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGD 155 (246)
Q Consensus 121 ~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqe 155 (246)
.+.+|.++.++-.++-+|.+.|..++.+|-.+.++
T Consensus 9 L~elR~~ID~ID~~iv~Ll~~R~~l~~~I~~~K~~ 43 (96)
T PRK06285 9 LNEIRKRIDEIDEQIIDLIAERTSLAKEIAELKKS 43 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788889889899999999999999988766665
No 416
>COG3166 PilN Tfp pilus assembly protein PilN [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=30.82 E-value=1e+02 Score=27.82 Aligned_cols=38 Identities=11% Similarity=0.095 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhh
Q 025912 149 LNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAA 186 (246)
Q Consensus 149 vq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa 186 (246)
..-|++|+..+.++.+.|+-++.+.+.+.|.+|+....
T Consensus 57 ~~~L~~e~~~l~~~~aei~~l~~~~~~~~qr~q~~~~~ 94 (206)
T COG3166 57 NALLTTEIALLDAEIAEIQQLKEQTQALLQRLQVIEQL 94 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34456666666666667777777777777776666555
No 417
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=30.61 E-value=3.6e+02 Score=23.32 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=24.7
Q ss_pred HHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 105 RELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDL 149 (246)
Q Consensus 105 ReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qv 149 (246)
.+++.++.+|.+++.+.|. +++.=+.+|...|++|..=+
T Consensus 25 q~~~~~I~~L~~e~~~ld~------~i~~~~~~L~~~~~~L~~~~ 63 (188)
T PF10018_consen 25 QENQARIQQLRAEIEELDE------QIRDILKQLKEARKELRTLP 63 (188)
T ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666555543 45666667777777777755
No 418
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=30.46 E-value=1.6e+02 Score=23.64 Aligned_cols=34 Identities=26% Similarity=0.259 Sum_probs=23.0
Q ss_pred HhHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHH
Q 025912 45 HHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQE 78 (246)
Q Consensus 45 ~~LEe~La~Q~~EiqrLl~dNqRLAatHvaLrQe 78 (246)
.-+..+++.+..|++.|-.+|+.|......|+.+
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~ 63 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGG 63 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 3566777777777777777777776666666654
No 419
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=30.31 E-value=6.4e+02 Score=26.16 Aligned_cols=33 Identities=21% Similarity=0.302 Sum_probs=21.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHhhHhhhHhHHHhhhhc
Q 025912 200 QREIMEKNIISVAQQIERLQAELANAEKRARAAAAAAAV 238 (246)
Q Consensus 200 q~qaMEkNlisMarEvEKLRaElanaEkRa~a~~aaaa~ 238 (246)
++|.-||-|-.---.+|||+. ||....+++-++
T Consensus 355 krqnaekql~~Ake~~eklkK------Krssv~gtl~va 387 (575)
T KOG4403|consen 355 KRQNAEKQLKEAKEMAEKLKK------KRSSVFGTLHVA 387 (575)
T ss_pred HhhhHHHHHHHHHHHHHHHHH------hhcchheeeeec
Confidence 466777777777777888874 666655544333
No 420
>TIGR01807 CM_P2 chorismate mutase domain of proteobacterial P-protein, clade 2. This model represents one of two separate clades of the chorismate mutase domain of the gamma and beta and epsilon proteobacterial "P-protein" which contains an N-terminal chorismate mutase domain and a C-terminal prephenate dehydratase domain. It is also found in Aquifex aolicus.
Probab=30.29 E-value=1.6e+02 Score=21.72 Aligned_cols=34 Identities=18% Similarity=0.362 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 122 ESMHAELDRVRADIEKLCVIKQEMIKDLNEINGD 155 (246)
Q Consensus 122 e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqe 155 (246)
+.+|.++.++-.++=.|-+.|..++.+|..+.++
T Consensus 2 ~~lR~~ID~iD~~iv~Ll~~R~~~~~~i~~~K~~ 35 (76)
T TIGR01807 2 EELRNKIDAIDDRILDLLSERATYAQAVGELKGS 35 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5789999999999999999999999988666554
No 421
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=30.23 E-value=2.7e+02 Score=24.87 Aligned_cols=68 Identities=10% Similarity=0.242 Sum_probs=35.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhh
Q 025912 122 ESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECE 190 (246)
Q Consensus 122 e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyE 190 (246)
+-+-.+...+.+.++.|...++.|..-+..-. .+.-.-.=-+++-.++.|||.++..+..+...++|-
T Consensus 128 ~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~-~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~~s 195 (262)
T PF14257_consen 128 EDVTEQYVDLEARLKNLEAEEERLLELLEKAK-TVEDLLEIERELSRVRSEIEQLEGQLKYLDDRVDYS 195 (262)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhceE
Confidence 44455555555555555555444444332111 111111222345567777888888887777777664
No 422
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=30.21 E-value=1.9e+02 Score=22.51 Aligned_cols=41 Identities=20% Similarity=0.299 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q 025912 137 KLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETER 177 (246)
Q Consensus 137 ~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lr 177 (246)
.|....+.|-.+++.+.+.+.+.......+-.++.+|+.+.
T Consensus 3 ~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~ 43 (129)
T cd00890 3 ELAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLK 43 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44455555555555555556666555666666667777765
No 423
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=30.14 E-value=5.3e+02 Score=25.14 Aligned_cols=84 Identities=24% Similarity=0.258 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHHHH
Q 025912 100 RDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESK----DMAAIKAEIET 175 (246)
Q Consensus 100 ~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~q----qip~l~aEid~ 175 (246)
.|+-.++++-+-..|+|--|.++-+-.|- .|.++=|+...++|+...-|.-+.+|-. +|--=++|++.
T Consensus 80 ~e~ls~~~~~~~~~~~aa~Rplel~e~Ek--------vlk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr 151 (338)
T KOG3647|consen 80 CEMLSKELLHKESLMSAAQRPLELLEVEK--------VLKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELER 151 (338)
T ss_pred HHHHHHHHHHHHHHHHHHcCCccHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 57778888888889999988888777765 3344444444455555544444444432 23444556666
Q ss_pred HHHH---HHhhhhhh--hhhc
Q 025912 176 ERQE---IHKGRAAI--ECEK 191 (246)
Q Consensus 176 lrqE---lqr~Raa~--EyEK 191 (246)
+|+= ||..|-+| |||+
T Consensus 152 ~rkRle~LqsiRP~~MdEyE~ 172 (338)
T KOG3647|consen 152 TRKRLEALQSIRPAHMDEYED 172 (338)
T ss_pred HHHHHHHHHhcchHHHHHHHH
Confidence 6553 34445544 5665
No 424
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=30.07 E-value=2e+02 Score=28.79 Aligned_cols=24 Identities=17% Similarity=0.315 Sum_probs=15.9
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhh
Q 025912 165 DMAAIKAEIETERQEIHKGRAAIE 188 (246)
Q Consensus 165 qip~l~aEid~lrqElqr~Raa~E 188 (246)
..+.++..++.+++|++.+|...+
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~ 386 (448)
T PF05761_consen 363 SSSELRPDISELRKERRELRREMK 386 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHHh
Confidence 566666777777777776665543
No 425
>TIGR01805 CM_mono_grmpos monofunctional chorismate mutase, gram positive-type, clade 2. This model represents a clade of chorismate mutase proteins/domains from gram positive species. The sequence from Enterococcus is fused to the C-terminus of an aparrent acetyltransferase, and the seuence from Clostridium acetobutylicum (but not perfringens) is fused to the N-terminus of shikimate-5-dehydrogenase, another enzyme of the chorismate pathway. All the other members of this clade are mono-functional. Members of this clade from Streptococcus and Lactococcus have been found which represent the sole chorismate mutase domain in their respective genomes which also exhibit evidence of the enzymes of both the upstream and downstream branches of the chorismate pathways.
Probab=30.06 E-value=1.7e+02 Score=21.86 Aligned_cols=34 Identities=15% Similarity=0.315 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 122 ESMHAELDRVRADIEKLCVIKQEMIKDLNEINGD 155 (246)
Q Consensus 122 e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqe 155 (246)
+.+|.++.++-.++-.|.+.|-.++.+|-.+.++
T Consensus 2 ~~lR~~Id~iD~~i~~Ll~~R~~~~~~i~~~K~~ 35 (81)
T TIGR01805 2 ELIRKKIDEIDDKLVVLFEERMEVVKEIAAYKKK 35 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999988766554
No 426
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=30.04 E-value=4.1e+02 Score=23.88 Aligned_cols=11 Identities=18% Similarity=0.377 Sum_probs=4.9
Q ss_pred HHHHHHHHhhH
Q 025912 215 IERLQAELANA 225 (246)
Q Consensus 215 vEKLRaElana 225 (246)
+..+++++..+
T Consensus 188 i~~~~~~l~~a 198 (334)
T TIGR00998 188 VQEAKERLKTA 198 (334)
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 427
>PF08898 DUF1843: Domain of unknown function (DUF1843); InterPro: IPR014994 This domain is found in functionally uncharacterised proteins. It can be found independently or at the C terminus of the protein.
Probab=29.77 E-value=47 Score=24.45 Aligned_cols=18 Identities=44% Similarity=0.711 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHhhHhhh
Q 025912 211 VAQQIERLQAELANAEKR 228 (246)
Q Consensus 211 MarEvEKLRaElanaEkR 228 (246)
++..+++|.+||+..|.|
T Consensus 36 i~~al~~Lk~EIaklE~R 53 (53)
T PF08898_consen 36 IAAALEKLKAEIAKLEAR 53 (53)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 567788999999988865
No 428
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=29.73 E-value=3.3e+02 Score=22.65 Aligned_cols=76 Identities=17% Similarity=0.125 Sum_probs=51.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHH
Q 025912 59 QSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKL 138 (246)
Q Consensus 59 qrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L 138 (246)
+.-.-|--.|...+.+|-+.|++..+=|.-|...+.++ |+. .+.....+.++...|+.+
T Consensus 16 ~~~~~~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~------------------e~~---le~d~~~L~~Le~~~~~~ 74 (160)
T PF13094_consen 16 REDSFDYEQLLDRKRALERQLAANLHQLELLQEEIEKE------------------EAA---LERDYEYLQELEKNAKAL 74 (160)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHH---HHHHHHHHHHHHHHHHHH
Confidence 44456678899999999999998888777765544432 222 445556677777777777
Q ss_pred HHHHHHHHHHHHHHHHH
Q 025912 139 CVIKQEMIKDLNEINGD 155 (246)
Q Consensus 139 ~a~RQELs~qvq~ltqe 155 (246)
.+.+.++..++..+-+-
T Consensus 75 ~~e~~~~~~~~~~vL~~ 91 (160)
T PF13094_consen 75 EREREEEEKKAHPVLQL 91 (160)
T ss_pred HHHHHHHHhccchhhcc
Confidence 77777777776544443
No 429
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=29.68 E-value=4.3e+02 Score=24.02 Aligned_cols=44 Identities=18% Similarity=0.125 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 025912 53 IQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASV 96 (246)
Q Consensus 53 ~Q~~EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~i 96 (246)
.+..-|..|....+++=....-|.+.-..+.++.++|.....+-
T Consensus 30 e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~ 73 (246)
T PF00769_consen 30 ESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQ 73 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444455555555555555554444333
No 430
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=29.68 E-value=3.9e+02 Score=23.46 Aligned_cols=36 Identities=14% Similarity=0.228 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhh
Q 025912 150 NEINGDLAKARDESKDMAAIKAEIETERQEIHKGRA 185 (246)
Q Consensus 150 q~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Ra 185 (246)
..+..++.|.+.-.++-..-..+++..+.++..+++
T Consensus 81 ~~~~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~~ 116 (322)
T TIGR01730 81 ELAQRSFERAERLVKRNAVSQADLDDAKAAVEAAQA 116 (322)
T ss_pred HHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHH
Confidence 334444444443333333345566666655554443
No 431
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=29.46 E-value=7.2e+02 Score=26.50 Aligned_cols=20 Identities=15% Similarity=0.272 Sum_probs=12.0
Q ss_pred HHHHhhHHHHHHHHHhhHHH
Q 025912 49 DRIAIQHSDIQSLLQDNQRL 68 (246)
Q Consensus 49 e~La~Q~~EiqrLl~dNqRL 68 (246)
+.+.....++.+|+.+=.+.
T Consensus 509 ~~~~~~~~~~~~li~~l~~~ 528 (782)
T PRK00409 509 KLIGEDKEKLNELIASLEEL 528 (782)
T ss_pred HHHhhhhhHHHHHHHHHHHH
Confidence 45566666777776654443
No 432
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=29.46 E-value=6.7e+02 Score=26.15 Aligned_cols=60 Identities=30% Similarity=0.375 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHH
Q 025912 75 LKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEM 145 (246)
Q Consensus 75 LrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQEL 145 (246)
|++||...+.-|..|...- ..|.+.+++|+|..+ .++-|-.=...+-+-+.-|.+++||-
T Consensus 229 l~kEi~~~~~~l~~l~~lc-----~~d~e~~e~~~kl~~------~l~~l~~~~~rvss~AE~lGAv~QE~ 288 (538)
T PF05781_consen 229 LKKEIENCLKLLESLAPLC-----WEDNESREIIQKLQK------SLDVLHQCATRVSSRAEMLGAVHQES 288 (538)
T ss_pred HHHHHHHHHHHHHHhcccc-----hhhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 5666666666666543331 246777887776543 24555555556666666777777773
No 433
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=29.43 E-value=5.1e+02 Score=24.75 Aligned_cols=86 Identities=15% Similarity=0.246 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 74 ALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEIN 153 (246)
Q Consensus 74 aLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~lt 153 (246)
.|++||.-.=.+++-|.....++.--. +--+..-+..+|-+-.+|.-.-|==+.-.+.+.
T Consensus 161 ~l~~eLqkr~~~v~~l~~q~~k~~~~q--------------------v~~in~qlErLRL~krrlQl~g~Ld~~~q~~~~ 220 (289)
T COG4985 161 PLERELQKRLLEVETLRDQVDKMVEQQ--------------------VRVINSQLERLRLEKRRLQLNGQLDDEFQQHYV 220 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHhhcccccHHHHHHHH
Q ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHh
Q 025912 154 GDLAKARDESKDMAAIKAEIETERQEIHK 182 (246)
Q Consensus 154 qeL~r~~~d~qqip~l~aEid~lrqElqr 182 (246)
-|+.+++...++ |..++++|++|+.|
T Consensus 221 ae~seLq~r~~~---l~~~L~~L~~e~~r 246 (289)
T COG4985 221 AEKSELQKRLAQ---LQTELDALRAELER 246 (289)
T ss_pred HHHHHHHHHHHH---HHHHHHHHhhhhhh
No 434
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=29.12 E-value=2.6e+02 Score=21.25 Aligned_cols=23 Identities=17% Similarity=0.099 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025912 67 RLAATHVALKQELSLAEQELRHL 89 (246)
Q Consensus 67 RLAatHvaLrQeL~aaq~El~~l 89 (246)
.+.+|...|+.|+...+.+-..+
T Consensus 15 ~aveti~~Lq~e~eeLke~n~~L 37 (72)
T PF06005_consen 15 QAVETIALLQMENEELKEKNNEL 37 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Confidence 44455555555555555543333
No 435
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=29.07 E-value=2.7e+02 Score=22.92 Aligned_cols=48 Identities=19% Similarity=0.187 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhhhh
Q 025912 139 CVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIEC 189 (246)
Q Consensus 139 ~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~Ey 189 (246)
-..=..|..++..+.+++..++. ++-.|..|--.|+-|-+++|.-++-
T Consensus 7 fd~l~~le~~l~~l~~el~~LK~---~~~el~EEN~~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 7 FDALDDLEQNLGVLLKELGALKK---QLAELLEENTALRLENDKLRERLEE 54 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344556666666666665554 3455677777888888888877775
No 436
>PF14182 YgaB: YgaB-like protein
Probab=28.93 E-value=2.9e+02 Score=21.85 Aligned_cols=24 Identities=21% Similarity=0.426 Sum_probs=17.8
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhh
Q 025912 165 DMAAIKAEIETERQEIHKGRAAIE 188 (246)
Q Consensus 165 qip~l~aEid~lrqElqr~Raa~E 188 (246)
.+-.++.||..+++++.-.+..||
T Consensus 41 ~l~~i~~EI~~mkk~Lk~Iq~~Fe 64 (79)
T PF14182_consen 41 ELHSIQEEISQMKKELKEIQRVFE 64 (79)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777888888877777776
No 437
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=28.84 E-value=2.5e+02 Score=21.06 Aligned_cols=51 Identities=18% Similarity=0.340 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Q 025912 122 ESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAE 172 (246)
Q Consensus 122 e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aE 172 (246)
+.+..++...-.|+..+...=.++..+|+.-.+.+...-...+.++.--.+
T Consensus 36 ~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~~v~~ 86 (90)
T PF06103_consen 36 DTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLGESVSE 86 (90)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555555555555555555555544433
No 438
>PRK07857 hypothetical protein; Provisional
Probab=28.81 E-value=1.5e+02 Score=24.35 Aligned_cols=38 Identities=21% Similarity=0.302 Sum_probs=32.0
Q ss_pred hhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 118 LRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGD 155 (246)
Q Consensus 118 lRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqe 155 (246)
.-..+.+|.++.++-.++-+|.+.|-.++.+|..+.++
T Consensus 27 ~~~L~~lR~eID~ID~eIl~LL~eR~~la~eIg~~K~~ 64 (106)
T PRK07857 27 DAEIDELREEIDRLDAEILALVKRRTEVSQAIGKARMA 64 (106)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34567799999999999999999999999988877765
No 439
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=28.67 E-value=1.6e+02 Score=27.03 Aligned_cols=83 Identities=23% Similarity=0.299 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHhhhhhhhHHHHHH---------------
Q 025912 123 SMHAELDRVRADIEKLCVIKQEMIKD---------------LNEINGDLAKARDESKDMAAIKAE--------------- 172 (246)
Q Consensus 123 ~lk~El~Q~r~e~q~L~a~RQELs~q---------------vq~ltqeL~r~~~d~qqip~l~aE--------------- 172 (246)
.+|.||.++-.||..| ||=|+++ ...|+|++.|..-|+|--.+-..=
T Consensus 48 elr~EL~kvEeEI~TL---rqVLaAKerH~~ELKRKLGlt~~~EL~qnisksw~d~q~st~y~kt~~~~g~~~~~vy~~~ 124 (208)
T KOG4010|consen 48 ELRTELAKVEEEIVTL---RQVLAAKERHAAELKRKLGLTVLKELKQNISKSWKDVQASTAYVKTSQSVGTFTKTVYEAP 124 (208)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHhhhhhHHHHHHhhhhhccccceeeecc
Confidence 5667777777666544 3333332 467889999888888765555441
Q ss_pred --HHHHHHHHHhhhhhhhh------hcccccchhHHHHHHHHhH
Q 025912 173 --IETERQEIHKGRAAIEC------EKKNRASNHEQREIMEKNI 208 (246)
Q Consensus 173 --id~lrqElqr~Raa~Ey------EKK~~~e~~Eq~qaMEkNl 208 (246)
.+.|-|-.|..=++|-- +|=+.+.|-+-++..|-.+
T Consensus 125 ~tqetlSqagQKtsaa~ssvgs~Is~Kl~dmkNS~tfkSfE~~v 168 (208)
T KOG4010|consen 125 LTQETLSQAGQKTSAAFSSVGSAISRKLGDMKNSATFKSFEEKV 168 (208)
T ss_pred cchhhHHhhhHHHHHHHHHHhHHHHHHHhcccccHHHHHHHHHH
Confidence 14455666777776653 4444555555555555443
No 440
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=28.65 E-value=4.1e+02 Score=23.48 Aligned_cols=84 Identities=12% Similarity=0.249 Sum_probs=68.2
Q ss_pred HHHHHHHHhhhhHHhhh----chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q 025912 103 EVRELYEKSLKLDAELR----VIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQ 178 (246)
Q Consensus 103 qiReL~ek~~KmEAelR----a~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrq 178 (246)
++-.+.++--++|-+|- ..+..++=+.-.+.++..|...=++|..-+.-+++|+.=..+..-|.-.+ ++|.|..
T Consensus 45 ~id~imer~~~ieNdlg~~~~~~~g~kk~~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~--~veel~e 122 (157)
T COG3352 45 VIDAIMERMTDIENDLGKVKIEIEGQKKQLQDIKEELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRG--IVEELEE 122 (157)
T ss_pred HHHHHHHHHHHHHhhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHH--HHHHHHH
Confidence 45566777778899998 66889999999999999999999999999999999999999888887766 7777776
Q ss_pred HHHhhhhhhh
Q 025912 179 EIHKGRAAIE 188 (246)
Q Consensus 179 Elqr~Raa~E 188 (246)
++-..+--++
T Consensus 123 qV~el~~i~e 132 (157)
T COG3352 123 QVNELKMIVE 132 (157)
T ss_pred HHHHHHHHHH
Confidence 6655554333
No 441
>PRK00106 hypothetical protein; Provisional
Probab=28.53 E-value=6.7e+02 Score=25.85 Aligned_cols=17 Identities=29% Similarity=0.135 Sum_probs=6.4
Q ss_pred HHHHHHhhhhhhhhhcc
Q 025912 176 ERQEIHKGRAAIECEKK 192 (246)
Q Consensus 176 lrqElqr~Raa~EyEKK 192 (246)
+++|.-..-..+|.|-|
T Consensus 182 ~~~~~~~~i~~~e~~a~ 198 (535)
T PRK00106 182 LTHEIATRIREAEREVK 198 (535)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33343333333343333
No 442
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=28.41 E-value=5.6e+02 Score=24.88 Aligned_cols=77 Identities=14% Similarity=0.312 Sum_probs=45.8
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 025912 83 EQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE 162 (246)
Q Consensus 83 q~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d 162 (246)
.-||..|+..++.++-|- +=|-..+.||.| |....|+|+.|++- .....|--|..+=.++.|=..-.+-.
T Consensus 88 etEI~eLksQL~RMrEDW------IEEECHRVEAQL-ALKEARkEIkQLkQ---vieTmrssL~ekDkGiQKYFvDINiQ 157 (305)
T PF15290_consen 88 ETEIDELKSQLARMREDW------IEEECHRVEAQL-ALKEARKEIKQLKQ---VIETMRSSLAEKDKGIQKYFVDINIQ 157 (305)
T ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH-HHHHHHHHHHHHHH---HHHHHHhhhchhhhhHHHHHhhhhhh
Confidence 446666666666655443 445667778887 45566888888875 55667777877744444433333444
Q ss_pred hhhhHHH
Q 025912 163 SKDMAAI 169 (246)
Q Consensus 163 ~qqip~l 169 (246)
+.++-.|
T Consensus 158 N~KLEsL 164 (305)
T PF15290_consen 158 NKKLESL 164 (305)
T ss_pred HhHHHHH
Confidence 4444433
No 443
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=28.40 E-value=6.3e+02 Score=25.47 Aligned_cols=16 Identities=13% Similarity=0.212 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 025912 72 HVALKQELSLAEQELR 87 (246)
Q Consensus 72 HvaLrQeL~aaq~El~ 87 (246)
.-.|.+.+...+.|++
T Consensus 16 I~~L~~~i~~~k~eV~ 31 (593)
T PF06248_consen 16 ISRLSRRIEELKEEVH 31 (593)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344455555555554
No 444
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=28.38 E-value=6.3e+02 Score=26.42 Aligned_cols=54 Identities=37% Similarity=0.536 Sum_probs=34.4
Q ss_pred hHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhch
Q 025912 54 QHSDIQSLL---QDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVI 121 (246)
Q Consensus 54 Q~~EiqrLl---~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~ 121 (246)
--..||.|| .||-|+..--+. --+.||.+ .-=+|.++||-++|..-+|-++|+.
T Consensus 504 ll~niq~llkva~dnar~qekQiq------~Ek~ELkm--------d~lrerelreslekql~~ErklR~~ 560 (641)
T KOG3915|consen 504 LLTNIQGLLKVAIDNARAQEKQIQ------LEKTELKM--------DFLRERELRESLEKQLAMERKLRAI 560 (641)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666665 577776654332 22334432 1126778899999999999998876
No 445
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=28.31 E-value=2.6e+02 Score=20.94 Aligned_cols=37 Identities=22% Similarity=0.369 Sum_probs=26.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 122 ESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAK 158 (246)
Q Consensus 122 e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r 158 (246)
+.+..+...+..++.+|......+..++..+...|..
T Consensus 65 ~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~ 101 (106)
T PF01920_consen 65 EELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYE 101 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666777777777777777777777777666543
No 446
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=28.26 E-value=3.3e+02 Score=24.19 Aligned_cols=70 Identities=16% Similarity=0.247 Sum_probs=30.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHH
Q 025912 62 LQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADI 135 (246)
Q Consensus 62 l~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~ 135 (246)
..+...--.+|. .+|||..+- .+|.+.+...+.|=+.+|.+|-.++.+||.=.+....+|.....+..|.
T Consensus 91 iv~~tsancs~Q-VqqeL~~tf---~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL 160 (171)
T PF04799_consen 91 IVSFTSANCSHQ-VQQELSSTF---ARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESEL 160 (171)
T ss_dssp --------------------HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcchHHH-HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334333333333 456665553 3555666666666666666666666666665555555555555444443
No 447
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=28.15 E-value=3.9e+02 Score=23.06 Aligned_cols=107 Identities=24% Similarity=0.332 Sum_probs=71.6
Q ss_pred HhHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchhh
Q 025912 45 HHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHL-SSVAASVKAERDAEVRELYEKSLKLDAELRVIES 123 (246)
Q Consensus 45 ~~LEe~La~Q~~EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~l-~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~ 123 (246)
.+|++-|..-...|..+-..=.+..+...-|.+++..++.++..+ ..+...++.-+|---|..+.+...++..+ +.
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~---~~ 102 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQA---ER 102 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH---HH
Confidence 477777777777777766666667777778888888888888877 44455567778888888888888888774 44
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 124 MHAELDRVRADIEKLCVIKQEMIKDLNEING 154 (246)
Q Consensus 124 lk~El~Q~r~e~q~L~a~RQELs~qvq~ltq 154 (246)
++..+.++...+.+|...-.+|..++..+..
T Consensus 103 l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~ 133 (221)
T PF04012_consen 103 LEQQLDQAEAQVEKLKEQLEELEAKLEELKS 133 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555554444444444444433
No 448
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=28.15 E-value=2.2e+02 Score=21.71 Aligned_cols=46 Identities=28% Similarity=0.393 Sum_probs=30.1
Q ss_pred hHHHHHHhh-HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 46 HLEDRIAIQ-HSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSS 91 (246)
Q Consensus 46 ~LEe~La~Q-~~EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~ 91 (246)
.||++|... ...++.++.+|=-|-.+...|++||..-+.-|..+..
T Consensus 25 fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~ 71 (75)
T PF07989_consen 25 FLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAEK 71 (75)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888732 4556777777777766666777666666666655433
No 449
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=28.13 E-value=2.7e+02 Score=21.10 Aligned_cols=56 Identities=16% Similarity=0.219 Sum_probs=0.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHh
Q 025912 58 IQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAE 117 (246)
Q Consensus 58 iqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAe 117 (246)
|..|+.--++|-.+...||+++++.+.|=..|..-....+.-=|. ++.+...||.+
T Consensus 9 le~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEa----mI~RLk~leq~ 64 (65)
T TIGR02449 9 VEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEA----MITRLKALEQH 64 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhhhccC
No 450
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=27.90 E-value=3.7e+02 Score=22.63 Aligned_cols=95 Identities=16% Similarity=0.197 Sum_probs=53.5
Q ss_pred HHhhhhHHhhhchhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhh
Q 025912 109 EKSLKLDAELRVIESMHAELDRVRADIE-KLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAI 187 (246)
Q Consensus 109 ek~~KmEAelRa~e~lk~El~Q~r~e~q-~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~ 187 (246)
+|..++..+|...+..+.|..++..+.+ +|..+|.+-..-+.....+-.....+ .+-..+.|.+.+ +..+|..|
T Consensus 41 ~R~~~I~~~l~~Ae~~k~eAe~~~~~~e~~L~~A~~ea~~Ii~~A~~~a~~~~~~--~~~~A~~ea~~~---~~~A~~~I 115 (167)
T PRK14475 41 AYAAKIQAELDEAQRLREEAQALLADVKAEREEAERQAAAMLAAAKADARRMEAE--AKEKLEEQIKRR---AEMAERKI 115 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH---HHHHHHHH
Confidence 4455667777777777777777777765 35556666555555555554433222 122334444443 45788888
Q ss_pred hhhcccccchhHHHHHHHHhHHHHHHH
Q 025912 188 ECEKKNRASNHEQREIMEKNIISVAQQ 214 (246)
Q Consensus 188 EyEKK~~~e~~Eq~qaMEkNlisMarE 214 (246)
+.|++.-. +.+.+.++.+|-+
T Consensus 116 ~~e~~~a~------~el~~e~~~lAv~ 136 (167)
T PRK14475 116 AQAEAQAA------ADVKAAAVDLAAQ 136 (167)
T ss_pred HHHHHHHH------HHHHHHHHHHHHH
Confidence 88876433 3334444444444
No 451
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=27.73 E-value=5.3e+02 Score=28.83 Aligned_cols=12 Identities=33% Similarity=0.556 Sum_probs=7.4
Q ss_pred HHHHHHHHHHhh
Q 025912 101 DAEVRELYEKSL 112 (246)
Q Consensus 101 e~qiReL~ek~~ 112 (246)
|.+.|.++|..+
T Consensus 233 E~~tr~~Id~~L 244 (1123)
T PRK11448 233 EEETRILIDQQL 244 (1123)
T ss_pred HHHHHHHHHHHH
Confidence 566666776444
No 452
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=27.62 E-value=4.7e+02 Score=23.79 Aligned_cols=85 Identities=9% Similarity=0.092 Sum_probs=41.5
Q ss_pred HHhhhhHHhhhchhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhh
Q 025912 109 EKSLKLDAELRVIESMHAELDRVRADIEK-LCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAI 187 (246)
Q Consensus 109 ek~~KmEAelRa~e~lk~El~Q~r~e~q~-L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~ 187 (246)
+|-.++..+|...+..+.|..+...+.++ |...+++-..-+....++-.+... .-+-.-+.|.+.+ ...+|..+
T Consensus 36 eR~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~eA~~~~~--~il~~A~~ea~~~---~~~a~~~i 110 (250)
T PRK14474 36 KRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASFMAQAQEAADEQRQ--HLLNEAREDVATA---RDEWLEQL 110 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH---HHHHHHHH
Confidence 34445556666666666666555555432 333333333333333333222211 1133444555444 35677788
Q ss_pred hhhcccccchh
Q 025912 188 ECEKKNRASNH 198 (246)
Q Consensus 188 EyEKK~~~e~~ 198 (246)
+.||+.....+
T Consensus 111 e~Ek~~a~~~L 121 (250)
T PRK14474 111 EREKQEFFKAL 121 (250)
T ss_pred HHHHHHHHHHH
Confidence 88886655444
No 453
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=27.60 E-value=4.9e+02 Score=23.95 Aligned_cols=20 Identities=10% Similarity=0.135 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHhhhhhh
Q 025912 168 AIKAEIETERQEIHKGRAAI 187 (246)
Q Consensus 168 ~l~aEid~lrqElqr~Raa~ 187 (246)
...+.+...+.++..++..+
T Consensus 187 ~~~a~~~~~~a~l~~a~~~l 206 (346)
T PRK10476 187 ALVAQRAAREAALAIAELHL 206 (346)
T ss_pred hhHHHHHHHHHHHHHHHHHh
Confidence 34444445555555444443
No 454
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=27.48 E-value=2.3e+02 Score=20.07 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhh
Q 025912 166 MAAIKAEIETERQEIHKGRAAIE 188 (246)
Q Consensus 166 ip~l~aEid~lrqElqr~Raa~E 188 (246)
+-.||.++..-.+|+..+|.+|+
T Consensus 17 l~elk~~l~~Q~kE~~~LRntI~ 39 (45)
T PF11598_consen 17 LQELKELLRQQIKETRFLRNTIM 39 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777788899999999886
No 455
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=27.42 E-value=4.4e+02 Score=23.39 Aligned_cols=73 Identities=19% Similarity=0.226 Sum_probs=46.1
Q ss_pred hhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhhHHHHHHHHHHHHHHHhhhhhh
Q 025912 112 LKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAI 187 (246)
Q Consensus 112 ~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d-~qqip~l~aEid~lrqElqr~Raa~ 187 (246)
.-||+. ...+.++|..++.+|+.++..|+---..+..--+.|.+-..+ +.+.-.+...+..|++|+...|.-.
T Consensus 139 ~~Le~~---~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~ 212 (221)
T PF05700_consen 139 EQLEAM---LKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKA 212 (221)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555 456677888888899999998876655544444444443333 3445566667777777777666543
No 456
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=27.36 E-value=3.4e+02 Score=22.04 Aligned_cols=18 Identities=22% Similarity=0.252 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHhhhhHHh
Q 025912 100 RDAEVRELYEKSLKLDAE 117 (246)
Q Consensus 100 ~e~qiReL~ek~~KmEAe 117 (246)
.|-.+..++.+..++=.-
T Consensus 14 ~dr~l~~l~k~~~~~~~~ 31 (139)
T PF05615_consen 14 DDRPLKRLLKRFLKWCNL 31 (139)
T ss_pred CchhHHHHHHHHHHHHhh
Confidence 455666666666666433
No 457
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=27.11 E-value=4.3e+02 Score=23.17 Aligned_cols=15 Identities=13% Similarity=0.138 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHhhH
Q 025912 211 VAQQIERLQAELANA 225 (246)
Q Consensus 211 MarEvEKLRaElana 225 (246)
+..+++.++..+.+.
T Consensus 121 ~~~~l~~~~~~~~~~ 135 (322)
T TIGR01730 121 AKASLASAQLNLRYT 135 (322)
T ss_pred HHHHHHHHHHhhccC
Confidence 334445555544443
No 458
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=27.05 E-value=5.4e+02 Score=24.24 Aligned_cols=118 Identities=16% Similarity=0.236 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhch-hhHHHHHHHHHHHHHHHHHHHHHH
Q 025912 67 RLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVI-ESMHAELDRVRADIEKLCVIKQEM 145 (246)
Q Consensus 67 RLAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~-e~lk~El~Q~r~e~q~L~a~RQEL 145 (246)
.|...=..|...+..++.||+-|+++-..=---+=++|.+|.-.+..+-.+-..- +.+..-...+++ +|....|+=
T Consensus 85 ~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqdEldel~e~~~~el~---~l~~~~q~k 161 (258)
T PF15397_consen 85 KLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQDELDELNEMRQMELA---SLSRKIQEK 161 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Q ss_pred HHHHHH-----------------------HHHHHHHHhhhhhh----hHHHHHHHHHHHHHHHhhhhhh
Q 025912 146 IKDLNE-----------------------INGDLAKARDESKD----MAAIKAEIETERQEIHKGRAAI 187 (246)
Q Consensus 146 s~qvq~-----------------------ltqeL~r~~~d~qq----ip~l~aEid~lrqElqr~Raa~ 187 (246)
.-+|-+ +.+++.+.+.+..+ ||.|++|++.|+...+.-|-.|
T Consensus 162 ~~~il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~~~Re~i 230 (258)
T PF15397_consen 162 KEEILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQDPREVI 230 (258)
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHh
No 459
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=26.88 E-value=3.9e+02 Score=22.64 Aligned_cols=84 Identities=11% Similarity=0.219 Sum_probs=49.8
Q ss_pred HHhhhhHHhhhchhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhh
Q 025912 109 EKSLKLDAELRVIESMHAELDRVRADI-EKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAI 187 (246)
Q Consensus 109 ek~~KmEAelRa~e~lk~El~Q~r~e~-q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~ 187 (246)
+|-.++..++...+..+.+......+. ++|..+|++-..-+....++-.+...+. +-..+.|.+ +-+..++..+
T Consensus 49 ~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~a~~~a~~~~~~~--~~~A~~ea~---~~~~~A~~~I 123 (173)
T PRK13453 49 KRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQKILEDAKVQARQQQEQI--IHEANVRAN---GMIETAQSEI 123 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH---HHHHHHHHHH
Confidence 455566666777777777777776666 4566666666666655555543332221 233344444 3455688888
Q ss_pred hhhcccccch
Q 025912 188 ECEKKNRASN 197 (246)
Q Consensus 188 EyEKK~~~e~ 197 (246)
+.||+.-...
T Consensus 124 ~~ek~~a~~~ 133 (173)
T PRK13453 124 NSQKERAIAD 133 (173)
T ss_pred HHHHHHHHHH
Confidence 8888765543
No 460
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=26.83 E-value=84 Score=22.56 Aligned_cols=28 Identities=21% Similarity=0.351 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhhhccc
Q 025912 166 MAAIKAEIETERQEIHKGRAAIECEKKN 193 (246)
Q Consensus 166 ip~l~aEid~lrqElqr~Raa~EyEKK~ 193 (246)
|.+|+..++.|+.+++++.++|.-=||.
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~~fs~yKKa 28 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQAAFSQYKKA 28 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888888888899988888766653
No 461
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.49 E-value=3.2e+02 Score=25.63 Aligned_cols=30 Identities=10% Similarity=0.279 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025912 131 VRADIEKLCVIKQEMIKDLNEINGDLAKAR 160 (246)
Q Consensus 131 ~r~e~q~L~a~RQELs~qvq~ltqeL~r~~ 160 (246)
++.|+.++....+.|.++|..++..+...+
T Consensus 55 L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~ 84 (247)
T COG3879 55 LVKELRSLQKKVNTLAAEVEDLENKLDSVR 84 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555555555554444
No 462
>PHA03332 membrane glycoprotein; Provisional
Probab=26.45 E-value=1e+03 Score=27.33 Aligned_cols=57 Identities=16% Similarity=0.286 Sum_probs=28.5
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHH
Q 025912 83 EQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEM 145 (246)
Q Consensus 83 q~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQEL 145 (246)
++=+..+...|.++-++-+..|++.--|+-+||.+ +..-+.++..-+.+|...-.++
T Consensus 911 sDai~klGnti~kisatl~~nI~avNgRIs~Led~------VN~r~~~v~~~intLA~ql~~~ 967 (1328)
T PHA03332 911 SDVITKLGDTIAKISATLDNNIRAVNGRVSDLEDQ------VNLRFLAVATNFNTLATQLKEL 967 (1328)
T ss_pred HHHHHHhhhHHHHHHHHHHhhHHHhcccHHHHHHH------HHHHHHHHHHHHHHHHHHhhhh
Confidence 33333444445555555555555555555555544 3344555666555555443333
No 463
>PF10704 DUF2508: Protein of unknown function (DUF2508); InterPro: IPR019644 This entry represents a protein family of unknown function that is conserved in the firmicutes.
Probab=26.38 E-value=2.7e+02 Score=20.66 Aligned_cols=49 Identities=18% Similarity=0.121 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhcccccchhHHHHHHHHhHHHHHHHH
Q 025912 167 AAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQI 215 (246)
Q Consensus 167 p~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEkNlisMarEv 215 (246)
..|..+|+..++|++++|..|+.--...-+..=|.++-|..+.=+-+|+
T Consensus 15 ~~Ll~~I~~ak~ew~~a~~~~~~~~D~~d~~iy~~k~ae~kY~fLlreA 63 (71)
T PF10704_consen 15 EELLEEIEQAKQEWENARRLFENVVDLIDEAIYQLKAAEAKYFFLLREA 63 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999877766666667777777766555554
No 464
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=26.28 E-value=2.9e+02 Score=20.90 Aligned_cols=20 Identities=5% Similarity=0.160 Sum_probs=8.9
Q ss_pred hHHHHHHHHHHHHHHHhhhh
Q 025912 166 MAAIKAEIETERQEIHKGRA 185 (246)
Q Consensus 166 ip~l~aEid~lrqElqr~Ra 185 (246)
...|.-++..+=+++|.+..
T Consensus 91 ~~~L~~~f~~~m~~fq~~Q~ 110 (117)
T smart00503 91 TEKLRKKFKEVMNEFQRLQR 110 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 465
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=26.11 E-value=4e+02 Score=22.46 Aligned_cols=21 Identities=14% Similarity=0.347 Sum_probs=10.2
Q ss_pred hhHHHHHHHHHHHHHHHhhhh
Q 025912 165 DMAAIKAEIETERQEIHKGRA 185 (246)
Q Consensus 165 qip~l~aEid~lrqElqr~Ra 185 (246)
..|.|..+.+....++...|.
T Consensus 139 ~~P~ll~Dy~~~~~~~~~l~~ 159 (177)
T PF13870_consen 139 GVPALLRDYDKTKEEVEELRK 159 (177)
T ss_pred CCcHHHHHHHHHHHHHHHHHH
Confidence 445555555544444444443
No 466
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=26.02 E-value=4.9e+02 Score=23.42 Aligned_cols=87 Identities=15% Similarity=0.211 Sum_probs=46.3
Q ss_pred hHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchhhHH
Q 025912 46 HLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMH 125 (246)
Q Consensus 46 ~LEe~La~Q~~EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~lk 125 (246)
-++..+......+..+......+-.+.-.+..++..++..+......+...+.+-+. ...|+++..-=+.+ .+..+
T Consensus 77 ~~~~~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~l~~a~~~~~r-~~~L~~~g~is~~~---~~~a~ 152 (334)
T TIGR00998 77 NAELALAKAEANLAALVRQTKQLEITVQQLQAKVESLKIKLEQAREKLLQAELDLRR-RVPLFKKGLISREE---LDHAR 152 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHCCCcCHHH---HHHHH
Confidence 466667766777766666655555555556666666666555554444433333322 33555554444443 24445
Q ss_pred HHHHHHHHHHH
Q 025912 126 AELDRVRADIE 136 (246)
Q Consensus 126 ~El~Q~r~e~q 136 (246)
.++.++.++++
T Consensus 153 ~~~~~a~~~l~ 163 (334)
T TIGR00998 153 KALLSAKAALN 163 (334)
T ss_pred HHHHHHHHHHH
Confidence 55555555433
No 467
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=25.87 E-value=4.2e+02 Score=23.42 Aligned_cols=56 Identities=21% Similarity=0.365 Sum_probs=32.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhh
Q 025912 58 IQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKL 114 (246)
Q Consensus 58 iqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~Km 114 (246)
.+.|..+|++|-..--.|++.+...+.|+..|..-...++-|-+. +-.+++++.||
T Consensus 99 ~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~-L~~Im~RARkl 154 (161)
T TIGR02894 99 DQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQT-LIDIMDRARKL 154 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 445556666666666666666666666666665555444444332 34566777765
No 468
>PRK06665 flgK flagellar hook-associated protein FlgK; Validated
Probab=25.74 E-value=6e+02 Score=26.30 Aligned_cols=75 Identities=15% Similarity=0.168 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccchhHHHHHHHHh
Q 025912 129 DRVRADIEKLCVIKQEMIKDLNEINGDLAK-ARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKN 207 (246)
Q Consensus 129 ~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r-~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEkN 207 (246)
..|...++.|...=..+..+++.+..++.. ....+.+|..+-.+|..|-++|..+.+. -..-.+++.|+..+-+-
T Consensus 142 ~~vl~~A~~La~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~qIa~LN~qI~~~~~~----g~~~ndLlDqRD~ll~e 217 (627)
T PRK06665 142 QVVLERAQSLGERIHDRYRSLERIRDMANDEIEITVEEINNILRNIADLNEQIVKSQAM----GDNPNDLLDRRDLLVDK 217 (627)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----CCCchhhHHHHHHHHHH
Confidence 346777788888888888888888887764 5677888999999999999999877553 23456888888875443
No 469
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=25.68 E-value=2.7e+02 Score=23.17 Aligned_cols=52 Identities=17% Similarity=0.192 Sum_probs=35.2
Q ss_pred hhhHHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 97 KAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNE 151 (246)
Q Consensus 97 ~aE~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ 151 (246)
+..-|++=-+|--||+.||+|.|+.+.++.+|. --|+-|.-+-+...++...
T Consensus 20 R~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~---rrIkMLE~aLkqER~k~~~ 71 (134)
T PF08232_consen 20 RNQWEIERAEMKARIAFLEGERRGQENLKKDLK---RRIKMLEYALKQERAKYKK 71 (134)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhc
Confidence 345566777888899999999999999988872 2355555554444444433
No 470
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=25.64 E-value=8.2e+02 Score=25.92 Aligned_cols=39 Identities=15% Similarity=0.220 Sum_probs=28.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Q 025912 63 QDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERD 101 (246)
Q Consensus 63 ~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~e 101 (246)
.++.++..+...|.|.|-.-..++...++...+++-+.=
T Consensus 414 ~~~~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~ 452 (607)
T KOG0240|consen 414 EEEDILTERIESLYQQLDQKDDQINKQSQLMEKLKEQLL 452 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577777788888888877777777777777766665443
No 471
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=25.64 E-value=3.6e+02 Score=28.64 Aligned_cols=57 Identities=23% Similarity=0.392 Sum_probs=38.6
Q ss_pred HHHHHHhhhhhhhhHH-------HHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHH
Q 025912 86 LRHLSSVAASVKAERD-------AEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQE 144 (246)
Q Consensus 86 l~~l~~~i~~i~aE~e-------~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQE 144 (246)
|+.+=.-++.-.+|+| .+..++|. .|+|.-=.+...+..|+.+.++++-.|.+..-+
T Consensus 23 L~~IW~~igE~~~e~d~~l~~le~e~~~~y~--~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~ 86 (660)
T KOG4302|consen 23 LQKIWDEIGESETERDKKLLRLEQECLEIYK--RKVEEASESKARLLQEIAVIEAELNDLCSALGE 86 (660)
T ss_pred HHHHHHHhCccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 5555555555555555 56667777 677777777778888888888877666665443
No 472
>COG5293 Predicted ATPase [General function prediction only]
Probab=25.54 E-value=7.9e+02 Score=25.69 Aligned_cols=106 Identities=18% Similarity=0.237 Sum_probs=0.0
Q ss_pred HHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHh---hhhhhhHHHHHHHHHHH
Q 025912 107 LYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIK------QEMIKDLNEINGDLAKAR---DESKDMAAIKAEIETER 177 (246)
Q Consensus 107 L~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~R------QELs~qvq~ltqeL~r~~---~d~qqip~l~aEid~lr 177 (246)
|=+++.++++||..+++-+.++-.-|+|--..-..| |-|....-.+.-||+-.. ++..|.-++..=|..++
T Consensus 340 l~~ei~~i~~dLk~~n~~~~~l~~~rae~l~~Lk~~g~~e~y~~l~ee~~~~~~elae~~~rie~l~k~~~~~~~i~~lk 419 (591)
T COG5293 340 LQEEIAEIEGDLKEVNAELDDLGKRRAEGLAFLKNRGVFEKYQTLCEEIIALRGELAELEYRIEPLRKLHALDQYIGTLK 419 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhhhhhhhhcccccchhHHHHHHHHhHHHHH
Q 025912 178 QEIHKGRAAIECEKKNRASNHEQREIMEKNIISVA 212 (246)
Q Consensus 178 qElqr~Raa~EyEKK~~~e~~Eq~qaMEkNlisMa 212 (246)
+|+-+.-..+=-|-.-....++...-.=|||+-..
T Consensus 420 he~l~~~~r~y~e~q~q~~~~~~~~~lF~~~~r~~ 454 (591)
T COG5293 420 HECLDLEERIYTEVQQQCSLFASIGRLFKEMIREV 454 (591)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
No 473
>PRK12584 flagellin A; Reviewed
Probab=25.49 E-value=6.8e+02 Score=25.40 Aligned_cols=83 Identities=14% Similarity=0.077 Sum_probs=63.8
Q ss_pred HHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hhhhHHHHHHHHHHHHHHHhhhh
Q 025912 109 EKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE---SKDMAAIKAEIETERQEIHKGRA 185 (246)
Q Consensus 109 ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d---~qqip~l~aEid~lrqElqr~Ra 185 (246)
-.+.+|..+++..+....=+....+-+|.=...-++++.-+|.+..-+-.+..+ ...--++..||..|..||.+.=.
T Consensus 49 aia~~l~~~i~~l~q~~~N~~~g~s~lqtae~aL~~i~~~Lqr~relavqaangt~s~~dR~ai~~Ei~~L~~ei~~ian 128 (510)
T PRK12584 49 TIADSLRSQASSLGQAIANTNDGMGIIQVADKAMDEQLKILDTIKVKATQAAQDGQTTESRKAIQSDIVRLIQGLDNIGN 128 (510)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 367788899988888888888888888888888888888888887665555432 34677899999999999998766
Q ss_pred hhhhhc
Q 025912 186 AIECEK 191 (246)
Q Consensus 186 a~EyEK 191 (246)
.=+|--
T Consensus 129 ~t~fnG 134 (510)
T PRK12584 129 TTTYNG 134 (510)
T ss_pred hCCcCC
Confidence 444443
No 474
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=25.43 E-value=46 Score=32.22 Aligned_cols=78 Identities=21% Similarity=0.303 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhch----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 77 QELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVI----ESMHAELDRVRADIEKLCVIKQEMIKDLNEI 152 (246)
Q Consensus 77 QeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~----e~lk~El~Q~r~e~q~L~a~RQELs~qvq~l 152 (246)
-+|....+.|..|...+..+..- +..+..++.-|+++|..+ ..++.+|.-+..+|+.|...=..|+..|-.+
T Consensus 28 GDLs~I~eRLsaLEssv~sL~~S----Vs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~l 103 (326)
T PF04582_consen 28 GDLSPIRERLSALESSVASLSDS----VSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSL 103 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhh
Confidence 45555555565555555554432 556666666666665543 4555566666666666655555566555555
Q ss_pred HHHHHH
Q 025912 153 NGDLAK 158 (246)
Q Consensus 153 tqeL~r 158 (246)
+..+.-
T Consensus 104 S~~ls~ 109 (326)
T PF04582_consen 104 SSTLSD 109 (326)
T ss_dssp ------
T ss_pred hhhhhh
Confidence 555443
No 475
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=25.39 E-value=8.8e+02 Score=26.20 Aligned_cols=130 Identities=22% Similarity=0.267 Sum_probs=68.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhch-hhHHHHHHHHHHHHH
Q 025912 58 IQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVI-ESMHAELDRVRADIE 136 (246)
Q Consensus 58 iqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~-e~lk~El~Q~r~e~q 136 (246)
|.+++-.=.-++....-|...+-.......++.....-+.-++| ++-+||.+..|==.++-+. +.+-.++.---....
T Consensus 393 l~~~~~~~~~~~tq~~Dl~~~~~~~~~~~krl~~~l~~~tk~re-qlk~lV~~~~k~~~e~e~s~~~~~~~i~~~k~~~e 471 (716)
T KOG4593|consen 393 LARRLQKRALLLTQERDLNRAILGSKDDEKRLAEELPQVTKERE-QLKGLVQKVDKHSLEMEASMEELYREITGQKKRLE 471 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhHHHHHHHH-HHHHHHHHHHHhhHhhhhhhHHHHHHHHHHHHHHH
Confidence 33333333333344444555555556666666666666665654 4666776655433332222 222222221111222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHhhhhhhh
Q 025912 137 KLCVIKQEMIKDLNEINGDLAKARDESK----DMAAIKAEIETERQEIHKGRAAIE 188 (246)
Q Consensus 137 ~L~a~RQELs~qvq~ltqeL~r~~~d~q----qip~l~aEid~lrqElqr~Raa~E 188 (246)
+|.-.=.+|-+++-...|+|...+.+.. .|-...-|++.|++|-.|+|+..+
T Consensus 472 ~le~~~kdL~s~L~~~~q~l~~qr~e~~~~~e~i~~~~ke~~~Le~En~rLr~~~e 527 (716)
T KOG4593|consen 472 KLEHELKDLQSQLSSREQSLLFQREESELLREKIEQYLKELELLEEENDRLRAQLE 527 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444445555544444443 488899999999999999997654
No 476
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=25.36 E-value=1e+03 Score=26.85 Aligned_cols=42 Identities=24% Similarity=0.309 Sum_probs=17.1
Q ss_pred hHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 025912 46 HLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELR 87 (246)
Q Consensus 46 ~LEe~La~Q~~EiqrLl~dNqRLAatHvaLrQeL~aaq~El~ 87 (246)
.|||-+---..-|+-|-.-=++|-..-.+|+.-++++|.++.
T Consensus 96 llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~k 137 (1265)
T KOG0976|consen 96 LLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKK 137 (1265)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455544333333433333333444444444444444444333
No 477
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=25.26 E-value=5.2e+02 Score=26.58 Aligned_cols=38 Identities=21% Similarity=0.417 Sum_probs=26.1
Q ss_pred hhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 118 LRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGD 155 (246)
Q Consensus 118 lRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqe 155 (246)
|.+-.++.+-+..+.+++.+|...+.++..+++...++
T Consensus 37 L~~f~~v~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~ 74 (618)
T PF06419_consen 37 LKEFSPVNRQLKRLQSDVDKLNSSCDQMQDRLSAAKSE 74 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777777777777777777777777766655444
No 478
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=25.20 E-value=6.4e+02 Score=24.64 Aligned_cols=31 Identities=16% Similarity=0.395 Sum_probs=17.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 122 ESMHAELDRVRADIEKLCVIKQEMIKDLNEI 152 (246)
Q Consensus 122 e~lk~El~Q~r~e~q~L~a~RQELs~qvq~l 152 (246)
+.+++++.++..+++.|...-.++..++..+
T Consensus 72 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 102 (418)
T TIGR00414 72 EEIKKELKELKEELTELSAALKALEAELQDK 102 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666655555555544443
No 479
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=24.96 E-value=1e+03 Score=26.84 Aligned_cols=30 Identities=33% Similarity=0.469 Sum_probs=19.4
Q ss_pred HHHHHHhhhhHHhhhc----hhhHHHHHHHHHHH
Q 025912 105 RELYEKSLKLDAELRV----IESMHAELDRVRAD 134 (246)
Q Consensus 105 ReL~ek~~KmEAelRa----~e~lk~El~Q~r~e 134 (246)
..|.++-.+++..|.. .+.++.|+.|++..
T Consensus 479 ~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~ 512 (1041)
T KOG0243|consen 479 ELLKEEKEKLKSKLQNKNKELESLKEELQQAKAT 512 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566666666654 46777777777776
No 480
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=24.86 E-value=5.2e+02 Score=27.76 Aligned_cols=78 Identities=24% Similarity=0.291 Sum_probs=0.0
Q ss_pred HHHHHHHHhhHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHH
Q 025912 56 SDIQSLLQDNQRLAATHVAL---KQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVR 132 (246)
Q Consensus 56 ~EiqrLl~dNqRLAatHvaL---rQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r 132 (246)
.|+..|+.+|--|-.|--|| |-+|.+-=+||--=+.++..=---.-+---.|-+|+.++|.| ..-+|+|+.-+|
T Consensus 301 rEVeNLilENsqLLetKNALNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEE---lk~~k~ea~~ar 377 (832)
T KOG2077|consen 301 REVENLILENSQLLETKNALNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEE---LKKAKAEAEDAR 377 (832)
T ss_pred HHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q ss_pred HHHH
Q 025912 133 ADIE 136 (246)
Q Consensus 133 ~e~q 136 (246)
-+..
T Consensus 378 ~~~~ 381 (832)
T KOG2077|consen 378 QKAK 381 (832)
T ss_pred Hhhc
No 481
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=24.85 E-value=4.9e+02 Score=25.23 Aligned_cols=61 Identities=20% Similarity=0.349 Sum_probs=29.3
Q ss_pred HhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhh
Q 025912 110 KSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKG 183 (246)
Q Consensus 110 k~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~ 183 (246)
|+++||.+|---.+...|| .+.-.+|-.-++.|+.|+.+.++- |-.|..++..-|.|||++
T Consensus 237 ria~Le~eLAmQKs~seEl----------kssq~eL~dfm~eLdedVEgmqsT---iliLQq~Lketr~~Iq~l 297 (330)
T KOG2991|consen 237 RIAELEIELAMQKSQSEEL----------KSSQEELYDFMEELDEDVEGMQST---ILILQQKLKETRKEIQRL 297 (330)
T ss_pred cHHHHHHHHHHHHhhHHHH----------HHhHHHHHHHHHHHHHHHhcchhh---HHHHHHHHHHHHHHHHHH
Confidence 4556666655444444444 333334444444555555444432 344444444444444443
No 482
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=24.79 E-value=4.2e+02 Score=22.26 Aligned_cols=91 Identities=22% Similarity=0.398 Sum_probs=49.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhhhh---hH--HHHHHHHHHHHHHHhhhhhhhhhccc
Q 025912 122 ESMHAELDRVRADIEKLCVIKQEMIKDLNEIN---GDLAKARDESKD---MA--AIKAEIETERQEIHKGRAAIECEKKN 193 (246)
Q Consensus 122 e~lk~El~Q~r~e~q~L~a~RQELs~qvq~lt---qeL~r~~~d~qq---ip--~l~aEid~lrqElqr~Raa~EyEKK~ 193 (246)
..+=+.++|++..++++...+|-+-++++... .||.++-.|..= +. -++..-+.+..|+..---.+|.
T Consensus 9 q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~Le~---- 84 (119)
T COG1382 9 QAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKETLEL---- 84 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHH----
Confidence 34456677777777777777777766655433 344444444310 10 1223333444443321111111
Q ss_pred ccchhHHHHHHHHhHHHHHHHHHHHHHHH
Q 025912 194 RASNHEQREIMEKNIISVAQQIERLQAEL 222 (246)
Q Consensus 194 ~~e~~Eq~qaMEkNlisMarEvEKLRaEl 222 (246)
..++.++..=..-.++++|+++|
T Consensus 85 ------ri~tLekQe~~l~e~l~eLq~~i 107 (119)
T COG1382 85 ------RIKTLEKQEEKLQERLEELQSEI 107 (119)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777777888888887
No 483
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=24.76 E-value=3.1e+02 Score=22.01 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 126 AELDRVRADIEKLCVIKQEMIKDL 149 (246)
Q Consensus 126 ~El~Q~r~e~q~L~a~RQELs~qv 149 (246)
.++..+..++++|...-+++..++
T Consensus 87 ~~~~~~~~~~~~l~~~~~~~~~~~ 110 (118)
T PF13815_consen 87 ERLQELQQEIEKLKQKLKKQKEEI 110 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 484
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=24.68 E-value=1.1e+03 Score=26.96 Aligned_cols=180 Identities=16% Similarity=0.216 Sum_probs=90.7
Q ss_pred HHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--hhhHHHHHHHHHHHhhhhHHhhhch-hh
Q 025912 47 LEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASV--KAERDAEVRELYEKSLKLDAELRVI-ES 123 (246)
Q Consensus 47 LEe~La~Q~~EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~i--~aE~e~qiReL~ek~~KmEAelRa~-e~ 123 (246)
|+-|...-...|.+++--|.-|-.---.|.-|+..+++|+.......+.= .-+...+.-.+++...+-=++++.- ..
T Consensus 413 Ls~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~ikn 492 (1195)
T KOG4643|consen 413 LSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQIKN 492 (1195)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455666666666666666677777777777777665544433 2222233333333333333333332 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh----hHHHHHHHHHHHHHHHhhhhhhh----hhcccc-
Q 025912 124 MHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKD----MAAIKAEIETERQEIHKGRAAIE----CEKKNR- 194 (246)
Q Consensus 124 lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qq----ip~l~aEid~lrqElqr~Raa~E----yEKK~~- 194 (246)
++.=|.-.--|+-+|.+..-+|-.|.+.+.--+....--..- +--+..|-..|..+|+.+-.++. +|+.-+
T Consensus 493 lnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t~qn~~~LEq~~n~ 572 (1195)
T KOG4643|consen 493 LNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKTTSQNGALLEQNNND 572 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhH
Confidence 333333333344444444444444444433332222211111 23344555566666776665411 222221
Q ss_pred --cchhHHHHHHHHhHHHHHHHHHHHHHHHhhHhh
Q 025912 195 --ASNHEQREIMEKNIISVAQQIERLQAELANAEK 227 (246)
Q Consensus 195 --~e~~Eq~qaMEkNlisMarEvEKLRaElanaEk 227 (246)
..+.|+.|.| +.|.++-++-|||+-++.|-.+
T Consensus 573 lE~~~~elkk~i-daL~alrrhke~LE~e~mnQql 606 (1195)
T KOG4643|consen 573 LELIHNELKKYI-DALNALRRHKEKLEEEIMNQQL 606 (1195)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhh
Confidence 1233444444 5577999999999999877543
No 485
>PRK08026 flagellin; Validated
Probab=24.61 E-value=6e+02 Score=26.20 Aligned_cols=81 Identities=11% Similarity=0.137 Sum_probs=62.1
Q ss_pred HHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hhhhHHHHHHHHHHHHHHHhhhh
Q 025912 109 EKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE---SKDMAAIKAEIETERQEIHKGRA 185 (246)
Q Consensus 109 ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d---~qqip~l~aEid~lrqElqr~Ra 185 (246)
-.+.+|.++++..+....=+....+=+|-=...-++++.-+|.+..=+-++..+ ....-++..||..|.+||.+.=.
T Consensus 49 aia~~l~sqi~~l~qa~rN~~dg~s~lqtAE~aL~~i~d~LqRmrELaVqAaNGT~S~~DR~aiq~Ei~qL~~eI~~ia~ 128 (529)
T PRK08026 49 AIANRFTSNIKGLTQAARNANDGISVAQTTEGALSEINNNLQRVRELTVQAATGTNSQSDLDSIQDEIKSRLDEIDRVSG 128 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467788999999888888888888888888888888888888876655555443 24578899999999999987544
Q ss_pred hhhh
Q 025912 186 AIEC 189 (246)
Q Consensus 186 a~Ey 189 (246)
.-+|
T Consensus 129 ~T~f 132 (529)
T PRK08026 129 QTQF 132 (529)
T ss_pred hcCC
Confidence 3334
No 486
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=24.59 E-value=4.7e+02 Score=22.74 Aligned_cols=48 Identities=13% Similarity=0.297 Sum_probs=37.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 025912 122 ESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAI 169 (246)
Q Consensus 122 e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l 169 (246)
..+.-+|.-.|..-+.|-.-|.+|--.+..+..=+.|+-.=+.||...
T Consensus 87 ~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~vv 134 (159)
T PF05384_consen 87 HELQVRLAMLREREKQLRERRDELERRLRNLEETIERAENLVSQIGVV 134 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556777888888888899999999999888888887777776553
No 487
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=24.35 E-value=2.8e+02 Score=20.10 Aligned_cols=13 Identities=23% Similarity=0.386 Sum_probs=5.8
Q ss_pred HHhhhhHHhhhch
Q 025912 109 EKSLKLDAELRVI 121 (246)
Q Consensus 109 ek~~KmEAelRa~ 121 (246)
+-+..||.|++.+
T Consensus 39 ~~l~qMe~E~~~~ 51 (79)
T PF05008_consen 39 ELLKQMELEVRSL 51 (79)
T ss_dssp HHHHHHHHHHCTS
T ss_pred HHHHHHHHHHHhC
Confidence 3334444444444
No 488
>PF05302 DUF720: Protein of unknown function (DUF720); InterPro: IPR007966 This family consists of several uncharacterised Chlamydia proteins of unknown function.
Probab=24.31 E-value=1.3e+02 Score=25.69 Aligned_cols=40 Identities=33% Similarity=0.396 Sum_probs=34.3
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025912 54 QHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVA 93 (246)
Q Consensus 54 Q~~EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i 93 (246)
-+.+|++.=.-||-.++.+-.+.+||.++++--+......
T Consensus 58 n~~~iq~vQ~sNQ~i~A~Rq~IQ~els~a~q~~Q~~~s~~ 97 (128)
T PF05302_consen 58 NSSEIQAVQTSNQQISANRQLIQQELSAAQQRAQANQSSV 97 (128)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHhh
Confidence 5678999999999999999999999999998766654433
No 489
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=23.97 E-value=3e+02 Score=21.75 Aligned_cols=42 Identities=24% Similarity=0.482 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 025912 125 HAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDM 166 (246)
Q Consensus 125 k~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqi 166 (246)
++-+.|+-+++|.|.+.--.|..+|..+..|.+-++.|+-+-
T Consensus 24 ~aK~dqlss~vq~LnAkv~qLe~dv~a~~~~~qAAk~eaarA 65 (78)
T COG4238 24 NAKIDQLSSDVQTLNAKVDQLENDVNAMRSDVQAAKDEAARA 65 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHH
Confidence 455667777777777777777777777777777777666543
No 490
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=23.86 E-value=5.6e+02 Score=23.35 Aligned_cols=23 Identities=4% Similarity=0.099 Sum_probs=12.3
Q ss_pred hHHHHHHhhHHHHHHHHHhhHHH
Q 025912 46 HLEDRIAIQHSDIQSLLQDNQRL 68 (246)
Q Consensus 46 ~LEe~La~Q~~EiqrLl~dNqRL 68 (246)
-++.++....+.+..+...-+.+
T Consensus 78 ~~~~~l~~~~a~l~~~~~~l~~~ 100 (331)
T PRK03598 78 PYENALMQAKANVSVAQAQLDLM 100 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666566555555544443
No 491
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=23.80 E-value=5.3e+02 Score=23.08 Aligned_cols=37 Identities=22% Similarity=0.289 Sum_probs=21.9
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 025912 58 IQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAA 94 (246)
Q Consensus 58 iqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~ 94 (246)
+..++.....+|..|..+-+.|...-+||..+..-+.
T Consensus 67 ~~~il~~~e~lA~~h~~~a~~L~~~~~eL~~l~~~~e 103 (234)
T cd07652 67 YHSSLEFHEKLADNGLRFAKALNEMSDELSSLAKTVE 103 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666667777777777766555555555444333
No 492
>PLN02939 transferase, transferring glycosyl groups
Probab=23.63 E-value=1.1e+03 Score=26.50 Aligned_cols=103 Identities=21% Similarity=0.336 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 025912 75 LKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQE-MIKDLNEIN 153 (246)
Q Consensus 75 LrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQE-Ls~qvq~lt 153 (246)
||.|-...+.+++.|++.+..+ +|.|-.+..|-....-|++-|+..|. -+.-+..|+-+|...+.| +..+|..|.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (977)
T PLN02939 231 LKEENMLLKDDIQFLKAELIEV-AETEERVFKLEKERSLLDASLRELES---KFIVAQEDVSKLSPLQYDCWWEKVENLQ 306 (977)
T ss_pred HHHHhHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHH---HHHhhhhhhhhccchhHHHHHHHHHHHH
Confidence 3333333333444443333322 35555555555555666666555443 344566777777777666 556666655
Q ss_pred HHHHHHhhh-------hhhhHHHHHHHHHHHHHHH
Q 025912 154 GDLAKARDE-------SKDMAAIKAEIETERQEIH 181 (246)
Q Consensus 154 qeL~r~~~d-------~qqip~l~aEid~lrqElq 181 (246)
-=|.++... .+|--.|+.-+|.|..=|.
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (977)
T PLN02939 307 DLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLK 341 (977)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 555444433 3444444444554444333
No 493
>PF11577 NEMO: NF-kappa-B essential modulator NEMO; InterPro: IPR021063 This entry represents a conserved domain found at the N-terminal of NF-kappa-B essential modulator (NEMO) and optineurin proteins. NEMO is a regulatory protein which is part of the IKK complex along with the catalytic IKKalpha and beta kinases. The IKK complex phosphorylates IkappaB targeting it for degradation which results in the release of NF-kappaB which initiates the inflammatory response, cell proliferation or cell differentiation []. NEMO activates the IKK complex's activity by associating with the unphosphorylated IKK kinase C termini. The core domain of NEMO is a dimer which binds to two fragments of IKK []. ; PDB: 3BRT_B 3BRV_D.
Probab=23.63 E-value=3.3e+02 Score=20.66 Aligned_cols=55 Identities=29% Similarity=0.341 Sum_probs=40.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhh
Q 025912 57 DIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKL 114 (246)
Q Consensus 57 EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~Km 114 (246)
=+++||.+|+-|-. +|||-=.+-++=..-|..--.+++-|++...+-+-+-...+
T Consensus 7 ~l~~LL~EN~~LKe---alrQ~N~~Mker~e~l~~wqe~~~~e~~~~~~kf~Ear~lv 61 (68)
T PF11577_consen 7 QLQELLQENQDLKE---ALRQNNQAMKERFEELLAWQEKQKEEREFLERKFQEARELV 61 (68)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999984 57887777777777788888888888887766554443333
No 494
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=23.41 E-value=5.8e+02 Score=23.38 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=15.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHH
Q 025912 59 QSLLQDNQRLAATHVALKQELSL 81 (246)
Q Consensus 59 qrLl~dNqRLAatHvaLrQeL~a 81 (246)
..+.....++|..|..|.+.|..
T Consensus 70 ~~~~~e~e~~a~~H~~la~~L~~ 92 (269)
T cd07673 70 DVFKTSTEKLANCHLELVRKLQE 92 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777777777777753
No 495
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=23.36 E-value=2.1e+02 Score=26.12 Aligned_cols=39 Identities=10% Similarity=0.235 Sum_probs=29.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKA 159 (246)
Q Consensus 121 ~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~ 159 (246)
++.++.|+..+|+.++.+.-.=+.+..+-..+..||.+.
T Consensus 63 l~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r 101 (263)
T PRK10803 63 LSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSL 101 (263)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777888888888887777777777777777777764
No 496
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=23.34 E-value=4.2e+02 Score=24.68 Aligned_cols=68 Identities=19% Similarity=0.317 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-------------hHHHHHHHHHHHhhhhHHhhhch
Q 025912 55 HSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKA-------------ERDAEVRELYEKSLKLDAELRVI 121 (246)
Q Consensus 55 ~~EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~i~a-------------E~e~qiReL~ek~~KmEAelRa~ 121 (246)
..-|..|...-+.|.++...|..+++.-+..|+.++..-.+... ..|--|+-=-+.+..||++++..
T Consensus 179 ~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~~~~~~~~~~~~~~~~~~~~~~de~I~rEeeEIreLE~k~~~L 258 (259)
T PF08657_consen 179 REKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRSSSDSSSDDEESEESSEDSVDTDEDIRREEEEIRELERKKREL 258 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHhc
Q ss_pred h
Q 025912 122 E 122 (246)
Q Consensus 122 e 122 (246)
+
T Consensus 259 q 259 (259)
T PF08657_consen 259 Q 259 (259)
T ss_pred C
No 497
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=23.30 E-value=7.8e+02 Score=24.81 Aligned_cols=88 Identities=17% Similarity=0.220 Sum_probs=0.0
Q ss_pred hhhhhhhHHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hHHHHH
Q 025912 93 AASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKD-MAAIKA 171 (246)
Q Consensus 93 i~~i~aE~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qq-ip~l~a 171 (246)
+.-++..-|.=-+.|..|. .....=.++..+-.+-.+|...-++|.++-..+++++.++...... ++.|++
T Consensus 4 ~k~ir~n~d~v~~~l~~r~--------~~~~~~~~~~~ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~~~~~l~~ 75 (429)
T COG0172 4 LKLIRENPDAVREKLKKRG--------GDALDVDKLLELDEERRKLLRELEELQAERNELSKEIGRALKRGEDDAEELIA 75 (429)
T ss_pred HHHhhhCHHHHHHHHhhcC--------CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Q ss_pred HHHHHHHHHHhhhhhhh
Q 025912 172 EIETERQEIHKGRAAIE 188 (246)
Q Consensus 172 Eid~lrqElqr~Raa~E 188 (246)
|+..+..++..+-...+
T Consensus 76 e~~~l~~~l~~~e~~~~ 92 (429)
T COG0172 76 EVKELKEKLKELEAALD 92 (429)
T ss_pred HHHHHHHHHHhccHHHH
No 498
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=23.26 E-value=2.7e+02 Score=27.02 Aligned_cols=47 Identities=19% Similarity=0.310 Sum_probs=0.0
Q ss_pred HhHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 45 HHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSS 91 (246)
Q Consensus 45 ~~LEe~La~Q~~EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~ 91 (246)
..+++++..-..+++.|-..|..|......+++++...+.||..++.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (398)
T PTZ00454 18 RDLYEKLKELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQS 64 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 499
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=23.23 E-value=5e+02 Score=22.60 Aligned_cols=113 Identities=19% Similarity=0.260 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHH--------HHHHHHHHHHH
Q 025912 73 VALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRA--------DIEKLCVIKQE 144 (246)
Q Consensus 73 vaLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~--------e~q~L~a~RQE 144 (246)
.+++.=+..=.+.-++|+..+...+.+.+.-..++-+.....|+..-.+.....=+...=+ +...+...|-.
T Consensus 4 ~a~~~~~~rr~R~~~rL~~~L~~~r~al~~~~a~~~~~~a~v~~~~~~l~~~~~ri~~m~~gg~~f~i~~~~~~~~~r~~ 83 (158)
T PF09486_consen 4 SAWRTLIQRRRRRERRLRARLAAQRRALAAAEAELAEQQAEVEAARQRLRAHDARIDAMMTGGAPFSIDEYLALRRYRDV 83 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCccHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhhh
Q 025912 145 MIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIE 188 (246)
Q Consensus 145 Ls~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~E 188 (246)
|..+++.+.++++.++ +.+-.-..+|-..+..|-+.++.+|
T Consensus 84 l~~~~~~~e~~~a~l~---~~l~~~~~~ia~~~raIarn~a~id 124 (158)
T PF09486_consen 84 LEERVRAAEAELAALR---QALRAAEDEIAATRRAIARNDARID 124 (158)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhhHH
No 500
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=23.21 E-value=4e+02 Score=21.50 Aligned_cols=95 Identities=20% Similarity=0.319 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhh----------------hHHhh-----------
Q 025912 66 QRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLK----------------LDAEL----------- 118 (246)
Q Consensus 66 qRLAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~K----------------mEAel----------- 118 (246)
+.|...+-.|++++...+..+..+...+.+++.=. +.++...+ ..+.+
T Consensus 9 ~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~-----e~l~~l~~~~~~~e~lvplg~~~yv~~~v~~~~kV~v~lG 83 (140)
T PRK03947 9 EELAAQLQALQAQIEALQQQLEELQASINELDTAK-----ETLEELKSKGEGKETLVPIGAGSFVKAKVKDKDKVIVSLG 83 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhhcccCCCCeEEEEcCCCcEEEEEecCCCeEEEEcC
Q ss_pred ----------hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 025912 119 ----------RVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKD 165 (246)
Q Consensus 119 ----------Ra~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qq 165 (246)
.|.+-+++-+..+...+.+|...-+++..++..+.+.+.++....+.
T Consensus 84 ~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~ 140 (140)
T PRK03947 84 AGYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQEAAA 140 (140)
T ss_pred CCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Done!