Query 025912
Match_columns 246
No_of_seqs 88 out of 90
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 20:27:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025912.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025912hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 97.3 0.042 1.4E-06 44.0 24.5 7 55-61 12-18 (284)
2 1i84_S Smooth muscle myosin he 96.5 0.0086 2.9E-07 62.3 9.8 42 47-88 862-903 (1184)
3 3ol1_A Vimentin; structural ge 96.3 0.11 3.8E-06 41.2 13.2 88 45-160 16-103 (119)
4 3na7_A HP0958; flagellar bioge 96.3 0.48 1.6E-05 41.1 18.5 115 70-188 32-149 (256)
5 1i84_S Smooth muscle myosin he 96.3 0.013 4.5E-07 60.9 9.7 45 47-91 855-899 (1184)
6 3na7_A HP0958; flagellar bioge 95.8 0.86 2.9E-05 39.5 19.8 133 48-188 24-156 (256)
7 2dfs_A Myosin-5A; myosin-V, in 95.7 0.17 5.9E-06 52.8 14.9 124 58-188 916-1040(1080)
8 3oja_B Anopheles plasmodium-re 94.7 0.27 9.2E-06 45.9 11.4 91 64-158 450-541 (597)
9 3oja_B Anopheles plasmodium-re 94.6 0.11 3.6E-06 48.7 8.4 125 82-226 454-578 (597)
10 3swk_A Vimentin; cytoskeleton, 94.3 0.41 1.4E-05 36.2 9.5 50 111-160 34-83 (86)
11 2dfs_A Myosin-5A; myosin-V, in 93.8 1.5 5.2E-05 45.8 15.9 17 206-222 1023-1039(1080)
12 3ol1_A Vimentin; structural ge 93.1 2.6 9E-05 33.2 13.1 73 112-190 37-109 (119)
13 3m91_A Proteasome-associated A 92.4 0.46 1.6E-05 33.3 6.6 43 48-90 8-50 (51)
14 3vkg_A Dynein heavy chain, cyt 92.0 8.4 0.00029 45.0 19.6 60 169-228 2012-2071(3245)
15 3o0z_A RHO-associated protein 92.0 5.2 0.00018 34.0 16.8 62 98-162 44-112 (168)
16 2v71_A Nuclear distribution pr 91.1 7 0.00024 33.7 16.2 53 47-99 47-103 (189)
17 3vkg_A Dynein heavy chain, cyt 90.6 18 0.00061 42.4 20.4 119 44-162 1905-2050(3245)
18 3i00_A HIP-I, huntingtin-inter 90.4 2 6.9E-05 34.5 9.3 83 96-194 9-102 (120)
19 1wt6_A Myotonin-protein kinase 88.8 1.7 5.9E-05 33.2 7.3 45 111-155 16-60 (81)
20 2fxo_A Myosin heavy chain, car 88.6 7.7 0.00026 30.6 14.7 110 101-216 12-121 (129)
21 1ykh_B RNA polymerase II holoe 88.4 3.2 0.00011 33.4 9.2 72 67-145 54-125 (132)
22 3swk_A Vimentin; cytoskeleton, 88.1 5.5 0.00019 29.9 9.8 67 112-184 17-83 (86)
23 3mq7_A Bone marrow stromal ant 88.1 9.5 0.00033 31.0 11.7 15 75-89 30-44 (121)
24 2no2_A HIP-I, huntingtin-inter 87.8 8.2 0.00028 30.2 11.0 76 121-196 10-86 (107)
25 2v4h_A NF-kappa-B essential mo 87.6 7.1 0.00024 31.3 10.6 79 75-157 29-107 (110)
26 1yke_B RNA polymerase II holoe 87.6 4.7 0.00016 33.3 10.0 78 67-158 54-131 (151)
27 3jsv_C NF-kappa-B essential mo 87.0 4.8 0.00016 31.4 9.1 86 74-163 6-91 (94)
28 3lay_A Zinc resistance-associa 86.0 2.5 8.7E-05 35.7 7.7 40 151-190 100-139 (175)
29 3i00_A HIP-I, huntingtin-inter 85.8 6.7 0.00023 31.4 9.6 58 83-143 21-78 (120)
30 2w83_C C-JUN-amino-terminal ki 85.3 5.6 0.00019 30.1 8.4 69 55-158 8-76 (77)
31 2fxo_A Myosin heavy chain, car 83.9 14 0.00048 29.1 14.8 106 111-222 8-113 (129)
32 3ghg_A Fibrinogen alpha chain; 82.6 9.5 0.00032 37.8 10.9 89 127-222 65-154 (562)
33 3iox_A AGI/II, PA; alpha helix 82.5 39 0.0013 33.1 15.1 76 74-162 6-81 (497)
34 1x79_B RAB GTPase binding effe 82.3 13 0.00045 29.7 9.9 93 121-222 8-100 (112)
35 1x79_B RAB GTPase binding effe 82.1 18 0.0006 28.9 11.6 89 71-165 14-102 (112)
36 2jee_A YIIU; FTSZ, septum, coi 81.9 13 0.00045 28.2 9.3 58 101-161 12-69 (81)
37 4e61_A Protein BIM1; EB1-like 81.1 9.2 0.00031 30.4 8.5 56 118-173 3-58 (106)
38 3tnu_A Keratin, type I cytoske 81.0 19 0.00063 28.4 11.2 85 77-171 31-115 (131)
39 3tnu_B Keratin, type II cytosk 81.0 18 0.00062 28.3 11.9 85 77-171 29-113 (129)
40 3bas_A Myosin heavy chain, str 80.9 15 0.00052 27.4 9.5 63 112-184 10-72 (89)
41 4fla_A Regulation of nuclear P 80.7 21 0.00071 29.4 10.9 63 60-123 29-100 (152)
42 1jcd_A Major outer membrane li 80.0 6 0.00021 27.7 6.3 39 136-184 7-45 (52)
43 1l8d_A DNA double-strand break 78.7 5.9 0.0002 29.8 6.6 44 121-164 5-48 (112)
44 3m9b_A Proteasome-associated A 78.4 2.5 8.5E-05 38.0 4.9 44 48-91 53-96 (251)
45 1joc_A EEA1, early endosomal a 78.3 13 0.00043 29.3 8.6 47 103-152 5-51 (125)
46 3hnw_A Uncharacterized protein 77.4 27 0.00092 28.2 12.4 85 100-184 37-130 (138)
47 4dzn_A Coiled-coil peptide CC- 77.2 3.8 0.00013 26.1 4.2 27 71-97 3-29 (33)
48 3o0z_A RHO-associated protein 76.7 34 0.0012 29.0 15.0 115 92-211 18-137 (168)
49 2jee_A YIIU; FTSZ, septum, coi 74.8 25 0.00086 26.6 9.8 64 44-111 8-78 (81)
50 1go4_E MAD1 (mitotic arrest de 73.7 16 0.00053 28.7 7.8 32 127-158 13-44 (100)
51 1m1j_C Fibrinogen gamma chain; 73.3 40 0.0014 31.9 12.0 109 104-228 25-134 (409)
52 2w6b_A RHO guanine nucleotide 72.9 4.4 0.00015 29.0 4.1 35 162-196 8-42 (56)
53 1uix_A RHO-associated kinase; 72.2 14 0.00049 27.4 6.9 44 131-174 2-45 (71)
54 3plt_A Sphingolipid long chain 71.4 24 0.00082 31.4 9.4 98 98-204 86-183 (234)
55 1jcd_A Major outer membrane li 70.9 8.1 0.00028 27.0 5.0 33 130-162 8-40 (52)
56 1hjb_A Ccaat/enhancer binding 70.6 16 0.00055 27.8 7.1 54 115-168 25-78 (87)
57 2xnx_M M protein, M1-BC1; cell 70.6 45 0.0015 27.8 10.3 62 123-187 70-131 (146)
58 1gu4_A CAAT/enhancer binding p 70.3 16 0.00056 27.2 6.9 54 115-168 25-78 (78)
59 3fpp_A Macrolide-specific effl 67.2 29 0.00099 29.9 8.9 60 125-184 68-127 (341)
60 2w6a_A ARF GTPase-activating p 67.0 20 0.00069 26.1 6.5 43 124-166 18-60 (63)
61 3l4f_A RHO guanine nucleotide 66.7 14 0.00047 26.9 5.6 43 165-214 8-50 (61)
62 2xnx_M M protein, M1-BC1; cell 66.3 9.7 0.00033 31.8 5.4 37 131-167 99-135 (146)
63 3mov_A Lamin-B1; LMNB1, B-type 65.7 25 0.00087 26.8 7.4 79 101-188 11-89 (95)
64 3kqg_A Langerin, C-type lectin 65.1 6 0.0002 31.1 3.9 37 145-181 4-40 (182)
65 3ghg_A Fibrinogen alpha chain; 63.6 1.1E+02 0.0039 30.3 13.1 77 96-188 79-155 (562)
66 2js5_A Uncharacterized protein 63.4 34 0.0012 25.4 7.3 57 127-186 4-60 (71)
67 2no2_A HIP-I, huntingtin-inter 63.3 51 0.0017 25.6 15.1 32 109-140 44-75 (107)
68 2lf0_A Uncharacterized protein 62.2 16 0.00056 29.7 5.9 57 122-190 6-62 (123)
69 1deq_A Fibrinogen (alpha chain 62.1 51 0.0017 31.4 10.1 40 183-222 118-157 (390)
70 2yy0_A C-MYC-binding protein; 62.0 13 0.00045 25.7 4.7 29 121-149 21-49 (53)
71 1wle_A Seryl-tRNA synthetase; 59.9 99 0.0034 29.7 12.0 20 132-151 83-102 (501)
72 3s9g_A Protein hexim1; cyclin 58.5 43 0.0015 26.5 7.6 23 142-164 60-82 (104)
73 2ocy_A RAB guanine nucleotide 58.2 55 0.0019 27.3 8.6 37 107-146 11-47 (154)
74 3tnu_B Keratin, type II cytosk 57.8 65 0.0022 25.1 13.5 51 87-147 60-110 (129)
75 3lay_A Zinc resistance-associa 57.2 76 0.0026 26.6 9.5 59 52-117 70-128 (175)
76 4dk0_A Putative MACA; alpha-ha 57.1 23 0.00079 30.8 6.5 37 124-160 68-104 (369)
77 3csx_A Putative uncharacterize 57.0 38 0.0013 25.7 6.8 58 127-187 16-73 (81)
78 2ke4_A CDC42-interacting prote 56.6 36 0.0012 26.1 6.8 22 205-226 61-82 (98)
79 1wle_A Seryl-tRNA synthetase; 56.6 94 0.0032 29.9 11.2 23 193-215 210-232 (501)
80 1gk4_A Vimentin; intermediate 56.4 56 0.0019 23.9 11.4 25 93-117 17-41 (84)
81 1ci6_A Transcription factor AT 55.8 49 0.0017 23.2 6.9 41 119-159 16-56 (63)
82 2d1l_A Metastasis suppressor p 55.8 1.1E+02 0.0037 27.1 11.3 117 104-222 82-230 (253)
83 3tnu_A Keratin, type I cytoske 54.5 76 0.0026 24.8 12.8 48 90-147 65-112 (131)
84 2qyw_A Vesicle transport throu 54.4 68 0.0023 24.3 9.1 41 107-163 61-101 (102)
85 4emc_A Monopolin complex subun 54.4 37 0.0013 29.4 7.2 48 46-93 10-57 (190)
86 2eqb_B RAB guanine nucleotide 54.1 63 0.0022 25.2 7.8 15 75-89 3-17 (97)
87 1vcs_A Vesicle transport throu 53.4 71 0.0024 24.2 8.8 45 105-165 48-92 (102)
88 3s9g_A Protein hexim1; cyclin 53.2 83 0.0028 24.9 8.6 22 164-185 65-86 (104)
89 2zqm_A Prefoldin beta subunit 53.1 29 0.00098 25.8 5.7 32 58-89 8-39 (117)
90 3okq_A BUD site selection prot 53.1 58 0.002 27.0 7.8 69 131-199 19-89 (141)
91 3bas_A Myosin heavy chain, str 53.0 67 0.0023 23.8 10.3 47 99-148 11-57 (89)
92 1t2k_D Cyclic-AMP-dependent tr 53.0 53 0.0018 22.6 6.9 36 124-159 20-55 (61)
93 3mq9_A Bone marrow stromal ant 52.7 1.3E+02 0.0046 27.1 13.9 27 164-190 443-469 (471)
94 3qne_A Seryl-tRNA synthetase, 52.0 74 0.0025 30.7 9.6 29 124-152 38-66 (485)
95 2v71_A Nuclear distribution pr 51.2 1.2E+02 0.004 26.0 18.0 85 75-165 22-106 (189)
96 1jnm_A Proto-oncogene C-JUN; B 51.2 32 0.0011 23.8 5.3 35 125-159 21-55 (62)
97 3hnw_A Uncharacterized protein 50.9 96 0.0033 24.9 9.7 42 121-162 91-132 (138)
98 3r4h_A Coiled coil helix CC-TE 50.9 20 0.00069 22.9 3.7 24 73-96 5-28 (34)
99 2yy0_A C-MYC-binding protein; 50.7 30 0.001 23.9 4.9 27 134-160 20-46 (53)
100 3mq9_A Bone marrow stromal ant 50.5 1.4E+02 0.0049 26.9 14.4 10 56-65 359-368 (471)
101 1gk4_A Vimentin; intermediate 50.3 72 0.0025 23.3 9.2 62 57-118 2-70 (84)
102 4ad8_A DNA repair protein RECN 50.0 1.6E+02 0.0055 27.3 14.1 14 166-179 311-324 (517)
103 3s4r_A Vimentin; alpha-helix, 48.7 84 0.0029 23.7 9.6 11 172-182 78-88 (93)
104 2dq0_A Seryl-tRNA synthetase; 48.7 79 0.0027 29.8 9.1 26 127-152 39-64 (455)
105 3ibp_A Chromosome partition pr 48.4 1.7E+02 0.0057 27.0 12.2 99 68-171 15-115 (302)
106 1use_A VAsp, vasodilator-stimu 47.9 44 0.0015 22.9 5.3 10 173-182 32-41 (45)
107 2v4h_A NF-kappa-B essential mo 47.4 1.1E+02 0.0036 24.5 11.4 17 50-66 28-44 (110)
108 2ve7_A Kinetochore protein HEC 47.3 25 0.00084 31.7 5.2 42 160-201 181-222 (315)
109 3onj_A T-snare VTI1; helix, HA 47.1 88 0.003 23.4 10.8 42 126-167 48-93 (97)
110 2wt7_A Proto-oncogene protein 46.9 70 0.0024 22.2 6.9 13 172-184 45-57 (63)
111 1x8y_A Lamin A/C; structural p 44.8 91 0.0031 23.0 8.2 24 147-170 42-65 (86)
112 2y39_A Nickel and cobalt resis 44.7 40 0.0014 27.1 5.5 65 44-108 29-97 (118)
113 1gd2_E Transcription factor PA 44.3 59 0.002 23.7 5.9 23 95-117 22-44 (70)
114 3a7o_A Autophagy protein 16; c 44.0 99 0.0034 23.1 7.7 58 61-139 9-66 (75)
115 1s1c_X RHO-associated, coiled- 43.7 71 0.0024 23.6 6.3 30 131-160 4-33 (71)
116 4dk0_A Putative MACA; alpha-ha 43.3 1.4E+02 0.0048 25.8 9.3 14 46-59 67-80 (369)
117 1ses_A Seryl-tRNA synthetase; 43.2 1.6E+02 0.0056 27.3 10.3 25 126-150 35-59 (421)
118 2xdj_A Uncharacterized protein 42.4 56 0.0019 24.4 5.7 29 161-189 17-45 (83)
119 1y1u_A Signal transducer and a 42.4 95 0.0033 30.7 8.9 32 211-242 109-140 (585)
120 3jsv_C NF-kappa-B essential mo 41.9 1.2E+02 0.0041 23.5 9.6 69 98-166 19-87 (94)
121 3s4r_A Vimentin; alpha-helix, 41.2 1.1E+02 0.0038 22.9 8.5 33 126-158 56-88 (93)
122 1fxk_A Prefoldin; archaeal pro 41.2 38 0.0013 24.8 4.6 14 115-128 28-41 (107)
123 2d4x_A Flagellar HOOK-associat 41.1 1.6E+02 0.0054 24.6 9.6 77 110-186 10-89 (248)
124 3sjb_C Golgi to ER traffic pro 41.0 29 0.00099 26.9 4.0 32 157-188 49-80 (93)
125 2dq0_A Seryl-tRNA synthetase; 40.4 99 0.0034 29.2 8.4 32 127-158 32-63 (455)
126 2nrj_A HBL B protein; enteroto 40.3 2E+02 0.0068 26.1 10.1 69 68-136 121-193 (346)
127 3m91_A Proteasome-associated A 39.6 91 0.0031 21.5 6.0 40 57-96 10-49 (51)
128 1fxk_C Protein (prefoldin); ar 38.9 60 0.002 24.9 5.6 44 134-177 2-45 (133)
129 3kqg_A Langerin, C-type lectin 38.5 25 0.00086 27.5 3.4 8 149-156 25-32 (182)
130 3vp9_A General transcriptional 37.9 90 0.0031 24.0 6.3 45 46-93 40-84 (92)
131 2e7s_A RAB guanine nucleotide 37.8 25 0.00086 28.9 3.4 22 124-145 13-34 (135)
132 3lss_A Seryl-tRNA synthetase; 37.8 2.5E+02 0.0084 27.0 10.8 29 126-154 44-72 (484)
133 1ci6_A Transcription factor AT 37.7 1E+02 0.0034 21.6 6.1 40 56-95 23-62 (63)
134 2eqb_B RAB guanine nucleotide 37.4 1.2E+02 0.0042 23.5 7.1 38 123-160 2-39 (97)
135 2b9c_A Striated-muscle alpha t 37.4 98 0.0034 25.2 6.9 87 146-232 2-99 (147)
136 2w83_C C-JUN-amino-terminal ki 37.3 1.3E+02 0.0045 22.6 7.8 41 121-161 11-51 (77)
137 3tul_A Cell invasion protein S 37.1 65 0.0022 27.1 5.8 46 143-188 79-124 (158)
138 2w6b_A RHO guanine nucleotide 36.8 1.1E+02 0.0039 21.7 6.6 40 66-110 6-45 (56)
139 2xv5_A Lamin-A/C; structural p 36.7 1.1E+02 0.0038 22.3 6.4 11 107-117 38-48 (74)
140 3viq_A SWI5-dependent recombin 36.4 83 0.0028 25.0 6.2 61 68-155 5-65 (122)
141 3qne_A Seryl-tRNA synthetase, 36.4 1.2E+02 0.0042 29.1 8.5 19 137-155 44-62 (485)
142 3oa7_A Head morphogenesis prot 36.1 66 0.0022 28.2 5.9 12 199-210 109-120 (206)
143 1gd2_E Transcription factor PA 36.0 55 0.0019 23.8 4.6 15 72-86 52-66 (70)
144 2xv5_A Lamin-A/C; structural p 35.6 1.3E+02 0.0044 22.0 7.3 54 134-190 6-59 (74)
145 2xdj_A Uncharacterized protein 34.7 93 0.0032 23.2 5.8 37 121-157 29-65 (83)
146 3a7p_A Autophagy protein 16; c 34.0 2.1E+02 0.007 23.9 10.9 29 119-147 96-124 (152)
147 2lw1_A ABC transporter ATP-bin 33.6 73 0.0025 23.3 5.1 56 124-183 20-75 (89)
148 1jnm_A Proto-oncogene C-JUN; B 33.5 99 0.0034 21.3 5.5 36 100-138 20-55 (62)
149 3viq_A SWI5-dependent recombin 33.2 42 0.0014 26.8 3.9 36 165-200 8-43 (122)
150 1uii_A Geminin; human, DNA rep 33.0 86 0.0029 23.9 5.4 39 58-96 41-79 (83)
151 2dq3_A Seryl-tRNA synthetase; 32.9 1.5E+02 0.0051 27.5 8.2 32 121-152 70-101 (425)
152 3pwx_A Putative flagellar HOOK 32.4 2.3E+02 0.008 24.0 10.1 78 109-186 11-91 (239)
153 3hhm_B NISH2 P85alpha; PI3KCA, 32.2 3E+02 0.01 25.4 10.0 66 46-132 172-253 (373)
154 4dci_A Uncharacterized protein 32.1 1.6E+02 0.0055 24.3 7.4 80 122-202 24-104 (150)
155 2dgc_A Protein (GCN4); basic d 32.0 1.1E+02 0.0038 21.4 5.6 30 126-155 30-59 (63)
156 2jn6_A Protein CGL2762, transp 31.8 18 0.00062 25.8 1.4 33 166-198 61-93 (97)
157 1gu4_A CAAT/enhancer binding p 31.7 1.5E+02 0.0052 21.8 6.5 33 103-138 37-69 (78)
158 3ni0_A Bone marrow stromal ant 31.5 81 0.0028 24.8 5.1 22 165-186 68-89 (99)
159 1hjb_A Ccaat/enhancer binding 31.0 1.7E+02 0.0058 22.0 7.0 34 104-140 38-71 (87)
160 3fx0_A NF-kappa-B essential mo 30.8 1E+02 0.0035 24.0 5.7 42 148-189 39-80 (96)
161 1m1j_C Fibrinogen gamma chain; 30.4 2.7E+02 0.0093 26.2 9.6 79 146-226 30-118 (409)
162 3ra3_B P2F; coiled coil domain 30.3 37 0.0013 20.9 2.4 24 58-88 2-25 (28)
163 1t3j_A Mitofusin 1; coiled coi 30.2 1.9E+02 0.0065 22.4 7.5 43 91-133 43-85 (96)
164 3fpp_A Macrolide-specific effl 30.2 2.4E+02 0.0082 24.0 8.6 12 46-57 66-77 (341)
165 3ra3_A P1C; coiled coil domain 30.1 22 0.00075 21.9 1.4 23 60-82 4-26 (28)
166 1wlq_A Geminin; coiled-coil; 2 30.1 1.5E+02 0.0053 22.5 6.4 49 57-110 32-80 (83)
167 2v0o_A FCHO2, FCH domain only 29.2 2.4E+02 0.0082 23.2 16.1 20 60-79 77-96 (276)
168 2j69_A Bacterial dynamin-like 28.6 4.2E+02 0.014 25.8 12.0 58 166-223 632-689 (695)
169 3v47_C Flagellin; innate immun 27.8 2E+02 0.0069 27.3 8.3 81 109-189 8-91 (425)
170 1wt6_A Myotonin-protein kinase 27.7 2E+02 0.0068 21.8 7.9 14 132-145 20-33 (81)
171 2ve7_C Kinetochore protein NUF 27.7 52 0.0018 28.8 3.9 64 55-118 140-206 (250)
172 4etp_A Kinesin-like protein KA 27.3 1.8E+02 0.0061 26.9 7.7 48 133-180 10-57 (403)
173 2rjz_A PILO protein; structura 26.1 79 0.0027 25.3 4.5 35 152-186 3-37 (147)
174 2nrj_A HBL B protein; enteroto 26.0 3.7E+02 0.013 24.3 14.1 58 159-222 171-242 (346)
175 2dq3_A Seryl-tRNA synthetase; 26.0 99 0.0034 28.7 5.7 24 128-151 39-62 (425)
176 3m9b_A Proteasome-associated A 25.9 85 0.0029 28.1 5.0 31 128-158 63-93 (251)
177 2vkl_A RV0948C/MT0975; helical 25.5 1.6E+02 0.0053 21.8 5.7 36 120-155 13-48 (90)
178 2py8_A Hypothetical protein RB 25.2 2.1E+02 0.0071 23.7 6.9 60 56-117 55-115 (147)
179 2p2u_A HOST-nuclease inhibitor 25.1 2E+02 0.007 23.5 6.9 29 90-118 40-68 (171)
180 3q8t_A Beclin-1; autophagy, AT 25.0 2.2E+02 0.0076 21.4 12.9 24 196-219 71-94 (96)
181 3oka_C N-terminal His-affinity 24.9 28 0.00095 20.2 1.1 19 5-23 2-20 (21)
182 3q4f_C DNA repair protein XRCC 24.9 59 0.002 28.1 3.6 24 49-72 161-184 (186)
183 3fhn_A Protein transport prote 24.9 3.9E+02 0.014 27.0 10.1 47 127-173 11-57 (706)
184 1m1j_B Fibrinogen beta chain; 24.8 4.7E+02 0.016 25.1 13.5 21 166-186 170-190 (464)
185 2q6q_A Spindle POLE BODY compo 24.6 2.2E+02 0.0075 21.2 6.3 45 74-122 7-51 (74)
186 2wt7_A Proto-oncogene protein 24.4 1.8E+02 0.0061 20.1 7.0 35 125-159 22-56 (63)
187 3htk_A Structural maintenance 24.3 1.6E+02 0.0055 19.6 7.6 20 170-189 39-58 (60)
188 1deq_A Fibrinogen (alpha chain 24.2 4.7E+02 0.016 24.9 13.8 106 57-189 53-159 (390)
189 2v66_B Nuclear distribution pr 23.9 2.7E+02 0.0091 21.9 9.1 89 101-209 2-95 (111)
190 4dyl_A Tyrosine-protein kinase 23.7 4.1E+02 0.014 24.0 10.6 120 13-152 268-392 (406)
191 4b6x_A AVRRPS4, avirulence pro 23.5 2.2E+02 0.0074 21.9 6.1 15 149-163 38-52 (90)
192 2d8d_A Aroag, phospho-2-dehydr 23.4 1.8E+02 0.0063 20.8 5.7 35 121-155 5-39 (90)
193 1lwu_C Fibrinogen gamma chain; 23.3 2.3E+02 0.008 25.8 7.5 15 104-118 7-21 (323)
194 2v0o_A FCHO2, FCH domain only 23.3 3.1E+02 0.011 22.5 14.9 15 212-226 162-176 (276)
195 3u06_A Protein claret segregat 23.1 2.4E+02 0.0083 26.2 7.8 49 46-94 7-55 (412)
196 1t3j_A Mitofusin 1; coiled coi 23.0 2.6E+02 0.009 21.6 7.1 47 89-135 34-80 (96)
197 2zvf_A Alanyl-tRNA synthetase; 22.4 2.5E+02 0.0086 21.9 6.7 32 195-226 28-59 (171)
198 1ses_A Seryl-tRNA synthetase; 22.4 4.6E+02 0.016 24.2 10.1 25 192-216 156-180 (421)
199 3brv_B NF-kappa-B essential mo 22.3 2.4E+02 0.0082 20.8 8.3 50 58-110 10-59 (70)
200 3mov_A Lamin-B1; LMNB1, B-type 22.2 2.6E+02 0.0088 21.1 9.5 19 99-117 34-52 (95)
201 1ucu_A Phase 1 flagellin; flag 22.0 5.1E+02 0.017 24.5 10.7 82 108-189 47-131 (494)
202 1cxz_B Protein (PKN); protein- 22.0 2.6E+02 0.009 21.1 7.7 46 100-145 36-82 (86)
203 1t2k_D Cyclic-AMP-dependent tr 21.8 1.9E+02 0.0067 19.6 7.2 36 100-138 20-55 (61)
204 3vp9_A General transcriptional 21.7 1.9E+02 0.0066 22.2 5.6 39 122-160 17-56 (92)
205 3emo_C HIA (adhesin); transmem 21.7 2.7E+02 0.0094 23.0 7.0 52 192-243 51-105 (162)
206 3ajw_A Flagellar FLIJ protein; 21.7 2.6E+02 0.009 21.0 10.2 41 165-205 75-115 (150)
207 1io1_A Phase 1 flagellin; beta 21.7 4.2E+02 0.014 24.3 9.0 75 115-189 2-79 (398)
208 4etp_A Kinesin-like protein KA 21.6 2.2E+02 0.0074 26.3 7.1 25 126-150 31-55 (403)
209 1m1j_A Fibrinogen alpha subuni 21.6 5.8E+02 0.02 25.0 10.9 43 181-223 114-156 (491)
210 1qvr_A CLPB protein; coiled co 21.5 5.7E+02 0.019 25.2 10.5 25 166-190 432-456 (854)
211 4e61_A Protein BIM1; EB1-like 21.2 3E+02 0.01 21.6 7.3 31 73-103 7-44 (106)
212 2i1j_A Moesin; FERM, coiled-co 21.1 1.5E+02 0.0053 28.6 6.2 33 56-88 278-315 (575)
213 3mtu_E Head morphogenesis prot 21.0 1.2E+02 0.004 22.8 4.2 30 199-228 30-59 (77)
214 3k29_A Putative uncharacterize 20.8 3.9E+02 0.013 22.7 10.0 31 83-113 36-69 (169)
215 1lwu_C Fibrinogen gamma chain; 20.7 2.3E+02 0.0079 25.8 7.0 11 108-118 4-14 (323)
216 1g6u_A Domain swapped dimer; d 20.7 1.6E+02 0.0054 20.0 4.4 16 200-215 28-43 (48)
217 3haj_A Human pacsin2 F-BAR; pa 20.6 5.1E+02 0.017 23.9 18.4 147 58-215 83-247 (486)
218 2qag_C Septin-7; cell cycle, c 20.4 21 0.00073 33.1 0.0 73 105-192 325-397 (418)
219 1go4_E MAD1 (mitotic arrest de 20.4 3E+02 0.01 21.3 8.7 66 121-186 14-90 (100)
220 2v66_B Nuclear distribution pr 20.3 3.2E+02 0.011 21.5 10.2 51 77-127 59-109 (111)
221 2wt7_B Transcription factor MA 20.2 1.8E+02 0.0062 22.1 5.2 37 45-81 51-87 (90)
222 3rmi_A Chorismate mutase prote 20.2 2.1E+02 0.0071 22.0 5.7 35 121-155 14-48 (114)
223 1ecm_A Endo-oxabicyclic transi 20.0 2.2E+02 0.0076 21.1 5.7 35 121-155 7-41 (109)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=97.33 E-value=0.042 Score=44.03 Aligned_cols=7 Identities=14% Similarity=0.121 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 025912 55 HSDIQSL 61 (246)
Q Consensus 55 ~~EiqrL 61 (246)
..+|..+
T Consensus 12 ~~~~~~~ 18 (284)
T 1c1g_A 12 KLDKENA 18 (284)
T ss_dssp HHHHHHH
T ss_pred HHhHHHH
Confidence 3333333
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=96.51 E-value=0.0086 Score=62.30 Aligned_cols=42 Identities=17% Similarity=0.238 Sum_probs=19.0
Q ss_pred HHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 47 LEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRH 88 (246)
Q Consensus 47 LEe~La~Q~~EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~ 88 (246)
|+++|..-...+.++-..-..+-.....|++++..++.+++.
T Consensus 862 L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~ 903 (1184)
T 1i84_S 862 KDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQA 903 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444333334444444455555555544443
No 3
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=96.34 E-value=0.11 Score=41.19 Aligned_cols=88 Identities=15% Similarity=0.304 Sum_probs=65.1
Q ss_pred HhHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchhhH
Q 025912 45 HHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESM 124 (246)
Q Consensus 45 ~~LEe~La~Q~~EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~l 124 (246)
..+|..|..-...|..+..||-+|......++..+..-+. |.|.|+.....+
T Consensus 16 ~~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~----------------------------KyE~E~~~r~~~ 67 (119)
T 3ol1_A 16 DLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE----------------------------KLQEEMLQREEA 67 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------hhHHHHHHHHHH
Confidence 3789999988888988889998887665555443332221 333444444556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025912 125 HAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKAR 160 (246)
Q Consensus 125 k~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~ 160 (246)
.+++.-++.++......|-+|-.+|++|+.||.=.+
T Consensus 68 E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLK 103 (119)
T 3ol1_A 68 ENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLK 103 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888999999999999999999999999987654
No 4
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.30 E-value=0.48 Score=41.14 Aligned_cols=115 Identities=8% Similarity=0.140 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhh---HHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 70 ATHVALKQELSLAEQELRHLSSVAASVKAE---RDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMI 146 (246)
Q Consensus 70 atHvaLrQeL~aaq~El~~l~~~i~~i~aE---~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs 146 (246)
..-..|..++...+..+..+...+.+++.+ .+..+.++-.++.+.+..+.++. =-.|+..+..|+..+....+.|-
T Consensus 32 ~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~-~~kE~~aL~kEie~~~~~i~~lE 110 (256)
T 3na7_A 32 KDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIK-SERELRSLNIEEDIAKERSNQAN 110 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS-SSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333332 46667777777777777775544 23577778888888887777888
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhhh
Q 025912 147 KDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIE 188 (246)
Q Consensus 147 ~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~E 188 (246)
.++..++..+.....+ +-.+.++++.++.++...++.++
T Consensus 111 ~eile~~e~ie~~~~~---l~~~~~~l~~~~~~l~~~~~~~~ 149 (256)
T 3na7_A 111 REIENLQNEIKRKSEK---QEDLKKEMLELEKLALELESLVE 149 (256)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 8777777776665544 33455566666666666555544
No 5
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=96.30 E-value=0.013 Score=60.89 Aligned_cols=45 Identities=18% Similarity=0.203 Sum_probs=23.5
Q ss_pred HHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 47 LEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSS 91 (246)
Q Consensus 47 LEe~La~Q~~EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~ 91 (246)
.+.++.....++..|-..=.++-.....|..++...+.++..+..
T Consensus 855 ~~~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~ 899 (1184)
T 1i84_S 855 QEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQE 899 (1184)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555554444444445555555555555555443
No 6
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.79 E-value=0.86 Score=39.55 Aligned_cols=133 Identities=12% Similarity=0.132 Sum_probs=72.7
Q ss_pred HHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchhhHHHH
Q 025912 48 EDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAE 127 (246)
Q Consensus 48 Ee~La~Q~~EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~lk~E 127 (246)
+.++..-..||..|-.+=..+-+....++.++...+.++..+...|..+++--+..-..+ +.+ + .-|..+++..|
T Consensus 24 ~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l-~~v-~---~~kE~~aL~kE 98 (256)
T 3na7_A 24 EPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKM-SEI-K---SERELRSLNIE 98 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHC-S---SSSHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hcc-C---CHHHHHHHHHH
Confidence 333344445555555555555555555555555555555555555554443222211111 111 1 33445677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhhh
Q 025912 128 LDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIE 188 (246)
Q Consensus 128 l~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~E 188 (246)
+..+..++..|...-.++..++..+..++..+... +-.++++++..+.++...-+.++
T Consensus 99 ie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~---l~~~~~~l~~~~~~~~~~~~e~~ 156 (256)
T 3na7_A 99 EDIAKERSNQANREIENLQNEIKRKSEKQEDLKKE---MLELEKLALELESLVENEVKNIK 156 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777776655543 34455555555555555554444
No 7
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.74 E-value=0.17 Score=52.80 Aligned_cols=124 Identities=9% Similarity=0.119 Sum_probs=34.7
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHH
Q 025912 58 IQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEK 137 (246)
Q Consensus 58 iqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~ 137 (246)
+..|...|..|-..-..|++.|.....+...|...+..+....+.++-+| +.++...+....|+..+...+.+
T Consensus 916 ~~~l~~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L-------~~~l~~le~~~~e~~~~~~~v~~ 988 (1080)
T 2dfs_A 916 VERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKL-------RSDVERLRMSEEEAKNATNRVLS 988 (1080)
T ss_dssp -----------------------------------CHHHHHHHHHHHHHH-------HHTHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666666665555555555555544444444444444 22222222233333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhh-HHHHHHHHHHHHHHHhhhhhhh
Q 025912 138 LCVIKQEMIKDLNEINGDLAKARDESKDM-AAIKAEIETERQEIHKGRAAIE 188 (246)
Q Consensus 138 L~a~RQELs~qvq~ltqeL~r~~~d~qqi-p~l~aEid~lrqElqr~Raa~E 188 (246)
|...=.+|..+++.+++|...+....+++ -.|...+.+|.+|.+.+|..++
T Consensus 989 L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~ 1040 (1080)
T 2dfs_A 989 LQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKE 1040 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333222221 1334455555555555555443
No 8
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.70 E-value=0.27 Score=45.93 Aligned_cols=91 Identities=12% Similarity=0.086 Sum_probs=43.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhh-chhhHHHHHHHHHHHHHHHHHHH
Q 025912 64 DNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELR-VIESMHAELDRVRADIEKLCVIK 142 (246)
Q Consensus 64 dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelR-a~e~lk~El~Q~r~e~q~L~a~R 142 (246)
+|..|-++...++.++...+.++.+....+...+.+-+. ..++......++. ..+-+++++.++..+.+++...-
T Consensus 450 ~~e~l~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 525 (597)
T 3oja_B 450 GNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDT----NLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRET 525 (597)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHH
Confidence 455555555555666666666666555555544444222 1111111111111 12556666666666666666666
Q ss_pred HHHHHHHHHHHHHHHH
Q 025912 143 QEMIKDLNEINGDLAK 158 (246)
Q Consensus 143 QELs~qvq~ltqeL~r 158 (246)
|.+..+++...+++..
T Consensus 526 ~~~~~~~~~~~~~~~~ 541 (597)
T 3oja_B 526 QARRTEADAKQKETED 541 (597)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhcchhh
Confidence 6666655555555443
No 9
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.59 E-value=0.11 Score=48.66 Aligned_cols=125 Identities=14% Similarity=0.096 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025912 82 AEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARD 161 (246)
Q Consensus 82 aq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~ 161 (246)
.++|+..+...+..++.+.+..-+.+-....+++.........+.++. ...++|....+.+..+.+.+..++++.+
T Consensus 454 l~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~- 529 (597)
T 3oja_B 454 LEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLA---RSSDNLNKVFTHLKERQAFKLRETQARR- 529 (597)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSS---CHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccC---CHHHHHHHHHHHHHhhhhhhHHHHHHHH-
Confidence 344444444555555555555444444444444443322221111111 1112333333333333343333333322
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhHh
Q 025912 162 ESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANAE 226 (246)
Q Consensus 162 d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEkNlisMarEvEKLRaElanaE 226 (246)
+++-..+.+++.+++|..+.+..++- |.+.+..+.+|+.++++++..-+
T Consensus 530 --~~~~~~~~~~~~~~~~~~~le~~~~~--------------~~~~~~~l~~e~~~~~~~~~~l~ 578 (597)
T 3oja_B 530 --TEADAKQKETEDLEQENIALEKQLDN--------------KRAKQAELRQETSLKRQKVKQLE 578 (597)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HhhhhhhcchhhHHhhhHHHHHHHhh--------------hhhHHHHHHHHHHHHHHHHHHHH
Confidence 23344555666666666665555544 44444556667777777765544
No 10
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=94.27 E-value=0.41 Score=36.19 Aligned_cols=50 Identities=16% Similarity=0.320 Sum_probs=44.3
Q ss_pred hhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025912 111 SLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKAR 160 (246)
Q Consensus 111 ~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~ 160 (246)
-.|.|.|+.-...+-+|+.-++.++..+.-.|-+|-++|.+|+.||.=++
T Consensus 34 k~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fLk 83 (86)
T 3swk_A 34 REKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLK 83 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45778888888899999999999999999999999999999999987543
No 11
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=93.83 E-value=1.5 Score=45.79 Aligned_cols=17 Identities=18% Similarity=0.165 Sum_probs=6.8
Q ss_pred HhHHHHHHHHHHHHHHH
Q 025912 206 KNIISVAQQIERLQAEL 222 (246)
Q Consensus 206 kNlisMarEvEKLRaEl 222 (246)
..+-+|..|..+||.++
T Consensus 1023 ~kv~~L~~e~~~L~qq~ 1039 (1080)
T 2dfs_A 1023 QLVSELKEQNTLLKTEK 1039 (1080)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333444444444433
No 12
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=93.07 E-value=2.6 Score=33.19 Aligned_cols=73 Identities=16% Similarity=0.262 Sum_probs=49.7
Q ss_pred hhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhh
Q 025912 112 LKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECE 190 (246)
Q Consensus 112 ~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyE 190 (246)
++|+.+ .+.++.++...+.--..-.+.|+.+-..+.++.+++..+.-- --.|...+++|+.||--+|..+|-|
T Consensus 37 a~l~le---ldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~---r~dLE~~iesL~eEl~FLKk~heeE 109 (119)
T 3ol1_A 37 ARVEVE---RDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLA---RLDLERKVESLQEEIAFLKKLHEEE 109 (119)
T ss_dssp HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH---HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555 456666677777766677788999999999998887543221 1235667778888877777666644
No 13
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=92.39 E-value=0.46 Score=33.29 Aligned_cols=43 Identities=26% Similarity=0.282 Sum_probs=38.9
Q ss_pred HHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 48 EDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLS 90 (246)
Q Consensus 48 Ee~La~Q~~EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~ 90 (246)
|+++..-...+..|..-|.+|+++=-.-|++|...+.+|..|.
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~La 50 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999888888888888887763
No 14
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=92.03 E-value=8.4 Score=45.00 Aligned_cols=60 Identities=7% Similarity=0.146 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhHhhh
Q 025912 169 IKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANAEKR 228 (246)
Q Consensus 169 l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEkNlisMarEvEKLRaElanaEkR 228 (246)
+++++..+..++..+.+...-=++.=.+.-+..+.++.++-...+|.++|..++...++|
T Consensus 2012 kr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~k 2071 (3245)
T 3vkg_A 2012 LREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNK 2071 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444432222223334445555555666666666666665555444
No 15
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=91.96 E-value=5.2 Score=34.01 Aligned_cols=62 Identities=11% Similarity=0.199 Sum_probs=39.9
Q ss_pred hhHHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 025912 98 AERDAEVRELYEKSLKLDAELRVIESMHAELDRVRA-------DIEKLCVIKQEMIKDLNEINGDLAKARDE 162 (246)
Q Consensus 98 aE~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~-------e~q~L~a~RQELs~qvq~ltqeL~r~~~d 162 (246)
+--|.-+|+|-++...++.. -+.+-.|+.++++ +-..-...-.||.+++++|..||.+.+.-
T Consensus 44 ~~~E~~~rELq~~~~~L~~~---k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~ 112 (168)
T 3o0z_A 44 SQLESLNRELQERNRILENS---KSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHN 112 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677788888888888876 4555566655555 22222333357777888888877776543
No 16
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=91.06 E-value=7 Score=33.68 Aligned_cols=53 Identities=26% Similarity=0.265 Sum_probs=32.3
Q ss_pred HHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH----HHHHHHhhhhhhhh
Q 025912 47 LEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQE----LRHLSSVAASVKAE 99 (246)
Q Consensus 47 LEe~La~Q~~EiqrLl~dNqRLAatHvaLrQeL~aaq~E----l~~l~~~i~~i~aE 99 (246)
||..|..-..-+..|-..|.+|......+|--+...+.| +..|..-+..++..
T Consensus 47 LE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~ 103 (189)
T 2v71_A 47 LEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAI 103 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555556666777777777777777777666666666 44444444444433
No 17
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=90.64 E-value=18 Score=42.42 Aligned_cols=119 Identities=14% Similarity=0.221 Sum_probs=55.6
Q ss_pred hHhHHHHHHhhHHHHHHHHHhhHHHHHHH---HHHHHHHHHHHHHHHHHH-------HhhhhhhhhH-------------
Q 025912 44 LHHLEDRIAIQHSDIQSLLQDNQRLAATH---VALKQELSLAEQELRHLS-------SVAASVKAER------------- 100 (246)
Q Consensus 44 ~~~LEe~La~Q~~EiqrLl~dNqRLAatH---vaLrQeL~aaq~El~~l~-------~~i~~i~aE~------------- 100 (246)
..+|.+|-..-...+.||-+-=..|..|. -.|+.+|+.-+.+|..-+ ..|..-+.|-
T Consensus 1905 ~~ll~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~~~~~ 1984 (3245)
T 3vkg_A 1905 VLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQ 1984 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666776666666777766666666555 345555555555554322 1111111111
Q ss_pred -HHHHHHHHHHhhhhHHhhhch---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 025912 101 -DAEVRELYEKSLKLDAELRVI---ESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE 162 (246)
Q Consensus 101 -e~qiReL~ek~~KmEAelRa~---e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d 162 (246)
+.+..++-.+-..-|+||... +|+|++|.++..+..+-.+.-++...+++.+...|+.++.+
T Consensus 1985 ~~~~~~ei~~~k~~~e~dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~ 2050 (3245)
T 3vkg_A 1985 LDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEE 2050 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111222223333344455444 35666666666655544444444444444444444444433
No 18
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=90.38 E-value=2 Score=34.47 Aligned_cols=83 Identities=24% Similarity=0.434 Sum_probs=46.7
Q ss_pred hhhhHHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 025912 96 VKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIET 175 (246)
Q Consensus 96 i~aE~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~ 175 (246)
...++|..|..|+ +.++.+|.|+..+..|.+..+. .|.++|..|..||.-.+...|+ ...|.+.
T Consensus 9 ~~d~rD~~Ie~Lk----------reie~lk~ele~l~~E~q~~v~---ql~~~i~~Le~eL~e~r~~~q~---a~~e~e~ 72 (120)
T 3i00_A 9 NKDEKDHLIERLY----------REISGLKAQLENMKTESQRVVL---QLKGHVSELEADLAEQQHLRQQ---AADDCEF 72 (120)
T ss_dssp -CCTHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred CCCcHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 4567776665543 2255666666666666666554 5778888888888877755443 4556667
Q ss_pred HHHHHHhhh-----------hhhhhhcccc
Q 025912 176 ERQEIHKGR-----------AAIECEKKNR 194 (246)
Q Consensus 176 lrqElqr~R-----------aa~EyEKK~~ 194 (246)
||.|+..++ ...|.|+|+.
T Consensus 73 Lr~e~~~l~~~~~~~~~~q~~~~e~E~kAq 102 (120)
T 3i00_A 73 LRAELDELRRQREDTEKAQRSLSEIERKAQ 102 (120)
T ss_dssp HHHHHHHHHTTCC-----------------
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 777776553 3467777764
No 19
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=88.76 E-value=1.7 Score=33.17 Aligned_cols=45 Identities=16% Similarity=0.259 Sum_probs=33.7
Q ss_pred hhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 111 SLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGD 155 (246)
Q Consensus 111 ~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqe 155 (246)
=.-||+||++-..+..||-+++++.+.+.+--+|--.+-+.|..|
T Consensus 16 QSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e 60 (81)
T 1wt6_A 16 QEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAH 60 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346899999999999999999999888876555555444444333
No 20
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=88.65 E-value=7.7 Score=30.65 Aligned_cols=110 Identities=18% Similarity=0.280 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Q 025912 101 DAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEI 180 (246)
Q Consensus 101 e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqEl 180 (246)
+-+|+.+-+.+.+|+..+...+..|.|+..- ..+|...+.+|..++++-+.-++-+..-...+-.-+.+++.--.++
T Consensus 12 e~E~~~~~eel~~lke~l~k~e~~r~ele~~---~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el 88 (129)
T 2fxo_A 12 EKEMASMKEEFTRLKEALEKSEARRKELEEK---MVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEM 88 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555554322 2355555555555555544444444444444444444444433333
Q ss_pred HhhhhhhhhhcccccchhHHHHHHHHhHHHHHHHHH
Q 025912 181 HKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIE 216 (246)
Q Consensus 181 qr~Raa~EyEKK~~~e~~Eq~qaMEkNlisMarEvE 216 (246)
-.-+|-+...+.++....+-|+.++-.+-..++
T Consensus 89 ---~~rleeeee~~~~L~~~kkkle~e~~~Lk~~le 121 (129)
T 2fxo_A 89 ---NKRLEDEEEMNAELTAKKRKLEDECSELKRDID 121 (129)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234444445555555555555444444433333
No 21
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=88.35 E-value=3.2 Score=33.43 Aligned_cols=72 Identities=18% Similarity=0.165 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHH
Q 025912 67 RLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEM 145 (246)
Q Consensus 67 RLAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQEL 145 (246)
-|+++...|-.+|...-+.|..|-..++.+..-.|.| +.++.+|+.|++. +..|+.++-.+..+|...-+++
T Consensus 54 ~f~~~~~ela~dli~k~kqIe~LIdsLP~~~~see~Q----~~ri~~L~~E~~~---~~~el~~~v~e~e~ll~~v~~~ 125 (132)
T 1ykh_B 54 EFSNTIDELSTDIILKTRQINKLIDSLPGVDVSAEEQ----LRKIDMLQKKLVE---VEDEKIEAIKKKEKLMRHVDSM 125 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTCCHHHH----HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHH----HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666778889999999999999999887444443 4456677777443 4455555555555554444333
No 22
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=88.07 E-value=5.5 Score=29.92 Aligned_cols=67 Identities=15% Similarity=0.291 Sum_probs=48.9
Q ss_pred hhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhh
Q 025912 112 LKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGR 184 (246)
Q Consensus 112 ~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~R 184 (246)
.+++.+ .+.++..+...+.--..=...|+.+-+.+.+|.+++--+.-.- -.|.+.|++|+.||.-+|
T Consensus 17 ~~l~~e---~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r---~dLE~kvesL~eEl~fLk 83 (86)
T 3swk_A 17 ARVEVE---RDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLAR---LDLERKVESLQEEIAFLK 83 (86)
T ss_dssp HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH---HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH---HHHHHHHHHHHHHHHHHh
Confidence 466666 5667788888888777778889999999999988876544222 356677888888876554
No 23
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=88.06 E-value=9.5 Score=31.01 Aligned_cols=15 Identities=33% Similarity=0.556 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHH
Q 025912 75 LKQELSLAEQELRHL 89 (246)
Q Consensus 75 LrQeL~aaq~El~~l 89 (246)
|+++|..||+-|+.-
T Consensus 30 Lq~qLTqAQe~l~~~ 44 (121)
T 3mq7_A 30 LQQELTEAQKGFQDV 44 (121)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 677888888777764
No 24
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=87.77 E-value=8.2 Score=30.17 Aligned_cols=76 Identities=17% Similarity=0.267 Sum_probs=52.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccc
Q 025912 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGD-LAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRAS 196 (246)
Q Consensus 121 ~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqe-L~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e 196 (246)
..-+-+.|-..+.....+...+++|..+|+.+..+ ..++...+.+|-.|+.||..=..|++.+..+++-=...+..
T Consensus 10 ~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~ 86 (107)
T 2no2_A 10 NAEVTKQVSMARQAQVDLEREKKELEDSLERISDQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEAN 86 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555556666667777788888888887633 34577788889999999999888888877755543333333
No 25
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=87.65 E-value=7.1 Score=31.27 Aligned_cols=79 Identities=23% Similarity=0.302 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 75 LKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEING 154 (246)
Q Consensus 75 LrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltq 154 (246)
|+..|..|+.=|.-....|..++.+ ..+.++-++.+-=|++. ++..+.+-.-=|++=.++....++|..++..|..
T Consensus 29 L~~~L~~AEeaL~~Kq~~idelk~e-i~q~~~~lE~I~vLkaQ---v~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~ 104 (110)
T 2v4h_A 29 LRQQLQQAEEALVAKQELIDKLKEE-AEQHKIVMETVPVLKAQ---ADIYKADFQAERHAREKLVEKKEYLQEQLEQLQR 104 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH---HHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHH
Confidence 4444555555444444444444442 22244444555555555 5556666666666666666666666666665555
Q ss_pred HHH
Q 025912 155 DLA 157 (246)
Q Consensus 155 eL~ 157 (246)
++.
T Consensus 105 q~~ 107 (110)
T 2v4h_A 105 EFN 107 (110)
T ss_dssp HHT
T ss_pred HHH
Confidence 543
No 26
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=87.59 E-value=4.7 Score=33.31 Aligned_cols=78 Identities=13% Similarity=0.207 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 67 RLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMI 146 (246)
Q Consensus 67 RLAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs 146 (246)
-|+++...|-.+|...-+.|..|-..++.+..-.|.| +.++.+|+.|++. +..|+.++-.+. ..|-
T Consensus 54 ~f~~~~~ela~dli~kakqIe~LIdsLPg~~~seeeQ----~~ri~~Le~E~~~---~~~el~~~v~ea-------e~ll 119 (151)
T 1yke_B 54 EFSNTIDELSTDIILKTRQINKLIDSLPGVDVSAEEQ----LRKIDMLQKKLVE---VEDEKIEAIKKK-------EKLL 119 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTSSSCHHHH----HHHHHHHHHHHHH---HHHHHHHHHHHH-------HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHH----HHHHHHHHHHHHH---HHHHHHHHHHHH-------HHHH
Confidence 4556666677888899999999988888887444443 3456677777443 334444444444 4445
Q ss_pred HHHHHHHHHHHH
Q 025912 147 KDLNEINGDLAK 158 (246)
Q Consensus 147 ~qvq~ltqeL~r 158 (246)
.+|+.+-.+++.
T Consensus 120 ~~v~~~l~~ia~ 131 (151)
T 1yke_B 120 RHVDSLIEDFVD 131 (151)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHHHHH
Confidence 555555555443
No 27
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=87.04 E-value=4.8 Score=31.45 Aligned_cols=86 Identities=21% Similarity=0.269 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 74 ALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEIN 153 (246)
Q Consensus 74 aLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~lt 153 (246)
-|..-|..|..=|......|..++. ...+.+..++.+--|.+. ++..+.+-.-=|++=.++...+++|..++..+.
T Consensus 6 ~L~~~L~~aEeaL~~kq~~id~lke-~~~q~~~~~E~i~vLk~Q---v~IY~~DF~aERadREkl~~eKe~L~~ql~~lq 81 (94)
T 3jsv_C 6 DLRQQLQQAEEALVAKQELIDKLKE-EAEQHKIVMETVPVLKAQ---ADIYKADFQAERHAREKLVEKKEYLQEQLEQLQ 81 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3555666666666665555555554 455666666777777766 566777777777777777777777777777777
Q ss_pred HHHHHHhhhh
Q 025912 154 GDLAKARDES 163 (246)
Q Consensus 154 qeL~r~~~d~ 163 (246)
+++.++.++.
T Consensus 82 ~q~~~L~~~~ 91 (94)
T 3jsv_C 82 REFNKLKVGC 91 (94)
T ss_dssp HTTC------
T ss_pred HHHHHHHHhh
Confidence 7776666543
No 28
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=86.01 E-value=2.5 Score=35.72 Aligned_cols=40 Identities=20% Similarity=0.320 Sum_probs=30.0
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhh
Q 025912 151 EINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECE 190 (246)
Q Consensus 151 ~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyE 190 (246)
.|...+..-..|..+|.+|..||..||+++...|..+..|
T Consensus 100 EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~R~k~~~e 139 (175)
T 3lay_A 100 EYNALLTASSPDTAKINAVAKEMESLGQKLDEQRVKRDVA 139 (175)
T ss_dssp HHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344456788899999999999999999888776554
No 29
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=85.77 E-value=6.7 Score=31.41 Aligned_cols=58 Identities=21% Similarity=0.164 Sum_probs=37.0
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHH
Q 025912 83 EQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQ 143 (246)
Q Consensus 83 q~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQ 143 (246)
+.||.+|...+..++.|.-..|..|-.++..||+||-- -+...+++..|...|.....
T Consensus 21 kreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e---~r~~~q~a~~e~e~Lr~e~~ 78 (120)
T 3i00_A 21 YREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAE---QQHLRQQAADDCEFLRAELD 78 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 34444444445556778888899999999999999543 34445555555555543333
No 30
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=85.33 E-value=5.6 Score=30.12 Aligned_cols=69 Identities=20% Similarity=0.385 Sum_probs=41.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHH
Q 025912 55 HSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRAD 134 (246)
Q Consensus 55 ~~EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e 134 (246)
-.|+..|+.+|..|-+|+-||- .++.+| + .-+|.|-.|-..++.|
T Consensus 8 gkevEnLi~EN~eLl~TKNaLn----vvk~DL---------------------I----------~rvdELt~E~e~l~~E 52 (77)
T 2w83_C 8 GREVENLILENTQLLETKNALN----IVKNDL---------------------I----------AKVDELTCEKDVLQGE 52 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHH---------------------H----------HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH----HHHHHH---------------------H----------HHHHHHHhHHHHHHHH
Confidence 4689999999999999998762 222222 1 1134455555667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 135 IEKLCVIKQEMIKDLNEINGDLAK 158 (246)
Q Consensus 135 ~q~L~a~RQELs~qvq~ltqeL~r 158 (246)
+..+..+++-+..++..+.+||.|
T Consensus 53 l~s~~~~~~r~~~ri~elEeElkr 76 (77)
T 2w83_C 53 LEAVKQAKLKLEEKNRELEEELRK 76 (77)
T ss_dssp HHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 778888888888888888888776
No 31
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=83.95 E-value=14 Score=29.12 Aligned_cols=106 Identities=17% Similarity=0.216 Sum_probs=77.9
Q ss_pred hhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhh
Q 025912 111 SLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECE 190 (246)
Q Consensus 111 ~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyE 190 (246)
+.+-+.+++ .+..++.++.....+-...|++|..+...+.++...++..++.--.+-++.+..+.-++.-+.-+|..
T Consensus 8 ~~~~e~E~~---~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~ 84 (129)
T 2fxo_A 8 SAEREKEMA---SMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAK 84 (129)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 455566644 57789999999999999999999999999999999999999999999999999999888887766654
Q ss_pred cccccchhHHHHHHHHhHHHHHHHHHHHHHHH
Q 025912 191 KKNRASNHEQREIMEKNIISVAQQIERLQAEL 222 (246)
Q Consensus 191 KK~~~e~~Eq~qaMEkNlisMarEvEKLRaEl 222 (246)
=+.-.+.++. .|.-.-.+..+-.||..++
T Consensus 85 l~el~~rlee---eee~~~~L~~~kkkle~e~ 113 (129)
T 2fxo_A 85 VKEMNKRLED---EEEMNAELTAKKRKLEDEC 113 (129)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 4444444443 3333333444444444444
No 32
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=82.59 E-value=9.5 Score=37.79 Aligned_cols=89 Identities=9% Similarity=0.157 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH-HHHHHHHhhhhhhhhhcccccchhHHHHHHH
Q 025912 127 ELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIE-TERQEIHKGRAAIECEKKNRASNHEQREIME 205 (246)
Q Consensus 127 El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid-~lrqElqr~Raa~EyEKK~~~e~~Eq~qaME 205 (246)
=|..++..+..|...+.+--.-++.++..|.+-+...++.-....|+- .|++-|+.++..+ ..++-+.++++
T Consensus 65 rINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekV-------dnQlsnIrvLQ 137 (562)
T 3ghg_A 65 RINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKV-------IEKVQHIQLLQ 137 (562)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 333444444455555555555566666666555555555444555554 5555555554444 35667888999
Q ss_pred HhHHHHHHHHHHHHHHH
Q 025912 206 KNIISVAQQIERLQAEL 222 (246)
Q Consensus 206 kNlisMarEvEKLRaEl 222 (246)
+||-....+|.||--+|
T Consensus 138 snLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 138 KNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999988877
No 33
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=82.46 E-value=39 Score=33.10 Aligned_cols=76 Identities=24% Similarity=0.270 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 74 ALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEIN 153 (246)
Q Consensus 74 aLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~lt 153 (246)
.-+-+|++-|.||-|+...=.+++++-|.-+.+.--+...++|| .+.+|+.=.++.++. -+++..-.
T Consensus 6 ~yq~~la~yq~elarvqkana~aka~Ye~~~ae~~a~n~~i~ae---NeaikkrNa~aka~Y----------e~~l~kY~ 72 (497)
T 3iox_A 6 DYQAKLTAYQTELARVQKANADAKAAYEAAVAANNAANAALTAE---NTAIKKRNADAKADY----------EAKLAKYQ 72 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH----------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH---HHHHHHHHHHHHHHH----------HHHHHHHH
Confidence 45668999999999999999999999999999999998888888 455554433333332 22344455
Q ss_pred HHHHHHhhh
Q 025912 154 GDLAKARDE 162 (246)
Q Consensus 154 qeL~r~~~d 162 (246)
+||++.+.+
T Consensus 73 ~dlakY~~~ 81 (497)
T 3iox_A 73 ADLAKYQKD 81 (497)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 566555555
No 34
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=82.28 E-value=13 Score=29.68 Aligned_cols=93 Identities=17% Similarity=0.246 Sum_probs=62.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccchhHH
Q 025912 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQ 200 (246)
Q Consensus 121 ~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq 200 (246)
.+.+-.++.|++.+..++...|++|....+.-+.| -..||..|..-+.+-.+.|.-+|.+|.-=|. +--+|
T Consensus 8 ~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~------~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~---~vq~q 78 (112)
T 1x79_B 8 VKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSED------SSHQISALVLRAQASEILLEELQQGLSQAKR---DVQEQ 78 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 36677888999999999999999999986655544 3456888888888888888888888864433 34456
Q ss_pred HHHHHHhHHHHHHHHHHHHHHH
Q 025912 201 REIMEKNIISVAQQIERLQAEL 222 (246)
Q Consensus 201 ~qaMEkNlisMarEvEKLRaEl 222 (246)
++.+=..-=.+..|+.+|-+|=
T Consensus 79 L~~Lt~~Re~V~~eL~rLQ~eN 100 (112)
T 1x79_B 79 MAVLMQSREQVSEELVRLQKDN 100 (112)
T ss_dssp HHHHHHHHHHHHTC--------
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 6665555555666666666653
No 35
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=82.10 E-value=18 Score=28.91 Aligned_cols=89 Identities=8% Similarity=0.218 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 71 THVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLN 150 (246)
Q Consensus 71 tHvaLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq 150 (246)
.=+-|+.+|.....+-..|......-+.|.-.+|-+|.+++..-|..|. .|+.-..|+..+++. .-++|+..-.
T Consensus 14 ~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~---~Lqq~fsq~q~~vq~---qL~~Lt~~Re 87 (112)
T 1x79_B 14 MLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLE---ELQQGLSQAKRDVQE---QMAVLMQSRE 87 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 3467788888888888888888888899999999999999999998854 455555555554432 1123333333
Q ss_pred HHHHHHHHHhhhhhh
Q 025912 151 EINGDLAKARDESKD 165 (246)
Q Consensus 151 ~ltqeL~r~~~d~qq 165 (246)
.+..+|.+++.||..
T Consensus 88 ~V~~eL~rLQ~eNd~ 102 (112)
T 1x79_B 88 QVSEELVRLQKDNDS 102 (112)
T ss_dssp HHHTC----------
T ss_pred HHHHHHHHHHhhccc
Confidence 444455555555543
No 36
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=81.90 E-value=13 Score=28.20 Aligned_cols=58 Identities=14% Similarity=0.266 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025912 101 DAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARD 161 (246)
Q Consensus 101 e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~ 161 (246)
|..|...+|.+..|.-+ ++.+|.+-..+-.+++.+.+.|..|..+.+.|.+|.+--+.
T Consensus 12 E~KIq~avdtI~lLqmE---ieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~ 69 (81)
T 2jee_A 12 EAKVQQAIDTITLLQME---IEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQE 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 55667777777777766 56777777777888888888888888888888877655443
No 37
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=81.11 E-value=9.2 Score=30.36 Aligned_cols=56 Identities=13% Similarity=0.141 Sum_probs=44.1
Q ss_pred hhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Q 025912 118 LRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEI 173 (246)
Q Consensus 118 lRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEi 173 (246)
|.++-++.+||.+.+.++..|...-++|...|..|.+|=.=.-+-+..|-.|-.+.
T Consensus 3 ~~s~~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQe~ 58 (106)
T 4e61_A 3 LGSLVAIQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIEILVHTT 58 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778899999999999999999999999999999988665556555554444443
No 38
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=81.02 E-value=19 Score=28.44 Aligned_cols=85 Identities=11% Similarity=0.179 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 77 QELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDL 156 (246)
Q Consensus 77 QeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL 156 (246)
.+|..++.||..++..|.++++|-+. +--....||.-|+..+.- -..+++.+...-.+|-.+++.+..|+
T Consensus 31 ~~l~~~k~Ei~elrr~iq~L~~el~~----l~~~~~sLE~~l~e~e~~------~~~~l~~~q~~i~~lE~eL~~~r~em 100 (131)
T 3tnu_A 31 ELVQSGKSEISELRRTMQNLEIELQS----QLSMKASLENSLEETKGR------YCMQLAQIQEMIGSVEEQLAQLRCEM 100 (131)
T ss_dssp ----------CHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777666665432 333344555555444321 11122233333334555555666666
Q ss_pred HHHhhhhhhhHHHHH
Q 025912 157 AKARDESKDMAAIKA 171 (246)
Q Consensus 157 ~r~~~d~qqip~l~a 171 (246)
++...|-|.+-.+|-
T Consensus 101 ~~ql~EYq~Ll~vKl 115 (131)
T 3tnu_A 101 EQQNQEYKILLDVKT 115 (131)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 666556565555553
No 39
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=80.99 E-value=18 Score=28.34 Aligned_cols=85 Identities=15% Similarity=0.226 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 77 QELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDL 156 (246)
Q Consensus 77 QeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL 156 (246)
.+|..++.||..++..|.++++|-+. +--....||+-|+..+.-- ..+++.+...=.+|-.+++.+..|+
T Consensus 29 ~~l~~~k~Ei~elrr~iq~L~~el~~----l~~~~~~LE~~l~e~e~~~------~~~l~~~q~~i~~lE~eL~~~r~e~ 98 (129)
T 3tnu_B 29 DDLRNTKHEISEMNRMIQRLRAEIDN----VKKQCANLQNAIADAEQRG------ELALKDARNKLAELEEALQKAKQDM 98 (129)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34556677777776666666555432 3333445555554443211 1122222222234445555555555
Q ss_pred HHHhhhhhhhHHHHH
Q 025912 157 AKARDESKDMAAIKA 171 (246)
Q Consensus 157 ~r~~~d~qqip~l~a 171 (246)
++...|-|.+-.+|-
T Consensus 99 ~~ql~EYq~LlnvKl 113 (129)
T 3tnu_B 99 ARLLREYQELMNTKL 113 (129)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555555443
No 40
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=80.91 E-value=15 Score=27.40 Aligned_cols=63 Identities=14% Similarity=0.231 Sum_probs=38.5
Q ss_pred hhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhh
Q 025912 112 LKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGR 184 (246)
Q Consensus 112 ~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~R 184 (246)
.+.|.+++ .+..|+.++.....+....|++|..+...+.++-..+... .+|.+..+..+...+
T Consensus 10 ~~~eeEm~---~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q-------l~eaEe~~~~L~~~K 72 (89)
T 3bas_A 10 ARQEEEMK---EQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS-------MKQLEDKVEELLSKN 72 (89)
T ss_dssp CHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred chhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhHHHHHHHHHHHH
Confidence 34444433 3556777777777777777777777777777776665544 455555555444333
No 41
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=80.73 E-value=21 Score=29.44 Aligned_cols=63 Identities=24% Similarity=0.251 Sum_probs=34.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh---------hHHHHHHHHHHHhhhhHHhhhchhh
Q 025912 60 SLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKA---------ERDAEVRELYEKSLKLDAELRVIES 123 (246)
Q Consensus 60 rLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~i~a---------E~e~qiReL~ek~~KmEAelRa~e~ 123 (246)
++|.|=+-=|.+=.+.||.++.-=-|++-.+ .+.+|+- +=|.-..-|-+-...|++|+.....
T Consensus 29 k~L~~le~sassDa~vrq~Ia~LP~eVsd~s-~l~klkDk~~~e~l~~~veeA~~~L~eYn~rL~~E~~dR~~ 100 (152)
T 4fla_A 29 KALQDLENAASGDATVRQKIASLPQEVQDVS-LLEKITDKEAAERLSKTVDEACLLLAEYNGRLAAELEDRRQ 100 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCGGGTCGG-GGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhccccchHHHHHHHHcCCccccCHH-HHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444434447777888898887655655543 2333332 2233344455555566666555433
No 42
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=80.03 E-value=6 Score=27.69 Aligned_cols=39 Identities=5% Similarity=0.160 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhh
Q 025912 136 EKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGR 184 (246)
Q Consensus 136 q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~R 184 (246)
+.|..-=|.|+.||..|+.|+.- ++.++...+.|-.|+=
T Consensus 7 ~~Lss~V~~L~~kVdqLssdV~a----------l~~~v~~ak~eA~RAN 45 (52)
T 1jcd_A 7 DQASSDAQTANAKADQASNDANA----------ARSDAQAAKDDAARAN 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH
Confidence 34444444455555555554443 4445555555655543
No 43
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=78.75 E-value=5.9 Score=29.78 Aligned_cols=44 Identities=5% Similarity=0.223 Sum_probs=35.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 025912 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESK 164 (246)
Q Consensus 121 ~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~q 164 (246)
++.++.++.+++.++.+|...+-++.+++..+.+.+.-+..+..
T Consensus 5 ~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~g~ 48 (112)
T 1l8d_A 5 LEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKKAKG 48 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 45667788888888888888888888899888888888765433
No 44
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=78.36 E-value=2.5 Score=38.05 Aligned_cols=44 Identities=25% Similarity=0.277 Sum_probs=41.3
Q ss_pred HHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 48 EDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSS 91 (246)
Q Consensus 48 Ee~La~Q~~EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~ 91 (246)
|+++..-..+++.|-..|.+|+++.-.+|+||...+.||.+|..
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 88888889999999999999999999999999999999999864
No 45
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=78.32 E-value=13 Score=29.34 Aligned_cols=47 Identities=23% Similarity=0.384 Sum_probs=35.4
Q ss_pred HHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 103 EVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEI 152 (246)
Q Consensus 103 qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~l 152 (246)
+-|.++++..|-|.| ++.++.++..++.......+.-+||..+.+.+
T Consensus 5 e~~~~~~~~~~~e~e---~~~l~~~~~el~~~l~~~~~~~~e~g~~~~~l 51 (125)
T 1joc_A 5 ERRALLERCLKGEGE---IEKLQTKVLELQRKLDNTTAAVQELGRENQSL 51 (125)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 457899999999998 67888888888887777666666665544443
No 46
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=77.42 E-value=27 Score=28.23 Aligned_cols=85 Identities=19% Similarity=0.275 Sum_probs=56.0
Q ss_pred HHHHHHHHH--HHhhhhHHhhhch---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----hhhHHHH
Q 025912 100 RDAEVRELY--EKSLKLDAELRVI---ESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDES----KDMAAIK 170 (246)
Q Consensus 100 ~e~qiReL~--ek~~KmEAelRa~---e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~----qqip~l~ 170 (246)
=|.+|+++- +....+-.+--++ =.+=.|+.+++.++..|...-+++..++..+..||..++-.. +.+-.++
T Consensus 37 vd~km~ei~~~~~~~~l~~~r~aVLaALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~ 116 (138)
T 3hnw_A 37 INNKITEFNKEESYRRMSAELRTDMMYLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELK 116 (138)
T ss_dssp HHHHHHHHTTCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677777 3366666554444 346778888888888888888888777777777777655332 3455566
Q ss_pred HHHHHHHHHHHhhh
Q 025912 171 AEIETERQEIHKGR 184 (246)
Q Consensus 171 aEid~lrqElqr~R 184 (246)
.+++.|+.++.++=
T Consensus 117 ~~~~~l~~~~~~le 130 (138)
T 3hnw_A 117 SEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666665553
No 47
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=77.19 E-value=3.8 Score=26.15 Aligned_cols=27 Identities=33% Similarity=0.372 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 025912 71 THVALKQELSLAEQELRHLSSVAASVK 97 (246)
Q Consensus 71 tHvaLrQeL~aaq~El~~l~~~i~~i~ 97 (246)
...+|+||+++.+.|+-.|.--|+.++
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888888888887776666554
No 48
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=76.66 E-value=34 Score=29.02 Aligned_cols=115 Identities=14% Similarity=0.131 Sum_probs=79.0
Q ss_pred hhhhhhhhHHHHHHHHHHHhhhhHHhhhch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 025912 92 VAASVKAERDAEVRELYEKSLKLDAELRVI-ESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIK 170 (246)
Q Consensus 92 ~i~~i~aE~e~qiReL~ek~~KmEAelRa~-e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~ 170 (246)
+-..+++|.|. ..|..|.-+|++.. -.+-.-+.-+..-+..|...|-.|-.++..|.-.|..-+.+-.+...+.
T Consensus 18 ~n~kLk~EsE~-----~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~ 92 (168)
T 3o0z_A 18 ANDLLRTESDT-----AVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMI 92 (168)
T ss_dssp HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777765 56778888888743 4444444445666778889999999999999888888888888866655
Q ss_pred H----HHHHHHHHHHhhhhhhhhhcccccchhHHHHHHHHhHHHH
Q 025912 171 A----EIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISV 211 (246)
Q Consensus 171 a----Eid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEkNlisM 211 (246)
+ =|.+|+.|+.+.|....-=.-.+-.+.|-.-.+||---+|
T Consensus 93 ~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~ 137 (168)
T 3o0z_A 93 GDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNL 137 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5 5667888998888765544444444555555666644433
No 49
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=74.83 E-value=25 Score=26.62 Aligned_cols=64 Identities=17% Similarity=0.253 Sum_probs=40.8
Q ss_pred hHhHHHHHHhhHH-------HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHh
Q 025912 44 LHHLEDRIAIQHS-------DIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKS 111 (246)
Q Consensus 44 ~~~LEe~La~Q~~-------EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~ 111 (246)
.+-||.||..--. ||..|=..|..|+...-.++..-..-.+|..+|..-.. --.-.+|.|+.|+
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~----~wq~Rl~~LLgk~ 78 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQN----GWQERLQALLGRM 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH----HHHHHHHHHHHhh
Confidence 3456666654444 77778888888777777766655555566666544433 2456788888874
No 50
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=73.70 E-value=16 Score=28.70 Aligned_cols=32 Identities=19% Similarity=0.323 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 127 ELDRVRADIEKLCVIKQEMIKDLNEINGDLAK 158 (246)
Q Consensus 127 El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r 158 (246)
++.-++.+|..|...+..|..++..|.-+|.+
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555666666655555555555
No 51
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=73.27 E-value=40 Score=31.87 Aligned_cols=109 Identities=16% Similarity=0.187 Sum_probs=58.8
Q ss_pred HHHHHHHhhh-hHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHh
Q 025912 104 VRELYEKSLK-LDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHK 182 (246)
Q Consensus 104 iReL~ek~~K-mEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr 182 (246)
|.+.+.|-.+ +.-+|+-+|.+-.||.++.++++.|...-|+.-.+- ++-..++ +-..-.-...|..|+.+
T Consensus 25 i~d~L~k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~~~~~-------Q~~~~d~--~e~~tq~skkml~~~~~ 95 (409)
T 1m1j_C 25 IADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTIYPSE-------KQTLPQS--IEQLTQKSKKIIEEIIR 95 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSS-------TTCCSSC--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-------cCCCCCc--hhhHHHHHHHHHHHHHH
Confidence 3444555544 677888888888999999999998888888773321 0000110 00011122233334333
Q ss_pred hhhhhhhhcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhHhhh
Q 025912 183 GRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANAEKR 228 (246)
Q Consensus 183 ~Raa~EyEKK~~~e~~Eq~qaMEkNlisMarEvEKLRaElanaEkR 228 (246)
.-+. -...-++.+.|+.-+-+....|+.|...+..-+.+
T Consensus 96 ~e~~-------~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~~ 134 (409)
T 1m1j_C 96 YENT-------ILAHENTIQQLTDMHIMNSNKITQLKQKIAQLESH 134 (409)
T ss_dssp THHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHH-------hcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3211 11122455556666666666777777766555543
No 52
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=72.91 E-value=4.4 Score=29.01 Aligned_cols=35 Identities=26% Similarity=0.348 Sum_probs=29.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccc
Q 025912 162 ESKDMAAIKAEIETERQEIHKGRAAIECEKKNRAS 196 (246)
Q Consensus 162 d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e 196 (246)
=+.-+=+|+.|+..|+||..+...++|-|.|++-+
T Consensus 8 lVDtVYaLkDqV~eL~qe~k~m~k~lEeEqkARk~ 42 (56)
T 2w6b_A 8 LVDTVYALKDEVQELRQDNKKMKKSLEEEQRARKD 42 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457789999999999999999999999988543
No 53
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=72.24 E-value=14 Score=27.41 Aligned_cols=44 Identities=34% Similarity=0.474 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Q 025912 131 VRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIE 174 (246)
Q Consensus 131 ~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid 174 (246)
+..++..|.....||..++..+.+|+.+...+-+.+..+++.++
T Consensus 2 ~~k~v~~l~~E~eel~~klk~~~ee~~~~~eee~~~~~~k~~le 45 (71)
T 1uix_A 2 STSDVANLANEKEELNNKLKEAQEQLSRLKDEEISAAAIKAQFE 45 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688899999999999999999999998866666666665543
No 54
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=71.44 E-value=24 Score=31.35 Aligned_cols=98 Identities=13% Similarity=0.191 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q 025912 98 AERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETER 177 (246)
Q Consensus 98 aE~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lr 177 (246)
+.+--++|..+--++..|.. +.|.|.--..+..+|.+|..-..+ +.++..|.+||.|+.+++ -.--|.|.++.
T Consensus 86 a~~~d~yR~~LK~IR~~E~s---vqp~R~~R~~l~~~I~kLk~k~P~-s~kl~~LeqELvraEae~---lvaEAqL~n~k 158 (234)
T 3plt_A 86 IDKYDQYRVTLKSIRNIEAS---VQPSRDRKEKITDEIAHLKYKDPQ-STKIPVLEQELVRAEAES---LVAEAQLSNIT 158 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHhccCCC-CchHHHHHHHHHHHHHHh---hHHHHHHHHhH
Q ss_pred HHHHhhhhhhhhhcccccchhHHHHHH
Q 025912 178 QEIHKGRAAIECEKKNRASNHEQREIM 204 (246)
Q Consensus 178 qElqr~Raa~EyEKK~~~e~~Eq~qaM 204 (246)
. +..|.+|.+.=.+-.|.-|-+-.+
T Consensus 159 R--~~lKEa~~~~f~Al~E~aEK~~il 183 (234)
T 3plt_A 159 R--EKLKAAYSYMFDSLRELSEKFALI 183 (234)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHH
No 55
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=70.88 E-value=8.1 Score=27.01 Aligned_cols=33 Identities=18% Similarity=0.267 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 025912 130 RVRADIEKLCVIKQEMIKDLNEINGDLAKARDE 162 (246)
Q Consensus 130 Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d 162 (246)
|+-.+|+.|..-=..|+.+|..+..|++.++.|
T Consensus 8 ~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~e 40 (52)
T 1jcd_A 8 QASSDAQTANAKADQASNDANAARSDAQAAKDD 40 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444333
No 56
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=70.65 E-value=16 Score=27.77 Aligned_cols=54 Identities=11% Similarity=0.144 Sum_probs=40.0
Q ss_pred HHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHH
Q 025912 115 DAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAA 168 (246)
Q Consensus 115 EAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~ 168 (246)
+|==|+.+.=|.--.+....+..|...-..|-.+|+.|++|+..++.-..++|.
T Consensus 25 ~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~ 78 (87)
T 1hjb_A 25 IAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPE 78 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcH
Confidence 455566666666667777788888888888888888888888888888877775
No 57
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=70.57 E-value=45 Score=27.82 Aligned_cols=62 Identities=15% Similarity=0.154 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhh
Q 025912 123 SMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAI 187 (246)
Q Consensus 123 ~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~ 187 (246)
.++.++.-.|...+++.+.-+.|+++...++.|++++..++|-.-+. ..+|+.+|.-.|.+-
T Consensus 70 ~l~rdleasr~akk~~ea~la~l~~~~~~LeAE~aKLeEekQIseAS---RqgLrRDLeASReAK 131 (146)
T 2xnx_M 70 AITREQEINRNLLGNAKLELDQLSSEKEQLTIEKAKLEEEKQISDAS---RQSLRRDLDASREAK 131 (146)
T ss_dssp THHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTC---------------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHH
Confidence 34455555555555555555566666777788888887777754444 478888888888774
No 58
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=70.27 E-value=16 Score=27.16 Aligned_cols=54 Identities=11% Similarity=0.144 Sum_probs=40.4
Q ss_pred HHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHH
Q 025912 115 DAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAA 168 (246)
Q Consensus 115 EAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~ 168 (246)
+|==|+.+.=|.--......+..|...-..|..+|+.|++|+..++.=.-|+|.
T Consensus 25 ~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~q~p~ 78 (78)
T 1gu4_A 25 IAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPE 78 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 555566667777777788888888888888999999999999888887777773
No 59
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=67.15 E-value=29 Score=29.87 Aligned_cols=60 Identities=12% Similarity=0.200 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhh
Q 025912 125 HAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGR 184 (246)
Q Consensus 125 k~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~R 184 (246)
..++.++.+++..+.+.-....+++.....++.|.+.-.++--.-+.++|..+.++..++
T Consensus 68 ~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~~~ 127 (341)
T 3fpp_A 68 ENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDNAATEMAVKQ 127 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSSSTTHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHH
Confidence 344444444444443333333333444444444443333332223344444444444333
No 60
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=66.98 E-value=20 Score=26.07 Aligned_cols=43 Identities=14% Similarity=0.366 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 025912 124 MHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDM 166 (246)
Q Consensus 124 lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqi 166 (246)
+|+-|.-.-+-||.|..+-.-|+.++.-|.++|+++++++-++
T Consensus 18 vK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~L 60 (63)
T 2w6a_A 18 LKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhh
Confidence 5666766777888898888889888888888888888887654
No 61
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=66.71 E-value=14 Score=26.87 Aligned_cols=43 Identities=28% Similarity=0.380 Sum_probs=36.0
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhhhhcccccchhHHHHHHHHhHHHHHHH
Q 025912 165 DMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQ 214 (246)
Q Consensus 165 qip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEkNlisMarE 214 (246)
-+=+|+.|+..|++|.+....++|+|.++ ++.+||++-.|.+.
T Consensus 8 tVYalkDev~eLk~e~k~~k~~le~eqra-------Rk~LE~~vrk~~k~ 50 (61)
T 3l4f_A 8 TVYALKDEVQELRQDNKKMKKSLEEEQRA-------RKDLEKLVRKVLKN 50 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhh
Confidence 45689999999999999999999999774 67788887777654
No 62
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=66.26 E-value=9.7 Score=31.82 Aligned_cols=37 Identities=22% Similarity=0.202 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH
Q 025912 131 VRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMA 167 (246)
Q Consensus 131 ~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip 167 (246)
+.+|.++|....|-+-+--++++.||.-.+...+++-
T Consensus 99 LeAE~aKLeEekQIseASRqgLrRDLeASReAKKqlE 135 (146)
T 2xnx_M 99 LTIEKAKLEEEKQISDASRQSLRRDLDASREAKKQVE 135 (146)
T ss_dssp HHHHHHHHGGGTTTC----------------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344433333333344566666666666555543
No 63
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=65.72 E-value=25 Score=26.81 Aligned_cols=79 Identities=11% Similarity=0.169 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Q 025912 101 DAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEI 180 (246)
Q Consensus 101 e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqEl 180 (246)
|.++-.|=-+...||..|+.++. +.-.++..+...-..|.++++.+..|+++...+-|.+..+|.-+| .||
T Consensus 11 ~~~~~~Lq~~~~~LE~~l~e~E~------~~~~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le---~EI 81 (95)
T 3mov_A 11 ENLYFQGQKESRACLERIQELED------LLAKEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALD---MEI 81 (95)
T ss_dssp -------CCCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 33444444444555655555543 122333444444445666666666666666666666666665444 344
Q ss_pred Hhhhhhhh
Q 025912 181 HKGRAAIE 188 (246)
Q Consensus 181 qr~Raa~E 188 (246)
---|.-+|
T Consensus 82 atYrkLLE 89 (95)
T 3mov_A 82 SAYRKLLE 89 (95)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHc
Confidence 44444443
No 64
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=65.13 E-value=6 Score=31.13 Aligned_cols=37 Identities=19% Similarity=0.349 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 025912 145 MIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIH 181 (246)
Q Consensus 145 Ls~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElq 181 (246)
|+++|+.|.+||.....=..+|-.|+.+|+.+++.+.
T Consensus 4 l~~~~~~l~~~~~~~~~l~~~~~~l~~~l~~~~~~l~ 40 (182)
T 3kqg_A 4 LNAQIPELKSDLEKASALNTKIRALQGSLENMSKLLK 40 (182)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666665555444455555555555555443
No 65
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=63.55 E-value=1.1e+02 Score=30.28 Aligned_cols=77 Identities=3% Similarity=0.096 Sum_probs=44.2
Q ss_pred hhhhHHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 025912 96 VKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIET 175 (246)
Q Consensus 96 i~aE~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~ 175 (246)
-..+.+.+++.+++...+=-......+....|+ -.||--+++-|..+| ...+++|-+|+.=|++
T Consensus 79 nsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~-------------S~ELRRrIqyLKekV---dnQlsnIrvLQsnLed 142 (562)
T 3ghg_A 79 NNKDSHSLTTNIMEILRGDFSSANNRDNTYNRV-------------SEDLRSRIEVLKRKV---IEKVQHIQLLQKNVRA 142 (562)
T ss_dssp HHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHT-------------THHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred hchhHHHHHHHHHHHHHHHHHhhhccchhHHHH-------------HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 445667777777665433222222222222222 234444445554443 3444788899999999
Q ss_pred HHHHHHhhhhhhh
Q 025912 176 ERQEIHKGRAAIE 188 (246)
Q Consensus 176 lrqElqr~Raa~E 188 (246)
++.+|||+=.+|+
T Consensus 143 q~~kIQRLEvDId 155 (562)
T 3ghg_A 143 QLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999876654
No 66
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=63.38 E-value=34 Score=25.40 Aligned_cols=57 Identities=12% Similarity=0.216 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhh
Q 025912 127 ELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAA 186 (246)
Q Consensus 127 El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa 186 (246)
|+.-+..+|+||.+.=-+...++..|..| +-.+-++||.+-.+.-...+++..+|..
T Consensus 4 di~eLkkevkKL~~~A~q~kmdLHDLaEd---LP~~w~~i~~vA~~tyda~~~l~~ak~~ 60 (71)
T 2js5_A 4 GAEELKAKLKKLNAQATALKMDLHDLAED---LPTGWNRIMEVAEKTYEAYRQLDEFRKS 60 (71)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHS---TTTSGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHhcc---chhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556778888888888999999999998 7888999999888777777777766654
No 67
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=63.30 E-value=51 Score=25.62 Aligned_cols=32 Identities=25% Similarity=0.350 Sum_probs=19.6
Q ss_pred HHhhhhHHhhhchhhHHHHHHHHHHHHHHHHH
Q 025912 109 EKSLKLDAELRVIESMHAELDRVRADIEKLCV 140 (246)
Q Consensus 109 ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a 140 (246)
+-..|++.+.-.++.++.||..-..|++.|..
T Consensus 44 ~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~ 75 (107)
T 2no2_A 44 QGQRKTQEQLEVLESLKQELATSQRELQVLQG 75 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666666666777776666666665444
No 68
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=62.17 E-value=16 Score=29.68 Aligned_cols=57 Identities=19% Similarity=0.236 Sum_probs=41.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhh
Q 025912 122 ESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECE 190 (246)
Q Consensus 122 e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyE 190 (246)
|.+|+|+++++- +|...|--|.+ ...++|.--|..+..|++.|-.||.+++..-.|+
T Consensus 6 e~~K~Eiq~L~d---rLD~~~rKlaa---------a~~rgd~~~i~qf~~E~~~l~k~I~~lk~~q~~~ 62 (123)
T 2lf0_A 6 EVEKNEIKRLSD---RLDAIRHQQAD---------LSLVEAADKYAELEKEKATLEAEIARLREVHSQK 62 (123)
T ss_dssp CSHHHHHHHHHH---HHHHHHHHHHH---------SCTTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHH---------HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445777766665 44444444433 3467888889999999999999999999876665
No 69
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=62.05 E-value=51 Score=31.39 Aligned_cols=40 Identities=18% Similarity=0.338 Sum_probs=26.6
Q ss_pred hhhhhhhhcccccchhHHHHHHHHhHHHHHHHHHHHHHHH
Q 025912 183 GRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAEL 222 (246)
Q Consensus 183 ~Raa~EyEKK~~~e~~Eq~qaMEkNlisMarEvEKLRaEl 222 (246)
+|.-|+|=|+.-.+++-++++|++||...-.+|.||--.|
T Consensus 118 Le~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 118 LRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555666677777777777777777776666
No 70
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=62.03 E-value=13 Score=25.73 Aligned_cols=29 Identities=21% Similarity=0.337 Sum_probs=16.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 121 IESMHAELDRVRADIEKLCVIKQEMIKDL 149 (246)
Q Consensus 121 ~e~lk~El~Q~r~e~q~L~a~RQELs~qv 149 (246)
+|.||.|+..++..+..|...-+||.+++
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666555555555555555555443
No 71
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=59.93 E-value=99 Score=29.73 Aligned_cols=20 Identities=20% Similarity=0.258 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 025912 132 RADIEKLCVIKQEMIKDLNE 151 (246)
Q Consensus 132 r~e~q~L~a~RQELs~qvq~ 151 (246)
..+++.|.+.|..++.+|..
T Consensus 83 ~~~~~~l~~~rn~~sk~i~~ 102 (501)
T 1wle_A 83 REQIRSLEEEKEAVTEAVRA 102 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 72
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=58.46 E-value=43 Score=26.50 Aligned_cols=23 Identities=17% Similarity=0.291 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhh
Q 025912 142 KQEMIKDLNEINGDLAKARDESK 164 (246)
Q Consensus 142 RQELs~qvq~ltqeL~r~~~d~q 164 (246)
.+...++|+.|..+|.|++.++|
T Consensus 60 ~~~~~~~v~eLe~everL~~ENq 82 (104)
T 3s9g_A 60 SKRLDARVRELELELDRLRAENL 82 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccchhhHHHHHHHHHHHHHHHH
Confidence 34444555555444444444443
No 73
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=58.19 E-value=55 Score=27.28 Aligned_cols=37 Identities=19% Similarity=0.264 Sum_probs=23.3
Q ss_pred HHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 107 LYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMI 146 (246)
Q Consensus 107 L~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs 146 (246)
-|++..-||-+| -..|.++...+.-++.|...|.++.
T Consensus 11 Ain~qs~LeD~L---~~~R~el~~~~~ri~~lE~~r~~~~ 47 (154)
T 2ocy_A 11 SVDKQSHLEEQL---NKSLKTIASQKAAIENYNQLKEDYN 47 (154)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHhhccHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666663 3456777777777777776666544
No 74
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=57.76 E-value=65 Score=25.10 Aligned_cols=51 Identities=18% Similarity=0.335 Sum_probs=27.5
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 87 RHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIK 147 (246)
Q Consensus 87 ~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~ 147 (246)
..|-..+.++..-.+.++..+=.++..||++ |.+++.|+......-|+|..
T Consensus 60 ~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~e----------L~~~r~e~~~ql~EYq~Lln 110 (129)
T 3tnu_B 60 ANLQNAIADAEQRGELALKDARNKLAELEEA----------LQKAKQDMARLLREYQELMN 110 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------HHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555556666666666666555 45555555555555555544
No 75
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=57.21 E-value=76 Score=26.61 Aligned_cols=59 Identities=20% Similarity=0.226 Sum_probs=38.3
Q ss_pred HhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHh
Q 025912 52 AIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAE 117 (246)
Q Consensus 52 a~Q~~EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAe 117 (246)
..|...|+.|..+.+. ....||+++.+.+.||+.|... ++ =.+..|+.|.+++.++-++
T Consensus 70 ~EQq~ql~~I~~e~r~---~~~~Lr~ql~akr~EL~aL~~a-~~---~DeakI~aL~~Ei~~Lr~q 128 (175)
T 3lay_A 70 TEQQATAQKIYDDYYT---QTSALRQQLISKRYEYNALLTA-SS---PDTAKINAVAKEMESLGQK 128 (175)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHTS-SS---CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhC-CC---CCHHHHHHHHHHHHHHHHH
Confidence 3588888888877654 4667899999999998887442 11 1334555555555544444
No 76
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=57.11 E-value=23 Score=30.77 Aligned_cols=37 Identities=5% Similarity=-0.029 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025912 124 MHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKAR 160 (246)
Q Consensus 124 lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~ 160 (246)
+..++.++++++..+.+......+++....+++.|.+
T Consensus 68 ~~~~l~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~ 104 (369)
T 4dk0_A 68 QINTLNTRKAALASYQAQLVARKTAYDVALSNYQRLS 104 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555444443333333333333333444433
No 77
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=57.01 E-value=38 Score=25.71 Aligned_cols=58 Identities=10% Similarity=0.192 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhh
Q 025912 127 ELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAI 187 (246)
Q Consensus 127 El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~ 187 (246)
|+.-+..+|+||.+.=-++..+++.|..| +-.+-++||.+-.+.-....++..+|..+
T Consensus 16 di~eLkkevkKL~~~A~q~kmdLHDLaEd---LP~~w~~i~~vA~~tyda~~~l~~ak~~L 73 (81)
T 3csx_A 16 AVADLKKKVRKLNSKAGQMKMDLHDLAEG---LPTDYENLVETAEKTYEIFRELDQLKKKL 73 (81)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHH---TTTTGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456777788888888899999999999 78889999998887777777777766544
No 78
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=56.61 E-value=36 Score=26.14 Aligned_cols=22 Identities=36% Similarity=0.468 Sum_probs=15.8
Q ss_pred HHhHHHHHHHHHHHHHHHhhHh
Q 025912 205 EKNIISVAQQIERLQAELANAE 226 (246)
Q Consensus 205 EkNlisMarEvEKLRaElanaE 226 (246)
+.-|..++..|++|++++-+..
T Consensus 61 ~~~L~e~~~kid~L~~el~K~q 82 (98)
T 2ke4_A 61 EPQIAETLSNIERLKLEVQKYE 82 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777888888888875544
No 79
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=56.59 E-value=94 Score=29.89 Aligned_cols=23 Identities=0% Similarity=0.066 Sum_probs=15.0
Q ss_pred cccchhHHHHHHHHhHHHHHHHH
Q 025912 193 NRASNHEQREIMEKNIISVAQQI 215 (246)
Q Consensus 193 ~~~e~~Eq~qaMEkNlisMarEv 215 (246)
+..-.+-.+-.++..|+..+++.
T Consensus 210 g~~~l~p~GarL~~aL~~~~~d~ 232 (501)
T 1wle_A 210 RSYYLRGAGALLQHGLVNFTLNK 232 (501)
T ss_dssp TCCEEETHHHHHHHHHHHHHHHH
T ss_pred ceEEEcChHHHHHHHHHHHHHHH
Confidence 34445566677777777777654
No 80
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=56.43 E-value=56 Score=23.94 Aligned_cols=25 Identities=12% Similarity=0.122 Sum_probs=10.9
Q ss_pred hhhhhhhHHHHHHHHHHHhhhhHHh
Q 025912 93 AASVKAERDAEVRELYEKSLKLDAE 117 (246)
Q Consensus 93 i~~i~aE~e~qiReL~ek~~KmEAe 117 (246)
+.++..--+.++..+=.++..+|++
T Consensus 17 l~e~e~~~~~~~~~~q~~i~~lE~e 41 (84)
T 1gk4_A 17 MREMEENFAVEAANYQDTIGRLQDE 41 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444
No 81
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=55.81 E-value=49 Score=23.18 Aligned_cols=41 Identities=10% Similarity=0.170 Sum_probs=23.8
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 119 RVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKA 159 (246)
Q Consensus 119 Ra~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~ 159 (246)
|...--+.+...+..+++.|.....+|..+|..|..|+.-+
T Consensus 16 R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 16 RYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455566666666666666666666666665555443
No 82
>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD, protein binding; HET: MSE; 1.85A {Mus musculus}
Probab=55.76 E-value=1.1e+02 Score=27.07 Aligned_cols=117 Identities=14% Similarity=0.142 Sum_probs=74.8
Q ss_pred HHHHHHHhhhhHHhhhch-hhHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--------------
Q 025912 104 VRELYEKSLKLDAELRVI-ESMHAELD-----RVRADIEKLCVIKQEMIKDLNEINGDLAKARDES-------------- 163 (246)
Q Consensus 104 iReL~ek~~KmEAelRa~-e~lk~El~-----Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~-------------- 163 (246)
+-.+.++-.++|+.++.. ..+-.||. .+..|.+.+....++-..+......||.+..++.
T Consensus 82 L~~i~~~hr~ie~~l~~~~k~~~~eli~pLe~k~e~d~k~~~~~~K~~~~~~k~~r~elkk~~~~~~k~qkK~rk~~~~g 161 (253)
T 2d1l_A 82 LTRMCMRHRSIEAKLRQFSSALIDCLINPLQEQMEEWKKVANQLDKDHAKEYKKARQEIKKKSSDTLKLQKKAKKVDAQG 161 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCGGGTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccccccC
Confidence 344556666666666654 24444442 2455566666655555555555555554444332
Q ss_pred ------------hhhHHHHHHHHHHHHHHHhhhhhhhhhcccccchhHHHHHHHHhHHHHHHHHHHHHHHH
Q 025912 164 ------------KDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAEL 222 (246)
Q Consensus 164 ------------qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEkNlisMarEvEKLRaEl 222 (246)
+-|.....|++...+ +-.|.|+--|++-|--.++..+..=+.=++|..|+..|+.-+
T Consensus 162 k~~~~~~l~~a~q~v~~~~~~le~~~~--~~~r~AL~EERrRycflv~~l~pv~~~e~~~~~e~~~l~~~l 230 (253)
T 2d1l_A 162 RGDIQPQLDSALQDVNDKYLLLEETEK--QAVRKALIEERGRFCTFISMLRPVIEEEISMLGEITHLQTIS 230 (253)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHH
Confidence 122233334443333 567899999999999999999999999999999999999855
No 83
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=54.51 E-value=76 Score=24.84 Aligned_cols=48 Identities=10% Similarity=0.163 Sum_probs=24.5
Q ss_pred HHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 90 SSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIK 147 (246)
Q Consensus 90 ~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~ 147 (246)
-..+.++..-.+.++..+=.++..+|++ |.+++.|+......-|+|..
T Consensus 65 E~~l~e~e~~~~~~l~~~q~~i~~lE~e----------L~~~r~em~~ql~EYq~Ll~ 112 (131)
T 3tnu_A 65 ENSLEETKGRYCMQLAQIQEMIGSVEEQ----------LAQLRCEMEQQNQEYKILLD 112 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555555555554 55555555555555555544
No 84
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=54.38 E-value=68 Score=24.30 Aligned_cols=41 Identities=27% Similarity=0.353 Sum_probs=26.9
Q ss_pred HHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 025912 107 LYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDES 163 (246)
Q Consensus 107 L~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~ 163 (246)
.-+=+.+||-|+|++.+ +.|..+.++|....+||.+++.+.
T Consensus 61 A~eLl~qMelE~r~~p~----------------s~R~~~~~klr~Yk~dL~~lk~el 101 (102)
T 2qyw_A 61 ANETLAEMEEELRYAPL----------------TFRNPMMSKLRNYRKDLAKLHREV 101 (102)
T ss_dssp HHHHHHHHHHHHHTSCH----------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCH----------------HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33444556666666532 457778888888888887777664
No 85
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=54.36 E-value=37 Score=29.42 Aligned_cols=48 Identities=13% Similarity=0.192 Sum_probs=25.8
Q ss_pred hHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025912 46 HLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVA 93 (246)
Q Consensus 46 ~LEe~La~Q~~EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i 93 (246)
.++++|..-|-.|+.|..+|.+|...--..-+|+.+.+.+|+.++...
T Consensus 10 ~~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 10 SVKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 589999999999999999999876665555555555555555544433
No 86
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=54.05 E-value=63 Score=25.15 Aligned_cols=15 Identities=13% Similarity=0.262 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 025912 75 LKQELSLAEQELRHL 89 (246)
Q Consensus 75 LrQeL~aaq~El~~l 89 (246)
|.+++..++++|+++
T Consensus 3 ~~~~~e~lre~l~~l 17 (97)
T 2eqb_B 3 LGSNYNQLKEDYNTL 17 (97)
T ss_dssp --CCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHH
Confidence 334444444444444
No 87
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=53.36 E-value=71 Score=24.16 Aligned_cols=45 Identities=18% Similarity=0.195 Sum_probs=25.9
Q ss_pred HHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 025912 105 RELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKD 165 (246)
Q Consensus 105 ReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qq 165 (246)
-+.-+=+.+||-|+|++.+ +.|..+.++|....+||.+++.+.++
T Consensus 48 ~EA~ell~qMelE~r~~p~----------------~~R~~~~~klr~Yk~dL~~lk~elk~ 92 (102)
T 1vcs_A 48 EEARELLEQMDLEVREIPP----------------QSRGMYSNRMRSYKQEMGKLETDFKR 92 (102)
T ss_dssp HHHHHHHHHHHHHHTTSCT----------------TTHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHhCCH----------------HhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455677888887743 33555666666666665555544443
No 88
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=53.17 E-value=83 Score=24.89 Aligned_cols=22 Identities=14% Similarity=0.125 Sum_probs=17.0
Q ss_pred hhhHHHHHHHHHHHHHHHhhhh
Q 025912 164 KDMAAIKAEIETERQEIHKGRA 185 (246)
Q Consensus 164 qqip~l~aEid~lrqElqr~Ra 185 (246)
.+|-+|.+||+.|+-|-|+++.
T Consensus 65 ~~v~eLe~everL~~ENq~L~~ 86 (104)
T 3s9g_A 65 ARVRELELELDRLRAENLQLLT 86 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888887764
No 89
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=53.14 E-value=29 Score=25.85 Aligned_cols=32 Identities=16% Similarity=0.152 Sum_probs=12.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 58 IQSLLQDNQRLAATHVALKQELSLAEQELRHL 89 (246)
Q Consensus 58 iqrLl~dNqRLAatHvaLrQeL~aaq~El~~l 89 (246)
+|.++..=++|-..--.|.+.+...+.+++.+
T Consensus 8 ~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~ 39 (117)
T 2zqm_A 8 VQAMLGQLESYQQQLQLVVQQKQKVQLELTEA 39 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344333333333333334444434444333
No 90
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=53.09 E-value=58 Score=26.99 Aligned_cols=69 Identities=14% Similarity=0.242 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccchhH
Q 025912 131 VRADIEKLCVIKQEMIKDLNEINGDLAK--ARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHE 199 (246)
Q Consensus 131 ~r~e~q~L~a~RQELs~qvq~ltqeL~r--~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~E 199 (246)
+-.+.+.|.+-=-+|..-|..|.+|+.. .+...+|+-.+..+|+.+..||...-..|.-||..--..-|
T Consensus 19 L~~~sd~LvtkVDDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~i~~ekP~WKKiWE 89 (141)
T 3okq_A 19 LGDLSDTLLSKVDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQEFIDTEKPHWKKTWE 89 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHH
Confidence 4566677777777777778888888775 66788899999999999999999999999999865544433
No 91
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=52.97 E-value=67 Score=23.80 Aligned_cols=47 Identities=19% Similarity=0.295 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 99 ERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKD 148 (246)
Q Consensus 99 E~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~q 148 (246)
..|-+|+.+-+.+.++...+-..+..+.|+..- ..+|...+.+|..+
T Consensus 11 ~~eeEm~~~eeel~~lke~l~k~e~~rkele~~---~~~l~~ek~~L~~q 57 (89)
T 3bas_A 11 RQEEEMKEQLKQMDKMKEDLAKTERIKKELEEQ---NVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 345555666666666666666666666666443 33666666666665
No 92
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=52.95 E-value=53 Score=22.57 Aligned_cols=36 Identities=8% Similarity=0.225 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 124 MHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKA 159 (246)
Q Consensus 124 lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~ 159 (246)
=+.....+..++..|...-.+|..+|+.|..|+..+
T Consensus 20 Kk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 20 RKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555554443
No 93
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=52.65 E-value=1.3e+02 Score=27.12 Aligned_cols=27 Identities=22% Similarity=0.355 Sum_probs=22.7
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhhhhh
Q 025912 164 KDMAAIKAEIETERQEIHKGRAAIECE 190 (246)
Q Consensus 164 qqip~l~aEid~lrqElqr~Raa~EyE 190 (246)
++|-.+.+||-.+-++|+.+|+.++.-
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 443 KKVEELEGEITTLNHKLQDASAEVERL 469 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 478889999999999999999887643
No 94
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=52.03 E-value=74 Score=30.66 Aligned_cols=29 Identities=14% Similarity=0.147 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 124 MHAELDRVRADIEKLCVIKQEMIKDLNEI 152 (246)
Q Consensus 124 lk~El~Q~r~e~q~L~a~RQELs~qvq~l 152 (246)
+-.+..++..+++.|.+.|..++.++..+
T Consensus 38 ld~~~r~~~~~~~~l~~~rn~~sk~i~~~ 66 (485)
T 3qne_A 38 EYKEWVKLRFDLDEHNKKLNSVQKEIGKR 66 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455666667777777777666544
No 95
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=51.25 E-value=1.2e+02 Score=26.04 Aligned_cols=85 Identities=20% Similarity=0.291 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 75 LKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEING 154 (246)
Q Consensus 75 LrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltq 154 (246)
++|.+..++.|+.-....-..+.+|=|.++..+=.+...|... ...++.|+...+. |+.....+...++..|..
T Consensus 22 ~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~---~~~L~~E~e~~k~---K~~~~~~e~~~~~~~Lq~ 95 (189)
T 2v71_A 22 YKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQAD---NQRLKYEVEALKE---KLEHQYAQSYKQVSVLED 95 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 4556666666666555555555555555444444444444333 3334444444444 444444444444555555
Q ss_pred HHHHHhhhhhh
Q 025912 155 DLAKARDESKD 165 (246)
Q Consensus 155 eL~r~~~d~qq 165 (246)
|+..++....+
T Consensus 96 el~~l~~~~~~ 106 (189)
T 2v71_A 96 DLSQTRAIKEQ 106 (189)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 54444444433
No 96
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=51.19 E-value=32 Score=23.82 Aligned_cols=35 Identities=14% Similarity=0.261 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 125 HAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKA 159 (246)
Q Consensus 125 k~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~ 159 (246)
+..+..+..++..|.....+|..+|..|..++..+
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666666666666665555443
No 97
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=50.85 E-value=96 Score=24.94 Aligned_cols=42 Identities=19% Similarity=0.241 Sum_probs=30.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 025912 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE 162 (246)
Q Consensus 121 ~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d 162 (246)
+..+|.||..++..+..+...-.+|..+++.|..++.++.++
T Consensus 91 ~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~ 132 (138)
T 3hnw_A 91 IYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETE 132 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777887777777777777777777777777777766544
No 98
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}
Probab=50.85 E-value=20 Score=22.93 Aligned_cols=24 Identities=33% Similarity=0.423 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh
Q 025912 73 VALKQELSLAEQELRHLSSVAASV 96 (246)
Q Consensus 73 vaLrQeL~aaq~El~~l~~~i~~i 96 (246)
.+.+|||++.+.||-.+.--++.|
T Consensus 5 aaikqelaaikkelaaikfelaai 28 (34)
T 3r4h_A 5 AAIKQELAAIKKELAAIKFELAAI 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777776665444443
No 99
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=50.70 E-value=30 Score=23.91 Aligned_cols=27 Identities=26% Similarity=0.251 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025912 134 DIEKLCVIKQEMIKDLNEINGDLAKAR 160 (246)
Q Consensus 134 e~q~L~a~RQELs~qvq~ltqeL~r~~ 160 (246)
|+..|....++|-.++..|+++++..+
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~ 46 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLK 46 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444333
No 100
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=50.47 E-value=1.4e+02 Score=26.89 Aligned_cols=10 Identities=0% Similarity=0.052 Sum_probs=4.9
Q ss_pred HHHHHHHHhh
Q 025912 56 SDIQSLLQDN 65 (246)
Q Consensus 56 ~EiqrLl~dN 65 (246)
..|+.++..+
T Consensus 359 ~~~~~vl~G~ 368 (471)
T 3mq9_A 359 TAVINAASGR 368 (471)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHHcCC
Confidence 3455555443
No 101
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=50.33 E-value=72 Score=23.35 Aligned_cols=62 Identities=21% Similarity=0.313 Sum_probs=36.8
Q ss_pred HHHHHHHhhHHHH----HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH---HHHHhhhhHHhh
Q 025912 57 DIQSLLQDNQRLA----ATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRE---LYEKSLKLDAEL 118 (246)
Q Consensus 57 EiqrLl~dNqRLA----atHvaLrQeL~aaq~El~~l~~~i~~i~aE~e~qiRe---L~ek~~KmEAel 118 (246)
||+.|.+-|..|- .+-.-...++...+..|..+...+..+++|-+.|.++ |++-=.+||.|+
T Consensus 2 el~~l~~~~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EI 70 (84)
T 1gk4_A 2 EVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEI 70 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4555555554433 3333334455566666666777777777777766554 666666677665
No 102
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=50.00 E-value=1.6e+02 Score=27.26 Aligned_cols=14 Identities=14% Similarity=0.427 Sum_probs=5.1
Q ss_pred hHHHHHHHHHHHHH
Q 025912 166 MAAIKAEIETERQE 179 (246)
Q Consensus 166 ip~l~aEid~lrqE 179 (246)
+..+..+++.++++
T Consensus 311 l~~l~~~~~~~~~~ 324 (517)
T 4ad8_A 311 AGSLQADVDALHAE 324 (517)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 103
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=48.72 E-value=84 Score=23.65 Aligned_cols=11 Identities=18% Similarity=0.329 Sum_probs=4.6
Q ss_pred HHHHHHHHHHh
Q 025912 172 EIETERQEIHK 182 (246)
Q Consensus 172 Eid~lrqElqr 182 (246)
|||+|+.++.+
T Consensus 78 e~dnl~~~~~~ 88 (93)
T 3s4r_A 78 ERDNLAEDIMR 88 (93)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 104
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=48.66 E-value=79 Score=29.81 Aligned_cols=26 Identities=12% Similarity=0.192 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 127 ELDRVRADIEKLCVIKQEMIKDLNEI 152 (246)
Q Consensus 127 El~Q~r~e~q~L~a~RQELs~qvq~l 152 (246)
+-.++..+++.|.+.|..++.++..+
T Consensus 39 ~~r~~~~~~~~l~~~~n~~sk~i~~~ 64 (455)
T 2dq0_A 39 EWRTKLKEINRLRHERNKIAVEIGKR 64 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555666666666666666543
No 105
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=48.39 E-value=1.7e+02 Score=27.00 Aligned_cols=99 Identities=15% Similarity=0.211 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchhhHHHHHH-HHHHHHHHHHHHHHHHH
Q 025912 68 LAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELD-RVRADIEKLCVIKQEMI 146 (246)
Q Consensus 68 LAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~lk~El~-Q~r~e~q~L~a~RQELs 146 (246)
+......|||.+...+++++.|...++.-.+-.+.= ..|.+.+ -..+-....+-...+ ++..| .++...|.+++
T Consensus 15 ~~e~r~~lr~~~eql~~~i~~L~~~ap~W~~aq~al-~rL~eq~---g~~~~ds~~v~~~mq~~Le~E-re~~~~Rd~~a 89 (302)
T 3ibp_A 15 AREERMALRQEQEQLQSRIQSLMQRAPVWLAAQNSL-NQLSEQC---GEEFTSSQDVTEYLQQLLERE-REAIVERDEVG 89 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHT---TCCCSSHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHH-HHHHHHh---CCcCCCHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 456678899999999999999988887666555431 1122221 223344555666663 34444 78899999999
Q ss_pred HHHHHHHHHHHHHhh-hhhhhHHHHH
Q 025912 147 KDLNEINGDLAKARD-ESKDMAAIKA 171 (246)
Q Consensus 147 ~qvq~ltqeL~r~~~-d~qqip~l~a 171 (246)
.+-+.|.+++.++.. +---.|.|++
T Consensus 90 ~~k~~Le~~ierLs~pgg~~dprL~~ 115 (302)
T 3ibp_A 90 ARKNAVDEEIERLSQPGGSEDQRLNA 115 (302)
T ss_dssp HHHHHHHHHHHHHHSCCCCCCHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 999999999988776 5555666554
No 106
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=47.87 E-value=44 Score=22.89 Aligned_cols=10 Identities=50% Similarity=0.508 Sum_probs=5.7
Q ss_pred HHHHHHHHHh
Q 025912 173 IETERQEIHK 182 (246)
Q Consensus 173 id~lrqElqr 182 (246)
||.+++|+.+
T Consensus 32 IeAi~~El~~ 41 (45)
T 1use_A 32 IEAFVQELRK 41 (45)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 4556666554
No 107
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=47.44 E-value=1.1e+02 Score=24.47 Aligned_cols=17 Identities=18% Similarity=0.149 Sum_probs=7.5
Q ss_pred HHHhhHHHHHHHHHhhH
Q 025912 50 RIAIQHSDIQSLLQDNQ 66 (246)
Q Consensus 50 ~La~Q~~EiqrLl~dNq 66 (246)
.|.++-...+..|.+=|
T Consensus 28 ~L~~~L~~AEeaL~~Kq 44 (110)
T 2v4h_A 28 DLRQQLQQAEEALVAKQ 44 (110)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 108
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=47.31 E-value=25 Score=31.68 Aligned_cols=42 Identities=10% Similarity=0.109 Sum_probs=31.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccchhHHH
Q 025912 160 RDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQR 201 (246)
Q Consensus 160 ~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~ 201 (246)
....+++-.|.++++.|+.|+.+++...+-.+|++.+.++++
T Consensus 181 n~~~~eie~L~~~~~~L~eEi~~Le~~~e~~~k~n~~rl~~L 222 (315)
T 2ve7_A 181 NVDAFKLESLEAKNRALNEQIARLEQERSTANKANAERLKRL 222 (315)
T ss_dssp TCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 555677888888888888888888888887777665554433
No 109
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=47.13 E-value=88 Score=23.43 Aligned_cols=42 Identities=10% Similarity=0.187 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-HhhhhhhhH
Q 025912 126 AELDRVRADIEKL---CVIKQEMIKDLNEINGDLAK-ARDESKDMA 167 (246)
Q Consensus 126 ~El~Q~r~e~q~L---~a~RQELs~qvq~ltqeL~r-~~~d~qqip 167 (246)
.=|.|...|++.+ .+.|..+.++|....+||.+ ++.+.+++-
T Consensus 48 ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~dl~~~lk~~lk~l~ 93 (97)
T 3onj_A 48 DLLDQMDVEVNNSIGDASERATYKAKLREWKKTIQSDIKRPLQSLV 93 (97)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3356666777777 25688889999999888888 888887763
No 110
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=46.92 E-value=70 Score=22.23 Aligned_cols=13 Identities=31% Similarity=0.148 Sum_probs=5.0
Q ss_pred HHHHHHHHHHhhh
Q 025912 172 EIETERQEIHKGR 184 (246)
Q Consensus 172 Eid~lrqElqr~R 184 (246)
+|+.|+.|+..++
T Consensus 45 ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 45 EIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333444433333
No 111
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=44.78 E-value=91 Score=22.97 Aligned_cols=24 Identities=21% Similarity=0.491 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHH
Q 025912 147 KDLNEINGDLAKARDESKDMAAIK 170 (246)
Q Consensus 147 ~qvq~ltqeL~r~~~d~qqip~l~ 170 (246)
++++.+..|+++...|-|.+..+|
T Consensus 42 ~el~~~r~e~~~ql~EYq~LlnvK 65 (86)
T 1x8y_A 42 REMAEMRARMQQQLDEYQELLDIK 65 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444333
No 112
>2y39_A Nickel and cobalt resistance protein CNRR; metal binding protein; 1.41A {Cupriavidus metallidurans} PDB: 2y3b_A 2y3d_A 2y3g_A* 2y3h_A 3epv_A*
Probab=44.66 E-value=40 Score=27.07 Aligned_cols=65 Identities=20% Similarity=0.157 Sum_probs=27.4
Q ss_pred hHhHHHHHHhhHHHHH-HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH---HHHHHHHH
Q 025912 44 LHHLEDRIAIQHSDIQ-SLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAER---DAEVRELY 108 (246)
Q Consensus 44 ~~~LEe~La~Q~~Eiq-rLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~---e~qiReL~ 108 (246)
.+.||.+.+.+...|+ .+-..|..||+...+=...-.....-++.+....++++-|. -.+||+++
T Consensus 29 leaie~~fa~~r~~le~emRaan~~La~ai~~~~~~~p~V~aaid~~h~~mG~LQkeTi~HvfeMR~VL 97 (118)
T 2y39_A 29 LELKEDAFAQRRREIETRLRAANGKLADAIAKNPAWSPEVEAATQEVERAAGDLQRATLVHVFEMRAGL 97 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3445555555554443 34445555554332111111111222223333555555555 55566555
No 113
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=44.31 E-value=59 Score=23.66 Aligned_cols=23 Identities=9% Similarity=0.280 Sum_probs=14.9
Q ss_pred hhhhhHHHHHHHHHHHhhhhHHh
Q 025912 95 SVKAERDAEVRELYEKSLKLDAE 117 (246)
Q Consensus 95 ~i~aE~e~qiReL~ek~~KmEAe 117 (246)
.++.=++.+|.+|=+++..||..
T Consensus 22 afReRK~~~i~~LE~~v~~le~~ 44 (70)
T 1gd2_E 22 AFRKRKEDHLKALETQVVTLKEL 44 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445777777777777666654
No 114
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=44.02 E-value=99 Score=23.14 Aligned_cols=58 Identities=28% Similarity=0.327 Sum_probs=36.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHH
Q 025912 61 LLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLC 139 (246)
Q Consensus 61 Ll~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~ 139 (246)
+..+|-.|-.+-.+||.+|..-.+||++|...+. + .-+..|.+.+|+.-+-.|.--|.
T Consensus 9 ~~~~~~~~~~~l~~Lr~eL~~Ke~eI~~L~e~i~-l--------------------k~kd~ErLNDEiislNIENNlL~ 66 (75)
T 3a7o_A 9 IVSHDDALLNTLAILQKELKSKEQEIRRLKEVIA-L--------------------KNKNTERLNDELISGTIENNVLQ 66 (75)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--------------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--------------------hcccHHHhhHHHHHhHHHHHHHH
Confidence 4556666667788888888877777777755443 1 11235677778777776655443
No 115
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=43.72 E-value=71 Score=23.61 Aligned_cols=30 Identities=17% Similarity=0.285 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025912 131 VRADIEKLCVIKQEMIKDLNEINGDLAKAR 160 (246)
Q Consensus 131 ~r~e~q~L~a~RQELs~qvq~ltqeL~r~~ 160 (246)
+..++..|.....||..++..+.+++.+..
T Consensus 4 L~k~i~~l~~E~eel~~klk~~~ee~~~~~ 33 (71)
T 1s1c_X 4 LTKDIEILRRENEELTEKMKKAEEEYKLEK 33 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888899999999999999999888866
No 116
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=43.31 E-value=1.4e+02 Score=25.76 Aligned_cols=14 Identities=0% Similarity=0.116 Sum_probs=6.2
Q ss_pred hHHHHHHhhHHHHH
Q 025912 46 HLEDRIAIQHSDIQ 59 (246)
Q Consensus 46 ~LEe~La~Q~~Eiq 59 (246)
-++..+.....++.
T Consensus 67 ~~~~~l~~~~a~l~ 80 (369)
T 4dk0_A 67 TQINTLNTRKAALA 80 (369)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 117
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=43.18 E-value=1.6e+02 Score=27.26 Aligned_cols=25 Identities=8% Similarity=0.295 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 126 AELDRVRADIEKLCVIKQEMIKDLN 150 (246)
Q Consensus 126 ~El~Q~r~e~q~L~a~RQELs~qvq 150 (246)
.+..++..+++.|.+.|..++.++.
T Consensus 35 ~~~r~~~~~~~~l~~~~n~~sk~i~ 59 (421)
T 1ses_A 35 REVQELKKRLQEVQTERNQVAKRVP 59 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555543
No 118
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=42.41 E-value=56 Score=24.45 Aligned_cols=29 Identities=14% Similarity=0.288 Sum_probs=20.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhhhhhhhh
Q 025912 161 DESKDMAAIKAEIETERQEIHKGRAAIEC 189 (246)
Q Consensus 161 ~d~qqip~l~aEid~lrqElqr~Raa~Ey 189 (246)
+..+.+-.|..-|+.|++|+..+|..+|-
T Consensus 17 ~~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~ 45 (83)
T 2xdj_A 17 AHSQLLTQLQQQLSDNQSDIDSLRGQIQE 45 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhchHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 34455666777778888888888877763
No 119
>1y1u_A Signal transducer and activator of transcription; STAT, DNA-binding, SH2 domain, transcription REGU signaling protein; 3.21A {Mus musculus}
Probab=42.35 E-value=95 Score=30.75 Aligned_cols=32 Identities=16% Similarity=0.018 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHhhHhhhHhHHHhhhhcCCCC
Q 025912 211 VAQQIERLQAELANAEKRARAAAAAAAVNPSI 242 (246)
Q Consensus 211 MarEvEKLRaElanaEkRa~a~~aaaa~np~~ 242 (246)
....++.|..-+.+-|=.-|--.-..|+|-||
T Consensus 109 ~l~~~~~lq~~ll~~eL~~WKrrQq~a~iG~p 140 (585)
T 1y1u_A 109 TLQLLRKQQTIILDDELIQWKRRQQLAGNGGP 140 (585)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34455556555655555555554333344444
No 120
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=41.88 E-value=1.2e+02 Score=23.52 Aligned_cols=69 Identities=12% Similarity=0.230 Sum_probs=50.8
Q ss_pred hhHHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 025912 98 AERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDM 166 (246)
Q Consensus 98 aE~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqi 166 (246)
+-+..+|-+|-+.+.++++++--++-+++-+.=-+.|-+.=-+.|..+.++.+.|-.+|..++..+.++
T Consensus 19 ~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~~L 87 (94)
T 3jsv_C 19 VAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKL 87 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC--
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 346677777888888888888777777777777777777777778777777777777777776665554
No 121
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=41.23 E-value=1.1e+02 Score=22.95 Aligned_cols=33 Identities=15% Similarity=0.340 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 126 AELDRVRADIEKLCVIKQEMIKDLNEINGDLAK 158 (246)
Q Consensus 126 ~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r 158 (246)
.++..+|..|..+...+..|..++..|..|+.+
T Consensus 56 ~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~ 88 (93)
T 3s4r_A 56 EEMRELRRQVDQLTNDKARVEVERDNLAEDIMR 88 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444433
No 122
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=41.19 E-value=38 Score=24.82 Aligned_cols=14 Identities=14% Similarity=0.266 Sum_probs=5.3
Q ss_pred HHhhhchhhHHHHH
Q 025912 115 DAELRVIESMHAEL 128 (246)
Q Consensus 115 EAelRa~e~lk~El 128 (246)
+.+++-.+-+..||
T Consensus 28 ~~~~~e~~~~~~EL 41 (107)
T 1fxk_A 28 EMQINETQKALEEL 41 (107)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 123
>2d4x_A Flagellar HOOK-associated protein 3; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 1.90A {Salmonella typhimurium}
Probab=41.06 E-value=1.6e+02 Score=24.63 Aligned_cols=77 Identities=6% Similarity=0.082 Sum_probs=57.0
Q ss_pred HhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---hhhHHHHHHHHHHHHHHHhhhhh
Q 025912 110 KSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDES---KDMAAIKAEIETERQEIHKGRAA 186 (246)
Q Consensus 110 k~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~---qqip~l~aEid~lrqElqr~Raa 186 (246)
.+.+|..+++..+....=+..+.+=++.-...-.+++.-+|.+..-+-.+..+. ....++..|++.|+.||.+.=..
T Consensus 10 ~~~~l~~~~~~l~q~~~n~~~~~s~l~~ae~aL~~i~~~l~r~rel~vqa~ngt~s~~dr~~i~~e~~~l~~~i~~~an~ 89 (248)
T 2d4x_A 10 QAVVLSQAQAQNSQYALARTFATQKVSLEESVLSQVTTAIQTAQEKIVYAGNGTLSDDDRASLATDLQGIRDQLMNLANS 89 (248)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 466788888888888888888888777777777788888888776665554332 45678899999999999875444
No 124
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=40.97 E-value=29 Score=26.94 Aligned_cols=32 Identities=22% Similarity=0.384 Sum_probs=24.2
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHhhhhhhh
Q 025912 157 AKARDESKDMAAIKAEIETERQEIHKGRAAIE 188 (246)
Q Consensus 157 ~r~~~d~qqip~l~aEid~lrqElqr~Raa~E 188 (246)
+|----.-++.-|..||+.+..++.-.|+.|+
T Consensus 49 AKWaKL~Rk~DKl~~ele~l~~~l~~~k~~F~ 80 (93)
T 3sjb_C 49 AKWTKNNRKLDSLDKEINNLKDEIQSENKAFQ 80 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333445678888899999999999998886
No 125
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=40.45 E-value=99 Score=29.16 Aligned_cols=32 Identities=13% Similarity=0.166 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 127 ELDRVRADIEKLCVIKQEMIKDLNEINGDLAK 158 (246)
Q Consensus 127 El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r 158 (246)
++..+-.+-.+|...-++|-++-..+++++.+
T Consensus 32 ~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~ 63 (455)
T 2dq0_A 32 EILKLDTEWRTKLKEINRLRHERNKIAVEIGK 63 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444444444433
No 126
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=40.26 E-value=2e+02 Score=26.06 Aligned_cols=69 Identities=14% Similarity=0.215 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhh----chhhHHHHHHHHHHHHH
Q 025912 68 LAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELR----VIESMHAELDRVRADIE 136 (246)
Q Consensus 68 LAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelR----a~e~lk~El~Q~r~e~q 136 (246)
|...--.|+.++..-++..+.+...+.+.+..-+...+.|-...-.+..-|. .++.+++|+.+++.+++
T Consensus 121 l~~~L~~L~~~i~~~q~~~~~~~~~L~~F~~~l~~d~~~f~~~~~~l~~~L~~~~~~I~~Lq~eI~~l~~~I~ 193 (346)
T 2nrj_A 121 LKEGITDLRGEIQQNQKYAQQLIEELTKLRDSIGHDVRAFGSNKELLQSILKNQGADVDADQKRLEEVLGSVN 193 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Confidence 3344455555555555555655555666655555555555555544444442 23455666665555554
No 127
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=39.63 E-value=91 Score=21.49 Aligned_cols=40 Identities=30% Similarity=0.287 Sum_probs=34.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 025912 57 DIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASV 96 (246)
Q Consensus 57 EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~i 96 (246)
-...|-..|..|++-.-.|-..|..|.++|..|+..+.++
T Consensus 10 r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 10 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3446778899999999999999999999999998887765
No 128
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=38.86 E-value=60 Score=24.93 Aligned_cols=44 Identities=5% Similarity=0.147 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q 025912 134 DIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETER 177 (246)
Q Consensus 134 e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lr 177 (246)
+++.|....|.|..+++.+++.+.........+-.....|+.|.
T Consensus 2 ~~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~ 45 (133)
T 1fxk_C 2 ALAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQ 45 (133)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45666666666777777776666666555555555555555544
No 129
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=38.51 E-value=25 Score=27.47 Aligned_cols=8 Identities=25% Similarity=0.738 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 025912 149 LNEINGDL 156 (246)
Q Consensus 149 vq~ltqeL 156 (246)
|+.|..+|
T Consensus 25 ~~~l~~~l 32 (182)
T 3kqg_A 25 IRALQGSL 32 (182)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 130
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=37.92 E-value=90 Score=24.04 Aligned_cols=45 Identities=20% Similarity=0.275 Sum_probs=32.4
Q ss_pred hHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025912 46 HLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVA 93 (246)
Q Consensus 46 ~LEe~La~Q~~EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i 93 (246)
-+|-+|..|..||+.+-.-=--|=.+|..+||.- ++||.+|+.-+
T Consensus 40 eyE~ki~~Qi~Emq~Ir~tvyeLE~~h~kmKq~Y---EeEI~rLr~eL 84 (92)
T 3vp9_A 40 DYDFKMNQQLAEMQQIRNTVYERELTHRKMKDAY---EEEIKHLKLGL 84 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 5777888888888888776667778888888743 45666665443
No 131
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=37.84 E-value=25 Score=28.89 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025912 124 MHAELDRVRADIEKLCVIKQEM 145 (246)
Q Consensus 124 lk~El~Q~r~e~q~L~a~RQEL 145 (246)
.+.++...+.-++.|...|.+|
T Consensus 13 ~r~~l~~~~~~~~~le~l~~~l 34 (135)
T 2e7s_A 13 SLKTIASQKAAIENYNQLKEDY 34 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555554443
No 132
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=37.82 E-value=2.5e+02 Score=27.00 Aligned_cols=29 Identities=10% Similarity=-0.062 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 126 AELDRVRADIEKLCVIKQEMIKDLNEING 154 (246)
Q Consensus 126 ~El~Q~r~e~q~L~a~RQELs~qvq~ltq 154 (246)
.+-..+..+++.|.+.|..++.++..+.+
T Consensus 44 ~~~r~~~~~~~~l~~~rN~~sk~i~~~~~ 72 (484)
T 3lss_A 44 KKWRRTQFLTEASKKLINICSKAVGAKKK 72 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444556666666677777666655433
No 133
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=37.68 E-value=1e+02 Score=21.55 Aligned_cols=40 Identities=18% Similarity=0.276 Sum_probs=27.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 025912 56 SDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAAS 95 (246)
Q Consensus 56 ~EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~ 95 (246)
.++..|-...+-|-.....|+.++...+.|+..|...+..
T Consensus 23 ~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 23 AEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3466666666666677777777777777777777766543
No 134
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=37.42 E-value=1.2e+02 Score=23.55 Aligned_cols=38 Identities=13% Similarity=0.271 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025912 123 SMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKAR 160 (246)
Q Consensus 123 ~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~ 160 (246)
|+..++..++.++..|.....+...++..|..+|.+.+
T Consensus 2 ~~~~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~ 39 (97)
T 2eqb_B 2 PLGSNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKEN 39 (97)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555433
No 135
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=37.42 E-value=98 Score=25.17 Aligned_cols=87 Identities=20% Similarity=0.294 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccchhHHH-----------HHHHHhHHHHHHH
Q 025912 146 IKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQR-----------EIMEKNIISVAQQ 214 (246)
Q Consensus 146 s~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~-----------qaMEkNlisMarE 214 (246)
.-++|.+..||.++..-++..-.--.|...--.|..|+|..+|.---..-+.++++ ..-+.++.-++|=
T Consensus 2 ~Rri~llEeeLer~eerl~~a~~kLeeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RK 81 (147)
T 2b9c_A 2 NRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARK 81 (147)
T ss_dssp ---------CCGGGGTTTTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34677788888888877777777777778888888888888876555555555544 2345666777777
Q ss_pred HHHHHHHHhhHhhhHhHH
Q 025912 215 IERLQAELANAEKRARAA 232 (246)
Q Consensus 215 vEKLRaElanaEkRa~a~ 232 (246)
+--+-.+|..++.|+-++
T Consensus 82 l~~~E~dLeraeeRae~a 99 (147)
T 2b9c_A 82 LVIIESDLERAEERAELS 99 (147)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 778888898888887665
No 136
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=37.33 E-value=1.3e+02 Score=22.62 Aligned_cols=41 Identities=15% Similarity=0.302 Sum_probs=27.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025912 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARD 161 (246)
Q Consensus 121 ~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~ 161 (246)
++.+-.|=.|+..---.|..++.+|.++|..||-|-.-.+.
T Consensus 11 vEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~ 51 (77)
T 2w83_C 11 VENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQG 51 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 44555555555555556778889999999998887543333
No 137
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=37.12 E-value=65 Score=27.14 Aligned_cols=46 Identities=17% Similarity=0.283 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhhh
Q 025912 143 QEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIE 188 (246)
Q Consensus 143 QELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~E 188 (246)
+.|..+++.+...|.-+..+.-.-..+++++|.++.|.-.+|-+.+
T Consensus 79 d~lekKl~~aq~kL~~L~P~~P~Yak~~a~~~q~~~d~~~~~~~~~ 124 (158)
T 3tul_A 79 DAATKKLTQAQNKLQSLDPADPGYAQAEAAVEQAGKEATEAKEALD 124 (158)
T ss_dssp HHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777778899999999999877776543
No 138
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=36.76 E-value=1.1e+02 Score=21.72 Aligned_cols=40 Identities=25% Similarity=0.298 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Q 025912 66 QRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEK 110 (246)
Q Consensus 66 qRLAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek 110 (246)
..|.+|--+||.++...++|..+|+.... .|...|.=+++
T Consensus 6 KSlVDtVYaLkDqV~eL~qe~k~m~k~lE-----eEqkARk~LE~ 45 (56)
T 2w6b_A 6 KSLVDTVYALKDEVQELRQDNKKMKKSLE-----EEQRARKDLEK 45 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Confidence 56889999999999999999999988764 66666654443
No 139
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=36.74 E-value=1.1e+02 Score=22.33 Aligned_cols=11 Identities=45% Similarity=0.603 Sum_probs=4.3
Q ss_pred HHHHhhhhHHh
Q 025912 107 LYEKSLKLDAE 117 (246)
Q Consensus 107 L~ek~~KmEAe 117 (246)
|++-=.+||.|
T Consensus 38 LlniKl~Le~E 48 (74)
T 2xv5_A 38 LLDIKLALDME 48 (74)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333344433
No 140
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=36.41 E-value=83 Score=25.05 Aligned_cols=61 Identities=16% Similarity=0.165 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 68 LAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIK 147 (246)
Q Consensus 68 LAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~ 147 (246)
|....+.|..+|...+.+|+.+..++.--..-++. +| ..=|+|=..+.|+...
T Consensus 5 L~~~~~~L~~~i~~l~~~L~~lkqa~k~~~~~~~~------------------------eL---~~LI~KWr~asq~aae 57 (122)
T 3viq_A 5 LLSRRLKLEKEVRNLQEQLITAETARKVEAKNEDK------------------------DL---QTLIQKWKNAAQQAAE 57 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH------------------------HH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHH------------------------HH---HHHHHHHHHHHHHHHH
Confidence 34445556666666666666665554322222211 22 2336777788888888
Q ss_pred HHHHHHHH
Q 025912 148 DLNEINGD 155 (246)
Q Consensus 148 qvq~ltqe 155 (246)
.|....++
T Consensus 58 eLf~~~~~ 65 (122)
T 3viq_A 58 VLFKPMAE 65 (122)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88777665
No 141
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=36.39 E-value=1.2e+02 Score=29.12 Aligned_cols=19 Identities=32% Similarity=0.295 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025912 137 KLCVIKQEMIKDLNEINGD 155 (246)
Q Consensus 137 ~L~a~RQELs~qvq~ltqe 155 (246)
++...-++|-++...++++
T Consensus 44 ~~~~~~~~l~~~rn~~sk~ 62 (485)
T 3qne_A 44 KLRFDLDEHNKKLNSVQKE 62 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 142
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=36.07 E-value=66 Score=28.20 Aligned_cols=12 Identities=17% Similarity=0.091 Sum_probs=8.1
Q ss_pred HHHHHHHHhHHH
Q 025912 199 EQREIMEKNIIS 210 (246)
Q Consensus 199 Eq~qaMEkNlis 210 (246)
=|.|-+=||+|-
T Consensus 109 VqLQNiiKniil 120 (206)
T 3oa7_A 109 TTLQNTVKEIVL 120 (206)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 367777777764
No 143
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=35.95 E-value=55 Score=23.82 Aligned_cols=15 Identities=33% Similarity=0.454 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 025912 72 HVALKQELSLAEQEL 86 (246)
Q Consensus 72 HvaLrQeL~aaq~El 86 (246)
...||+++...+.|+
T Consensus 52 n~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 52 NDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444443
No 144
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=35.64 E-value=1.3e+02 Score=22.00 Aligned_cols=54 Identities=22% Similarity=0.345 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhh
Q 025912 134 DIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECE 190 (246)
Q Consensus 134 e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyE 190 (246)
|.+.+...--.|.++++.+..|+++...|-|.+-.+|.-+| .||---|.-+|-|
T Consensus 6 e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le---~EIatYRkLLEGE 59 (74)
T 2xv5_A 6 ERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALD---MEIHAYRKLLEGE 59 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhcC
Confidence 33444444444455555555555555555555555554333 4554445444443
No 145
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=34.68 E-value=93 Score=23.22 Aligned_cols=37 Identities=11% Similarity=0.243 Sum_probs=23.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLA 157 (246)
Q Consensus 121 ~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~ 157 (246)
++.++.|+..+|+.++.+.-.=..|..+-..+.+||.
T Consensus 29 l~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD 65 (83)
T 2xdj_A 29 LSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQID 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666766777666666666666666666666654
No 146
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=34.05 E-value=2.1e+02 Score=23.92 Aligned_cols=29 Identities=17% Similarity=0.085 Sum_probs=16.3
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 119 RVIESMHAELDRVRADIEKLCVIKQEMIK 147 (246)
Q Consensus 119 Ra~e~lk~El~Q~r~e~q~L~a~RQELs~ 147 (246)
+.++.+++|+.-++.+...+....+.|..
T Consensus 96 K~~e~l~DEl~aLqlq~n~lE~kl~kLq~ 124 (152)
T 3a7p_A 96 KNTERLNAALISGTIENNVLQQKLSDLKK 124 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777776666655554444444444
No 147
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=33.64 E-value=73 Score=23.33 Aligned_cols=56 Identities=13% Similarity=0.240 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhh
Q 025912 124 MHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKG 183 (246)
Q Consensus 124 lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~ 183 (246)
.+.||.++-.+|.+|...-.+|..++..-. -...|...+..+.++++.+.++|..+
T Consensus 20 eqrEle~le~~Ie~LE~~i~~le~~ladp~----~y~~d~~~~~~l~~~l~~~e~eLe~~ 75 (89)
T 2lw1_A 20 LQRELEQLPQLLEDLEAKLEALQTQVADAS----FFSQPHEQTQKVLADMAAAEQELEQA 75 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTT----GGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcc----cccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666655555544432100 01245556666666777666666554
No 148
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=33.47 E-value=99 Score=21.27 Aligned_cols=36 Identities=19% Similarity=0.294 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHH
Q 025912 100 RDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKL 138 (246)
Q Consensus 100 ~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L 138 (246)
+=..+.+|-+++..|+.+ .+.|+.++.+++.++..|
T Consensus 20 Kk~~~~~Le~~v~~L~~~---n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 20 KLERIARLEEKVKTLKAQ---NSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 344455555555555555 555555555555554433
No 149
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=33.23 E-value=42 Score=26.78 Aligned_cols=36 Identities=14% Similarity=0.238 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhhhhcccccchhHH
Q 025912 165 DMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQ 200 (246)
Q Consensus 165 qip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq 200 (246)
+.-.|..+|..++.+|+.++.|+-|+++.+-+.++.
T Consensus 8 ~~~~L~~~i~~l~~~L~~lkqa~k~~~~~~~~eL~~ 43 (122)
T 3viq_A 8 RRLKLEKEVRNLQEQLITAETARKVEAKNEDKDLQT 43 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 345677788888999999999999999988655443
No 150
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=33.00 E-value=86 Score=23.86 Aligned_cols=39 Identities=23% Similarity=0.333 Sum_probs=32.5
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 025912 58 IQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASV 96 (246)
Q Consensus 58 iqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~i 96 (246)
+..-|.+|..|-.....|+.|++..+.|+..|+..+.-+
T Consensus 41 L~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~~ 79 (83)
T 1uii_A 41 LYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHV 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455688999999999999999999999999887766544
No 151
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=32.88 E-value=1.5e+02 Score=27.51 Aligned_cols=32 Identities=9% Similarity=0.288 Sum_probs=20.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEI 152 (246)
Q Consensus 121 ~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~l 152 (246)
.+.+++++.++..+++.|...-.++..+++.+
T Consensus 70 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (425)
T 2dq3_A 70 TTEIQNRVKELKEEIDRLEEELRKVEEELKNT 101 (425)
T ss_dssp TTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777776666666666555443
No 152
>3pwx_A Putative flagellar HOOK-associated protein; structural genomics, structural protein, PSI-2, protein STRU initiative; 2.50A {Vibrio parahaemolyticus}
Probab=32.35 E-value=2.3e+02 Score=24.03 Aligned_cols=78 Identities=14% Similarity=0.209 Sum_probs=58.6
Q ss_pred HHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhhhhHHHHHHHHHHHHHHHhhhh
Q 025912 109 EKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARD---ESKDMAAIKAEIETERQEIHKGRA 185 (246)
Q Consensus 109 ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~---d~qqip~l~aEid~lrqElqr~Ra 185 (246)
-++.+|..+++..+....=+..+.+-++.-...-++++.-+|.+..-+-.+.. .....-++..|++.|+.|+.+.=.
T Consensus 11 a~~~~l~~~i~~l~q~~~N~~~a~s~l~~ae~aL~~i~~~l~r~rel~vqa~ngt~s~~dr~ai~~E~~~l~~~i~~iaN 90 (239)
T 3pwx_A 11 IKLLNLERENSAIAQYQSNIANLKTTLSSQETHLDSVSESLKSMRDIVLWGANGSLTDQDRSGMITELKSYRDSIESSFN 90 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCTTTHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 35677888888888888888888887777777778888888877665555543 224567899999999999988654
Q ss_pred h
Q 025912 186 A 186 (246)
Q Consensus 186 a 186 (246)
+
T Consensus 91 t 91 (239)
T 3pwx_A 91 A 91 (239)
T ss_dssp C
T ss_pred c
Confidence 4
No 153
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=32.16 E-value=3e+02 Score=25.38 Aligned_cols=66 Identities=17% Similarity=0.322 Sum_probs=0.0
Q ss_pred hHHHHHHhhHH----------------HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Q 025912 46 HLEDRIAIQHS----------------DIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYE 109 (246)
Q Consensus 46 ~LEe~La~Q~~----------------EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~e 109 (246)
++|+.+..|.. ||++|+..+.+|-.--..|++--...+++|+. -..
T Consensus 172 ~f~~q~~~~e~~~~~~~~~~~~~~~~~e~~~~~~n~~~l~~~~~~~~~~~~~l~~~~~~------------------~~~ 233 (373)
T 3hhm_B 172 IFEEQCQTQERYSKEYIEKFKREGNEKEIQRIMHNYDKLKSRISEIIDSRRRLEEDLKK------------------QAA 233 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHH
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhcChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH------------------HHH
Q ss_pred HhhhhHHhhhchhhHHHHHHHHH
Q 025912 110 KSLKLDAELRVIESMHAELDRVR 132 (246)
Q Consensus 110 k~~KmEAelRa~e~lk~El~Q~r 132 (246)
..+-+|.+ +.++|-|+.|++
T Consensus 234 ~~~~~~~~---~~~lkp~l~ql~ 253 (373)
T 3hhm_B 234 EYREIDKR---MNSIKPDLIQLR 253 (373)
T ss_dssp HHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHH---hhccChHHHHHH
No 154
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=32.11 E-value=1.6e+02 Score=24.28 Aligned_cols=80 Identities=10% Similarity=0.158 Sum_probs=39.2
Q ss_pred hhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccchhHH
Q 025912 122 ESMHAELD-RVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQ 200 (246)
Q Consensus 122 e~lk~El~-Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq 200 (246)
+..|.++. ++..-+..+....+.|--+.+.+..|..+.... .--|...+-++.+++-+..-|+-+.-=|+--..+++|
T Consensus 24 e~~Ke~l~~~l~~~i~q~d~elqQLefq~kr~~~e~~~q~~~-~~~p~~~~qi~~iq~q~~~ek~~r~e~k~~l~~ql~q 102 (150)
T 4dci_A 24 PTWKEEAEREISNGIANADQQLAQLEQEGQTVVDQVRRQSAN-PLDPRVQEQVANIQQQVAGKRSELEEQKRNLLQQQAQ 102 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566653 344444455555555555555555555432211 1126666666666665555555444434333344444
Q ss_pred HH
Q 025912 201 RE 202 (246)
Q Consensus 201 ~q 202 (246)
.+
T Consensus 103 v~ 104 (150)
T 4dci_A 103 VR 104 (150)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 155
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=32.00 E-value=1.1e+02 Score=21.43 Aligned_cols=30 Identities=7% Similarity=0.204 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 126 AELDRVRADIEKLCVIKQEMIKDLNEINGD 155 (246)
Q Consensus 126 ~El~Q~r~e~q~L~a~RQELs~qvq~ltqe 155 (246)
.-+..+...+..|.....+|..+|..|.++
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~ 59 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444443
No 156
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=31.81 E-value=18 Score=25.85 Aligned_cols=33 Identities=15% Similarity=0.123 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhhhcccccchh
Q 025912 166 MAAIKAEIETERQEIHKGRAAIECEKKNRASNH 198 (246)
Q Consensus 166 ip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~ 198 (246)
.+....||..|++|+.+++..+++=||+..++-
T Consensus 61 ~~~~~~ei~~L~~e~~~L~~e~~~Lkk~~~~~~ 93 (97)
T 2jn6_A 61 AVSEAEQIRQLKKENALQRARTRHPAESCLEHH 93 (97)
T ss_dssp HHHTHHHHHHHHHCGGGGGGTTSCCCGGGGTSC
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345678999999999999999999999988753
No 157
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=31.65 E-value=1.5e+02 Score=21.83 Aligned_cols=33 Identities=24% Similarity=0.371 Sum_probs=20.4
Q ss_pred HHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHH
Q 025912 103 EVRELYEKSLKLDAELRVIESMHAELDRVRADIEKL 138 (246)
Q Consensus 103 qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L 138 (246)
...++-.+...|+.| ...|+.++.++..|+..|
T Consensus 37 r~~e~~~r~~~L~~e---N~~L~~~v~~L~~E~~~L 69 (78)
T 1gu4_A 37 RNLETQHKVLELTAE---NERLQKKVEQLSRELSTL 69 (78)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 334455566666666 666777777776666655
No 158
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=31.50 E-value=81 Score=24.77 Aligned_cols=22 Identities=18% Similarity=0.294 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHHHHHHHhhhhh
Q 025912 165 DMAAIKAEIETERQEIHKGRAA 186 (246)
Q Consensus 165 qip~l~aEid~lrqElqr~Raa 186 (246)
++-.|..||..|.|+|+-++.-
T Consensus 68 ~v~elqgEI~~Lnq~Lqda~~~ 89 (99)
T 3ni0_A 68 RIKELENEVTKLNQELENLRIQ 89 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777777777776643
No 159
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=31.00 E-value=1.7e+02 Score=22.02 Aligned_cols=34 Identities=24% Similarity=0.313 Sum_probs=20.7
Q ss_pred HHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHH
Q 025912 104 VRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCV 140 (246)
Q Consensus 104 iReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a 140 (246)
..++-.++..||.| ...|+.++.++..|++.|-.
T Consensus 38 ~~e~~~r~~~Le~E---N~~Lr~~v~~L~~E~~~Lr~ 71 (87)
T 1hjb_A 38 NLETQHKVLELTAE---NERLQKKVEQLSRELSTLRN 71 (87)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 33455566666666 66666777666666665543
No 160
>3fx0_A NF-kappa-B essential modulator; coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia, HOST-virus interaction; 3.20A {Homo sapiens}
Probab=30.84 E-value=1e+02 Score=24.03 Aligned_cols=42 Identities=12% Similarity=0.219 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhhhh
Q 025912 148 DLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIEC 189 (246)
Q Consensus 148 qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~Ey 189 (246)
++..|.+++.+...+.-+||.|++.++--+.-...=|++=|-
T Consensus 39 ~ideLKe~i~q~~~~~E~i~vL~aQ~~iY~~DF~aERaaREk 80 (96)
T 3fx0_A 39 VIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERQAREK 80 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555677778888889999999999988888887777653
No 161
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=30.42 E-value=2.7e+02 Score=26.17 Aligned_cols=79 Identities=15% Similarity=0.064 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcc----------cccchhHHHHHHHHhHHHHHHHH
Q 025912 146 IKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKK----------NRASNHEQREIMEKNIISVAQQI 215 (246)
Q Consensus 146 s~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK----------~~~e~~Eq~qaMEkNlisMarEv 215 (246)
..+-..+.++|..+...+++|-.+..++..|.+-++..-.- -|+. ..-+.+|+...+|+-+...-.+|
T Consensus 30 ~k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~~~~--~Q~~~~d~~e~~tq~skkml~~~~~~e~~~~~~~~~i 107 (409)
T 1m1j_C 30 NKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTIYPS--EKQTLPQSIEQLTQKSKKIIEEIIRYENTILAHENTI 107 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCS--STTCCSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--ccCCCCCchhhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 33334456666666666666777777777777777666211 1111 11145667777777666666777
Q ss_pred HHHHHHHhhHh
Q 025912 216 ERLQAELANAE 226 (246)
Q Consensus 216 EKLRaElanaE 226 (246)
..|+..+....
T Consensus 108 ~~l~~~~~~~~ 118 (409)
T 1m1j_C 108 QQLTDMHIMNS 118 (409)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhH
Confidence 77777665444
No 162
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=30.28 E-value=37 Score=20.89 Aligned_cols=24 Identities=46% Similarity=0.565 Sum_probs=13.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 58 IQSLLQDNQRLAATHVALKQELSLAEQELRH 88 (246)
Q Consensus 58 iqrLl~dNqRLAatHvaLrQeL~aaq~El~~ 88 (246)
|+||-..|-| |+||+++.+-|+-.
T Consensus 2 irrlkqknar-------lkqeiaaleyeiaa 25 (28)
T 3ra3_B 2 IRRLKQKNAR-------LKQEIAALEYEIAA 25 (28)
T ss_dssp -CHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred hhHHHHhhhH-------HHHHHHHHHHHHHH
Confidence 4555555555 56666666665543
No 163
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=30.23 E-value=1.9e+02 Score=22.36 Aligned_cols=43 Identities=7% Similarity=0.071 Sum_probs=20.3
Q ss_pred HhhhhhhhhHHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHH
Q 025912 91 SVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRA 133 (246)
Q Consensus 91 ~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~ 133 (246)
+..+.+..|-+.+|..|-.++.+||.=.+....+|.....+..
T Consensus 43 ~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~ 85 (96)
T 1t3j_A 43 QQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLES 85 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3334444444445555555555555544444444444444443
No 164
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=30.23 E-value=2.4e+02 Score=24.02 Aligned_cols=12 Identities=17% Similarity=0.230 Sum_probs=4.9
Q ss_pred hHHHHHHhhHHH
Q 025912 46 HLEDRIAIQHSD 57 (246)
Q Consensus 46 ~LEe~La~Q~~E 57 (246)
-++.++.....+
T Consensus 66 ~~~~~~~~~~a~ 77 (341)
T 3fpp_A 66 QAENQIKEVEAT 77 (341)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444443333
No 165
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=30.14 E-value=22 Score=21.90 Aligned_cols=23 Identities=30% Similarity=0.326 Sum_probs=12.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHH
Q 025912 60 SLLQDNQRLAATHVALKQELSLA 82 (246)
Q Consensus 60 rLl~dNqRLAatHvaLrQeL~aa 82 (246)
.|--+|..|-....+|+|-++..
T Consensus 4 alefendaleqkiaalkqkiasl 26 (28)
T 3ra3_A 4 ALEFENDALEQKIAALKQKIASL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhccHHHHHHHHHHHHHHHHh
Confidence 34445665555555666655544
No 166
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=30.13 E-value=1.5e+02 Score=22.47 Aligned_cols=49 Identities=22% Similarity=0.316 Sum_probs=36.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Q 025912 57 DIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEK 110 (246)
Q Consensus 57 EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek 110 (246)
-+..-|.+|..|-.....++.|++..+.|...|...+.-+ .+|-+++++
T Consensus 32 AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~~-----q~la~~i~~ 80 (83)
T 1wlq_A 32 ALYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHV-----QYMAEVIER 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH-----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence 3556788999999999999999999999998887766533 344455544
No 167
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=29.17 E-value=2.4e+02 Score=23.20 Aligned_cols=20 Identities=25% Similarity=0.441 Sum_probs=12.0
Q ss_pred HHHHhhHHHHHHHHHHHHHH
Q 025912 60 SLLQDNQRLAATHVALKQEL 79 (246)
Q Consensus 60 rLl~dNqRLAatHvaLrQeL 79 (246)
.|+....++|..|..+-+.|
T Consensus 77 ~~~~~~e~~a~~h~~~a~~l 96 (276)
T 2v0o_A 77 VFKTSTEKLANCHLDLVRKL 96 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455556666666666665
No 168
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=28.58 E-value=4.2e+02 Score=25.83 Aligned_cols=58 Identities=19% Similarity=0.275 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhhhcccccchhHHHHHHHHhHHHHHHHHHHHHHHHh
Q 025912 166 MAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELA 223 (246)
Q Consensus 166 ip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEkNlisMarEvEKLRaEla 223 (246)
.-.|...|++++++++++-.-++--.+.--..+.+++.+|.|+.+.-.+++..=.++.
T Consensus 632 ~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 689 (695)
T 2j69_A 632 SKRINDDIVSRKSELDNLVKQKQTREINRESEFNRLKNLQEDVIAQLQKIEAAYSNLL 689 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3457788999999999999888777777777777888877777666665555444443
No 169
>3v47_C Flagellin; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Salmonella enterica subsp}
Probab=27.81 E-value=2e+02 Score=27.32 Aligned_cols=81 Identities=11% Similarity=0.142 Sum_probs=47.6
Q ss_pred HHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hhhhHHHHHHHHHHHHHHHhhhh
Q 025912 109 EKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE---SKDMAAIKAEIETERQEIHKGRA 185 (246)
Q Consensus 109 ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d---~qqip~l~aEid~lrqElqr~Ra 185 (246)
-.+.+|.++++..+....=+....+=+|.-...-++.+.-+|.+..=.-.+..+ ....-+|..||+.|+.||.+.=.
T Consensus 8 AIa~~lrsqi~gl~Qa~rN~~dgiS~lqtAEgAL~~i~~iLqRmRELaVQAaNgT~s~~DR~aIq~Ei~qL~~eI~~Ian 87 (425)
T 3v47_C 8 AIANRFTSNIKGLTQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEIDRVSN 87 (425)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356788889998888888888888888888888888888888876544444433 23577889999999999988765
Q ss_pred hhhh
Q 025912 186 AIEC 189 (246)
Q Consensus 186 a~Ey 189 (246)
.-+|
T Consensus 88 ~T~f 91 (425)
T 3v47_C 88 QTQF 91 (425)
T ss_dssp HCEE
T ss_pred hCCc
Confidence 3333
No 170
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=27.74 E-value=2e+02 Score=21.78 Aligned_cols=14 Identities=14% Similarity=0.245 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q 025912 132 RADIEKLCVIKQEM 145 (246)
Q Consensus 132 r~e~q~L~a~RQEL 145 (246)
.+||+-=.++..||
T Consensus 20 eaEIqAKQ~i~EEL 33 (81)
T 1wt6_A 20 EEEVLTRQSLSREM 33 (81)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444444
No 171
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=27.69 E-value=52 Score=28.78 Aligned_cols=64 Identities=17% Similarity=0.111 Sum_probs=38.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH---HHHHHHHHHhhhhHHhh
Q 025912 55 HSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERD---AEVRELYEKSLKLDAEL 118 (246)
Q Consensus 55 ~~EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~e---~qiReL~ek~~KmEAel 118 (246)
...+..++..+..+.+.+-.|..|+...+.+|..|........+|-. .+.-.||.++-|+.-+.
T Consensus 140 ~~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~te~~p~~k~~~qly~~vt~i~w~~ 206 (250)
T 2ve7_C 140 RETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDTTVTIPSAVYVAQLYHQVSKIEWEY 206 (250)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC-------------CTTTHHHHHHHHHHHCCEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhceeec
Confidence 34577788888888888888888888888888887777777766655 56777777777766544
No 172
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=27.28 E-value=1.8e+02 Score=26.91 Aligned_cols=48 Identities=10% Similarity=0.145 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Q 025912 133 ADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEI 180 (246)
Q Consensus 133 ~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqEl 180 (246)
.++..|.....+|..+++.+..++.........--.++-.+.+--+|+
T Consensus 10 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~el 57 (403)
T 4etp_A 10 EKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQEL 57 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333333333334444444444444433333333333333333333333
No 173
>2rjz_A PILO protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Pseudomonas aeruginosa}
Probab=26.08 E-value=79 Score=25.27 Aligned_cols=35 Identities=9% Similarity=0.129 Sum_probs=18.3
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhh
Q 025912 152 INGDLAKARDESKDMAAIKAEIETERQEIHKGRAA 186 (246)
Q Consensus 152 ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa 186 (246)
|.+++...+..+..+|.++++++.|++++...-..
T Consensus 3 L~~~~~~k~~~aa~L~~l~~ql~~l~~~l~~l~~~ 37 (147)
T 2rjz_A 3 LKQQFSTKAFQAANLEAYKAQMKEMEESFGALLRQ 37 (147)
T ss_dssp HHHHHHHTGGGCSSHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 34444445555555555555555555555444333
No 174
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=26.03 E-value=3.7e+02 Score=24.28 Aligned_cols=58 Identities=10% Similarity=0.104 Sum_probs=33.0
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccc-------c-------chhHHHHHHHHhHHHHHHHHHHHHHHH
Q 025912 159 ARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNR-------A-------SNHEQREIMEKNIISVAQQIERLQAEL 222 (246)
Q Consensus 159 ~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~-------~-------e~~Eq~qaMEkNlisMarEvEKLRaEl 222 (246)
+.++...||.|+.+|+.++.++... -+|+..+. + =.++ +.-|++-.|..|+++|+..+
T Consensus 171 L~~~~~~I~~Lq~eI~~l~~~I~~~---~~~i~~~~~~~~g~~i~~~i~Ggi~a~---~a~k~~~~~~~ei~~l~~~i 242 (346)
T 2nrj_A 171 LKNQGADVDADQKRLEEVLGSVNYY---KQLESDGFNVMKGAILGLPIIGGIIVG---VARDNLGKLEPLLAELRQTV 242 (346)
T ss_dssp HHHTTCCHHHHHHHHHHHTGGGCGG---GCCC--CCGGGTSCEEEEEETTTEEEE---EEGGGHHHHHHHHHHHHSCC
T ss_pred HhcccccHHHHHHHHHHHHHHHHHH---HHHHhccccccccceehhhhhhHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 4455667888888888888888733 23443221 1 0000 01155666777887777665
No 175
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=26.03 E-value=99 Score=28.75 Aligned_cols=24 Identities=13% Similarity=0.250 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 128 LDRVRADIEKLCVIKQEMIKDLNE 151 (246)
Q Consensus 128 l~Q~r~e~q~L~a~RQELs~qvq~ 151 (246)
-.++..+++.|.+.|..++.++..
T Consensus 39 ~r~~~~~~~~l~~~~n~~sk~i~~ 62 (425)
T 2dq3_A 39 RREIIKRLEALRSERNKLSKEIGK 62 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566666666666666554
No 176
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=25.86 E-value=85 Score=28.11 Aligned_cols=31 Identities=19% Similarity=0.263 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 128 LDRVRADIEKLCVIKQEMIKDLNEINGDLAK 158 (246)
Q Consensus 128 l~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r 158 (246)
+.++.+-..+|....+++..++..|..||.+
T Consensus 63 l~~L~arNe~L~~~Lk~ar~El~~LkeEler 93 (251)
T 3m9b_A 63 IDSLAARNSKLMETLKEARQQLLALREEVDR 93 (251)
T ss_dssp HHHHTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444444433
No 177
>2vkl_A RV0948C/MT0975; helical, intracellular, chorismate mutase, isomerase; 1.65A {Mycobacterium tuberculosis} PDB: 2qbv_A 2w19_C 2w1a_C*
Probab=25.47 E-value=1.6e+02 Score=21.78 Aligned_cols=36 Identities=25% Similarity=0.387 Sum_probs=30.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 120 VIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGD 155 (246)
Q Consensus 120 a~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqe 155 (246)
..+.+|+++..+-.++-.|.+.|-.++.+|..+..+
T Consensus 13 ~L~~lR~~ID~iD~~Ll~LL~~R~~~~~~Ig~~K~~ 48 (90)
T 2vkl_A 13 EIDTLREEIDRLDAEILALVKRRAEVSKAIGKARMA 48 (90)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999888877765
No 178
>2py8_A Hypothetical protein RBCX; all helical fold, chaperone; HET: PE4; 2.45A {Synechocystis SP} SCOP: a.280.1.1
Probab=25.25 E-value=2.1e+02 Score=23.72 Aligned_cols=60 Identities=22% Similarity=0.302 Sum_probs=46.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhhhhhHHHHHHHHHHHhhhhHHh
Q 025912 56 SDIQSLLQDNQRLAATHVALKQELSLAEQELRHL-SSVAASVKAERDAEVRELYEKSLKLDAE 117 (246)
Q Consensus 56 ~EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~l-~~~i~~i~aE~e~qiReL~ek~~KmEAe 117 (246)
.=|+.|+.+|+-||--.+..|.-++.---|- + ..+...|+.++-..+|+.++++..+..|
T Consensus 55 ~fL~~Lmre~~~LAlRIMeVR~~ya~e~fe~--l~em~~~~I~~~N~elmRq~leR~t~~~~e 115 (147)
T 2py8_A 55 TFLTELLDENKELVLRILAVREDIAESVLDF--LPGMTRNSLAESNIAHRRHLLERLTRTVAE 115 (147)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHGGG--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 3488899999999999999998887732222 3 4456778888888999999999877654
No 179
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=25.05 E-value=2e+02 Score=23.52 Aligned_cols=29 Identities=14% Similarity=0.221 Sum_probs=12.8
Q ss_pred HHhhhhhhhhHHHHHHHHHHHhhhhHHhh
Q 025912 90 SSVAASVKAERDAEVRELYEKSLKLDAEL 118 (246)
Q Consensus 90 ~~~i~~i~aE~e~qiReL~ek~~KmEAel 118 (246)
+..|..|+.....++..|-+++..|+..|
T Consensus 40 n~eI~~ik~~~~~~~~~l~~~i~~l~~~l 68 (171)
T 2p2u_A 40 NEAIDAAKARASQKSAPLLARRKELEDGV 68 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443
No 180
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=25.04 E-value=2.2e+02 Score=21.40 Aligned_cols=24 Identities=13% Similarity=0.271 Sum_probs=12.2
Q ss_pred chhHHHHHHHHhHHHHHHHHHHHH
Q 025912 196 SNHEQREIMEKNIISVAQQIERLQ 219 (246)
Q Consensus 196 e~~Eq~qaMEkNlisMarEvEKLR 219 (246)
+..+.++..+.-|..-..-++||+
T Consensus 71 e~~dE~~Sl~~q~~~~~~qLdkL~ 94 (96)
T 3q8t_A 71 ELDDELKSVENQMRYAQMQLDKLK 94 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444555555555555555554
No 181
>3oka_C N-terminal His-affinity TAG; GT-B fold, alpha-mannosyltransferase, GDP-MAN binding, trans; HET: GDD; 2.20A {Escherichia coli}
Probab=24.90 E-value=28 Score=20.22 Aligned_cols=19 Identities=37% Similarity=0.585 Sum_probs=13.6
Q ss_pred cccchhccccCCCCCcccc
Q 025912 5 GNSLHTTLHNHSQFTMSGR 23 (246)
Q Consensus 5 ~~~~~~~~h~~~~~~~~~r 23 (246)
|.--|..-|.|||-+.+||
T Consensus 2 ghhhhhhhhhhssghiegr 20 (21)
T 3oka_C 2 GHHHHHHHHHHSSGHIEGR 20 (26)
T ss_pred Ccccccccccccccccccc
Confidence 3444566677899998887
No 182
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=24.90 E-value=59 Score=28.11 Aligned_cols=24 Identities=29% Similarity=0.399 Sum_probs=21.6
Q ss_pred HHHHhhHHHHHHHHHhhHHHHHHH
Q 025912 49 DRIAIQHSDIQSLLQDNQRLAATH 72 (246)
Q Consensus 49 e~La~Q~~EiqrLl~dNqRLAatH 72 (246)
++++...+++..|..+|+||..+|
T Consensus 161 ~~i~~L~a~N~hLqkENeRL~~e~ 184 (186)
T 3q4f_C 161 DTIAENQAKNEHLQKENERLLRDW 184 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 488899999999999999998876
No 183
>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering, endoplasmic reticulum, ER-golgi transport, membrane, phosphoprotein; 3.00A {Saccharomyces cerevisiae}
Probab=24.88 E-value=3.9e+02 Score=27.00 Aligned_cols=47 Identities=19% Similarity=0.273 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Q 025912 127 ELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEI 173 (246)
Q Consensus 127 El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEi 173 (246)
+|...-+-|+.+...|.+|+.++|..++.......+..+...+-++|
T Consensus 11 dl~~i~~~i~~~~~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i 57 (706)
T 3fhn_A 11 DLLNINDRIKQVQNERNELASKLQNLKQSLASNDTEVALSEVIAQDI 57 (706)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCCCHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHH
Confidence 56778888999999999999999999997766666666666555555
No 184
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=24.82 E-value=4.7e+02 Score=25.11 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=9.0
Q ss_pred hHHHHHHHHHHHHHHHhhhhh
Q 025912 166 MAAIKAEIETERQEIHKGRAA 186 (246)
Q Consensus 166 ip~l~aEid~lrqElqr~Raa 186 (246)
|-.|+..++.++..|+.+-..
T Consensus 170 i~~L~~~~~~l~~ki~~l~~~ 190 (464)
T 1m1j_B 170 LRVLRAVIDSLHKKIQKLENA 190 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444333
No 185
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=24.62 E-value=2.2e+02 Score=21.19 Aligned_cols=45 Identities=16% Similarity=0.264 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchh
Q 025912 74 ALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIE 122 (246)
Q Consensus 74 aLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e 122 (246)
-|...|-.-|.||-+|+..++++++-=.- -.+=..|||.+.+...
T Consensus 7 eL~~kl~~Kq~EI~rLnvlvgslR~KLiK----YtelnKKLe~~~~~~q 51 (74)
T 2q6q_A 7 ELNFKLREKQNEIFELKKIAETLRSKLEK----YVDITKKLEDQNLNLQ 51 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhh
Confidence 35566777899999999999999986433 3455678888765543
No 186
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=24.40 E-value=1.8e+02 Score=20.09 Aligned_cols=35 Identities=14% Similarity=0.194 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 125 HAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKA 159 (246)
Q Consensus 125 k~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~ 159 (246)
+..+..+..++..|...-.+|..+|..|..++..+
T Consensus 22 k~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~L 56 (63)
T 2wt7_A 22 RELTDTLQAETDQLEDEKSALQTEIANLLKEKEKL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555554443
No 187
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=24.27 E-value=1.6e+02 Score=19.58 Aligned_cols=20 Identities=25% Similarity=0.270 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHhhhhhhhh
Q 025912 170 KAEIETERQEIHKGRAAIEC 189 (246)
Q Consensus 170 ~aEid~lrqElqr~Raa~Ey 189 (246)
..++...+-++..+...++|
T Consensus 39 ~~~l~~~~~~I~~~k~qi~~ 58 (60)
T 3htk_A 39 FEKLNTIRDEVIKKKNQNEY 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34444444445444444444
No 188
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=24.19 E-value=4.7e+02 Score=24.87 Aligned_cols=106 Identities=8% Similarity=0.167 Sum_probs=62.2
Q ss_pred HHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHH
Q 025912 57 DIQSLLQD-NQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADI 135 (246)
Q Consensus 57 EiqrLl~d-NqRLAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~ 135 (246)
+||.+|.+ |+.|-...--|++.|... .....+...+++.+++...+--+.....|.+=.|+.
T Consensus 53 rLqg~Ldk~er~~~~rIe~L~~~L~~~-----------s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s------ 115 (390)
T 1deq_A 53 RMKGLIDEVDQDFTSRINKLRDSLFNY-----------QKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQIN------ 115 (390)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHH-----------HHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHH------
Confidence 36666543 555555555565555432 223446778888888888777777666665544331
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhhhh
Q 025912 136 EKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIEC 189 (246)
Q Consensus 136 q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~Ey 189 (246)
.+|-.++.-|.. +....++.|-.|+.-|+.++-++||+=.+|||
T Consensus 116 -------~eLe~~i~~lk~---~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~Id~ 159 (390)
T 1deq_A 116 -------EDLRSRIEILRR---KVIEQVQRINLLQKNVRDQLVDMKRLEVDIDI 159 (390)
T ss_pred -------HHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222222222 23444556777788888888888887766655
No 189
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=23.88 E-value=2.7e+02 Score=21.95 Aligned_cols=89 Identities=20% Similarity=0.364 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Q 025912 101 DAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEI 180 (246)
Q Consensus 101 e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqEl 180 (246)
|...|+|-.+...|..| +|.+|. |+....++....+..|.+||..++.....+-.=.-+|+----.|
T Consensus 2 Ek~~rdL~~~~~~L~~E---~e~~k~----------K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDL 68 (111)
T 2v66_B 2 EQRNRDLQADNQRLKYE---VEALKE----------KLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDL 68 (111)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHH---HHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH
Confidence 44667777777776666 444554 45555566666666666777666666665544444444433334
Q ss_pred Hhh-hhh----hhhhcccccchhHHHHHHHHhHH
Q 025912 181 HKG-RAA----IECEKKNRASNHEQREIMEKNII 209 (246)
Q Consensus 181 qr~-Raa----~EyEKK~~~e~~Eq~qaMEkNli 209 (246)
-|. |.+ -++|.|-| ++||+|-+
T Consensus 69 ER~~R~t~~SLeD~E~k~n-------~aiErnal 95 (111)
T 2v66_B 69 ERAKRATIVSLEDFEQRLN-------QAIERNAF 95 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHH-------HHHHHHHH
Confidence 332 222 35666654 67888743
No 190
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=23.73 E-value=4.1e+02 Score=24.04 Aligned_cols=120 Identities=9% Similarity=0.048 Sum_probs=0.0
Q ss_pred ccCCCCCccccccccCCCCCCCCCCCCCCCchH-----hHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 025912 13 HNHSQFTMSGRRVLREPPLSTRALPPQHSPSLH-----HLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELR 87 (246)
Q Consensus 13 h~~~~~~~~~r~~~~~~~~~~~~~p~p~~p~~~-----~LEe~La~Q~~EiqrLl~dNqRLAatHvaLrQeL~aaq~El~ 87 (246)
|+.+.|.+.+.-.|.+.++-+..-..|-.+... .|-.+|..-..+|.. +++++..-++|+-
T Consensus 268 ~~~tg~~~P~~~~Fep~~~~d~~~l~~~~~~~~e~~~~~lq~~L~~~~~~l~~--------------~~~~~~~k~~~v~ 333 (406)
T 4dyl_A 268 QYGSAPDVPPCVTFDESLLEEGEPLEPGELQLNELTVESVQHTLTSVTDELAV--------------ATEMVFRRQEMVT 333 (406)
T ss_dssp HHCCCCCCCCCCCCCTTCCC------TTCCCCSTTTHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHH
T ss_pred HcCCCCCCCCCCccccCcccccccCCccchhhhHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHH
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 88 HLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEI 152 (246)
Q Consensus 88 ~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~l 152 (246)
.|...+.+++.=.+-..+ ++...++.+ ..-.+.+|++++..--+|.+.+.-|-.+++.+
T Consensus 334 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~----~~e~~~~~~~~~~~~~~~~~q~~~~~~~~~~~ 392 (406)
T 4dyl_A 334 QLQQELRNEEENTHPRER--VQLLGKRQV----LQEALQGLQVALCSQAKLQAQQELLQTKLEHL 392 (406)
T ss_dssp HHHHHHHHHHHHSCTTCG--GGGHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCCcchH--HHHHhHHhh----HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhc
No 191
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=23.51 E-value=2.2e+02 Score=21.88 Aligned_cols=15 Identities=33% Similarity=0.585 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHhhhh
Q 025912 149 LNEINGDLAKARDES 163 (246)
Q Consensus 149 vq~ltqeL~r~~~d~ 163 (246)
|+.||+||+.+..+.
T Consensus 38 i~~Lt~eLq~A~~ea 52 (90)
T 4b6x_A 38 VNNLTDELQDAIDEA 52 (90)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcc
Confidence 566677776665443
No 192
>2d8d_A Aroag, phospho-2-dehydro-3-deoxyheptonate aldolase/chori mutase; chorismate, dimer, structural genomics, NPPSFA; 1.15A {Thermus thermophilus} SCOP: a.130.1.1 PDB: 2d8e_A
Probab=23.39 E-value=1.8e+02 Score=20.85 Aligned_cols=35 Identities=20% Similarity=0.515 Sum_probs=28.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGD 155 (246)
Q Consensus 121 ~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqe 155 (246)
.+.+|.++..+-.++-.|.+.|-.++.+|-.+..+
T Consensus 5 L~~lR~~ID~iD~~l~~Ll~~R~~~~~~i~~~K~~ 39 (90)
T 2d8d_A 5 IQALRKEVDRVNREILRLLSERGRLVQEIGRLQTE 39 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888888888998888888777654
No 193
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=23.31 E-value=2.3e+02 Score=25.83 Aligned_cols=15 Identities=20% Similarity=0.175 Sum_probs=8.1
Q ss_pred HHHHHHHhhhhHHhh
Q 025912 104 VRELYEKSLKLDAEL 118 (246)
Q Consensus 104 iReL~ek~~KmEAel 118 (246)
+..|.+++.++|..+
T Consensus 7 ~~~~~~~~~~~e~~i 21 (323)
T 1lwu_C 7 VQKILEEVRILEQIG 21 (323)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555666665543
No 194
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=23.26 E-value=3.1e+02 Score=22.50 Aligned_cols=15 Identities=20% Similarity=0.308 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHhhHh
Q 025912 212 AQQIERLQAELANAE 226 (246)
Q Consensus 212 arEvEKLRaElanaE 226 (246)
.+++||++.-+.+|+
T Consensus 162 ~k~~eK~~~k~~ka~ 176 (276)
T 2v0o_A 162 QREIEKAAVKSKKAT 176 (276)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 467777777665554
No 195
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=23.07 E-value=2.4e+02 Score=26.20 Aligned_cols=49 Identities=20% Similarity=0.223 Sum_probs=31.2
Q ss_pred hHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 025912 46 HLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAA 94 (246)
Q Consensus 46 ~LEe~La~Q~~EiqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~ 94 (246)
-|+++|..-...+..|...++.+.+.-..+++.|...+.+-+.|...+-
T Consensus 7 ~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~ 55 (412)
T 3u06_A 7 ALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVM 55 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777777777777766666666666555555555544443
No 196
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=23.03 E-value=2.6e+02 Score=21.56 Aligned_cols=47 Identities=19% Similarity=0.275 Sum_probs=24.3
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHH
Q 025912 89 LSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADI 135 (246)
Q Consensus 89 l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~ 135 (246)
|+...+.+...-|.--.+|-+.+..|+.++..+|.+-...-.+|..+
T Consensus 34 Ls~tfarLc~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA 80 (96)
T 1t3j_A 34 MATTFARLCQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLLRNKA 80 (96)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 44445555555555555555555555555555555555444444433
No 197
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=22.39 E-value=2.5e+02 Score=21.91 Aligned_cols=32 Identities=22% Similarity=0.160 Sum_probs=23.7
Q ss_pred cchhHHHHHHHHhHHHHHHHHHHHHHHHhhHh
Q 025912 195 ASNHEQREIMEKNIISVAQQIERLQAELANAE 226 (246)
Q Consensus 195 ~e~~Eq~qaMEkNlisMarEvEKLRaElanaE 226 (246)
.+..+..+.+...+-.+-+|+++|+.+++...
T Consensus 28 ~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~~ 59 (171)
T 2zvf_A 28 AKLPKTVERFFEEWKDQRKEIERLKSVIADLW 59 (171)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777777778888888888887654
No 198
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=22.38 E-value=4.6e+02 Score=24.18 Aligned_cols=25 Identities=8% Similarity=0.072 Sum_probs=14.5
Q ss_pred ccccchhHHHHHHHHhHHHHHHHHH
Q 025912 192 KNRASNHEQREIMEKNIISVAQQIE 216 (246)
Q Consensus 192 K~~~e~~Eq~qaMEkNlisMarEvE 216 (246)
.+....+=.+-.++.+|+..+++.-
T Consensus 156 ~G~~~~~p~ga~l~~aL~~~~~~~~ 180 (421)
T 1ses_A 156 SRSYALKGDLALYELALLRFAMDFM 180 (421)
T ss_dssp SSCCCEETHHHHHHHHHHHHHHHHH
T ss_pred CCeEEECcHHHHHHHHHHHHHHHHH
Confidence 3445555556666666666666543
No 199
>3brv_B NF-kappa-B essential modulator; NEMO, IKK-gamma, FIP3, ikkap1, NF-KB essential modulator, at binding, kinase, nucleotide-binding, phosphoprotein; 2.20A {Homo sapiens} PDB: 3brt_B
Probab=22.30 E-value=2.4e+02 Score=20.83 Aligned_cols=50 Identities=24% Similarity=0.328 Sum_probs=38.3
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Q 025912 58 IQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEK 110 (246)
Q Consensus 58 iqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek 110 (246)
+++|+.||+-|-+ ||||-=.+-++=..-|+..-.+=+-|+|.-++.+-+-
T Consensus 10 ~q~ll~EN~~Lre---AlkqsNq~mkeR~eeL~~wqekQkeErefl~~kf~EA 59 (70)
T 3brv_B 10 LQRCLEENQELRD---AIRQSNQILRERCEELLHFQASQREEKEFLMCKFQEA 59 (70)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 6889999999854 6788777777777778888888888887765554443
No 200
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=22.20 E-value=2.6e+02 Score=21.12 Aligned_cols=19 Identities=11% Similarity=-0.127 Sum_probs=8.2
Q ss_pred hHHHHHHHHHHHhhhhHHh
Q 025912 99 ERDAEVRELYEKSLKLDAE 117 (246)
Q Consensus 99 E~e~qiReL~ek~~KmEAe 117 (246)
.-+.++..+-..+..+|++
T Consensus 34 ~~~~e~~~~q~~i~~lE~e 52 (95)
T 3mov_A 34 LLAKEKDNSRRMLTDKERE 52 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444
No 201
>1ucu_A Phase 1 flagellin; flagellar filament, cryo-electron microscopy, helical reconstruction, structural protein; 4.00A {Salmonella typhimurium} SCOP: e.32.1.1 PDB: 3a5x_A
Probab=22.02 E-value=5.1e+02 Score=24.47 Aligned_cols=82 Identities=12% Similarity=0.147 Sum_probs=62.4
Q ss_pred HHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---hhhHHHHHHHHHHHHHHHhhh
Q 025912 108 YEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDES---KDMAAIKAEIETERQEIHKGR 184 (246)
Q Consensus 108 ~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~---qqip~l~aEid~lrqElqr~R 184 (246)
+-.+.+|.++++..+....=+....+=++.-...-++.+.-+|.+..-...+..+. ...-++..|++.|+.||.+.=
T Consensus 47 ~aia~~l~~~i~~l~q~~~N~~~~~s~lqtae~aL~~i~~~Lqr~relavqaangt~s~~dr~ai~~Ei~~l~~ei~~ia 126 (494)
T 1ucu_A 47 QAIANRFTANIKGLTQASRNANDGISIAQTTEGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLNEIDRVS 126 (494)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677888898888888888888888788777888888888888776555554332 456788899999999999876
Q ss_pred hhhhh
Q 025912 185 AAIEC 189 (246)
Q Consensus 185 aa~Ey 189 (246)
..-+|
T Consensus 127 n~t~f 131 (494)
T 1ucu_A 127 GQTQF 131 (494)
T ss_dssp HHCCB
T ss_pred hhCcc
Confidence 64333
No 202
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=21.98 E-value=2.6e+02 Score=21.15 Aligned_cols=46 Identities=15% Similarity=0.160 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhhhhHHh-hhchhhHHHHHHHHHHHHHHHHHHHHHH
Q 025912 100 RDAEVRELYEKSLKLDAE-LRVIESMHAELDRVRADIEKLCVIKQEM 145 (246)
Q Consensus 100 ~e~qiReL~ek~~KmEAe-lRa~e~lk~El~Q~r~e~q~L~a~RQEL 145 (246)
+|+.|++=+++..|-=.+ =+..+.|..||--+...++.|...-++|
T Consensus 36 KElKiKeGaENL~katt~~kk~~~~V~~eL~~sn~kl~~L~~eL~eL 82 (86)
T 1cxz_B 36 KELKLKEGAENLRRATTDLGRSLGPVELLLRGSSRRLDLLHQQLQEL 82 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 788888888888877777 5556666666655555444444333333
No 203
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=21.83 E-value=1.9e+02 Score=19.61 Aligned_cols=36 Identities=22% Similarity=0.333 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHH
Q 025912 100 RDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKL 138 (246)
Q Consensus 100 ~e~qiReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L 138 (246)
+-..+.+|-++...|+.+ ...|+.++.+++.|+..|
T Consensus 20 Kk~~~~~Le~~~~~L~~~---n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 20 RKVWVQSLEKKAEDLSSL---NGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 334455555555555555 455555555555555444
No 204
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=21.74 E-value=1.9e+02 Score=22.18 Aligned_cols=39 Identities=13% Similarity=0.236 Sum_probs=23.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh
Q 025912 122 ESMHAELDRVRADIEKLCVIKQ-EMIKDLNEINGDLAKAR 160 (246)
Q Consensus 122 e~lk~El~Q~r~e~q~L~a~RQ-ELs~qvq~ltqeL~r~~ 160 (246)
|.+|.|...+-.|+..+...++ |.-.||++=.+|++..+
T Consensus 17 D~ir~Efe~~~~e~~~~k~q~~~eyE~ki~~Qi~Emq~Ir 56 (92)
T 3vp9_A 17 DAIRQEFLQVSQEANTYRLQNQKDYDFKMNQQLAEMQQIR 56 (92)
T ss_dssp CCTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence 5566666666666666666665 66666555555544433
No 205
>3emo_C HIA (adhesin); transmembrane, outer membrane, trimeric autotransporter, membrane protein/cell adhesion complex; 3.00A {Haemophilus influenzae}
Probab=21.70 E-value=2.7e+02 Score=22.96 Aligned_cols=52 Identities=27% Similarity=0.303 Sum_probs=35.0
Q ss_pred ccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhHhhhHhHHH---hhhhcCCCCC
Q 025912 192 KNRASNHEQREIMEKNIISVAQQIERLQAELANAEKRARAAA---AAAAVNPSIY 243 (246)
Q Consensus 192 K~~~e~~Eq~qaMEkNlisMarEvEKLRaElanaEkRa~a~~---aaaa~np~~~ 243 (246)
.+.+=|.-|+......+-.+...|..|...+-+.+|++++.. +|.++-|-+|
T Consensus 51 ~tDAvN~~Ql~~~~~~v~n~~~~in~L~~~I~~~~k~a~aGiA~A~A~A~LP~~~ 105 (162)
T 3emo_C 51 STDAINGSQLYAVAKGVTNLAGQVNNLEGKVNKVGKRADAGTASALAASQLPQAT 105 (162)
T ss_dssp CCCBCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred CCccccHHHHhhhhhhhhhhHHHHHHHHhhhhhhHHhHHHHHHHHHHhccCCCcC
Confidence 445556777777777666667778888888888888876553 2334556554
No 206
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=21.70 E-value=2.6e+02 Score=21.05 Aligned_cols=41 Identities=10% Similarity=0.183 Sum_probs=27.9
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhhhhcccccchhHHHHHHH
Q 025912 165 DMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIME 205 (246)
Q Consensus 165 qip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaME 205 (246)
-+..|...|+..++++..++..++.-++.-.+..-..+++|
T Consensus 75 fi~~L~~~I~~q~~~l~~~~~~~e~~r~~l~~a~~~~k~~e 115 (150)
T 3ajw_A 75 FIQTLEKAIEQHRLQLTQWTQKVDLALKSWREKKQRLQAWQ 115 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677777777777777777777766666655555555555
No 207
>1io1_A Phase 1 flagellin; beta-folium, structural protein; 2.00A {Salmonella typhimurium} SCOP: e.32.1.1
Probab=21.69 E-value=4.2e+02 Score=24.30 Aligned_cols=75 Identities=13% Similarity=0.165 Sum_probs=47.1
Q ss_pred HHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---hhhHHHHHHHHHHHHHHHhhhhhhhh
Q 025912 115 DAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDES---KDMAAIKAEIETERQEIHKGRAAIEC 189 (246)
Q Consensus 115 EAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~---qqip~l~aEid~lrqElqr~Raa~Ey 189 (246)
.++++..+....=+....+=+|.-...-++.+.-+|.+..=.-.+..+. ...-++..||+.|+.||.+.-...+|
T Consensus 2 ~~~i~~l~q~~~N~~~~~s~lqtae~aL~~i~~~Lqr~relavqaangt~s~~dr~ai~~Ei~~l~~ei~~ia~~t~f 79 (398)
T 1io1_A 2 TANIKGLTQASRNANDGISIAQTTEGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLNEIDRVSGQTQF 79 (398)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHCCB
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhcee
Confidence 3455555555555556666666666666677777776665444444322 34678899999999999986554444
No 208
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=21.63 E-value=2.2e+02 Score=26.32 Aligned_cols=25 Identities=8% Similarity=0.182 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 126 AELDRVRADIEKLCVIKQEMIKDLN 150 (246)
Q Consensus 126 ~El~Q~r~e~q~L~a~RQELs~qvq 150 (246)
.++..+.....+-...|..|-.++|
T Consensus 31 ~~~~~~~~~~~~~~~~rr~l~n~~~ 55 (403)
T 4etp_A 31 LGMKELNEILIKEETVRRTLHNELQ 55 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444443
No 209
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=21.61 E-value=5.8e+02 Score=24.97 Aligned_cols=43 Identities=16% Similarity=0.246 Sum_probs=35.6
Q ss_pred HhhhhhhhhhcccccchhHHHHHHHHhHHHHHHHHHHHHHHHh
Q 025912 181 HKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELA 223 (246)
Q Consensus 181 qr~Raa~EyEKK~~~e~~Eq~qaMEkNlisMarEvEKLRaEla 223 (246)
.-+|.-|+|=|..=.+++.+.+++.+|+...-.+|.||-..|.
T Consensus 114 ~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~ 156 (491)
T 1m1j_A 114 TELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDID 156 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777777788889999999999999999999988774
No 210
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=21.53 E-value=5.7e+02 Score=25.22 Aligned_cols=25 Identities=48% Similarity=0.464 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhhh
Q 025912 166 MAAIKAEIETERQEIHKGRAAIECE 190 (246)
Q Consensus 166 ip~l~aEid~lrqElqr~Raa~EyE 190 (246)
+..|+.|+..+++++.-.++..+.|
T Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (854)
T 1qvr_A 432 LKAIEAEIAKLTEEIAKLRAEWERE 456 (854)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 211
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=21.17 E-value=3e+02 Score=21.59 Aligned_cols=31 Identities=19% Similarity=0.400 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHH-------HHHHHhhhhhhhhHHHH
Q 025912 73 VALKQELSLAEQEL-------RHLSSVAASVKAERDAE 103 (246)
Q Consensus 73 vaLrQeL~aaq~El-------~~l~~~i~~i~aE~e~q 103 (246)
.+|++||+.++.++ .-|+..+..+..|+|-+
T Consensus 7 ~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFY 44 (106)
T 4e61_A 7 VAIQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFY 44 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555544 44455555555666554
No 212
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=21.08 E-value=1.5e+02 Score=28.61 Aligned_cols=33 Identities=21% Similarity=0.197 Sum_probs=18.4
Q ss_pred HHHHHHHHhhHHHH-----HHHHHHHHHHHHHHHHHHH
Q 025912 56 SDIQSLLQDNQRLA-----ATHVALKQELSLAEQELRH 88 (246)
Q Consensus 56 ~EiqrLl~dNqRLA-----atHvaLrQeL~aaq~El~~ 88 (246)
.-|-.|..+|..|- .++..+.|==+.|++|=.+
T Consensus 278 k~i~~lc~~~H~ff~~~r~~d~~e~qqm~~~a~e~~~~ 315 (575)
T 2i1j_A 278 KRILALCMGNHELYMRRRKPDTIDVQQMKAQAREEKLA 315 (575)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHH
Confidence 33555566665553 4556666666666665444
No 213
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=21.04 E-value=1.2e+02 Score=22.84 Aligned_cols=30 Identities=20% Similarity=0.255 Sum_probs=22.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhHhhh
Q 025912 199 EQREIMEKNIISVAQQIERLQAELANAEKR 228 (246)
Q Consensus 199 Eq~qaMEkNlisMarEvEKLRaElanaEkR 228 (246)
|-.|.+--|++++-++|+.|..+|..+-.+
T Consensus 30 ~~~~~~~~~~~~~EKTIDDLEDkL~~eKEK 59 (77)
T 3mtu_E 30 EALQQLRVNYGSFVSEYNDLEEKVAHAKEE 59 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 334444559999999999999998665443
No 214
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=20.82 E-value=3.9e+02 Score=22.67 Aligned_cols=31 Identities=23% Similarity=0.325 Sum_probs=14.3
Q ss_pred HHHHHHHHHhhhhhhh---hHHHHHHHHHHHhhh
Q 025912 83 EQELRHLSSVAASVKA---ERDAEVRELYEKSLK 113 (246)
Q Consensus 83 q~El~~l~~~i~~i~a---E~e~qiReL~ek~~K 113 (246)
+.+|+.+-.....++. .+=.|+|+.+|++.-
T Consensus 36 k~~l~~~e~~r~k~~~h~~~k~~qlre~~d~gtt 69 (169)
T 3k29_A 36 QEKLRERESERDKVKNHYMQKIRQLREQLDDGTT 69 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4444444333333332 234566666665443
No 215
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=20.71 E-value=2.3e+02 Score=25.85 Aligned_cols=11 Identities=18% Similarity=0.135 Sum_probs=4.7
Q ss_pred HHHhhhhHHhh
Q 025912 108 YEKSLKLDAEL 118 (246)
Q Consensus 108 ~ek~~KmEAel 118 (246)
..|+.+|..++
T Consensus 4 ~~~~~~~~~~~ 14 (323)
T 1lwu_C 4 QKTVQKILEEV 14 (323)
T ss_dssp -CHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34445554443
No 216
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=20.68 E-value=1.6e+02 Score=19.97 Aligned_cols=16 Identities=13% Similarity=0.414 Sum_probs=9.8
Q ss_pred HHHHHHHhHHHHHHHH
Q 025912 200 QREIMEKNIISVAQQI 215 (246)
Q Consensus 200 q~qaMEkNlisMarEv 215 (246)
..|++||.+.++-.-+
T Consensus 28 elqalekklaalkskl 43 (48)
T 1g6u_A 28 ELQALEKKLAALKSKL 43 (48)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3567777776665443
No 217
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=20.59 E-value=5.1e+02 Score=23.94 Aligned_cols=147 Identities=13% Similarity=0.210 Sum_probs=0.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-----------hhhHHHHHHHHHHHhhhhHHhhhchhhHHH
Q 025912 58 IQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASV-----------KAERDAEVRELYEKSLKLDAELRVIESMHA 126 (246)
Q Consensus 58 iqrLl~dNqRLAatHvaLrQeL~aaq~El~~l~~~i~~i-----------~aE~e~qiReL~ek~~KmEAelRa~e~lk~ 126 (246)
...++.+..++|..|..+-+.|. .+-+..|+..+.+. +-+-+..+..+.....+...+ ++-.|+
T Consensus 83 w~~~~~e~e~~a~~H~~~a~~L~--~~v~~~l~~~~~e~~~K~~~~~~kerK~~~~~~~k~qk~l~~~~~~---l~KaKk 157 (486)
T 3haj_A 83 WMAFMSEAERVSELHLEVKASLM--NDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKE---VEAAKK 157 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HTHHHHHHHHHHHHCCBCSSSSBHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccchhH
Q 025912 127 ELDRVRADIEKLCVIKQEM-------IKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHE 199 (246)
Q Consensus 127 El~Q~r~e~q~L~a~RQEL-------s~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~E 199 (246)
.-.+.-.|+......-+.. ..++..+...+.+++..++.. +.+-...-+.+...| -+|+ ..-...++
T Consensus 158 ~Y~~~cke~e~a~~~~~~a~~d~~~t~k~~eK~~~k~~k~~~~~~~a---~~~Y~~~v~~~n~~~--~~y~-~~~~~~~~ 231 (486)
T 3haj_A 158 AHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKT---KEKYEKSLKELDQGT--PQYM-ENMEQVFE 231 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCSCSHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHTTS--HHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH--HHHH-HHHHHHHH
Q ss_pred HHHHHHHhHHHHHHHH
Q 025912 200 QREIMEKNIISVAQQI 215 (246)
Q Consensus 200 q~qaMEkNlisMarEv 215 (246)
+.|.||..-|..-+++
T Consensus 232 ~lQ~lEeeRi~~lK~~ 247 (486)
T 3haj_A 232 QCQQFEEKRLRFFREV 247 (486)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
No 218
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=20.43 E-value=21 Score=33.12 Aligned_cols=73 Identities=21% Similarity=0.345 Sum_probs=0.0
Q ss_pred HHHHHHhhhhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhh
Q 025912 105 RELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGR 184 (246)
Q Consensus 105 ReL~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~R 184 (246)
++...+..+||++|+.+= .+||+.+-++|...-++|..+...+.++|.... .+|+..+.+|..-+
T Consensus 325 ~~~~~~~~~~e~~~~~~f-----~~~v~~~~~~~~~~e~~l~~~~~~~~~~l~~~~----------~~l~~~~~~~~~~~ 389 (418)
T 2qag_C 325 REHVAKMKKMEMEMEQVF-----EMKVKEKVQKLKDSEAELQRRHEQMKKNLEAQH----------KELEEKRRQFEDEK 389 (418)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH
Confidence 334556667777766532 145666777777777777777666666665533 45556666666666
Q ss_pred hhhhhhcc
Q 025912 185 AAIECEKK 192 (246)
Q Consensus 185 aa~EyEKK 192 (246)
++|+.++.
T Consensus 390 ~~~~~~~~ 397 (418)
T 2qag_C 390 ANWEAQQR 397 (418)
T ss_dssp --------
T ss_pred HHHHHHhh
Confidence 66655543
No 219
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=20.37 E-value=3e+02 Score=21.29 Aligned_cols=66 Identities=12% Similarity=0.223 Sum_probs=38.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhhh---------hhhHHHHHHHHHHHHHHHhhhhh
Q 025912 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEIN--GDLAKARDES---------KDMAAIKAEIETERQEIHKGRAA 186 (246)
Q Consensus 121 ~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~lt--qeL~r~~~d~---------qqip~l~aEid~lrqElqr~Raa 186 (246)
++.+|.++..++.|..+|-....+|-.++-..+ .|......-+ .-.-..+.+++.|+.|+.++|.-
T Consensus 14 ~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~ 90 (100)
T 1go4_E 14 ADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGL 90 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777888888888888888888877776622 2322111000 00112345677777777777654
No 220
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=20.26 E-value=3.2e+02 Score=21.49 Aligned_cols=51 Identities=20% Similarity=0.258 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhHHhhhchhhHHHH
Q 025912 77 QELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAE 127 (246)
Q Consensus 77 QeL~aaq~El~~l~~~i~~i~aE~e~qiReL~ek~~KmEAelRa~e~lk~E 127 (246)
++|..+-++|.|-.-+...-=.+-|..+-..|++.+-||.||..-+.|+..
T Consensus 59 ReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE~El~EKe~L~~~ 109 (111)
T 2v66_B 59 RELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELDEKESLLVS 109 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555556655555554444556666677788888888887766666543
No 221
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=20.19 E-value=1.8e+02 Score=22.14 Aligned_cols=37 Identities=30% Similarity=0.324 Sum_probs=0.0
Q ss_pred HhHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 025912 45 HHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSL 81 (246)
Q Consensus 45 ~~LEe~La~Q~~EiqrLl~dNqRLAatHvaLrQeL~a 81 (246)
..||.....-..|+..|..+|.++..+.-++++-+.+
T Consensus 51 ~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~ 87 (90)
T 2wt7_B 51 HHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEK 87 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 222
>3rmi_A Chorismate mutase protein; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid; 2.40A {Bartonella henselae}
Probab=20.18 E-value=2.1e+02 Score=21.96 Aligned_cols=35 Identities=3% Similarity=0.174 Sum_probs=26.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGD 155 (246)
Q Consensus 121 ~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqe 155 (246)
.+.+|.++..+-.++-.|.+.|-.++.+|-.+.++
T Consensus 14 L~~lR~~ID~ID~~il~LL~~R~~~~~~I~~~K~~ 48 (114)
T 3rmi_A 14 LAYLRQSIDNFDITLIHILAERFRCTQAIGRLKAR 48 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888888888888888877766643
No 223
>1ecm_A Endo-oxabicyclic transition state analogue; P-protein, chorismate mutase domain, chorismate mutase; HET: TSA; 2.20A {Escherichia coli} SCOP: a.130.1.1
Probab=20.00 E-value=2.2e+02 Score=21.14 Aligned_cols=35 Identities=6% Similarity=0.152 Sum_probs=29.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025912 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGD 155 (246)
Q Consensus 121 ~e~lk~El~Q~r~e~q~L~a~RQELs~qvq~ltqe 155 (246)
.+.+|.++..+-.++-.|.+.|-.++.+|-.+..+
T Consensus 7 L~~lR~~ID~iD~~L~~LL~~R~~~~~~v~~~K~~ 41 (109)
T 1ecm_A 7 LLALREKISALDEKLLALLAERRELAVEVGKAKLL 41 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888889999999998888777665
Done!