Query 025916
Match_columns 246
No_of_seqs 212 out of 1505
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 11:01:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025916.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025916hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0840 ATP-dependent Clp prot 100.0 9.9E-63 2.1E-67 436.4 14.8 186 34-228 60-258 (275)
2 COG0740 ClpP Protease subunit 100.0 9.9E-61 2.2E-65 414.0 17.2 182 40-231 3-196 (200)
3 PRK12552 ATP-dependent Clp pro 100.0 1.4E-57 3E-62 401.1 18.7 176 54-229 19-216 (222)
4 PRK14514 ATP-dependent Clp pro 100.0 2.8E-56 6E-61 393.0 17.9 181 38-228 28-220 (221)
5 PRK14513 ATP-dependent Clp pro 100.0 4E-56 8.6E-61 387.2 18.5 182 40-231 3-196 (201)
6 PRK12551 ATP-dependent Clp pro 100.0 3.5E-54 7.6E-59 373.8 17.5 178 41-228 2-191 (196)
7 CHL00028 clpP ATP-dependent Cl 100.0 2E-53 4.4E-58 370.0 17.9 167 54-228 19-197 (200)
8 TIGR00493 clpP ATP-dependent C 100.0 4.7E-49 1E-53 340.0 17.4 177 41-227 3-191 (191)
9 PRK14512 ATP-dependent Clp pro 100.0 1.3E-47 2.8E-52 332.8 16.8 167 54-228 12-189 (197)
10 PRK00277 clpP ATP-dependent Cl 100.0 5.1E-47 1.1E-51 329.4 17.9 180 40-229 7-198 (200)
11 PRK12553 ATP-dependent Clp pro 100.0 1.6E-45 3.6E-50 321.6 16.8 180 41-230 12-205 (207)
12 PF00574 CLP_protease: Clp pro 100.0 2.5E-45 5.4E-50 311.8 10.9 167 54-228 5-182 (182)
13 cd07017 S14_ClpP_2 Caseinolyti 100.0 1.1E-43 2.3E-48 300.8 14.3 160 57-224 1-171 (171)
14 cd07013 S14_ClpP Caseinolytic 100.0 1.7E-42 3.6E-47 291.7 16.4 150 67-224 9-162 (162)
15 cd07016 S14_ClpP_1 Caseinolyti 100.0 4.8E-31 1E-35 219.9 17.2 145 70-224 15-160 (160)
16 cd07015 Clp_protease_NfeD Nodu 100.0 2.1E-29 4.5E-34 214.8 14.8 142 71-228 14-166 (172)
17 cd00394 Clp_protease_like Case 99.9 8.6E-27 1.9E-31 193.5 15.2 148 67-224 8-161 (161)
18 cd07020 Clp_protease_NfeD_1 No 99.9 4.6E-24 9.9E-29 183.0 15.7 149 69-228 12-166 (187)
19 cd07021 Clp_protease_NfeD_like 99.9 7.4E-21 1.6E-25 162.9 15.1 143 71-228 14-172 (178)
20 cd07014 S49_SppA Signal peptid 99.7 7.1E-16 1.5E-20 130.7 14.6 140 71-227 23-169 (177)
21 TIGR00706 SppA_dom signal pept 99.7 1.8E-15 3.9E-20 131.7 15.8 146 72-228 15-196 (207)
22 cd07023 S49_Sppa_N_C Signal pe 99.6 2.5E-15 5.5E-20 130.4 14.0 147 70-227 17-200 (208)
23 cd07022 S49_Sppa_36K_type Sign 99.6 1.5E-14 3.3E-19 126.4 15.6 147 70-228 25-207 (214)
24 TIGR00705 SppA_67K signal pept 99.6 1.2E-14 2.7E-19 144.2 15.8 143 73-226 332-510 (584)
25 cd07019 S49_SppA_1 Signal pept 99.6 1.3E-13 2.9E-18 120.3 16.3 145 73-228 24-204 (211)
26 COG0616 SppA Periplasmic serin 99.6 6.9E-14 1.5E-18 129.5 14.1 145 74-229 87-264 (317)
27 cd07018 S49_SppA_67K_type Sign 99.4 1.6E-12 3.5E-17 114.3 13.7 148 69-228 28-214 (222)
28 PRK10949 protease 4; Provision 99.4 1.9E-12 4.1E-17 129.4 15.6 145 73-228 350-530 (618)
29 PRK11778 putative inner membra 99.3 1E-10 2.2E-15 109.2 16.3 143 73-228 111-287 (330)
30 PF01972 SDH_sah: Serine dehyd 99.1 2.6E-09 5.7E-14 97.2 14.9 151 58-220 63-241 (285)
31 PF01343 Peptidase_S49: Peptid 99.0 6.2E-09 1.3E-13 86.7 11.2 109 117-228 3-141 (154)
32 COG1030 NfeD Membrane-bound se 99.0 6.7E-09 1.5E-13 99.6 12.2 150 63-227 33-188 (436)
33 TIGR00705 SppA_67K signal pept 98.7 1.9E-07 4.1E-12 93.2 14.0 148 70-228 76-270 (584)
34 PRK10949 protease 4; Provision 98.5 1.4E-06 3E-11 87.6 13.7 147 71-228 96-289 (618)
35 PLN03230 acetyl-coenzyme A car 98.2 6.4E-06 1.4E-10 79.1 9.9 123 80-231 217-341 (431)
36 cd06558 crotonase-like Crotona 98.2 2.2E-05 4.7E-10 66.3 11.9 102 107-227 80-181 (195)
37 PRK05724 acetyl-CoA carboxylas 98.2 2.2E-05 4.7E-10 73.3 12.0 123 80-231 147-271 (319)
38 PRK12319 acetyl-CoA carboxylas 98.2 1.1E-05 2.4E-10 73.1 9.6 120 80-228 94-215 (256)
39 TIGR00513 accA acetyl-CoA carb 98.2 1.4E-05 3E-10 74.6 10.2 123 80-231 147-271 (316)
40 TIGR03134 malonate_gamma malon 98.1 4.4E-05 9.6E-10 68.6 11.5 122 82-230 64-192 (238)
41 CHL00198 accA acetyl-CoA carbo 98.1 3.7E-05 8E-10 71.8 10.9 119 80-230 150-273 (322)
42 PRK08258 enoyl-CoA hydratase; 97.8 0.00019 4.1E-09 65.1 10.8 99 111-228 104-203 (277)
43 PRK06213 enoyl-CoA hydratase; 97.8 0.00017 3.7E-09 63.4 9.9 101 109-228 80-181 (229)
44 PLN03229 acetyl-coenzyme A car 97.8 0.00017 3.8E-09 73.4 10.9 123 80-231 238-362 (762)
45 PRK05869 enoyl-CoA hydratase; 97.8 0.00017 3.7E-09 63.5 9.3 98 111-228 90-188 (222)
46 PRK03580 carnitinyl-CoA dehydr 97.7 0.00023 5E-09 63.9 10.0 100 110-228 84-183 (261)
47 PF00378 ECH: Enoyl-CoA hydrat 97.7 0.00024 5.2E-09 62.8 9.9 104 107-229 77-180 (245)
48 PRK06495 enoyl-CoA hydratase; 97.7 0.00017 3.6E-09 64.6 8.8 96 111-228 88-183 (257)
49 PRK08150 enoyl-CoA hydratase; 97.7 0.00031 6.6E-09 63.0 10.4 99 110-228 82-181 (255)
50 PRK07511 enoyl-CoA hydratase; 97.7 0.00036 7.9E-09 62.4 10.6 99 110-228 88-187 (260)
51 PRK06127 enoyl-CoA hydratase; 97.7 0.00027 5.9E-09 63.8 9.2 98 112-228 98-195 (269)
52 PRK05980 enoyl-CoA hydratase; 97.6 0.00026 5.6E-09 63.4 8.9 99 111-228 91-189 (260)
53 PRK06688 enoyl-CoA hydratase; 97.6 0.0003 6.5E-09 62.8 9.3 101 109-228 85-185 (259)
54 PRK05981 enoyl-CoA hydratase; 97.6 0.00023 5.1E-09 63.9 8.6 99 111-228 94-192 (266)
55 PRK06210 enoyl-CoA hydratase; 97.6 0.00023 5E-09 64.1 8.5 97 112-228 100-197 (272)
56 PRK09674 enoyl-CoA hydratase-i 97.6 0.00044 9.5E-09 61.9 9.3 99 111-228 83-181 (255)
57 PRK08139 enoyl-CoA hydratase; 97.6 0.00051 1.1E-08 62.0 9.8 98 111-228 95-192 (266)
58 PRK09076 enoyl-CoA hydratase; 97.6 0.00057 1.2E-08 61.3 9.9 97 111-228 86-184 (258)
59 PRK11423 methylmalonyl-CoA dec 97.5 0.00041 9E-09 62.4 8.7 99 111-228 87-185 (261)
60 PRK07658 enoyl-CoA hydratase; 97.5 0.00052 1.1E-08 61.3 9.3 99 110-228 84-183 (257)
61 PRK07260 enoyl-CoA hydratase; 97.5 0.00019 4.2E-09 64.1 6.5 99 111-228 89-187 (255)
62 PRK06143 enoyl-CoA hydratase; 97.5 0.00073 1.6E-08 60.6 10.2 99 110-228 90-188 (256)
63 PRK07938 enoyl-CoA hydratase; 97.5 0.0004 8.8E-09 62.0 8.5 96 111-228 85-180 (249)
64 PRK07509 enoyl-CoA hydratase; 97.5 0.00046 9.9E-09 61.8 8.5 96 112-226 94-189 (262)
65 PRK07657 enoyl-CoA hydratase; 97.5 0.00055 1.2E-08 61.4 9.0 97 111-228 88-186 (260)
66 PRK06190 enoyl-CoA hydratase; 97.5 0.00066 1.4E-08 61.2 9.5 100 110-228 84-183 (258)
67 PRK09245 enoyl-CoA hydratase; 97.5 0.00057 1.2E-08 61.4 8.9 99 111-228 94-192 (266)
68 PRK06563 enoyl-CoA hydratase; 97.5 0.00063 1.4E-08 60.8 9.1 94 115-228 87-181 (255)
69 PRK07110 polyketide biosynthes 97.5 0.00093 2E-08 59.6 10.2 99 111-228 85-183 (249)
70 PRK06023 enoyl-CoA hydratase; 97.5 0.0005 1.1E-08 61.4 8.4 98 111-228 88-186 (251)
71 PLN02664 enoyl-CoA hydratase/d 97.5 0.00057 1.2E-08 61.9 8.7 98 111-227 102-199 (275)
72 PRK08260 enoyl-CoA hydratase; 97.5 0.00067 1.5E-08 62.1 9.2 99 111-228 104-202 (296)
73 PRK09120 p-hydroxycinnamoyl Co 97.5 0.00072 1.6E-08 61.4 9.1 97 111-228 95-193 (275)
74 PRK06142 enoyl-CoA hydratase; 97.5 0.0009 1.9E-08 60.4 9.7 98 111-227 100-197 (272)
75 PLN02921 naphthoate synthase 97.4 0.001 2.2E-08 62.3 10.3 96 112-228 153-250 (327)
76 PLN02888 enoyl-CoA hydratase 97.4 0.00075 1.6E-08 60.9 9.1 99 111-228 90-188 (265)
77 PRK05862 enoyl-CoA hydratase; 97.4 0.00077 1.7E-08 60.3 8.9 99 111-228 85-183 (257)
78 PRK07396 dihydroxynaphthoic ac 97.4 0.0012 2.7E-08 59.7 10.2 97 111-228 98-196 (273)
79 PRK05809 3-hydroxybutyryl-CoA 97.4 0.00075 1.6E-08 60.4 8.7 98 111-227 88-185 (260)
80 PRK08138 enoyl-CoA hydratase; 97.4 0.00096 2.1E-08 59.9 9.4 98 111-228 89-187 (261)
81 TIGR02280 PaaB1 phenylacetate 97.4 0.00067 1.5E-08 60.7 8.3 98 112-228 85-182 (256)
82 PRK06494 enoyl-CoA hydratase; 97.4 0.0013 2.8E-08 59.0 10.1 94 116-228 90-183 (259)
83 COG3904 Predicted periplasmic 97.4 0.00088 1.9E-08 59.3 8.5 138 73-223 91-236 (245)
84 PRK07854 enoyl-CoA hydratase; 97.4 0.0011 2.3E-08 59.1 9.3 97 110-225 76-172 (243)
85 PRK05995 enoyl-CoA hydratase; 97.4 0.001 2.2E-08 59.7 9.2 97 111-227 90-186 (262)
86 PRK08290 enoyl-CoA hydratase; 97.4 0.0009 2E-08 61.2 8.9 97 111-228 109-205 (288)
87 PRK06144 enoyl-CoA hydratase; 97.4 0.001 2.2E-08 59.8 9.0 100 111-228 93-192 (262)
88 TIGR03210 badI 2-ketocyclohexa 97.4 0.0012 2.5E-08 59.2 9.4 97 111-228 85-183 (256)
89 PRK07468 enoyl-CoA hydratase; 97.4 0.00098 2.1E-08 59.9 8.8 97 112-228 92-188 (262)
90 PRK07112 polyketide biosynthes 97.4 0.0013 2.7E-08 59.0 9.4 97 111-227 87-183 (255)
91 TIGR01929 menB naphthoate synt 97.4 0.0014 3.1E-08 58.8 9.7 97 111-228 88-186 (259)
92 PRK08140 enoyl-CoA hydratase; 97.3 0.0011 2.4E-08 59.4 8.9 97 112-228 91-188 (262)
93 PLN03214 probable enoyl-CoA hy 97.3 0.0011 2.5E-08 60.2 9.1 99 112-228 99-197 (278)
94 PLN02600 enoyl-CoA hydratase 97.3 0.0011 2.4E-08 59.3 8.7 99 111-228 79-177 (251)
95 PRK07327 enoyl-CoA hydratase; 97.3 0.0012 2.5E-08 59.6 8.8 98 111-228 97-195 (268)
96 PRK05864 enoyl-CoA hydratase; 97.3 0.0011 2.5E-08 59.9 8.3 100 111-228 100-199 (276)
97 TIGR03189 dienoyl_CoA_hyt cycl 97.3 0.0013 2.9E-08 58.8 8.4 97 111-227 80-176 (251)
98 PRK07659 enoyl-CoA hydratase; 97.2 0.00093 2E-08 59.9 7.3 92 112-225 90-184 (260)
99 COG1024 CaiD Enoyl-CoA hydrata 97.2 0.0019 4.2E-08 57.7 9.2 96 112-228 90-187 (257)
100 PRK07799 enoyl-CoA hydratase; 97.2 0.0015 3.2E-08 58.7 8.4 93 116-228 96-189 (263)
101 PRK08788 enoyl-CoA hydratase; 97.2 0.0032 7E-08 57.9 10.6 92 118-228 119-210 (287)
102 COG0825 AccA Acetyl-CoA carbox 97.2 0.0018 4E-08 59.8 8.4 124 80-235 146-274 (317)
103 PRK08259 enoyl-CoA hydratase; 97.2 0.002 4.4E-08 57.7 8.6 92 118-228 91-182 (254)
104 PRK06072 enoyl-CoA hydratase; 97.2 0.0023 5E-08 57.1 8.9 94 111-224 80-173 (248)
105 PRK12478 enoyl-CoA hydratase; 97.2 0.0021 4.6E-08 59.1 8.9 94 112-228 104-198 (298)
106 TIGR03200 dearomat_oah 6-oxocy 97.2 0.0036 7.8E-08 59.5 10.5 99 111-230 115-215 (360)
107 PRK08252 enoyl-CoA hydratase; 97.1 0.0026 5.7E-08 56.9 8.7 92 118-228 89-180 (254)
108 PRK05674 gamma-carboxygeranoyl 97.0 0.004 8.7E-08 56.1 9.4 97 111-227 92-188 (265)
109 PRK05870 enoyl-CoA hydratase; 97.0 0.0016 3.4E-08 58.2 6.1 93 112-225 87-181 (249)
110 PRK08272 enoyl-CoA hydratase; 97.0 0.0048 1E-07 56.7 9.5 95 111-227 118-212 (302)
111 PLN02267 enoyl-CoA hydratase/i 97.0 0.008 1.7E-07 53.5 10.5 97 112-227 86-184 (239)
112 TIGR01117 mmdA methylmalonyl-C 97.0 0.0014 3.1E-08 64.8 6.1 133 80-228 346-482 (512)
113 KOG1680 Enoyl-CoA hydratase [L 97.0 0.0063 1.4E-07 55.9 9.8 99 110-230 117-218 (290)
114 PLN02820 3-methylcrotonyl-CoA 96.9 0.0012 2.6E-08 66.1 5.2 140 81-228 398-541 (569)
115 PRK08184 benzoyl-CoA-dihydrodi 96.9 0.0033 7.1E-08 62.8 8.3 101 112-228 115-217 (550)
116 PRK08321 naphthoate synthase; 96.9 0.0067 1.5E-07 55.9 9.7 97 112-228 127-225 (302)
117 PRK07827 enoyl-CoA hydratase; 96.9 0.0042 9.1E-08 55.7 7.8 96 111-226 92-187 (260)
118 PLN02874 3-hydroxyisobutyryl-C 96.7 0.011 2.4E-07 56.4 10.1 95 114-228 99-193 (379)
119 PRK11730 fadB multifunctional 96.7 0.011 2.4E-07 60.6 10.2 99 111-228 93-191 (715)
120 PLN02157 3-hydroxyisobutyryl-C 96.6 0.017 3.7E-07 55.6 10.1 95 114-228 127-221 (401)
121 TIGR03222 benzo_boxC benzoyl-C 96.5 0.012 2.7E-07 58.7 9.1 101 112-228 111-213 (546)
122 TIGR02437 FadB fatty oxidation 96.5 0.015 3.3E-07 59.7 10.0 99 109-227 91-190 (714)
123 TIGR03222 benzo_boxC benzoyl-C 96.5 0.011 2.3E-07 59.2 8.5 100 112-228 357-466 (546)
124 PRK11154 fadJ multifunctional 96.5 0.015 3.2E-07 59.7 9.6 98 111-228 92-192 (708)
125 TIGR02440 FadJ fatty oxidation 96.5 0.016 3.5E-07 59.3 9.8 99 110-228 86-187 (699)
126 PRK05617 3-hydroxyisobutyryl-C 96.5 0.005 1.1E-07 57.8 5.7 94 112-228 92-188 (342)
127 PLN02988 3-hydroxyisobutyryl-C 96.4 0.023 5.1E-07 54.3 9.6 95 114-228 99-193 (381)
128 PF01039 Carboxyl_trans: Carbo 96.3 0.0032 6.9E-08 61.9 3.3 134 83-228 328-465 (493)
129 PLN02851 3-hydroxyisobutyryl-C 96.1 0.033 7.3E-07 53.8 9.2 95 115-229 133-227 (407)
130 TIGR02441 fa_ox_alpha_mit fatt 96.1 0.028 6.1E-07 58.0 9.1 97 110-227 98-198 (737)
131 PF06833 MdcE: Malonate decarb 96.1 0.036 7.8E-07 49.9 8.7 125 71-227 51-187 (234)
132 PRK08184 benzoyl-CoA-dihydrodi 95.5 0.035 7.7E-07 55.5 7.1 97 112-228 361-470 (550)
133 PRK05654 acetyl-CoA carboxylas 94.4 0.26 5.7E-06 45.6 9.1 106 80-228 152-267 (292)
134 TIGR00515 accD acetyl-CoA carb 93.9 0.3 6.5E-06 45.2 8.4 112 80-228 151-266 (285)
135 COG4799 Acetyl-CoA carboxylase 93.7 0.14 3E-06 51.1 6.1 139 78-228 353-495 (526)
136 KOG1681 Enoyl-CoA isomerase [L 92.1 0.066 1.4E-06 48.5 1.2 102 110-229 116-217 (292)
137 KOG1682 Enoyl-CoA isomerase [L 91.1 0.15 3.2E-06 45.6 2.2 98 112-229 117-214 (287)
138 TIGR03133 malonate_beta malona 84.1 3.1 6.8E-05 38.3 6.5 67 85-161 100-177 (274)
139 PRK07189 malonate decarboxylas 83.6 2.7 5.9E-05 39.3 5.9 73 85-161 109-186 (301)
140 KOG0016 Enoyl-CoA hydratase/is 76.7 4.6 0.0001 37.1 4.9 97 112-227 99-195 (266)
141 KOG1679 Enoyl-CoA hydratase [L 71.9 4.3 9.3E-05 36.8 3.4 115 106-244 110-228 (291)
142 COG0447 MenB Dihydroxynaphthoi 66.5 8.5 0.00018 34.9 4.1 97 110-229 106-206 (282)
143 PF06972 DUF1296: Protein of u 51.7 24 0.00053 25.4 3.6 34 184-218 7-41 (60)
144 PLN02820 3-methylcrotonyl-CoA 48.8 78 0.0017 32.2 8.0 79 80-160 160-244 (569)
145 TIGR01117 mmdA methylmalonyl-C 41.9 76 0.0016 31.7 6.6 77 80-160 113-193 (512)
146 PF00681 Plectin: Plectin repe 38.3 17 0.00037 24.0 1.0 19 205-223 17-35 (45)
147 CHL00174 accD acetyl-CoA carbo 34.6 1.7E+02 0.0037 27.4 7.4 111 80-228 164-280 (296)
148 PF01039 Carboxyl_trans: Carbo 34.2 58 0.0012 32.2 4.4 71 83-161 91-171 (493)
149 PF01381 HTH_3: Helix-turn-hel 32.5 83 0.0018 20.6 3.8 32 186-217 12-43 (55)
150 smart00250 PLEC Plectin repeat 30.7 36 0.00079 21.5 1.6 19 206-224 18-36 (38)
151 COG4710 Predicted DNA-binding 30.6 61 0.0013 24.4 3.0 34 181-217 16-57 (80)
152 TIGR03070 couple_hipB transcri 30.2 1.2E+02 0.0027 19.5 4.3 32 185-216 17-48 (58)
153 PHA00099 minor capsid protein 29.2 2.6E+02 0.0057 23.3 6.7 53 167-221 59-114 (147)
154 PF00216 Bac_DNA_binding: Bact 29.1 62 0.0014 23.6 2.9 37 182-219 3-39 (90)
155 TIGR01729 taurine_ABC_bnd taur 28.9 2E+02 0.0043 25.6 6.7 31 185-215 226-256 (300)
156 smart00411 BHL bacterial (prok 28.4 70 0.0015 23.5 3.1 37 182-219 3-39 (90)
157 TIGR02763 chlamy_scaf chlamydi 26.8 3.1E+02 0.0068 22.0 6.5 56 167-224 29-87 (114)
158 TIGR00987 himA integration hos 25.4 83 0.0018 23.8 3.1 37 182-219 4-40 (96)
159 COG0757 AroQ 3-dehydroquinate 25.3 1.6E+02 0.0036 24.8 4.9 33 89-130 70-102 (146)
160 KOG0540 3-Methylcrotonyl-CoA c 25.2 1.9E+02 0.0041 29.0 6.1 57 81-138 381-439 (536)
161 TIGR03427 ABC_peri_uca ABC tra 25.2 1.4E+02 0.003 27.9 5.1 36 183-218 226-262 (328)
162 PRK10753 transcriptional regul 24.3 91 0.002 23.5 3.1 37 182-219 3-39 (90)
163 PF07027 DUF1318: Protein of u 24.0 2.5E+02 0.0053 21.8 5.5 38 167-204 34-71 (95)
164 PRK09726 antitoxin HipB; Provi 23.8 2.1E+02 0.0045 21.1 5.0 57 168-224 10-70 (88)
165 TIGR02635 RhaI_grampos L-rhamn 22.9 6.9E+02 0.015 24.1 10.4 119 70-220 219-339 (378)
166 COG0074 SucD Succinyl-CoA synt 22.4 3.4E+02 0.0073 25.5 6.9 69 69-156 185-254 (293)
167 cd00591 HU_IHF Integration hos 22.1 1.1E+02 0.0023 22.3 3.0 37 182-219 2-38 (87)
168 PF04110 APG12: Ubiquitin-like 21.3 99 0.0021 23.7 2.7 47 78-133 38-87 (87)
169 PF14566 PTPlike_phytase: Inos 20.7 1.2E+02 0.0026 24.8 3.4 40 71-117 110-149 (149)
170 PF14117 DUF4287: Domain of un 20.5 1.6E+02 0.0035 21.1 3.5 33 184-216 4-37 (61)
171 COG0034 PurF Glutamine phospho 20.4 1E+02 0.0022 30.7 3.2 34 62-95 353-387 (470)
172 TIGR02675 tape_meas_nterm tape 20.3 2.4E+02 0.0052 20.6 4.6 29 184-213 45-73 (75)
173 PF03572 Peptidase_S41: Peptid 20.1 3.8E+02 0.0082 21.2 6.2 60 74-141 22-111 (169)
174 PRK14500 putative bifunctional 20.1 40 0.00087 31.9 0.4 45 106-151 122-177 (346)
No 1
>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.9e-63 Score=436.41 Aligned_cols=186 Identities=44% Similarity=0.633 Sum_probs=175.1
Q ss_pred Ccccccccc-ccc-cCCCCCCCCCCCccccccCCCCC-------CCchhHHHHHH----hhCCCCCEEEEEcCCCCCCCC
Q 025916 34 NLSTSFISP-FAN-GSVSSDFSGLRLRPDCLNPDSFC-------KSKPRSPVITM----YEDVEKPIYLYINSTGTTKGG 100 (246)
Q Consensus 34 ~~~~~~~~p-~~~-~~~~~~~~~~~di~s~Ll~~RIi-------~~~a~~iiaqL----~ed~~k~I~LyINSpG~~~~~ 100 (246)
+......+| +++ +..+| +.+|+|||++||++||| |++++++++|| ++|++|||+|||||||
T Consensus 60 ~~~~~~~~p~~~~~~~~rG-~~~~~Di~s~LlreRIi~lg~~Idd~va~~viaqlL~Ld~ed~~K~I~lyINSPG----- 133 (275)
T KOG0840|consen 60 SLRAPILVPRFPIESPGRG-RERPYDIYSRLLRERIVFLGQPIDDDVANLVIAQLLYLDSEDPKKPIYLYINSPG----- 133 (275)
T ss_pred cccccccCCcceeeccccC-CCCcccHHHHHHHhheeeeCCcCcHHHHHHHHHHHHHhhccCCCCCeEEEEeCCC-----
Confidence 566678889 444 56667 22459999999999999 88999999999 7899999999999999
Q ss_pred CCCchHHHHHHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHH
Q 025916 101 EKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKN 180 (246)
Q Consensus 101 ~~~G~v~~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~ 180 (246)
|++++|+||||+|+++++||.|+|+|+|||||++||++|+||+||++|||++|||||.+++.||+.|+.++++|+.+
T Consensus 134 ---G~vtaglAIYDtMq~ik~~V~Tic~G~Aas~aalLLaaG~KG~R~alPnsriMIhQP~gga~Gqa~Di~i~akE~~~ 210 (275)
T KOG0840|consen 134 ---GSVTAGLAIYDTMQYIKPDVSTICVGLAASMAALLLAAGAKGKRYALPNSRIMIHQPSGGAGGQATDIVIQAKELMR 210 (275)
T ss_pred ---CccchhhhHHHHHHhhCCCceeeehhhHHhHHHHHHhcCCCcceeecCCceeEEeccCCCcCccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 181 VKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 181 ~~~~i~~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
.++.+.++|++|||+|.|+|.++|+||+||+|+||+||||||+|++.+
T Consensus 211 ~k~~l~~i~a~~Tgq~~e~i~~d~dRd~fmsa~EA~eyGliD~v~~~p 258 (275)
T KOG0840|consen 211 IKEYLNEIYAKHTGQPLEVIEKDMDRDRFMSAEEAKEYGLIDKVIDHP 258 (275)
T ss_pred HHHHHHHHHHHhcCCcHHHHHhhhcccccCCHHHHHHhcchhhhhcCC
Confidence 999999999999999999999999999999999999999999999864
No 2
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=100.00 E-value=9.9e-61 Score=413.98 Aligned_cols=182 Identities=41% Similarity=0.638 Sum_probs=174.3
Q ss_pred cccccc-cCCCCCCCCCCCccccccCCCCC-------CCchhHHHHHH----hhCCCCCEEEEEcCCCCCCCCCCCchHH
Q 025916 40 ISPFAN-GSVSSDFSGLRLRPDCLNPDSFC-------KSKPRSPVITM----YEDVEKPIYLYINSTGTTKGGEKLGYET 107 (246)
Q Consensus 40 ~~p~~~-~~~~~~~~~~~di~s~Ll~~RIi-------~~~a~~iiaqL----~ed~~k~I~LyINSpG~~~~~~~~G~v~ 107 (246)
++|.+. ++.+++++ +|+|++|+++||| +.+++.+++|| ++++.|+|+||||||| |+|+
T Consensus 3 ~~~~~~e~~~~~~~~--~di~s~llk~riI~l~g~I~~~~a~~i~aqll~Lea~~~~k~I~lyINSpG--------G~V~ 72 (200)
T COG0740 3 LVPMVIEQTSRGERS--YDIYSRLLKERIIFLGGEIEDHMANLIVAQLLFLEAEDPDKDIYLYINSPG--------GSVT 72 (200)
T ss_pred CCccccCcccCCCCh--hhHHHHhhhccEEEEeeeechHHHHHHHHHHHHHHhcCCCCCeEEEEeCCC--------cccc
Confidence 678888 66788877 9999999999999 66899999999 7789999999999999 9999
Q ss_pred HHHHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHH
Q 025916 108 EAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVK 187 (246)
Q Consensus 108 ~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~ 187 (246)
+|++|||+|+++++||+|+|+|+|||||++|++||+||||+++|||++|||||+++++|+++|++++|+|+.++++.+.+
T Consensus 73 aG~AIydtm~~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~gg~~G~a~Di~i~A~ei~~~~~~l~~ 152 (200)
T COG0740 73 AGLAIYDTMQFIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNARIMIHQPSGGAQGQASDIEIHAREILKIKERLNR 152 (200)
T ss_pred hhHHHHHHHHhcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCCceEEEecCCccCccCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCCCCC
Q 025916 188 LYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKSP 231 (246)
Q Consensus 188 iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~~~~ 231 (246)
+|+++||++.|+|+++++||+||||+||++|||||+|++..+..
T Consensus 153 i~a~~TGq~~e~i~~d~drd~~msa~eA~~yGLiD~V~~~~~~~ 196 (200)
T COG0740 153 IYAEHTGQTLEKIEKDTDRDTWMSAEEAKEYGLIDKVIESREAA 196 (200)
T ss_pred HHHHHcCCCHHHHHHhhcccccCCHHHHHHcCCcceeccccccc
Confidence 99999999999999999999999999999999999999887543
No 3
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=100.00 E-value=1.4e-57 Score=401.07 Aligned_cols=176 Identities=43% Similarity=0.746 Sum_probs=168.8
Q ss_pred CCCCccccccCCCCC-------CC----------chhHHHHHH----hhCCCCCEEEEEcCCCCC-CCCCCCchHHHHHH
Q 025916 54 GLRLRPDCLNPDSFC-------KS----------KPRSPVITM----YEDVEKPIYLYINSTGTT-KGGEKLGYETEAFA 111 (246)
Q Consensus 54 ~~~di~s~Ll~~RIi-------~~----------~a~~iiaqL----~ed~~k~I~LyINSpG~~-~~~~~~G~v~~g~a 111 (246)
+|+|+|++||++||| ++ +++++++|| ++|+.++|+|||||||++ ++|+++|++++|++
T Consensus 19 ~~~d~~~~Ll~~Rii~l~~~i~~~~~~~~~~~~~~a~~iiaqLl~L~~~~~~k~I~lyINSpGGsv~~G~~iG~v~~gla 98 (222)
T PRK12552 19 PPPDLPSLLLKERIVYLGLPLFSDDDAKRQVGMDVTELIIAQLLYLEFDDPEKPIYFYINSTGTSWYTGDAIGFETEAFA 98 (222)
T ss_pred CCcCHHHHHhhCCEEEECCeeccccccccchhHhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCCccccccccccccHHH
Confidence 348999999999999 77 999999999 577889999999999977 68898999999999
Q ss_pred HHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHH
Q 025916 112 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAK 191 (246)
Q Consensus 112 Iyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~ 191 (246)
|||+|++++++|+|+|+|+|||||++||++|+||+|+++|||++|||||+++..|+++|++++++|++++++.+.++|++
T Consensus 99 IyD~m~~ik~~V~Tv~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~~G~A~di~~~a~el~~~r~~l~~iya~ 178 (222)
T PRK12552 99 ICDTMRYIKPPVHTICIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGARGQATDIQIRAKEVLHNKRTMLEILSR 178 (222)
T ss_pred HHHHHHhcCCCeEEEEEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCCC
Q 025916 192 HFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEK 229 (246)
Q Consensus 192 ~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~~ 229 (246)
+||++.|+|.++++||+||||+||+||||||+|+++..
T Consensus 179 ~TG~~~e~I~~d~~rd~wmsA~EA~eyGliD~Ii~~~~ 216 (222)
T PRK12552 179 NTGQTVEKLSKDTDRMFYLTPQEAKEYGLIDRVLESRK 216 (222)
T ss_pred HHCCCHHHHHHHhcCCCcCCHHHHHHcCCCcEEeccCC
Confidence 99999999999999999999999999999999998753
No 4
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=100.00 E-value=2.8e-56 Score=392.96 Aligned_cols=181 Identities=35% Similarity=0.530 Sum_probs=171.7
Q ss_pred cccccccc-cCCCCCCCCCCCccccccCCCCC-------CCchhHHHHHH----hhCCCCCEEEEEcCCCCCCCCCCCch
Q 025916 38 SFISPFAN-GSVSSDFSGLRLRPDCLNPDSFC-------KSKPRSPVITM----YEDVEKPIYLYINSTGTTKGGEKLGY 105 (246)
Q Consensus 38 ~~~~p~~~-~~~~~~~~~~~di~s~Ll~~RIi-------~~~a~~iiaqL----~ed~~k~I~LyINSpG~~~~~~~~G~ 105 (246)
.+++|.++ .+..|+++ +|+|++||++||| +++++.+++|| .++++++|+||||||| |+
T Consensus 28 ~~~~p~~~~~~~~~~~~--~d~~~~ll~~Riifl~~~Idd~~a~~i~aqLl~L~~~~~~~~I~lyINSpG--------Gs 97 (221)
T PRK14514 28 SYLNPYILEERQLNVTQ--MDVFSRLMMDRIIFLGTQIDDYTANTIQAQLLYLDSVDPGKDISIYINSPG--------GS 97 (221)
T ss_pred CcccceeeeeCCCCCcc--cCHHHHHhhCcEEEECCEEcHHHHHHHHHHHHHHhccCCCCCEEEEEECCC--------cc
Confidence 35889887 66667755 9999999999999 78999999998 4567899999999999 99
Q ss_pred HHHHHHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHH
Q 025916 106 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAEL 185 (246)
Q Consensus 106 v~~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i 185 (246)
|++|++|||+|+++++||+|+|+|+|||||++|+++|++|+|+++|||++|||||+++..|+++|+++++++++++++.+
T Consensus 98 v~aGlaIyd~m~~~~~~V~tv~~G~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~i 177 (221)
T PRK14514 98 VYAGLGIYDTMQFISSDVATICTGMAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQGQASDIEITAREIQKLKKEL 177 (221)
T ss_pred hhhHHHHHHHHHhcCCCEEEEEEEEehhHHHHHHhcCCCCceeeCCCCEEEeccCCcccCCCcchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 186 VKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 186 ~~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
.++|+++||++.++|+++++||+||||+||++|||||+|++.+
T Consensus 178 ~~iya~~TG~~~e~I~~~~~rd~wmtA~EA~eyGliD~Vi~~~ 220 (221)
T PRK14514 178 YTIIADHSGTPFDKVWADSDRDYWMTAQEAKEYGMIDEVLIKK 220 (221)
T ss_pred HHHHHHHHCcCHHHHHHHhhcCccCCHHHHHHcCCccEEeecC
Confidence 9999999999999999999999999999999999999999864
No 5
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=100.00 E-value=4e-56 Score=387.20 Aligned_cols=182 Identities=33% Similarity=0.516 Sum_probs=170.5
Q ss_pred cccccc-cCCCCCCCCCCCccccccCCCCC-------CCchhHHHHHH----hhCCCCCEEEEEcCCCCCCCCCCCchHH
Q 025916 40 ISPFAN-GSVSSDFSGLRLRPDCLNPDSFC-------KSKPRSPVITM----YEDVEKPIYLYINSTGTTKGGEKLGYET 107 (246)
Q Consensus 40 ~~p~~~-~~~~~~~~~~~di~s~Ll~~RIi-------~~~a~~iiaqL----~ed~~k~I~LyINSpG~~~~~~~~G~v~ 107 (246)
++|.+. ++..+++. .|+|++||++||+ +++|++|++|| ++++.++|+||||||| |+|+
T Consensus 3 ~~p~~~~~~~~~~~~--~d~~~~l~~~Riifl~~~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~INSpG--------G~v~ 72 (201)
T PRK14513 3 VIPYVIEQTGRGERM--YDIYSRLLKDRIIFVGTPIESQMANTIVAQLLLLDSQNPEQEIQMYINCPG--------GEVY 72 (201)
T ss_pred CCCcccccCCCCccc--cCHHHHHhhCCEEEECCEEcHHHHHHHHHHHHHhhccCCCCCEEEEEECCC--------Cchh
Confidence 356666 55566644 8999999999999 78999999999 5677899999999999 9999
Q ss_pred HHHHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHH
Q 025916 108 EAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVK 187 (246)
Q Consensus 108 ~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~ 187 (246)
+|++|||+|++++++|+|+|+|+|||||++|++||++|+|+++|||++|||||+++..|+++|++++++++++.++.+.+
T Consensus 73 ~GlaIyd~m~~~~~~V~Ti~~G~AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~~G~a~di~~~a~el~~~~~~l~~ 152 (201)
T PRK14513 73 AGLAIYDTMRYIKAPVSTICVGIAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFRGNTPDLEVQAKEVLFLRDTLVD 152 (201)
T ss_pred hHHHHHHHHHhcCCCEEEEEEeeehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCCCCC
Q 025916 188 LYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKSP 231 (246)
Q Consensus 188 iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~~~~ 231 (246)
+|+++||++.++|.++|+||+||||+||++|||||+|+++.+.+
T Consensus 153 iya~~Tg~~~~~I~~~~~rd~~msa~EA~eyGliD~I~~~~~~~ 196 (201)
T PRK14513 153 IYHRHTDLPHEKLLRDMERDYFMSPEEAKAYGLIDSVIEPTRVK 196 (201)
T ss_pred HHHHHHCcCHHHHHHHhccCcccCHHHHHHcCCCcEEeccCCCC
Confidence 99999999999999999999999999999999999999876544
No 6
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=100.00 E-value=3.5e-54 Score=373.76 Aligned_cols=178 Identities=39% Similarity=0.548 Sum_probs=166.4
Q ss_pred ccccc-cCCCCCCCCCCCccccccCCCCC-------CCchhHHHHHH----hhCCCCCEEEEEcCCCCCCCCCCCchHHH
Q 025916 41 SPFAN-GSVSSDFSGLRLRPDCLNPDSFC-------KSKPRSPVITM----YEDVEKPIYLYINSTGTTKGGEKLGYETE 108 (246)
Q Consensus 41 ~p~~~-~~~~~~~~~~~di~s~Ll~~RIi-------~~~a~~iiaqL----~ed~~k~I~LyINSpG~~~~~~~~G~v~~ 108 (246)
+|.+. .+..++.. .|+|++||++||+ +++++++++|| ++++.++|+||||||| |+|++
T Consensus 2 ~p~~~~~~~~~~~~--~d~~~~l~~~Riifl~~~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INSpG--------G~v~~ 71 (196)
T PRK12551 2 IPIVIEESGRGERA--FDIYSRLLRERIIFLGEPVTSDSANRIVAQLLFLEAEDPEKDIYLYINSPG--------GSVYD 71 (196)
T ss_pred CCcccccCCCCccc--cCHHHHHhcCcEEEECCeecHHHHHHHHHHHHHhhccCCCCCEEEEEeCCC--------cchhh
Confidence 45444 34444444 8999999999998 77899999999 5677899999999999 99999
Q ss_pred HHHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHH
Q 025916 109 AFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKL 188 (246)
Q Consensus 109 g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~i 188 (246)
|++|||+|+++++||+|+|+|+|||||++|+++|++|+|+++|||++|||||+++..|+++|++++++++++.++.+.++
T Consensus 72 g~aIyd~m~~~~~~V~t~~~G~AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~ 151 (196)
T PRK12551 72 GLGIFDTMQHVKPDVHTVCVGLAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILFLKERLNTE 151 (196)
T ss_pred HHHHHHHHHhcCCCEEEEEEEEehhHHHHHHhCCCCCceecCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 189 YAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 189 ya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
|+++||++.++|.++++||+||||+||++|||||+|+++.
T Consensus 152 ya~~tG~~~~~i~~~~~rd~~msa~EA~eyGliD~I~~~~ 191 (196)
T PRK12551 152 LSERTGQPLERIQEDTDRDFFMSPSEAVEYGLIDLVIDKR 191 (196)
T ss_pred HHHHHCcCHHHHHHHhhcCcCCCHHHHHHcCCCcEEeccC
Confidence 9999999999999999999999999999999999999875
No 7
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=100.00 E-value=2e-53 Score=370.01 Aligned_cols=167 Identities=32% Similarity=0.524 Sum_probs=161.6
Q ss_pred CCCCccccccCCCCC-------CCchhHHHHHH----hhCCCCCEEEEEcCCCCCCCCCCCchHHHHHHHHHHhcccCCC
Q 025916 54 GLRLRPDCLNPDSFC-------KSKPRSPVITM----YEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPP 122 (246)
Q Consensus 54 ~~~di~s~Ll~~RIi-------~~~a~~iiaqL----~ed~~k~I~LyINSpG~~~~~~~~G~v~~g~aIyd~m~~i~~~ 122 (246)
.|.|+|++||++||| +++++++++|| ++|+.++|+||||||| |+|++|++|||+|+++++|
T Consensus 19 ~~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~ll~L~~~~~~~~I~l~INSpG--------G~v~~g~aIyd~m~~~~~~ 90 (200)
T CHL00028 19 TWVDLYNRLYRERLLFLGQEVDDEIANQLIGLMVYLSIEDDTKDLYLFINSPG--------GSVISGLAIYDTMQFVKPD 90 (200)
T ss_pred ccccHHHHHhcCCEEEECCeecHHHHHHHHHHHHHHhccCCCCCEEEEEeCCC--------cchhhHHHHHHHHHhcCCC
Confidence 457999999999999 78999999999 5678899999999999 9999999999999999999
Q ss_pred EEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcC-cccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Q 025916 123 IFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR-IEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIE 201 (246)
Q Consensus 123 V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~-~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~ 201 (246)
|+|+|+|+|||||++||++|+||+|+++|||++|||||+++ ..|+++|+++++++++++++.+.++|+++||++.++|+
T Consensus 91 V~Tv~~G~AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~Tg~~~e~i~ 170 (200)
T CHL00028 91 VHTICLGLAASMASFILAGGEITKRLAFPHARVMIHQPASSFYEGQASEFVLEAEELLKLRETITRVYAQRTGKPLWVIS 170 (200)
T ss_pred EEEEEEEehHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHH
Confidence 99999999999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred HHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 202 ADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 202 ~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
++++||+||||+||++|||||+|+++.
T Consensus 171 ~~~~r~~~lta~EA~eyGliD~I~~~~ 197 (200)
T CHL00028 171 EDMERDVFMSATEAKAYGIVDLVAVNN 197 (200)
T ss_pred HHhhcCccCCHHHHHHcCCCcEEeecC
Confidence 999999999999999999999999765
No 8
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=100.00 E-value=4.7e-49 Score=340.04 Aligned_cols=177 Identities=43% Similarity=0.613 Sum_probs=164.8
Q ss_pred ccccc-cCCCCCCCCCCCccccccCCCCC-------CCchhHHHHHH----hhCCCCCEEEEEcCCCCCCCCCCCchHHH
Q 025916 41 SPFAN-GSVSSDFSGLRLRPDCLNPDSFC-------KSKPRSPVITM----YEDVEKPIYLYINSTGTTKGGEKLGYETE 108 (246)
Q Consensus 41 ~p~~~-~~~~~~~~~~~di~s~Ll~~RIi-------~~~a~~iiaqL----~ed~~k~I~LyINSpG~~~~~~~~G~v~~ 108 (246)
+|.+. .+..+++. .|+|++|+++|+| +++++.+++|| .+++.++|+||||||| |++++
T Consensus 3 ~p~~~~~~~~~~~~--~d~~~~l~~~riI~l~g~I~~~~~~~ii~~L~~l~~~~~~~~i~l~InSpG--------G~v~~ 72 (191)
T TIGR00493 3 IPMVIEQTGRGERS--FDIYSRLLKERIIFLSGEVNDSVANLIVAQLLFLEAEDPEKDIYLYINSPG--------GSITA 72 (191)
T ss_pred CCcccccCCCCccc--ccHHHHHhcCeEEEEccEEChHHHHHHHHHHHHhhccCCCCCEEEEEECCC--------CCHHH
Confidence 45443 45556644 9999999999999 67889999998 4567899999999999 99999
Q ss_pred HHHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHH
Q 025916 109 AFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKL 188 (246)
Q Consensus 109 g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~i 188 (246)
|++|||+|++++++|+|+|+|+|+|||++|+++|++++|+++|||++|||||+++..|++.|+++++++++++++.+.++
T Consensus 73 g~~I~d~l~~~~~~v~t~~~G~AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ 152 (191)
T TIGR00493 73 GLAIYDTMQFIKPDVSTICIGQAASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDI 152 (191)
T ss_pred HHHHHHHHHhcCCCEEEEEEEeeccHHHHHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999989999999999999999999999999
Q ss_pred HHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccC
Q 025916 189 YAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYT 227 (246)
Q Consensus 189 ya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~ 227 (246)
|+++||++.++|++++++|+||||+||++|||||+|++.
T Consensus 153 ya~~tg~~~~~i~~~~~~~~~lta~EA~~~GliD~ii~~ 191 (191)
T TIGR00493 153 LANHTGQSLEQIEKDTERDFFMSAEEAKEYGLIDSVLTR 191 (191)
T ss_pred HHHHHCcCHHHHHHHhhCCccCcHHHHHHcCCccEEecC
Confidence 999999999999999999999999999999999999863
No 9
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=100.00 E-value=1.3e-47 Score=332.79 Aligned_cols=167 Identities=33% Similarity=0.524 Sum_probs=159.6
Q ss_pred CCCCccccccCCCCC-------CCchhHHHHHH----hhCCCCCEEEEEcCCCCCCCCCCCchHHHHHHHHHHhcccCCC
Q 025916 54 GLRLRPDCLNPDSFC-------KSKPRSPVITM----YEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPP 122 (246)
Q Consensus 54 ~~~di~s~Ll~~RIi-------~~~a~~iiaqL----~ed~~k~I~LyINSpG~~~~~~~~G~v~~g~aIyd~m~~i~~~ 122 (246)
++.+++++||++|+| +++++.|+++| .+++.++|+||||||| |+|++|++|||+|++++.|
T Consensus 12 ~~~~~~~~l~~~r~I~i~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpG--------G~v~ag~aI~d~i~~~~~~ 83 (197)
T PRK14512 12 GIDKSLEKFLKSRSIVIAGEINKDLSELFQEKILLLEALDSKKPIFVYIDSEG--------GDIDAGFAIFNMIRFVKPK 83 (197)
T ss_pred CcchHHHHHhcCcEEEECCEEcHHHHHHHHHHHHHHHhcCCCCCEEEEEECCC--------CCHHHHHHHHHHHHhCCCC
Confidence 447899999999998 67889999998 3366899999999999 9999999999999999999
Q ss_pred EEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Q 025916 123 IFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEA 202 (246)
Q Consensus 123 V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~~ 202 (246)
|+|+|.|.|+|||++|+++|++|+|+++|||++|||||+++..|+++|+++++++++++++.+.++|+++||++.++|++
T Consensus 84 V~t~v~G~AaSaaslIl~ag~~~~R~~~p~s~imiHqP~~~~~G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~~~~i~~ 163 (197)
T PRK14512 84 VFTIGVGLVASAAALIFLAAKKESRFSLPNARYLLHQPLSGFKGVATDIEIYANELNKVKSELNDIIAKETGQELDKVEK 163 (197)
T ss_pred EEEEEEeeeHhHHHHHHhcCCcCceeECCCCcEEEEcCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCccCHHHHHHcCCceEEccCC
Q 025916 203 DIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 203 ~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
++++|+||||+||++|||||+|+++.
T Consensus 164 ~~~~d~~lta~EA~~yGliD~I~~~~ 189 (197)
T PRK14512 164 DTDRDFWLDSSSAVKYGLVFEVVETR 189 (197)
T ss_pred hhhcCcccCHHHHHHcCCccEeecCc
Confidence 99999999999999999999999764
No 10
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=100.00 E-value=5.1e-47 Score=329.36 Aligned_cols=180 Identities=42% Similarity=0.633 Sum_probs=167.0
Q ss_pred cccccc-cCCCCCCCCCCCccccccCCCCC-------CCchhHHHHHH----hhCCCCCEEEEEcCCCCCCCCCCCchHH
Q 025916 40 ISPFAN-GSVSSDFSGLRLRPDCLNPDSFC-------KSKPRSPVITM----YEDVEKPIYLYINSTGTTKGGEKLGYET 107 (246)
Q Consensus 40 ~~p~~~-~~~~~~~~~~~di~s~Ll~~RIi-------~~~a~~iiaqL----~ed~~k~I~LyINSpG~~~~~~~~G~v~ 107 (246)
++|+.. .+..++. ++|+++.||++||| +++++.++++| .+++.++|+||||||| |+++
T Consensus 7 ~~p~~~~~~~~~~~--~~~~~~~l~~~rii~i~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~InSpG--------G~v~ 76 (200)
T PRK00277 7 LVPMVIEQTSRGER--SYDIYSRLLKERIIFLGGEVEDHMANLIVAQLLFLEAEDPDKDIYLYINSPG--------GSVT 76 (200)
T ss_pred CCceeeccCCCCcc--cccHHHHhhcCcEEEECCEECHHHHHHHHHHHHHhhccCCCCCEEEEEECCC--------CcHH
Confidence 466655 4444443 48999999999999 67899999998 4567889999999999 9999
Q ss_pred HHHHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHH
Q 025916 108 EAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVK 187 (246)
Q Consensus 108 ~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~ 187 (246)
+|++|||+|+++++||+|+|.|.|+|+|++|+++|++++|+++|||++|||||+++..|++.|+++++++++++++.+.+
T Consensus 77 ~g~~I~d~i~~~~~~v~t~~~G~aaS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~~G~a~di~~~a~~l~~~~~~~~~ 156 (200)
T PRK00277 77 AGLAIYDTMQFIKPDVSTICIGQAASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGFQGQATDIEIHAREILKLKKRLNE 156 (200)
T ss_pred HHHHHHHHHHhcCCCEEEEEEeEeccHHHHHHhcCCCCCEEEcCCceEEeccCcccccCChhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCCC
Q 025916 188 LYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEK 229 (246)
Q Consensus 188 iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~~ 229 (246)
+|+++||++.++|++++++|+||||+||++|||||+|++..+
T Consensus 157 ~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~Ii~~~~ 198 (200)
T PRK00277 157 ILAEHTGQPLEKIEKDTDRDNFMSAEEAKEYGLIDEVLTKRK 198 (200)
T ss_pred HHHHHHCcCHHHHHHHhhCCccccHHHHHHcCCccEEeecCC
Confidence 999999999999999999999999999999999999998754
No 11
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=100.00 E-value=1.6e-45 Score=321.56 Aligned_cols=180 Identities=32% Similarity=0.539 Sum_probs=165.1
Q ss_pred ccccc-cCCCCCCCCCCCccccccCCCCC-------CCchhHHHHHH----hhCCCCCEEEEEcCCCCCCCCCCCchHHH
Q 025916 41 SPFAN-GSVSSDFSGLRLRPDCLNPDSFC-------KSKPRSPVITM----YEDVEKPIYLYINSTGTTKGGEKLGYETE 108 (246)
Q Consensus 41 ~p~~~-~~~~~~~~~~~di~s~Ll~~RIi-------~~~a~~iiaqL----~ed~~k~I~LyINSpG~~~~~~~~G~v~~ 108 (246)
+|.+. ....+... .|++++||++|+| +++++.++++| .+++.++|+||||||| |++++
T Consensus 12 ~p~~~~~~~~~~~~--~~~~~~l~~~r~I~l~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpG--------G~v~~ 81 (207)
T PRK12553 12 LPSFIERTSYGVKE--SDPYNKLFEERIIFLGGQVDDASANDVMAQLLVLESIDPDRDITLYINSPG--------GSVTA 81 (207)
T ss_pred CCcccccCCCCCcc--ccHHHHHhcCeEEEEcceECHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCC--------CcHHH
Confidence 66554 34444433 7999999999999 67889999998 3455899999999999 99999
Q ss_pred HHHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCC--cCcccChHHHHHHHHHHHHHHHHHH
Q 025916 109 AFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI--GRIEGQATDVEIARKEMKNVKAELV 186 (246)
Q Consensus 109 g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~--~~~~G~a~di~i~a~el~~~~~~i~ 186 (246)
|++|||+|++++.||+|+|.|.|+|+|++|+++|++|+|++.|||++|+|||+ ++..|++.|+++++++++++++.+.
T Consensus 82 g~~I~d~i~~~~~~v~t~~~G~aaSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~~~G~a~d~~~~~~~l~~~~~~~~ 161 (207)
T PRK12553 82 GDAIYDTIQFIRPDVQTVCTGQAASAGAVLLAAGTPGKRFALPNARILIHQPSLGGGIRGQASDLEIQAREILRMRERLE 161 (207)
T ss_pred HHHHHHHHHhcCCCcEEEEEeehhhHHHHHHHcCCcCcEEECCCchhhhcCccccCCCccCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998 5689999999999999999999999
Q ss_pred HHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCCCC
Q 025916 187 KLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKS 230 (246)
Q Consensus 187 ~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~~~ 230 (246)
++|+++||++.++|++++++++||||+||++|||||+|++..++
T Consensus 162 ~~ya~~tg~~~e~i~~~~~~~~~lta~EA~e~GliD~I~~~~~d 205 (207)
T PRK12553 162 RILAEHTGQSVEKIRKDTDRDKWLTAEEAKDYGLVDQIITSYRD 205 (207)
T ss_pred HHHHHHhCCCHHHHHHHHhcCccccHHHHHHcCCccEEcCchhh
Confidence 99999999999999999999999999999999999999987643
No 12
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=100.00 E-value=2.5e-45 Score=311.76 Aligned_cols=167 Identities=33% Similarity=0.505 Sum_probs=155.8
Q ss_pred CCCCccccccCCCCC-------CCchhHHHHHH----hhCCCCCEEEEEcCCCCCCCCCCCchHHHHHHHHHHhcccCCC
Q 025916 54 GLRLRPDCLNPDSFC-------KSKPRSPVITM----YEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPP 122 (246)
Q Consensus 54 ~~~di~s~Ll~~RIi-------~~~a~~iiaqL----~ed~~k~I~LyINSpG~~~~~~~~G~v~~g~aIyd~m~~i~~~ 122 (246)
.|+|+|++|+++|+| +++++.++++| .+++.++|+|+||||| |++++|++|||+|+.++.|
T Consensus 5 ~~~~i~~~l~~~r~i~l~g~I~~~~~~~~~~~L~~l~~~~~~~~i~i~INSpG--------G~v~~g~~i~~~i~~~~~~ 76 (182)
T PF00574_consen 5 EWYDIYSRLLNERIIFLNGPIDEESANRLISQLLYLENEDKNKPINIYINSPG--------GDVDAGLAIYDAIRSSKAP 76 (182)
T ss_dssp EEEEHHHHHHTTTEEEEESSBSHHHHHHHHHHHHHHHHHTSSSEEEEEEEECE--------BCHHHHHHHHHHHHHSSSE
T ss_pred EEEeHHHHHhCCeEEEECCccCHHHHHHHHHHHHHHhccCCCceEEEEEcCCC--------CccHHHHHHHHHHHhcCCC
Confidence 358999999999999 66889999997 4678899999999999 9999999999999999999
Q ss_pred EEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Q 025916 123 IFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEA 202 (246)
Q Consensus 123 V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~~ 202 (246)
|+|+|.|.|+|+|++|+++|++++|++.|||+||+|+|+.+..|++.+++++++++++.++.+.++|+++||+++++|++
T Consensus 77 v~t~~~G~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~ 156 (182)
T PF00574_consen 77 VTTVVLGLAASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGGNASELREQAKELEKLNERIANIYAERTGLSKEEIEE 156 (182)
T ss_dssp EEEEEEEEEETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHH
T ss_pred eEEEEeCccccceehhhhcCCcCceeeeecCEEEeecceeecccccchhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCccCHHHHHHcCCceEEccCC
Q 025916 203 DIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 203 ~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
++++|+||+|+||++|||||+|++++
T Consensus 157 ~~~~~~~l~a~EA~~~GiiD~I~~~~ 182 (182)
T PF00574_consen 157 LMDRDTWLSAEEALEYGIIDEIIESR 182 (182)
T ss_dssp HCSSTEEEEHHHHHHHTSSSEEESS-
T ss_pred HHhCCccccHHHHHHcCCCCEeccCC
Confidence 99999999999999999999999763
No 13
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=100.00 E-value=1.1e-43 Score=300.82 Aligned_cols=160 Identities=47% Similarity=0.725 Sum_probs=153.2
Q ss_pred CccccccCCCCC-------CCchhHHHHHH----hhCCCCCEEEEEcCCCCCCCCCCCchHHHHHHHHHHhcccCCCEEE
Q 025916 57 LRPDCLNPDSFC-------KSKPRSPVITM----YEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFT 125 (246)
Q Consensus 57 di~s~Ll~~RIi-------~~~a~~iiaqL----~ed~~k~I~LyINSpG~~~~~~~~G~v~~g~aIyd~m~~i~~~V~T 125 (246)
|++++|+++|++ ++++++++++| .+++.++|+||||||| |++++|++|||.|++++.+|+|
T Consensus 1 ~~~~~l~~~r~i~i~g~I~~~~~~~i~~~l~~~~~~~~~~~i~l~inSpG--------G~v~~~~~i~~~l~~~~~~v~t 72 (171)
T cd07017 1 DIYSRLLKERIIFLGGPIDDEVANLIIAQLLYLESEDPKKPIYLYINSPG--------GSVTAGLAIYDTMQYIKPPVST 72 (171)
T ss_pred ChhHhhhcCcEEEEcCEEcHHHHHHHHHHHHHHHccCCCCceEEEEECCC--------CCHHHHHHHHHHHHhcCCCEEE
Confidence 789999999998 56788899998 3445699999999999 9999999999999999999999
Q ss_pred EEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhc
Q 025916 126 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIR 205 (246)
Q Consensus 126 i~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~~~~~ 205 (246)
+|.|+|+|+|++|+++|++|+|++.|||++|+|+|+++..|++.|+..++++++++++.+.++|+++||++.++|.++|+
T Consensus 73 ~~~g~aaS~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~ 152 (171)
T cd07017 73 ICLGLAASMGALLLAAGTKGKRYALPNSRIMIHQPLGGAGGQASDIEIQAKEILRLRRRLNEILAKHTGQPLEKIEKDTD 152 (171)
T ss_pred EEEeEehhHHHHHHHcCCCCCEEEccchHHHHcCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCHHHHHHcCCceEE
Q 025916 206 RPKYFSPSEAVEYGIIDKV 224 (246)
Q Consensus 206 rd~~~sa~EAleyGLID~I 224 (246)
+++||||+||++|||||+|
T Consensus 153 ~~~~lta~EA~e~GiiD~V 171 (171)
T cd07017 153 RDRYMSAEEAKEYGLIDKI 171 (171)
T ss_pred CCccccHHHHHHcCCCccC
Confidence 9999999999999999986
No 14
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=100.00 E-value=1.7e-42 Score=291.71 Aligned_cols=150 Identities=37% Similarity=0.563 Sum_probs=143.8
Q ss_pred CCCCchhHHHHHH----hhCCCCCEEEEEcCCCCCCCCCCCchHHHHHHHHHHhcccCCCEEEEEecccchHHHHHHhcc
Q 025916 67 FCKSKPRSPVITM----YEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAG 142 (246)
Q Consensus 67 Ii~~~a~~iiaqL----~ed~~k~I~LyINSpG~~~~~~~~G~v~~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG 142 (246)
|-+.+++.++++| .+++.++|.||||||| |+++++++|||+|++++.||+|+|.|+|+|+|++|+++|
T Consensus 9 I~~~~~~~~~~~L~~l~~~~~~~~i~l~InSpG--------G~v~~~~~i~~~i~~~~~~v~~~~~g~aaS~~~~i~~a~ 80 (162)
T cd07013 9 VEDISANQFAAQLLFLGAVNPEKDIYLYINSPG--------GDVFAGMAIYDTIKFIKADVVTIIDGLAASMGSVIAMAG 80 (162)
T ss_pred ECcHHHHHHHHHHHHHhcCCCCCCEEEEEECCC--------CcHHHHHHHHHHHHhcCCCceEEEEeehhhHHHHHHHcC
Confidence 3377899999999 3456799999999999 999999999999999999999999999999999999999
Q ss_pred cCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCce
Q 025916 143 AKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIID 222 (246)
Q Consensus 143 ~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID 222 (246)
++|+|+++||+++|||||+++..|++.|++++++++++.++.+.++|+++||++.++|++++++++||||+||++|||||
T Consensus 81 ~~g~r~~~p~a~~~ih~~~~~~~g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~~sa~eA~~~GliD 160 (162)
T cd07013 81 AKGKRFILPNAMMMIHQPWGGTLGDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHADLERDTWLSAREAVEYGFAD 160 (162)
T ss_pred CCCcEEEecCEEEEEccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHcCCccccHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EE
Q 025916 223 KV 224 (246)
Q Consensus 223 ~I 224 (246)
+|
T Consensus 161 ~i 162 (162)
T cd07013 161 TI 162 (162)
T ss_pred cC
Confidence 86
No 15
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=99.97 E-value=4.8e-31 Score=219.86 Aligned_cols=145 Identities=24% Similarity=0.335 Sum_probs=137.3
Q ss_pred CchhHHHHHHhh-CCCCCEEEEEcCCCCCCCCCCCchHHHHHHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEE
Q 025916 70 SKPRSPVITMYE-DVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRA 148 (246)
Q Consensus 70 ~~a~~iiaqL~e-d~~k~I~LyINSpG~~~~~~~~G~v~~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~ 148 (246)
..++.+.++|.. ...++|.||||||| |++.++++|++.|+.++.||+|++.|.|+|+|++|+++|+ +|+
T Consensus 15 ~~~~~~~~~l~~~~~~~~i~l~inspG--------G~~~~~~~i~~~i~~~~~pvi~~v~g~a~s~g~~ia~a~d--~~~ 84 (160)
T cd07016 15 VTAKEFKDALDALGDDSDITVRINSPG--------GDVFAGLAIYNALKRHKGKVTVKIDGLAASAASVIAMAGD--EVE 84 (160)
T ss_pred cCHHHHHHHHHhccCCCCEEEEEECCC--------CCHHHHHHHHHHHHhcCCCEEEEEcchHHhHHHHHHhcCC--eEE
Confidence 578899999933 22399999999999 9999999999999999999999999999999999999996 799
Q ss_pred eccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEE
Q 025916 149 ALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKV 224 (246)
Q Consensus 149 a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~I 224 (246)
+.|+++||+|+|.++..|+..+++...+++++.++.+.+.|++++|++.+++++++.+++||+++||+++||||+|
T Consensus 85 ~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~l~a~eA~~~GliD~v 160 (160)
T cd07016 85 MPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAETWLTAQEAVELGFADEI 160 (160)
T ss_pred ECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCeECcHHHHHHcCCCCcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999986
No 16
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=99.96 E-value=2.1e-29 Score=214.82 Aligned_cols=142 Identities=20% Similarity=0.207 Sum_probs=127.0
Q ss_pred chhHHHHHH---hhCCCCCEEEEEcCCCCCCCCCCCchHHHHHHHHHHhcccCCCEEEEEe---cccchHHHHHHhcccC
Q 025916 71 KPRSPVITM---YEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCV---GNAWGEAALLLGAGAK 144 (246)
Q Consensus 71 ~a~~iiaqL---~ed~~k~I~LyINSpG~~~~~~~~G~v~~g~aIyd~m~~i~~~V~Ti~~---G~AaS~aa~IlaaG~k 144 (246)
.+..+...| .+++.++|.|+||||| |.++++++|||+|++.+.||.|+|. |+|+|+|++|+++|+
T Consensus 14 ~~~~l~~~l~~A~~~~~~~i~l~inSPG--------G~v~~~~~I~~~i~~~~~pvv~~v~p~g~~AaSag~~I~~a~~- 84 (172)
T cd07015 14 TYDQFDRYITIAEQDNAEAIIIELDTPG--------GRADAAGNIVQRIQQSKIPVIIYVYPPGASAASAGTYIALGSH- 84 (172)
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEEECCC--------CCHHHHHHHHHHHHhcCcCEEEEEecCCCeehhHHHHHHHhcC-
Confidence 344444445 3466799999999999 9999999999999999999999999 999999999999996
Q ss_pred CcEEeccCceeeeecCCcCcccC-----hHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcC
Q 025916 145 GNRAALPSSTIMIKQPIGRIEGQ-----ATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYG 219 (246)
Q Consensus 145 gkR~a~Pns~iMiHqp~~~~~G~-----a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyG 219 (246)
+|++.|+++++.|+|..+ .|+ +.|.++.+.++.+++. ++++||++.+.+++++++++|||++||++||
T Consensus 85 -~i~m~p~s~iG~~~pi~~-~g~~~~~~~~~~ki~~~~~~~~r~-----~A~~~Gr~~~~a~~~v~~~~~lta~EA~~~G 157 (172)
T cd07015 85 -LIAMAPGTSIGACRPILG-YSQNGSIIEAPPKITNYFIAYIKS-----LAQESGRNATIAEEFITKDLSLTPEEALKYG 157 (172)
T ss_pred -ceEECCCCEEEEcccccc-CCCCCccccchHHHHHHHHHHHHH-----HHHHHCcCHHHHHHHHHhhcCcCHHHHHHcC
Confidence 599999999999999865 366 6788888888888887 9999999999999999999999999999999
Q ss_pred CceEEccCC
Q 025916 220 IIDKVLYTE 228 (246)
Q Consensus 220 LID~Ii~~~ 228 (246)
+||.|..+.
T Consensus 158 ~iD~ia~~~ 166 (172)
T cd07015 158 VIEVVARDI 166 (172)
T ss_pred CceeeeCCH
Confidence 999999875
No 17
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=99.95 E-value=8.6e-27 Score=193.52 Aligned_cols=148 Identities=23% Similarity=0.360 Sum_probs=134.6
Q ss_pred CCCCchhHHHHHH---hh-CCCCCEEEEEcCCCCCCCCCCCchHHHHHHHHHHhcccCCCEEEEEecccchHHHHHHhcc
Q 025916 67 FCKSKPRSPVITM---YE-DVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAG 142 (246)
Q Consensus 67 Ii~~~a~~iiaqL---~e-d~~k~I~LyINSpG~~~~~~~~G~v~~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG 142 (246)
|.+...+.+++.| .+ ++.+.|.|++|||| |++.++.+|++.|+..+.||.+++.|.|+|+|++|+++|
T Consensus 8 I~~~~~~~l~~~l~~a~~d~~~~~ivl~~~s~G--------g~~~~~~~i~~~l~~~~kpvva~~~g~~~s~g~~la~~~ 79 (161)
T cd00394 8 IEDVSADQLAAQIRFAEADNSVKAIVLEVNTPG--------GRVDAGMNIVDALQASRKPVIAYVGGQAASAGYYIATAA 79 (161)
T ss_pred EccchHHHHHHHHHHHHhCCCCceEEEEEECCC--------cCHHHHHHHHHHHHHhCCCEEEEECChhHHHHHHHHhCC
Confidence 3356677888887 33 34699999999999 999999999999999999999999999999999999999
Q ss_pred cCCcEEeccCceeeeecCCcCcccC--hHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCC
Q 025916 143 AKGNRAALPSSTIMIKQPIGRIEGQ--ATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGI 220 (246)
Q Consensus 143 ~kgkR~a~Pns~iMiHqp~~~~~G~--a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGL 220 (246)
+ +|++.|++++++|+|..+..|. ..+.+...+.++.+.+.+.+.+++++|++.+++++++.++.||+|+||+++||
T Consensus 80 d--~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~~~~~~~~~~~~~~a~eA~~~GL 157 (161)
T cd00394 80 N--KIVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTEKLEEDIEKDLVLTAQEALEYGL 157 (161)
T ss_pred C--EEEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhcCCcEEcHHHHHHcCC
Confidence 5 8999999999999999776654 47888888999999999999999999999999999999999999999999999
Q ss_pred ceEE
Q 025916 221 IDKV 224 (246)
Q Consensus 221 ID~I 224 (246)
||+|
T Consensus 158 vD~i 161 (161)
T cd00394 158 VDAL 161 (161)
T ss_pred cCcC
Confidence 9986
No 18
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.92 E-value=4.6e-24 Score=182.98 Aligned_cols=149 Identities=17% Similarity=0.226 Sum_probs=128.3
Q ss_pred CCchhHHHHHH---hhCCCCCEEEEEcCCCCCCCCCCCchHHHHHHHHHHhcccCCCEEEEEe---cccchHHHHHHhcc
Q 025916 69 KSKPRSPVITM---YEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCV---GNAWGEAALLLGAG 142 (246)
Q Consensus 69 ~~~a~~iiaqL---~ed~~k~I~LyINSpG~~~~~~~~G~v~~g~aIyd~m~~i~~~V~Ti~~---G~AaS~aa~IlaaG 142 (246)
+..++.+..+| .+++.+.|.|+||||| |+++++..||+.|..++.||.+.|. |.|+|+|++|+++|
T Consensus 12 ~~~~~~l~~~l~~a~~~~~~~vvl~InSpG--------G~v~~~~~i~~~l~~~~kPvia~v~~~~G~AasgG~~iala~ 83 (187)
T cd07020 12 PATADYLERAIDQAEEGGADALIIELDTPG--------GLLDSTREIVQAILASPVPVVVYVYPSGARAASAGTYILLAA 83 (187)
T ss_pred hHHHHHHHHHHHHHHhCCCCEEEEEEECCC--------CCHHHHHHHHHHHHhCCCCEEEEEecCCCCchhHHHHHHHhC
Confidence 45567777777 4455799999999999 9999999999999999999999998 99999999999999
Q ss_pred cCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCce
Q 025916 143 AKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIID 222 (246)
Q Consensus 143 ~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID 222 (246)
+ .|++.|+++|++|+|..+..+...+...+.+.+..... +...|++++|++.+.+++++.+++||+++||+++||||
T Consensus 84 D--~iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~G~~~~~a~~~l~~g~~~~a~eA~~~Glvd 160 (187)
T cd07020 84 H--IAAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVA-YIRSLAELRGRNAEWAEKAVRESLSLTAEEALKLGVID 160 (187)
T ss_pred C--ceeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHcCCeecHHHHHHcCCcc
Confidence 5 79999999999999985544444455555666666654 57789999999999999999999999999999999999
Q ss_pred EEccCC
Q 025916 223 KVLYTE 228 (246)
Q Consensus 223 ~Ii~~~ 228 (246)
+|.+..
T Consensus 161 ~v~~~~ 166 (187)
T cd07020 161 LIAADL 166 (187)
T ss_pred cccCCH
Confidence 998765
No 19
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=99.86 E-value=7.4e-21 Score=162.90 Aligned_cols=143 Identities=20% Similarity=0.210 Sum_probs=119.2
Q ss_pred chhHHHHHH---hhCCCCCEEEEEcCCCCCCCCCCCchHHHHHHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcE
Q 025916 71 KPRSPVITM---YEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNR 147 (246)
Q Consensus 71 ~a~~iiaqL---~ed~~k~I~LyINSpG~~~~~~~~G~v~~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR 147 (246)
.+..+...| .+++.+.|.|+||||| |.++++..||+.|...+.||.+++-|.|+|+|++|+++|+ ++
T Consensus 14 ~~~~l~~~l~~a~~~~~~~ivl~inspG--------G~v~~~~~I~~~l~~~~~pvva~V~g~AaSaG~~ia~a~d--~i 83 (178)
T cd07021 14 LAAFVERALKEAKEEGADAVVLDIDTPG--------GRVDSALEIVDLILNSPIPTIAYVNDRAASAGALIALAAD--EI 83 (178)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEEECcC--------CCHHHHHHHHHHHHhCCCCEEEEECCchHHHHHHHHHhCC--eE
Confidence 344444445 4456799999999999 9999999999999999999999999999999999999994 79
Q ss_pred EeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCC-------------CccCHHH
Q 025916 148 AALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRP-------------KYFSPSE 214 (246)
Q Consensus 148 ~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~~~~~rd-------------~~~sa~E 214 (246)
++.|++.++.|.|.....++..+ +-+.+....+..-|++++|++.+.++++++++ .|||++|
T Consensus 84 ~m~p~a~iG~~~~v~~~~~~~~~-----~K~~~~~~~~~~~~A~~~gr~~~~a~~mv~~~~~v~~~~~~~~~~l~lta~e 158 (178)
T cd07021 84 YMAPGATIGAAEPIPGDGNGAAD-----EKVQSYWRAKMRAAAEKKGRDPDIAEAMVDKDIEVPGVGIKGGELLTLTADE 158 (178)
T ss_pred EECCCCeEecCeeEcCCCccchh-----HHHHHHHHHHHHHHHHHhCCCHHHHHHHhhhhcccccccccccceeeeCHHH
Confidence 99999999999998655443322 12333344455669999999999999999998 5999999
Q ss_pred HHHcCCceEEccCC
Q 025916 215 AVEYGIIDKVLYTE 228 (246)
Q Consensus 215 AleyGLID~Ii~~~ 228 (246)
|+++|++|.|....
T Consensus 159 A~~~g~~d~ia~~~ 172 (178)
T cd07021 159 ALKVGYAEGIAGSL 172 (178)
T ss_pred HHHhCCeEEEECCH
Confidence 99999999997654
No 20
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=99.69 E-value=7.1e-16 Score=130.71 Aligned_cols=140 Identities=21% Similarity=0.173 Sum_probs=117.0
Q ss_pred chhHHHHHH---hhC-CCCCEEEEEcCCCCCCCCCCCchHHHHHHHHHHhccc---CCCEEEEEecccchHHHHHHhccc
Q 025916 71 KPRSPVITM---YED-VEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYV---KPPIFTLCVGNAWGEAALLLGAGA 143 (246)
Q Consensus 71 ~a~~iiaqL---~ed-~~k~I~LyINSpG~~~~~~~~G~v~~g~aIyd~m~~i---~~~V~Ti~~G~AaS~aa~IlaaG~ 143 (246)
..+.+...| .+| ..+.|.|.+|||| |++.....+++.++.+ +.||.+++-|.|+|.|..|+++++
T Consensus 23 ~~~~l~~~l~~a~~d~~v~~vvl~~~~~g--------g~~~~~~~~~~~i~~~~~~~kpVia~v~G~a~g~g~~la~a~D 94 (177)
T cd07014 23 SGDTTAAQIRDARLDPKVKAIVLRVNSPG--------GSVTASEVIRAELAAARAAGKPVVASGGGNAASGGYWISTPAN 94 (177)
T ss_pred CHHHHHHHHHHHhcCCCceEEEEEeeCCC--------cCHHHHHHHHHHHHHHHhCCCCEEEEECCchhHHHHHHHHhCC
Confidence 345556555 334 4588999999999 9988877777766544 689999999999999999999995
Q ss_pred CCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceE
Q 025916 144 KGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDK 223 (246)
Q Consensus 144 kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~ 223 (246)
.|++.|+++|++|.+..+ .+.....+..+.+.+.+.+++.+|++.+++.+++..+.||+|+||+++||||+
T Consensus 95 --~i~a~~~a~~~~~G~~~~-------~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~~GLVD~ 165 (177)
T cd07014 95 --YIVANPSTLVGSIGIFGV-------QLADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANGLVDS 165 (177)
T ss_pred --EEEECCCCeEEEechHhh-------HHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHHcCCccc
Confidence 799999999999876644 12234567889999999999999999999999998899999999999999999
Q ss_pred EccC
Q 025916 224 VLYT 227 (246)
Q Consensus 224 Ii~~ 227 (246)
|...
T Consensus 166 v~~~ 169 (177)
T cd07014 166 LGSF 169 (177)
T ss_pred CCCH
Confidence 9864
No 21
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=99.67 E-value=1.8e-15 Score=131.70 Aligned_cols=146 Identities=19% Similarity=0.219 Sum_probs=116.4
Q ss_pred hhHHHHHH---hhC-CCCCEEEEEcCCCCCCCCCCCchHHHHHHHHHHhcccC--CCEEEEEecccchHHHHHHhcccCC
Q 025916 72 PRSPVITM---YED-VEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVK--PPIFTLCVGNAWGEAALLLGAGAKG 145 (246)
Q Consensus 72 a~~iiaqL---~ed-~~k~I~LyINSpG~~~~~~~~G~v~~g~aIyd~m~~i~--~~V~Ti~~G~AaS~aa~IlaaG~kg 145 (246)
...+...| .+| ..+.|.|++|||| |++..+..|++.|+.++ .||++++.|.|+|.|.+|+++|+
T Consensus 15 ~~~l~~~l~~a~~d~~i~~vvl~~~s~G--------g~~~~~~~l~~~i~~~~~~kpvia~v~g~a~s~g~~la~aaD-- 84 (207)
T TIGR00706 15 PEDFDKKIKRIKDDKSIKALLLRINSPG--------GTVVASEEIYEKLKKLKAKKPVVASMGGVAASGGYYIAMAAD-- 84 (207)
T ss_pred HHHHHHHHHHHhhCCCccEEEEEecCCC--------CCHHHHHHHHHHHHHhcCCCCEEEEECCccchHHHHHHhcCC--
Confidence 34555555 334 4689999999999 99999999999999998 89999999999999999999994
Q ss_pred cEEeccCceee------eecCCc------C------ccc------------ChHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 025916 146 NRAALPSSTIM------IKQPIG------R------IEG------------QATDVEIARKEMKNVKAELVKLYAKHFGK 195 (246)
Q Consensus 146 kR~a~Pns~iM------iHqp~~------~------~~G------------~a~di~i~a~el~~~~~~i~~iya~~Tg~ 195 (246)
+|++.|++.+. -|+... | ..| ...+-+..-+.++...+.|.+.+++..|+
T Consensus 85 ~i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~~~~s~~~~e~~~~~l~~~~~~f~~~va~~R~~ 164 (207)
T TIGR00706 85 EIVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPTRELTPEERDILQNLVNESYEQFVQVVAKGRNL 164 (207)
T ss_pred EEEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 79999999753 333210 0 011 12344455567788899999999999999
Q ss_pred CHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 196 TPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 196 ~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
+.++++++++.. .|+++||+++||||+|...+
T Consensus 165 ~~~~~~~~~~~~-~~~~~~A~~~gLvD~i~~~~ 196 (207)
T TIGR00706 165 PVEDVKKFADGR-VFTGRQALKLRLVDKLGTED 196 (207)
T ss_pred CHHHHHHHhcCC-cccHHHHHHcCCCcccCCHH
Confidence 999999988865 56999999999999997643
No 22
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=99.65 E-value=2.5e-15 Score=130.37 Aligned_cols=147 Identities=18% Similarity=0.201 Sum_probs=117.4
Q ss_pred CchhHHHHHH---h-hCCCCCEEEEEcCCCCCCCCCCCchHHHHHHHHHHhcccC---CCEEEEEecccchHHHHHHhcc
Q 025916 70 SKPRSPVITM---Y-EDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVK---PPIFTLCVGNAWGEAALLLGAG 142 (246)
Q Consensus 70 ~~a~~iiaqL---~-ed~~k~I~LyINSpG~~~~~~~~G~v~~g~aIyd~m~~i~---~~V~Ti~~G~AaS~aa~IlaaG 142 (246)
.....++.+| . ++..+.|.|++|||| |++..+..|++.++.++ .||++++.|.|+|+|.+|+++|
T Consensus 17 ~~~~~l~~~l~~a~~d~~i~~ivl~~~s~G--------g~~~~~~~i~~~i~~~~~~~kpvia~v~g~~~s~g~~lA~aa 88 (208)
T cd07023 17 IGADSLIEQLRKAREDDSVKAVVLRINSPG--------GSVVASEEIYREIRRLRKAKKPVVASMGDVAASGGYYIAAAA 88 (208)
T ss_pred CCHHHHHHHHHHHHhCCCCcEEEEEEECCC--------CCHHHHHHHHHHHHHHHhcCCcEEEEECCcchhHHHHHHhhC
Confidence 4556677777 3 344699999999999 99999999999887664 6999999999999999999999
Q ss_pred cCCcEEeccCcee------eee------------cCCcCccc------------ChHHHHHHHHHHHHHHHHHHHHHHHH
Q 025916 143 AKGNRAALPSSTI------MIK------------QPIGRIEG------------QATDVEIARKEMKNVKAELVKLYAKH 192 (246)
Q Consensus 143 ~kgkR~a~Pns~i------MiH------------qp~~~~~G------------~a~di~i~a~el~~~~~~i~~iya~~ 192 (246)
+ +|++.|++.+ +.| ++.....| ..++.+.....++.+.+.|.+.+++.
T Consensus 89 D--~i~a~~~s~~g~iG~~~~~~~~~~~l~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~~e~~~~~l~~~~~~f~~~Va~~ 166 (208)
T cd07023 89 D--KIVANPTTITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGKDKGSPDRPLTEEERAILQALVDDIYDQFVDVVAEG 166 (208)
T ss_pred C--EEEECCCCeEEeCcEEEecCCHHHHHHhcCCceEEEecCCCccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5 7999999987 333 11111111 23356666778888999999999999
Q ss_pred hCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccC
Q 025916 193 FGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYT 227 (246)
Q Consensus 193 Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~ 227 (246)
+|++.+++.+..+.+. |++++|+++||||+|...
T Consensus 167 R~~~~~~~~~~~~~~~-~~a~~A~~~gLiD~i~~~ 200 (208)
T cd07023 167 RGMSGERLDKLADGRV-WTGRQALELGLVDELGGL 200 (208)
T ss_pred CCCCHHHHHHhcCCcE-EEHHHHHHcCCCcccCCH
Confidence 9999999999888555 579999999999999753
No 23
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=99.62 E-value=1.5e-14 Score=126.38 Aligned_cols=147 Identities=20% Similarity=0.226 Sum_probs=118.4
Q ss_pred CchhHHHHHH---hhC-CCCCEEEEEcCCCCCCCCCCCchHHHHHHHHHHhcccC--CCEEEEEecccchHHHHHHhccc
Q 025916 70 SKPRSPVITM---YED-VEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVK--PPIFTLCVGNAWGEAALLLGAGA 143 (246)
Q Consensus 70 ~~a~~iiaqL---~ed-~~k~I~LyINSpG~~~~~~~~G~v~~g~aIyd~m~~i~--~~V~Ti~~G~AaS~aa~IlaaG~ 143 (246)
.....+++.| .+| ..+.|.|.+|||| |++.....|++.++.++ .||.+++.|.|+|.|.+++++|+
T Consensus 25 ~~~~~l~~~l~~a~~d~~i~~Vvl~~~s~g--------g~~~~~~~l~~~l~~~~~~KpViA~v~g~a~s~gy~lA~~aD 96 (214)
T cd07022 25 TSYEGIAAAIRAALADPDVRAIVLDIDSPG--------GEVAGVFELADAIRAARAGKPIVAFVNGLAASAAYWIASAAD 96 (214)
T ss_pred ccHHHHHHHHHHHhhCCCCcEEEEEEeCCC--------CcHHHHHHHHHHHHHHhcCCCEEEEECCchhhHHHHHHhcCC
Confidence 3455666666 344 4589999999999 99999999999999998 99999999999999999999995
Q ss_pred CCcEEeccCceee------eecCCc------C------ccc------------ChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025916 144 KGNRAALPSSTIM------IKQPIG------R------IEG------------QATDVEIARKEMKNVKAELVKLYAKHF 193 (246)
Q Consensus 144 kgkR~a~Pns~iM------iHqp~~------~------~~G------------~a~di~i~a~el~~~~~~i~~iya~~T 193 (246)
++++.|++.+. .|.... | ..| +..+-+...+.++.+.+.|.+.+++.+
T Consensus 97 --~i~a~~~a~~g~iG~~~~~~~~~~ll~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~re~~~~~l~~~~~~f~~~V~~~R 174 (214)
T cd07022 97 --RIVVTPTAGVGSIGVVASHVDQSKALEKAGLKVTLIFAGAHKVDGNPDEPLSDEARARLQAEVDALYAMFVAAVARNR 174 (214)
T ss_pred --EEEEcCCCeEEeeeEEEecCCHHHHHHhCCCeEEEEEcCCCccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 79999999853 233210 0 011 234455556678889999999999999
Q ss_pred CCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 194 GKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 194 g~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
|++.+++.+.+ ...|+++||+++||||+|...+
T Consensus 175 ~~~~~~~~~~~--~~~~~~~~Al~~gLvD~i~~~~ 207 (214)
T cd07022 175 GLSAAAVRATE--GGVFRGQEAVAAGLADAVGTLD 207 (214)
T ss_pred CCCHHHHHHhh--cCeeeHHHHHHcCCCcccCCHH
Confidence 99999999888 6778999999999999997543
No 24
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=99.61 E-value=1.2e-14 Score=144.23 Aligned_cols=143 Identities=17% Similarity=0.170 Sum_probs=117.2
Q ss_pred hHHHHHH---hhCC-CCCEEEEEcCCCCCCCCCCCchHHHHHHHHHHhcccC---CCEEEEEecccchHHHHHHhcccCC
Q 025916 73 RSPVITM---YEDV-EKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVK---PPIFTLCVGNAWGEAALLLGAGAKG 145 (246)
Q Consensus 73 ~~iiaqL---~ed~-~k~I~LyINSpG~~~~~~~~G~v~~g~aIyd~m~~i~---~~V~Ti~~G~AaS~aa~IlaaG~kg 145 (246)
+.+..+| .+|+ .|.|.|+||||| |++.++..|++.|+.++ .||.+.+.|.|+|.|.+|.++|+
T Consensus 332 ~~~~~~l~~a~~D~~VkaIVLrinSpG--------Gs~~ase~i~~~i~~~~~~gKPVva~~~g~aaSggY~iA~aaD-- 401 (584)
T TIGR00705 332 DTVAALLRVARSDPDIKAVVLRINSPG--------GSVFASEIIRRELARAQARGKPVIVSMGAMAASGGYWIASAAD-- 401 (584)
T ss_pred HHHHHHHHHHhhCCCceEEEEEecCCC--------CCHHHHHHHHHHHHHHHhCCCcEEEEECCccccHHHHHHHhCC--
Confidence 3444455 4454 599999999999 99999999999998653 79999999999999999999995
Q ss_pred cEEeccCcee------eeecCC----------------------cCcc-cChHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 025916 146 NRAALPSSTI------MIKQPI----------------------GRIE-GQATDVEIARKEMKNVKAELVKLYAKHFGKT 196 (246)
Q Consensus 146 kR~a~Pns~i------MiHqp~----------------------~~~~-G~a~di~i~a~el~~~~~~i~~iya~~Tg~~ 196 (246)
++++.|++.+ +.+... .... .+..+.++....++...+.|.+..++.+|++
T Consensus 402 ~I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~s~~~~~t~~~~~~~~~~l~~~y~~F~~~Va~~R~l~ 481 (584)
T TIGR00705 402 YIVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANVSLLRPLTAEDQAIMQLSVEAGYRRFLSVVSAGRNLT 481 (584)
T ss_pred EEEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 7999999976 544211 0011 1456777788889999999999999999999
Q ss_pred HHHHHHHhcCCCccCHHHHHHcCCceEEcc
Q 025916 197 PEQIEADIRRPKYFSPSEAVEYGIIDKVLY 226 (246)
Q Consensus 197 ~e~I~~~~~rd~~~sa~EAleyGLID~Ii~ 226 (246)
.++++++++. +.|+++||+++||||+|..
T Consensus 482 ~e~v~~ia~G-rv~tg~eA~~~GLVD~ig~ 510 (584)
T TIGR00705 482 PTQVDKVAQG-RVWTGEDAVSNGLVDALGG 510 (584)
T ss_pred HHHHHHHHhC-CCcCHHHHHHcCCcccCCC
Confidence 9999998885 5569999999999999964
No 25
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=99.57 E-value=1.3e-13 Score=120.28 Aligned_cols=145 Identities=19% Similarity=0.124 Sum_probs=112.9
Q ss_pred hHHHHHH---hhCC-CCCEEEEEcCCCCCCCCCCCchHHHHHHHHHHhcc---cCCCEEEEEecccchHHHHHHhcccCC
Q 025916 73 RSPVITM---YEDV-EKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGY---VKPPIFTLCVGNAWGEAALLLGAGAKG 145 (246)
Q Consensus 73 ~~iiaqL---~ed~-~k~I~LyINSpG~~~~~~~~G~v~~g~aIyd~m~~---i~~~V~Ti~~G~AaS~aa~IlaaG~kg 145 (246)
..+...| .+|+ .+.|.|.+|||| |++.+...+++.|+. .+.||++++.|.|+|.|.+|+++|+
T Consensus 24 ~~l~~~l~~a~~d~~v~~ivL~~~s~G--------g~~~~~~~~~~~l~~~~~~~kpVia~v~g~a~s~gy~la~~aD-- 93 (211)
T cd07019 24 DTTAAQIRDARLDPKVKAIVLRVNSPG--------GSVTASEVIRAELAAARAAGKPVVVSAGGAAASGGYWISTPAN-- 93 (211)
T ss_pred HHHHHHHHHHhhCCCceEEEEEEcCCC--------cCHHHHHHHHHHHHHHHhCCCCEEEEECCeehhHHHHHHHhCC--
Confidence 3444444 4554 599999999999 999998888887654 4679999999999999999999994
Q ss_pred cEEeccCceeeeecCC------------cC------cc-c----------ChHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 025916 146 NRAALPSSTIMIKQPI------------GR------IE-G----------QATDVEIARKEMKNVKAELVKLYAKHFGKT 196 (246)
Q Consensus 146 kR~a~Pns~iMiHqp~------------~~------~~-G----------~a~di~i~a~el~~~~~~i~~iya~~Tg~~ 196 (246)
++++.|++++...-.. .| .. | .+++-+.....++.+.+.+.+..++.++++
T Consensus 94 ~i~a~~~a~~gsiGv~~~~~~~~~~l~k~Gv~~~~~~~~g~~k~~~~~~~s~e~r~~~~~~ld~~~~~f~~~Va~~R~~~ 173 (211)
T cd07019 94 YIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRALPPEAQLGLQLSIENGYKRFITLVADARHST 173 (211)
T ss_pred EEEEcCCCEEEEeEEEEEcCCHHHHHHhcCCceEEEEecCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 7999999887432110 00 00 1 122333445678899999999999999999
Q ss_pred HHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 197 PEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 197 ~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
++++++..+ +.+|+++||+++||||+|...+
T Consensus 174 ~~~l~~~~~-~~~~~~~~A~~~GLvD~i~~~~ 204 (211)
T cd07019 174 PEQIDKIAQ-GHVWTGQDAKANGLVDSLGDFD 204 (211)
T ss_pred HHHHHHhcC-CcEEeHHHHHHcCCcccCCCHH
Confidence 999999765 6899999999999999998644
No 26
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.55 E-value=6.9e-14 Score=129.53 Aligned_cols=145 Identities=20% Similarity=0.207 Sum_probs=115.6
Q ss_pred HHHHHH-hhCCCCCEEEEEcCCCCCCCCCCCchHHHHHHHHHHhcccCC--CEEEEEecccchHHHHHHhcccCCcEEec
Q 025916 74 SPVITM-YEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKP--PIFTLCVGNAWGEAALLLGAGAKGNRAAL 150 (246)
Q Consensus 74 ~iiaqL-~ed~~k~I~LyINSpG~~~~~~~~G~v~~g~aIyd~m~~i~~--~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~ 150 (246)
.++.++ .+++.|+|.|.||||| |++.++..||+.++.++. ||++++-++|||.|.+|.++++ +.++.
T Consensus 87 ~~l~~~~~~~~vk~vvL~inSPG--------G~v~as~~i~~~l~~l~~~~PV~v~v~~~AASGGY~IA~aAd--~I~a~ 156 (317)
T COG0616 87 EILRAARADPSVKAVVLRINSPG--------GSVVASELIARALKRLRAKKPVVVSVGGYAASGGYYIALAAD--KIVAD 156 (317)
T ss_pred HHHHHHhcCCCCceEEEEEECcC--------CchhHHHHHHHHHHHHhhcCCEEEEECCeecchhhhhhccCC--EEEec
Confidence 333344 4455899999999999 999999999999999975 6999999999999999999994 79999
Q ss_pred cCcee------eeecCC-----------------------cCccc-ChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Q 025916 151 PSSTI------MIKQPI-----------------------GRIEG-QATDVEIARKEMKNVKAELVKLYAKHFGKTPEQI 200 (246)
Q Consensus 151 Pns~i------MiHqp~-----------------------~~~~G-~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I 200 (246)
|+|.+ +.|... ..+.. ...+.++.-++++...+.|.+..++.++.+.+++
T Consensus 157 p~si~GSIGVi~~~~~~~~l~~k~Gv~~~~~~ag~~k~~~~~~~~~t~e~~~~~q~~~~e~y~~F~~~V~~~R~~~~~~~ 236 (317)
T COG0616 157 PSSITGSIGVISGAPNFEELLEKLGVEKEVITAGEYKDILSPFRPLTEEEREILQKEIDETYDEFVDKVAEGRGLSDEAV 236 (317)
T ss_pred CCceeeeceeEEecCCHHHHHHhcCCceeeeeccccccccCcccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHH
Confidence 99974 333221 01112 2344445557888999999999999999999996
Q ss_pred HHHhcCCCccCHHHHHHcCCceEEccCCC
Q 025916 201 EADIRRPKYFSPSEAVEYGIIDKVLYTEK 229 (246)
Q Consensus 201 ~~~~~rd~~~sa~EAleyGLID~Ii~~~~ 229 (246)
.+..+ ++.+++++|++.||||++.+..+
T Consensus 237 ~~~a~-g~v~~g~~A~~~gLVDelg~~~~ 264 (317)
T COG0616 237 DKLAT-GRVWTGQQALELGLVDELGGLDD 264 (317)
T ss_pred HHHhc-cceecHHHhhhcCCchhcCCHHH
Confidence 66666 78888999999999999987543
No 27
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=99.45 E-value=1.6e-12 Score=114.29 Aligned_cols=148 Identities=19% Similarity=0.177 Sum_probs=116.4
Q ss_pred CCchhHHHHHH---hhCC-CCCEEEEEcCCCCCCCCCCCchHHHHHHHHHHhccc---CCCEEEEEecccchHHHHHHhc
Q 025916 69 KSKPRSPVITM---YEDV-EKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYV---KPPIFTLCVGNAWGEAALLLGA 141 (246)
Q Consensus 69 ~~~a~~iiaqL---~ed~-~k~I~LyINSpG~~~~~~~~G~v~~g~aIyd~m~~i---~~~V~Ti~~G~AaS~aa~Ilaa 141 (246)
......++.+| .+|+ .+.|.|.+|||| |.+.+...|++.|+.+ +.||.+++.| |+|.|.+|.++
T Consensus 28 ~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~g--------g~~~~~~el~~~i~~~~~~~kpVia~~~~-~~sggy~lasa 98 (222)
T cd07018 28 ELSLRDLLEALEKAAEDDRIKGIVLDLDGLS--------GGLAKLEELRQALERFRASGKPVIAYADG-YSQGQYYLASA 98 (222)
T ss_pred CccHHHHHHHHHHHhcCCCeEEEEEECCCCC--------CCHHHHHHHHHHHHHHHHhCCeEEEEeCC-CCchhhhhhhh
Confidence 34556677776 4454 599999999999 9999999999999765 4799999887 88999999999
Q ss_pred ccCCcEEeccCceeeeecCCcC------------------ccc--------------ChHHHHHHHHHHHHHHHHHHHHH
Q 025916 142 GAKGNRAALPSSTIMIKQPIGR------------------IEG--------------QATDVEIARKEMKNVKAELVKLY 189 (246)
Q Consensus 142 G~kgkR~a~Pns~iMiHqp~~~------------------~~G--------------~a~di~i~a~el~~~~~~i~~iy 189 (246)
++ ++++.|++.+.+.-.... ..| +..+-+...+.++.+.+.+.+..
T Consensus 99 ad--~I~a~p~~~vg~iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~~~~~~~~~~~s~~~r~~~~~~l~~~~~~f~~~V 176 (222)
T cd07018 99 AD--EIYLNPSGSVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDMSPEAREQTQALLDSLWDQYLADV 176 (222)
T ss_pred CC--EEEECCCceEEeeccchhhhhHHHHHHHcCCcEEEEEEeccccccchhhcccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 84 799999999987633210 011 12233344566777899999999
Q ss_pred HHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 190 AKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 190 a~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
++..|++.+++++..+ ...+++++|++.||||+|....
T Consensus 177 a~~R~~~~~~~~~~~~-~~~~~~~~A~~~GLvD~i~~~~ 214 (222)
T cd07018 177 AASRGLSPDALEALID-LGGDSAEEALEAGLVDGLAYRD 214 (222)
T ss_pred HHHcCCCHHHHHHHHH-cCCcHHHHHHHCCCCCcCCcHH
Confidence 9999999999999888 6789999999999999998543
No 28
>PRK10949 protease 4; Provisional
Probab=99.44 E-value=1.9e-12 Score=129.40 Aligned_cols=145 Identities=19% Similarity=0.198 Sum_probs=114.0
Q ss_pred hHHHHHH----hhCCCCCEEEEEcCCCCCCCCCCCchHHHHHHHHHHhcccC---CCEEEEEecccchHHHHHHhcccCC
Q 025916 73 RSPVITM----YEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVK---PPIFTLCVGNAWGEAALLLGAGAKG 145 (246)
Q Consensus 73 ~~iiaqL----~ed~~k~I~LyINSpG~~~~~~~~G~v~~g~aIyd~m~~i~---~~V~Ti~~G~AaS~aa~IlaaG~kg 145 (246)
+.++.+| .++..|.|.|.||||| |++.+...|++.++..+ .||++.+-|+|||.|.+|.++++
T Consensus 350 ~~~~~~l~~a~~D~~vkaVvLrInSpG--------Gs~~ase~i~~~i~~~r~~gKPVvas~~~~aASggY~iA~aad-- 419 (618)
T PRK10949 350 DTTAAQIRDARLDPKVKAIVLRVNSPG--------GSVTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPAN-- 419 (618)
T ss_pred HHHHHHHHHHHhCCCCcEEEEEecCCC--------CcHHHHHHHHHHHHHHHhcCCcEEEEECCCCccHHHHHHHhcC--
Confidence 4556666 3445699999999999 99999999999997663 79999999999999999999994
Q ss_pred cEEeccCcee------eeecCCc------C------ccc-----------ChHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 025916 146 NRAALPSSTI------MIKQPIG------R------IEG-----------QATDVEIARKEMKNVKAELVKLYAKHFGKT 196 (246)
Q Consensus 146 kR~a~Pns~i------MiHqp~~------~------~~G-----------~a~di~i~a~el~~~~~~i~~iya~~Tg~~ 196 (246)
+.++.|.+.+ +.|.-.. | ..| ...+-+.....++...+.|.+..++..|++
T Consensus 420 ~I~a~p~t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~~~~~~~~~~~~s~e~~~~~q~~ld~~y~~F~~~Va~~R~~~ 499 (618)
T PRK10949 420 YIVASPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSPLADVSITKALPPEFQQMMQLSIENGYKRFITLVADSRHKT 499 (618)
T ss_pred EEEECCCCceeeCcEEEEccCHHHHHHhcCCceeEEeccccCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 7899997753 3332110 0 011 123344445678888999999999999999
Q ss_pred HHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 197 PEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 197 ~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
.+++++..+ ++.+++++|++.||||++...+
T Consensus 500 ~~~v~~ia~-Grv~tg~~A~~~GLVD~lG~~~ 530 (618)
T PRK10949 500 PEQIDKIAQ-GHVWTGQDAKANGLVDSLGDFD 530 (618)
T ss_pred HHHHHHHhc-CCcccHHHHHHcCCCccCCCHH
Confidence 999998766 6899999999999999998644
No 29
>PRK11778 putative inner membrane peptidase; Provisional
Probab=99.30 E-value=1e-10 Score=109.16 Aligned_cols=143 Identities=13% Similarity=0.094 Sum_probs=100.5
Q ss_pred hHHHHHHh-hCCCCCEEEEEcCCCCCCCCCCCchHHHHHHHHHH---hcccCCCEEEEEecccchHHHHHHhcccCCcEE
Q 025916 73 RSPVITMY-EDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDV---MGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRA 148 (246)
Q Consensus 73 ~~iiaqL~-ed~~k~I~LyINSpG~~~~~~~~G~v~~g~aIyd~---m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~ 148 (246)
+.+.+.|. ..+.+.|.|.||||| |+|...--++.. ++..+.||++++.++|||.|.++.+++ ++.+
T Consensus 111 e~i~a~l~~A~~~~aVvLridSpG--------G~v~~s~~a~~~l~~lr~~~kpVva~v~~~AASggY~iAsaA--D~I~ 180 (330)
T PRK11778 111 EEITAILAVAKPGDEVLLRLESPG--------GVVHGYGLAASQLQRLRDAGIPLTVAVDKVAASGGYMMACVA--DKII 180 (330)
T ss_pred HHHHHHHHhccCCCeEEEEEeCCC--------CchhHHHHHHHHHHHHHhcCCCEEEEECCchhhHHHHHHHhC--CEEE
Confidence 44555552 233478999999999 998774444444 444457999999999999999999999 4789
Q ss_pred eccCceeeee-----cCC----------------cC-c------cc--ChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Q 025916 149 ALPSSTIMIK-----QPI----------------GR-I------EG--QATDVEIARKEMKNVKAELVKLYAKHFGKTPE 198 (246)
Q Consensus 149 a~Pns~iMiH-----qp~----------------~~-~------~G--~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e 198 (246)
+.|.+.+... .|. .| + .+ +..+-+..-++++.+.+.|.+..+++.+ ..
T Consensus 181 A~P~a~vGSIGVi~~~~~~~~lLeKlGI~~evi~aG~yK~a~~pf~~~see~Re~~q~~Ld~~y~~F~~~Va~~R~--~l 258 (330)
T PRK11778 181 AAPFAIVGSIGVVAQIPNFHRLLKKHDIDVELHTAGEYKRTLTLFGENTEEGREKFREELEETHQLFKDFVQRYRP--QL 258 (330)
T ss_pred ECCCCeEEeeeeeeeccCHHHHHHHCCCceEEEEecCccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCC--cC
Confidence 9999875431 110 00 0 11 2334455566788888999999998775 23
Q ss_pred HHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 199 QIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 199 ~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
++++..+ +..+++++|+++||||+|...+
T Consensus 259 ~~~~va~-G~v~~g~~Al~~GLVD~Ig~~d 287 (330)
T PRK11778 259 DIDKVAT-GEHWYGQQALELGLVDEIQTSD 287 (330)
T ss_pred CHHHHHh-CCCcCHHHHHHCCCCCcCCCHH
Confidence 4555555 4667899999999999998754
No 30
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=99.10 E-value=2.6e-09 Score=97.17 Aligned_cols=151 Identities=18% Similarity=0.141 Sum_probs=106.8
Q ss_pred ccccccCCCCCCCchhHHHHHHhh-CCCCCEEEEEcCCCCCCCCCCCchHHHHHHHHHHhcccCCCEEEEEecccchHHH
Q 025916 58 RPDCLNPDSFCKSKPRSPVITMYE-DVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAA 136 (246)
Q Consensus 58 i~s~Ll~~RIi~~~a~~iiaqL~e-d~~k~I~LyINSpG~~~~~~~~G~v~~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa 136 (246)
++..-....|-.+.++.+...+.+ .+.++|.|.||||| |.+.++..|.+.++..+.++++++-..|.|+|+
T Consensus 63 ~~giPi~~~I~i~dse~v~raI~~~~~~~~IdLii~TpG--------G~v~AA~~I~~~l~~~~~~v~v~VP~~A~SAGT 134 (285)
T PF01972_consen 63 FLGIPIYRYIDIDDSEFVLRAIREAPKDKPIDLIIHTPG--------GLVDAAEQIARALREHPAKVTVIVPHYAMSAGT 134 (285)
T ss_pred eeccccceeEcHhhHHHHHHHHHhcCCCCceEEEEECCC--------CcHHHHHHHHHHHHhCCCCEEEEECcccccHHH
Confidence 333333333335677788888844 45689999999999 999999999999999999999999999999999
Q ss_pred HHHhcccCCcEEeccCceeeeecCCcCcc------------c--ChHHH-----HHHHHHHHHHHHHHHHHHHHHhCCCH
Q 025916 137 LLLGAGAKGNRAALPSSTIMIKQPIGRIE------------G--QATDV-----EIARKEMKNVKAELVKLYAKHFGKTP 197 (246)
Q Consensus 137 ~IlaaG~kgkR~a~Pns~iMiHqp~~~~~------------G--~a~di-----~i~a~el~~~~~~i~~iya~~Tg~~~ 197 (246)
+|.++++ +-++.|+|.+-=-.|..+-. + ..+|- .+..+.+..+++...+++.++. +.
T Consensus 135 lIALaAD--eIvM~p~a~LGpiDPqi~~~pA~sil~~~~~K~~~~i~D~tlIladia~KAi~q~~~~v~~lL~~~~--~~ 210 (285)
T PF01972_consen 135 LIALAAD--EIVMGPGAVLGPIDPQIGQYPAASILKAVEQKPPDEIDDQTLILADIAEKAIRQVREFVKELLKDKM--DE 210 (285)
T ss_pred HHHHhCC--eEEECCCCccCCCCccccCCChHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CH
Confidence 9999994 78999999986444432210 0 11110 1123455666666677776654 44
Q ss_pred HHHH---HHhcC-----CCccCHHHHHHcCC
Q 025916 198 EQIE---ADIRR-----PKYFSPSEAVEYGI 220 (246)
Q Consensus 198 e~I~---~~~~r-----d~~~sa~EAleyGL 220 (246)
|+.+ +.+.. |+-+|++||+++||
T Consensus 211 eka~~ia~~L~~g~~tHdypi~~eea~~lGL 241 (285)
T PF01972_consen 211 EKAEEIAEKLSSGKWTHDYPITVEEAKELGL 241 (285)
T ss_pred HHHHHHHHHhcCCCCCCCCCCCHHHHHHcCC
Confidence 5444 44444 44599999999998
No 31
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=98.98 E-value=6.2e-09 Score=86.72 Aligned_cols=109 Identities=20% Similarity=0.210 Sum_probs=80.4
Q ss_pred cccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCC---------------------cC-------ccc--
Q 025916 117 GYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI---------------------GR-------IEG-- 166 (246)
Q Consensus 117 ~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~---------------------~~-------~~G-- 166 (246)
+..+.||++++.|.++|.+.+|+++| ++.++.|.+.+...-.. .+ ...
T Consensus 3 ~~~~KpV~a~~~~~~~S~~Y~lAs~a--d~I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~~ 80 (154)
T PF01343_consen 3 KASGKPVVAYAEGYAASGAYYLASAA--DEIYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDPM 80 (154)
T ss_dssp HHTT--EEEEEEEEEETHHHHHHTTS--SEEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS-
T ss_pred cccCCeEEEEECCcchhHHHHHHHcC--CEEEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCCC
Confidence 45568999999999999999999999 47899999987543221 00 011
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 167 QATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 167 ~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
...+-+..-+.++.+.+.+.+..++..|++.++++++.+. ..|+++||+++||||+|...+
T Consensus 81 s~~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~v~~~~~~-~~~~~~~A~~~GLiD~i~~~~ 141 (154)
T PF01343_consen 81 SEEERENLQELLDELYDQFVNDVAEGRGLSPDDVEEIADG-GVFTAQQALELGLIDEIGTFD 141 (154)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHCHHCC-HEEEHHHHHHTTSSSEETSHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHhh-ccccHHHHHHcCchhhcCCHH
Confidence 2244455567788899999999999999999999999885 888999999999999997543
No 32
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=6.7e-09 Score=99.58 Aligned_cols=150 Identities=17% Similarity=0.195 Sum_probs=115.4
Q ss_pred cCCCCCCCchhHHHHHH---hhCCCCCEEEEEcCCCCCCCCCCCchHHHHHHHHHHhcccCCCEEEEEe---cccchHHH
Q 025916 63 NPDSFCKSKPRSPVITM---YEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCV---GNAWGEAA 136 (246)
Q Consensus 63 l~~RIi~~~a~~iiaqL---~ed~~k~I~LyINSpG~~~~~~~~G~v~~g~aIyd~m~~i~~~V~Ti~~---G~AaS~aa 136 (246)
.++-|-+..++.+...| .++....+.|.+|+|| |-+.+...|...+...+.||..++. +.|+|+|+
T Consensus 33 i~g~I~~~s~~~l~r~l~~A~~~~a~~vvl~ldTPG--------Gl~~sm~~iv~~i~~s~vPV~~yv~p~ga~AaSAGt 104 (436)
T COG1030 33 IDGAIDPASADYLQRALQSAEEENAAAVVLELDTPG--------GLLDSMRQIVRAILNSPVPVIGYVVPDGARAASAGT 104 (436)
T ss_pred ecCccCHHHHHHHHHHHHHHHhCCCcEEEEEecCCC--------chHHHHHHHHHHHHcCCCCEEEEEcCCCcchhchhh
Confidence 33333355666666666 3455689999999999 9999999999999999999888877 47999999
Q ss_pred HHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCccCHHHHH
Q 025916 137 LLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAV 216 (246)
Q Consensus 137 ~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~~~~~rd~~~sa~EAl 216 (246)
+|+.+.+ .-+|-|.+.+---+|-.+....+.+-. ..+.-..+..-.++..|+..+..++...++.-++++||.
T Consensus 105 yI~m~~h--iaaMAPgT~iGaa~Pi~~~g~~~~~~~-----~~n~~~ay~~~~A~~~gRN~~~ae~~v~~~~~l~a~eA~ 177 (436)
T COG1030 105 YILMATH--IAAMAPGTNIGAATPIAGGGTSAKEAN-----TTNAAVAYIRSLAEERGRNPTWAERFVTENLSLTAEEAL 177 (436)
T ss_pred HHHHhcC--hhhhCCCCcccccceecCCCCCccchh-----hHHHHHHHHHHHHHHcCCChHHHHHHhhhccCCChhHHH
Confidence 9999985 567889999988888654322122211 222223444557888999999999999999999999999
Q ss_pred HcCCceEEccC
Q 025916 217 EYGIIDKVLYT 227 (246)
Q Consensus 217 eyGLID~Ii~~ 227 (246)
++|+||-|-.+
T Consensus 178 ~~~vid~iA~~ 188 (436)
T COG1030 178 RQGVIDLIARD 188 (436)
T ss_pred hcCccccccCC
Confidence 99999987654
No 33
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=98.72 E-value=1.9e-07 Score=93.24 Aligned_cols=148 Identities=7% Similarity=-0.010 Sum_probs=109.1
Q ss_pred CchhHHHHHH---hhCC-CCCEEEEEcC-CCCCCCCCCCchHHHHHHHHHHhcccC---CCEEEEEecccchHHHHHHhc
Q 025916 70 SKPRSPVITM---YEDV-EKPIYLYINS-TGTTKGGEKLGYETEAFAIYDVMGYVK---PPIFTLCVGNAWGEAALLLGA 141 (246)
Q Consensus 70 ~~a~~iiaqL---~ed~-~k~I~LyINS-pG~~~~~~~~G~v~~g~aIyd~m~~i~---~~V~Ti~~G~AaS~aa~Ilaa 141 (246)
....+++.+| .+|+ -+.|.|.||+ || |++.....|++.++..+ +||+++..+. +|.+.+|.++
T Consensus 76 ~~l~~i~~~i~~A~~D~~IkgIvL~i~~~~g--------~~~~~~~ei~~ai~~fk~sgKpVvA~~~~~-~s~~YylAs~ 146 (584)
T TIGR00705 76 ISLFDIVNAIRQAADDRRIEGLVFDLSNFSG--------WDSPHLVEIGSALSEFKDSGKPVYAYGTNY-SQGQYYLASF 146 (584)
T ss_pred cCHHHHHHHHHHHhcCCCceEEEEEccCCCC--------CCHHHHHHHHHHHHHHHhcCCeEEEEEccc-cchhhhhhhh
Confidence 4556788888 4444 5999999996 57 77777889999998764 7899887654 5666666666
Q ss_pred ccCCcEEeccCceeeeecCC---------------------cC--------c-cc--ChHHHHHHHHHHHHHHHHHHHHH
Q 025916 142 GAKGNRAALPSSTIMIKQPI---------------------GR--------I-EG--QATDVEIARKEMKNVKAELVKLY 189 (246)
Q Consensus 142 G~kgkR~a~Pns~iMiHqp~---------------------~~--------~-~G--~a~di~i~a~el~~~~~~i~~iy 189 (246)
+ ++.|+.|...+.++-.. .| + +. ...+-+.....++.+.+.+.+..
T Consensus 147 A--D~I~~~p~G~v~~~G~~~~~~~~k~~ldKlGV~~~v~r~G~yKsa~epf~r~~mS~e~re~~~~~l~~l~~~f~~~V 224 (584)
T TIGR00705 147 A--DEIILNPMGSVDLHGFYTETLFYKGMLDKLGVRWHXFRVGTYKGAVEPFSRKDMSPEARRNYQRWLGELWQNYLSSV 224 (584)
T ss_pred C--CEEEECCCceEEeeceecccccHHHHHHHcCCeEEEeeccccccccCcccCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 57899999888664221 01 1 01 23333445567788899999999
Q ss_pred HHHhCCCHHHHHHHhcCCCc-------cCHHHHHHcCCceEEccCC
Q 025916 190 AKHFGKTPEQIEADIRRPKY-------FSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 190 a~~Tg~~~e~I~~~~~rd~~-------~sa~EAleyGLID~Ii~~~ 228 (246)
++..+++.+++.+..+.-.| .+|++|++.||||+|...+
T Consensus 225 a~~R~l~~~~~~~~a~~~~~~~~~~~g~~a~~A~~~gLVD~l~~~d 270 (584)
T TIGR00705 225 SRNRAIPVQQLAPYAQGLLELLQKLNGDGARYALAEKLVTAVCSYA 270 (584)
T ss_pred HHHCCCCHHHHHHHHhHHHHHHHhhCCchHHHHHHCCCcccCCCHH
Confidence 99999999999988875333 2899999999999997543
No 34
>PRK10949 protease 4; Provisional
Probab=98.53 E-value=1.4e-06 Score=87.63 Aligned_cols=147 Identities=12% Similarity=0.071 Sum_probs=101.1
Q ss_pred chhHHHHHH---hhC-CCCCEEEEEcCCCCCCCCCCCchHHHH-HHHHHHhcccC---CCEEEEEecccchHHHHHHhcc
Q 025916 71 KPRSPVITM---YED-VEKPIYLYINSTGTTKGGEKLGYETEA-FAIYDVMGYVK---PPIFTLCVGNAWGEAALLLGAG 142 (246)
Q Consensus 71 ~a~~iiaqL---~ed-~~k~I~LyINSpG~~~~~~~~G~v~~g-~aIyd~m~~i~---~~V~Ti~~G~AaS~aa~IlaaG 142 (246)
.-.+++..| .+| .-+.|.|.||||| |...+. ..|++.|+..+ .||+++ ...+++.+.+|.+++
T Consensus 96 ~l~div~~i~~Aa~D~rIkgivL~i~s~g--------G~~~a~~~eI~~ai~~fk~sGKpVvA~-~~~~~s~~YyLASaA 166 (618)
T PRK10949 96 SLFDIVNTIRQAKDDRNITGIVLDLKNFA--------GADQPSMQYIGKALREFRDSGKPVYAV-GDSYSQGQYYLASFA 166 (618)
T ss_pred cHHHHHHHHHHHhcCCCceEEEEEeCCCC--------CccHHHHHHHHHHHHHHHHhCCeEEEE-ecCccchhhhhhhhC
Confidence 445777777 344 4599999999998 765544 68999887775 688875 333345555555555
Q ss_pred cCCcEEeccCceeeeecCCcC-----------------------------c-cc--ChHHHHHHHHHHHHHHHHHHHHHH
Q 025916 143 AKGNRAALPSSTIMIKQPIGR-----------------------------I-EG--QATDVEIARKEMKNVKAELVKLYA 190 (246)
Q Consensus 143 ~kgkR~a~Pns~iMiHqp~~~-----------------------------~-~G--~a~di~i~a~el~~~~~~i~~iya 190 (246)
++.|+.|...+.++-.... + +. ...+-+.....+..+.+.+.+..+
T Consensus 167 --D~I~l~P~G~v~~~G~~~~~~~~k~lLdKlGV~~~v~r~G~yKsA~epf~r~~mS~e~Re~~~~ll~~l~~~f~~~VA 244 (618)
T PRK10949 167 --NKIYLSPQGVVDLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVA 244 (618)
T ss_pred --CEEEECCCceEEEeeeecchhhHHHHHHHcCCeEEEEEecCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999988876543210 1 01 122233344567788899999999
Q ss_pred HHhCCCHHHHHHHhcC-------CCccCHHHHHHcCCceEEccCC
Q 025916 191 KHFGKTPEQIEADIRR-------PKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 191 ~~Tg~~~e~I~~~~~r-------d~~~sa~EAleyGLID~Ii~~~ 228 (246)
+..+++.+++....++ ---++|++|++.||||+|....
T Consensus 245 ~~R~l~~~~v~~~a~~~~~~l~~~~~~~a~~Al~~GLVD~l~~~d 289 (618)
T PRK10949 245 ANRQITPQQLFPGAQGILEGLTKVGGDTAKYALDNKLVDALASSA 289 (618)
T ss_pred HHcCCCHHHHHHHHHHHHHhhhhcCCccHHHHHHCCCCCcCCCHH
Confidence 9999999999644332 1236899999999999998653
No 35
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=98.23 E-value=6.4e-06 Score=79.13 Aligned_cols=123 Identities=19% Similarity=0.289 Sum_probs=78.5
Q ss_pred hhCCCCCEEEEEcCCCCCCC--CCCCchHHHHHHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeee
Q 025916 80 YEDVEKPIYLYINSTGTTKG--GEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMI 157 (246)
Q Consensus 80 ~ed~~k~I~LyINSpG~~~~--~~~~G~v~~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMi 157 (246)
.+.-.-||.-+|||||...+ -|.-|...+.......|-..+.|+.++++|.++|.|++.+++| +..+++||+.+.+
T Consensus 217 Aekf~lPIVtLVDTpGA~pG~~AEe~Gqa~aIAr~l~ams~l~VPiISVViGeGgSGGAlalg~a--D~VlMle~A~ysV 294 (431)
T PLN03230 217 AEKFGFPILTFVDTPGAYAGIKAEELGQGEAIAFNLREMFGLRVPIIATVIGEGGSGGALAIGCG--NRMLMMENAVYYV 294 (431)
T ss_pred HHHcCCCEEEEEeCCCcCCCHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEeCCCCcHHHHHhhcC--CEEEEecCCEEEe
Confidence 44557899999999994311 0111222222222334456678999999999999999999888 4789999999877
Q ss_pred ecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCCCCC
Q 025916 158 KQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKSP 231 (246)
Q Consensus 158 Hqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~~~~ 231 (246)
=.|.+.. .+.++. ..+. ++-.+ ..-+||+++++.|+||+|+..+...
T Consensus 295 isPEgaA-------sILwkd---------------~~~A-~eAAe----alkitA~dL~~~GiID~II~Ep~gg 341 (431)
T PLN03230 295 ASPEACA-------AILWKS---------------AAAA-PKAAE----ALRITAAELVKLGVVDEIVPEPLGG 341 (431)
T ss_pred cCHHHHH-------HHHhcc---------------ccch-HHHHH----HcCCCHHHHHhCCCCeEeccCCCCC
Confidence 6665321 000000 0000 11111 2268999999999999999877543
No 36
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=98.22 E-value=2.2e-05 Score=66.33 Aligned_cols=102 Identities=18% Similarity=0.191 Sum_probs=72.4
Q ss_pred HHHHHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHH
Q 025916 107 TEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELV 186 (246)
Q Consensus 107 ~~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~ 186 (246)
.....++..+...+.|+.+.+-|.|.+.|+.+++++ +.|++.++++|.+..+..|..-..-- .
T Consensus 80 ~~~~~~~~~i~~~~~p~Ia~v~G~a~g~G~~la~~~--D~~i~~~~~~~~~pe~~~G~~p~~g~---------------~ 142 (195)
T cd06558 80 RELQELLRALLRLPKPVIAAVNGAALGGGLELALAC--DIRIAAEDAKFGLPEVKLGLVPGGGG---------------T 142 (195)
T ss_pred HHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhC--CEEEecCCCEEechhhhcCCCCCCcH---------------H
Confidence 344667777778899999999999999999999998 58999999998876665443200000 1
Q ss_pred HHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccC
Q 025916 187 KLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYT 227 (246)
Q Consensus 187 ~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~ 227 (246)
..+.+..| .....+.+-.++.++++||+++||||++.+.
T Consensus 143 ~~l~~~~g--~~~a~~~~l~g~~~~a~ea~~~Glv~~~~~~ 181 (195)
T cd06558 143 QRLPRLVG--PARARELLLTGRRISAEEALELGLVDEVVPD 181 (195)
T ss_pred HHHHHHhC--HHHHHHHHHcCCccCHHHHHHcCCCCeecCh
Confidence 11222212 3333444445788999999999999999975
No 37
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=98.18 E-value=2.2e-05 Score=73.33 Aligned_cols=123 Identities=24% Similarity=0.312 Sum_probs=82.2
Q ss_pred hhCCCCCEEEEEcCCCCCC--CCCCCchHHHHHHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeee
Q 025916 80 YEDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMI 157 (246)
Q Consensus 80 ~ed~~k~I~LyINSpG~~~--~~~~~G~v~~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMi 157 (246)
.+.-.-||.-.|||||... .-|.-|....+.....+|-..+.|+.++++|.++|.|++.++.+ +..+++|++.+.+
T Consensus 147 A~~f~lPIVtlvDTpGa~~G~~aE~~G~~~aia~~l~~~a~~~VP~IsVIiGeg~sGGAla~~~a--D~v~m~~~A~~sv 224 (319)
T PRK05724 147 AEKFGLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIICTVIGEGGSGGALAIGVG--DRVLMLEYSTYSV 224 (319)
T ss_pred HHHcCCCEEEEEeCCCCCCCHHHHhccHHHHHHHHHHHHhCCCCCEEEEEeCCccHHHHHHHhcc--CeeeeecCceEee
Confidence 4455789999999999442 11112333333444555667789999999999999999888877 5789999999887
Q ss_pred ecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCCCCC
Q 025916 158 KQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKSP 231 (246)
Q Consensus 158 Hqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~~~~ 231 (246)
=.|.+... +..+ ... ..++..+ -..+||+++++.|+||+|+..+...
T Consensus 225 isPEg~a~-------Il~~---------------~~~-~a~~aae----~~~ita~~l~~~g~iD~II~Ep~gg 271 (319)
T PRK05724 225 ISPEGCAS-------ILWK---------------DAS-KAPEAAE----AMKITAQDLKELGIIDEIIPEPLGG 271 (319)
T ss_pred cCHHHHHH-------HHhc---------------Cch-hHHHHHH----HcCCCHHHHHHCCCceEeccCCCCC
Confidence 77764211 0000 001 1222222 3347999999999999999876443
No 38
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=98.17 E-value=1.1e-05 Score=73.11 Aligned_cols=120 Identities=23% Similarity=0.342 Sum_probs=78.5
Q ss_pred hhCCCCCEEEEEcCCCCCC--CCCCCchHHHHHHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeee
Q 025916 80 YEDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMI 157 (246)
Q Consensus 80 ~ed~~k~I~LyINSpG~~~--~~~~~G~v~~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMi 157 (246)
.+.-.-||.-.+||||..- .-|.-|...........|-..+.|+.++++|.|+|.|++.++.+ +..++.|++.+.+
T Consensus 94 A~~~~lPvV~lvDtpGa~~g~~aE~~G~~~~ia~~~~~~s~~~VP~IsVI~G~~~gGgA~a~~~~--D~v~m~~~a~~~v 171 (256)
T PRK12319 94 AEKFGRPVVTFINTAGAYPGVGAEERGQGEAIARNLMEMSDLKVPIIAIIIGEGGSGGALALAVA--DQVWMLENTMYAV 171 (256)
T ss_pred HHHcCCCEEEEEECCCcCCCHhHHhccHHHHHHHHHHHHhCCCCCEEEEEeCCcCcHHHHHhhcC--CEEEEecCceEEE
Confidence 4445789999999999432 11111322222333344455678999999999999999999877 5789999999888
Q ss_pred ecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 158 KQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 158 Hqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
=.|.+... +..+ . ....++..+.+ -+||.++.+.|+||+|++..
T Consensus 172 ~~pe~~a~-------il~~--------------~--~~~a~~aa~~~----~~~a~~l~~~g~iD~ii~e~ 215 (256)
T PRK12319 172 LSPEGFAS-------ILWK--------------D--GSRATEAAELM----KITAGELLEMGVVDKVIPEH 215 (256)
T ss_pred cCHHHHHH-------HHhc--------------C--cccHHHHHHHc----CCCHHHHHHCCCCcEecCCC
Confidence 77764211 0000 0 01122222333 35999999999999999875
No 39
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=98.16 E-value=1.4e-05 Score=74.55 Aligned_cols=123 Identities=21% Similarity=0.309 Sum_probs=80.3
Q ss_pred hhCCCCCEEEEEcCCCCCC--CCCCCchHHHHHHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeee
Q 025916 80 YEDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMI 157 (246)
Q Consensus 80 ~ed~~k~I~LyINSpG~~~--~~~~~G~v~~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMi 157 (246)
.+.-.-||.-.+||||... .-|..|..........+|...+.|+.++++|.|+|.|++.++.+ +..+++||+.+.+
T Consensus 147 A~~f~iPvVtlvDTpGa~~g~~aE~~G~~~aia~~l~a~s~~~VP~IsVViGeggsGGAla~~~a--D~v~m~~~a~~sV 224 (316)
T TIGR00513 147 AERFKMPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLGVPVICTVIGEGGSGGALAIGVG--DKVNMLEYSTYSV 224 (316)
T ss_pred HHHcCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEecccccHHHhhhccC--CEEEEecCceEEe
Confidence 4455789999999999432 11222333333333444556679999999999999999877766 5789999999988
Q ss_pred ecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCCCCC
Q 025916 158 KQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKSP 231 (246)
Q Consensus 158 Hqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~~~~ 231 (246)
=.|.+... +..+. . ...++..+. .-+||+++++.|+||.|+..+...
T Consensus 225 isPEg~a~-------Il~kd----~------------~~a~~aae~----~~~ta~~l~~~G~iD~II~ep~~g 271 (316)
T TIGR00513 225 ISPEGCAA-------ILWKD----A------------SKAPKAAEA----MKITAPDLKELGLIDSIIPEPLGG 271 (316)
T ss_pred cCHHHHHH-------Hhccc----h------------hhHHHHHHH----ccCCHHHHHHCCCCeEeccCCCCc
Confidence 77764310 00000 0 001222222 345899999999999999877443
No 40
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=98.08 E-value=4.4e-05 Score=68.58 Aligned_cols=122 Identities=20% Similarity=0.228 Sum_probs=82.2
Q ss_pred CCCCCEEEEEcCCCCCC--CCCCCchHHHHHHHHHHh---cccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceee
Q 025916 82 DVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVM---GYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIM 156 (246)
Q Consensus 82 d~~k~I~LyINSpG~~~--~~~~~G~v~~g~aIyd~m---~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iM 156 (246)
+..-||...+|+||... .-|..|-...+-.+..++ ...+.|+.++++|.++|.|++-+..+. +..+++|++.+-
T Consensus 64 ~f~~PIv~lvDtpG~~~g~~aE~~G~~~a~A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~lamg~~a-d~v~Alp~A~i~ 142 (238)
T TIGR03134 64 DDKRPIVVLVDTPSQAYGRREELLGINQALAHLAKALALARLAGHPVIGLIYGKAISGAFLAHGLQA-DRIIALPGAMVH 142 (238)
T ss_pred cCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEeCCccHHHHHHHccCc-CeEEEcCCcEEE
Confidence 46789999999999553 333444444444333444 455599999999999998887775444 678999999886
Q ss_pred eecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcC--CCccCHHHHHHcCCceEEccCCCC
Q 025916 157 IKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRR--PKYFSPSEAVEYGIIDKVLYTEKS 230 (246)
Q Consensus 157 iHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~~~~~r--d~~~sa~EAleyGLID~Ii~~~~~ 230 (246)
.-.|.+. +..+.++.+++++..+. .+-.+++.+.+.|+||.|+++...
T Consensus 143 vm~~e~a--------------------------a~I~~~~~~~~~e~a~~~~~~a~~~~~~~~~G~vd~vi~~~~~ 192 (238)
T TIGR03134 143 VMDLESM--------------------------ARVTKRSVEELEALAKSSPVFAPGIENFVKLGGVHALLDVADA 192 (238)
T ss_pred ecCHHHH--------------------------HHHHccCHhHHHHHHHhhhhhccCHHHHHhCCCccEEeCCCCc
Confidence 5544431 11111333444444332 356788899999999999987754
No 41
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=98.06 E-value=3.7e-05 Score=71.84 Aligned_cols=119 Identities=22% Similarity=0.274 Sum_probs=79.2
Q ss_pred hhCCCCCEEEEEcCCCCCCC--CCCCchHHHHHHHHH---HhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCce
Q 025916 80 YEDVEKPIYLYINSTGTTKG--GEKLGYETEAFAIYD---VMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSST 154 (246)
Q Consensus 80 ~ed~~k~I~LyINSpG~~~~--~~~~G~v~~g~aIyd---~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~ 154 (246)
.+.-.-||.-.|+|||.... -|.-|. +-+|.. +|...+.|+.++++|.++|.|++.++.+ +..+++|+|.
T Consensus 150 A~~f~lPIItlvDTpGA~~G~~AE~~G~---~~aiar~l~~~a~~~VP~IsVViGeggsGGAlal~~a--D~V~m~e~a~ 224 (322)
T CHL00198 150 ANKFGLPILTFIDTPGAWAGVKAEKLGQ---GEAIAVNLREMFSFEVPIICTIIGEGGSGGALGIGIG--DSIMMLEYAV 224 (322)
T ss_pred HHHcCCCEEEEEeCCCcCcCHHHHHHhH---HHHHHHHHHHHHcCCCCEEEEEeCcccHHHHHhhhcC--CeEEEeCCeE
Confidence 44557899999999994320 011122 234444 3456679999999999999999888876 5789999999
Q ss_pred eeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCCCC
Q 025916 155 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKS 230 (246)
Q Consensus 155 iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~~~ 230 (246)
+.+=.|.+... =+ | ++.+...+..+ -.-+||++-+++|+||+|+..+..
T Consensus 225 ~sVisPEg~a~----Il-----------------~-----~d~~~a~~aA~-~~~ita~dL~~~giiD~ii~Ep~g 273 (322)
T CHL00198 225 YTVATPEACAA----IL-----------------W-----KDSKKSLDAAE-ALKITSEDLKVLGIIDEIIPEPIG 273 (322)
T ss_pred EEecCHHHHHH----HH-----------------h-----cchhhHHHHHH-HcCCCHHHHHhCCCCeEeccCCCC
Confidence 98877764311 00 0 11111111111 244889999999999999987644
No 42
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=97.82 E-value=0.00019 Score=65.09 Aligned_cols=99 Identities=17% Similarity=0.229 Sum_probs=69.8
Q ss_pred HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcc-cChHHHHHHHHHHHHHHHHHHHHH
Q 025916 111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-GQATDVEIARKEMKNVKAELVKLY 189 (246)
Q Consensus 111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~-G~a~di~i~a~el~~~~~~i~~iy 189 (246)
.+++.|..++.||.+.+-|.|.+.|.-|.+++ +.|++.++++|.+.....|.. +..--.. .+
T Consensus 104 ~~~~~l~~~~kPvIAaV~G~a~GgG~~Lalac--D~ria~~~a~f~~pe~~~Gl~p~~~g~~~---------------~l 166 (277)
T PRK08258 104 DLVKAMRACPQPIIAAVDGVCAGAGAILAMAS--DLRLGTPSAKTAFLFTRVGLAGADMGACA---------------LL 166 (277)
T ss_pred HHHHHHHhCCCCEEEEECCeeehHHHHHHHhC--CEEEecCCCEEeccccccCcCCCCchHHH---------------HH
Confidence 46677888899999999999999999999999 479999999987765554443 1111110 11
Q ss_pred HHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 190 AKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 190 a~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
.+..|. ....+++-....++++||+++||||+|....
T Consensus 167 ~~~vG~--~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 203 (277)
T PRK08258 167 PRIIGQ--GRASELLYTGRSMSAEEGERWGFFNRLVEPE 203 (277)
T ss_pred HHHhCH--HHHHHHHHcCCCCCHHHHHHcCCCcEecCHH
Confidence 111122 2233444456899999999999999998643
No 43
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=97.79 E-value=0.00017 Score=63.45 Aligned_cols=101 Identities=20% Similarity=0.320 Sum_probs=67.8
Q ss_pred HHHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccC-ceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHH
Q 025916 109 AFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPS-STIMIKQPIGRIEGQATDVEIARKEMKNVKAELVK 187 (246)
Q Consensus 109 g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pn-s~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~ 187 (246)
...++..|...+.||.+.+-|.|.+.|..|+++++ .|++.++ ++|.+-....|.. +.... . .
T Consensus 80 ~~~l~~~l~~~~kPvIAav~G~a~GgG~~lal~~D--~rva~~~~a~f~~pe~~~Gl~--~~~~~-----~--------~ 142 (229)
T PRK06213 80 GSTLARRLLSHPKPVIVACTGHAIAKGAFLLLSAD--YRIGVHGPFKIGLNEVAIGMT--MPHAA-----I--------E 142 (229)
T ss_pred HHHHHHHHHcCCCCEEEEEcCeeeHHHHHHHHhCC--eeeEecCCcEEECchhhhCCc--CChHH-----H--------H
Confidence 34566677788899999999999999999999994 7999998 8776533322221 11100 0 0
Q ss_pred HHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 188 LYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 188 iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
.+.++.| .....+++-.+..|+|+||+++||||+|....
T Consensus 143 ~l~~~~g--~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~~ 181 (229)
T PRK06213 143 LARDRLT--PSAFQRAVINAEMFDPEEAVAAGFLDEVVPPE 181 (229)
T ss_pred HHHHHcC--HHHHHHHHHcCcccCHHHHHHCCCceeccChH
Confidence 1111222 22334455567889999999999999998543
No 44
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=97.78 E-value=0.00017 Score=73.39 Aligned_cols=123 Identities=18% Similarity=0.226 Sum_probs=79.7
Q ss_pred hhCCCCCEEEEEcCCCCCC--CCCCCchHHHHHHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeee
Q 025916 80 YEDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMI 157 (246)
Q Consensus 80 ~ed~~k~I~LyINSpG~~~--~~~~~G~v~~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMi 157 (246)
.+.-.-||.-.|+|||... .-|..|...+......+|-....|+.++++|.|+|.|++.++.+ +..+|+|++.+.+
T Consensus 238 AekfgLPIVtLVDTpGA~pG~~AEe~Gq~~aIArnl~amasl~VP~ISVViGeggSGGAlA~g~a--D~VlMle~A~~sV 315 (762)
T PLN03229 238 ADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIVSIVIGEGGSGGALAIGCA--NKLLMLENAVFYV 315 (762)
T ss_pred HHHcCCCEEEEEECCCcCCCchhHHHhHHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhcC--CEEEEecCCeEEe
Confidence 4455789999999999432 12223333223333444556678999999999999999988887 4689999998776
Q ss_pred ecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCCCCC
Q 025916 158 KQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKSP 231 (246)
Q Consensus 158 Hqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~~~~ 231 (246)
-.|.+.. . |+-+.. ....+..+ -.-+||++-+++|+||.|+..+...
T Consensus 316 isPEgaA-------s---------------ILwkd~-~~A~eAAe----~lkiTa~dL~~lGiiD~IIpEp~gg 362 (762)
T PLN03229 316 ASPEACA-------A---------------ILWKSA-KAAPKAAE----KLRITAQELCRLQIADGIIPEPLGG 362 (762)
T ss_pred cCHHHHH-------H---------------HHhcCc-ccHHHHHH----HcCCCHHHHHhCCCCeeeccCCCCc
Confidence 6665321 0 110000 01111111 2348899999999999999876443
No 45
>PRK05869 enoyl-CoA hydratase; Validated
Probab=97.76 E-value=0.00017 Score=63.52 Aligned_cols=98 Identities=16% Similarity=0.257 Sum_probs=68.6
Q ss_pred HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcc-cChHHHHHHHHHHHHHHHHHHHHH
Q 025916 111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-GQATDVEIARKEMKNVKAELVKLY 189 (246)
Q Consensus 111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~-G~a~di~i~a~el~~~~~~i~~iy 189 (246)
.++..|...+.||.+.+-|.|.+.|..+.++++ .|++.++++|-+-....|.. +-.. . ..+
T Consensus 90 ~~~~~i~~~~kPvIAav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~Gl~p~~g~-~---------------~~l 151 (222)
T PRK05869 90 QAVDAVAAIPKPTVAAITGYALGAGLTLALAAD--WRVSGDNVKFGATEILAGLAPSGDG-M---------------ARL 151 (222)
T ss_pred HHHHHHHhCCCCEEEEEcCEeecHHHHHHHhCC--EEEecCCCEEcCchhccCCCCCccH-H---------------HHH
Confidence 466778888999999999999999999999994 79999998876544333321 1100 0 012
Q ss_pred HHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 190 AKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 190 a~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
.+..| .....+++-...+|+|+||+++||||+|.+..
T Consensus 152 ~~~ig--~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 188 (222)
T PRK05869 152 TRAAG--PSRAKELVFSGRFFDAEEALALGLIDEMVAPD 188 (222)
T ss_pred HHHhC--HHHHHHHHHcCCCcCHHHHHHCCCCCEeeCch
Confidence 22222 23334445456799999999999999998643
No 46
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=97.74 E-value=0.00023 Score=63.87 Aligned_cols=100 Identities=17% Similarity=0.204 Sum_probs=67.2
Q ss_pred HHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHH
Q 025916 110 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLY 189 (246)
Q Consensus 110 ~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iy 189 (246)
..++..|..++.||.+.+-|.|.+.|.-++++++ .|++.++++|-+-....|.. .+..- ... +
T Consensus 84 ~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD--~~ia~~~a~f~~pe~~~G~~---p~~g~----~~~--------l 146 (261)
T PRK03580 84 FAGLTEIFDLDKPVIAAVNGYAFGGGFELALAAD--FIVCADNASFALPEAKLGIV---PDSGG----VLR--------L 146 (261)
T ss_pred hHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCC--EEEecCCCEEeCcccccCcC---CCccH----HHH--------H
Confidence 3456677788899999999999999999999994 79999999885432222221 11100 000 1
Q ss_pred HHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 190 AKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 190 a~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
.+.. ......+++-....++++||+++||||+|.+..
T Consensus 147 ~~~v--g~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 183 (261)
T PRK03580 147 PKRL--PPAIANEMVMTGRRMDAEEALRWGIVNRVVPQA 183 (261)
T ss_pred HHHh--CHHHHHHHHHhCCccCHHHHHHcCCCcEecCHh
Confidence 1111 223334444456789999999999999998754
No 47
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=97.73 E-value=0.00024 Score=62.76 Aligned_cols=104 Identities=18% Similarity=0.127 Sum_probs=69.2
Q ss_pred HHHHHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHH
Q 025916 107 TEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELV 186 (246)
Q Consensus 107 ~~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~ 186 (246)
.....++..|..++.||.+.+-|.|.+.|+.+++++ +.|++.+++.|-+.....|..-..--..
T Consensus 77 ~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lala~--D~~ia~~~a~f~~pe~~~G~~p~~g~~~-------------- 140 (245)
T PF00378_consen 77 RRFQELLSRLANFPKPTIAAVNGHAVGGGFELALAC--DFRIAAEDAKFGFPEVRLGIFPGAGGTF-------------- 140 (245)
T ss_dssp HHHHHHHHHHHHSSSEEEEEESSEEETHHHHHHHHS--SEEEEETTTEEETGGGGGTSSSTSTHHH--------------
T ss_pred hhhccccccchhhhhheeeccccccccccccccccc--ceEEeecccceeeeecccCccccccccc--------------
Confidence 344667888888899999999999999999999999 5899999999544333222211111111
Q ss_pred HHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCCC
Q 025916 187 KLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEK 229 (246)
Q Consensus 187 ~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~~ 229 (246)
.+.+..|. ....+++-....++|+||+++||||+|++..+
T Consensus 141 -~l~r~~g~--~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~ 180 (245)
T PF00378_consen 141 -RLPRLIGP--SRARELLLTGEPISAEEALELGLVDEVVPDEE 180 (245)
T ss_dssp -HHHHHHHH--HHHHHHHHHTCEEEHHHHHHTTSSSEEESGGG
T ss_pred -ccceeeec--ccccccccccccchhHHHHhhcceeEEcCchh
Confidence 11111111 11122333357889999999999999998664
No 48
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=97.72 E-value=0.00017 Score=64.64 Aligned_cols=96 Identities=15% Similarity=0.155 Sum_probs=70.7
Q ss_pred HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHH
Q 025916 111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYA 190 (246)
Q Consensus 111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya 190 (246)
.+++.|...+.||.+.+-|.|.+.|.-|.++++ .|++.++++|-+-....|..|-..- +.
T Consensus 88 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD--~~ia~~~a~f~~pe~~~Gl~~~~~~------------------l~ 147 (257)
T PRK06495 88 ECFHAIRECAKPVIAAVNGPALGAGLGLVASCD--IIVASENAVFGLPEIDVGLAGGGKH------------------AM 147 (257)
T ss_pred HHHHHHHhCCCCEEEEECCeeehhHHHHHHhCC--EEEecCCCEeeChhhccCccccHHH------------------HH
Confidence 456677788899999999999999999999994 7999999988765444444322110 12
Q ss_pred HHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 191 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 191 ~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
+..| .....+++-....++++||+++||||+|.+..
T Consensus 148 ~~~g--~~~a~~lll~g~~~~a~eA~~~GLv~~vv~~~ 183 (257)
T PRK06495 148 RLFG--HSLTRRMMLTGYRVPAAELYRRGVIEACLPPE 183 (257)
T ss_pred HHhC--HHHHHHHHHcCCeeCHHHHHHcCCcceecCHH
Confidence 2223 34445555567899999999999999998643
No 49
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=97.71 E-value=0.00031 Score=63.03 Aligned_cols=99 Identities=15% Similarity=0.201 Sum_probs=67.6
Q ss_pred HHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcc-cChHHHHHHHHHHHHHHHHHHHH
Q 025916 110 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-GQATDVEIARKEMKNVKAELVKL 188 (246)
Q Consensus 110 ~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~-G~a~di~i~a~el~~~~~~i~~i 188 (246)
..+++.|..++.||.+.+-|.|.+.|.-|.+++ +.|++.++++|.+-....|.. +-.. .. .
T Consensus 82 ~~~~~~l~~~~kPvIaav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~Gl~p~~g~-~~---------------~ 143 (255)
T PRK08150 82 HRVFDKIQYGRVPVIAALHGAVVGGGLELASAA--HIRVADESTYFALPEGQRGIFVGGGG-SV---------------R 143 (255)
T ss_pred HHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhC--CEEEEeCCCEEeccccccCCCCCccH-HH---------------H
Confidence 345677888899999999999999999999999 479999999886533333321 1100 00 0
Q ss_pred HHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 189 YAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 189 ya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
+.+..| ...-.+++=....|+++||+++||||+|....
T Consensus 144 l~~~iG--~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 181 (255)
T PRK08150 144 VPRLIG--VARMTDMMLTGRVYDAQEGERLGLAQYLVPAG 181 (255)
T ss_pred HHHHhC--HHHHHHHHHcCCcCCHHHHHHcCCccEeeCch
Confidence 111222 22233344446789999999999999998754
No 50
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=97.70 E-value=0.00036 Score=62.45 Aligned_cols=99 Identities=11% Similarity=0.066 Sum_probs=69.7
Q ss_pred HHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcc-cChHHHHHHHHHHHHHHHHHHHH
Q 025916 110 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-GQATDVEIARKEMKNVKAELVKL 188 (246)
Q Consensus 110 ~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~-G~a~di~i~a~el~~~~~~i~~i 188 (246)
..++..|...+.||.+.+-|.|.+.|..|++++ +.|++.++++|-+.....|.. +-..- ..
T Consensus 88 ~~~~~~l~~~~kpvIAav~G~a~GgG~~lala~--D~~ia~~~a~f~~pe~~~Gl~p~~g~~----------------~~ 149 (260)
T PRK07511 88 HDWIRAIRAFPKPVIAAVEGAAAGAGFSLALAC--DLLVAARDAKFVMAYVKVGLTPDGGGS----------------WF 149 (260)
T ss_pred HHHHHHHHcCCCCEEEEECCeeehHHHHHHHhC--CEEEeeCCCEEeccccccCcCCCchHH----------------HH
Confidence 346677788899999999999999999999999 589999999887644433322 11000 00
Q ss_pred HHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 189 YAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 189 ya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
+.+.. ....-.+++-....|+++||+++||||+|.+..
T Consensus 150 l~~~v--g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 187 (260)
T PRK07511 150 LARAL--PRQLATELLLEGKPISAERLHALGVVNRLAEPG 187 (260)
T ss_pred HHHHh--CHHHHHHHHHhCCCCCHHHHHHcCCccEeeCch
Confidence 11111 233344555557899999999999999998654
No 51
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=97.65 E-value=0.00027 Score=63.76 Aligned_cols=98 Identities=16% Similarity=0.142 Sum_probs=68.8
Q ss_pred HHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHH
Q 025916 112 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAK 191 (246)
Q Consensus 112 Iyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~ 191 (246)
+++.|..++.||.+.+-|.|.+.|.-|++++ +.|++.++++|.+.....|..-...-.. .+.+
T Consensus 98 ~~~~i~~~~kPvIaav~G~a~GgG~~Lalac--D~~ia~~~a~f~~pe~~~Gl~p~~g~~~---------------~l~~ 160 (269)
T PRK06127 98 AQAALADYAKPTIACIRGYCIGGGMGIALAC--DIRIAAEDSRFGIPAARLGLGYGYDGVK---------------NLVD 160 (269)
T ss_pred HHHHHHhCCCCEEEEECCEEecHHHHHHHhC--CEEEeeCCCEeeCchhhhCCCCCccHHH---------------HHHH
Confidence 5567778899999999999999999999999 4799999999877555444321000000 0111
Q ss_pred HhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 192 HFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 192 ~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
..| .....+++-....++++||+++||||+|.+..
T Consensus 161 ~vG--~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 195 (269)
T PRK06127 161 LVG--PSAAKDLFYTARRFDAAEALRIGLVHRVTAAD 195 (269)
T ss_pred HhC--HHHHHHHHHcCCCCCHHHHHHcCCCCEeeCHH
Confidence 112 23344455457789999999999999999643
No 52
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=97.65 E-value=0.00026 Score=63.42 Aligned_cols=99 Identities=15% Similarity=0.117 Sum_probs=67.6
Q ss_pred HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHH
Q 025916 111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYA 190 (246)
Q Consensus 111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya 190 (246)
.+++.|...+.||.+.+-|.|.+.|.-|++++ +.|++.++++|.+-....|..-..--. ..+.
T Consensus 91 ~~~~~l~~~~kPvIaav~G~a~GgG~~lal~c--D~ria~~~a~f~~pe~~~Gl~p~~g~~---------------~~l~ 153 (260)
T PRK05980 91 AMTARLEAFPKPVIAAVNGLAFGGGCEITEAV--HLAIASERALFAKPEIRLGMPPTFGGT---------------QRLP 153 (260)
T ss_pred HHHHHHHhCCCCEEEEEcCEEEhhhhHHhHhC--CEEEecCCCEecCcccccCCCCCchHh---------------hHHH
Confidence 35667778899999999999999999999999 479999999886533332321000000 0112
Q ss_pred HHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 191 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 191 ~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
+..| ...-.+++-....++++||+++||||+|.+..
T Consensus 154 ~~vG--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 189 (260)
T PRK05980 154 RLAG--RKRALELLLTGDAFSAERALEIGLVNAVVPHE 189 (260)
T ss_pred hhcC--HHHHHHHHHcCCccCHHHHHHcCCCCcccCHH
Confidence 2222 22334444456789999999999999998654
No 53
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=97.64 E-value=0.0003 Score=62.81 Aligned_cols=101 Identities=16% Similarity=0.129 Sum_probs=68.6
Q ss_pred HHHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHH
Q 025916 109 AFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKL 188 (246)
Q Consensus 109 g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~i 188 (246)
...+++.|..++.||.+.+-|.|.+.|.-+++++ +.|++.++++|-+.....|.....--.. .
T Consensus 85 ~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lal~c--D~ria~~~a~f~~pe~~~G~~p~~g~~~---------------~ 147 (259)
T PRK06688 85 VNRFLRAIAALPKPVVAAVNGPAVGVGVSLALAC--DLVYASESAKFSLPFAKLGLCPDAGGSA---------------L 147 (259)
T ss_pred HHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhC--CEEEecCCCEecCchhhcCCCCCcchhh---------------H
Confidence 3457778888899999999999999999999999 4799999998877544433321100000 0
Q ss_pred HHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 189 YAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 189 ya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
+.+..| ...-.+++-....|+++||+++||||+|.+..
T Consensus 148 l~~~~G--~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~ 185 (259)
T PRK06688 148 LPRLIG--RARAAEMLLLGEPLSAEEALRIGLVNRVVPAA 185 (259)
T ss_pred HHHHhh--HHHHHHHHHhCCccCHHHHHHcCCcceecCHH
Confidence 111112 12223333345679999999999999998643
No 54
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=97.64 E-value=0.00023 Score=63.87 Aligned_cols=99 Identities=13% Similarity=0.091 Sum_probs=68.6
Q ss_pred HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHH
Q 025916 111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYA 190 (246)
Q Consensus 111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya 190 (246)
.++..|...+.||.+.+-|.|.+.|.-+.+++ +.|++.++++|-+..+..|..-..--.. .+.
T Consensus 94 ~~~~~l~~~~kpvIaav~G~a~GgG~~lalac--D~~ia~~~a~f~~~e~~lG~~p~~g~~~---------------~l~ 156 (266)
T PRK05981 94 PFLRRLRNLPCPIVTAVNGPAAGVGMSFALMG--DLILCARSAYFLQAFRRIGLVPDGGSTW---------------LLP 156 (266)
T ss_pred HHHHHHHhCCCCEEEEECCEeehHHHHHHHhC--CEEEecCCCEEechHhhcCCCCCccHHH---------------HHH
Confidence 46677888899999999999999999999999 4799999999876655444311000000 011
Q ss_pred HHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 191 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 191 ~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
+..| .....+++-....|+++||+++||||+|.+..
T Consensus 157 ~~vg--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 192 (266)
T PRK05981 157 RLVG--KARAMELSLLGEKLPAETALQWGLVNRVVDDA 192 (266)
T ss_pred HHhH--HHHHHHHHHhCCCcCHHHHHHcCCceEeeCHh
Confidence 1111 12223344446789999999999999998654
No 55
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=97.64 E-value=0.00023 Score=64.11 Aligned_cols=97 Identities=11% Similarity=0.131 Sum_probs=69.3
Q ss_pred HHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcc-cChHHHHHHHHHHHHHHHHHHHHHH
Q 025916 112 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-GQATDVEIARKEMKNVKAELVKLYA 190 (246)
Q Consensus 112 Iyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~-G~a~di~i~a~el~~~~~~i~~iya 190 (246)
.++.|..++.||.+.+-|.|.+.|.-|++++ +.|++.++++|-+..+..|.. +-..-. .+.
T Consensus 100 ~~~~l~~~~kPvIaav~G~a~GgG~~lala~--D~~ia~~~a~f~~pe~~~Gl~p~~g~~~----------------~l~ 161 (272)
T PRK06210 100 RYHFLTALRKPVIAAINGACAGIGLTHALMC--DVRFAADGAKFTTAFARRGLIAEHGISW----------------ILP 161 (272)
T ss_pred HHHHHHhCCCCEEEEECCeeehHHHHHHHhC--CEEEEeCCCEEechHHhcCCCCCCchhh----------------hhH
Confidence 4567778899999999999999999999999 479999999998765554431 111000 011
Q ss_pred HHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 191 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 191 ~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
+.. ......+++-.+..++|+||+++||||+|....
T Consensus 162 ~~i--g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 197 (272)
T PRK06210 162 RLV--GHANALDLLLSARTFYAEEALRLGLVNRVVPPD 197 (272)
T ss_pred hhh--CHHHHHHHHHcCCccCHHHHHHcCCcceecCHH
Confidence 111 233445555557888999999999999998653
No 56
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=97.57 E-value=0.00044 Score=61.89 Aligned_cols=99 Identities=13% Similarity=0.117 Sum_probs=69.6
Q ss_pred HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHH
Q 025916 111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYA 190 (246)
Q Consensus 111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya 190 (246)
.+++.|..++.||.+.+-|.|.+.|.-|.+++ +.|++.++++|.+.....|..-..-- ...+.
T Consensus 83 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~Gl~p~~g~---------------~~~l~ 145 (255)
T PRK09674 83 QLWQRLQAFNKPLIAAVNGYALGAGCELALLC--DIVIAGENARFGLPEITLGIMPGAGG---------------TQRLI 145 (255)
T ss_pred HHHHHHHhCCCCEEEEECCEeehHHHHHHHhC--CEEEecCCCEEeCchhhcCCCCCccH---------------HHHHH
Confidence 46777888899999999999999999999999 47999999988765444333110000 01122
Q ss_pred HHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 191 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 191 ~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
+..| ...-.+++-....|+++||+++||||+|.+..
T Consensus 146 ~~ig--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 181 (255)
T PRK09674 146 RSVG--KSLASQMVLTGESITAQQAQQAGLVSEVFPPE 181 (255)
T ss_pred HHhC--HHHHHHHHHcCCccCHHHHHHcCCCcEecChH
Confidence 2223 23334455556789999999999999998654
No 57
>PRK08139 enoyl-CoA hydratase; Validated
Probab=97.57 E-value=0.00051 Score=61.98 Aligned_cols=98 Identities=11% Similarity=0.155 Sum_probs=68.7
Q ss_pred HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHH
Q 025916 111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYA 190 (246)
Q Consensus 111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya 190 (246)
.+++.|..++.||.+.+-|.|.+.|.-|++++ +-|++.++++|-+-....|......-. .+.
T Consensus 95 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~~~~----------------~l~ 156 (266)
T PRK08139 95 RVMQAIVALPQPVIARVHGIATAAGCQLVASC--DLAVAADTARFAVPGVNIGLFCSTPMV----------------ALS 156 (266)
T ss_pred HHHHHHHhCCCCEEEEECceeeHHHHHHHHhC--CEEEEeCCCEEeCcccCcCCCCCccHH----------------HHH
Confidence 35667788899999999999999999999999 479999999886544444432111100 011
Q ss_pred HHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 191 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 191 ~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
+..| ...-.+++-....++|+||+++||||+|.+..
T Consensus 157 r~vG--~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~ 192 (266)
T PRK08139 157 RNVP--RKQAMEMLLTGEFIDAATAREWGLVNRVVPAD 192 (266)
T ss_pred HHhC--HHHHHHHHHcCCccCHHHHHHcCCccEeeChh
Confidence 2222 22334445457788999999999999999753
No 58
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=97.56 E-value=0.00057 Score=61.26 Aligned_cols=97 Identities=12% Similarity=0.080 Sum_probs=67.3
Q ss_pred HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcc-cC-hHHHHHHHHHHHHHHHHHHHH
Q 025916 111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-GQ-ATDVEIARKEMKNVKAELVKL 188 (246)
Q Consensus 111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~-G~-a~di~i~a~el~~~~~~i~~i 188 (246)
.++..|..++.||.+.+-|.|.+.|.-|++++ +-|++.++++|-+-....|.. +- .+. .
T Consensus 86 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~Gl~p~~g~~~-----------------~ 146 (258)
T PRK09076 86 EAFEALSAFRGVSIAAINGYAMGGGLECALAC--DIRIAEEQAQMALPEASVGLLPCAGGTQ-----------------N 146 (258)
T ss_pred HHHHHHHhCCCCEEEEECCEEecHHHHHHHhC--CEEEecCCCEeeCcccccCCCCCccHHH-----------------H
Confidence 35667788899999999999999999999999 479999999886643333321 11 110 1
Q ss_pred HHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 189 YAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 189 ya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
+.+..|. ....+++=....|+++||+++||||+|....
T Consensus 147 l~~~iG~--~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 184 (258)
T PRK09076 147 LPWLVGE--GWAKRMILCGERVDAATALRIGLVEEVVEKG 184 (258)
T ss_pred HHHHhCH--HHHHHHHHcCCcCCHHHHHHCCCCceecCch
Confidence 1122222 2223344446789999999999999998754
No 59
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=97.54 E-value=0.00041 Score=62.39 Aligned_cols=99 Identities=16% Similarity=0.232 Sum_probs=67.4
Q ss_pred HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHH
Q 025916 111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYA 190 (246)
Q Consensus 111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya 190 (246)
.++..|...+.||.+.+-|.|.+.|.-|++++ +.|++.++++|.+-....|..-...-.. .+.
T Consensus 87 ~l~~~i~~~~kPvIaav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~Gl~~~~g~~~---------------~l~ 149 (261)
T PRK11423 87 QILRMIQKFPKPVIAMVEGSVWGGAFELIMSC--DLIIAASTSTFAMTPANLGVPYNLSGIL---------------NFT 149 (261)
T ss_pred HHHHHHHhCCCCEEEEEecEEechHHHHHHhC--CEEEecCCCEecCchhhcCCCCCccHHH---------------HHH
Confidence 45677788899999999999999999999998 4799999988765443333210000010 112
Q ss_pred HHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 191 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 191 ~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
+..| ...-.+++-....++++||+++||||+|.+..
T Consensus 150 ~~vg--~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~ 185 (261)
T PRK11423 150 NDAG--FHIVKEMFFTASPITAQRALAVGILNHVVEVE 185 (261)
T ss_pred HHhH--HHHHHHHHHcCCCcCHHHHHHcCCcCcccCHH
Confidence 2222 23334444456789999999999999998643
No 60
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=97.54 E-value=0.00052 Score=61.27 Aligned_cols=99 Identities=16% Similarity=0.178 Sum_probs=67.9
Q ss_pred HHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcc-cChHHHHHHHHHHHHHHHHHHHH
Q 025916 110 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-GQATDVEIARKEMKNVKAELVKL 188 (246)
Q Consensus 110 ~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~-G~a~di~i~a~el~~~~~~i~~i 188 (246)
..++..|...+.||...+-|.|.+.|.-+++++ +-|++.++++|-+-....|.. |-.. . ..
T Consensus 84 ~~~~~~l~~~~kpvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~g~-~---------------~~ 145 (257)
T PRK07658 84 QVTFERVEKFSKPVIAAIHGAALGGGLELAMSC--HIRFATESAKLGLPELNLGLIPGFAG-T---------------QR 145 (257)
T ss_pred HHHHHHHHhCCCCEEEEEcCeeeeHHHHHHHhC--CEEEecCCCcccCcccccCCCCCCcH-H---------------HH
Confidence 346677888899999999999999999999999 479999998876533333321 1110 0 00
Q ss_pred HHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 189 YAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 189 ya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
+.+..| ...-.+++-....++++||+++||||+|.+..
T Consensus 146 l~~~vG--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 183 (257)
T PRK07658 146 LPRYVG--KAKALEMMLTSEPITGAEALKWGLVNGVFPEE 183 (257)
T ss_pred HHHHhC--HHHHHHHHHcCCCcCHHHHHHcCCcCeecChh
Confidence 111222 22233445457889999999999999998643
No 61
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=97.54 E-value=0.00019 Score=64.09 Aligned_cols=99 Identities=17% Similarity=0.143 Sum_probs=67.4
Q ss_pred HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHH
Q 025916 111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYA 190 (246)
Q Consensus 111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya 190 (246)
.++..|..++.||.+.+-|.|.+.|..|+++++ -|++.++++|.+-....|.. .+..- . ..+.
T Consensus 89 ~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D--~ria~~~a~f~~pe~~~Gl~---p~~g~----~--------~~l~ 151 (255)
T PRK07260 89 EISFAIKQLPKPVIMCVDGAVAGAAANMAVAAD--FCIASTKTKFIQAFVGVGLA---PDAGG----L--------FLLT 151 (255)
T ss_pred HHHHHHHcCCCCEEEEecCeeehhhHHHHHhCC--EEEEeCCCEEechHhhcCCC---CCCch----h--------hhhH
Confidence 456677888999999999999999999999995 79999999886522222211 01000 0 0111
Q ss_pred HHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 191 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 191 ~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
+..| .....+++-....++|+||+++||||+|.+..
T Consensus 152 ~~vg--~~~a~~l~l~g~~~sa~eA~~~Glv~~vv~~~ 187 (255)
T PRK07260 152 RAIG--LNRATHLAMTGEALTAEKALEYGFVYRVAESE 187 (255)
T ss_pred HhhC--HHHHHHHHHhCCccCHHHHHHcCCcceecCHh
Confidence 2222 23344555557899999999999999998654
No 62
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=97.53 E-value=0.00073 Score=60.64 Aligned_cols=99 Identities=15% Similarity=0.170 Sum_probs=69.8
Q ss_pred HHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHH
Q 025916 110 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLY 189 (246)
Q Consensus 110 ~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iy 189 (246)
..+++.|...+.||.+.+-|.|.+.|.-|.++++ .|++.++++|.+-....|. +.... ...+
T Consensus 90 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD--~~ia~~~a~f~~pe~~~G~---p~~~~-------------~~~l 151 (256)
T PRK06143 90 RDLCDAVRHFPVPVIARIPGWCLGGGLELAAACD--LRIAAHDAQFGMPEVRVGI---PSVIH-------------AALL 151 (256)
T ss_pred HHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCC--EEEecCCCEEeCCccccCC---CCccH-------------HHHH
Confidence 3466777888999999999999999999999994 7999999988653333332 11100 0112
Q ss_pred HHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 190 AKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 190 a~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
.+..| .....+++-....++|+||+++||||+|.+..
T Consensus 152 ~~~iG--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 188 (256)
T PRK06143 152 PRLIG--WARTRWLLLTGETIDAAQALAWGLVDRVVPLA 188 (256)
T ss_pred HHhcC--HHHHHHHHHcCCcCCHHHHHHCCCcCeecCHH
Confidence 23333 23444555567899999999999999998643
No 63
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=97.53 E-value=0.0004 Score=62.04 Aligned_cols=96 Identities=16% Similarity=0.157 Sum_probs=68.3
Q ss_pred HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHH
Q 025916 111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYA 190 (246)
Q Consensus 111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya 190 (246)
.+++.|..++.||.+.+-|.|.+.|.-|+++++ .|++.++++|.+-....|..|-.. .+.
T Consensus 85 ~~~~~i~~~~kPvIAav~G~a~GgG~~Lal~cD--~ria~~~a~f~~pe~~~G~~g~~~------------------~l~ 144 (249)
T PRK07938 85 AAFRAVYECAVPVIAAVHGFCLGGGIGLVGNAD--VIVASDDATFGLPEVDRGALGAAT------------------HLQ 144 (249)
T ss_pred HHHHHHHhCCCCEEEEEcCEEeehHHHHHHhCC--EEEEeCCCEeeCccceecCchhHH------------------HHH
Confidence 355667788899999999999999999999994 799999998865333333322110 112
Q ss_pred HHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 191 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 191 ~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
+..| ...-.+++-....++++||+++||||+|.+..
T Consensus 145 ~~vg--~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 180 (249)
T PRK07938 145 RLVP--QHLMRALFFTAATITAAELHHFGSVEEVVPRD 180 (249)
T ss_pred HhcC--HHHHHHHHHhCCcCCHHHHHHCCCccEEeCHH
Confidence 2222 33334455557899999999999999998643
No 64
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=97.50 E-value=0.00046 Score=61.80 Aligned_cols=96 Identities=16% Similarity=0.140 Sum_probs=67.1
Q ss_pred HHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHH
Q 025916 112 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAK 191 (246)
Q Consensus 112 Iyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~ 191 (246)
++..|..++.||.+.+-|.|.+.|.-|.++++ .|++.++++|-+.....|... +..- ...+.+
T Consensus 94 ~~~~~~~~~kpvIaav~G~a~GgG~~lalacD--~~ia~~~a~f~~pe~~~Gl~p---~~g~------------~~~l~~ 156 (262)
T PRK07509 94 VSLGWRRLPVPVIAALEGVCFGGGLQIALGAD--IRIAAPDTKLSIMEAKWGLVP---DMAG------------TVSLRG 156 (262)
T ss_pred HHHHHHhCCCCEEEEECCeeecchHHHHHhCC--EEEecCCCEeecchhccCCCC---CchH------------HHHHHH
Confidence 34556778899999999999999999999994 799999998877554433311 1000 001122
Q ss_pred HhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEcc
Q 025916 192 HFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLY 226 (246)
Q Consensus 192 ~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~ 226 (246)
.. ......+++-....|+++||+++||||+|.+
T Consensus 157 ~~--g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~ 189 (262)
T PRK07509 157 LV--RKDVARELTYTARVFSAEEALELGLVTHVSD 189 (262)
T ss_pred Hh--CHHHHHHHHHcCCCcCHHHHHHcCChhhhhc
Confidence 22 2333445555578899999999999999974
No 65
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=97.50 E-value=0.00055 Score=61.36 Aligned_cols=97 Identities=21% Similarity=0.219 Sum_probs=67.0
Q ss_pred HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcc-c-ChHHHHHHHHHHHHHHHHHHHH
Q 025916 111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-G-QATDVEIARKEMKNVKAELVKL 188 (246)
Q Consensus 111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~-G-~a~di~i~a~el~~~~~~i~~i 188 (246)
.+++.|...+.||.+.+-|.|.+.|.-|.+++ +.|++.++++|.+-....|.. + -.+. .
T Consensus 88 ~~~~~l~~~~kPvIaav~G~a~GgG~~lal~c--D~~ia~~~a~f~~pe~~~G~~p~~g~~~-----------------~ 148 (260)
T PRK07657 88 TTMEMVEQLPQPVIAAINGIALGGGLELALAC--DFRIAAESASLGLTETTLAIIPGAGGTQ-----------------R 148 (260)
T ss_pred HHHHHHHhCCCCEEEEEcCEeechHHHHHHhC--CEEEeeCCCEEcCchhccCcCCCccHHH-----------------H
Confidence 45677778889999999999999999999999 479999999886644443321 1 1111 0
Q ss_pred HHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 189 YAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 189 ya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
+.+..| ...-.+++-....|+++||+++||||+|....
T Consensus 149 l~~~vG--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 186 (260)
T PRK07657 149 LPRLIG--VGRAKELIYTGRRISAQEAKEIGLVEFVVPAH 186 (260)
T ss_pred HHHHhC--HHHHHHHHHhCCCCCHHHHHHcCCCCeecCHH
Confidence 111112 12233344446679999999999999998654
No 66
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=97.50 E-value=0.00066 Score=61.15 Aligned_cols=100 Identities=11% Similarity=0.028 Sum_probs=68.9
Q ss_pred HHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHH
Q 025916 110 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLY 189 (246)
Q Consensus 110 ~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iy 189 (246)
..++..|..++.||.+.+-|.|.+.|.-|++++ +.|++.++++|-+-....|.. .+..- ...+
T Consensus 84 ~~~~~~i~~~~kPvIAaV~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~Gl~---p~~g~------------~~~l 146 (258)
T PRK06190 84 PNPSPAWPAMRKPVIGAINGAAVTGGLELALAC--DILIASERARFADTHARVGIL---PGWGL------------SVRL 146 (258)
T ss_pred HHHHHHHHhCCCCEEEEECCEeecHHHHHHHhC--CEEEEeCCCEEECcccccCcC---CCccH------------HHHH
Confidence 356777888899999999999999999999999 479999999886533322221 11100 0111
Q ss_pred HHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 190 AKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 190 a~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
.+..| ...-.+++-....|+|+||+++||||+|.+..
T Consensus 147 ~r~vG--~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~ 183 (258)
T PRK06190 147 PQKVG--IGRARRMSLTGDFLDAADALRAGLVTEVVPHD 183 (258)
T ss_pred HHHhC--HHHHHHHHHhCCccCHHHHHHcCCCeEecCHh
Confidence 22223 33344455557789999999999999998643
No 67
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=97.49 E-value=0.00057 Score=61.36 Aligned_cols=99 Identities=14% Similarity=0.100 Sum_probs=66.9
Q ss_pred HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHH
Q 025916 111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYA 190 (246)
Q Consensus 111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya 190 (246)
.+++.|..++.||.+.+-|.|.+.|.-|++++ +-|++.++++|.+.....|..-..--.. .+.
T Consensus 94 ~~~~~l~~~~kpvIaav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~G~~p~~g~~~---------------~l~ 156 (266)
T PRK09245 94 RIPLALYNLEVPVIAAVNGPAIGAGCDLACMC--DIRIASETARFAESFVKLGLIPGDGGAW---------------LLP 156 (266)
T ss_pred HHHHHHHcCCCCEEEEECCEeecHHHHHHHhC--CEEEecCCCEEcccccccCcCCCcchhh---------------hHH
Confidence 35567778889999999999999999999999 4799999998876444433211000000 111
Q ss_pred HHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 191 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 191 ~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
+..| ...-.+++-....|+++||+++||||+|.+..
T Consensus 157 ~~vG--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 192 (266)
T PRK09245 157 RIIG--MARAAEMAFTGDAIDAATALEWGLVSRVVPAD 192 (266)
T ss_pred HHhh--HHHHHHHHHcCCCcCHHHHHHcCCcceecCHH
Confidence 1122 12223344446789999999999999998653
No 68
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=97.49 E-value=0.00063 Score=60.79 Aligned_cols=94 Identities=14% Similarity=0.091 Sum_probs=64.9
Q ss_pred HhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcc-cChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025916 115 VMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-GQATDVEIARKEMKNVKAELVKLYAKHF 193 (246)
Q Consensus 115 ~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~-G~a~di~i~a~el~~~~~~i~~iya~~T 193 (246)
.|..++.||.+.+-|.|.+.|..+++++ +.|++.++++|-+.....|.. +-..-. .+.+..
T Consensus 87 ~l~~~~kPvIAav~G~a~GgG~~lal~c--D~ria~~~a~f~~pe~~~Gl~p~~g~~~----------------~l~~~v 148 (255)
T PRK06563 87 VGRRLSKPLVVAVQGYCLTLGIELMLAA--DIVVAADNTRFAQLEVQRGILPFGGATL----------------RFPQAA 148 (255)
T ss_pred HHhcCCCCEEEEEcCeeecHHHHHHHhC--CEEEecCCCEEeChhhhcCCCCCccHHH----------------HHHHHh
Confidence 4677889999999999999999999999 479999999887654443321 111100 011122
Q ss_pred CCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 194 GKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 194 g~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
|. ..-.+++-....|+++||+++||||+|....
T Consensus 149 G~--~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 181 (255)
T PRK06563 149 GW--GNAMRYLLTGDEFDAQEALRLGLVQEVVPPG 181 (255)
T ss_pred hH--HHHHHHHHcCCCcCHHHHHHcCCCcEeeCHH
Confidence 21 2223444456789999999999999998654
No 69
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=97.48 E-value=0.00093 Score=59.64 Aligned_cols=99 Identities=12% Similarity=0.067 Sum_probs=69.6
Q ss_pred HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHH
Q 025916 111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYA 190 (246)
Q Consensus 111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya 190 (246)
.++..+...+.||.+.+-|.|.+.|..|.+++ +.|++.++++|-+.....|.. .+..- ...+.
T Consensus 85 ~~~~~l~~~~kPvIaav~G~a~GgG~~lal~c--D~~ia~~~a~f~~pe~~~Gl~---p~~g~------------~~~l~ 147 (249)
T PRK07110 85 NLYSLALNCPIPVIAAMQGHAIGGGLVLGLYA--DIVVLSRESVYTANFMKYGFT---PGMGA------------TAILP 147 (249)
T ss_pred HHHHHHHcCCCCEEEEecCceechHHHHHHhC--CEEEEeCCCEecCchhccCCC---CCchH------------HHHHH
Confidence 56777888899999999999999999999999 479999999875533332221 11100 00112
Q ss_pred HHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 191 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 191 ~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
+.. ......+++-...-|+++||+++||||+|.+..
T Consensus 148 ~~~--g~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~ 183 (249)
T PRK07110 148 EKL--GLALGQEMLLTARYYRGAELKKRGVPFPVLPRA 183 (249)
T ss_pred HHh--CHHHHHHHHHcCCccCHHHHHHcCCCeEEeChH
Confidence 222 233445566567899999999999999998644
No 70
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=97.48 E-value=0.0005 Score=61.40 Aligned_cols=98 Identities=19% Similarity=0.090 Sum_probs=68.1
Q ss_pred HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcc-cChHHHHHHHHHHHHHHHHHHHHH
Q 025916 111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-GQATDVEIARKEMKNVKAELVKLY 189 (246)
Q Consensus 111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~-G~a~di~i~a~el~~~~~~i~~iy 189 (246)
.++..|...+.||...+-|.|.+.|..+.+++ +.|++.++++|.+.....|.. +-..- ..+
T Consensus 88 ~~~~~l~~~~kPvIAav~G~a~GgG~~la~ac--D~ria~~~a~f~~pe~~~Gl~p~~g~~----------------~~l 149 (251)
T PRK06023 88 DFLIALAEAEKPIVSGVDGLAIGIGTTIHLHC--DLTFASPRSLFRTPFVDLALVPEAGSS----------------LLA 149 (251)
T ss_pred HHHHHHHhCCCCEEEEeCCceecHHHHHHHhC--CEEEEeCCCEecCcccccCCCCCchHH----------------HHH
Confidence 46677888899999999999999999999999 489999999987644433331 11100 011
Q ss_pred HHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 190 AKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 190 a~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
.+..| .....+++-..+.++++||+++||||+|.+..
T Consensus 150 ~~~~g--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 186 (251)
T PRK06023 150 PRLMG--HQRAFALLALGEGFSAEAAQEAGLIWKIVDEE 186 (251)
T ss_pred HHHHh--HHHHHHHHHhCCCCCHHHHHHcCCcceeeCHH
Confidence 11122 22333344446789999999999999998643
No 71
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=97.47 E-value=0.00057 Score=61.87 Aligned_cols=98 Identities=17% Similarity=0.180 Sum_probs=67.1
Q ss_pred HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHH
Q 025916 111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYA 190 (246)
Q Consensus 111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya 190 (246)
.+++.|..++.||.+.+-|.|.+.|..|.++++ -|++.++++|.+-....|.. .+... . ..+.
T Consensus 102 ~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD--~~ia~~~a~f~~pe~~~Gl~---p~~g~----~--------~~l~ 164 (275)
T PLN02664 102 DAITAIEQCRKPVIAAIHGACIGGGVDIVTACD--IRYCSEDAFFSVKEVDLAIT---ADLGT----L--------QRLP 164 (275)
T ss_pred HHHHHHHhCCCCEEEEECCccccchHHHHHhCC--EEEecCCCEeccHHHhhCCC---CCccH----H--------HHHH
Confidence 356678888999999999999999999999994 79999999986643333321 11110 0 0011
Q ss_pred HHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccC
Q 025916 191 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYT 227 (246)
Q Consensus 191 ~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~ 227 (246)
+..| ...-.+++=....|+++||+++||||+|.+.
T Consensus 165 ~~vG--~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~ 199 (275)
T PLN02664 165 SIVG--YGNAMELALTGRRFSGSEAKELGLVSRVFGS 199 (275)
T ss_pred HHhC--HHHHHHHHHhCCCCCHHHHHHcCCCceeeCC
Confidence 1122 2223344444678999999999999999864
No 72
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=97.47 E-value=0.00067 Score=62.10 Aligned_cols=99 Identities=15% Similarity=0.068 Sum_probs=68.3
Q ss_pred HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHH
Q 025916 111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYA 190 (246)
Q Consensus 111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya 190 (246)
.++..|..++.||.+.+-|.|.+.|.-|++++ +-|++.++++|-+.....|..- +.-- . ..+.
T Consensus 104 ~~~~~l~~~pkPvIAav~G~a~GgG~~Lalac--D~ria~~~a~f~~pe~~~Gl~p---~~g~----~--------~~l~ 166 (296)
T PRK08260 104 RVTLRIFDSLKPVIAAVNGPAVGVGATMTLAM--DIRLASTAARFGFVFGRRGIVP---EAAS----S--------WFLP 166 (296)
T ss_pred HHHHHHHhCCCCEEEEECCeeehHhHHHHHhC--CEEEeeCCCEEecchhhcCcCC---Ccch----h--------hhHH
Confidence 35667888899999999999999999999999 4799999999876554433211 1000 0 0011
Q ss_pred HHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 191 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 191 ~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
+..| ...-.+++-....++++||+++||||+|.+..
T Consensus 167 r~vG--~~~A~~llltg~~~~a~eA~~~GLv~~vv~~~ 202 (296)
T PRK08260 167 RLVG--LQTALEWVYSGRVFDAQEALDGGLVRSVHPPD 202 (296)
T ss_pred HhhC--HHHHHHHHHcCCccCHHHHHHCCCceeecCHH
Confidence 1112 22334455556789999999999999998643
No 73
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=97.45 E-value=0.00072 Score=61.37 Aligned_cols=97 Identities=16% Similarity=0.178 Sum_probs=67.4
Q ss_pred HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcc-c-ChHHHHHHHHHHHHHHHHHHHH
Q 025916 111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-G-QATDVEIARKEMKNVKAELVKL 188 (246)
Q Consensus 111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~-G-~a~di~i~a~el~~~~~~i~~i 188 (246)
.++..|...+.||.+.+-|.|.+.|.-|+++++ .|++.++++|.+-....|.. + -.. ..
T Consensus 95 ~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD--~~ia~~~a~f~~pe~~~Gl~p~~g~~-----------------~~ 155 (275)
T PRK09120 95 GWWRRLRWYQKPTIAMVNGWCFGGGFSPLVACD--LAIAADEAQFGLSEINWGIPPGGGVS-----------------KA 155 (275)
T ss_pred HHHHHHHhCCCCEEEEEcCEEechhHHHHHhCC--EEEEeCCcEecCCccccCCCCCcchH-----------------HH
Confidence 356677788899999999999999999999994 79999999887633222221 1 111 11
Q ss_pred HHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 189 YAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 189 ya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
+.+..| ...-.+++-....|+++||+++||||+|.+..
T Consensus 156 l~~~iG--~~~a~~llltg~~~~A~eA~~~Glv~~vv~~~ 193 (275)
T PRK09120 156 MADTVG--HRDALYYIMTGETFTGRKAAEMGLVNESVPLA 193 (275)
T ss_pred HHHHcC--HHHHHHHHhcCCccCHHHHHHcCCcceecCHH
Confidence 222222 22334444446789999999999999998754
No 74
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=97.45 E-value=0.0009 Score=60.37 Aligned_cols=98 Identities=15% Similarity=0.210 Sum_probs=66.5
Q ss_pred HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHH
Q 025916 111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYA 190 (246)
Q Consensus 111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya 190 (246)
.+++.|..++.||.+.+-|.|.+.|.-|+++++ -|++.++++|-+.....|.. .+... ...+.
T Consensus 100 ~~~~~i~~~~kpvIAav~G~a~GgG~~lalacD--~~ia~~~a~f~~pe~~~Gl~---p~~g~------------~~~l~ 162 (272)
T PRK06142 100 AAINAVADCRKPVIAAVQGWCIGGGVDLISACD--MRYASADAKFSVREVDLGMV---ADVGS------------LQRLP 162 (272)
T ss_pred HHHHHHHhCCCCEEEEecCccccchHHHHHhCC--EEEecCCCeecchhhhhCCC---CCchH------------HHHHH
Confidence 456677888999999999999999999999994 79999999875543333321 11100 00111
Q ss_pred HHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccC
Q 025916 191 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYT 227 (246)
Q Consensus 191 ~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~ 227 (246)
+..|. ....+++-...-++++||+++||||+|.++
T Consensus 163 ~~~G~--~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~ 197 (272)
T PRK06142 163 RIIGD--GHLRELALTGRDIDAAEAEKIGLVNRVYDD 197 (272)
T ss_pred HHhCH--HHHHHHHHhCCCcCHHHHHHcCCccEecCC
Confidence 11221 223344444677999999999999999875
No 75
>PLN02921 naphthoate synthase
Probab=97.45 E-value=0.001 Score=62.29 Aligned_cols=96 Identities=16% Similarity=0.232 Sum_probs=68.9
Q ss_pred HHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcc--cChHHHHHHHHHHHHHHHHHHHHH
Q 025916 112 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE--GQATDVEIARKEMKNVKAELVKLY 189 (246)
Q Consensus 112 Iyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~--G~a~di~i~a~el~~~~~~i~~iy 189 (246)
++..|..++.||.+.+-|.|.+.|..|.+++ +-|++.++++|.+..+..|.. |-..- .+
T Consensus 153 l~~~l~~~~kPvIAaVnG~a~GGG~~Lalac--D~riA~~~A~f~~pe~~~Gl~p~~gg~~-----------------~L 213 (327)
T PLN02921 153 LQIQIRRLPKPVIAMVAGYAVGGGHILHMVC--DLTIAADNAVFGQTGPKVGSFDAGYGSS-----------------IM 213 (327)
T ss_pred HHHHHHhCCCCEEEEECCEEecHHHHHHHhC--CEEEEeCCCEEeCcccccCCCCCccHHH-----------------HH
Confidence 4567778889999999999999999999999 479999999987766654432 11110 01
Q ss_pred HHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 190 AKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 190 a~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
.+..| ...-.+++-....|+|+||+++||||+|....
T Consensus 214 ~rliG--~~~A~ellltG~~~~A~eA~~~GLV~~vv~~~ 250 (327)
T PLN02921 214 ARLVG--QKKAREMWFLARFYTASEALKMGLVNTVVPLD 250 (327)
T ss_pred HHHhC--HHHHHHHHHcCCcCCHHHHHHCCCceEEeCHH
Confidence 11112 22334455557889999999999999998653
No 76
>PLN02888 enoyl-CoA hydratase
Probab=97.44 E-value=0.00075 Score=60.92 Aligned_cols=99 Identities=12% Similarity=0.055 Sum_probs=66.6
Q ss_pred HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHH
Q 025916 111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYA 190 (246)
Q Consensus 111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya 190 (246)
.++..|..++.||.+.+-|.|.+.|..|++++ +.|++.++++|.+-....|.. .+... ...+.
T Consensus 90 ~~~~~i~~~~kPvIaav~G~a~GgG~~lal~c--D~ria~~~a~f~~pe~~~Gl~---p~~g~------------~~~l~ 152 (265)
T PLN02888 90 DPVAQMERCRKPIIGAINGFAITAGFEIALAC--DILVASRGAKFIDTHAKFGIF---PSWGL------------SQKLS 152 (265)
T ss_pred HHHHHHHhCCCCEEEEECCeeechHHHHHHhC--CEEEecCCCEecCccccccCC---CCccH------------hhHHH
Confidence 35566778889999999999999999999999 479999999886533332221 11000 00112
Q ss_pred HHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 191 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 191 ~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
+..| ...-.+++-....|+++||+++||||+|.+..
T Consensus 153 ~~vG--~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 188 (265)
T PLN02888 153 RIIG--ANRAREVSLTAMPLTAETAERWGLVNHVVEES 188 (265)
T ss_pred HHhC--HHHHHHHHHhCCccCHHHHHHcCCccEeeChH
Confidence 2222 22233344446789999999999999998654
No 77
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=97.43 E-value=0.00077 Score=60.30 Aligned_cols=99 Identities=11% Similarity=0.113 Sum_probs=67.5
Q ss_pred HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHH
Q 025916 111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYA 190 (246)
Q Consensus 111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya 190 (246)
.++..|...+.||.+.+-|.|.+.|.-+.++++ .|++.++++|-+-....|.. .+..- ...+.
T Consensus 85 ~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD--~~ia~~~a~f~~pe~~~Gl~---p~~g~------------~~~l~ 147 (257)
T PRK05862 85 TNWEKVARIRKPVIAAVAGYALGGGCELAMMCD--IIIAADTAKFGQPEIKLGVL---PGMGG------------SQRLT 147 (257)
T ss_pred HHHHHHHhCCCCEEEEEccEEeHHHHHHHHHCC--EEEEeCCCEEeCchhccCcC---CCccH------------HHHHH
Confidence 456678888999999999999999999999994 79999998876533332221 11100 00122
Q ss_pred HHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 191 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 191 ~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
+..| ...-.+++-....|+++||+++||||+|.+..
T Consensus 148 ~~vG--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 183 (257)
T PRK05862 148 RAVG--KAKAMDLCLTGRMMDAAEAERAGLVSRVVPAD 183 (257)
T ss_pred HHhC--HHHHHHHHHhCCccCHHHHHHcCCCCEeeCHh
Confidence 2222 22233444456789999999999999998753
No 78
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=97.41 E-value=0.0012 Score=59.71 Aligned_cols=97 Identities=14% Similarity=0.176 Sum_probs=67.8
Q ss_pred HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcc-cC-hHHHHHHHHHHHHHHHHHHHH
Q 025916 111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-GQ-ATDVEIARKEMKNVKAELVKL 188 (246)
Q Consensus 111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~-G~-a~di~i~a~el~~~~~~i~~i 188 (246)
.+++.|..++.||.+.+-|.|.+.|.-|++++ +.|++.++++|-+-.+..|.. +- ... .
T Consensus 98 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~~~~~-----------------~ 158 (273)
T PRK07396 98 DLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVC--DLTIAADNAIFGQTGPKVGSFDGGYGAS-----------------Y 158 (273)
T ss_pred HHHHHHHhCCCCEEEEECCEEehHHHHHHHhC--CEEEeeCCcEEecccccccccCCchHHH-----------------H
Confidence 35667778889999999999999999999999 479999999987644443321 11 111 0
Q ss_pred HHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 189 YAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 189 ya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
+.+..| .....+++-....|+|+||+++||||+|.+..
T Consensus 159 l~~~vG--~~~a~~l~ltg~~~~A~eA~~~GLv~~vv~~~ 196 (273)
T PRK07396 159 LARIVG--QKKAREIWFLCRQYDAQEALDMGLVNTVVPLA 196 (273)
T ss_pred HHHHhh--HHHHHHHHHhCCCcCHHHHHHcCCcCeecCHH
Confidence 111122 22333444456789999999999999998643
No 79
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=97.41 E-value=0.00075 Score=60.40 Aligned_cols=98 Identities=18% Similarity=0.188 Sum_probs=67.7
Q ss_pred HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHH
Q 025916 111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYA 190 (246)
Q Consensus 111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya 190 (246)
.++..|...+.||.+.+-|.|.+.|.-|++++ +.|++.++++|.+-....|.. .+..- ...+.
T Consensus 88 ~~~~~l~~~~kPvIaav~G~a~GgG~~lal~c--D~~va~~~a~f~~pe~~~Gl~---p~~g~------------~~~l~ 150 (260)
T PRK05809 88 KVFRKLENLDKPVIAAINGFALGGGCELSMAC--DIRIASEKAKFGQPEVGLGIT---PGFGG------------TQRLA 150 (260)
T ss_pred HHHHHHHcCCCCEEEEEcCeeecHHHHHHHhC--CEEEeeCCCEEeCcccccCCC---CCccH------------HHHHH
Confidence 46677888899999999999999999999999 479999999887644433322 11110 00112
Q ss_pred HHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccC
Q 025916 191 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYT 227 (246)
Q Consensus 191 ~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~ 227 (246)
+..| ...-.+++-.+..++++||+++||||+|.+.
T Consensus 151 ~~vG--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~ 185 (260)
T PRK05809 151 RIVG--PGKAKELIYTGDMINAEEALRIGLVNKVVEP 185 (260)
T ss_pred HHhC--HHHHHHHHHhCCCCCHHHHHHcCCCCcccCh
Confidence 2222 1233344444678999999999999999864
No 80
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=97.41 E-value=0.00096 Score=59.88 Aligned_cols=98 Identities=14% Similarity=0.123 Sum_probs=67.3
Q ss_pred HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcc-cChHHHHHHHHHHHHHHHHHHHHH
Q 025916 111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-GQATDVEIARKEMKNVKAELVKLY 189 (246)
Q Consensus 111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~-G~a~di~i~a~el~~~~~~i~~iy 189 (246)
.+++.|..++.||.+.+-|.|.+.|.-|.+++ +.|++.++++|.+-....|.. +-.. . ..+
T Consensus 89 ~~~~~l~~~~kPvIaav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~g~-~---------------~~l 150 (261)
T PRK08138 89 RYWEAIAQCPKPVIAAVNGYALGGGCELAMHA--DIIVAGESASFGQPEIKVGLMPGAGG-T---------------QRL 150 (261)
T ss_pred HHHHHHHhCCCCEEEEEccEEEcHHHHHHHhC--CEEEecCCCEeeCcccccccCCCCcH-H---------------HHH
Confidence 45667778889999999999999999999999 479999998876533333321 1100 0 012
Q ss_pred HHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 190 AKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 190 a~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
.+..| ...-.+++-....|+++||+++||||+|.+..
T Consensus 151 ~~~vG--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 187 (261)
T PRK08138 151 VRAVG--KFKAMRMALTGCMVPAPEALAIGLVSEVVEDE 187 (261)
T ss_pred HHHhC--HHHHHHHHHcCCCCCHHHHHHCCCCcEecCch
Confidence 22223 22333444456789999999999999998654
No 81
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=97.41 E-value=0.00067 Score=60.66 Aligned_cols=98 Identities=15% Similarity=0.045 Sum_probs=66.0
Q ss_pred HHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHH
Q 025916 112 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAK 191 (246)
Q Consensus 112 Iyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~ 191 (246)
++..|..++.||.+.+-|.|.+.|..|++++ +.|++.++++|.+-....|.. .+..-. ..+.+
T Consensus 85 ~~~~l~~~~kPvIaav~G~a~GgG~~lala~--D~ria~~~a~f~~pe~~lG~~---p~~g~~------------~~l~~ 147 (256)
T TIGR02280 85 LVRRLRALPLPVVCAVNGVAAGAGANLALAC--DIVLAAESARFIQAFAKIGLI---PDSGGT------------WSLPR 147 (256)
T ss_pred HHHHHHhCCCCEEEEECCeeehHHHHHHHhC--CEEEecCCCEEeChhhhcCCC---CCccHH------------HHHHH
Confidence 4567788899999999999999999999999 479999999886533332221 110000 00111
Q ss_pred HhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 192 HFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 192 ~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
..| ...-.+++-....|+++||+++||||+|.+..
T Consensus 148 ~vG--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 182 (256)
T TIGR02280 148 LVG--RARAMGLAMLGEKLDARTAASWGLIWQVVDDA 182 (256)
T ss_pred HhC--HHHHHHHHHcCCCCCHHHHHHcCCcceeeChH
Confidence 112 22223344456789999999999999998654
No 82
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=97.40 E-value=0.0013 Score=58.97 Aligned_cols=94 Identities=18% Similarity=0.183 Sum_probs=64.9
Q ss_pred hcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 025916 116 MGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGK 195 (246)
Q Consensus 116 m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~ 195 (246)
+..++.||.+.+-|.|.+.|.-|.+++ +.|++.++++|.+.....|..-..--. ..+.+..|
T Consensus 90 ~~~~~kPvIaav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~g~~---------------~~l~~~vg- 151 (259)
T PRK06494 90 RFDLDKPIIAAVNGVAMGGGFELALAC--DLIVAAENATFALPEPRVGLAALAGGL---------------HRLPRQIG- 151 (259)
T ss_pred HhcCCCCEEEEECCEEecHHHHHHHhC--CEEEEeCCCEEeCcccccCCCCCchHH---------------HHHHHHcC-
Confidence 345678999999999999999999999 479999999887654443321110000 01222233
Q ss_pred CHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 196 TPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 196 ~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
...-.+++-....++++||+++||||+|....
T Consensus 152 -~~~a~~lll~g~~~~a~eA~~~GLv~~vv~~~ 183 (259)
T PRK06494 152 -LKRAMGMILTGRRVTAREGLELGFVNEVVPAG 183 (259)
T ss_pred -HHHHHHHHHcCCcCCHHHHHHcCCCcEecCHh
Confidence 33334455557889999999999999998753
No 83
>COG3904 Predicted periplasmic protein [Function unknown]
Probab=97.39 E-value=0.00088 Score=59.35 Aligned_cols=138 Identities=13% Similarity=0.110 Sum_probs=96.1
Q ss_pred hHHHHHHhhCC-CCCEE-EEEcCCCCCCCCCCCchHHHHHHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEec
Q 025916 73 RSPVITMYEDV-EKPIY-LYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAAL 150 (246)
Q Consensus 73 ~~iiaqL~ed~-~k~I~-LyINSpG~~~~~~~~G~v~~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~ 150 (246)
....+.|-+++ .--+. +-+|||| |+|.+++++-..++..+-++..-...+|+|.-.++|++|. .|++-
T Consensus 91 ~sal~~lir~~G~y~~t~v~lnSpG--------Gsv~kA~~mgkLiRe~gfdt~v~s~A~CasaCpl~fagGv--rRvve 160 (245)
T COG3904 91 ASALGRLIRKAGLYIATGVTLNSPG--------GSVAKACSMGKLIREDGFDTAVDSGAMCASACPLMFAGGV--RRVVE 160 (245)
T ss_pred HHHHHHHHhccCceeEEEEEecCCC--------CcHHHHHhhhhhhhhcccCccccchhhhhccchhhhhcce--eeeec
Confidence 33444443333 33344 6799999 9999999999999999888777778899999899999984 79999
Q ss_pred cCceeeeecCCcCccc-ChHHHHHHHHHH-HHHHHHHHHHHHHHhCCCHHHHHHHh----cCCCccCHHHHHHcCCceE
Q 025916 151 PSSTIMIKQPIGRIEG-QATDVEIARKEM-KNVKAELVKLYAKHFGKTPEQIEADI----RRPKYFSPSEAVEYGIIDK 223 (246)
Q Consensus 151 Pns~iMiHqp~~~~~G-~a~di~i~a~el-~~~~~~i~~iya~~Tg~~~e~I~~~~----~rd~~~sa~EAleyGLID~ 223 (246)
|.+.+-+||+.....- .....+ ++.. .+...+ ...|-...|.+..-++... ++=++++.+|-.+|.|+.+
T Consensus 161 ~~ayiGVHq~~~~g~~~r~~~~~--a~Sanq~~tar-~a~ylrEMgigpgLlq~ml~tpp~dir~l~~kem~~~~L~t~ 236 (245)
T COG3904 161 DFAYIGVHQITTTGRRERIVNGK--AKSANQKVTAR-LAAYLREMGIGPGLLQMMLATPPSDIRQLGLKEMTAMKLVTS 236 (245)
T ss_pred ccceeeeeeccccCCccccCcHh--hhhhhhhhHHH-HHHHHHHcCCCHHHHHHHhcCChHhhhhhhHHHHhhhccccc
Confidence 9999999999854322 111111 1111 111222 2346677788877776655 3458899999999988753
No 84
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=97.39 E-value=0.0011 Score=59.12 Aligned_cols=97 Identities=14% Similarity=0.160 Sum_probs=65.9
Q ss_pred HHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHH
Q 025916 110 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLY 189 (246)
Q Consensus 110 ~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iy 189 (246)
..++..|..++.||...+-|.|.+.|.-+.++++ -|++.++++|.+-....|.. .+.. ....+
T Consensus 76 ~~~~~~l~~~~kP~Iaav~G~a~GgG~~lal~cD--~~ia~~~a~f~~pe~~~G~~---p~~g------------~~~~l 138 (243)
T PRK07854 76 IEMLHAIDAAPVPVIAAINGPAIGAGLQLAMACD--LRVVAPEAYFQFPVAKYGIA---LDNW------------TIRRL 138 (243)
T ss_pred HHHHHHHHhCCCCEEEEecCcccccHHHHHHhCC--EEEEcCCCEEeccccccccC---CCcc------------HHHHH
Confidence 3466677788899999999999999999999994 79999999876422222221 1100 00112
Q ss_pred HHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEc
Q 025916 190 AKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 225 (246)
Q Consensus 190 a~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii 225 (246)
.+..| ...-.+++-....|+++||+++||||+|.
T Consensus 139 ~~~~G--~~~a~~l~ltg~~~~a~eA~~~Glv~~v~ 172 (243)
T PRK07854 139 SSLVG--GGRARAMLLGAEKLTAEQALATGMANRIG 172 (243)
T ss_pred HHHhC--HHHHHHHHHcCCCcCHHHHHHCCCccccc
Confidence 22223 22333445457899999999999999994
No 85
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=97.39 E-value=0.001 Score=59.66 Aligned_cols=97 Identities=12% Similarity=0.156 Sum_probs=67.5
Q ss_pred HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHH
Q 025916 111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYA 190 (246)
Q Consensus 111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya 190 (246)
.++..|...+.||.+.+-|.|.+.|.-|+++++ -|++.++++|.+-....|... +... . .+.
T Consensus 90 ~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~Gl~p---~~g~-~------------~l~ 151 (262)
T PRK05995 90 DMLRAIYRCPKPVIARVHGDAYAGGMGLVAACD--IAVAADHAVFCLSEVRLGLIP---ATIS-P------------YVI 151 (262)
T ss_pred HHHHHHHcCCCCEEEEECCEEEhhHHHHHHhCC--EEEeeCCCEEeCcccccccCc---cchH-H------------HHH
Confidence 456667788899999999999999999999994 799999998866444333321 1100 0 011
Q ss_pred HHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccC
Q 025916 191 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYT 227 (246)
Q Consensus 191 ~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~ 227 (246)
+..| ...-.+++-...-++++||+++||||+|...
T Consensus 152 ~~vg--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~ 186 (262)
T PRK05995 152 RAMG--ERAARRYFLTAERFDAAEALRLGLVHEVVPA 186 (262)
T ss_pred HHhC--HHHHHHHHHcCCccCHHHHHHcCCCCeecCH
Confidence 2222 3333444545677999999999999999854
No 86
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=97.38 E-value=0.0009 Score=61.20 Aligned_cols=97 Identities=13% Similarity=0.116 Sum_probs=67.4
Q ss_pred HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHH
Q 025916 111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYA 190 (246)
Q Consensus 111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya 190 (246)
.++..|..++.||.+.+-|.|.+.|.-|.++++ -|++.++++|.+-....|..|- .. + .. .
T Consensus 109 ~~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD--~ria~e~a~f~~pe~~lGl~~~----~~----~-~l--------~ 169 (288)
T PRK08290 109 GMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCD--LIVASDDAFFSDPVVRMGIPGV----EY----F-AH--------P 169 (288)
T ss_pred HHHHHHHhCCCCEEEEECCEeeHHHHHHHHhCC--EEEeeCCCEecCcccccCcCcc----hH----H-HH--------H
Confidence 345567788999999999999999999999994 7999999988653333344221 00 0 00 0
Q ss_pred HHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 191 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 191 ~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
...| ...-.+++-....++|+||+++||||+|.+..
T Consensus 170 ~~iG--~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~ 205 (288)
T PRK08290 170 WELG--PRKAKELLFTGDRLTADEAHRLGMVNRVVPRD 205 (288)
T ss_pred HHhh--HHHHHHHHHcCCCCCHHHHHHCCCccEeeCHH
Confidence 1112 23334444456889999999999999998653
No 87
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=97.37 E-value=0.001 Score=59.84 Aligned_cols=100 Identities=15% Similarity=0.249 Sum_probs=67.5
Q ss_pred HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHH
Q 025916 111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYA 190 (246)
Q Consensus 111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya 190 (246)
.++..|..++.||.+.+-|.|.+.|.-+++++ +.|++.++++|-+-... ..|-..+... . ..+.
T Consensus 93 ~~~~~l~~~~kPvIaav~G~a~GgG~~lala~--D~~ia~~~a~f~~pe~~--~~G~~p~~g~----~--------~~l~ 156 (262)
T PRK06144 93 RVLGALEQLRVPTIAAIAGACVGGGAAIAAAC--DLRIATPSARFGFPIAR--TLGNCLSMSN----L--------ARLV 156 (262)
T ss_pred HHHHHHHhCCCCEEEEECCeeeehHHHHHHhC--CEEEecCCCEeechhHH--hccCCCCccH----H--------HHHH
Confidence 35566777889999999999999999999999 47999999988542221 0121111000 0 0122
Q ss_pred HHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 191 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 191 ~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
+..| .....+++-....|+++||+++||||+|.+..
T Consensus 157 ~~vG--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 192 (262)
T PRK06144 157 ALLG--AARVKDMLFTARLLEAEEALAAGLVNEVVEDA 192 (262)
T ss_pred HHhC--HHHHHHHHHcCCCcCHHHHHHcCCcCeecCHH
Confidence 2333 23344555557899999999999999998753
No 88
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=97.37 E-value=0.0012 Score=59.24 Aligned_cols=97 Identities=16% Similarity=0.180 Sum_probs=66.8
Q ss_pred HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcc-c-ChHHHHHHHHHHHHHHHHHHHH
Q 025916 111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-G-QATDVEIARKEMKNVKAELVKL 188 (246)
Q Consensus 111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~-G-~a~di~i~a~el~~~~~~i~~i 188 (246)
.+++.|..++.||.+.+-|.|.+.|.-|+++++ -|++.++++|-+-.+..|.. + -..- .
T Consensus 85 ~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD--~~ia~~~a~f~~pe~~~G~~~~~~~~~-----------------~ 145 (256)
T TIGR03210 85 ELHSAIRDVPKPVIARVQGYAIGGGNVLVTICD--LTIASEKAQFGQVGPKVGSVDPGYGTA-----------------L 145 (256)
T ss_pred HHHHHHHhCCCCEEEEECCEEehhhHHHHHhCC--EEEEeCCCEEecccccccccCCccHHH-----------------H
Confidence 356778888999999999999999999999994 79999999887644433321 1 0110 1
Q ss_pred HHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 189 YAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 189 ya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
+.+..|. ..-.+++-....|+|+||+++||||+|....
T Consensus 146 l~~~vG~--~~A~~lll~g~~~~a~eA~~~Glv~~vv~~~ 183 (256)
T TIGR03210 146 LARVVGE--KKAREIWYLCRRYTAQEALAMGLVNAVVPHD 183 (256)
T ss_pred HHHHhCH--HHHHHHHHhCCCcCHHHHHHcCCceeeeCHH
Confidence 1222221 2222333336789999999999999998643
No 89
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=97.36 E-value=0.00098 Score=59.86 Aligned_cols=97 Identities=13% Similarity=0.205 Sum_probs=68.2
Q ss_pred HHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHH
Q 025916 112 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAK 191 (246)
Q Consensus 112 Iyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~ 191 (246)
+++.|..++.||.+.+-|.|.+.|.-|+++++ .|++.++++|-+-....|.. .+.-- . .+..
T Consensus 92 ~~~~l~~~~kPvIaav~G~a~GgG~~lala~D--~ria~~~a~f~~pe~~~Gl~---p~~g~--~-----------~~~~ 153 (262)
T PRK07468 92 MLKALNDLPKPLIGRIQGQAFGGGVGLISVCD--VAIAVSGARFGLTETRLGLI---PATIS--P-----------YVVA 153 (262)
T ss_pred HHHHHHcCCCCEEEEECCEEEhHHHHHHHhCC--EEEEeCCCEEeCchhccCCC---cccch--h-----------hHHh
Confidence 67788889999999999999999999999994 79999999876543333321 11000 0 0111
Q ss_pred HhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 192 HFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 192 ~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
+. ......+++-...-++++||+++||||+|.+..
T Consensus 154 ~v--G~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~ 188 (262)
T PRK07468 154 RM--GEANARRVFMSARLFDAEEAVRLGLLSRVVPAE 188 (262)
T ss_pred hc--cHHHHHHHHHhCCccCHHHHHHcCCcceecCHH
Confidence 22 223344555557899999999999999998643
No 90
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=97.35 E-value=0.0013 Score=59.00 Aligned_cols=97 Identities=7% Similarity=0.047 Sum_probs=67.6
Q ss_pred HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHH
Q 025916 111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYA 190 (246)
Q Consensus 111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya 190 (246)
.++..|...+.||.+.+-|.|.+.|..|+++++ .|++.++++|-+.....|.. .+.. . ..+.
T Consensus 87 ~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D--~~ia~~~a~f~~pe~~~Gl~---p~~~--~-----------~~l~ 148 (255)
T PRK07112 87 DLWHRLATGPYVTIAHVRGKVNAGGIGFVAASD--IVIADETAPFSLSELLFGLI---PACV--L-----------PFLI 148 (255)
T ss_pred HHHHHHHcCCCCEEEEEecEEEcchhHHHHcCC--EEEEcCCCEEeCchhhhccC---cchh--h-----------HHHH
Confidence 356667778899999999999999999999994 79999999986644433332 1110 0 0112
Q ss_pred HHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccC
Q 025916 191 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYT 227 (246)
Q Consensus 191 ~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~ 227 (246)
...| .....+++-...-|+++||+++||||+|...
T Consensus 149 ~~vg--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~ 183 (255)
T PRK07112 149 RRIG--TQKAHYMTLMTQPVTAQQAFSWGLVDAYGAN 183 (255)
T ss_pred HHhC--HHHHHHHHHhCCcccHHHHHHcCCCceecCc
Confidence 2222 2333444545678999999999999999864
No 91
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=97.35 E-value=0.0014 Score=58.80 Aligned_cols=97 Identities=13% Similarity=0.153 Sum_probs=67.8
Q ss_pred HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcc-c-ChHHHHHHHHHHHHHHHHHHHH
Q 025916 111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-G-QATDVEIARKEMKNVKAELVKL 188 (246)
Q Consensus 111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~-G-~a~di~i~a~el~~~~~~i~~i 188 (246)
.+++.|..++.||.+.+-|.|.+.|.-|.++++ .|++.++++|.+-....|.. + -....
T Consensus 88 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD--~~ia~~~a~f~~pe~~~G~~p~~~~~~~----------------- 148 (259)
T TIGR01929 88 DVQRQIRTCPKPVIAMVNGYAIGGGHVLHVVCD--LTIAAENARFGQTGPKVGSFDGGYGSSY----------------- 148 (259)
T ss_pred HHHHHHHhCCCCEEEEEcCEEehHHHHHHHhCC--EEEecCCCEecCcccccccCCCccHHHH-----------------
Confidence 456677888899999999999999999999994 79999999987765554431 1 11110
Q ss_pred HHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 189 YAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 189 ya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
+.+..| ...-.+++-....++++||+++||||+|.+..
T Consensus 149 l~~~vG--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 186 (259)
T TIGR01929 149 LARIVG--QKKAREIWFLCRQYDAEQALDMGLVNTVVPLA 186 (259)
T ss_pred HHHHhH--HHHHHHHHHhCCccCHHHHHHcCCcccccCHH
Confidence 111111 11223344446789999999999999998643
No 92
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=97.35 E-value=0.0011 Score=59.43 Aligned_cols=97 Identities=15% Similarity=0.071 Sum_probs=66.6
Q ss_pred HHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcc-cChHHHHHHHHHHHHHHHHHHHHHH
Q 025916 112 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-GQATDVEIARKEMKNVKAELVKLYA 190 (246)
Q Consensus 112 Iyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~-G~a~di~i~a~el~~~~~~i~~iya 190 (246)
++..|..++.||.+.+-|.|.+.|.-|++++ +-|++.++++|.+-....|.. +-..- . .+.
T Consensus 91 ~~~~l~~~~kPvIaav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~G~~p~~g~~-~---------------~l~ 152 (262)
T PRK08140 91 LVRRLRALPLPVIAAVNGVAAGAGANLALAC--DIVLAARSASFIQAFVKIGLVPDSGGT-W---------------FLP 152 (262)
T ss_pred HHHHHHhCCCCEEEEECCeeehhHHHHHHhC--CEEEecCCCEEeccccccCCCCCccHH-H---------------HHH
Confidence 5667778899999999999999999999999 579999999986533322221 11000 0 011
Q ss_pred HHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 191 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 191 ~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
+..| .....+++-...-|+++||+++||||+|.+..
T Consensus 153 ~~vG--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 188 (262)
T PRK08140 153 RLVG--MARALGLALLGEKLSAEQAEQWGLIWRVVDDA 188 (262)
T ss_pred HHhC--HHHHHHHHHcCCCcCHHHHHHcCCccEeeChH
Confidence 1112 22334445456789999999999999998654
No 93
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=97.34 E-value=0.0011 Score=60.24 Aligned_cols=99 Identities=13% Similarity=0.081 Sum_probs=69.1
Q ss_pred HHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHH
Q 025916 112 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAK 191 (246)
Q Consensus 112 Iyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~ 191 (246)
++..|...+.||.+.+-|.|.+.|..|++++ +.|++.++++|-+-....|.. ..+... ...+.+
T Consensus 99 ~~~~l~~~~kPvIAaV~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~lGl~--~p~~~~------------~~~l~~ 162 (278)
T PLN03214 99 FLVRLLRSRLATVCAIRGACPAGGCAVSLCC--DYRLQTTEGTMGLNEVALGIP--VPKFWA------------RLFMGR 162 (278)
T ss_pred HHHHHHcCCCCEEEEEcCcccchHHHHHHhC--CEEEecCCCEecCcHHHhCCC--CCChhH------------HHHHHH
Confidence 4566778889999999999999999999999 479999999886633333321 011100 012333
Q ss_pred HhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 192 HFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 192 ~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
..| ...-.+++-...-|+++||+++||||+|....
T Consensus 163 ~~G--~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~ 197 (278)
T PLN03214 163 VID--RKVAESLLLRGRLVRPAEAKQLGLIDEVVPAA 197 (278)
T ss_pred hcC--HHHHHHHHHcCCccCHHHHHHcCCCcEecChH
Confidence 333 34444555567889999999999999998653
No 94
>PLN02600 enoyl-CoA hydratase
Probab=97.33 E-value=0.0011 Score=59.26 Aligned_cols=99 Identities=11% Similarity=0.074 Sum_probs=66.4
Q ss_pred HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHH
Q 025916 111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYA 190 (246)
Q Consensus 111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya 190 (246)
.++..|...+.||.+.+-|.|.+.|.-|.+++ +.|++.++++|.+-....|.. .+..- . ..+.
T Consensus 79 ~~~~~l~~~~kPvIAav~G~a~GgG~~lala~--D~~ia~~~a~f~~pe~~~Gl~---p~~g~----~--------~~l~ 141 (251)
T PLN02600 79 STFSSLEALSIPTIAVVEGAALGGGLELALSC--DLRICGEEAVFGLPETGLAII---PGAGG----T--------QRLP 141 (251)
T ss_pred HHHHHHHhCCCCEEEEecCeecchhHHHHHhC--CEEEeeCCCEEeCcccccCcC---CCchH----H--------HHHH
Confidence 34566777889999999999999999999999 479999999887632222221 11000 0 0011
Q ss_pred HHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 191 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 191 ~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
+.. ....-.+++-....|+++||+++||||+|.+..
T Consensus 142 ~~~--G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 177 (251)
T PLN02600 142 RLV--GRSRAKELIFTGRRIGAREAASMGLVNYCVPAG 177 (251)
T ss_pred HHh--CHHHHHHHHHhCCccCHHHHHHcCCCcEeeChh
Confidence 111 222233444446789999999999999998654
No 95
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=97.31 E-value=0.0012 Score=59.62 Aligned_cols=98 Identities=13% Similarity=0.097 Sum_probs=64.6
Q ss_pred HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcc-cChHHHHHHHHHHHHHHHHHHHHH
Q 025916 111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-GQATDVEIARKEMKNVKAELVKLY 189 (246)
Q Consensus 111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~-G~a~di~i~a~el~~~~~~i~~iy 189 (246)
.++..|..++.||.+.+-|.|.+.|.-|.+++ +.|++.++++|-+-....|.. +...-. . +
T Consensus 97 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~g~~~-~---------------l 158 (268)
T PRK07327 97 DLVYNVINCDKPIVSAIHGPAVGAGLVAALLA--DISIAAKDARIIDGHTRLGVAAGDHAAI-V---------------W 158 (268)
T ss_pred HHHHHHHcCCCCEEEEEcCeeeehhhHHHHhC--CEEEecCCCEEeCcccccCCCCCcchhh-H---------------H
Confidence 34555667789999999999999999999999 479999999886533333321 111100 0 0
Q ss_pred HHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 190 AKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 190 a~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
....| ...-.+++-....|+|+||+++||||+|.+..
T Consensus 159 ~~~vG--~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 195 (268)
T PRK07327 159 PLLCG--MAKAKYYLLLCEPVSGEEAERIGLVSLAVDDD 195 (268)
T ss_pred HHHhC--HHHHHHHHHcCCccCHHHHHHcCCcceecCHH
Confidence 11111 12222344446789999999999999998643
No 96
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=97.27 E-value=0.0011 Score=59.93 Aligned_cols=100 Identities=15% Similarity=0.172 Sum_probs=66.8
Q ss_pred HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHH
Q 025916 111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYA 190 (246)
Q Consensus 111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya 190 (246)
.+++.|..++.||.+.+-|.|.+.|.-|++++ +-|++.++++|.+-....|... .+... ...+.
T Consensus 100 ~~~~~l~~~~kPvIaav~G~a~GgG~~Lalac--D~ria~~~a~f~~pe~~~Gl~p--~~~g~------------~~~l~ 163 (276)
T PRK05864 100 DVILALRRLHQPVIAAVNGPAIGGGLCLALAA--DIRVASSSAYFRAAGINNGLTA--SELGL------------SYLLP 163 (276)
T ss_pred HHHHHHHhCCCCEEEEECCEeehhHHHHHHhC--CEEEeeCCCEecCcccccCCCC--CCcch------------heehH
Confidence 35567778899999999999999999999999 4799999988865333333210 01000 00122
Q ss_pred HHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 191 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 191 ~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
+..| .....+++-....++++||+++||||+|.+..
T Consensus 164 ~~vG--~~~A~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 199 (276)
T PRK05864 164 RAIG--SSRAFEIMLTGRDVDAEEAERIGLVSRQVPDE 199 (276)
T ss_pred hhhC--HHHHHHHHHcCCccCHHHHHHcCCcceeeCHH
Confidence 2233 23334444345678999999999999998653
No 97
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=97.25 E-value=0.0013 Score=58.84 Aligned_cols=97 Identities=15% Similarity=0.135 Sum_probs=67.5
Q ss_pred HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHH
Q 025916 111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYA 190 (246)
Q Consensus 111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya 190 (246)
.++..|..++.||.+.+-|.|.+.|.-|.++++ -|++.++++|-+-....|... ..- . ..+.
T Consensus 80 ~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD--~~ia~~~a~f~~pe~~~Gl~p---~~~--~-----------~~l~ 141 (251)
T TIGR03189 80 KLVIAMLDSPVPILVAVRGQCLGGGLEVAAAGN--LMFAAPDAKLGQPEIVLGVFA---PAA--S-----------CLLP 141 (251)
T ss_pred HHHHHHHhCCCCEEEEecCeeeeHHHHHHHhCC--EEEEcCCCEEeCchhhcCCCC---Cch--H-----------HHHH
Confidence 355667788899999999999999999999994 799999988765333333211 110 0 0122
Q ss_pred HHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccC
Q 025916 191 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYT 227 (246)
Q Consensus 191 ~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~ 227 (246)
+..| .....+++-...-|+++||+++||||+|.+.
T Consensus 142 ~~vg--~~~a~~l~ltg~~~~a~eA~~~Glv~~v~~~ 176 (251)
T TIGR03189 142 ERMG--RVAAEDLLYSGRSIDGAEGARIGLANAVAED 176 (251)
T ss_pred HHhC--HHHHHHHHHcCCCCCHHHHHHCCCcceecCc
Confidence 2333 3334455555677999999999999999853
No 98
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=97.24 E-value=0.00093 Score=59.94 Aligned_cols=92 Identities=18% Similarity=0.093 Sum_probs=66.0
Q ss_pred HHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcc---cChHHHHHHHHHHHHHHHHHHHH
Q 025916 112 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE---GQATDVEIARKEMKNVKAELVKL 188 (246)
Q Consensus 112 Iyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~---G~a~di~i~a~el~~~~~~i~~i 188 (246)
++..|..++.||.+.+-|.|.+.|.-|++++ +.|++.++++|-+.....|.. |-..-
T Consensus 90 ~~~~l~~~~~pvIaav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~g~~~~------------------ 149 (260)
T PRK07659 90 IVVTLYTMPKLTISAIHGPAAGLGLSIALTA--DYVIADISAKLAMNFIGIGLIPDGGGHFF------------------ 149 (260)
T ss_pred HHHHHHhCCCCEEEEecCceecHHHHHHHhC--CEEEEcCCCEEcCchhhcCCCCCCchhhh------------------
Confidence 4455667789999999999999999999999 479999999886544433321 11111
Q ss_pred HHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEc
Q 025916 189 YAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 225 (246)
Q Consensus 189 ya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii 225 (246)
+.+.. ......+++-....|+++||+++||||+|.
T Consensus 150 L~~~v--g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv 184 (260)
T PRK07659 150 LQKRV--GENKAKQIIWEGKKLSATEALDLGLIDEVI 184 (260)
T ss_pred HHHhc--CHHHHHHHHHhCCccCHHHHHHcCChHHHh
Confidence 11222 334445555567889999999999999998
No 99
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=97.23 E-value=0.0019 Score=57.67 Aligned_cols=96 Identities=19% Similarity=0.233 Sum_probs=69.3
Q ss_pred HHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCc-ccC-hHHHHHHHHHHHHHHHHHHHHH
Q 025916 112 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRI-EGQ-ATDVEIARKEMKNVKAELVKLY 189 (246)
Q Consensus 112 Iyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~-~G~-a~di~i~a~el~~~~~~i~~iy 189 (246)
++..|..++.||.+.+-|.|.+.|.-|++++ +-|++.++++|-+.....|. -|. .+.. +
T Consensus 90 ~~~~l~~~~kPvIAav~G~a~GgG~eLal~~--D~ria~~~a~f~~pe~~iGl~Pg~g~~~~-----------------l 150 (257)
T COG1024 90 LLRALADLPKPVIAAVNGYALGGGLELALAC--DIRIAAEDAKFGLPEVNLGLLPGDGGTQR-----------------L 150 (257)
T ss_pred HHHHHHhCCCCEEEEEcceEeechhhhhhcC--CeEEecCCcEecCcccccccCCCCcHHHH-----------------H
Confidence 6778888899999999999999999999999 47999999999876665443 221 1111 1
Q ss_pred HHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 190 AKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 190 a~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
.+..| ...-.+++--+..++++||+++||||++....
T Consensus 151 ~r~~G--~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 187 (257)
T COG1024 151 PRLLG--RGRAKELLLTGEPISAAEALELGLVDEVVPDA 187 (257)
T ss_pred HHhcC--HHHHHHHHHcCCcCCHHHHHHcCCcCeeeCCH
Confidence 11111 11222244447889999999999999988754
No 100
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=97.23 E-value=0.0015 Score=58.73 Aligned_cols=93 Identities=15% Similarity=0.088 Sum_probs=64.4
Q ss_pred hcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcc-cChHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 025916 116 MGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-GQATDVEIARKEMKNVKAELVKLYAKHFG 194 (246)
Q Consensus 116 m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~-G~a~di~i~a~el~~~~~~i~~iya~~Tg 194 (246)
+..++.||.+.+-|.|.+.|.-|++++ +-|++.++++|-+.....|.. +-..- ..+.+..
T Consensus 96 ~~~~~kpvIaav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~g~~----------------~~l~r~v- 156 (263)
T PRK07799 96 GRRLTKPLIAAVEGPAIAGGTEILQGT--DIRVAGESAKFGISEAKWSLFPMGGSA----------------VRLVRQI- 156 (263)
T ss_pred HhcCCCCEEEEECCeEeccHHHHHHhC--CEEEecCCCEecCcccccCcCCCccHH----------------HHHHHHh-
Confidence 456788999999999999999999999 479999999876543333321 11000 0111122
Q ss_pred CCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 195 KTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 195 ~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
......+++-....|+++||+++||||+|.+..
T Consensus 157 -G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 189 (263)
T PRK07799 157 -PYTVACDLLLTGRHITAAEAKEIGLIGHVVPDG 189 (263)
T ss_pred -CHHHHHHHHHcCCCCCHHHHHHcCCccEecCcc
Confidence 233344455557889999999999999998754
No 101
>PRK08788 enoyl-CoA hydratase; Validated
Probab=97.21 E-value=0.0032 Score=57.88 Aligned_cols=92 Identities=15% Similarity=0.153 Sum_probs=62.6
Q ss_pred ccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Q 025916 118 YVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTP 197 (246)
Q Consensus 118 ~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~ 197 (246)
..+.||.+.+-|.|.+.|.-|.++++ .|++.++++|-+-....|. ..+..- ...+.+..| .
T Consensus 119 ~~pkPvIAaV~G~a~GgG~~LalacD--~ria~~~a~f~~pev~lGl---~p~~g~------------~~~l~~~vG--~ 179 (287)
T PRK08788 119 GAGAISIALVQGDALGGGFEAALSHH--TIIAERGAKMGFPEILFNL---FPGMGA------------YSFLARRVG--P 179 (287)
T ss_pred CCCCCEEEEECCeeehHHHHHHHhCC--EEEecCCCEeeCchhhhCc---CCCchH------------HHHHHHHhh--H
Confidence 46789999999999999999999994 7999999877542222222 111110 111223333 2
Q ss_pred HHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 198 EQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 198 e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
..-.+++-.+..|+++||+++||||+|.+..
T Consensus 180 ~~A~ellltG~~l~A~eA~~~GLV~~vv~~~ 210 (287)
T PRK08788 180 KLAEELILSGKLYTAEELHDMGLVDVLVEDG 210 (287)
T ss_pred HHHHHHHHcCCCCCHHHHHHCCCCcEecCch
Confidence 3334555567789999999999999998654
No 102
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=97.17 E-value=0.0018 Score=59.78 Aligned_cols=124 Identities=24% Similarity=0.340 Sum_probs=82.0
Q ss_pred hhCCCCCEEEEEcCCCCCC--CCCCCchHHHHHHHHH---HhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCce
Q 025916 80 YEDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYD---VMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSST 154 (246)
Q Consensus 80 ~ed~~k~I~LyINSpG~~~--~~~~~G~v~~g~aIyd---~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~ 154 (246)
.+.=.-||..+|++||.-. .-|.-|. +-+|.- .|-.++.||.++++|...|.|++-++-|+ +.+++.||+
T Consensus 146 AekF~lPiitfIDT~GAypG~~AEErGQ---~eAIA~nL~em~~LkvPiI~iVIGEGgSGGALAi~vad--~V~mle~s~ 220 (317)
T COG0825 146 AEKFGLPIITFIDTPGAYPGIGAEERGQ---SEAIARNLREMARLKVPIISIVIGEGGSGGALAIGVAD--RVLMLENST 220 (317)
T ss_pred HHHhCCCEEEEecCCCCCCCcchhhccc---HHHHHHHHHHHhCCCCCEEEEEecCCCchhhHHhhHHH--HHHHHHhce
Confidence 3444689999999999321 2222232 233333 45566899999999999999999999994 678999999
Q ss_pred eeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCCCCCCCc
Q 025916 155 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKSPEDH 234 (246)
Q Consensus 155 iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~~~~~~~ 234 (246)
+..=.|.+-. +=+ ++.-. +.. +..+. .-+|+++-+++||||.|+..+.....+
T Consensus 221 ySVisPEG~A----sIL---WkD~~---------------ka~-eAAe~----mkita~dLk~lgiID~II~Ep~ggAhr 273 (317)
T COG0825 221 YSVISPEGCA----SIL---WKDAS---------------KAK-EAAEA----MKITAHDLKELGIIDGIIPEPLGGAHR 273 (317)
T ss_pred eeecChhhhh----hhh---hcChh---------------hhH-HHHHH----cCCCHHHHHhCCCcceeccCCCCcccc
Confidence 9888887532 111 11100 111 11111 236788999999999999888766544
Q ss_pred c
Q 025916 235 G 235 (246)
Q Consensus 235 ~ 235 (246)
+
T Consensus 274 ~ 274 (317)
T COG0825 274 D 274 (317)
T ss_pred C
Confidence 4
No 103
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=97.17 E-value=0.002 Score=57.73 Aligned_cols=92 Identities=13% Similarity=0.013 Sum_probs=63.0
Q ss_pred ccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Q 025916 118 YVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTP 197 (246)
Q Consensus 118 ~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~ 197 (246)
.++.||.+.+-|.|.+.|.-+++++ +.|++.++++|-+-....|.. .+..- . ..+.+..| .
T Consensus 91 ~~~kPvIaav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~Gl~---p~~g~----~--------~~l~~~iG--~ 151 (254)
T PRK08259 91 RLSKPVIAAVSGYAVAGGLELALWC--DLRVAEEDAVFGVFCRRWGVP---LIDGG----T--------VRLPRLIG--H 151 (254)
T ss_pred cCCCCEEEEECCEEEhHHHHHHHhC--CEEEecCCCEecCcccccCCC---CCccH----H--------HHHHHHhC--H
Confidence 4578999999999999999999999 589999999875533222221 11000 0 01122223 3
Q ss_pred HHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 198 EQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 198 e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
..-.+++-....|+++||+++||||+|....
T Consensus 152 ~~a~~lll~g~~~~a~eA~~~Glv~~vv~~~ 182 (254)
T PRK08259 152 SRAMDLILTGRPVDADEALAIGLANRVVPKG 182 (254)
T ss_pred HHHHHHHHcCCccCHHHHHHcCCCCEeeChh
Confidence 3444555567889999999999999998754
No 104
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=97.16 E-value=0.0023 Score=57.10 Aligned_cols=94 Identities=13% Similarity=0.087 Sum_probs=62.2
Q ss_pred HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHH
Q 025916 111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYA 190 (246)
Q Consensus 111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya 190 (246)
.++..|...+.||.+.+-|.|.+.|.-+.+++ +-|++.++++|.+.....|.. .+.... ..+.
T Consensus 80 ~~~~~l~~~~kPvIaav~G~a~GgG~~lal~c--D~~ia~~~a~f~~~~~~~Gl~---p~~g~~------------~~l~ 142 (248)
T PRK06072 80 PIIREIRFSDKIYISAINGVTAGACIGIALST--DFKFASRDVKFVTAFQRLGLA---SDTGVA------------YFLL 142 (248)
T ss_pred HHHHHHHhCCCCEEEEECCeeehHHHHHHHhC--CEEEEcCCCEEecchhhcCcC---CCchHH------------HHHH
Confidence 35566777889999999999999999999998 479999999987654443332 111100 0011
Q ss_pred HHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEE
Q 025916 191 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKV 224 (246)
Q Consensus 191 ~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~I 224 (246)
+..| . ...+++-....|+|+||+++||||++
T Consensus 143 ~~~g--~-~a~~lll~g~~~~a~eA~~~Glv~~~ 173 (248)
T PRK06072 143 KLTG--Q-RFYEILVLGGEFTAEEAERWGLLKIS 173 (248)
T ss_pred HHhh--H-HHHHHHHhCCccCHHHHHHCCCcccc
Confidence 1112 1 12223333566899999999999964
No 105
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=97.16 E-value=0.0021 Score=59.11 Aligned_cols=94 Identities=12% Similarity=0.017 Sum_probs=68.3
Q ss_pred HHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCC-cCcccChHHHHHHHHHHHHHHHHHHHHHH
Q 025916 112 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI-GRIEGQATDVEIARKEMKNVKAELVKLYA 190 (246)
Q Consensus 112 Iyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~-~~~~G~a~di~i~a~el~~~~~~i~~iya 190 (246)
.+..|..++.||.+.+-|.|.+.|.-|.++|+ -|++.++++|-+-... +|... ... +.
T Consensus 104 ~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD--~ria~~~A~f~~pe~~l~G~~~--~~~-----------------~~ 162 (298)
T PRK12478 104 KFMAIWRASKPVIAQVHGWCVGGASDYALCAD--IVIASDDAVIGTPYSRMWGAYL--TGM-----------------WL 162 (298)
T ss_pred HHHHHHhCCCCEEEEEccEEehhHHHHHHHCC--EEEEcCCcEEeccccccccCCc--hhH-----------------HH
Confidence 45567788899999999999999999999994 7999999998764444 23221 000 00
Q ss_pred HHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 191 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 191 ~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
.+. ....-.+++-....|+|+||+++||||+|....
T Consensus 163 ~~v--G~~~A~~llltg~~i~A~eA~~~GLV~~vv~~~ 198 (298)
T PRK12478 163 YRL--SLAKVKWHSLTGRPLTGVQAAEAELINEAVPFE 198 (298)
T ss_pred HHh--hHHHHHHHHHcCCccCHHHHHHcCCcceecCHH
Confidence 112 234445566567899999999999999998653
No 106
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=97.16 E-value=0.0036 Score=59.51 Aligned_cols=99 Identities=20% Similarity=0.095 Sum_probs=68.2
Q ss_pred HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcc--cChHHHHHHHHHHHHHHHHHHHH
Q 025916 111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE--GQATDVEIARKEMKNVKAELVKL 188 (246)
Q Consensus 111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~--G~a~di~i~a~el~~~~~~i~~i 188 (246)
.+++.|..++.||.+.+-|.|.+.|.-|.++|+ .|++.++++|-+-.+..|.. +-.+..
T Consensus 115 ~l~~~i~~~pKPVIAAVnG~AiGGGleLALaCD--lrIAse~A~Fg~PE~rlGl~P~~Ggt~r----------------- 175 (360)
T TIGR03200 115 DMVSAILGCDKPVICRVNGMRIGGGQEIGMAAD--FTIAQDLANFGQAGPKHGSAPIGGATDF----------------- 175 (360)
T ss_pred HHHHHHHhCCCCEEEEECCEeeeHHHHHHHhCC--EEEEcCCCEEeCchhccCCCCCccHHHH-----------------
Confidence 566778888999999999999999999999994 79999999887644443321 111111
Q ss_pred HHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCCCC
Q 025916 189 YAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKS 230 (246)
Q Consensus 189 ya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~~~ 230 (246)
+....| ...-..++-....|+|+||+++||||+|.+..+.
T Consensus 176 LprlvG--~~rA~~llltGe~~sA~EA~~~GLVd~VVp~~~~ 215 (360)
T TIGR03200 176 LPLMIG--CEQAMVSGTLCEPWSAHKAKRLGIIMDVVPALKV 215 (360)
T ss_pred HHHhhC--HHHHHHHHHhCCcCcHHHHHHcCChheecCchhc
Confidence 111111 1222222323568999999999999999876553
No 107
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=97.11 E-value=0.0026 Score=56.87 Aligned_cols=92 Identities=10% Similarity=-0.001 Sum_probs=62.8
Q ss_pred ccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Q 025916 118 YVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTP 197 (246)
Q Consensus 118 ~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~ 197 (246)
..+.||.+.+-|.|.+.|.-|+++++ .|++.++++|-+-....|.. .+..- ...+.+..| .
T Consensus 89 ~~~kPvIaav~G~a~GgG~~lalacD--~~ia~~~a~f~~pe~~~Gl~---p~~g~------------~~~l~~~vg--~ 149 (254)
T PRK08252 89 PPRKPLIAAVEGYALAGGFELALACD--LIVAARDAKFGLPEVKRGLV---AAGGG------------LLRLPRRIP--Y 149 (254)
T ss_pred cCCCCEEEEECCEEehHHHHHHHhCC--EEEEeCCCEEeCchhhcCCC---CCchH------------HHHHHHHcC--H
Confidence 46789999999999999999999994 79999999885533322221 11100 001222223 3
Q ss_pred HHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 198 EQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 198 e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
..-.+++-...-|+++||+++||||+|....
T Consensus 150 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 180 (254)
T PRK08252 150 HIAMELALTGDMLTAERAHELGLVNRLTEPG 180 (254)
T ss_pred HHHHHHHHcCCccCHHHHHHcCCcceecCcc
Confidence 3344555557789999999999999998654
No 108
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=97.05 E-value=0.004 Score=56.15 Aligned_cols=97 Identities=14% Similarity=0.155 Sum_probs=65.6
Q ss_pred HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHH
Q 025916 111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYA 190 (246)
Q Consensus 111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya 190 (246)
.++..|..++.||.+.+-|.|.+.|.-++++++ -|++.++++|.+-....|.. .+... . .+.
T Consensus 92 ~~~~~l~~~~kPvIaaV~G~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~Gi~---p~~~~--~-----------~l~ 153 (265)
T PRK05674 92 ELMYNLYRLKIPTLAVVQGAAFGGALGLISCCD--MAIGADDAQFCLSEVRIGLA---PAVIS--P-----------FVV 153 (265)
T ss_pred HHHHHHHcCCCCEEEEEcCEEEechhhHhhhcC--EEEEeCCCEEeCcccccCCC---cchhH--H-----------HHH
Confidence 355567777899999999999999999999994 79999999887633222221 12110 0 011
Q ss_pred HHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccC
Q 025916 191 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYT 227 (246)
Q Consensus 191 ~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~ 227 (246)
+..|. ..-.+++-...-|+++||+++||||+|.+.
T Consensus 154 ~~vG~--~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~ 188 (265)
T PRK05674 154 KAIGE--RAARRYALTAERFDGRRARELGLLAESYPA 188 (265)
T ss_pred HHhCH--HHHHHHHHhCcccCHHHHHHCCCcceecCH
Confidence 12222 233334434667999999999999999864
No 109
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=96.99 E-value=0.0016 Score=58.16 Aligned_cols=93 Identities=20% Similarity=0.138 Sum_probs=64.9
Q ss_pred HHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcc-c-ChHHHHHHHHHHHHHHHHHHHHH
Q 025916 112 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-G-QATDVEIARKEMKNVKAELVKLY 189 (246)
Q Consensus 112 Iyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~-G-~a~di~i~a~el~~~~~~i~~iy 189 (246)
.+..|...+.||.+.+-|.|.+.|.-+.+++ +.|++.++++|.+.....|.. + -..- .+
T Consensus 87 ~~~~l~~~~kPvIaav~G~a~GgG~~lal~c--D~ria~~~a~f~~pe~~~G~~p~~g~~~-----------------~l 147 (249)
T PRK05870 87 GFLAVASCPLPTIAAVNGAAVGAGLNLALAA--DVRIAGPKALFDARFQKLGLHPGGGATW-----------------ML 147 (249)
T ss_pred HHHHHHhCCCCEEEEECCEeEchhHHHHHhC--CEEEEcCCCEEeCcccccCcCCCCccee-----------------eH
Confidence 4556777889999999999999999999999 479999999987554433321 1 0100 01
Q ss_pred HHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEc
Q 025916 190 AKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 225 (246)
Q Consensus 190 a~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii 225 (246)
.+.. ......+++-.+..++++||+++||||+|.
T Consensus 148 ~~~~--G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv 181 (249)
T PRK05870 148 QRAV--GPQVARAALLFGMRFDAEAAVRHGLALMVA 181 (249)
T ss_pred Hhhh--CHHHHHHHHHhCCccCHHHHHHcCCHHHHH
Confidence 1221 223334444446789999999999999998
No 110
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=96.99 E-value=0.0048 Score=56.65 Aligned_cols=95 Identities=14% Similarity=0.154 Sum_probs=67.1
Q ss_pred HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHH
Q 025916 111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYA 190 (246)
Q Consensus 111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya 190 (246)
.++..|...+.||.+.+-|.|.+.|.-|+++++ -|++.++++|-+ |.....|-+.. . .+.
T Consensus 118 ~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD--~~ias~~a~f~~--pe~~~gg~~~~-~---------------~~~ 177 (302)
T PRK08272 118 RGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCD--QVIAADDAKIGY--PPTRVWGVPAT-G---------------MWA 177 (302)
T ss_pred HHHHHHHhCCCCEEEEEccEeehhhHHHHHhCC--EEEEeCCCEecC--cchhcccCChH-H---------------HHH
Confidence 356677788999999999999999999999994 799999998743 33222222111 0 011
Q ss_pred HHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccC
Q 025916 191 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYT 227 (246)
Q Consensus 191 ~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~ 227 (246)
...| ...-.+++-....|+++||+++||||+|.+.
T Consensus 178 ~~vG--~~~A~~llltG~~i~a~eA~~~GLv~~vv~~ 212 (302)
T PRK08272 178 YRLG--PQRAKRLLFTGDCITGAQAAEWGLAVEAVPP 212 (302)
T ss_pred HHhh--HHHHHHHHHcCCccCHHHHHHcCCCceecCH
Confidence 1222 3344455556788999999999999999864
No 111
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=96.98 E-value=0.008 Score=53.52 Aligned_cols=97 Identities=15% Similarity=0.140 Sum_probs=64.8
Q ss_pred HHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEecc-CceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHH
Q 025916 112 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALP-SSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYA 190 (246)
Q Consensus 112 Iyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~P-ns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya 190 (246)
++..|..++.||.+.+-|.|.+.|..|+++++ .|++.+ .++|.+-....|.. ..+.. ...+.
T Consensus 86 ~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD--~ria~~~~a~f~~pe~~~Gl~--~p~~~-------------~~~l~ 148 (239)
T PLN02267 86 LVADLISLPMPTIAAVTGHASAAGFILALSHD--YVLMRKDRGVLYMSEVDIGLP--LPDYF-------------MALLR 148 (239)
T ss_pred HHHHHhcCCCCEEEEECCcchHHHHHHHHHCC--EEEecCCCCeEeccccccCCC--CChHH-------------HHHHH
Confidence 55667788899999999999999999999984 799985 45665433333321 01110 11122
Q ss_pred HHhCCCHHHH-HHHhcCCCccCHHHHHHcCCceEEccC
Q 025916 191 KHFGKTPEQI-EADIRRPKYFSPSEAVEYGIIDKVLYT 227 (246)
Q Consensus 191 ~~Tg~~~e~I-~~~~~rd~~~sa~EAleyGLID~Ii~~ 227 (246)
...|.+ .- .+++-....|+++||+++||||+|...
T Consensus 149 ~~vG~~--~a~~~llltG~~~~a~eA~~~Glv~~vv~~ 184 (239)
T PLN02267 149 AKIGSP--AARRDVLLRAAKLTAEEAVEMGIVDSAHDS 184 (239)
T ss_pred HHcChH--HHHHHHHHcCCcCCHHHHHHCCCcceecCC
Confidence 333322 22 244555788999999999999999864
No 112
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=96.96 E-value=0.0014 Score=64.81 Aligned_cols=133 Identities=20% Similarity=0.304 Sum_probs=82.0
Q ss_pred hhCCCCCEEEEEcCCCCCC--CCCCCchHHHHHHHHHHhcccCCCEEEEEecccchHHHHHHhcc--cCCcEEeccCcee
Q 025916 80 YEDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAG--AKGNRAALPSSTI 155 (246)
Q Consensus 80 ~ed~~k~I~LyINSpG~~~--~~~~~G~v~~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG--~kgkR~a~Pns~i 155 (246)
.+...-||...+||||... .-|.-|-+..+-.+++.+.....|..++++|.++|.|.+.+++. ..+..++.|++++
T Consensus 346 a~~~~lPlV~lvDs~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvi~g~~~Gga~~am~~~~~~~d~~~a~p~a~~ 425 (512)
T TIGR01117 346 CDAFNIPIVTFVDVPGFLPGVNQEYGGIIRHGAKVLYAYSEATVPKVTIITRKAYGGAYLAMCSKHLGADQVYAWPTAEI 425 (512)
T ss_pred HHHcCCCEEEEEeCcCccccHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCchHHHHHhccccCCCCEEEEcCCCeE
Confidence 3445789999999999531 11212456667777778877889999999999999866555431 1256888899988
Q ss_pred eeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 156 MIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 156 MiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
.+-.|.+.. .+. +.+++.+..+. .+ .-.+++.+.. +.+.++..+.+.|+||.|+++.
T Consensus 426 ~v~~pe~a~-----~i~-~~~~l~~~~~~-----~~---~~~~~~~~~~--~~~~~~~~~a~~g~vD~VI~P~ 482 (512)
T TIGR01117 426 AVMGPAGAA-----NII-FRKDIKEAKDP-----AA---TRKQKIAEYR--EEFANPYKAAARGYVDDVIEPK 482 (512)
T ss_pred eecCHHHHH-----HHH-hhhhcccccCH-----HH---HHHHHHHHHH--HhhcCHHHHHhcCCCCeeEChH
Confidence 776665421 110 01111100000 00 0011222222 2366899999999999999876
No 113
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=96.96 E-value=0.0063 Score=55.93 Aligned_cols=99 Identities=19% Similarity=0.211 Sum_probs=74.4
Q ss_pred HHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCc---ccChHHHHHHHHHHHHHHHHHH
Q 025916 110 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRI---EGQATDVEIARKEMKNVKAELV 186 (246)
Q Consensus 110 ~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~---~G~a~di~i~a~el~~~~~~i~ 186 (246)
+.-++.+..++.||...+-|.|.+.|.-|.+.|+ =|++.|+|.|+.-++..|. .|-..-+.
T Consensus 117 ~~~~~~~~~~~KPvIaainG~AlgGG~ELalmCD--irva~~~Akfg~~~~~~Gi~p~~GGT~rl~-------------- 180 (290)
T KOG1680|consen 117 LRVWDLVSRLKKPVIAAINGFALGGGLELALMCD--IRVAGEGAKFGFFEIRMGIIPSWGGTQRLP-------------- 180 (290)
T ss_pred cchhhhhhhcccceeEeeeceeeccchhhhhhcc--eEeccCCCeecccccccCCccCCCchhhHH--------------
Confidence 5567778889999999999999999999999995 6999999999988776542 22222111
Q ss_pred HHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCCCC
Q 025916 187 KLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKS 230 (246)
Q Consensus 187 ~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~~~ 230 (246)
...|+ ..-.+.+-..+.++++||++.|||++|....+.
T Consensus 181 ----r~vG~--s~Ale~~ltg~~~~AqeA~~~GlVn~Vvp~~~~ 218 (290)
T KOG1680|consen 181 ----RIVGK--SRALEMILTGRRLGAQEAKKIGLVNKVVPSGDA 218 (290)
T ss_pred ----HHhCh--HHHHHHHHhcCcccHHHHHhCCceeEeecchhH
Confidence 12222 233445566889999999999999999987653
No 114
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=96.92 E-value=0.0012 Score=66.15 Aligned_cols=140 Identities=16% Similarity=0.111 Sum_probs=84.7
Q ss_pred hCCCCCEEEEEcCCCCCC--CCCCCchHHHHHHHHHHhcccCCCEEEEEecccchHHHHHHhcc--cCCcEEeccCceee
Q 025916 81 EDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAG--AKGNRAALPSSTIM 156 (246)
Q Consensus 81 ed~~k~I~LyINSpG~~~--~~~~~G~v~~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG--~kgkR~a~Pns~iM 156 (246)
+.-.=||...+|+||..- .-|.-|.+..+-.+..++.....|..|+++|.+++.|.+-+++. ..+..++.|++++-
T Consensus 398 ~~~~iPlv~l~D~pGf~~G~~~E~~G~~~~~a~l~~A~a~~~VP~isvi~g~a~G~g~~aM~g~~~~~d~~~awp~A~i~ 477 (569)
T PLN02820 398 AQRGIPLLFLQNITGFMVGSRSEASGIAKAGAKMVMAVACAKVPKITIIVGGSFGAGNYGMCGRAYSPNFLFMWPNARIG 477 (569)
T ss_pred HhcCCCEEEEEECCCCCCCHHHHHhhHHHHHHHHHHHHHhCCCCEEEEEECCcchHHHHHhcCcCCCCCEEEECCCCeEE
Confidence 344679999999999653 22334677778888888888999999999999999888777643 23456777888775
Q ss_pred eecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 157 IKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 157 iHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
.-.|.+. ..+- +.+++.+..+.-.+.-.+....-.+++.+..+ ...+|..|-+.|+||.||++.
T Consensus 478 vmg~e~a-----a~il-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~p~~aa~~~~vD~VIdP~ 541 (569)
T PLN02820 478 VMGGAQA-----AGVL-AQIERENKKRQGIQWSKEEEEAFKAKTVEAYE--REANPYYSTARLWDDGVIDPA 541 (569)
T ss_pred ecCHHHH-----HHHH-HHHHhhhhhhccccCCccHHHHHHHHHHHHHH--HhCCHHHHHHcCCcCcccCHH
Confidence 5444322 1111 12222221111000000000000122222233 366889999999999999876
No 115
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=96.91 E-value=0.0033 Score=62.81 Aligned_cols=101 Identities=13% Similarity=0.037 Sum_probs=64.6
Q ss_pred HHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccC--ceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHH
Q 025916 112 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPS--STIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLY 189 (246)
Q Consensus 112 Iyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pn--s~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iy 189 (246)
+.+.|..++.||...+-|.|.+.|..|.++++ .|++.++ ++|-+ |.....|-..+..... .+
T Consensus 115 l~~~l~~~pkPvIAAVnG~a~GGG~~LALacD--~rIas~~~~a~fg~--pEv~~~Gl~P~~gg~~------------rl 178 (550)
T PRK08184 115 IEDSSRHSGLKFIAAVNGTCAGGGYELALACD--EIVLVDDRSSAVSL--PEVPLLGVLPGTGGLT------------RV 178 (550)
T ss_pred HHHHHHhCCCCEEEEECCEeehHHHHHHHhCC--EEEEecCCCcEEEc--cchhccccCCCcchHH------------Hh
Confidence 45567778899999999999999999999994 7999887 55543 3322112111111000 01
Q ss_pred HHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 190 AKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 190 a~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
............+++-....|+++||+++||||+|.++.
T Consensus 179 ~~~~~vg~~~A~~llltG~~i~AeeA~~~GLVd~vv~~d 217 (550)
T PRK08184 179 TDKRKVRRDLADIFCTIEEGVRGKRAVDWRLVDEVVKPS 217 (550)
T ss_pred hhhhhcCHHHHHHHHHhCCcccHHHHHHcCCccEeeCHH
Confidence 111112233333444446789999999999999998654
No 116
>PRK08321 naphthoate synthase; Validated
Probab=96.90 E-value=0.0067 Score=55.86 Aligned_cols=97 Identities=13% Similarity=0.095 Sum_probs=66.0
Q ss_pred HHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEec-cCceeeeecCCcCcc-cChHHHHHHHHHHHHHHHHHHHHH
Q 025916 112 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAAL-PSSTIMIKQPIGRIE-GQATDVEIARKEMKNVKAELVKLY 189 (246)
Q Consensus 112 Iyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~-Pns~iMiHqp~~~~~-G~a~di~i~a~el~~~~~~i~~iy 189 (246)
+++.|..++.||.+.+-|.|.+.|.-|+++++ -|++. ++++|.+-....|.. +-..- ..+
T Consensus 127 ~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD--~ria~~~~a~f~~pe~~~Gl~p~~~~~----------------~~L 188 (302)
T PRK08321 127 VQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCD--LTLASREHARFKQTDADVGSFDGGYGS----------------AYL 188 (302)
T ss_pred HHHHHHcCCCCEEEEEcCeeehHHHHHHHhCC--EEEEecCCCEEECCccccccCCCchHH----------------HHH
Confidence 44567778899999999999999999999994 79998 688886533332211 11000 012
Q ss_pred HHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 190 AKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 190 a~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
.+..| ...-.+++-....|+|+||+++||||+|.+..
T Consensus 189 ~r~vG--~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~~ 225 (302)
T PRK08321 189 ARQVG--QKFAREIFFLGRTYSAEEAHDMGAVNAVVPHA 225 (302)
T ss_pred HHHhC--HHHHHHHHHcCCccCHHHHHHCCCceEeeCHH
Confidence 22223 22233444457899999999999999999754
No 117
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=96.85 E-value=0.0042 Score=55.65 Aligned_cols=96 Identities=16% Similarity=0.130 Sum_probs=61.5
Q ss_pred HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHH
Q 025916 111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYA 190 (246)
Q Consensus 111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya 190 (246)
.++..|..++.||.+.+-|.|.+.|.-++++++ .|++.++++|-+-....|.. .+..-. ..+. ++. .
T Consensus 92 ~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~Gl~---p~~g~~----~~l~-~l~--~- 158 (260)
T PRK07827 92 ALLRAIVELPKPVIAAIDGHVRAGGFGLVGACD--IVVAGPESTFALTEARIGVA---PAIISL----TLLP-RLS--P- 158 (260)
T ss_pred HHHHHHHhCCCCEEEEEcCeeecchhhHHHhCC--EEEEcCCCEEeCcccccCCC---CCcccc----hhHH-hhh--H-
Confidence 355667777899999999999999999999994 79999998876533332221 111000 0000 000 0
Q ss_pred HHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEcc
Q 025916 191 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLY 226 (246)
Q Consensus 191 ~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~ 226 (246)
....+++-....++|+||+++||||+|.+
T Consensus 159 -------~~a~~l~l~g~~~~a~eA~~~Glv~~v~~ 187 (260)
T PRK07827 159 -------RAAARYYLTGEKFGAAEAARIGLVTAAAD 187 (260)
T ss_pred -------HHHHHHHHhCCccCHHHHHHcCCcccchH
Confidence 01122222356789999999999999853
No 118
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=96.75 E-value=0.011 Score=56.35 Aligned_cols=95 Identities=16% Similarity=0.065 Sum_probs=62.8
Q ss_pred HHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025916 114 DVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHF 193 (246)
Q Consensus 114 d~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~T 193 (246)
..|..++.||.+.+-|.|.+.|.-|.+++ +.|++.++++|.+-....|.. .+..... .+-+. .
T Consensus 99 ~~i~~~~kPvIAaV~G~a~GgG~~Lalac--D~ria~~~a~f~~pe~~iGl~---p~~g~~~-~L~rl-----------~ 161 (379)
T PLN02874 99 YHIHTYKKTQVALVHGLVMGGGAGLMVPM--KFRVVTEKTVFATPEASVGFH---TDCGFSY-ILSRL-----------P 161 (379)
T ss_pred HHHHhCCCCEEEEecCeEEecHHHHHHhC--CeEEEeCCeEEeccccccCcC---CChhHHH-HHHhh-----------h
Confidence 35667789999999999999999999999 479999999876644443322 1111000 01111 0
Q ss_pred CCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 194 GKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 194 g~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
|. .-..++=.+..++++||+++||||+|+...
T Consensus 162 g~---~a~~l~ltG~~i~a~eA~~~GLv~~vv~~~ 193 (379)
T PLN02874 162 GH---LGEYLALTGARLNGKEMVACGLATHFVPSE 193 (379)
T ss_pred HH---HHHHHHHcCCcccHHHHHHcCCccEEeCHH
Confidence 10 001223336789999999999999998753
No 119
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=96.67 E-value=0.011 Score=60.62 Aligned_cols=99 Identities=19% Similarity=0.191 Sum_probs=67.8
Q ss_pred HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHH
Q 025916 111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYA 190 (246)
Q Consensus 111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya 190 (246)
.+++.|..++.||.+.+-|.|.+.|.-|.++| +.|++.++++|-+-....|.. .+..-. ..+.
T Consensus 93 ~~~~~i~~~~kPvIAav~G~a~GgG~~LAlac--D~ria~~~a~f~~pe~~lGl~---p~~g~~------------~~L~ 155 (715)
T PRK11730 93 SIFNRLEDLPVPTVAAINGYALGGGCECVLAT--DYRVASPDARIGLPETKLGIM---PGFGGT------------VRLP 155 (715)
T ss_pred HHHHHHHcCCCCEEEEECCEeehHHHHHHHhC--CEEEEcCCCEEeCchhhcCCC---CCchHH------------HHHH
Confidence 35667778889999999999999999999999 479999999886643333321 110000 0011
Q ss_pred HHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 191 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 191 ~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
+..| ...-.+++-....++|+||+++||||+|.+..
T Consensus 156 rlvG--~~~A~~llltG~~~~A~eA~~~GLv~~vv~~~ 191 (715)
T PRK11730 156 RLIG--ADNALEWIAAGKDVRAEDALKVGAVDAVVAPE 191 (715)
T ss_pred HhcC--HHHHHHHHHcCCcCCHHHHHHCCCCeEecCHH
Confidence 1122 22334445557789999999999999998654
No 120
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=96.56 E-value=0.017 Score=55.62 Aligned_cols=95 Identities=16% Similarity=0.106 Sum_probs=63.3
Q ss_pred HHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025916 114 DVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHF 193 (246)
Q Consensus 114 d~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~T 193 (246)
..|..++.||.+.+-|.|.+.|.-|.++| +.|++.++++|-+-....|.. .|..-.. .|-+ ..
T Consensus 127 ~~i~~~pkPvIA~v~G~a~GGG~~Lal~c--D~rvate~a~fa~PE~~iGl~---Pd~G~s~-~L~r-----------l~ 189 (401)
T PLN02157 127 YLLGTYLKPHVAILNGVTMGGGTGVSIPG--TFRVATDRTIFATPETIIGFH---PDAGASF-NLSH-----------LP 189 (401)
T ss_pred HHHHhCCCCEEEEEeCeEeehhHHHHHhC--CEEEEeCCCEEEChhhhcCCC---CCccHHH-HHHH-----------hh
Confidence 44677789999999999999999999999 479999998876544433322 1111000 0111 11
Q ss_pred CCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 194 GKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 194 g~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
|. .-..++=.+..|+++||+++||+|+++...
T Consensus 190 G~---~a~~L~LTG~~i~A~eA~~~GLv~~vVp~~ 221 (401)
T PLN02157 190 GR---LGEYLGLTGLKLSGAEMLACGLATHYIRSE 221 (401)
T ss_pred hH---HHHHHHHcCCcCCHHHHHHcCCceEEeCHh
Confidence 10 011222346889999999999999998765
No 121
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=96.52 E-value=0.012 Score=58.73 Aligned_cols=101 Identities=13% Similarity=0.044 Sum_probs=62.2
Q ss_pred HHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccC--ceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHH
Q 025916 112 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPS--STIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLY 189 (246)
Q Consensus 112 Iyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pn--s~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iy 189 (246)
+++.|+.++.||.+.+-|.|.+.|.-|.++|+ -|++.++ ++|-+ |.....|-..+..-.. . +
T Consensus 111 i~~~i~~~pkPvIAAVnG~a~GGG~~LALacD--~rvAs~~a~a~f~~--pEv~~lGl~P~~gg~~----~--------l 174 (546)
T TIGR03222 111 IEDSSRHSGLKFLAAVNGTCAGGGYELALACD--EIMLVDDRSSSVSL--PEVPLLGVLPGTGGLT----R--------V 174 (546)
T ss_pred HHHHHHhCCCCEEEEECCEeehHHHHHHHhCC--EEEEecCCCcEEEc--cchhccCcCCccchhh----h--------c
Confidence 55667778899999999999999999999994 7999886 45443 4332112111110000 0 0
Q ss_pred HHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 190 AKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 190 a~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
..........-.+++-...-|+++||+++||||+|.+..
T Consensus 175 ~~~~~vg~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~ 213 (546)
T TIGR03222 175 TDKRRVRRDHADIFCTIEEGVRGKRAKEWRLVDEVVKPS 213 (546)
T ss_pred cccchhCHHHHHHHHHcCCCccHHHHHHcCCceEEeChH
Confidence 000001122222333345679999999999999998643
No 122
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=96.52 E-value=0.015 Score=59.67 Aligned_cols=99 Identities=20% Similarity=0.173 Sum_probs=68.2
Q ss_pred HHHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCc-ccChHHHHHHHHHHHHHHHHHHH
Q 025916 109 AFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRI-EGQATDVEIARKEMKNVKAELVK 187 (246)
Q Consensus 109 g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~-~G~a~di~i~a~el~~~~~~i~~ 187 (246)
+..+++.|..++.||.+.+-|.|.+.|.-|.++| +.|++.++++|-+-....|. -|-..-. +
T Consensus 91 ~~~~~~~i~~~pkPvIAai~G~alGGGleLalac--D~ria~~~a~fglPEv~lGl~Pg~Ggt~--------r------- 153 (714)
T TIGR02437 91 ANSIFNKLEDLPVPTVAAINGIALGGGCECVLAT--DFRIADDTAKIGLPETKLGIMPGFGGTV--------R------- 153 (714)
T ss_pred HHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhC--CEEEEeCCCEEecchhhcCCCCCccHHH--------H-------
Confidence 3457788888899999999999999999999999 58999999988764433332 1111000 0
Q ss_pred HHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccC
Q 025916 188 LYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYT 227 (246)
Q Consensus 188 iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~ 227 (246)
+.+..|.. .-.+++-.+..++|+||+++||||+|...
T Consensus 154 -L~rliG~~--~A~~llltG~~~~A~eA~~~GLvd~vv~~ 190 (714)
T TIGR02437 154 -LPRVIGAD--NALEWIASGKENRAEDALKVGAVDAVVTA 190 (714)
T ss_pred -HHHHhCHH--HHHHHHHcCCcCCHHHHHHCCCCcEeeCh
Confidence 11111222 22334445678999999999999999864
No 123
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=96.50 E-value=0.011 Score=59.15 Aligned_cols=100 Identities=13% Similarity=0.111 Sum_probs=68.2
Q ss_pred HHHHhcccCCCEEEEE-ecccchHH-HHHHhcccCCcEEe-------ccCceeeeecCCcCcccChHHHHHHHHHHHHHH
Q 025916 112 IYDVMGYVKPPIFTLC-VGNAWGEA-ALLLGAGAKGNRAA-------LPSSTIMIKQPIGRIEGQATDVEIARKEMKNVK 182 (246)
Q Consensus 112 Iyd~m~~i~~~V~Ti~-~G~AaS~a-a~IlaaG~kgkR~a-------~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~ 182 (246)
++..|..++.||.+.+ -|.|.+.| .-|.++|+ -|++ .|+++|.+-....|..-...-.
T Consensus 357 ~~~~l~~~~kpviAav~~G~a~GgG~~eLalacD--~~ia~~~~~~~~~~a~f~~~e~~lGl~p~~gg~----------- 423 (546)
T TIGR03222 357 TLARLDVSSRSLFALIEPGSCFAGTLAELAFAAD--RSYMLAFPDNNDPEPAITLSELNFGLYPMVNGL----------- 423 (546)
T ss_pred HHHHHHcCCCCEEEEECCCeEeHHHHHHHHHhCc--eeeecCCCCCCCCCCEEeCCccccccCCCcCcH-----------
Confidence 6677888899999999 79999999 88888884 7999 7999987655544432111100
Q ss_pred HHHHHHHHHHh-CCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 183 AELVKLYAKHF-GKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 183 ~~i~~iya~~T-g~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
..+.+.. |.+...-.+++-....|+++||+++|||++|.+..
T Consensus 424 ----~~L~~~v~G~~~a~~~~~~ltg~~i~A~eA~~~Glv~~vv~~~ 466 (546)
T TIGR03222 424 ----SRLATRFYAEPAPVAAVRDKIGQALDAEEAERLGLVTAAPDDI 466 (546)
T ss_pred ----HHHHHHhcCchhHHHHHHHHhCCCCCHHHHHHcCCcccccCch
Confidence 1123333 43333222222346789999999999999997654
No 124
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=96.48 E-value=0.015 Score=59.66 Aligned_cols=98 Identities=15% Similarity=0.201 Sum_probs=67.2
Q ss_pred HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCC--cCc-ccChHHHHHHHHHHHHHHHHHHH
Q 025916 111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI--GRI-EGQATDVEIARKEMKNVKAELVK 187 (246)
Q Consensus 111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~--~~~-~G~a~di~i~a~el~~~~~~i~~ 187 (246)
.+++.|..++.||.+.+-|.|.+.|.-|.++| +.|++.+++...+-.|. .|. -|-.. ..
T Consensus 92 ~~~~~i~~~~kPvIAaV~G~a~GgG~~Lalac--D~ria~~~a~a~fg~pe~~lGl~p~~gg----------------~~ 153 (708)
T PRK11154 92 QLFAEIEALPIPVVAAIHGACLGGGLELALAC--HYRVCTDDPKTVLGLPEVQLGLLPGSGG----------------TQ 153 (708)
T ss_pred HHHHHHHhCCCCEEEEECCeeechHHHHHHhC--CEEEEeCCCCceEeCccccCCCCCCccH----------------Hh
Confidence 46778888999999999999999999999999 47999998633333443 332 11100 01
Q ss_pred HHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 188 LYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 188 iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
.+.+..|. ..-.+++-.+..++|+||+++||||+|....
T Consensus 154 ~L~r~vG~--~~A~~llltG~~i~a~eA~~~GLv~~vv~~~ 192 (708)
T PRK11154 154 RLPRLIGV--STALDMILTGKQLRAKQALKLGLVDDVVPHS 192 (708)
T ss_pred HHHhhcCH--HHHHHHHHhCCcCCHHHHHHCCCCcEecChH
Confidence 12222232 3334455557889999999999999998654
No 125
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=96.47 E-value=0.016 Score=59.32 Aligned_cols=99 Identities=15% Similarity=0.191 Sum_probs=66.6
Q ss_pred HHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCC--cCcc-cChHHHHHHHHHHHHHHHHHH
Q 025916 110 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI--GRIE-GQATDVEIARKEMKNVKAELV 186 (246)
Q Consensus 110 ~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~--~~~~-G~a~di~i~a~el~~~~~~i~ 186 (246)
..++..|..++.||.+.+-|.|.+.|.-|.+++ +.|++.+++...+..|. .|.. |-.. .
T Consensus 86 ~~~~~~l~~~~kPvIAaVnG~a~GgG~~LaLac--D~ria~~~~~a~fg~pev~lGl~p~~g~----------------~ 147 (699)
T TIGR02440 86 QVLFAELEALPIPVVAAIHGACLGGGLELALAC--HSRVCSDDDKTVLGLPEVQLGLLPGSGG----------------T 147 (699)
T ss_pred HHHHHHHHhCCCCEEEEECCEeecHHHHHHHhC--CEEEEcCCCCcEEechhhcccCCCCccH----------------H
Confidence 446778888899999999999999999999999 47999987433344443 2321 1100 0
Q ss_pred HHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 187 KLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 187 ~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
..+.+..| ...-.+++-.+..++++||+++||||+|.+..
T Consensus 148 ~~L~r~vG--~~~A~~llltG~~~~a~eA~~~GLV~~vv~~~ 187 (699)
T TIGR02440 148 QRLPRLIG--VSTALDMILTGKQLRAKQALKLGLVDDVVPQS 187 (699)
T ss_pred HHHHHhcC--HHHHHHHHHcCCcCCHHHHHhCCCCcEecChh
Confidence 01111222 22223444457889999999999999998654
No 126
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=96.47 E-value=0.005 Score=57.83 Aligned_cols=94 Identities=13% Similarity=0.107 Sum_probs=64.2
Q ss_pred HHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcc---cChHHHHHHHHHHHHHHHHHHHH
Q 025916 112 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE---GQATDVEIARKEMKNVKAELVKL 188 (246)
Q Consensus 112 Iyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~---G~a~di~i~a~el~~~~~~i~~i 188 (246)
++..|..++.||.+.+-|.|.+.|.-|.++++ -|++.++++|.+-....|.. |-..-+
T Consensus 92 ~~~~i~~~~kPvIAaVnG~a~GgG~~LalacD--~ria~~~a~f~~pe~~lGl~P~~g~~~~L----------------- 152 (342)
T PRK05617 92 LNALIARYPKPYIALMDGIVMGGGVGISAHGS--HRIVTERTKMAMPETGIGFFPDVGGTYFL----------------- 152 (342)
T ss_pred HHHHHHhCCCCEEEEEcCEEEccHhHHhhhCC--EEEEcCCCEeeCCccccCcCCCccceeEe-----------------
Confidence 45667788899999999999999999999994 79999999887644433321 111001
Q ss_pred HHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 189 YAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 189 ya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
.+..| ..-.+++=.+..++|+||+++||||+|.+..
T Consensus 153 -~r~~g---~~a~~llltG~~i~A~eA~~~GLv~~vv~~~ 188 (342)
T PRK05617 153 -SRAPG---ALGTYLALTGARISAADALYAGLADHFVPSA 188 (342)
T ss_pred -hhccc---HHHHHHHHcCCCCCHHHHHHcCCcceecCHH
Confidence 00000 0112222236779999999999999998754
No 127
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=96.36 E-value=0.023 Score=54.30 Aligned_cols=95 Identities=14% Similarity=0.063 Sum_probs=61.9
Q ss_pred HHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025916 114 DVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHF 193 (246)
Q Consensus 114 d~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~T 193 (246)
..|..++.||.+.+-|.|.+.|.-|.++| +.|++.++++|-+-....|.. .|..- .-.+-+.-.. ...|
T Consensus 99 ~~i~~~pKPvIa~v~G~a~GGG~~Lal~~--D~rvate~a~f~mPE~~iGl~---Pd~G~-s~~L~rl~G~-~~~~---- 167 (381)
T PLN02988 99 YVMATYSKAQVSILNGIVMGGGAGVSVHG--RFRIATENTVFAMPETALGLF---PDVGA-SYFLSRLPGF-FGEY---- 167 (381)
T ss_pred HHHHHCCCCEEEEecCeEeehhhHHhhcC--CeEEEcCCcEEeChhhhcCcC---CCccH-HHHHHHHHHH-HHHH----
Confidence 35667889999999999999999999998 479999998875433333321 11110 0001111111 0111
Q ss_pred CCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 194 GKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 194 g~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
++=-+..++++||++.||+|+++...
T Consensus 168 ---------l~LTG~~i~a~eA~~~GLv~~vv~~~ 193 (381)
T PLN02988 168 ---------VGLTGARLDGAEMLACGLATHFVPST 193 (381)
T ss_pred ---------HHHcCCCCCHHHHHHcCCceEecCHh
Confidence 22235789999999999999998754
No 128
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=96.28 E-value=0.0032 Score=61.94 Aligned_cols=134 Identities=20% Similarity=0.258 Sum_probs=77.2
Q ss_pred CCCCEEEEEcCCCCCC--CCCCCchHHHHHHHHHHhcccCCCEEEEEecccchHHHHHHhccc--CCcEEeccCceeeee
Q 025916 83 VEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGA--KGNRAALPSSTIMIK 158 (246)
Q Consensus 83 ~~k~I~LyINSpG~~~--~~~~~G~v~~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~--kgkR~a~Pns~iMiH 158 (246)
-.=||...+|+||... .-|.-|-+..+-.+.+++...+.|+.|+++|.++|.|.+.+++.. .+..++.|++++-+-
T Consensus 328 ~~iPlv~l~dtpGf~~g~~~E~~g~~~~ga~~~~a~~~~~vP~itvi~~~~~Gga~~am~~~~~~~~~~~Awp~a~~~vm 407 (493)
T PF01039_consen 328 FNIPLVTLVDTPGFMPGPEAERAGIIRAGARLLYALAEATVPKITVIVRKAYGGAYYAMCGRGYGPDFVFAWPTAEIGVM 407 (493)
T ss_dssp TT--EEEEEEECEB--SHHHHHTTHHHHHHHHHHHHHHH-S-EEEEEEEEEEHHHHHHTTGGGGTTSEEEEETT-EEESS
T ss_pred hCCceEEEeecccccccchhhhcchHHHHHHHHHHHHcCCCCEEEEEeCCccCcchhhhcccccchhhhhhhhcceeeec
Confidence 3569999999999653 112236677889999999999999999999999998776666642 235788888888766
Q ss_pred cCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 159 QPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 159 qp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
.|.+... +. +.+++....+.=.+.-+. ..+.+.+.. +...++..|.+.|++|.|+++.
T Consensus 408 ~~e~a~~-----i~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~--~~~~~~~~~a~~~~~D~ii~p~ 465 (493)
T PF01039_consen 408 GPEGAAS-----IL-YRDELEAAEAEGADPEAQ----RAEKIAEYE--DELSSPYRAASRGYVDDIIDPA 465 (493)
T ss_dssp -HHHHHH-----HH-THHHHHHSCHCCHSHHHH----HHHHHHHHH--HHHSSHHHHHHTTSSSEESSGG
T ss_pred Chhhhhe-----ee-ehhhhhhhhcccchhHHH----HHHHHHHHH--HhcCCHHHHHhcCCCCCccCHH
Confidence 5554311 10 011111110000000000 111122211 2346799999999999999875
No 129
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=96.09 E-value=0.033 Score=53.78 Aligned_cols=95 Identities=13% Similarity=0.076 Sum_probs=62.4
Q ss_pred HhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 025916 115 VMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFG 194 (246)
Q Consensus 115 ~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg 194 (246)
.|...+.||.+.+-|.|.+.|.-|.++| +.|++.++++|-+-....|.. .|+.-. -.+-++-... ..|
T Consensus 133 ~i~~~pKPvIA~v~G~amGGG~gLal~~--D~rVate~a~famPE~~iGl~---PdvG~s-~~L~rl~g~~-g~~----- 200 (407)
T PLN02851 133 LQGTYLKPNVAIMDGITMGCGAGISIPG--MFRVVTDKTVFAHPEVQMGFH---PDAGAS-YYLSRLPGYL-GEY----- 200 (407)
T ss_pred HHHhCCCCEEEEEcCEEeeHHHHHHHhC--CEEEEeCCceEecchhccCCC---CCccHH-HHHHHhcCHH-HHH-----
Confidence 4556789999999999999999999998 478998888876644443332 111100 0011111111 111
Q ss_pred CCHHHHHHHhcCCCccCHHHHHHcCCceEEccCCC
Q 025916 195 KTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEK 229 (246)
Q Consensus 195 ~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~~ 229 (246)
++=.+..|+++||+++||+|+++...+
T Consensus 201 --------L~LTG~~i~a~eA~~~GLa~~~v~~~~ 227 (407)
T PLN02851 201 --------LALTGQKLNGVEMIACGLATHYCLNAR 227 (407)
T ss_pred --------HHHhCCcCCHHHHHHCCCceeecCHhh
Confidence 222367899999999999999987653
No 130
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=96.08 E-value=0.028 Score=58.00 Aligned_cols=97 Identities=19% Similarity=0.202 Sum_probs=66.2
Q ss_pred HHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCC--cCc-ccC-hHHHHHHHHHHHHHHHHH
Q 025916 110 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI--GRI-EGQ-ATDVEIARKEMKNVKAEL 185 (246)
Q Consensus 110 ~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~--~~~-~G~-a~di~i~a~el~~~~~~i 185 (246)
..+++.|..++.||...+-|.|.+.|.-|.++| +.|++.+++...+-.|. .|. -|- ..
T Consensus 98 ~~l~~~i~~~~kPvIAav~G~a~GgG~eLALac--D~ria~~~a~a~fglpEv~lGl~Pg~Ggt---------------- 159 (737)
T TIGR02441 98 QEMFERIEKSQKPIVAAISGSCLGGGLELALAC--HYRIATKDRKTLLGLPEVMLGLLPGAGGT---------------- 159 (737)
T ss_pred HHHHHHHHhCCCCEEEEECCEeecHHHHHHHhC--CEEEEcCCCCCeEecchhhhCCCCCccHh----------------
Confidence 457778888899999999999999999999999 48999998643333343 222 110 11
Q ss_pred HHHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccC
Q 025916 186 VKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYT 227 (246)
Q Consensus 186 ~~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~ 227 (246)
..+.+..|. ..-.+++-.+..++++||+++||||+|.+.
T Consensus 160 -~rLprliG~--~~A~~l~ltG~~i~a~eA~~~GLVd~vv~~ 198 (737)
T TIGR02441 160 -QRLPKLTGV--PAALDMMLTGKKIRADRAKKMGIVDQLVDP 198 (737)
T ss_pred -hhHHHhhCH--HHHHHHHHcCCcCCHHHHHHCCCCeEecCC
Confidence 011122222 222334445788999999999999999975
No 131
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=96.07 E-value=0.036 Score=49.86 Aligned_cols=125 Identities=18% Similarity=0.180 Sum_probs=85.2
Q ss_pred chhHHHHHHhhCCCCCEEEEEcCCCCCCCCCCCchHHHHHHHH----------HHhcccCCCEEEEEecccchHHHHHHh
Q 025916 71 KPRSPVITMYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIY----------DVMGYVKPPIFTLCVGNAWGEAALLLG 140 (246)
Q Consensus 71 ~a~~iiaqL~ed~~k~I~LyINSpG~~~~~~~~G~v~~g~aIy----------d~m~~i~~~V~Ti~~G~AaS~aa~Ila 140 (246)
.+..+...+.+.++.||.+.|++||..+ |.-.+.+.|+ +.-+.-..||.++++|.|.|. +||..
T Consensus 51 lA~~V~~~i~~~~krpIv~lVD~~sQa~-----grreEllGi~~alAhla~a~a~AR~~GHpvI~Lv~G~A~SG-aFLA~ 124 (234)
T PF06833_consen 51 LAKAVLDTIRSGPKRPIVALVDVPSQAY-----GRREELLGINQALAHLAKAYALARLAGHPVIGLVYGKAMSG-AFLAH 124 (234)
T ss_pred HHHHHHHHHhcCCCCCEEEEEeCCcccc-----chHHHHhhHHHHHHHHHHHHHHHHHcCCCeEEEEecccccH-HHHHH
Confidence 4555555556678899999999999553 5555555444 444555689999999999995 55654
Q ss_pred cccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCc--cCHHHHHHc
Q 025916 141 AGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKY--FSPSEAVEY 218 (246)
Q Consensus 141 aG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~~~~~rd~~--~sa~EAley 218 (246)
+---+.-+++| -.|+|-..- .-.++.|.+|.|+++++.+.--. ...+-=...
T Consensus 125 GlqA~rl~AL~--ga~i~vM~~------------------------~s~ARVTk~~ve~Le~la~s~PvfA~gi~ny~~l 178 (234)
T PF06833_consen 125 GLQANRLIALP--GAMIHVMGK------------------------PSAARVTKRPVEELEELAKSVPVFAPGIENYAKL 178 (234)
T ss_pred HHHhcchhcCC--CCeeecCCh------------------------HHhHHHhhcCHHHHHHHhhcCCCcCCCHHHHHHh
Confidence 43335668888 455554331 22466788888888888765433 344666788
Q ss_pred CCceEEccC
Q 025916 219 GIIDKVLYT 227 (246)
Q Consensus 219 GLID~Ii~~ 227 (246)
|.++++++.
T Consensus 179 G~l~~l~~~ 187 (234)
T PF06833_consen 179 GALDELWDG 187 (234)
T ss_pred ccHHHHhcc
Confidence 888888874
No 132
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=95.53 E-value=0.035 Score=55.54 Aligned_cols=97 Identities=14% Similarity=0.180 Sum_probs=63.6
Q ss_pred HHHHhcccCCCEEEEEe-cccchHH-HHHHhcccCCcEEec-------cCceeeeecCCcCcc---cChHHHHHHHHHHH
Q 025916 112 IYDVMGYVKPPIFTLCV-GNAWGEA-ALLLGAGAKGNRAAL-------PSSTIMIKQPIGRIE---GQATDVEIARKEMK 179 (246)
Q Consensus 112 Iyd~m~~i~~~V~Ti~~-G~AaS~a-a~IlaaG~kgkR~a~-------Pns~iMiHqp~~~~~---G~a~di~i~a~el~ 179 (246)
++..|...+.||.+.+- |.|.+.| .-|.++| +.|++. |+++|.+-....|.. |-..-
T Consensus 361 ~~~~l~~~~kPvIAaV~~G~a~GgG~~eLalac--D~~ia~~~~~~~~~~a~f~~pe~~~Gl~p~~gg~~~--------- 429 (550)
T PRK08184 361 TLKRLDVTSRSLFALIEPGSCFAGTLAELALAA--DRSYMLALPDDNDPAPAITLSALNFGLYPMVNGLSR--------- 429 (550)
T ss_pred HHHHHHhCCCCEEEEECCCceehhHHHHHHHHC--ChhhhcCCCCCCCCCCEEECccccccCCCCCCcHHH---------
Confidence 45567777899999996 9999999 8888888 479999 889887655444432 11111
Q ss_pred HHHHHHHHHHHHH-hCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 180 NVKAELVKLYAKH-FGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 180 ~~~~~i~~iya~~-Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
+.++ .|.+...-..++-....++++||+++||||+|.+..
T Consensus 430 ---------L~r~~vG~~~A~~~~l~~tg~~i~A~eA~~~GLv~~vv~~~ 470 (550)
T PRK08184 430 ---------LARRFYGEPDPLAAVRAKIGQPLDADAAEELGLVTAAPDDI 470 (550)
T ss_pred ---------hHHHhcChHHHHHHHHHHhCCcCCHHHHHHcCCcccccChH
Confidence 1111 122211111111236789999999999999998754
No 133
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=94.41 E-value=0.26 Score=45.65 Aligned_cols=106 Identities=14% Similarity=0.150 Sum_probs=67.1
Q ss_pred hhCCCCCEEEEEcCCCCCCCCCCCchHHHHHH-------HHHH---hcccCCCEEEEEecccchHHHHHHhcccCCcEEe
Q 025916 80 YEDVEKPIYLYINSTGTTKGGEKLGYETEAFA-------IYDV---MGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAA 149 (246)
Q Consensus 80 ~ed~~k~I~LyINSpG~~~~~~~~G~v~~g~a-------Iyd~---m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a 149 (246)
.....-|+.....|+| ....+|.. ++.. +.....|..+++.|-+++.++..++... +-.++
T Consensus 152 A~~~~lPlV~l~dsgG--------armqEgi~sL~~~ak~~~a~~~~~~a~vP~IsVv~gpt~GG~aas~a~~~-D~iia 222 (292)
T PRK05654 152 AIEEKCPLVIFSASGG--------ARMQEGLLSLMQMAKTSAALKRLSEAGLPYISVLTDPTTGGVSASFAMLG-DIIIA 222 (292)
T ss_pred HHHcCCCEEEEEcCCC--------cchhhhhhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCCchHHHHHHHHcC-CEEEE
Confidence 3344678999999999 44333321 2222 2333579999999999998887776632 46788
Q ss_pred ccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 150 LPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 150 ~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
-|++.+.+--|. - ..+-++ +++.+ -+-+++-+.+.|+||.|+++.
T Consensus 223 ~p~A~ig~aGpr--------v------------------ie~~~~---e~lpe-----~~~~ae~~~~~G~vD~Vv~~~ 267 (292)
T PRK05654 223 EPKALIGFAGPR--------V------------------IEQTVR---EKLPE-----GFQRAEFLLEHGAIDMIVHRR 267 (292)
T ss_pred ecCcEEEecCHH--------H------------------HHhhhh---hhhhh-----hhcCHHHHHhCCCCcEEECHH
Confidence 898888765541 0 011111 12211 244677788999999999776
No 134
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=93.94 E-value=0.3 Score=45.16 Aligned_cols=112 Identities=15% Similarity=0.150 Sum_probs=69.7
Q ss_pred hhCCCCCEEEEEcCCCCCCCCCCCchHHHHHHHHH---HhcccCCCEEEEEecccchHHHHHHh-cccCCcEEeccCcee
Q 025916 80 YEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYD---VMGYVKPPIFTLCVGNAWGEAALLLG-AGAKGNRAALPSSTI 155 (246)
Q Consensus 80 ~ed~~k~I~LyINSpG~~~~~~~~G~v~~g~aIyd---~m~~i~~~V~Ti~~G~AaS~aa~Ila-aG~kgkR~a~Pns~i 155 (246)
.....-|+....+|+|..- -|-.++....-.+.. .+..-..|..+++.|-+++.++..++ .| +-.++.|++.+
T Consensus 151 A~~~~lPlV~l~dSgGaRm-qEg~~sL~~~ak~~~~~~~~~~~~vP~IsVv~gpt~GG~aas~a~~~--D~iia~p~A~i 227 (285)
T TIGR00515 151 ALEDNCPLIIFSASGGARM-QEALLSLMQMAKTSAALAKMSERGLPYISVLTDPTTGGVSASFAMLG--DLNIAEPKALI 227 (285)
T ss_pred HHHcCCCEEEEEcCCCccc-ccchhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhCC--CEEEEECCeEE
Confidence 4455679999999999432 111122222112222 23333579999999999998877775 55 46788899888
Q ss_pred eeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 156 MIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 156 MiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
.+--|. ++.+-+|. .+. +-+-+|+-+.+.|+||.|+++.
T Consensus 228 g~aGpr--------------------------Vie~ti~e-------~lp-e~~q~ae~~~~~G~vD~iv~~~ 266 (285)
T TIGR00515 228 GFAGPR--------------------------VIEQTVRE-------KLP-EGFQTSEFLLEHGAIDMIVHRP 266 (285)
T ss_pred EcCCHH--------------------------HHHHHhcC-------ccc-hhcCCHHHHHhCCCCcEEECcH
Confidence 764442 11122221 122 3366788889999999999776
No 135
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=93.74 E-value=0.14 Score=51.11 Aligned_cols=139 Identities=21% Similarity=0.310 Sum_probs=79.7
Q ss_pred HHhhCCCCCEEEEEcCCCCCC--CCCCCchHHHHHHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcE--EeccCc
Q 025916 78 TMYEDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNR--AALPSS 153 (246)
Q Consensus 78 qL~ed~~k~I~LyINSpG~~~--~~~~~G~v~~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR--~a~Pns 153 (246)
+|.+--.=||.+..|.||++- .-|.-|-+--|--+.+++-..+.|..|+.+|.+++.|.+.+++..-+-+ |+-|++
T Consensus 353 ~~cd~~~iPlv~L~d~pGFm~G~~~E~~giik~Gakl~~A~aeatVPkitvI~rkayGga~~~M~~~~~~~~~~~AwP~a 432 (526)
T COG4799 353 RLCDAFNIPLVFLVDTPGFMPGTDQEYGGIIKHGAKLLYAVAEATVPKITVITRKAYGGAYYVMGGKALGPDFNYAWPTA 432 (526)
T ss_pred HhhhccCCCeEEEeCCCCCCCChhHHhChHHHhhhHHHhhHhhccCCeEEEEecccccceeeeecCccCCCceeEecCcc
Confidence 444444679999999999773 2233355677888899999999999999999999988766666443322 223445
Q ss_pred eeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 154 TIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 154 ~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
++-.-.|. ++-.+ .+.+++....+. .+..-.-.+.+.+..+ +.+-.|--|-+.|+||.|+++.
T Consensus 433 ~iaVMG~e-----gAv~i-~~~k~l~~~~~~-----~~~~~~~~~~~~~eY~-~~~~~p~~aa~r~~iD~vI~p~ 495 (526)
T COG4799 433 EIAVMGPE-----GAVSI-LYRKELAAAERP-----EEREALLRKQLIAEYE-EQFSNPYYAAERGYIDAVIDPA 495 (526)
T ss_pred eeeecCHH-----HHHHH-HHHHHhhcccCc-----hhHHHHHHHHHHHHHH-HhccchHHHHHhCCCCcccCHH
Confidence 44332222 12221 122333333222 0000000011111111 2344566678899999999875
No 136
>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=92.10 E-value=0.066 Score=48.49 Aligned_cols=102 Identities=17% Similarity=0.240 Sum_probs=70.7
Q ss_pred HHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHH
Q 025916 110 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLY 189 (246)
Q Consensus 110 ~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iy 189 (246)
..-|..|...+.||.+-+=|-|.++|.=|..|++ -||+...+.|-+...-.|. +.|+. -|+++-+.+
T Consensus 116 Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcD--IRycsqDAffsvkEVDvgl---aADvG----TL~RlpkvV---- 182 (292)
T KOG1681|consen 116 QDTFTAIERCPKPVIAAVHGACIGAGVDLITACD--IRYCSQDAFFSVKEVDVGL---AADVG----TLNRLPKVV---- 182 (292)
T ss_pred HHHHHHHHhCChhHHHHHHhhhccccccceeecc--eeeecccceeeeeeeeeeh---hhchh----hHhhhhHHh----
Confidence 4456667777889988888889999998999995 6999999999887765543 33332 133332211
Q ss_pred HHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCCC
Q 025916 190 AKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEK 229 (246)
Q Consensus 190 a~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~~ 229 (246)
| ....+.++.-..+-|+|.||+++|||-+|.+.+.
T Consensus 183 ----G-n~s~~~elafTar~f~a~EAl~~GLvSrvf~dk~ 217 (292)
T KOG1681|consen 183 ----G-NQSLARELAFTARKFSADEALDSGLVSRVFPDKE 217 (292)
T ss_pred ----c-chHHHHHHHhhhhhcchhhhhhcCcchhhcCCHH
Confidence 2 1223344444457799999999999999987653
No 137
>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=91.05 E-value=0.15 Score=45.61 Aligned_cols=98 Identities=16% Similarity=0.152 Sum_probs=67.3
Q ss_pred HHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHH
Q 025916 112 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAK 191 (246)
Q Consensus 112 Iyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~ 191 (246)
+.+-|+.++.||..-+-|.|+.+|+-+.++++ ...+..+|.|..--.-.|..-....+. +.+.--+=+..|.-
T Consensus 117 vmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD--~vVa~k~SkF~tPG~~vGlFCSTPGvA-----laRavpRkva~~ML 189 (287)
T KOG1682|consen 117 VMNDIRNLPVPVIAKVNGYAAAAGCQLVASCD--MVVATKNSKFSTPGAGVGLFCSTPGVA-----LARAVPRKVAAYML 189 (287)
T ss_pred HHHHHhcCCCceEEEecchhhhccceEEEeee--EEEEecCccccCCCCceeeEecCcchh-----HhhhcchhHHHHHH
Confidence 44556777889999999999999999999985 577888888754322223222233332 22222233455666
Q ss_pred HhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCCC
Q 025916 192 HFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEK 229 (246)
Q Consensus 192 ~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~~ 229 (246)
.||+| .+++||+--||+.+|++...
T Consensus 190 ~Tg~P-------------i~~eeAl~sGlvskvVp~~e 214 (287)
T KOG1682|consen 190 MTGLP-------------ITGEEALISGLVSKVVPAEE 214 (287)
T ss_pred HhCCC-------------CchHHHHHhhhhhhcCCHHH
Confidence 67766 58999999999999987654
No 138
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=84.12 E-value=3.1 Score=38.31 Aligned_cols=67 Identities=15% Similarity=0.209 Sum_probs=48.2
Q ss_pred CCEEEEEcCCCCCCCCCCCchHHHHH-------HHHHHhcccC--CCEEEEEecc--cchHHHHHHhcccCCcEEeccCc
Q 025916 85 KPIYLYINSTGTTKGGEKLGYETEAF-------AIYDVMGYVK--PPIFTLCVGN--AWGEAALLLGAGAKGNRAALPSS 153 (246)
Q Consensus 85 k~I~LyINSpG~~~~~~~~G~v~~g~-------aIyd~m~~i~--~~V~Ti~~G~--AaS~aa~IlaaG~kgkR~a~Pns 153 (246)
-|+.+.+.|.| +...++. .|+..+...+ .|+.+++.|- |++.++++.+.+ +..++.|++
T Consensus 100 ~PvV~l~dSgG--------aRlqEg~~~L~~~a~i~~~~~~ls~~vP~Isvv~Gp~gc~GG~a~~a~l~--D~vim~~~a 169 (274)
T TIGR03133 100 TAVVLLLDTGG--------VRLQEANAGLIAIAEIMRAILDARAAVPVIGVIGGRVGCFGGMGIAAGLC--SYLIMTEEG 169 (274)
T ss_pred CCEEEEEcCCC--------cChhhhHHHHHHHHHHHHHHHHHhCCCCEEEEEeCCCCcchHHHHHHhcC--CEEEEeCCc
Confidence 48999999999 4443332 2332322333 6999999999 788888777777 478888999
Q ss_pred eeeeecCC
Q 025916 154 TIMIKQPI 161 (246)
Q Consensus 154 ~iMiHqp~ 161 (246)
++.+--|.
T Consensus 170 ~i~~aGP~ 177 (274)
T TIGR03133 170 RLGLSGPE 177 (274)
T ss_pred EEeccCHH
Confidence 88887663
No 139
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=83.57 E-value=2.7 Score=39.26 Aligned_cols=73 Identities=12% Similarity=0.197 Sum_probs=49.4
Q ss_pred CCEEEEEcCCCCCC-CCCCCchHHHHHHHHHHhcccC--CCEEEEEecc--cchHHHHHHhcccCCcEEeccCceeeeec
Q 025916 85 KPIYLYINSTGTTK-GGEKLGYETEAFAIYDVMGYVK--PPIFTLCVGN--AWGEAALLLGAGAKGNRAALPSSTIMIKQ 159 (246)
Q Consensus 85 k~I~LyINSpG~~~-~~~~~G~v~~g~aIyd~m~~i~--~~V~Ti~~G~--AaS~aa~IlaaG~kgkR~a~Pns~iMiHq 159 (246)
-|+.+.+.|.|..- .+.. | ......|+..+..++ .|+.+++.|- |++.+++..+.+ +..++.|++++.+--
T Consensus 109 ~PvV~l~dSGGaRlqEg~~-~-L~~~a~i~~~~~~ls~~VP~I~vv~G~~gc~GG~a~~a~l~--D~iIm~~~a~iglaG 184 (301)
T PRK07189 109 TAVLLLFETGGVRLQEANA-G-LAAIAEIMRAIVDLRAAVPVIGLIGGRVGCFGGMGIAAALC--SYLIVSEEGRLGLSG 184 (301)
T ss_pred CCEEEEecCCCcCccchHH-H-HHHHHHHHHHHHHHhCCCCEEEEEcCCCCCcHHHHHHHhcC--CEEEEECCcEEeccC
Confidence 79999999999331 1110 1 111123343333333 7999999999 888888887777 578889999988876
Q ss_pred CC
Q 025916 160 PI 161 (246)
Q Consensus 160 p~ 161 (246)
|.
T Consensus 185 P~ 186 (301)
T PRK07189 185 PE 186 (301)
T ss_pred HH
Confidence 63
No 140
>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]
Probab=76.66 E-value=4.6 Score=37.06 Aligned_cols=97 Identities=18% Similarity=0.200 Sum_probs=59.6
Q ss_pred HHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHH
Q 025916 112 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAK 191 (246)
Q Consensus 112 Iyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~ 191 (246)
..++.-..+.|+.+.+-|=|-+.|+.|+.-++ -.++.. ...+|.|.... ||..|--... .+-+
T Consensus 99 ~v~~fi~f~Kplia~vNGPAIGlgasil~lcD--~V~A~D--ka~F~TPfa~l-Gq~PEG~Ss~------------t~p~ 161 (266)
T KOG0016|consen 99 FVNTFINFPKPLVALVNGPAIGLGASILPLCD--YVWASD--KAWFQTPFAKL-GQSPEGCSSV------------TLPK 161 (266)
T ss_pred HHHHHhcCCCCEEEEecCCccchhhHHhhhhh--eEEecc--ceEEeccchhc-CCCCCcceee------------eehH
Confidence 56777778899999999999999999999985 466665 44457776321 2211100000 0000
Q ss_pred HhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccC
Q 025916 192 HFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYT 227 (246)
Q Consensus 192 ~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~ 227 (246)
.. ..+.-.+++=-..-|+|+||.++|||++|...
T Consensus 162 im--G~~~A~E~ll~~~kltA~Ea~~~glVskif~~ 195 (266)
T KOG0016|consen 162 IM--GSASANEMLLFGEKLTAQEACEKGLVSKIFPA 195 (266)
T ss_pred hh--chhhHHHHHHhCCcccHHHHHhcCchhhhcCh
Confidence 00 11111122222466899999999999999865
No 141
>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=71.95 E-value=4.3 Score=36.77 Aligned_cols=115 Identities=16% Similarity=0.183 Sum_probs=75.0
Q ss_pred HHHHHHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcC----cccChHHHHHHHHHHHHH
Q 025916 106 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR----IEGQATDVEIARKEMKNV 181 (246)
Q Consensus 106 v~~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~----~~G~a~di~i~a~el~~~ 181 (246)
|..-..+++.+..++.||..-+.|.|-+.|-=+..+|+ -|.+..++.+-+-..... ..|. . ++
T Consensus 110 V~~lR~~~~dIe~Lp~P~IAAidG~ALGGGLElALACD--iRva~s~akmGLvET~laiiPGaGGt-Q----------RL 176 (291)
T KOG1679|consen 110 VNGLRGLFNDIERLPQPVIAAIDGAALGGGLELALACD--IRVAASSAKMGLVETKLAIIPGAGGT-Q----------RL 176 (291)
T ss_pred HHHHHHHHHHHHhCCccceehhcchhcccchhhhhhcc--ceehhhhccccccccceeeecCCCcc-c----------hh
Confidence 44456778888888999999999999999999999995 589888887765443321 2221 1 11
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCCCCCCCcchhhHhhhhc
Q 025916 182 KAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKSPEDHGVVSDLKKAQ 244 (246)
Q Consensus 182 ~~~i~~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~~~~~~~~~~~~~~~~~ 244 (246)
- .++ ....-++++-..+.|++.||...|||.++++.... .|..+..-|+-||
T Consensus 177 p----R~v------g~alaKELIftarvl~g~eA~~lGlVnhvv~qnee-gdaa~~kal~lA~ 228 (291)
T KOG1679|consen 177 P----RIV------GVALAKELIFTARVLNGAEAAKLGLVNHVVEQNEE-GDAAYQKALELAR 228 (291)
T ss_pred H----HHH------hHHHHHhHhhhheeccchhHHhcchHHHHHhcCcc-ccHHHHHHHHHHH
Confidence 1 111 11122334455788999999999999999876522 2333444444443
No 142
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=66.52 E-value=8.5 Score=34.95 Aligned_cols=97 Identities=15% Similarity=0.215 Sum_probs=62.4
Q ss_pred HHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcc--c-ChHHHHHHHHHHHHHHHHHH
Q 025916 110 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE--G-QATDVEIARKEMKNVKAELV 186 (246)
Q Consensus 110 ~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~--G-~a~di~i~a~el~~~~~~i~ 186 (246)
+.+--.|+.++.||.+.+-|.|.+.|=++=.-|+ --.+..|+.|-=--|..++. | -+.-+
T Consensus 106 LdlQrlIR~~PKpViA~V~G~AiGGGhvlhvvCD--LTiAa~nA~FgQTgp~VGSFD~G~Gs~yl--------------- 168 (282)
T COG0447 106 LDLQRLIRTMPKPVIAMVAGYAIGGGHVLHVVCD--LTIAADNAIFGQTGPKVGSFDGGYGSSYL--------------- 168 (282)
T ss_pred hhHHHHHHhCCcceEEEEeeEeccCccEEEEEee--eeeehhcchhcCCCCCcccccCcccHHHH---------------
Confidence 3444467778899999999999998887766664 34777888887666664432 2 12222
Q ss_pred HHHHHHhCCCH-HHHHHHhcCCCccCHHHHHHcCCceEEccCCC
Q 025916 187 KLYAKHFGKTP-EQIEADIRRPKYFSPSEAVEYGIIDKVLYTEK 229 (246)
Q Consensus 187 ~iya~~Tg~~~-e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~~ 229 (246)
++..|+.. .+|.=+ -+-.+|+||++.|+|..|....+
T Consensus 169 ---ar~VGqKkArEIwfL---cR~Y~A~eal~MGlVN~Vvp~~~ 206 (282)
T COG0447 169 ---ARIVGQKKAREIWFL---CRQYDAEEALDMGLVNTVVPHAD 206 (282)
T ss_pred ---HHHhhhhhhHHhhhh---hhhccHHHHHhcCceeeeccHHH
Confidence 22222211 112111 24578999999999999987653
No 143
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=51.70 E-value=24 Score=25.36 Aligned_cols=34 Identities=26% Similarity=0.317 Sum_probs=27.3
Q ss_pred HHHHHHHHHhCC-CHHHHHHHhcCCCccCHHHHHHc
Q 025916 184 ELVKLYAKHFGK-TPEQIEADIRRPKYFSPSEAVEY 218 (246)
Q Consensus 184 ~i~~iya~~Tg~-~~e~I~~~~~rd~~~sa~EAley 218 (246)
.+++-+.+.+|. |.++|...+. +..|+|.||++-
T Consensus 7 k~VQ~iKEiv~~hse~eIya~L~-ecnMDpnea~qr 41 (60)
T PF06972_consen 7 KTVQSIKEIVGCHSEEEIYAMLK-ECNMDPNEAVQR 41 (60)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHH-HhCCCHHHHHHH
Confidence 455666777777 9999998887 799999999874
No 144
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=48.83 E-value=78 Score=32.18 Aligned_cols=79 Identities=15% Similarity=0.179 Sum_probs=50.3
Q ss_pred hhCCCCCEEEEEcCCCCCC-CC-CCCchHHHHHHHHHH-hcc--cCCCEEEEEecccchHHHHHHhcccCCcEEec-cCc
Q 025916 80 YEDVEKPIYLYINSTGTTK-GG-EKLGYETEAFAIYDV-MGY--VKPPIFTLCVGNAWGEAALLLGAGAKGNRAAL-PSS 153 (246)
Q Consensus 80 ~ed~~k~I~LyINSpG~~~-~~-~~~G~v~~g~aIyd~-m~~--i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~-Pns 153 (246)
.....-||...++|+|..- .. |.++.....-.|+.. .+. ...|..++++|.|++.++++.+.++ ..++. |++
T Consensus 160 A~~~~lPlV~l~DSgGarl~~q~e~~~~~~~~g~if~~~~~ls~~~VP~Isvv~G~~~gGgAy~~a~~D--~vim~~~~a 237 (569)
T PLN02820 160 AAQCRLPCIYLVDSGGANLPRQAEVFPDRDHFGRIFYNQARMSSAGIPQIALVLGSCTAGGAYVPAMAD--ESVIVKGNG 237 (569)
T ss_pred HHHcCCCEEEEEeCCCcCCcccccccchHhHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHHHHHHhCC--ceEEecCCc
Confidence 4445679999999999442 11 222111111234433 332 3469999999999999999887774 55665 678
Q ss_pred eeeeecC
Q 025916 154 TIMIKQP 160 (246)
Q Consensus 154 ~iMiHqp 160 (246)
.+.+--|
T Consensus 238 ~i~~aGP 244 (569)
T PLN02820 238 TIFLAGP 244 (569)
T ss_pred EEEecCH
Confidence 8877666
No 145
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=41.94 E-value=76 Score=31.74 Aligned_cols=77 Identities=14% Similarity=0.051 Sum_probs=48.7
Q ss_pred hhCCCCCEEEEEcCCCCC-CCCCCCchHHHHHHHH-HHhcc-cCCCEEEEEecccchHHHHHHhcccCCcEEeccC-cee
Q 025916 80 YEDVEKPIYLYINSTGTT-KGGEKLGYETEAFAIY-DVMGY-VKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPS-STI 155 (246)
Q Consensus 80 ~ed~~k~I~LyINSpG~~-~~~~~~G~v~~g~aIy-d~m~~-i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pn-s~i 155 (246)
.....-|+..++.|.|.. ..+.. .....-.++ ...+. -..|..+++.|-|++.+++.++.+ +..++.|+ +.+
T Consensus 113 A~~~~lPlV~l~dSgGarm~eg~~--~l~~~~~~~~~~~~~s~~iP~Isvv~G~~~GG~a~~~al~--D~vim~~~~a~i 188 (512)
T TIGR01117 113 AMKMGAPVVGLNDSGGARIQEAVD--ALKGYGDIFYRNTIASGVVPQISAIMGPCAGGAVYSPALT--DFIYMVDNTSQM 188 (512)
T ss_pred HHHcCCCEEEEecCCCCCccccch--hhhhHHHHHHHHHHHcCCCcEEEEEecCCCcHHHHHHHhc--CceEEeccceEE
Confidence 434567999999999943 11111 000101122 22212 236999999999999999999888 47889996 467
Q ss_pred eeecC
Q 025916 156 MIKQP 160 (246)
Q Consensus 156 MiHqp 160 (246)
.+--|
T Consensus 189 ~~aGP 193 (512)
T TIGR01117 189 FITGP 193 (512)
T ss_pred EecCh
Confidence 76655
No 146
>PF00681 Plectin: Plectin repeat; InterPro: IPR001101 Plectin may have a role in cross-linking intermediate filaments, in inter-linking intermediate filaments with microtubules and microfilaments and in anchoring intermediate filaments to the plasma and nuclear membranes. Plectin is recruited into hemidesmosomes, multiprotein complexes that facilitate adhesion of epithelia to the basement membrane, thereby providing linkage between the intracellular keratin filaments to the laminins of the extracellular matrix. Plectin binds to hemidesmosomes through association of its actin-binding domain with the first pair of fibronectin type III repeats and a small part of the connecting segment of the integrin-beta4 subunit, the latter (integrin-alpha6,beta4) acting as a receptor for the extracellular matrix component laminin-5. The plectin repeat is also seen in the cell adhesion junction plaque proteins, desmoplakin, envoplakin, and bullous pemphigoid antigen. The domains in plakins show considerable sequence homology. The N terminus consists of a plakin domain containing a number of subdomains with high alpha-helical content, while the central coiled-coil domain is composed of heptad repeats involved in the dimerisation of plakin, and the C terminus contains one or more homologous repeat sequences referred to plectin repeats []. This entry represents the plectin repeats found in the C terminus of plakin proteins.; GO: 0005856 cytoskeleton; PDB: 1LM7_A 1LM5_A.
Probab=38.30 E-value=17 Score=24.02 Aligned_cols=19 Identities=32% Similarity=0.489 Sum_probs=15.6
Q ss_pred cCCCccCHHHHHHcCCceE
Q 025916 205 RRPKYFSPSEAVEYGIIDK 223 (246)
Q Consensus 205 ~rd~~~sa~EAleyGLID~ 223 (246)
..+..||-+||++.||||.
T Consensus 17 ~tg~~lsv~~A~~~glId~ 35 (45)
T PF00681_consen 17 ETGERLSVEEAIQRGLIDS 35 (45)
T ss_dssp TTTEEEEHHHHHHTTSS-H
T ss_pred CCCeEEcHHHHHHCCCcCH
Confidence 4567899999999999995
No 147
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=34.63 E-value=1.7e+02 Score=27.36 Aligned_cols=111 Identities=15% Similarity=0.166 Sum_probs=65.7
Q ss_pred hhCCCCCEEEEEcCCCCC-CCCCCC--c--hHHHHHHHHHHhcccCCCEEEEEecccchHHHHHHhc-ccCCcEEeccCc
Q 025916 80 YEDVEKPIYLYINSTGTT-KGGEKL--G--YETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGA-GAKGNRAALPSS 153 (246)
Q Consensus 80 ~ed~~k~I~LyINSpG~~-~~~~~~--G--~v~~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~Ilaa-G~kgkR~a~Pns 153 (246)
.....-|+.+...|.|.. +.|-.. | .+.+ +++...+.-..|..++..|-+++.++..++. |+ -.++-|++
T Consensus 164 A~~~rlPlV~l~~SGGARmQEg~~sL~qmak~sa--a~~~~~~~~~vP~Isvl~gPt~GG~aas~a~l~D--iiiae~~A 239 (296)
T CHL00174 164 ATNESLPLIIVCASGGARMQEGSLSLMQMAKISS--ALYDYQSNKKLFYISILTSPTTGGVTASFGMLGD--IIIAEPNA 239 (296)
T ss_pred HHHcCCCEEEEECCCCccccccchhhhhhHHHHH--HHHHHHHcCCCCEEEEEcCCCchHHHHHHHHccc--EEEEeCCe
Confidence 334567999999999943 222210 1 1111 1222222334799999999999888888776 74 46677888
Q ss_pred eeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916 154 TIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228 (246)
Q Consensus 154 ~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~ 228 (246)
.+.+--|.. +.+-+|. .+. +-|=+++-.++.|+||.|++..
T Consensus 240 ~IgfAGPrV--------------------------Ie~t~ge-------~lp-e~fq~ae~l~~~G~vD~iV~r~ 280 (296)
T CHL00174 240 YIAFAGKRV--------------------------IEQTLNK-------TVP-EGSQAAEYLFDKGLFDLIVPRN 280 (296)
T ss_pred EEEeeCHHH--------------------------HHHhcCC-------cCC-cccccHHHHHhCcCceEEEcHH
Confidence 776554431 1111221 111 2244778788899999888754
No 148
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=34.23 E-value=58 Score=32.21 Aligned_cols=71 Identities=17% Similarity=0.241 Sum_probs=46.5
Q ss_pred CCCCEEEEEcCCCCCCCCCCCchHHHHH-------HHHHHhccc--CCCEEEEEecccchHHHHHHhcccCCcEEeccC-
Q 025916 83 VEKPIYLYINSTGTTKGGEKLGYETEAF-------AIYDVMGYV--KPPIFTLCVGNAWGEAALLLGAGAKGNRAALPS- 152 (246)
Q Consensus 83 ~~k~I~LyINSpG~~~~~~~~G~v~~g~-------aIyd~m~~i--~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pn- 152 (246)
..-|+..+++|.|.. +...+++ .|+..+... ..|+.+++.|-|.+.++++.+.++ ..++.+.
T Consensus 91 ~~~P~v~l~dsgGa~------~r~~eg~~~l~~~g~i~~~~~~~~~~iP~I~vv~G~~~Gg~A~~~~~~d--~~i~~~~~ 162 (493)
T PF01039_consen 91 NGLPLVYLVDSGGAF------LRMQEGVESLMGMGRIFRAIARLSGGIPQISVVTGPCTGGGAYLAALSD--FVIMVKGT 162 (493)
T ss_dssp HTEEEEEEEEESSBC------GGGGGHHHHHHHHHHHHHHHHHHHTTS-EEEEEESEEEGGGGHHHHHSS--EEEEETTT
T ss_pred cCCCcEEeccccccc------cccchhhhhhhhhHHHHHHHHHHhcCCCeEEEEccccccchhhcccccC--ccccCccc
Confidence 356888889999920 0222222 222222222 479999999999999999988874 5677776
Q ss_pred ceeeeecCC
Q 025916 153 STIMIKQPI 161 (246)
Q Consensus 153 s~iMiHqp~ 161 (246)
+.+.+.-|.
T Consensus 163 a~i~l~GP~ 171 (493)
T PF01039_consen 163 ARIFLAGPR 171 (493)
T ss_dssp CEEESSTHH
T ss_pred eEEEecccc
Confidence 888876664
No 149
>PF01381 HTH_3: Helix-turn-helix; InterPro: IPR001387 This is large family of DNA binding helix-turn helix proteins that include a bacterial plasmid copy control protein, bacterial methylases, various bacteriophage transcription control proteins and a vegetative specific protein from Dictyostelium discoideum (Slime mould).; GO: 0043565 sequence-specific DNA binding; PDB: 2AXU_A 2AWI_D 2AXV_D 2AXZ_C 2AW6_A 3KXA_C 3BS3_A 2CRO_A 1ZUG_A 3CRO_R ....
Probab=32.48 E-value=83 Score=20.59 Aligned_cols=32 Identities=16% Similarity=0.026 Sum_probs=26.2
Q ss_pred HHHHHHHhCCCHHHHHHHhcCCCccCHHHHHH
Q 025916 186 VKLYAKHFGKTPEQIEADIRRPKYFSPSEAVE 217 (246)
Q Consensus 186 ~~iya~~Tg~~~e~I~~~~~rd~~~sa~EAle 217 (246)
..-+++.+|.++..|.++.......+.+.+..
T Consensus 12 ~~~la~~~gis~~~i~~~~~g~~~~~~~~~~~ 43 (55)
T PF01381_consen 12 QKELAEKLGISRSTISRIENGKRNPSLDTLKK 43 (55)
T ss_dssp HHHHHHHHTS-HHHHHHHHTTSSTSBHHHHHH
T ss_pred HHHHHHHhCCCcchhHHHhcCCCCCCHHHHHH
Confidence 45689999999999999999888888887764
No 150
>smart00250 PLEC Plectin repeat.
Probab=30.71 E-value=36 Score=21.52 Aligned_cols=19 Identities=32% Similarity=0.391 Sum_probs=16.1
Q ss_pred CCCccCHHHHHHcCCceEE
Q 025916 206 RPKYFSPSEAVEYGIIDKV 224 (246)
Q Consensus 206 rd~~~sa~EAleyGLID~I 224 (246)
...-+|-.||++-|+||.-
T Consensus 18 t~~~lsv~eA~~~glid~~ 36 (38)
T smart00250 18 TGQKLSVEEALRRGLIDPE 36 (38)
T ss_pred CCCCcCHHHHHHcCCCCcc
Confidence 4667999999999999963
No 151
>COG4710 Predicted DNA-binding protein with an HTH domain [General function prediction only]
Probab=30.64 E-value=61 Score=24.38 Aligned_cols=34 Identities=32% Similarity=0.497 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhCCCHH-----HHHH---HhcCCCccCHHHHHH
Q 025916 181 VKAELVKLYAKHFGKTPE-----QIEA---DIRRPKYFSPSEAVE 217 (246)
Q Consensus 181 ~~~~i~~iya~~Tg~~~e-----~I~~---~~~rd~~~sa~EAle 217 (246)
+++++ +.++++||+|.. -|++ .|+ |+|| |.+|++
T Consensus 16 ~~eRL-~~Ls~~tgrtkayyvrEaIE~~ieemE-D~yl-A~~ale 57 (80)
T COG4710 16 LKERL-DNLSKNTGRTKAYYVREAIEAYIEEME-DFYL-AVNALE 57 (80)
T ss_pred HHHHH-HHHHHhcCCchhHHHHHHHHHHHHHHH-HHHH-HHHHHH
Confidence 34444 468999999853 3443 333 6776 666665
No 152
>TIGR03070 couple_hipB transcriptional regulator, y4mF family. Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems.
Probab=30.22 E-value=1.2e+02 Score=19.49 Aligned_cols=32 Identities=9% Similarity=-0.136 Sum_probs=24.2
Q ss_pred HHHHHHHHhCCCHHHHHHHhcCCCccCHHHHH
Q 025916 185 LVKLYAKHFGKTPEQIEADIRRPKYFSPSEAV 216 (246)
Q Consensus 185 i~~iya~~Tg~~~e~I~~~~~rd~~~sa~EAl 216 (246)
-.+-+++.+|.+...|.++.....-.+.+++.
T Consensus 17 tq~~lA~~~gvs~~~vs~~e~g~~~~~~~~~~ 48 (58)
T TIGR03070 17 TQADLADLAGVGLRFIRDVENGKPTVRLDKVL 48 (58)
T ss_pred CHHHHHHHhCCCHHHHHHHHCCCCCCCHHHHH
Confidence 35678899999999999988766556666544
No 153
>PHA00099 minor capsid protein
Probab=29.22 E-value=2.6e+02 Score=23.31 Aligned_cols=53 Identities=21% Similarity=0.352 Sum_probs=38.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHH---HHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCc
Q 025916 167 QATDVEIARKEMKNVKAELVKL---YAKHFGKTPEQIEADIRRPKYFSPSEAVEYGII 221 (246)
Q Consensus 167 ~a~di~i~a~el~~~~~~i~~i---ya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLI 221 (246)
.+-|.....+-+.+..+.|..+ +.++.|-+++++...++++. +-+||+.+||+
T Consensus 59 sp~D~qeAl~~V~~~qeaFdsLPA~iR~~F~NdP~eml~~L~dp~--NydEa~~LGl~ 114 (147)
T PHA00099 59 SPMDYQEALNVVIEAQEAFDSLPAKIRERFGNDPEEMLDFLSDPE--NYDEAKALGLV 114 (147)
T ss_pred CchhHHHHHHHHHHHHHHHHhhhHHHHHHhCCCHHHHHHHHcChh--hHHHHHhccee
Confidence 4566666666666666666554 55678899999999887654 34899999999
No 154
>PF00216 Bac_DNA_binding: Bacterial DNA-binding protein; InterPro: IPR000119 Bacteria synthesise a set of small, usually basic proteins of about 90 residues that bind DNA and are known as histone-like proteins [, ]. Examples include the HU protein in Escherichia coli is a dimer of closely related alpha and beta chains and in other bacteria can be a dimer of identical chains. HU-type proteins have been found in a variety of eubacteria, cyanobacteria and archaebacteria, and are also encoded in the chloroplast genome of some algae []. The integration host factor (IHF), a dimer of closely related chains which seem to function in genetic recombination as well as in translational and transcriptional control [] is found in enterobacteria and viral proteins include the African Swine fever virus protein A104R (or LMW5-AR) []. The exact function of these proteins is not yet clear but they are capable of wrapping DNA and stabilising it from denaturation under extreme environmental conditions. The structure is known for one of these proteins []. The protein exists as a dimer and two "beta-arms" function as the non-specific binding site for bacterial DNA. ; GO: 0003677 DNA binding; PDB: 3C4I_B 2O97_A 1MUL_A 1P78_A 1P51_C 1P71_B 2HT0_A 1OWG_A 2IIF_A 1OUZ_A ....
Probab=29.11 E-value=62 Score=23.64 Aligned_cols=37 Identities=30% Similarity=0.363 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcC
Q 025916 182 KAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYG 219 (246)
Q Consensus 182 ~~~i~~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyG 219 (246)
++.+++.+++.+|.+..++.+.++ ..+-.-.+++..|
T Consensus 3 k~eli~~ia~~~~~s~~~v~~vl~-~~~~~i~~~L~~g 39 (90)
T PF00216_consen 3 KKELIKRIAEKTGLSKKDVEAVLD-ALFDVIKEALKEG 39 (90)
T ss_dssp HHHHHHHHHHHHTSSHHHHHHHHH-HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHH-HHHHHHHHHHhcC
Confidence 567889999999999999999887 3444456666665
No 155
>TIGR01729 taurine_ABC_bnd taurine ABC transporter, periplasmic binding protein. This model identifies a cluster of ABC transporter periplasmic substrate binding proteins, apparently specific for taurine. Transport systems for taurine (NH2-CH2-CH2-SO3H), sulfonates, and sulfate esters import sulfur when sulfate levels are low. The most closely related proteins outside this family are putative aliphatic sulfonate binding proteins (TIGR01728).
Probab=28.91 E-value=2e+02 Score=25.58 Aligned_cols=31 Identities=19% Similarity=0.236 Sum_probs=25.4
Q ss_pred HHHHHHHHhCCCHHHHHHHhcCCCccCHHHH
Q 025916 185 LVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 215 (246)
Q Consensus 185 i~~iya~~Tg~~~e~I~~~~~rd~~~sa~EA 215 (246)
..+++++.+|.+.+.+.+.+....|.+..+.
T Consensus 226 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (300)
T TIGR01729 226 QVQKMAKLIGGDAEGVPQLLKGLSFPTADEQ 256 (300)
T ss_pred HHHHHHHHhCcCHHHHHHHHhcCCCCCHHHh
Confidence 3477889999999999999988788777654
No 156
>smart00411 BHL bacterial (prokaryotic) histone like domain.
Probab=28.42 E-value=70 Score=23.48 Aligned_cols=37 Identities=24% Similarity=0.290 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcC
Q 025916 182 KAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYG 219 (246)
Q Consensus 182 ~~~i~~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyG 219 (246)
++.+.+.+++++|.+..++...++ ..+=.-.+++..|
T Consensus 3 k~eli~~ia~~~~~~~~~v~~vl~-~l~~~i~~~L~~g 39 (90)
T smart00411 3 KSELIDAIAEKAGLSKKDAKAAVD-AFLEIITEALKKG 39 (90)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHH-HHHHHHHHHHhCC
Confidence 467788899999999999999888 4555557777777
No 157
>TIGR02763 chlamy_scaf chlamydiaphage internal scaffolding protein. Members of this protein family are encoded by genes in chlamydiaphage such as Chp2, viruses with around eight genes that infect obligately intracellular bacterial pathogens of the genus Chlamydia. This protein, initially designated VP3 (as if a structural protein of mature viral particles), is displaced from procapsids as DNA is packaged, and therefore is described as a scafolding protein.
Probab=26.84 E-value=3.1e+02 Score=21.99 Aligned_cols=56 Identities=18% Similarity=0.236 Sum_probs=38.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHH---HHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEE
Q 025916 167 QATDVEIARKEMKNVKAELVKL---YAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKV 224 (246)
Q Consensus 167 ~a~di~i~a~el~~~~~~i~~i---ya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~I 224 (246)
.+-|.....+-+-+..+.|..+ ..++.|-++++..++++++.- -+|++..||.|.=
T Consensus 29 sp~D~qeAln~Vie~~eaFdsLPAkvRe~FgNdPeeml~~L~d~~n--yde~~algll~~e 87 (114)
T TIGR02763 29 SPLDYQEALNIVIEGEEAFDSLPAKVRENFGNDPEEMLSWLEDEAN--YDEVEALGLLDPE 87 (114)
T ss_pred CchhHHHHHHHHHHHHHHHHHhhHHHHHHhCCCHHHHHHHHhChhh--HHHHHHhcccccc
Confidence 4566666666666666666554 556789999999998875432 2588899999853
No 158
>TIGR00987 himA integration host factor, alpha subunit. This protein forms a site-specific DNA-binding heterodimer with the integration host factor beta subunit. It is closely related to the DNA-binding protein HU.
Probab=25.44 E-value=83 Score=23.82 Aligned_cols=37 Identities=19% Similarity=0.241 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcC
Q 025916 182 KAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYG 219 (246)
Q Consensus 182 ~~~i~~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyG 219 (246)
++.+++.+++++|.+..+++..++ ..+-.-.|++..|
T Consensus 4 k~eli~~ia~~~~~s~~~v~~vv~-~~~~~i~~~L~~g 40 (96)
T TIGR00987 4 KAEMSEYLFDELGLSKREAKELVE-LFFEEIRRALENG 40 (96)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHH-HHHHHHHHHHHcC
Confidence 456788899999999999999998 4555667777777
No 159
>COG0757 AroQ 3-dehydroquinate dehydratase II [Amino acid transport and metabolism]
Probab=25.28 E-value=1.6e+02 Score=24.75 Aligned_cols=33 Identities=27% Similarity=0.529 Sum_probs=26.2
Q ss_pred EEEcCCCCCCCCCCCchHHHHHHHHHHhcccCCCEEEEEecc
Q 025916 89 LYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGN 130 (246)
Q Consensus 89 LyINSpG~~~~~~~~G~v~~g~aIyd~m~~i~~~V~Ti~~G~ 130 (246)
+.|| || ++.--..||.|++..+..|+.-+=+..
T Consensus 70 IvIN-pg--------a~THTSvAlrDAi~av~iP~vEVHlSN 102 (146)
T COG0757 70 IVIN-PG--------AYTHTSVALRDAIAAVSIPVVEVHLSN 102 (146)
T ss_pred EEEc-Cc--------cchhhHHHHHHHHHhcCCCEEEEEecC
Confidence 7777 57 677889999999999998876665443
No 160
>KOG0540 consensus 3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=25.18 E-value=1.9e+02 Score=29.00 Aligned_cols=57 Identities=19% Similarity=0.308 Sum_probs=39.6
Q ss_pred hCCCCCEEEEEcCCCCCCCCCC--CchHHHHHHHHHHhcccCCCEEEEEecccchHHHHH
Q 025916 81 EDVEKPIYLYINSTGTTKGGEK--LGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALL 138 (246)
Q Consensus 81 ed~~k~I~LyINSpG~~~~~~~--~G~v~~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~I 138 (246)
....=|+.+.-|+||....+.. -|=.-.|--+.+....-+.|-.|+..|-+++ |.+=
T Consensus 381 ~q~~IPLi~l~ni~Gfm~g~~~e~~gIaK~gAklv~a~a~akvpkITiit~~syG-G~y~ 439 (536)
T KOG0540|consen 381 DQRNIPLIFLQNITGFMVGRAAEAGGIAKHGAKLVYAVACAKVPKITIITGGSYG-GNYA 439 (536)
T ss_pred HhcCCcEEEEEccCCccccchhhhhchhhhhhhhhhhhhhccCceEEEEecCccC-Cccc
Confidence 3456789999999996643321 1334455556677777778888999999998 5555
No 161
>TIGR03427 ABC_peri_uca ABC transporter periplasmic binding protein, urea carboxylase region. Members of this family are ABC transporter periplasmic binding proteins associated with the urea carboxylase/allophanate hydrolase pathway, an alternative to urease for urea degradation. The protein is restricted to bacteria with the pathway, with its gene close to the urea carboxylase and allophanate hydrolase genes. The substrate for this transporter therefore is likely to be urea or a compound from which urea is easily derived.
Probab=25.16 E-value=1.4e+02 Score=27.88 Aligned_cols=36 Identities=28% Similarity=0.448 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHhcCCCcc-CHHHHHHc
Q 025916 183 AELVKLYAKHFGKTPEQIEADIRRPKYF-SPSEAVEY 218 (246)
Q Consensus 183 ~~i~~iya~~Tg~~~e~I~~~~~rd~~~-sa~EAley 218 (246)
+...+++++.+|.+.+.+.+.+++..|+ +++|.+.+
T Consensus 226 ~ea~~~~ak~~g~~~~~~~~~l~~~~~~~~~~~~~~~ 262 (328)
T TIGR03427 226 KAALEAMAKASGTDLAGYKAQLKTTKMFYTPKEAVAF 262 (328)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHhhccccCCHHHHHhh
Confidence 5688999999999999999999888874 55565554
No 162
>PRK10753 transcriptional regulator HU subunit alpha; Provisional
Probab=24.28 E-value=91 Score=23.51 Aligned_cols=37 Identities=19% Similarity=0.285 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcC
Q 025916 182 KAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYG 219 (246)
Q Consensus 182 ~~~i~~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyG 219 (246)
+..+++.+++++|++..++...++ ..+-.-.+++..|
T Consensus 3 K~eli~~ia~~~~~s~~~~~~~v~-~~~~~i~~~L~~g 39 (90)
T PRK10753 3 KTQLIDVIADKAELSKTQAKAALE-STLAAITESLKEG 39 (90)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHH-HHHHHHHHHHHcC
Confidence 456788889999999999999888 4555567777776
No 163
>PF07027 DUF1318: Protein of unknown function (DUF1318); InterPro: IPR008309 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=24.01 E-value=2.5e+02 Score=21.81 Aligned_cols=38 Identities=24% Similarity=0.230 Sum_probs=33.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHh
Q 025916 167 QATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADI 204 (246)
Q Consensus 167 ~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~~~~ 204 (246)
...++....++++.-|+.+..-+++..|.|+++|.+..
T Consensus 34 ~~~~~~~lV~~~N~~R~~~Y~~iA~~ng~t~~~V~~~~ 71 (95)
T PF07027_consen 34 ASAEVRALVAAINADRRALYQEIAKKNGITVEQVAATA 71 (95)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 44678888899999999999999999999999998755
No 164
>PRK09726 antitoxin HipB; Provisional
Probab=23.80 E-value=2.1e+02 Score=21.14 Aligned_cols=57 Identities=14% Similarity=0.057 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCccCHHH----HHHcCCceEE
Q 025916 168 ATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSE----AVEYGIIDKV 224 (246)
Q Consensus 168 a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~~~~~rd~~~sa~E----AleyGLID~I 224 (246)
+..+....+++.+.+..-.+-+++.+|.+...|.++.......+.+. |.-+|+--.+
T Consensus 10 ~~~l~~~lk~~R~~~gltq~elA~~~gvs~~tis~~e~g~~~ps~~~l~~ia~~lgv~~~~ 70 (88)
T PRK09726 10 PTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELSMTL 70 (88)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHcCCCcch
Confidence 44565556666555555577899999999999999988665555544 3445644344
No 165
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=22.88 E-value=6.9e+02 Score=24.08 Aligned_cols=119 Identities=13% Similarity=0.084 Sum_probs=70.7
Q ss_pred CchhHHHHHHhhCCCCCEEEEEcCCCCCCCCCCCchHH--HHHHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcE
Q 025916 70 SKPRSPVITMYEDVEKPIYLYINSTGTTKGGEKLGYET--EAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNR 147 (246)
Q Consensus 70 ~~a~~iiaqL~ed~~k~I~LyINSpG~~~~~~~~G~v~--~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR 147 (246)
+....+++.|.. ..+-.++++|+++...++-.+|++. +.+.++..|..... -|.+
T Consensus 219 Enia~~~a~l~~-~~kL~hiH~nd~~~~Ddd~~vG~~d~~e~~~il~el~~~~~----------------------~~~~ 275 (378)
T TIGR02635 219 TNIEFIVATLLD-EKKLGGFHFNSRKYADDDLTVGAINPYELFLIFKEIVRAGR----------------------DPED 275 (378)
T ss_pred CCHHHHHHHHhh-CCceeEEEecCCCcccCCCceecCCHHHHHHHHHHHHhcCC----------------------CCcc
Confidence 344446666632 2355568889987544555567765 77887777764321 0111
Q ss_pred EeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCC
Q 025916 148 AALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGI 220 (246)
Q Consensus 148 ~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGL 220 (246)
.. +...+|+-+..... . ..+++...-+.+.++|++..-.+.+.+.+..++..++.++|.+.-.|
T Consensus 276 ~~-~~~~~~lD~f~~~~-~-------~i~a~~~~~~~~~~~~~~All~~~~~L~~a~~~~D~~~a~~~~~~a~ 339 (378)
T TIGR02635 276 SA-SDVALMLDQCHNLE-P-------KIPAMIRSVLNVQELFAKALLVDRDALRKAQENGDVLEAEAVLMDAF 339 (378)
T ss_pred cc-cceEEEEecCcccc-c-------cHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 01 23356665544222 1 22223333345556666666779999999999999999999987544
No 166
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=22.44 E-value=3.4e+02 Score=25.50 Aligned_cols=69 Identities=14% Similarity=0.206 Sum_probs=45.3
Q ss_pred CCchhHHHHHHhhCCCCCEEEEEcCCCCCCCCCCCchHHHH-HHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcE
Q 025916 69 KSKPRSPVITMYEDVEKPIYLYINSTGTTKGGEKLGYETEA-FAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNR 147 (246)
Q Consensus 69 ~~~a~~iiaqL~ed~~k~I~LyINSpG~~~~~~~~G~v~~g-~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR 147 (246)
....-+.+..|.+|+.-...+.|-=.| |...+- ...+.. +..+.||..+..|..+ .+|+|
T Consensus 185 Gt~fid~L~~fe~Dp~T~~ivmiGEiG--------G~aEe~AA~~i~~-~~~~KPVVa~iaG~ta----------p~gkr 245 (293)
T COG0074 185 GTSFIDALEMFEADPETEAIVMIGEIG--------GPAEEEAAEYIKA-NATRKPVVAYIAGRTA----------PEGKR 245 (293)
T ss_pred CccHHHHHHHHhcCccccEEEEEecCC--------CcHHHHHHHHHHH-hccCCCEEEEEeccCC----------Cccch
Confidence 344444445557788878888898888 764433 333333 3344899999999988 66777
Q ss_pred EeccCceee
Q 025916 148 AALPSSTIM 156 (246)
Q Consensus 148 ~a~Pns~iM 156 (246)
+..-.|.+.
T Consensus 246 mGhaGaiv~ 254 (293)
T COG0074 246 MGHAGAIVS 254 (293)
T ss_pred hhhhhhhhc
Confidence 776655553
No 167
>cd00591 HU_IHF Integration host factor (IHF) and HU are small heterodimeric members of the DNABII protein family that bind and bend DNA, functioning as architectural factors in many cellular processes including transcription, site-specific recombination, and higher-order nucleoprotein complex assembly. The dimer subunits associate to form a compact globular core from which two beta ribbon arms (one from each subunit) protrude. The beta arms track and bind the DNA minor groove. Despite sequence and structural similarity, IHF and HU can be distinguished by their different DNA substrate preferences.
Probab=22.07 E-value=1.1e+02 Score=22.28 Aligned_cols=37 Identities=27% Similarity=0.310 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcC
Q 025916 182 KAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYG 219 (246)
Q Consensus 182 ~~~i~~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyG 219 (246)
++.+++.+++++|.+..++...++ ..+-.-.+++..|
T Consensus 2 K~~l~~~ia~~~~~~~~~v~~vl~-~~~~~i~~~L~~g 38 (87)
T cd00591 2 KSELIEAIAEKTGLSKKDAEAAVD-AFLDVITEALAKG 38 (87)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHH-HHHHHHHHHHhCC
Confidence 567888999999999999999887 4555556677666
No 168
>PF04110 APG12: Ubiquitin-like autophagy protein Apg12 ; InterPro: IPR007242 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents Apg12, which is covalently bound to Apg5 [].; GO: 0000045 autophagic vacuole assembly, 0005737 cytoplasm; PDB: 1WZ3_B.
Probab=21.30 E-value=99 Score=23.74 Aligned_cols=47 Identities=23% Similarity=0.396 Sum_probs=21.6
Q ss_pred HHhhCCCCCEEEEEcC---CCCCCCCCCCchHHHHHHHHHHhcccCCCEEEEEecccch
Q 025916 78 TMYEDVEKPIYLYINS---TGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWG 133 (246)
Q Consensus 78 qL~ed~~k~I~LyINS---pG~~~~~~~~G~v~~g~aIyd~m~~i~~~V~Ti~~G~AaS 133 (246)
+|.-.+.+.+++|||+ |. --|.+|+.+. ...--..=|.-+|...|++
T Consensus 38 ~Lk~~~~~slFlYin~sFaPs---pDe~vg~L~~------~f~~~~~Liv~Ys~t~A~G 87 (87)
T PF04110_consen 38 KLKLKPSDSLFLYINNSFAPS---PDETVGDLYR------CFGTNGELIVSYSKTPAWG 87 (87)
T ss_dssp HCT----SS-EEEEEEEE------TTSBHHHHHH------HH-BTTBEEEEEESSS---
T ss_pred HhCCccCCeEEEEEcCccCCC---chhHHHHHHH------HhCCCCEEEEEEecccccC
Confidence 3333457899999997 44 2233455544 4443333467788777764
No 169
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=20.69 E-value=1.2e+02 Score=24.84 Aligned_cols=40 Identities=15% Similarity=0.188 Sum_probs=26.7
Q ss_pred chhHHHHHHhhCCCCCEEEEEcCCCCCCCCCCCchHHHHHHHHHHhc
Q 025916 71 KPRSPVITMYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMG 117 (246)
Q Consensus 71 ~a~~iiaqL~ed~~k~I~LyINSpG~~~~~~~~G~v~~g~aIyd~m~ 117 (246)
.-+.|+.-+... .+.-.|.+||-.+. |-.+-++.||+.|+
T Consensus 110 ~iD~fi~~v~~~-p~~~~l~fhC~~G~------GRTTt~Mv~~~li~ 149 (149)
T PF14566_consen 110 DIDAFINFVKSL-PKDTWLHFHCQAGR------GRTTTFMVMYDLIR 149 (149)
T ss_dssp HHHHHHHHHHTS--TT-EEEEE-SSSS------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCCeEEEECCCCC------CHHHHHHHHHHHhC
Confidence 444555544444 45788999998844 88999999999885
No 170
>PF14117 DUF4287: Domain of unknown function (DUF4287)
Probab=20.45 E-value=1.6e+02 Score=21.09 Aligned_cols=33 Identities=24% Similarity=0.133 Sum_probs=22.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHhcCC-CccCHHHHH
Q 025916 184 ELVKLYAKHFGKTPEQIEADIRRP-KYFSPSEAV 216 (246)
Q Consensus 184 ~i~~iya~~Tg~~~e~I~~~~~rd-~~~sa~EAl 216 (246)
.+..-+-++||++.+++.+.++.. -.....|-+
T Consensus 4 sy~~~Ie~kTGk~~~~W~~~~~~~~~~~k~~e~v 37 (61)
T PF14117_consen 4 SYLPNIEKKTGKTLDEWLALAREGGPLTKHGEIV 37 (61)
T ss_pred HHHhHhHHHHCcCHHHHHHHHHHhCCCCcHHHHH
Confidence 344557889999999999988754 444444443
No 171
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=20.41 E-value=1e+02 Score=30.71 Aligned_cols=34 Identities=26% Similarity=0.215 Sum_probs=26.6
Q ss_pred ccCCCCC-CCchhHHHHHHhhCCCCCEEEEEcCCC
Q 025916 62 LNPDSFC-KSKPRSPVITMYEDVEKPIYLYINSTG 95 (246)
Q Consensus 62 Ll~~RIi-~~~a~~iiaqL~ed~~k~I~LyINSpG 95 (246)
|.++.|| ..+...|+..|.+.+.|.||+.|-||=
T Consensus 353 lVDDSIVRGTTsr~IV~mlReAGAkEVHvriasP~ 387 (470)
T COG0034 353 LVDDSIVRGTTSRRIVQMLREAGAKEVHVRIASPP 387 (470)
T ss_pred EEccccccCccHHHHHHHHHHhCCCEEEEEecCCC
Confidence 3445555 567777777778889999999999997
No 172
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=20.34 E-value=2.4e+02 Score=20.57 Aligned_cols=29 Identities=14% Similarity=0.193 Sum_probs=22.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHhcCCCccCHH
Q 025916 184 ELVKLYAKHFGKTPEQIEADIRRPKYFSPS 213 (246)
Q Consensus 184 ~i~~iya~~Tg~~~e~I~~~~~rd~~~sa~ 213 (246)
.+.+.+++.+|.+.+++.++++.+ .+|++
T Consensus 45 ~~~~~lAk~~G~t~~~l~~~~~~G-kit~~ 73 (75)
T TIGR02675 45 GALQALAKAMGVTRGELRKMLSDG-KLTAD 73 (75)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHCC-CCccc
Confidence 366789999999999999998854 45544
No 173
>PF03572 Peptidase_S41: Peptidase family S41; InterPro: IPR005151 This group of putative serine peptidases belong to the MEROPS peptidase family S41 (C-terminal processing peptidase family, clan SM). The members of this group include: the tricorn protease of bacteria and archaea, C-terminal peptidases with different substrates specificities in different species including processing of D1 protein of the photosystem II reaction centre in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein; and some appear to be responsible for degrading oligopeptides, probably derived from the proteasome. ; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A 3K50_A 3DJA_B 3DPM_B 3DPN_A 3DOR_B 1J7X_A ....
Probab=20.10 E-value=3.8e+02 Score=21.25 Aligned_cols=60 Identities=13% Similarity=0.190 Sum_probs=39.5
Q ss_pred HHHHHHhhCCCCCEEEEE-cCCCCCCCCCCCchHHHHHHHHHHhcc-----------------------------cCCCE
Q 025916 74 SPVITMYEDVEKPIYLYI-NSTGTTKGGEKLGYETEAFAIYDVMGY-----------------------------VKPPI 123 (246)
Q Consensus 74 ~iiaqL~ed~~k~I~LyI-NSpG~~~~~~~~G~v~~g~aIyd~m~~-----------------------------i~~~V 123 (246)
.++.++.+.+.+.+.|-+ +.+| |+...+..+...+-. .+.||
T Consensus 22 ~~~~~~~~~~~~~lIIDlR~N~G--------G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 93 (169)
T PF03572_consen 22 EFLDKLKSKDTDGLIIDLRGNGG--------GSDEYAIELLSYLIPKPIIFYYRDRIGSNKKWVSTIKWSTPKNRFNGPV 93 (169)
T ss_dssp HHHHHHHHTTSSEEEEE-TTB----------BSHHHHHHHHHCHSSSSEEEEEEEEEEEETTCCHEEEECSSTT-SSSEE
T ss_pred HHHHHHHHCCCCEEEEEcccCCC--------cchHHHHHHHhcccCCCcEEEEecccccccccccCCCCccccccCCCCE
Confidence 344444445667787777 6678 888888877765531 23578
Q ss_pred EEEEecccchHHHHHHhc
Q 025916 124 FTLCVGNAWGEAALLLGA 141 (246)
Q Consensus 124 ~Ti~~G~AaS~aa~Ilaa 141 (246)
..++.+.++|+|-+++.+
T Consensus 94 ~vL~~~~t~Saae~fa~~ 111 (169)
T PF03572_consen 94 YVLTDENTASAAEIFASA 111 (169)
T ss_dssp EEEE-TTBBTHHHHHHHH
T ss_pred EEEeCCCCCChhHHHHHH
Confidence 899999999998887766
No 174
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=20.09 E-value=40 Score=31.91 Aligned_cols=45 Identities=24% Similarity=0.324 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhcccCCCEEEEEe-------cc----cchHHHHHHhcccCCcEEecc
Q 025916 106 ETEAFAIYDVMGYVKPPIFTLCV-------GN----AWGEAALLLGAGAKGNRAALP 151 (246)
Q Consensus 106 v~~g~aIyd~m~~i~~~V~Ti~~-------G~----AaS~aa~IlaaG~kgkR~a~P 151 (246)
-.+++.|||+.+.+...+.--.+ |. .....++|||+|. +.|+-.+
T Consensus 122 ~~a~ltiydm~k~~~~~~~i~~~~l~~k~gg~s~~~~~~i~~IILAGGk-SsRMG~d 177 (346)
T PRK14500 122 AVAALTIYDMCKSISPHIIIKETRLIEKSGGKADLSQTPLYGLVLTGGK-SRRMGKD 177 (346)
T ss_pred HHHHHHHHHHHhccCCCcEEeeEEEEEecCCcCCCCCCCceEEEEeccc-cccCCCC
Confidence 45668999999999864332222 22 2366778888885 7887543
Done!