Query 025917
Match_columns 246
No_of_seqs 137 out of 1170
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 11:02:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025917.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025917hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02757 sirohydrochlorine fer 100.0 2.5E-30 5.5E-35 217.7 15.7 127 117-244 4-130 (154)
2 PRK00923 sirohydrochlorin coba 100.0 1.7E-27 3.8E-32 191.7 13.7 118 126-244 1-125 (126)
3 cd03415 CbiX_CbiC Archaeal sir 99.9 2.1E-27 4.6E-32 193.9 13.6 116 127-244 1-124 (125)
4 cd03414 CbiX_SirB_C Sirohydroc 99.9 3.2E-26 7E-31 181.2 14.3 116 127-245 1-116 (117)
5 PRK02395 hypothetical protein; 99.9 1E-25 2.2E-30 204.7 11.4 186 40-245 60-259 (279)
6 PF01903 CbiX: CbiX; InterPro 99.9 8.3E-26 1.8E-30 175.5 7.2 105 134-240 1-105 (105)
7 cd03416 CbiX_SirB_N Sirohydroc 99.9 3.6E-24 7.8E-29 165.7 13.3 101 128-228 1-101 (101)
8 PRK05782 bifunctional sirohydr 99.9 2.6E-24 5.7E-29 200.8 14.1 120 123-244 3-130 (335)
9 PRK02395 hypothetical protein; 99.9 2.5E-21 5.4E-26 175.9 11.0 113 127-244 2-125 (279)
10 cd03412 CbiK_N Anaerobic cobal 99.8 1.6E-20 3.5E-25 152.9 13.8 105 127-234 1-116 (127)
11 COG2138 Sirohydrochlorin ferro 99.8 7.6E-20 1.6E-24 164.5 9.8 113 126-242 2-114 (245)
12 cd03413 CbiK_C Anaerobic cobal 99.8 2.7E-18 5.9E-23 135.7 8.6 86 127-215 1-87 (103)
13 cd03409 Chelatase_Class_II Cla 99.7 4.7E-17 1E-21 124.6 11.1 87 128-214 1-88 (101)
14 COG2138 Sirohydrochlorin ferro 99.7 4.8E-17 1E-21 146.4 5.9 189 25-244 45-238 (245)
15 PF06180 CbiK: Cobalt chelatas 99.3 3.2E-12 7E-17 116.3 6.0 117 124-244 139-259 (262)
16 PRK00035 hemH ferrochelatase; 99.2 1.3E-10 2.7E-15 107.8 10.1 174 49-244 131-321 (333)
17 cd00419 Ferrochelatase_C Ferro 99.1 6.7E-10 1.4E-14 91.6 11.8 105 124-228 16-135 (135)
18 PF06180 CbiK: Cobalt chelatas 99.1 3.4E-10 7.3E-15 103.1 8.1 101 127-230 1-114 (262)
19 PRK00035 hemH ferrochelatase; 99.0 1.8E-09 3.8E-14 100.2 11.9 112 130-243 64-177 (333)
20 COG4822 CbiK Cobalamin biosynt 98.9 4E-08 8.7E-13 87.7 13.4 113 124-240 135-251 (265)
21 TIGR00109 hemH ferrochelatase. 98.6 4.2E-07 9.1E-12 84.7 11.4 117 126-244 188-319 (322)
22 TIGR00109 hemH ferrochelatase. 98.1 1.4E-05 2.9E-10 74.6 9.3 98 142-243 73-177 (322)
23 COG4822 CbiK Cobalamin biosynt 98.0 7E-06 1.5E-10 73.5 5.3 102 125-229 1-115 (265)
24 PLN02449 ferrochelatase 97.9 9.2E-05 2E-09 73.0 10.5 119 124-243 274-410 (485)
25 cd03411 Ferrochelatase_N Ferro 97.9 0.00013 2.8E-09 61.4 9.9 79 133-212 61-140 (159)
26 PF00762 Ferrochelatase: Ferro 97.9 2.9E-05 6.3E-10 72.4 6.4 118 126-244 183-314 (316)
27 PRK12435 ferrochelatase; Provi 97.8 0.00041 9E-09 64.7 12.7 117 125-243 173-304 (311)
28 PF00762 Ferrochelatase: Ferro 97.4 0.0017 3.7E-08 60.7 10.7 98 144-243 74-172 (316)
29 PRK12435 ferrochelatase; Provi 97.1 0.006 1.3E-07 57.0 11.6 82 159-243 79-161 (311)
30 COG0276 HemH Protoheme ferro-l 97.1 0.007 1.5E-07 57.1 11.7 100 142-243 72-174 (320)
31 PLN02449 ferrochelatase 96.5 0.018 3.8E-07 57.2 10.1 109 133-243 153-265 (485)
32 COG0276 HemH Protoheme ferro-l 96.4 0.058 1.2E-06 51.0 12.3 116 124-240 182-312 (320)
33 PLN02757 sirohydrochlorine fer 93.5 0.014 3.1E-07 49.3 -1.0 74 42-136 77-150 (154)
34 cd03415 CbiX_CbiC Archaeal sir 91.9 0.013 2.8E-07 48.0 -3.3 52 40-94 61-113 (125)
35 PF01903 CbiX: CbiX; InterPro 86.4 0.081 1.8E-06 40.6 -2.4 41 44-94 58-98 (105)
36 PRK05782 bifunctional sirohydr 81.8 0.28 6E-06 46.7 -1.4 64 40-116 67-131 (335)
37 PRK00923 sirohydrochlorin coba 78.2 0.66 1.4E-05 37.0 -0.1 44 41-94 64-114 (126)
38 KOG1321 Protoheme ferro-lyase 78.1 20 0.00043 34.5 9.6 109 131-243 97-214 (395)
39 cd06353 PBP1_BmpA_Med_like Per 75.7 26 0.00057 31.2 9.5 89 128-231 3-94 (258)
40 PF02608 Bmp: Basic membrane p 69.5 67 0.0014 29.4 10.8 90 129-230 4-97 (306)
41 COG1744 Med Uncharacterized AB 58.1 1.4E+02 0.0031 28.3 11.0 95 124-229 33-132 (345)
42 cd03414 CbiX_SirB_C Sirohydroc 57.6 1.3 2.7E-05 34.6 -2.5 39 44-94 66-104 (117)
43 COG4837 Uncharacterized protei 54.4 65 0.0014 25.8 6.7 66 139-204 23-88 (106)
44 cd03416 CbiX_SirB_N Sirohydroc 48.7 7 0.00015 29.6 0.4 28 42-69 63-90 (101)
45 PF01012 ETF: Electron transfe 47.4 1.6E+02 0.0034 24.1 9.3 109 129-243 3-114 (164)
46 KOG1321 Protoheme ferro-lyase 47.0 85 0.0018 30.4 7.4 106 125-234 226-349 (395)
47 PF07315 DUF1462: Protein of u 45.6 32 0.00069 27.2 3.7 69 139-207 16-84 (93)
48 PF01422 zf-NF-X1: NF-X1 type 44.4 11 0.00023 21.8 0.7 9 22-30 7-15 (20)
49 cd01837 SGNH_plant_lipase_like 41.9 34 0.00073 31.2 3.9 55 172-226 165-242 (315)
50 PRK06091 membrane protein FdrA 39.5 4.4E+02 0.0096 27.1 12.1 134 87-239 385-552 (555)
51 PRK00129 upp uracil phosphorib 36.9 91 0.002 27.2 5.7 43 172-223 139-181 (209)
52 PLN02428 lipoic acid synthase 36.5 4E+02 0.0086 25.6 11.4 98 140-239 163-269 (349)
53 cd00006 PTS_IIA_man PTS_IIA, P 32.9 1.2E+02 0.0025 23.9 5.3 22 128-153 2-23 (122)
54 TIGR01091 upp uracil phosphori 32.6 1E+02 0.0022 26.9 5.3 44 172-224 137-180 (207)
55 TIGR03100 hydr1_PEP hydrolase, 32.6 2.5E+02 0.0055 24.8 8.0 67 126-193 26-107 (274)
56 cd01846 fatty_acyltransferase_ 32.4 98 0.0021 27.1 5.2 54 172-225 132-204 (270)
57 PF03610 EIIA-man: PTS system 32.3 2.3E+02 0.0049 21.9 6.8 70 128-201 1-72 (116)
58 PF10137 TIR-like: Predicted n 31.8 2.5E+02 0.0053 23.0 7.1 55 130-190 2-56 (125)
59 smart00438 ZnF_NFX Repressor o 31.0 23 0.00051 21.7 0.7 10 22-31 7-16 (26)
60 PF13458 Peripla_BP_6: Peripla 30.0 3.9E+02 0.0084 23.6 10.7 78 127-215 136-213 (343)
61 COG1964 Predicted Fe-S oxidore 28.9 3.2E+02 0.0069 27.5 8.4 70 142-217 93-166 (475)
62 cd03174 DRE_TIM_metallolyase D 28.6 3.9E+02 0.0085 23.2 8.5 70 145-219 117-191 (265)
63 PRK08444 hypothetical protein; 28.4 3.7E+02 0.008 25.6 8.7 76 143-223 27-133 (353)
64 PF12695 Abhydrolase_5: Alpha/ 27.9 1.7E+02 0.0037 22.1 5.3 62 129-193 1-68 (145)
65 PRK15381 pathogenicity island 26.7 1.3E+02 0.0028 29.5 5.4 54 173-226 263-333 (408)
66 cd06321 PBP1_ABC_sugar_binding 26.2 2.7E+02 0.0058 23.7 6.8 16 176-191 49-64 (271)
67 TIGR02990 ectoine_eutA ectoine 26.1 3E+02 0.0064 24.8 7.2 66 146-228 89-155 (239)
68 cd06312 PBP1_ABC_sugar_binding 26.0 2.9E+02 0.0064 23.6 7.0 57 134-192 7-65 (271)
69 PF14606 Lipase_GDSL_3: GDSL-l 25.8 2.4E+02 0.0053 24.5 6.4 75 153-229 29-104 (178)
70 PRK13604 luxD acyl transferase 25.8 3.2E+02 0.007 25.8 7.6 66 125-193 35-115 (307)
71 PRK00103 rRNA large subunit me 24.9 4.3E+02 0.0092 22.4 8.1 40 195-234 74-115 (157)
72 COG2185 Sbm Methylmalonyl-CoA 24.8 4.3E+02 0.0093 22.4 10.1 94 126-230 12-106 (143)
73 COG4750 LicC CTP:phosphocholin 24.4 2.3E+02 0.0051 25.7 6.0 45 169-224 30-74 (231)
74 COG0540 PyrB Aspartate carbamo 24.2 36 0.00079 32.4 1.0 17 25-41 269-285 (316)
75 cd04824 eu_ALAD_PBGS_cysteine_ 23.6 2E+02 0.0044 27.5 5.8 50 172-221 52-110 (320)
76 cd06283 PBP1_RegR_EndR_KdgR_li 23.3 3.9E+02 0.0084 22.4 7.2 54 137-192 10-63 (267)
77 PRK05926 hypothetical protein; 23.1 6.7E+02 0.015 24.0 10.4 86 127-215 116-219 (370)
78 COG0107 HisF Imidazoleglycerol 23.1 1.8E+02 0.0038 27.0 5.1 87 145-245 32-123 (256)
79 PF13407 Peripla_BP_4: Peripla 22.7 2.7E+02 0.0059 23.5 6.2 61 131-193 3-64 (257)
80 cd06275 PBP1_PurR Ligand-bindi 22.2 4.8E+02 0.01 22.0 7.9 57 135-193 8-64 (269)
81 cd06301 PBP1_rhizopine_binding 21.9 4.1E+02 0.0089 22.5 7.1 57 136-193 9-65 (272)
82 cd06274 PBP1_FruR Ligand bindi 21.8 4.9E+02 0.011 21.9 7.7 56 136-193 9-64 (264)
83 PF07203 DUF1412: Protein of u 21.7 41 0.00089 23.8 0.6 15 16-30 32-46 (53)
84 cd06277 PBP1_LacI_like_1 Ligan 21.5 5E+02 0.011 21.9 7.6 55 136-192 12-66 (268)
85 PRK10785 maltodextrin glucosid 21.1 1.9E+02 0.0041 29.4 5.5 29 172-200 180-208 (598)
86 TIGR02637 RhaS rhamnose ABC tr 20.9 2.9E+02 0.0062 24.2 6.1 16 177-192 49-64 (302)
87 PRK09057 coproporphyrinogen II 20.2 2.5E+02 0.0055 26.6 5.9 95 127-223 56-160 (380)
88 PRK13660 hypothetical protein; 20.0 2.5E+02 0.0053 24.6 5.3 9 175-183 60-68 (182)
No 1
>PLN02757 sirohydrochlorine ferrochelatase
Probab=99.97 E-value=2.5e-30 Score=217.66 Aligned_cols=127 Identities=72% Similarity=1.167 Sum_probs=121.2
Q ss_pred cCCCCCCCCCcEEEEEeCCCCCchhHHHHHHHHHHHHHHcCCceEEEEEeccCCCCHHHHHHHHHHcCCCeEEEeeeccc
Q 025917 117 SSSRDGVGDKDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLF 196 (246)
Q Consensus 117 ~~~~~~~~~~~aLLLVgHGSr~pean~~l~~lA~~L~~r~~~~~V~vAFLE~~~PsL~eaLe~L~~qG~~rVvVVPlFL~ 196 (246)
|||.-+++++.+||||+|||+++++|+.+++++++++++.++..|++||+|+++|+++++++++.++|+++|+|+||||+
T Consensus 4 ~~~~~~~~~~~~lllvgHGSrd~~a~~~~~~la~~l~~~~~~~~V~~aFle~~~Psl~eal~~l~~~g~~~vvVvP~FL~ 83 (154)
T PLN02757 4 GGNGNGVGDKDGVVIVDHGSRRKESNLMLEEFVAMYKQKTGHPIVEPAHMELAEPSIKDAFGRCVEQGASRVIVSPFFLS 83 (154)
T ss_pred ccCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHhhCCCCcEEEEEEecCCCCHHHHHHHHHHCCCCEEEEEEhhhc
Confidence 55777888899999999999999999999999999999888888999999999999999999999999999999999999
Q ss_pred CcccccccHHHHHHHHHHhCCCceEEEcCCCCCChHHHHHHHHHHhcC
Q 025917 197 PGRHWCQDIPSLTAEAAKEHPGVPYIVTAPLGLHEQLVVNNFVLSFAR 244 (246)
Q Consensus 197 ~G~Hv~~DIp~~l~~~~~~~Pgv~I~va~PLG~~p~Lva~ll~~Ry~~ 244 (246)
+|.|+++|||++++.++++||+++|++++|||.||.|+ +++.+|+.+
T Consensus 84 ~G~H~~~DIp~~v~~~~~~~p~~~i~~~~pLG~~p~l~-~ll~~Ri~e 130 (154)
T PLN02757 84 PGRHWQEDIPALTAEAAKEHPGVKYLVTAPIGLHELMV-DVVNDRIKY 130 (154)
T ss_pred CCcchHhHHHHHHHHHHHHCCCcEEEECCCCCCCHHHH-HHHHHHHHH
Confidence 99999999999999999999999999999999999986 999999975
No 2
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=99.95 E-value=1.7e-27 Score=191.74 Aligned_cols=118 Identities=30% Similarity=0.508 Sum_probs=111.9
Q ss_pred CcEEEEEeCCCCCchhHHHHHHHHHHHHHHcCCceEEEEEeccCCCCHHHHHHHHHHcCCCeEEEeeecccCcccccccH
Q 025917 126 KDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQDI 205 (246)
Q Consensus 126 ~~aLLLVgHGSr~pean~~l~~lA~~L~~r~~~~~V~vAFLE~~~PsL~eaLe~L~~qG~~rVvVVPlFL~~G~Hv~~DI 205 (246)
++++||++|||++++++..++++++.++++.++..|++||+|.++|++++++++|.++|+++|+|+||||++|.|+++||
T Consensus 1 ~~~lvlv~hGS~~~~~~~~~~~~~~~l~~~~~~~~v~~afle~~~P~l~~~l~~l~~~g~~~v~vvPlfl~~G~h~~~di 80 (126)
T PRK00923 1 MLGLLLVGHGSRLPYNKEVVTKIAEKIKEKHPFYIVEVGFMEFNEPTIPEALKKLIGTGADKIIVVPVFLAHGVHTKRDI 80 (126)
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHHhCCCCeEEEEEEEcCCCCHHHHHHHHHHcCCCEEEEEchhhccCccccccc
Confidence 36899999999999999999999999999988889999999999999999999999999999999999999999999999
Q ss_pred HHHHH-------HHHHhCCCceEEEcCCCCCChHHHHHHHHHHhcC
Q 025917 206 PSLTA-------EAAKEHPGVPYIVTAPLGLHEQLVVNNFVLSFAR 244 (246)
Q Consensus 206 p~~l~-------~~~~~~Pgv~I~va~PLG~~p~Lva~ll~~Ry~~ 244 (246)
|..++ .+++.+|+++|++++|||.||.|+ +++.+|+++
T Consensus 81 p~~~~~~~~~~~~~~~~~~~~~i~~~~~lG~~p~l~-~~~~~r~~e 125 (126)
T PRK00923 81 PRILGLDEGEKEEIEEDGKDVEIVYAEPLGADERIA-DIVLKRANE 125 (126)
T ss_pred chhhhcccccccchhhcCCCeEEEEcCCCCCCHHHH-HHHHHHHhh
Confidence 99887 677889999999999999999986 999999875
No 3
>cd03415 CbiX_CbiC Archaeal sirohydrochlorin cobalt chelatase (CbiX) single domain. Proteins in this subgroup contain a single CbiX domain N-terminal to a precorrin-8X methylmutase (CbiC) domain. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, while CbiC catalyzes the conversion of cobalt-precorrin 8 to cobyrinic acid by methyl rearrangement. Both CbiX and CbiC are involved in vitamin B12 biosynthesis.
Probab=99.95 E-value=2.1e-27 Score=193.86 Aligned_cols=116 Identities=26% Similarity=0.348 Sum_probs=105.7
Q ss_pred cEEEEEeCCCCCchhHHHHHHHHHHHHHHcCCceEEEEEeccCCCCHHHHHHHHHHcCCCeEEEeeecccCcccccccHH
Q 025917 127 DGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQDIP 206 (246)
Q Consensus 127 ~aLLLVgHGSr~pean~~l~~lA~~L~~r~~~~~V~vAFLE~~~PsL~eaLe~L~~qG~~rVvVVPlFL~~G~Hv~~DIp 206 (246)
++|||+||||+++++++.+++++++++++.+ .+|++||+|+++|++++++++|.++|+++|+|+||||+.|.|+++|||
T Consensus 1 ~~lllvgHGSR~~~~~~~~~~la~~l~~~~~-~~v~~afle~~~P~l~~~l~~l~~~G~~~ivVvPlFL~~G~Hv~~DiP 79 (125)
T cd03415 1 TAIIIITHGSRRNTFNEDMEEWAAYLERKLG-VPVYLTYNEYAEPNWRDLLNELLSEGYGHIIIALAFLGRGNHVARDIM 79 (125)
T ss_pred CEEEEEecCCCChHHHHHHHHHHHHHHhccC-CceEEEEeecCCCCHHHHHHHHHHCCCCEEEEehhhccCCcchHHHHH
Confidence 5899999999999999999999999997644 569999999999999999999999999999999999999999999999
Q ss_pred HHHHHH------HHhC--CCceEEEcCCCCCChHHHHHHHHHHhcC
Q 025917 207 SLTAEA------AKEH--PGVPYIVTAPLGLHEQLVVNNFVLSFAR 244 (246)
Q Consensus 207 ~~l~~~------~~~~--Pgv~I~va~PLG~~p~Lva~ll~~Ry~~ 244 (246)
+.++.. +.+| ++++|++++|||.||.|+ +++.+|..+
T Consensus 80 ~~l~~~~~~~~~~~~~~~~~~~i~~~~pLG~~p~l~-~~l~~r~~~ 124 (125)
T cd03415 80 GELGVSRFYKWVMSKYGGKEILVYVTEPLADSPLVK-LALFYRVKR 124 (125)
T ss_pred HHHHhhcccchhhhccCCCCceEEEeCCCCCCHHHH-HHHHHHHHh
Confidence 999873 2344 678899999999999986 999999865
No 4
>cd03414 CbiX_SirB_C Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), C-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both CbiX and SirB are found in a wide range of bacteria.
Probab=99.94 E-value=3.2e-26 Score=181.22 Aligned_cols=116 Identities=30% Similarity=0.537 Sum_probs=109.7
Q ss_pred cEEEEEeCCCCCchhHHHHHHHHHHHHHHcCCceEEEEEeccCCCCHHHHHHHHHHcCCCeEEEeeecccCcccccccHH
Q 025917 127 DGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQDIP 206 (246)
Q Consensus 127 ~aLLLVgHGSr~pean~~l~~lA~~L~~r~~~~~V~vAFLE~~~PsL~eaLe~L~~qG~~rVvVVPlFL~~G~Hv~~DIp 206 (246)
+++||++|||+++++++.+++++++++++.++..|++||+|..+|++++++++|.++|+++|+|+||||++|.|+ +||+
T Consensus 1 ~a~llv~HGS~~~~~~~~~~~l~~~l~~~~~~~~v~~afle~~~P~~~~~l~~l~~~g~~~i~vvP~fL~~G~h~-~~i~ 79 (117)
T cd03414 1 TAVVLVGRGSSDPDANADVAKIARLLEEGTGFARVETAFAAATRPSLPEALERLRALGARRVVVLPYLLFTGVLM-DRIE 79 (117)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCHHHHHHHHHHcCCCEEEEEechhcCCchH-HHHH
Confidence 479999999999999999999999999998888999999999899999999999999999999999999999998 5899
Q ss_pred HHHHHHHHhCCCceEEEcCCCCCChHHHHHHHHHHhcCC
Q 025917 207 SLTAEAAKEHPGVPYIVTAPLGLHEQLVVNNFVLSFARP 245 (246)
Q Consensus 207 ~~l~~~~~~~Pgv~I~va~PLG~~p~Lva~ll~~Ry~~~ 245 (246)
+.+++++.+ |+.+|.+++|||.||.|+ +++.+|+++-
T Consensus 80 ~~~~~~~~~-~~~~i~~~~pLG~~~~l~-~~l~~r~~~~ 116 (117)
T cd03414 80 EQVAELAAE-PGIEFVLAPPLGPHPELA-EALLERVREA 116 (117)
T ss_pred HHHHHHHhC-CCceEEECCCCCCCHHHH-HHHHHHHHhh
Confidence 999999988 999999999999999986 9999999863
No 5
>PRK02395 hypothetical protein; Provisional
Probab=99.93 E-value=1e-25 Score=204.65 Aligned_cols=186 Identities=21% Similarity=0.286 Sum_probs=142.8
Q ss_pred HHHHHHHHhhcccCCCCCccchHHhhc----cChhhhcCCCceeeeeeccCccCCCCCCCCCCCCccccCCCCccccccc
Q 025917 40 IALILCKITSSLHKPSETPNSWKADQN----MSVESLALSPQFTVKRCSIGEVGTKNPIWVHPNSLNFQRGPSRTKHLSI 115 (246)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~p~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~ 115 (246)
|.++=.+|+.++|.+.|||+.+..+.+ +.+...... ..++. +. .++|. ||. +. .....|+.+
T Consensus 60 ivVvPlfL~~G~Hv~~DIP~~l~~~~~~~~~~~~~~~~~~-~~~i~-~~-~plG~-~p~-----l~-----~~l~~ri~e 125 (279)
T PRK02395 60 VYVVPLFISEGYFTEQVIPRELGLGHDGPVADRGTLRALD-GKTVH-YT-GPVGT-HPA-----MA-----DVIAARARS 125 (279)
T ss_pred EEEEeeEeccccchhhhhHHHhcCCcCCccccccccccCC-CceEE-eC-CCCCC-ChH-----HH-----HHHHHHHHH
Confidence 334445679999999999999986432 222111111 33444 33 58999 887 77 333445555
Q ss_pred ccCCCCCCCCCcEEEEEeCCCCC-chhHHHHHHHHHHHHHHcCCceEEEEEeccCCCCHHHHHHHHHHcCCCeEEEeeec
Q 025917 116 KSSSRDGVGDKDGVIIVDHGSRR-RESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFF 194 (246)
Q Consensus 116 ~~~~~~~~~~~~aLLLVgHGSr~-pean~~l~~lA~~L~~r~~~~~V~vAFLE~~~PsL~eaLe~L~~qG~~rVvVVPlF 194 (246)
+. ...+...++++|||+|||++ +.+|..++.+++.++++.++..|++||+| ..|+++++++.+. .++|+|+|||
T Consensus 126 ~~-~~~~~~~~~alvlvgHGS~~~~~a~~~~~~~a~~l~~~~~~~~V~~~fle-~~P~l~~~l~~l~---~~~V~vvP~f 200 (279)
T PRK02395 126 VT-GDPDVGEDTALAVVGHGTERNENSAKAIYYHADRLRERGRFAEVEALFLD-EEPEVDDWPDLFE---ADDVVVVPLF 200 (279)
T ss_pred hh-cCCCCCcCceEEEEecCCCCchhHHHHHHHHHHHHHhhCCCCeEEEEecc-CCCCHHHHHHHhC---CCeEEEEeee
Confidence 43 22233467899999999996 56899999999999988888889999999 7899999998763 5899999999
Q ss_pred ccCcccccccHHHHHHHHHH-----hCC----CceEEEcCCCCCChHHHHHHHHHHhcCC
Q 025917 195 LFPGRHWCQDIPSLTAEAAK-----EHP----GVPYIVTAPLGLHEQLVVNNFVLSFARP 245 (246)
Q Consensus 195 L~~G~Hv~~DIp~~l~~~~~-----~~P----gv~I~va~PLG~~p~Lva~ll~~Ry~~~ 245 (246)
|++|.|+++|||+.++..+. ++| +++|.+++|||.||.|+ +++.+|+++.
T Consensus 201 L~~G~H~~~DIp~~~~~~~~~~~g~~~~~~~~~~~i~~~~~LG~~p~l~-~i~~~R~~ea 259 (279)
T PRK02395 201 IADGFHTQEDIPEDMGLTDDYRTGYDVPTAVDGHRIWYAGAVGTEPLMA-DVILERAADA 259 (279)
T ss_pred cccCcchHhHHHHHHHHhhccccccCCCcccCCeeEEEecCCCCCHHHH-HHHHHHHHHh
Confidence 99999999999998876643 467 78999999999999986 9999999863
No 6
>PF01903 CbiX: CbiX; InterPro: IPR002762 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the CbiX protein, which functions as a cobalt-chelatase in the anaerobic biosynthesis of cobalamin. It catalyses the insertion of cobalt into sirohydrochlorin. The structure of CbiX from Archaeoglobus fulgidus consists of a central mixed beta-sheet flanked by four alpha-helices, although it is about half the size of other Class II tetrapyrrole chelatases []. The CbiX proteins found in archaea appear to be shorter than those found in eubacteria [].; GO: 0016829 lyase activity, 0046872 metal ion binding, 0009236 cobalamin biosynthetic process; PDB: 2XWQ_C 2DJ5_A 1TJN_A 2XWS_A 3LYH_B 2JH3_D.
Probab=99.92 E-value=8.3e-26 Score=175.51 Aligned_cols=105 Identities=44% Similarity=0.702 Sum_probs=97.2
Q ss_pred CCCCCchhHHHHHHHHHHHHHHcCCceEEEEEeccCCCCHHHHHHHHHHcCCCeEEEeeecccCcccccccHHHHHHHHH
Q 025917 134 HGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQDIPSLTAEAA 213 (246)
Q Consensus 134 HGSr~pean~~l~~lA~~L~~r~~~~~V~vAFLE~~~PsL~eaLe~L~~qG~~rVvVVPlFL~~G~Hv~~DIp~~l~~~~ 213 (246)
|||++++++..+++++++++++.+ ..|++||+|.++|++++++++|.++|+++|+|+||||++|.|+++|||+.++.++
T Consensus 1 HGSr~~~~~~~~~~la~~l~~~~~-~~v~~~fle~~~P~l~~~l~~l~~~g~~~ivvvP~fL~~G~h~~~DIp~~l~~~~ 79 (105)
T PF01903_consen 1 HGSRDPEANAELEDLADRLRERLP-VPVEVAFLEFAEPSLEEALERLVAQGARRIVVVPYFLFPGYHVKRDIPEALAEAR 79 (105)
T ss_dssp -STSSCHHHHHHHHHHHHHHHHTS-SEEEEEESSCCCSCCHHCCHHHHCCTCSEEEEEEESSSSSHHHHCHHHHHHCHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhhcC-CeEEEEEEecCCCCHHHHHHHHHHcCCCeEEEEeeeecCccchHhHHHHHHHHHH
Confidence 999999999999999999999999 8999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCceEEEcCCCCCChHHHHHHHHH
Q 025917 214 KEHPGVPYIVTAPLGLHEQLVVNNFVL 240 (246)
Q Consensus 214 ~~~Pgv~I~va~PLG~~p~Lva~ll~~ 240 (246)
.++|+++|++++|||.||.|+ +++.|
T Consensus 80 ~~~~~~~v~~~~pLG~~p~l~-~~l~e 105 (105)
T PF01903_consen 80 ERHPGIEVRVAPPLGPHPLLA-ELLAE 105 (105)
T ss_dssp HCSTTEEEEE---GGGSCCHH-HHHH-
T ss_pred hhCCceEEEECCCCCCCHHHH-HHHhC
Confidence 999999999999999999986 88764
No 7
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=99.92 E-value=3.6e-24 Score=165.71 Aligned_cols=101 Identities=40% Similarity=0.616 Sum_probs=97.9
Q ss_pred EEEEEeCCCCCchhHHHHHHHHHHHHHHcCCceEEEEEeccCCCCHHHHHHHHHHcCCCeEEEeeecccCcccccccHHH
Q 025917 128 GVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQDIPS 207 (246)
Q Consensus 128 aLLLVgHGSr~pean~~l~~lA~~L~~r~~~~~V~vAFLE~~~PsL~eaLe~L~~qG~~rVvVVPlFL~~G~Hv~~DIp~ 207 (246)
++||++|||++++++..+++++++++++.++..|++||+|..+|+++++++++.++|+++|+|+||||++|.|+++|||+
T Consensus 1 ~ivlv~hGS~~~~~~~~~~~l~~~l~~~~~~~~v~~afle~~~p~~~~~l~~l~~~g~~~v~vvPlfl~~G~h~~~dip~ 80 (101)
T cd03416 1 ALLLVGHGSRDPRAAEALEALAERLRERLPGDEVELAFLELAEPSLAEALDELAAQGATRIVVVPLFLLAGGHVKEDIPA 80 (101)
T ss_pred CEEEEEcCCCCHHHHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCCHHHHHHHHHHcCCCEEEEEeeEeCCCccccccHHH
Confidence 58999999999999999999999999999888999999998899999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCceEEEcCCCC
Q 025917 208 LTAEAAKEHPGVPYIVTAPLG 228 (246)
Q Consensus 208 ~l~~~~~~~Pgv~I~va~PLG 228 (246)
.++.+++++|++++++++|||
T Consensus 81 ~~~~~~~~~~~~~i~~~~plG 101 (101)
T cd03416 81 ALAAARARHPGVRIRYAPPLG 101 (101)
T ss_pred HHHHHHHHCCCeEEEecCCCC
Confidence 999999999999999999998
No 8
>PRK05782 bifunctional sirohydrochlorin cobalt chelatase/precorrin-8X methylmutase; Validated
Probab=99.91 E-value=2.6e-24 Score=200.85 Aligned_cols=120 Identities=27% Similarity=0.376 Sum_probs=108.5
Q ss_pred CCCCcEEEEEeCCCCCchhHHHHHHHHHHHHHHcCCceEEEEEeccCCCCHHHHHHHHHHcCCCeEEEeeecccCccccc
Q 025917 123 VGDKDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWC 202 (246)
Q Consensus 123 ~~~~~aLLLVgHGSr~pean~~l~~lA~~L~~r~~~~~V~vAFLE~~~PsL~eaLe~L~~qG~~rVvVVPlFL~~G~Hv~ 202 (246)
+.+++++||++||||++++++.+++++++++++.+. .|++||+|+++|++++++++|.++|+++|+|+||||++|.|++
T Consensus 3 ~~~~~aiLLvgHGSRdp~~~~~~~~La~~l~~~~~~-~V~~aFLE~~ePsl~eal~~l~~~G~~~IvVvPlFL~~G~Hv~ 81 (335)
T PRK05782 3 RQSNTAIILIGHGSRRETFNSDMEGMANYLKEKLGV-PIYLTYNEFAEPNWRSLLNEIIKEGYRRVIIALAFLGRGNHVF 81 (335)
T ss_pred CCCCceEEEEecCCCChHHHHHHHHHHHHHHhccCC-ceEEEEeccCCCCHHHHHHHHHHCCCCEEEEecccccCCcchh
Confidence 446789999999999999999999999999987554 6999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHH--H----HhCCC--ceEEEcCCCCCChHHHHHHHHHHhcC
Q 025917 203 QDIPSLTAEA--A----KEHPG--VPYIVTAPLGLHEQLVVNNFVLSFAR 244 (246)
Q Consensus 203 ~DIp~~l~~~--~----~~~Pg--v~I~va~PLG~~p~Lva~ll~~Ry~~ 244 (246)
+|||+.++.. + ++||+ ++|++++|||.||.|+ +++.+|..+
T Consensus 82 ~DIP~~L~~~~~~~~~~~~~~~~~i~i~l~~pLG~~p~l~-~ll~~Rv~e 130 (335)
T PRK05782 82 RDIMGELGVQRLNSWEVSKISGKEVEFYVTEPLSDSPLVG-LALYYRLAR 130 (335)
T ss_pred hhHHHHHHHhhhcchhhhhcCCCceeEEECCCCCCChHHH-HHHHHHHHH
Confidence 9999999853 2 55554 7789999999999987 999999865
No 9
>PRK02395 hypothetical protein; Provisional
Probab=99.85 E-value=2.5e-21 Score=175.92 Aligned_cols=113 Identities=21% Similarity=0.312 Sum_probs=101.4
Q ss_pred cEEEEEeCCC-CCchhHHHHHHHHHHHHHHcCCceEEEEEeccCCCCHHHHHHHHHHcCCCeEEEeeecccCcccccccH
Q 025917 127 DGVIIVDHGS-RRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQDI 205 (246)
Q Consensus 127 ~aLLLVgHGS-r~pean~~l~~lA~~L~~r~~~~~V~vAFLE~~~PsL~eaLe~L~~qG~~rVvVVPlFL~~G~Hv~~DI 205 (246)
.+|||+|||| +++++++.++.++++++++.++..|++||+| ++|+++++++++. .++|+|+||||++|.|+++||
T Consensus 2 ~~lllvgHGSrr~~~~~~~~~~la~~l~~~~~~~~v~~~fle-~~P~l~~~l~~l~---~~~ivVvPlfL~~G~Hv~~DI 77 (279)
T PRK02395 2 QALVLVGHGSHLNPDSALPTYAHAETIRARGLFDEVREGFWK-EEPSLRQVLRTVE---SDEVYVVPLFISEGYFTEQVI 77 (279)
T ss_pred ceEEEEeCCCCCCcchHHHHHHHHHHHHhcCCCCeEEEeecc-CCCCHHHHHHhcC---cCcEEEEeeEeccccchhhhh
Confidence 6899999999 5889999999999999999898899999999 9999999999874 589999999999999999999
Q ss_pred HHHHHHH----HHhCC------CceEEEcCCCCCChHHHHHHHHHHhcC
Q 025917 206 PSLTAEA----AKEHP------GVPYIVTAPLGLHEQLVVNNFVLSFAR 244 (246)
Q Consensus 206 p~~l~~~----~~~~P------gv~I~va~PLG~~p~Lva~ll~~Ry~~ 244 (246)
|+.++.. ..++| +++|.+++|||.||.|+ +++.+|..+
T Consensus 78 P~~l~~~~~~~~~~~~~~~~~~~~~i~~~~plG~~p~l~-~~l~~ri~e 125 (279)
T PRK02395 78 PRELGLGHDGPVADRGTLRALDGKTVHYTGPVGTHPAMA-DVIAARARS 125 (279)
T ss_pred HHHhcCCcCCccccccccccCCCceEEeCCCCCCChHHH-HHHHHHHHH
Confidence 9999752 22334 89999999999999986 999998764
No 10
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=99.85 E-value=1.6e-20 Score=152.91 Aligned_cols=105 Identities=13% Similarity=0.171 Sum_probs=98.9
Q ss_pred cEEEEEeCCCCCchhHHHHHHHHHHHHHHcCCceEEEEEec-----------cCCCCHHHHHHHHHHcCCCeEEEeeecc
Q 025917 127 DGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHME-----------LAEPSIKDAFGSCVQQGANRVIVSPFFL 195 (246)
Q Consensus 127 ~aLLLVgHGSr~pean~~l~~lA~~L~~r~~~~~V~vAFLE-----------~~~PsL~eaLe~L~~qG~~rVvVVPlFL 195 (246)
++|||++|||+++++++.+..+++++++++|...|+.||++ ...|++.+++++|.++|+++|+|+|+||
T Consensus 1 ~aillv~fGS~~~~~~~~~~~i~~~l~~~~p~~~V~~afts~~i~~~l~~~~~~~p~~~eaL~~l~~~G~~~V~V~Pl~l 80 (127)
T cd03412 1 KAILLVSFGTSYPTAEKTIDAIEDKVRAAFPDYEVRWAFTSRMIRKKLKKRGIEVDTPEEALAKLAADGYTEVIVQSLHI 80 (127)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHHHHCCCCeEEEEecHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCEEEEEeCee
Confidence 48999999999999999999999999999999999999996 4589999999999999999999999999
Q ss_pred cCcccccccHHHHHHHHHHhCCCceEEEcCCCCCChHHH
Q 025917 196 FPGRHWCQDIPSLTAEAAKEHPGVPYIVTAPLGLHEQLV 234 (246)
Q Consensus 196 ~~G~Hv~~DIp~~l~~~~~~~Pgv~I~va~PLG~~p~Lv 234 (246)
++|.|+ +||++.++.++ +|..+|.+++||+.++...
T Consensus 81 ~~G~e~-~di~~~v~~~~--~~~~~i~~g~pLl~~~~d~ 116 (127)
T cd03412 81 IPGEEY-EKLKREVDAFK--KGFKKIKLGRPLLYSPEDY 116 (127)
T ss_pred ECcHHH-HHHHHHHHHHh--CCCceEEEccCCCCCHHHH
Confidence 999997 79999999887 7889999999999999876
No 11
>COG2138 Sirohydrochlorin ferrochelatase [Inorganic ion transport and metabolism]
Probab=99.81 E-value=7.6e-20 Score=164.50 Aligned_cols=113 Identities=32% Similarity=0.532 Sum_probs=106.1
Q ss_pred CcEEEEEeCCCCCchhHHHHHHHHHHHHHHcCCceEEEEEeccCCCCHHHHHHHHHHcCCCeEEEeeecccCcccccccH
Q 025917 126 KDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQDI 205 (246)
Q Consensus 126 ~~aLLLVgHGSr~pean~~l~~lA~~L~~r~~~~~V~vAFLE~~~PsL~eaLe~L~~qG~~rVvVVPlFL~~G~Hv~~DI 205 (246)
..++|+++|||+.+.+++.++.++.+++++..+..|+.+|+|...|+++++++.|..+|+++|+|||+||+.|+|+++||
T Consensus 2 ~~~~llvgHGsr~p~~~~~~~~~a~~~~~~~~~~~v~~~f~e~~~P~l~~~~~al~~~G~~~ivvVPlfl~~g~H~~~DI 81 (245)
T COG2138 2 MPALLLVGHGSRLPRGREVAEAIAARLEERGDFPPVRVAFLELAEPSLREALQALVARGVDRIVVVPLFLAAGYHTKRDI 81 (245)
T ss_pred CcceeeeecCCCCccHHHHHHHHHHHHHhhcCCccchhHHHHhcCCCHHHHHHHHHhcCCCeEEEeehhhccCchhhccc
Confidence 46899999999999999999999999999999889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCceEEEcCCCCCChHHHHHHHHHHh
Q 025917 206 PSLTAEAAKEHPGVPYIVTAPLGLHEQLVVNNFVLSF 242 (246)
Q Consensus 206 p~~l~~~~~~~Pgv~I~va~PLG~~p~Lva~ll~~Ry 242 (246)
|+.+...+.++++.... |+|.|+.++ +++.+|.
T Consensus 82 P~~L~~~~~~~~~~~~~---p~G~~~~~~-~~~~~r~ 114 (245)
T COG2138 82 PAELGLARQAHPQVDLS---PLGTHPAVL-DLLGQRL 114 (245)
T ss_pred HHHHHHhhhcCCccccc---ccCCchHHH-HHHHHHH
Confidence 99999999999986554 999999987 8888874
No 12
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=99.75 E-value=2.7e-18 Score=135.72 Aligned_cols=86 Identities=20% Similarity=0.336 Sum_probs=77.4
Q ss_pred cEEEEEeCCCCCchhHHHHHHHHHHHHHHcCCceEEEEEeccCCCCHHHHHHHHHHcCCCeEEEeeecccCcccccccHH
Q 025917 127 DGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQDIP 206 (246)
Q Consensus 127 ~aLLLVgHGSr~pean~~l~~lA~~L~~r~~~~~V~vAFLE~~~PsL~eaLe~L~~qG~~rVvVVPlFL~~G~Hv~~DIp 206 (246)
.++|||+|||++++ +..++.++++++++.+ ..|++||+| +.|+++++++++.++|+++|+++||||+.|.|+++|||
T Consensus 1 ~~illvgHGSr~~~-~~~~~~l~~~l~~~~~-~~v~~~~lE-~~P~i~~~l~~l~~~G~~~i~lvPl~L~~G~H~~~Dip 77 (103)
T cd03413 1 EAVVFMGHGTDHPS-NAVYAALEYVLREEDP-ANVFVGTVE-GYPGLDDVLAKLKKAGIKKVTLMPLMLVAGDHAHNDMA 77 (103)
T ss_pred CeEEEEECCCCchh-hhHHHHHHHHHHhcCC-CcEEEEEEc-CCCCHHHHHHHHHHcCCCEEEEEehhheecccchhcCC
Confidence 37999999999987 8999999999998866 689999999 89999999999999999999999999999999999999
Q ss_pred HH-HHHHHHh
Q 025917 207 SL-TAEAAKE 215 (246)
Q Consensus 207 ~~-l~~~~~~ 215 (246)
.. -+.|+.+
T Consensus 78 ge~~~SW~~~ 87 (103)
T cd03413 78 GDEPDSWKSI 87 (103)
T ss_pred CCCchhHHHH
Confidence 74 3455543
No 13
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=99.72 E-value=4.7e-17 Score=124.64 Aligned_cols=87 Identities=20% Similarity=0.229 Sum_probs=81.6
Q ss_pred EEEEEeCCCCCc-hhHHHHHHHHHHHHHHcCCceEEEEEeccCCCCHHHHHHHHHHcCCCeEEEeeecccCcccccccHH
Q 025917 128 GVIIVDHGSRRR-ESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQDIP 206 (246)
Q Consensus 128 aLLLVgHGSr~p-ean~~l~~lA~~L~~r~~~~~V~vAFLE~~~PsL~eaLe~L~~qG~~rVvVVPlFL~~G~Hv~~DIp 206 (246)
+||+++|||+++ ..+..++.++++++++.+...|.+||++...|++++++++|.++|+++|+|+|+|+++|.|+.+||+
T Consensus 1 ~lllv~HGs~~~s~~~~~~~~~~~~l~~~~~~~~v~~a~~~~~~P~i~~~l~~l~~~g~~~vvvvPl~~~~g~h~~~di~ 80 (101)
T cd03409 1 GLLVVGHGSPYKDPYKKDIEAQAHNLAESLPDFPYYVGFQSGLGPDTEEAIRELAEEGYQRVVIVPLAPVSGDEVFYDID 80 (101)
T ss_pred CEEEEECCCCCCccHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCeEEEEeCccccChhhHHHHH
Confidence 589999999998 8899999999999999888889999999769999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 025917 207 SLTAEAAK 214 (246)
Q Consensus 207 ~~l~~~~~ 214 (246)
..++....
T Consensus 81 ~~~~~~~~ 88 (101)
T cd03409 81 SEIGLVRK 88 (101)
T ss_pred HHHHHHHH
Confidence 99888765
No 14
>COG2138 Sirohydrochlorin ferrochelatase [Inorganic ion transport and metabolism]
Probab=99.67 E-value=4.8e-17 Score=146.43 Aligned_cols=189 Identities=20% Similarity=0.286 Sum_probs=148.2
Q ss_pred cCCCCccchhhchhh----HHHHHHHHhhcccCCCCCccchHHhhccChhhhcCCCceeeeeeccCccCCCCCCCCCCCC
Q 025917 25 CHPGPVNDIVSLSSS----IALILCKITSSLHKPSETPNSWKADQNMSVESLALSPQFTVKRCSIGEVGTKNPIWVHPNS 100 (246)
Q Consensus 25 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 100 (246)
+||-.-|-+-.+... |.++-.+|..++|.+.|||+.+..++.+.+ +.. ++ ++|+ ||.|++
T Consensus 45 ~~P~l~~~~~al~~~G~~~ivvVPlfl~~g~H~~~DIP~~L~~~~~~~~-------~~~---~~--p~G~-~~~~~~--- 108 (245)
T COG2138 45 AEPSLREALQALVARGVDRIVVVPLFLAAGYHTKRDIPAELGLARQAHP-------QVD---LS--PLGT-HPAVLD--- 108 (245)
T ss_pred cCCCHHHHHHHHHhcCCCeEEEeehhhccCchhhcccHHHHHHhhhcCC-------ccc---cc--ccCC-chHHHH---
Confidence 455333333333333 555667899999999999999999999988 331 22 8999 998544
Q ss_pred ccccCCCCcccccccccCCCCCCCCCcEEEEEeCCCCCchhHHHHHHHHHHHHHHc-CCceEEEEEeccCCCCHHHHHHH
Q 025917 101 LNFQRGPSRTKHLSIKSSSRDGVGDKDGVIIVDHGSRRRESNLMLKQFVAMFREKT-GYLIVEPAHMELAEPSIKDAFGS 179 (246)
Q Consensus 101 ~~~~~~~~~~~~l~~~~~~~~~~~~~~aLLLVgHGSr~pean~~l~~lA~~L~~r~-~~~~V~vAFLE~~~PsL~eaLe~ 179 (246)
...+|+.+.+ .... .....++++++||+++.+|..+..+++.+.+.. .+..+..+|....++++.+...+
T Consensus 109 -------~~~~r~~~~~-~~~~-~~~~~vv~~~~Gs~~~~~~~~~~~va~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 179 (245)
T COG2138 109 -------LLGQRLEDAG-ADEA-DDAERVVLEPRGSSDPIANAAVYRVARLLGEGTASWKAVITLFTGVAEPGLAGETAR 179 (245)
T ss_pred -------HHHHHHHHhc-cccc-cccceEEEeccCCCcccchhHHHHHHHHHHhccCCceeeeeeeccccCcchhhhhhh
Confidence 2245555444 2222 233459999999999999999999999998887 77789999999999999998877
Q ss_pred HHHcCCCeEEEeeecccCcccccccHHHHHHHHHHhCCCceEEEcCCCCCChHHHHHHHHHHhcC
Q 025917 180 CVQQGANRVIVSPFFLFPGRHWCQDIPSLTAEAAKEHPGVPYIVTAPLGLHEQLVVNNFVLSFAR 244 (246)
Q Consensus 180 L~~qG~~rVvVVPlFL~~G~Hv~~DIp~~l~~~~~~~Pgv~I~va~PLG~~p~Lva~ll~~Ry~~ 244 (246)
+. .++++|+||||+.|.+++++++... .+..++...+.+++|+|.+|.+. +++.+|+++
T Consensus 180 ~~---~~~~vv~P~fL~~G~l~~~~~~~~~--~~~~~~~~~i~~~~~lG~~p~l~-~~~~~r~~~ 238 (245)
T COG2138 180 LR---YRRVVVLPYFLFDGLLTDRIRPEVE--LRLAVPEGEIALARPLGTHPRLA-DAVLDRVRE 238 (245)
T ss_pred cc---cCcEEEEEhhHhCchhhhhhHHhhh--hhhccCCcceEecCcCCCCHHHH-HHHHHHHHH
Confidence 65 7999999999999999988776554 55667888999999999999976 999999875
No 15
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=99.29 E-value=3.2e-12 Score=116.26 Aligned_cols=117 Identities=21% Similarity=0.354 Sum_probs=84.7
Q ss_pred CCCcEEEEEeCCCCCchhHHHHHHHHHHHHHHcCCceEEEEEeccCCCCHHHHHHHHHHcCCCeEEEeeecccCcccccc
Q 025917 124 GDKDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQ 203 (246)
Q Consensus 124 ~~~~aLLLVgHGSr~pean~~l~~lA~~L~~r~~~~~V~vAFLE~~~PsL~eaLe~L~~qG~~rVvVVPlFL~~G~Hv~~ 203 (246)
.+++++|++||||.++ +|..+..+...+++. ++..|.+|.+| +.|++++.+++|.+.|+++|.++|||+..|.|+.+
T Consensus 139 ~~~~a~vlmGHGt~h~-an~~Y~~l~~~l~~~-~~~~v~vgtvE-G~P~~~~vi~~L~~~g~k~V~L~PlMlVAGdHa~n 215 (262)
T PF06180_consen 139 RKDEAVVLMGHGTPHP-ANAAYSALQAMLKKH-GYPNVFVGTVE-GYPSLEDVIARLKKKGIKKVHLIPLMLVAGDHAKN 215 (262)
T ss_dssp -TTEEEEEEE---SCH-HHHHHHHHHHHHHCC-T-TTEEEEETT-SSSBHHHHHHHHHHHT-SEEEEEEESSS--HHHHC
T ss_pred CCCCEEEEEeCCCCCC-ccHHHHHHHHHHHhC-CCCeEEEEEeC-CCCCHHHHHHHHHhcCCCeEEEEecccccchhhhh
Confidence 3789999999999886 678889999999874 55679999999 68999999999999999999999999999999999
Q ss_pred cHHH-HHHHHHHhC--CCceEE-EcCCCCCChHHHHHHHHHHhcC
Q 025917 204 DIPS-LTAEAAKEH--PGVPYI-VTAPLGLHEQLVVNNFVLSFAR 244 (246)
Q Consensus 204 DIp~-~l~~~~~~~--Pgv~I~-va~PLG~~p~Lva~ll~~Ry~~ 244 (246)
||.. .-+.|+.+. .|.++. +...||..|.+ ++++.++..+
T Consensus 216 DmaGde~dSWks~L~~~G~~v~~~l~GLGE~~~i-~~ifi~hl~~ 259 (262)
T PF06180_consen 216 DMAGDEEDSWKSRLEAAGFEVTCVLKGLGEYPAI-QQIFIEHLKE 259 (262)
T ss_dssp CCCSSSTTSHHHHHHHTT-EEEE----GGGSHHH-HHHHHHHHHH
T ss_pred hhcCCCcchHHHHHHHCCCEEEEEeccCcCCHHH-HHHHHHHHHH
Confidence 9954 112333321 244444 58999999996 5999988653
No 16
>PRK00035 hemH ferrochelatase; Reviewed
Probab=99.17 E-value=1.3e-10 Score=107.76 Aligned_cols=174 Identities=13% Similarity=0.122 Sum_probs=115.5
Q ss_pred hcccCCCCCccchHHhhccChhhhcCCCceeeeeeccCccCCCCCCCCCCCCccccCCCCcccccccccC-CCCCCCCCc
Q 025917 49 SSLHKPSETPNSWKADQNMSVESLALSPQFTVKRCSIGEVGTKNPIWVHPNSLNFQRGPSRTKHLSIKSS-SRDGVGDKD 127 (246)
Q Consensus 49 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~ 127 (246)
.|.|...++++.+.++....+. +..+++- .++|- ||. +. .+...++.++.. ..... +++
T Consensus 131 ~s~~t~gs~~~~i~~~~~~~~~----~~~i~~i----~~~~~-~p~-----~i-----~~l~~~I~~~~~~~~~~~-~~~ 190 (333)
T PRK00035 131 YSYSTTASYFEDLARALAKLRL----QPEIRFI----RSYYD-HPG-----YI-----EALAESIREALAKHGEDP-EPD 190 (333)
T ss_pred cccccHHHHHHHHHHHHHhcCC----CCcEEEe----CCccC-CHH-----HH-----HHHHHHHHHHHHhcCccc-CCc
Confidence 3445555555555554433321 2233332 35666 665 76 334444433310 11111 568
Q ss_pred EEEEEeCCCCCch------hHHHHHHHHHHHHHHcCC--ceEEEEEecc------CCCCHHHHHHHHHHcCCCeEEEeee
Q 025917 128 GVIIVDHGSRRRE------SNLMLKQFVAMFREKTGY--LIVEPAHMEL------AEPSIKDAFGSCVQQGANRVIVSPF 193 (246)
Q Consensus 128 aLLLVgHGSr~pe------an~~l~~lA~~L~~r~~~--~~V~vAFLE~------~~PsL~eaLe~L~~qG~~rVvVVPl 193 (246)
+||+++||+..+. ....+.+.++.+.++.+. ..+++||... ..|+++++++++.++|+++|+|+|+
T Consensus 191 ~llfs~HG~P~~~~~~gd~Y~~~~~~t~~~l~~~l~~~~~~~~~~fqs~~g~~~Wl~P~~~~~l~~l~~~g~k~V~v~P~ 270 (333)
T PRK00035 191 RLLFSAHGLPQRYIDKGDPYQQQCEETARLLAEALGLPDEDYDLTYQSRFGPEPWLEPYTDDTLEELAEKGVKKVVVVPP 270 (333)
T ss_pred EEEEecCCCchHHhhcCCChHHHHHHHHHHHHHHhCCCCCCeEEEeeCCCCCCccCCCCHHHHHHHHHHcCCCeEEEECC
Confidence 9999999976432 345577778888777774 5789999985 5699999999999999999999999
Q ss_pred cccCcccc--cccHHHHHHHHHHhCCCceEEEcCCCCCChHHHHHHHHHHhcC
Q 025917 194 FLFPGRHW--CQDIPSLTAEAAKEHPGVPYIVTAPLGLHEQLVVNNFVLSFAR 244 (246)
Q Consensus 194 FL~~G~Hv--~~DIp~~l~~~~~~~Pgv~I~va~PLG~~p~Lva~ll~~Ry~~ 244 (246)
.++. .|+ ..||....++..++.....+.+.+.||++|.++ ++|.++..+
T Consensus 271 ~Fv~-D~lEtl~ei~~e~~~~~~~~G~~~~~~~~~ln~~~~~i-~~l~~~v~~ 321 (333)
T PRK00035 271 GFVS-DHLETLEEIDIEYREIAEEAGGEEFRRIPCLNDSPEFI-EALADLVRE 321 (333)
T ss_pred eeec-cchhHHHHHHHHHHHHHHHcCCceEEECCCCCCCHHHH-HHHHHHHHH
Confidence 8666 884 456665555444444333789999999999987 899888764
No 17
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=99.14 E-value=6.7e-10 Score=91.65 Aligned_cols=105 Identities=24% Similarity=0.269 Sum_probs=89.0
Q ss_pred CCCcEEEEEeCCCCCchh------HHHHHHHHHHHHHHcC--CceEEEEEeccC------CCCHHHHHHHHHHcCCCeEE
Q 025917 124 GDKDGVIIVDHGSRRRES------NLMLKQFVAMFREKTG--YLIVEPAHMELA------EPSIKDAFGSCVQQGANRVI 189 (246)
Q Consensus 124 ~~~~aLLLVgHGSr~pea------n~~l~~lA~~L~~r~~--~~~V~vAFLE~~------~PsL~eaLe~L~~qG~~rVv 189 (246)
.+...+|+.+||.+.... .....+.+++++++.+ ...+.++|.+.. .|++.++++++.++|+++|+
T Consensus 16 ~~~~~llfsaHgiP~~~~~~gd~Y~~~~~~~~~~v~~~l~~~~~~~~~~fqS~~g~~~Wl~P~~~~~l~~l~~~G~~~i~ 95 (135)
T cd00419 16 REKDRLLFSAHGLPVRDIKKGDPYPDQCEETARLVAERLGLPFDEYELAYQSRFGPGEWLEPSTDDALEELAKEGVKNVV 95 (135)
T ss_pred CCCCEEEEEcCCCHHHHhhCCCCHHHHHHHHHHHHHHHhCCCCCCEEEEecCCCCCCCCCCCCHHHHHHHHHHcCCCeEE
Confidence 466899999999985443 6788889999988887 667999999755 79999999999999999999
Q ss_pred Eeee-cccCcccccccHHHHHHHHHHhCCCceEEEcCCCC
Q 025917 190 VSPF-FLFPGRHWCQDIPSLTAEAAKEHPGVPYIVTAPLG 228 (246)
Q Consensus 190 VVPl-FL~~G~Hv~~DIp~~l~~~~~~~Pgv~I~va~PLG 228 (246)
|+|+ |++++.++..||+....+...++-+..+++.+.|+
T Consensus 96 v~p~gF~~D~~Etl~di~~e~~~~~~~~G~~~~~rvp~lN 135 (135)
T cd00419 96 VVPIGFVSDHLETLYELDIEYRELAEEAGGENYRRVPCLN 135 (135)
T ss_pred EECCccccccHHHHHHHHHHHHHHHHHcCCceEEEcCCCC
Confidence 9999 99999999999998888776666556777776653
No 18
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=99.07 E-value=3.4e-10 Score=103.12 Aligned_cols=101 Identities=17% Similarity=0.289 Sum_probs=75.9
Q ss_pred cEEEEEeCCCCCchhHH-HHHHHHHHHHHHcCCceEEEEEec------------cCCCCHHHHHHHHHHcCCCeEEEeee
Q 025917 127 DGVIIVDHGSRRRESNL-MLKQFVAMFREKTGYLIVEPAHME------------LAEPSIKDAFGSCVQQGANRVIVSPF 193 (246)
Q Consensus 127 ~aLLLVgHGSr~pean~-~l~~lA~~L~~r~~~~~V~vAFLE------------~~~PsL~eaLe~L~~qG~~rVvVVPl 193 (246)
.|||||++||+.+++.+ ++..+.+++++.+|...|+.||.+ ..-+++.++|++|.++|+++|+|.|+
T Consensus 1 KAIllvsFGTs~~~ar~~ti~~ie~~~~~~fp~~~V~~AfTS~~I~~kl~~~~g~~i~~~~eaL~~L~~~G~~~V~VQpl 80 (262)
T PF06180_consen 1 KAILLVSFGTSYPEAREKTIDAIEKAVREAFPDYDVRRAFTSRIIRKKLAERDGIKIDSPEEALAKLADEGYTEVVVQPL 80 (262)
T ss_dssp EEEEEEE---S-CCCCHHHHHHHHHHHHHCSTTSEEEEEES-HHHHHHHHHCHT-----HHHHHHHHHHCT--EEEEEE-
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEchHHHHHHHHHhcCCCCcCCHHHHHHHHHHCCCCEEEEeec
Confidence 48999999999999888 999999999999999999999995 24589999999999999999999999
Q ss_pred cccCcccccccHHHHHHHHHHhCCCceEEEcCCCCCC
Q 025917 194 FLFPGRHWCQDIPSLTAEAAKEHPGVPYIVTAPLGLH 230 (246)
Q Consensus 194 FL~~G~Hv~~DIp~~l~~~~~~~Pgv~I~va~PLG~~ 230 (246)
.+.+|..+. +|.+.++.++..+ .+|.++.||-..
T Consensus 81 hiipG~Ey~-~l~~~v~~~~~~F--~~i~~g~PLL~~ 114 (262)
T PF06180_consen 81 HIIPGEEYE-KLRATVEAYKHDF--KKIVLGRPLLYT 114 (262)
T ss_dssp -SCSSHHHH-HHHHHHHHHCCCS--SEEEEE--SCSS
T ss_pred ceeCcHhHH-HHHHHHHHhhccC--CeEEeccccccc
Confidence 999999994 7888877765544 467899999883
No 19
>PRK00035 hemH ferrochelatase; Reviewed
Probab=99.05 E-value=1.8e-09 Score=100.16 Aligned_cols=112 Identities=16% Similarity=0.101 Sum_probs=88.5
Q ss_pred EEEeCCCCCch-hHHHHHHHHHHHHHHcCCceEEEEEeccCCCCHHHHHHHHHHcCCCeEEEeeecccCcccccccHHHH
Q 025917 130 IIVDHGSRRRE-SNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQDIPSL 208 (246)
Q Consensus 130 LLVgHGSr~pe-an~~l~~lA~~L~~r~~~~~V~vAFLE~~~PsL~eaLe~L~~qG~~rVvVVPlFL~~G~Hv~~DIp~~ 208 (246)
=.++|||+... ..+..+.+.+++.++.+...|+.| ++.+.|++++++++|.++|+++|+|+|+|+.-+.++..++.+.
T Consensus 64 ~~ig~gSPl~~~t~~q~~~L~~~l~~~~~~~~V~~a-m~y~~P~i~eal~~l~~~G~~~IivlPL~p~~s~~t~gs~~~~ 142 (333)
T PRK00035 64 ASIGGGSPLNVITRRQAEALQAELAARGPDLPVYLG-MRYWNPSIEEALEALKADGVDRIVVLPLYPQYSYSTTASYFED 142 (333)
T ss_pred HHcCCCChhHHHHHHHHHHHHHHHhccCCCceEEEe-ecCCCCCHHHHHHHHHhcCCCEEEEEECCCccccccHHHHHHH
Confidence 35677998764 344566777777654445678777 5889999999999999999999999999998888887777776
Q ss_pred HHHHHHhCC-CceEEEcCCCCCChHHHHHHHHHHhc
Q 025917 209 TAEAAKEHP-GVPYIVTAPLGLHEQLVVNNFVLSFA 243 (246)
Q Consensus 209 l~~~~~~~P-gv~I~va~PLG~~p~Lva~ll~~Ry~ 243 (246)
+.....+++ ..++++.+|++.+|.++ +++.+|..
T Consensus 143 i~~~~~~~~~~~~i~~i~~~~~~p~~i-~~l~~~I~ 177 (333)
T PRK00035 143 LARALAKLRLQPEIRFIRSYYDHPGYI-EALAESIR 177 (333)
T ss_pred HHHHHHhcCCCCcEEEeCCccCCHHHH-HHHHHHHH
Confidence 666555565 67899999999999987 77777764
No 20
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=98.88 E-value=4e-08 Score=87.67 Aligned_cols=113 Identities=19% Similarity=0.253 Sum_probs=87.8
Q ss_pred CCCcEEEEEeCCCCCchhHHHHHHHHHHHHHHcCCceEEEEEeccCCCCHHHHHHHHHHcCCCeEEEeeecccCcccccc
Q 025917 124 GDKDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQ 203 (246)
Q Consensus 124 ~~~~aLLLVgHGSr~pean~~l~~lA~~L~~r~~~~~V~vAFLE~~~PsL~eaLe~L~~qG~~rVvVVPlFL~~G~Hv~~ 203 (246)
..++.+||++|||.++ ++....-+-..+.+ .+|.+|.+|.+| +.|.++..++.|.+.|.+.|.++||+|..|.|..+
T Consensus 135 ~k~e~~vlmgHGt~h~-s~~~YacLd~~~~~-~~f~~v~v~~ve-~yP~~d~vi~~l~~~~~~~v~L~PlMlvAG~Ha~n 211 (265)
T COG4822 135 NKDEILVLMGHGTDHH-SNAAYACLDHVLDE-YGFDNVFVAAVE-GYPLVDTVIEYLRKNGIKEVHLIPLMLVAGDHAKN 211 (265)
T ss_pred CcCeEEEEEecCCCcc-HHHHHHHHHHHHHh-cCCCceEEEEec-CCCcHHHHHHHHHHcCCceEEEeeeEEeechhhhh
Confidence 3688999999999885 45556556556654 488899999999 79999999999999999999999999999999999
Q ss_pred cHHH-HHHHHHHhC--CCceE-EEcCCCCCChHHHHHHHHH
Q 025917 204 DIPS-LTAEAAKEH--PGVPY-IVTAPLGLHEQLVVNNFVL 240 (246)
Q Consensus 204 DIp~-~l~~~~~~~--Pgv~I-~va~PLG~~p~Lva~ll~~ 240 (246)
|+.. --+.|+..+ .|.++ .+...||..|.+ +.++.+
T Consensus 212 DMasddedswk~il~~~G~~v~~~l~GLGE~~~i-q~ifi~ 251 (265)
T COG4822 212 DMASDDEDSWKNILEKNGFKVEVYLHGLGENPAI-QAIFID 251 (265)
T ss_pred hhcccchHHHHHHHHhCCceeEEEeecCCCcHHH-HHHHHH
Confidence 9982 122343322 24433 368899999985 566654
No 21
>TIGR00109 hemH ferrochelatase. Human ferrochelatase, found at the mitochondrial inner membrane inner surface, was shown in an active recombinant form to be a homodimer. This contrasts to an earlier finding by gel filtration that overexpressed E. coli ferrochelatase runs as a monomer.
Probab=98.60 E-value=4.2e-07 Score=84.71 Aligned_cols=117 Identities=15% Similarity=0.160 Sum_probs=84.9
Q ss_pred CcEEEEEeCCCCC------chhHHHHHHHHHHHHHHcC-CceEEEEEecc------CCCCHHHHHHHHHHcCCCeEEEee
Q 025917 126 KDGVIIVDHGSRR------RESNLMLKQFVAMFREKTG-YLIVEPAHMEL------AEPSIKDAFGSCVQQGANRVIVSP 192 (246)
Q Consensus 126 ~~aLLLVgHGSr~------pean~~l~~lA~~L~~r~~-~~~V~vAFLE~------~~PsL~eaLe~L~~qG~~rVvVVP 192 (246)
+..||+-+||-.. ......+.+.++++.++.+ ...+.+||-+. ..|++++.+++|.++|+++|+|+|
T Consensus 188 ~~~llfSaHglP~~~~~~Gd~Y~~~~~~ta~~l~~~l~~~~~~~~~fQS~~g~~~Wl~P~~~~~l~~l~~~G~k~V~vvP 267 (322)
T TIGR00109 188 NAVLLFSAHGLPQSYVDEGDPYPAECEATTRLIAEKLGFPNEYRLTWQSRVGPEPWLGPYTEELLEKLGEQGVQHIVVVP 267 (322)
T ss_pred CcEEEEeCCCCchhHhhCCCChHHHHHHHHHHHHHHcCCCCCeEEEEeCCCCCCCcCCCCHHHHHHHHHHcCCceEEEEC
Confidence 3478888899872 1233577888888888876 35789999984 379999999999999999999998
Q ss_pred e-cccCcccccccHHHHHHHHHHhCCCce-EEEcCCCCCChHHHHHHHHHHhcC
Q 025917 193 F-FLFPGRHWCQDIPSLTAEAAKEHPGVP-YIVTAPLGLHEQLVVNNFVLSFAR 244 (246)
Q Consensus 193 l-FL~~G~Hv~~DIp~~l~~~~~~~Pgv~-I~va~PLG~~p~Lva~ll~~Ry~~ 244 (246)
+ |+.+...+..||.-.......+. |.+ +.+.+.|++||.++ +.|.++..+
T Consensus 268 ~gFv~D~lETl~ei~~e~~~~~~~~-G~~~~~~vp~lN~~p~fi-~~l~~~v~~ 319 (322)
T TIGR00109 268 IGFTADHLETLYEIDEEYREVAEDA-GGDKYQRCPALNAKPEFI-EAMATLVKK 319 (322)
T ss_pred CcccccchhHHHhhhHHHHHHHHHc-CCCeEEECCCCCCCHHHH-HHHHHHHHH
Confidence 8 33333444444443333333333 444 99999999999987 888888765
No 22
>TIGR00109 hemH ferrochelatase. Human ferrochelatase, found at the mitochondrial inner membrane inner surface, was shown in an active recombinant form to be a homodimer. This contrasts to an earlier finding by gel filtration that overexpressed E. coli ferrochelatase runs as a monomer.
Probab=98.12 E-value=1.4e-05 Score=74.64 Aligned_cols=98 Identities=12% Similarity=0.109 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHcC---CceEEEEEeccCCCCHHHHHHHHHHcCCCeEEEeeec----ccCcccccccHHHHHHHHHH
Q 025917 142 NLMLKQFVAMFREKTG---YLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFF----LFPGRHWCQDIPSLTAEAAK 214 (246)
Q Consensus 142 n~~l~~lA~~L~~r~~---~~~V~vAFLE~~~PsL~eaLe~L~~qG~~rVvVVPlF----L~~G~Hv~~DIp~~l~~~~~ 214 (246)
+...++.++.|+++.+ ...|..|| ..+.|++++++++|.++|+++|+++|+| .+...++.+++++.++....
T Consensus 73 ~~~t~~q~~~l~~~l~~~~~~~V~~am-ry~~P~i~~~l~~l~~~G~~~iv~lPL~PqyS~~t~gs~~~~~~~~l~~~~~ 151 (322)
T TIGR00109 73 LQITEQQAHALEKRLPNEIDFKVYIAM-RYGEPFTEEAVKELLKDGVERAVVLPLYPHFSSSTTGSSFNELAEALKKLRS 151 (322)
T ss_pred HHHHHHHHHHHHHHhccCCCceEEEee-ccCCCCHHHHHHHHHhcCCCeEEEEeCCcccccccHHHHHHHHHHHHHhccc
Confidence 3445556666666655 46788888 5589999999999999999999999999 56666777788888765543
Q ss_pred hCCCceEEEcCCCCCChHHHHHHHHHHhc
Q 025917 215 EHPGVPYIVTAPLGLHEQLVVNNFVLSFA 243 (246)
Q Consensus 215 ~~Pgv~I~va~PLG~~p~Lva~ll~~Ry~ 243 (246)
.+ ..+++..+...||.++ +++.+|..
T Consensus 152 ~~--~~~~~i~~~~~~p~yi-~a~~~~I~ 177 (322)
T TIGR00109 152 LR--PTISVIESWYDNPKYI-KALADSIK 177 (322)
T ss_pred CC--CeEEEeCccccCcHHH-HHHHHHHH
Confidence 22 3567889999999987 77877764
No 23
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=98.03 E-value=7e-06 Score=73.54 Aligned_cols=102 Identities=16% Similarity=0.237 Sum_probs=84.0
Q ss_pred CCcEEEEEeCCCCCchhHH-HHHHHHHHHHHHcCCceEEEEEec------------cCCCCHHHHHHHHHHcCCCeEEEe
Q 025917 125 DKDGVIIVDHGSRRRESNL-MLKQFVAMFREKTGYLIVEPAHME------------LAEPSIKDAFGSCVQQGANRVIVS 191 (246)
Q Consensus 125 ~~~aLLLVgHGSr~pean~-~l~~lA~~L~~r~~~~~V~vAFLE------------~~~PsL~eaLe~L~~qG~~rVvVV 191 (246)
++.||++|+.|++.++..+ ++..+-+.+....|...|.-||.+ ..-.+..++|++|.++|++.|+|.
T Consensus 1 mKKailiVsFGTty~dtre~tIda~e~~va~efpDydvfrAfTS~kIIkkLK~rdgi~~dTP~~aL~klk~~gy~eviiQ 80 (265)
T COG4822 1 MKKAILIVSFGTTYNDTRELTIDAIEEKVADEFPDYDVFRAFTSRKIIKKLKERDGIDFDTPIQALNKLKDQGYEEVIIQ 80 (265)
T ss_pred CCceEEEEEcCCccchhHHhhHHHHHHHHHHhCccHHHHHHHhHHHHHHHHHhhcCcccCCHHHHHHHHHHccchheeee
Confidence 4689999999999887765 688888888888888888888874 122456799999999999999999
Q ss_pred eecccCcccccccHHHHHHHHHHhCCCceEEEcCCCCC
Q 025917 192 PFFLFPGRHWCQDIPSLTAEAAKEHPGVPYIVTAPLGL 229 (246)
Q Consensus 192 PlFL~~G~Hv~~DIp~~l~~~~~~~Pgv~I~va~PLG~ 229 (246)
|+.+.||..+ +-|.+.++.++..+.. +.++.||-.
T Consensus 81 ~lhiIpG~Ey-Eklvr~V~~~~~dF~~--lkig~PlLy 115 (265)
T COG4822 81 PLHIIPGIEY-EKLVREVNKYSNDFKR--LKIGRPLLY 115 (265)
T ss_pred eeeecCchHH-HHHHHHHHHHhhhhhe--eecCCceee
Confidence 9999999999 4788888888766644 478888874
No 24
>PLN02449 ferrochelatase
Probab=97.87 E-value=9.2e-05 Score=73.03 Aligned_cols=119 Identities=13% Similarity=0.125 Sum_probs=86.8
Q ss_pred CCCcEEEEEeCCCCCc-------hhHHHHHHHHHHHHHHcCC----ceEEEEEec-cC-----CCCHHHHHHHHHHcCCC
Q 025917 124 GDKDGVIIVDHGSRRR-------ESNLMLKQFVAMFREKTGY----LIVEPAHME-LA-----EPSIKDAFGSCVQQGAN 186 (246)
Q Consensus 124 ~~~~aLLLVgHGSr~p-------ean~~l~~lA~~L~~r~~~----~~V~vAFLE-~~-----~PsL~eaLe~L~~qG~~ 186 (246)
.++..||+-+||-... .....+++.++.+.++.+. ..+.+||-+ ++ .|.+++++++|.++|++
T Consensus 274 ~~~~~LlFSAHGlP~~~v~~~GDpY~~q~~~ta~lI~~~L~~~~~~~~~~layQSR~Gp~eWL~P~t~d~L~~L~~~Gvk 353 (485)
T PLN02449 274 PEEVHIFFSAHGVPVSYVEEAGDPYKAQMEECVDLIMEELKARGILNRHTLAYQSRVGPVEWLKPYTDETIVELGKKGVK 353 (485)
T ss_pred cCCcEEEEecCCChhhhhhhcCCChHHHHHHHHHHHHHHhCCCCCCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCC
Confidence 4567899999998743 1345667777777766654 458889987 33 59999999999999999
Q ss_pred eEEEeee-cccCcccccccHHHHHHHHHHhCCCceEEEcCCCCCChHHHHHHHHHHhc
Q 025917 187 RVIVSPF-FLFPGRHWCQDIPSLTAEAAKEHPGVPYIVTAPLGLHEQLVVNNFVLSFA 243 (246)
Q Consensus 187 rVvVVPl-FL~~G~Hv~~DIp~~l~~~~~~~Pgv~I~va~PLG~~p~Lva~ll~~Ry~ 243 (246)
+|+|+|. |+.+...+..||--..++...+.....+...+.|+++|..+ +.|++...
T Consensus 354 ~VlvvPigFvSDhiETL~EiDiE~re~a~e~G~~~~~rVP~LN~~p~FI-~~La~lV~ 410 (485)
T PLN02449 354 SLLAVPISFVSEHIETLEEIDMEYRELALESGIENWGRVPALGCEPTFI-SDLADAVI 410 (485)
T ss_pred eEEEECCcccccchHHHHHHHHHHHHHHHHcCCceEEEcCCCCCCHHHH-HHHHHHHH
Confidence 9999986 55565666666655555554444344689999999999987 56665543
No 25
>cd03411 Ferrochelatase_N Ferrochelatase, N-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=97.86 E-value=0.00013 Score=61.37 Aligned_cols=79 Identities=20% Similarity=0.217 Sum_probs=55.8
Q ss_pred eCCCCCch-hHHHHHHHHHHHHHHcCCceEEEEEeccCCCCHHHHHHHHHHcCCCeEEEeeecccCcccccccHHHHHHH
Q 025917 133 DHGSRRRE-SNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQDIPSLTAE 211 (246)
Q Consensus 133 gHGSr~pe-an~~l~~lA~~L~~r~~~~~V~vAFLE~~~PsL~eaLe~L~~qG~~rVvVVPlFL~~G~Hv~~DIp~~l~~ 211 (246)
++||.-.. .....+.+.+++.+......|..| +..+.|+++++++++.+.|+++|+++|+|......+..-.-+.+.+
T Consensus 61 g~~SPL~~~t~~q~~~l~~~L~~~~~~~~v~~a-mry~~P~i~~~l~~l~~~g~~~iivlPl~P~~S~~Tt~s~~~~~~~ 139 (159)
T cd03411 61 GGGSPLNEITRAQAEALEKALDERGIDVKVYLA-MRYGPPSIEEALEELKADGVDRIVVLPLYPQYSASTTGSYLDEVER 139 (159)
T ss_pred CCCCccHHHHHHHHHHHHHHHhccCCCcEEEeh-HhcCCCCHHHHHHHHHHcCCCEEEEEECCcccccccHHHHHHHHHH
Confidence 44776533 333445556666543333567666 7778999999999999999999999999999887765544444444
Q ss_pred H
Q 025917 212 A 212 (246)
Q Consensus 212 ~ 212 (246)
.
T Consensus 140 ~ 140 (159)
T cd03411 140 A 140 (159)
T ss_pred H
Confidence 3
No 26
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=97.85 E-value=2.9e-05 Score=72.40 Aligned_cols=118 Identities=19% Similarity=0.207 Sum_probs=83.8
Q ss_pred CcEEEEEeCCCCCc-------hhHHHHHHHHHHHHHHcCCceEEEEEecc------CCCCHHHHHHHHHHcCCCeEEEee
Q 025917 126 KDGVIIVDHGSRRR-------ESNLMLKQFVAMFREKTGYLIVEPAHMEL------AEPSIKDAFGSCVQQGANRVIVSP 192 (246)
Q Consensus 126 ~~aLLLVgHGSr~p-------ean~~l~~lA~~L~~r~~~~~V~vAFLE~------~~PsL~eaLe~L~~qG~~rVvVVP 192 (246)
...+|+-+||-... .......+.++.++++.+...+.+||-+. -.|+++++++++.++|+++|+|+|
T Consensus 183 ~~~llfSaHglP~~~~~~~GdpY~~~~~~t~~~i~~~l~~~~~~~~fQS~~g~~~WL~P~~~~~l~~l~~~G~~~V~v~p 262 (316)
T PF00762_consen 183 PDHLLFSAHGLPQRYVEDKGDPYPAQCEETARLIAERLGLPEWRLAFQSRFGPGEWLGPSTEDVLEELAKEGVKRVVVVP 262 (316)
T ss_dssp CEEEEEEEE--BHHHHTCCT-SHHHHHHHHHHHHHHHTTTSSEEEEEES-SSSS-BSSSBHHHHHHHHHHCT-SEEEEEE
T ss_pred CCEEEEccCCCCccccccCCCChHHHHHHHHHHHHHHcCCCceEEEEECCCCCCCCccccHHHHHHHHHhcCCCeEEEEC
Confidence 58999999998642 23456778888888888888899999962 348999999999999999999997
Q ss_pred e-cccCcccccccHHHHHHHHHHhCCCceEEEcCCCCCChHHHHHHHHHHhcC
Q 025917 193 F-FLFPGRHWCQDIPSLTAEAAKEHPGVPYIVTAPLGLHEQLVVNNFVLSFAR 244 (246)
Q Consensus 193 l-FL~~G~Hv~~DIp~~l~~~~~~~Pgv~I~va~PLG~~p~Lva~ll~~Ry~~ 244 (246)
. |+.+...+..||.-..++...+..+-++.+.+.|+++|..+ +.|.+...+
T Consensus 263 ~gFv~D~lETl~eidie~re~~~~~G~~~~~~ip~lN~~~~fi-~~La~~v~~ 314 (316)
T PF00762_consen 263 PGFVSDCLETLYEIDIEYRELAEEAGGEEFVRIPCLNDSPEFI-EALADLVRE 314 (316)
T ss_dssp TT-SSSSHHHHCCCCCHHHHHHHHHTCCEEEE---STT-HHHH-HHHHHHHHH
T ss_pred CccccccHhHHHHHHHHHHHHHHHcCCceEEEeCCCCCCHHHH-HHHHHHHHh
Confidence 6 66677777667754444443444344889999999999987 888877654
No 27
>PRK12435 ferrochelatase; Provisional
Probab=97.78 E-value=0.00041 Score=64.70 Aligned_cols=117 Identities=13% Similarity=0.098 Sum_probs=87.5
Q ss_pred CCcEEEEEeCCCCCc------hhHHHHHHHHHHHHHHcCCceEEEEEecc-C------CCCHHHHHHHHHHc-CCCeEEE
Q 025917 125 DKDGVIIVDHGSRRR------ESNLMLKQFVAMFREKTGYLIVEPAHMEL-A------EPSIKDAFGSCVQQ-GANRVIV 190 (246)
Q Consensus 125 ~~~aLLLVgHGSr~p------ean~~l~~lA~~L~~r~~~~~V~vAFLE~-~------~PsL~eaLe~L~~q-G~~rVvV 190 (246)
++..||+.+||-... ......++.++.+.++.+...+.++|-+. . .|++++.++++.++ |.++|+|
T Consensus 173 ~~~~llfSaHslP~~~i~~GDpY~~q~~~t~~~v~~~l~~~~~~l~yQSr~~g~~~WL~P~t~d~l~~l~~~~G~k~v~v 252 (311)
T PRK12435 173 EKAVLIVSAHSLPEKIIAAGDPYPDQLEETADLIAEQANVEHYAIGWQSEGNTPDPWLGPDVQDLTRDLYEEHGYKSFIY 252 (311)
T ss_pred cceEEEEecCCCchhHhhCCCCHHHHHHHHHHHHHHHcCCCCCeEeeecCCCCCCCCCCCCHHHHHHHHHHhcCCceEEE
Confidence 456899999999742 24456667777777777766678888874 2 58999999999887 9999999
Q ss_pred ee-ecccCcccccccHHHHHHHHHHhCCCceEEEcCCCCCChHHHHHHHHHHhc
Q 025917 191 SP-FFLFPGRHWCQDIPSLTAEAAKEHPGVPYIVTAPLGLHEQLVVNNFVLSFA 243 (246)
Q Consensus 191 VP-lFL~~G~Hv~~DIp~~l~~~~~~~Pgv~I~va~PLG~~p~Lva~ll~~Ry~ 243 (246)
+| -|+.+...+..||--..++...+. |.++...+.|+++|..+ +.|.+...
T Consensus 253 vpigFvsDhlETl~Eldie~~e~a~~~-G~~~~r~~~lN~~p~fi-~~La~lv~ 304 (311)
T PRK12435 253 TPVGFVAEHLEVLYDNDYECKVVTDEI-GAKYYRPEMPNADPLFI-DALADVVL 304 (311)
T ss_pred ECCchhhhhHHHHHHHHHHHHHHHHHc-CCcEEeccCCCCCHHHH-HHHHHHHH
Confidence 98 677888888777765544443333 45678888999999987 66666544
No 28
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=97.37 E-value=0.0017 Score=60.67 Aligned_cols=98 Identities=16% Similarity=0.145 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHcCCceEEEEEeccCCCCHHHHHHHHHHcCCCeEEEeeecccCcccccccHHHHHHHHHHh-CCCceEE
Q 025917 144 MLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQDIPSLTAEAAKE-HPGVPYI 222 (246)
Q Consensus 144 ~l~~lA~~L~~r~~~~~V~vAFLE~~~PsL~eaLe~L~~qG~~rVvVVPlFL~~G~Hv~~DIp~~l~~~~~~-~Pgv~I~ 222 (246)
..+.+.+.|.++.....|..||-- +.|+++++++++.++|+++++++|++=.-...+..-+-+.++....+ .+..++.
T Consensus 74 qa~~l~~~L~~~~~~~~V~~amry-~~P~i~~~l~~l~~~g~~~ivvlPLyPqyS~~ttgs~~~~~~~~~~~~~~~~~~~ 152 (316)
T PF00762_consen 74 QAEALQQRLDERGVDVEVYYAMRY-GPPSIEDALEELKADGVDRIVVLPLYPQYSSSTTGSYLDEVERALKKSRPNPKVR 152 (316)
T ss_dssp HHHHHHHHHHHH-EEEEEEEEESS-SSSBHHHHHHHHHHTT-SEEEEEESSSS--TTTHHHHHHHHHHHHHHTHSSSEEE
T ss_pred HHHHHHHHHHhcCCCeeEEEEecc-CCCCHHHHHHHHHHcCCCeEEEEeCCCchhHhhHHHHHHHHHHHHHhcCCCCeEE
Confidence 344555555544334578888776 78999999999999999999999999877766654444444444333 4667889
Q ss_pred EcCCCCCChHHHHHHHHHHhc
Q 025917 223 VTAPLGLHEQLVVNNFVLSFA 243 (246)
Q Consensus 223 va~PLG~~p~Lva~ll~~Ry~ 243 (246)
+-++...||..+ +.+.++..
T Consensus 153 ~i~~~~~~p~yi-~a~~~~i~ 172 (316)
T PF00762_consen 153 FIPSFYDHPAYI-EALAERIR 172 (316)
T ss_dssp EE---TT-HHHH-HHHHHHHH
T ss_pred EeCCccCCHHHH-HHHHHHHH
Confidence 999999999987 78887764
No 29
>PRK12435 ferrochelatase; Provisional
Probab=97.13 E-value=0.006 Score=56.99 Aligned_cols=82 Identities=12% Similarity=0.055 Sum_probs=57.4
Q ss_pred ceEEEEEeccCCCCHHHHHHHHHHcCCCeEEEeeeccc-CcccccccHHHHHHHHHHhCCCceEEEcCCCCCChHHHHHH
Q 025917 159 LIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLF-PGRHWCQDIPSLTAEAAKEHPGVPYIVTAPLGLHEQLVVNN 237 (246)
Q Consensus 159 ~~V~vAFLE~~~PsL~eaLe~L~~qG~~rVvVVPlFL~-~G~Hv~~DIp~~l~~~~~~~Pgv~I~va~PLG~~p~Lva~l 237 (246)
..|++|+=- ..|++++++++|.++|+++|+++|++=. ...-+ .-.-+.+.......+..++++-++.-.||..+ +.
T Consensus 79 ~~V~~amry-~~P~i~~~l~~l~~~g~~~iv~lpLyPqyS~~Tt-~s~~~~~~~~~~~~~~~~~~~i~~~~~~p~yi-~a 155 (311)
T PRK12435 79 FKLYLGLKH-IEPFIEDAVEQMHNDGIEEAISIVLAPHYSTFSV-KSYNKRAKEEAEKLGGPTITSIESWYDEPKFI-QY 155 (311)
T ss_pred ceEEEEecC-CCCCHHHHHHHHHHcCCCeEEEEECCCccccccH-HHHHHHHHHHhcccCCCeEEEeCCccCChHHH-HH
Confidence 456666554 7899999999999999999999998733 33322 22222333332334456788899999999987 77
Q ss_pred HHHHhc
Q 025917 238 FVLSFA 243 (246)
Q Consensus 238 l~~Ry~ 243 (246)
+.++.+
T Consensus 156 ~a~~I~ 161 (311)
T PRK12435 156 WADQIK 161 (311)
T ss_pred HHHHHH
Confidence 776643
No 30
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=97.09 E-value=0.007 Score=57.05 Aligned_cols=100 Identities=14% Similarity=0.083 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHcC--CceEEEEEeccCCCCHHHHHHHHHHcCCCeEEEeeecccCcccccccHHHHHHH-HHHhCCC
Q 025917 142 NLMLKQFVAMFREKTG--YLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQDIPSLTAE-AAKEHPG 218 (246)
Q Consensus 142 n~~l~~lA~~L~~r~~--~~~V~vAFLE~~~PsL~eaLe~L~~qG~~rVvVVPlFL~~G~Hv~~DIp~~l~~-~~~~~Pg 218 (246)
+...++.++.|.++.+ ...|.+|+-- .+|++++++++|.++|+++++++|++=.-+..+..-.-+.+.. +++...+
T Consensus 72 ~~~T~~q~~~L~~~L~~~~~~V~~amry-~~P~i~~~v~~l~~~gv~~iv~~pLyPqyS~sTt~s~~~~~~~al~~~~~~ 150 (320)
T COG0276 72 NVITRAQAAALEERLDLPDFKVYLAMRY-GPPFIEEAVEELKKDGVERIVVLPLYPQYSSSTTGSYVDELARALKELRGQ 150 (320)
T ss_pred HHHHHHHHHHHHHHhCCCCccEEEeecC-CCCcHHHHHHHHHHcCCCeEEEEECCcccccccHHHHHHHHHHHHHhcCCC
Confidence 4455666777776654 6678888776 7899999999999999999999999877666654322222222 2223345
Q ss_pred ceEEEcCCCCCChHHHHHHHHHHhc
Q 025917 219 VPYIVTAPLGLHEQLVVNNFVLSFA 243 (246)
Q Consensus 219 v~I~va~PLG~~p~Lva~ll~~Ry~ 243 (246)
.++..-++...+|..+ +.+++..+
T Consensus 151 ~~i~~I~~~~~~p~yI-~a~a~~I~ 174 (320)
T COG0276 151 PKISTIPDYYDEPLYI-EALADSIR 174 (320)
T ss_pred CceEEecCccCChHHH-HHHHHHHH
Confidence 7888999999999987 77777654
No 31
>PLN02449 ferrochelatase
Probab=96.53 E-value=0.018 Score=57.18 Aligned_cols=109 Identities=14% Similarity=0.053 Sum_probs=67.7
Q ss_pred eCCCCCchhH-HHHHHHHHHHHHHcCCceEEEEEeccCCCCHHHHHHHHHHcCCCeEEEeeecccCcccccccHHHHHHH
Q 025917 133 DHGSRRRESN-LMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQDIPSLTAE 211 (246)
Q Consensus 133 gHGSr~pean-~~l~~lA~~L~~r~~~~~V~vAFLE~~~PsL~eaLe~L~~qG~~rVvVVPlFL~~G~Hv~~DIp~~l~~ 211 (246)
+-||.-.... ...+.+.+.|.+......|++|+=- ..|.++++++++.+.|+++|+++|++=.-..-+..-.-+.+++
T Consensus 153 GGgSPL~~iT~~Qa~~Lq~~L~~~~~~~~V~~aMRY-~~P~iedal~~l~~~G~~~iVvLPLYPQyS~sTtgSs~~~l~~ 231 (485)
T PLN02449 153 GGGSPLRKITDEQAEALAKALEAKNLPAKVYVGMRY-WHPFTEEAIDQIKADGITKLVVLPLYPQFSISTSGSSLRLLES 231 (485)
T ss_pred CCCCchHHHHHHHHHHHHHHHhccCCCeEEEEhhhc-CCCCHHHHHHHHHhcCCCeEEEEECCcccccccHHHHHHHHHH
Confidence 5566543333 2344555556544334567777655 6899999999999999999999999733222221111112222
Q ss_pred HHHhC---CCceEEEcCCCCCChHHHHHHHHHHhc
Q 025917 212 AAKEH---PGVPYIVTAPLGLHEQLVVNNFVLSFA 243 (246)
Q Consensus 212 ~~~~~---Pgv~I~va~PLG~~p~Lva~ll~~Ry~ 243 (246)
..... .+.++++-+..-.+|..+ +.++++..
T Consensus 232 ~~~~~~~~~~~~~~~I~~~~~~p~yI-~A~a~~I~ 265 (485)
T PLN02449 232 IFREDEYLVNMQHTVIPSWYQREGYV-KAMADLIK 265 (485)
T ss_pred HHhhcccccCCeeEEeccccCChHHH-HHHHHHHH
Confidence 22111 245778899999999987 66666544
No 32
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=96.41 E-value=0.058 Score=50.97 Aligned_cols=116 Identities=18% Similarity=0.222 Sum_probs=85.6
Q ss_pred CCCcEEEEEeCCCCCch------hHHHHHHHHHHHHHHcC--CceEEEEEec------cCCCCHHHHHHHHHHcCCCeEE
Q 025917 124 GDKDGVIIVDHGSRRRE------SNLMLKQFVAMFREKTG--YLIVEPAHME------LAEPSIKDAFGSCVQQGANRVI 189 (246)
Q Consensus 124 ~~~~aLLLVgHGSr~pe------an~~l~~lA~~L~~r~~--~~~V~vAFLE------~~~PsL~eaLe~L~~qG~~rVv 189 (246)
.++.-+|+=+||=.... .....++-++.++++.+ .....++|=+ =-.|+.++.++.|.++|.++|+
T Consensus 182 ~~~~~llfSaHglP~~~~~~GDpY~~q~~~t~~li~e~lg~~~~~~~~~~QS~~G~~~WL~P~t~~~l~~L~~~g~k~ii 261 (320)
T COG0276 182 RDDDVLLFSAHGLPKRYIDEGDPYPQQCQETTRLIAEALGLPEEEYDLTFQSRFGPEPWLQPYTDDLLEELGEKGVKKII 261 (320)
T ss_pred CCCeEEEEecCCCchhhhhcCCchHHHHHHHHHHHHHHcCCCchheeEEeecCCCCCCCCCCCHHHHHHHHHhcCCCeEE
Confidence 35678999999987522 23467777788888877 5567777765 2358999999999999999999
Q ss_pred Eeee-cccCcccccccHHHHHHHHHHhCCCceEEEcCCCCCChHHHHHHHHH
Q 025917 190 VSPF-FLFPGRHWCQDIPSLTAEAAKEHPGVPYIVTAPLGLHEQLVVNNFVL 240 (246)
Q Consensus 190 VVPl-FL~~G~Hv~~DIp~~l~~~~~~~Pgv~I~va~PLG~~p~Lva~ll~~ 240 (246)
|+|. |.++-..+-.||-....+.....-+.++...+.++++|..+ +.+++
T Consensus 262 v~pigFvsDhlETL~Eid~e~~e~~~~~Gg~~y~rip~lN~~p~fi-~~la~ 312 (320)
T COG0276 262 VVPIGFVSDHLETLYEIDHEYRELAEEAGGKKYVRIPCLNDSPEFI-DALAD 312 (320)
T ss_pred EECCchhhhhHHHHHHHHHHHHHHHHHhCCccEEecCCCCCCHHHH-HHHHH
Confidence 9986 55555555666666555554445558899999999999987 55544
No 33
>PLN02757 sirohydrochlorine ferrochelatase
Probab=93.55 E-value=0.014 Score=49.32 Aligned_cols=74 Identities=8% Similarity=0.064 Sum_probs=51.6
Q ss_pred HHHHHHhhcccCCCCCccchHHhhccChhhhcCCCceeeeeeccCccCCCCCCCCCCCCccccCCCCcccccccccCCCC
Q 025917 42 LILCKITSSLHKPSETPNSWKADQNMSVESLALSPQFTVKRCSIGEVGTKNPIWVHPNSLNFQRGPSRTKHLSIKSSSRD 121 (246)
Q Consensus 42 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 121 (246)
++=.+|..+.|.+.|||+.+++.+.+.| .+++. ++ .++|+ ||. +. ..+..|+.++-....
T Consensus 77 VvP~FL~~G~H~~~DIp~~v~~~~~~~p-------~~~i~-~~-~pLG~-~p~-----l~-----~ll~~Ri~eal~~~~ 136 (154)
T PLN02757 77 VSPFFLSPGRHWQEDIPALTAEAAKEHP-------GVKYL-VT-APIGL-HEL-----MV-----DVVNDRIKYCLSHVA 136 (154)
T ss_pred EEEhhhcCCcchHhHHHHHHHHHHHHCC-------CcEEE-EC-CCCCC-CHH-----HH-----HHHHHHHHHHhhccc
Confidence 3446789999999999999999999988 66666 55 69999 887 77 445556655521122
Q ss_pred CCCCCcEEEEEeCCC
Q 025917 122 GVGDKDGVIIVDHGS 136 (246)
Q Consensus 122 ~~~~~~aLLLVgHGS 136 (246)
+. +.+..+.++.|.
T Consensus 137 ~~-~~~~~~~~~~~~ 150 (154)
T PLN02757 137 GD-ADECDVCAGTGK 150 (154)
T ss_pred CC-CCccceeecccc
Confidence 22 345566676664
No 34
>cd03415 CbiX_CbiC Archaeal sirohydrochlorin cobalt chelatase (CbiX) single domain. Proteins in this subgroup contain a single CbiX domain N-terminal to a precorrin-8X methylmutase (CbiC) domain. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, while CbiC catalyzes the conversion of cobalt-precorrin 8 to cobyrinic acid by methyl rearrangement. Both CbiX and CbiC are involved in vitamin B12 biosynthesis.
Probab=91.93 E-value=0.013 Score=48.03 Aligned_cols=52 Identities=10% Similarity=0.098 Sum_probs=34.0
Q ss_pred HHHHHHHHhhcccCCCCCccchHHhhccChhhhcC-CCceeeeeeccCccCCCCCC
Q 025917 40 IALILCKITSSLHKPSETPNSWKADQNMSVESLAL-SPQFTVKRCSIGEVGTKNPI 94 (246)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~ 94 (246)
|..+..+|++++|.+.|||+.+..++.++..+.-. ....++. ++ .++|+ ||.
T Consensus 61 ivVvPlFL~~G~Hv~~DiP~~l~~~~~~~~~~~~~~~~~~~i~-~~-~pLG~-~p~ 113 (125)
T cd03415 61 IIIALAFLGRGNHVARDIMGELGVSRFYKWVMSKYGGKEILVY-VT-EPLAD-SPL 113 (125)
T ss_pred EEEehhhccCCcchHHHHHHHHHhhcccchhhhccCCCCceEE-Ee-CCCCC-CHH
Confidence 45567789999999999999999853333211111 1134444 44 59999 887
No 35
>PF01903 CbiX: CbiX; InterPro: IPR002762 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the CbiX protein, which functions as a cobalt-chelatase in the anaerobic biosynthesis of cobalamin. It catalyses the insertion of cobalt into sirohydrochlorin. The structure of CbiX from Archaeoglobus fulgidus consists of a central mixed beta-sheet flanked by four alpha-helices, although it is about half the size of other Class II tetrapyrrole chelatases []. The CbiX proteins found in archaea appear to be shorter than those found in eubacteria [].; GO: 0016829 lyase activity, 0046872 metal ion binding, 0009236 cobalamin biosynthetic process; PDB: 2XWQ_C 2DJ5_A 1TJN_A 2XWS_A 3LYH_B 2JH3_D.
Probab=86.39 E-value=0.081 Score=40.60 Aligned_cols=41 Identities=12% Similarity=0.269 Sum_probs=32.9
Q ss_pred HHHHhhcccCCCCCccchHHhhccChhhhcCCCceeeeeeccCccCCCCCC
Q 025917 44 LCKITSSLHKPSETPNSWKADQNMSVESLALSPQFTVKRCSIGEVGTKNPI 94 (246)
Q Consensus 44 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 94 (246)
=.+|..++|.+.|||+.+...+.+.| .+++. +. .++|+ ||.
T Consensus 58 P~fL~~G~h~~~DIp~~l~~~~~~~~-------~~~v~-~~-~pLG~-~p~ 98 (105)
T PF01903_consen 58 PYFLFPGYHVKRDIPEALAEARERHP-------GIEVR-VA-PPLGP-HPL 98 (105)
T ss_dssp EESSSSSHHHHCHHHHHHCHHHHCST-------TEEEE-E----GGG-SCC
T ss_pred eeeecCccchHhHHHHHHHHHHhhCC-------ceEEE-EC-CCCCC-CHH
Confidence 35678999999999999999999998 66666 55 69999 886
No 36
>PRK05782 bifunctional sirohydrochlorin cobalt chelatase/precorrin-8X methylmutase; Validated
Probab=81.76 E-value=0.28 Score=46.66 Aligned_cols=64 Identities=11% Similarity=0.024 Sum_probs=40.3
Q ss_pred HHHHHHHHhhcccCCCCCccchHHhhccChh-hhcCCCceeeeeeccCccCCCCCCCCCCCCccccCCCCcccccccc
Q 025917 40 IALILCKITSSLHKPSETPNSWKADQNMSVE-SLALSPQFTVKRCSIGEVGTKNPIWVHPNSLNFQRGPSRTKHLSIK 116 (246)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~ 116 (246)
|..+-.+|+.++|.+.|||+.++.++.++-+ +.+-...+.+. +. .++|+ ||. +. ..+.+|+.++
T Consensus 67 IvVvPlFL~~G~Hv~~DIP~~L~~~~~~~~~~~~~~~~~i~i~-l~-~pLG~-~p~-----l~-----~ll~~Rv~ea 131 (335)
T PRK05782 67 VIIALAFLGRGNHVFRDIMGELGVQRLNSWEVSKISGKEVEFY-VT-EPLSD-SPL-----VG-----LALYYRLARA 131 (335)
T ss_pred EEEecccccCCcchhhhHHHHHHHhhhcchhhhhcCCCceeEE-EC-CCCCC-ChH-----HH-----HHHHHHHHHH
Confidence 4455668899999999999999975433211 11111134444 33 59999 887 77 5555566554
No 37
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=78.15 E-value=0.66 Score=37.01 Aligned_cols=44 Identities=9% Similarity=0.209 Sum_probs=29.7
Q ss_pred HHHHHHHhhcccCCCCCccchHHhh-------ccChhhhcCCCceeeeeeccCccCCCCCC
Q 025917 41 ALILCKITSSLHKPSETPNSWKADQ-------NMSVESLALSPQFTVKRCSIGEVGTKNPI 94 (246)
Q Consensus 41 ~~~~~~~~~~~~~~~~~p~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 94 (246)
.++=.+|.++.|.+.|+|..+...+ ...| ..++. +. .++|+ ||.
T Consensus 64 ~vvPlfl~~G~h~~~dip~~~~~~~~~~~~~~~~~~-------~~~i~-~~-~~lG~-~p~ 114 (126)
T PRK00923 64 IVVPVFLAHGVHTKRDIPRILGLDEGEKEEIEEDGK-------DVEIV-YA-EPLGA-DER 114 (126)
T ss_pred EEEchhhccCcccccccchhhhcccccccchhhcCC-------CeEEE-Ec-CCCCC-CHH
Confidence 3344568899999999999777332 2233 44444 33 58999 887
No 38
>KOG1321 consensus Protoheme ferro-lyase (ferrochelatase) [Coenzyme transport and metabolism]
Probab=78.09 E-value=20 Score=34.55 Aligned_cols=109 Identities=13% Similarity=0.134 Sum_probs=75.0
Q ss_pred EEeCCCCCchhHH-HHHHHHHHHHHHcCC---ceEEEEEeccCCCCHHHHHHHHHHcCCCeEEEeeecc-----cCcccc
Q 025917 131 IVDHGSRRRESNL-MLKQFVAMFREKTGY---LIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFL-----FPGRHW 201 (246)
Q Consensus 131 LVgHGSr~pean~-~l~~lA~~L~~r~~~---~~V~vAFLE~~~PsL~eaLe~L~~qG~~rVvVVPlFL-----~~G~Hv 201 (246)
=+|-||.-..+.+ .-+++...|.+..|. ..+++||=- ..|-.+++++++.+.|.+|++++|..= ..|.-.
T Consensus 97 ~IGGGSPir~wT~~Q~~~m~k~Ld~~~petaphk~YVgfRY-~~PlTEea~~qikkd~v~r~VafsqYPQyS~sTsGSSl 175 (395)
T KOG1321|consen 97 EIGGGSPIRKWTEYQAEEMCKILDKKCPETAPHKPYVGFRY-AHPLTEEALEQIKKDGVTRAVAFSQYPQYSCSTSGSSL 175 (395)
T ss_pred hccCCCchhHHHHHHHHHHHHHHHhcCcccCCccceeeeee-cCcccHHHHHHHHhcCceeEEeeccCCceeeecCcccH
Confidence 4577787655554 356667777766643 246677765 579999999999999999999998653 244444
Q ss_pred cccHHHHHHHHHHhCCCceEEEcCCCCCChHHHHHHHHHHhc
Q 025917 202 CQDIPSLTAEAAKEHPGVPYIVTAPLGLHEQLVVNNFVLSFA 243 (246)
Q Consensus 202 ~~DIp~~l~~~~~~~Pgv~I~va~PLG~~p~Lva~ll~~Ry~ 243 (246)
+.|.+...+. ..-.++++.+-+-.+.++.++ ..++++..
T Consensus 176 -n~l~r~~r~~-~~~~~~~wsiIdrW~t~~glI-kafA~~I~ 214 (395)
T KOG1321|consen 176 -NELWRQFRED-GYERDIKWSIIDRWPTREGLI-KAFAENIE 214 (395)
T ss_pred -HHHHHHHHhc-CcccCCceEeeccccccchHH-HHHHHHHH
Confidence 3344333221 122478888899999999987 77887764
No 39
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=75.73 E-value=26 Score=31.23 Aligned_cols=89 Identities=15% Similarity=0.096 Sum_probs=57.2
Q ss_pred EEEEEeCCCC-CchhHHHHHHHHHHHHHHcCCceEEEEEeccC--CCCHHHHHHHHHHcCCCeEEEeeecccCccccccc
Q 025917 128 GVIIVDHGSR-RRESNLMLKQFVAMFREKTGYLIVEPAHMELA--EPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQD 204 (246)
Q Consensus 128 aLLLVgHGSr-~pean~~l~~lA~~L~~r~~~~~V~vAFLE~~--~PsL~eaLe~L~~qG~~rVvVVPlFL~~G~Hv~~D 204 (246)
++|+ . |+. |..+|....+=..++++..+ +++-+.|.. .-..++.++++.++|++=|+. .|..+
T Consensus 3 a~l~-~-g~~~D~~~n~~~~~G~~~~~~~~g---v~~~~~e~~~~~~~~~~~i~~~~~~g~dlIi~------~g~~~--- 68 (258)
T cd06353 3 AFVY-V-GPIGDQGWNYAHDEGRKAAEKALG---VEVTYVENVPEGADAERVLRELAAQGYDLIFG------TSFGF--- 68 (258)
T ss_pred EEEE-e-CCCCccchhHHHHHHHHHHHHhcC---CeEEEEecCCchHhHHHHHHHHHHcCCCEEEE------Cchhh---
Confidence 4455 3 554 67888887666667766533 456667643 224788899999999876666 33233
Q ss_pred HHHHHHHHHHhCCCceEEEcCCCCCCh
Q 025917 205 IPSLTAEAAKEHPGVPYIVTAPLGLHE 231 (246)
Q Consensus 205 Ip~~l~~~~~~~Pgv~I~va~PLG~~p 231 (246)
...+..+..+||+..+.+.......|
T Consensus 69 -~~~~~~vA~~~p~~~F~~~d~~~~~~ 94 (258)
T cd06353 69 -MDAALKVAKEYPDVKFEHCSGYKTAP 94 (258)
T ss_pred -hHHHHHHHHHCCCCEEEECCCCCCCC
Confidence 23566667789999888755433333
No 40
>PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family []. The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group [].; GO: 0005886 plasma membrane; PDB: 2HQB_A 3S99_A 2FQW_A 2FQY_A 2FQX_A.
Probab=69.54 E-value=67 Score=29.39 Aligned_cols=90 Identities=19% Similarity=0.160 Sum_probs=59.0
Q ss_pred EEEEeCCCC-CchhHHHHHHHHHHHHHHcCCceEEEEEeccCC---CCHHHHHHHHHHcCCCeEEEeeecccCccccccc
Q 025917 129 VIIVDHGSR-RRESNLMLKQFVAMFREKTGYLIVEPAHMELAE---PSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQD 204 (246)
Q Consensus 129 LLLVgHGSr-~pean~~l~~lA~~L~~r~~~~~V~vAFLE~~~---PsL~eaLe~L~~qG~~rVvVVPlFL~~G~Hv~~D 204 (246)
+.++.-|.. |..+|+...+=..++++.+ ..+++.+.|... ....++++.+.++|++=|++. |..+..
T Consensus 4 v~~~~~g~~~D~g~n~~~~~G~~~~~~~~--~~i~~~~~e~~~~~~~~~~~~~~~~~~~g~dlIi~~------g~~~~~- 74 (306)
T PF02608_consen 4 VALLDPGGINDKGFNQSAYEGLKRAEKEL--DGIEIIYVENVPETDADYEEAIRQLADQGYDLIIGH------GFEYSD- 74 (306)
T ss_dssp EEEESSS-CCCSSHHHHHHHHHHHHHHHC--TTEEEEEEES-S-TCHHHHHHHHHHHHTT-SEEEEE------SGGGHH-
T ss_pred EEEEECCCCCCccHHHHHHHHHHHHHHHc--CCceEEEEecCCccHHHHHHHHHHHHHcCCCEEEEc------cHHHHH-
Confidence 455566665 5789998888888888776 247888888543 357888899999998766554 333333
Q ss_pred HHHHHHHHHHhCCCceEEEcCCCCCC
Q 025917 205 IPSLTAEAAKEHPGVPYIVTAPLGLH 230 (246)
Q Consensus 205 Ip~~l~~~~~~~Pgv~I~va~PLG~~ 230 (246)
.+..+.++||++.+.+...-...
T Consensus 75 ---~~~~vA~~yPd~~F~~~d~~~~~ 97 (306)
T PF02608_consen 75 ---ALQEVAKEYPDTKFIIIDGYIDA 97 (306)
T ss_dssp ---HHHHHHTC-TTSEEEEESS---S
T ss_pred ---HHHHHHHHCCCCEEEEEecCcCC
Confidence 56667788999998876654443
No 41
>COG1744 Med Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein [General function prediction only]
Probab=58.10 E-value=1.4e+02 Score=28.27 Aligned_cols=95 Identities=20% Similarity=0.283 Sum_probs=64.2
Q ss_pred CCCcEEEEEeCCCCC-chhHHHHHHHHHHHHHHcCCceEEEEEec-cC---CCCHHHHHHHHHHcCCCeEEEeeecccCc
Q 025917 124 GDKDGVIIVDHGSRR-RESNLMLKQFVAMFREKTGYLIVEPAHME-LA---EPSIKDAFGSCVQQGANRVIVSPFFLFPG 198 (246)
Q Consensus 124 ~~~~aLLLVgHGSr~-pean~~l~~lA~~L~~r~~~~~V~vAFLE-~~---~PsL~eaLe~L~~qG~~rVvVVPlFL~~G 198 (246)
.+...+.++.+|..+ ..+|+....=.+.++...+. .+...|.+ .+ ....+++++.+.++|.+ +++. .|
T Consensus 33 ~~~~~~~~~~~g~~~D~s~n~~~~~g~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~g~~-lI~~-----~g 105 (345)
T COG1744 33 GKKKKVAVIDVGGIDDKSFNQSAYEGLLKAKKELGL-KVETYYWEYVQSDSEADYERALRALAEDGYD-LIFG-----TG 105 (345)
T ss_pred ccceEEEEEecCCCCccchhHHHHHHHHHHHHHhCC-ceEeeeeeecCCcchhHHHHHHHHHHhcCCC-EEEE-----ec
Confidence 345678888888884 66888887777788877664 46665555 22 24578888999888883 3332 34
Q ss_pred ccccccHHHHHHHHHHhCCCceEEEcCCCCC
Q 025917 199 RHWCQDIPSLTAEAAKEHPGVPYIVTAPLGL 229 (246)
Q Consensus 199 ~Hv~~DIp~~l~~~~~~~Pgv~I~va~PLG~ 229 (246)
.-..+ .+..+..++|++.+.+....-.
T Consensus 106 f~~~d----~~~~va~~~Pd~~F~iid~~~~ 132 (345)
T COG1744 106 FAFSD----ALEKVAAEYPDVKFVIIDGVVK 132 (345)
T ss_pred cchhh----HHHHHHHHCCCCEEEEecCccC
Confidence 44433 5566667899998888776443
No 42
>cd03414 CbiX_SirB_C Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), C-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both CbiX and SirB are found in a wide range of bacteria.
Probab=57.61 E-value=1.3 Score=34.64 Aligned_cols=39 Identities=5% Similarity=-0.041 Sum_probs=28.5
Q ss_pred HHHHhhcccCCCCCccchHHhhccChhhhcCCCceeeeeeccCccCCCCCC
Q 025917 44 LCKITSSLHKPSETPNSWKADQNMSVESLALSPQFTVKRCSIGEVGTKNPI 94 (246)
Q Consensus 44 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 94 (246)
=.+|..+.|.. |+|..+...+.. | ...+. +. .++|+ ||.
T Consensus 66 P~fL~~G~h~~-~i~~~~~~~~~~-~-------~~~i~-~~-~pLG~-~~~ 104 (117)
T cd03414 66 PYLLFTGVLMD-RIEEQVAELAAE-P-------GIEFV-LA-PPLGP-HPE 104 (117)
T ss_pred echhcCCchHH-HHHHHHHHHHhC-C-------CceEE-EC-CCCCC-CHH
Confidence 34678899986 899988888766 5 44454 44 58999 876
No 43
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.40 E-value=65 Score=25.80 Aligned_cols=66 Identities=9% Similarity=0.074 Sum_probs=52.1
Q ss_pred chhHHHHHHHHHHHHHHcCCceEEEEEeccCCCCHHHHHHHHHHcCCCeEEEeeecccCccccccc
Q 025917 139 RESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQD 204 (246)
Q Consensus 139 pean~~l~~lA~~L~~r~~~~~V~vAFLE~~~PsL~eaLe~L~~qG~~rVvVVPlFL~~G~Hv~~D 204 (246)
|.+.++.+=+...++++.|..+.++-|++..+|..++...++.+.=...=...|+.+..+..+.+-
T Consensus 23 PtsKdt~eWLeaalkRKyp~~~F~~~YiDI~n~~~e~~~~~~aekI~~dey~YPlivvedeiVaeG 88 (106)
T COG4837 23 PTSKDTYEWLEAALKRKYPNQPFKYTYIDITNPPLEDHDLQFAEKIEQDEYFYPLIVVEDEIVAEG 88 (106)
T ss_pred CcchhHHHHHHHHHhccCCCCCcEEEEEEcCCCccHHHHHHHHHHHhcccccceEEEEcceEeecC
Confidence 567778888888999999999999999999888888888777665445567788888777666443
No 44
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=48.72 E-value=7 Score=29.64 Aligned_cols=28 Identities=11% Similarity=0.113 Sum_probs=23.1
Q ss_pred HHHHHHhhcccCCCCCccchHHhhccCh
Q 025917 42 LILCKITSSLHKPSETPNSWKADQNMSV 69 (246)
Q Consensus 42 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 69 (246)
++=.+|..+.|.+.|||..++..+...+
T Consensus 63 vvPlfl~~G~h~~~dip~~~~~~~~~~~ 90 (101)
T cd03416 63 VVPLFLLAGGHVKEDIPAALAAARARHP 90 (101)
T ss_pred EEeeEeCCCccccccHHHHHHHHHHHCC
Confidence 3445788999999999999999887666
No 45
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=47.42 E-value=1.6e+02 Score=24.11 Aligned_cols=109 Identities=14% Similarity=0.154 Sum_probs=60.8
Q ss_pred EEEEeCC-CCCchhHHHHHHHHHHHHHHcCCceEEEEEeccCCCCHHHHHHHHHH-cCCCeEEEeeecccCcccccccHH
Q 025917 129 VIIVDHG-SRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQ-QGANRVIVSPFFLFPGRHWCQDIP 206 (246)
Q Consensus 129 LLLVgHG-Sr~pean~~l~~lA~~L~~r~~~~~V~vAFLE~~~PsL~eaLe~L~~-qG~~rVvVVPlFL~~G~Hv~~DIp 206 (246)
++++-|. ..-.+...++-..+.+|++..+. .|....+. ..+..++.+.++.. .|.++|+.+.---..+... ...-
T Consensus 3 lv~~e~~~~~l~~~~~e~l~~A~~La~~~g~-~v~av~~G-~~~~~~~~l~~~l~~~G~d~v~~~~~~~~~~~~~-~~~a 79 (164)
T PF01012_consen 3 LVFAEHRDGRLNPVSLEALEAARRLAEALGG-EVTAVVLG-PAEEAAEALRKALAKYGADKVYHIDDPALAEYDP-EAYA 79 (164)
T ss_dssp EEEE-EETCEE-HHHHHHHHHHHHHHHCTTS-EEEEEEEE-TCCCHHHHHHHHHHSTTESEEEEEE-GGGTTC-H-HHHH
T ss_pred EEEEECCCCccCHHHHHHHHHHHHHHhhcCC-eEEEEEEe-cchhhHHHHhhhhhhcCCcEEEEecCccccccCH-HHHH
Confidence 4444443 22234556677788889887754 56555554 44789999888877 8999999997655554433 2233
Q ss_pred HHHHHH-HHhCCCceEEEcCCCCCChHHHHHHHHHHhc
Q 025917 207 SLTAEA-AKEHPGVPYIVTAPLGLHEQLVVNNFVLSFA 243 (246)
Q Consensus 207 ~~l~~~-~~~~Pgv~I~va~PLG~~p~Lva~ll~~Ry~ 243 (246)
..+.++ ++.-|++ ++...=-....+ +-.+..|.+
T Consensus 80 ~~l~~~~~~~~~~l--Vl~~~t~~g~~l-a~~lA~~L~ 114 (164)
T PF01012_consen 80 DALAELIKEEGPDL--VLFGSTSFGRDL-APRLAARLG 114 (164)
T ss_dssp HHHHHHHHHHT-SE--EEEESSHHHHHH-HHHHHHHHT
T ss_pred HHHHHHHHhcCCCE--EEEcCcCCCCcH-HHHHHHHhC
Confidence 344443 3334453 444432222333 345555544
No 46
>KOG1321 consensus Protoheme ferro-lyase (ferrochelatase) [Coenzyme transport and metabolism]
Probab=47.00 E-value=85 Score=30.39 Aligned_cols=106 Identities=14% Similarity=0.268 Sum_probs=65.1
Q ss_pred CCcEEEEEeCCCCCc----------hhHHHHHHHHHHHHHHcCCce---EEEEEeccCCCCHHHHHHHHHHcCCCeEEEe
Q 025917 125 DKDGVIIVDHGSRRR----------ESNLMLKQFVAMFREKTGYLI---VEPAHMELAEPSIKDAFGSCVQQGANRVIVS 191 (246)
Q Consensus 125 ~~~aLLLVgHGSr~p----------ean~~l~~lA~~L~~r~~~~~---V~vAFLE~~~PsL~eaLe~L~~qG~~rVvVV 191 (246)
.+..|++-+||-.-. +-.+.+..+.++|+.++++.. -++|=+.--.|-.+++++.|-++|.+.++.|
T Consensus 226 ~~VVIlFSAHslPms~Vn~GDpY~~Ei~atv~~iMeeL~~~N~y~lawQSkVGP~pWL~p~Tde~i~~lgk~g~knll~V 305 (395)
T KOG1321|consen 226 DDVVILFSAHSLPMSVVNAGDPYPAEIAATVDLIMEELKYKNPYRLAWQSKVGPLPWLGPATDEVIEGLGKKGVKNLLLV 305 (395)
T ss_pred ccEEEEEecCCCcHHHHhcCCCcHHHHHHHHHHHHHHhccCCcchhhhhcccCCccccccchHHHHHHHHhhcccceEEE
Confidence 455677778886532 222345666677766666532 2333344345788999999999999999999
Q ss_pred eecccCcccccccHHHHH----HHHHHhCCCc-eEEEcCCCCCChHHH
Q 025917 192 PFFLFPGRHWCQDIPSLT----AEAAKEHPGV-PYIVTAPLGLHEQLV 234 (246)
Q Consensus 192 PlFL~~G~Hv~~DIp~~l----~~~~~~~Pgv-~I~va~PLG~~p~Lv 234 (246)
|.-+.. .|+ +-+.++= +.+.+. ++ .+.-.+.||.+|..+
T Consensus 306 PIaFvS-eHI-ETL~EiD~ey~e~a~k~--gve~~~Rv~sln~~p~fI 349 (395)
T KOG1321|consen 306 PIAFVS-EHI-ETLHEIDIEYIEEALKK--GVENWKRVESLNGNPTFI 349 (395)
T ss_pred eehhhh-HHH-HHHHHhhHHHHHHHHHH--hhhhheeccCCCCCccHH
Confidence 986543 454 2233221 111111 12 446788999998766
No 47
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=45.57 E-value=32 Score=27.18 Aligned_cols=69 Identities=12% Similarity=0.099 Sum_probs=43.4
Q ss_pred chhHHHHHHHHHHHHHHcCCceEEEEEeccCCCCHHHHHHHHHHcCCCeEEEeeecccCcccccccHHH
Q 025917 139 RESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQDIPS 207 (246)
Q Consensus 139 pean~~l~~lA~~L~~r~~~~~V~vAFLE~~~PsL~eaLe~L~~qG~~rVvVVPlFL~~G~Hv~~DIp~ 207 (246)
|.+.++++=+..+|+++.|..+..+-|+++..|.=.+.-+++.++=.+.=...|+.+..|.-+.+--|+
T Consensus 16 PsSkeTyeWL~aal~RKyp~~~f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV~i~~eiV~EGnp~ 84 (93)
T PF07315_consen 16 PSSKETYEWLEAALKRKYPDQPFEFTYIDIENPPENDHDQQFAERILEDELFYPLVVINDEIVAEGNPQ 84 (93)
T ss_dssp --HHHHHHHHHHHHHHH-TTS-EEEEEEETTT----HHHHHHHHHHHTTSS-SSEEEETTEEEEESS--
T ss_pred CCchhHHHHHHHHHhCcCCCCceEEEEEecCCCCccHHHHHHHHHHHhcccccceEEECCEEEecCCcc
Confidence 677888999999999999999999999998887655434344333233456789988888877654444
No 48
>PF01422 zf-NF-X1: NF-X1 type zinc finger; InterPro: IPR000967 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a domain presumed to be a zinc binding domain. The following pattern describes the zinc finger: C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C where X can be any amino acid, and numbers in brackets indicate the number of residues. The two position can be either His or Cys. This domain is found in the human transcriptional repressor NK-X1, a repressor of HLA-DRA transcription; the Drosophila shuttle craft protein, which plays an essential role during the late stages of embryonic neurogenesis; and a yeast hypothetical protein YNL023C. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=44.41 E-value=11 Score=21.80 Aligned_cols=9 Identities=67% Similarity=1.372 Sum_probs=7.3
Q ss_pred ccccCCCCc
Q 025917 22 QFPCHPGPV 30 (246)
Q Consensus 22 ~~~~~~~~~ 30 (246)
+.+||+||-
T Consensus 7 ~~~CH~G~C 15 (20)
T PF01422_consen 7 QQLCHPGPC 15 (20)
T ss_pred CCcccCCcC
Confidence 568999985
No 49
>cd01837 SGNH_plant_lipase_like SGNH_plant_lipase_like, a plant specific subfamily of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=41.89 E-value=34 Score=31.21 Aligned_cols=55 Identities=24% Similarity=0.308 Sum_probs=34.8
Q ss_pred CHHHHHHHHHHcCCCeEEEe--------eecccCc---------------ccccccHHHHHHHHHHhCCCceEEEcCC
Q 025917 172 SIKDAFGSCVQQGANRVIVS--------PFFLFPG---------------RHWCQDIPSLTAEAAKEHPGVPYIVTAP 226 (246)
Q Consensus 172 sL~eaLe~L~~qG~~rVvVV--------PlFL~~G---------------~Hv~~DIp~~l~~~~~~~Pgv~I~va~P 226 (246)
.+.+.|++|.+.|+++|+|. |.++... ......+.+.+++++.++|+.+|.+..-
T Consensus 165 ~i~~~v~~L~~~GAr~~~v~~lpplgc~P~~~~~~~~~~~~c~~~~n~~~~~~N~~L~~~l~~l~~~~~~~~i~~~D~ 242 (315)
T cd01837 165 NISSAIKRLYDLGARKFVVPGLGPLGCLPSQRTLFGGDGGGCLEELNELARLFNAKLKKLLAELRRELPGAKFVYADI 242 (315)
T ss_pred HHHHHHHHHHhCCCcEEEecCCCCcCccHHHHhhcCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeh
Confidence 35667889999999999885 4444321 0111234445566677788988876554
No 50
>PRK06091 membrane protein FdrA; Validated
Probab=39.51 E-value=4.4e+02 Score=27.10 Aligned_cols=134 Identities=12% Similarity=0.131 Sum_probs=71.0
Q ss_pred ccCCCCCCCCCCCCccccCCCCcccccccccCCCCCCCCCcEEEE----EeCCCCCchhHHHHHHHHHHHHHH-cCCceE
Q 025917 87 EVGTKNPIWVHPNSLNFQRGPSRTKHLSIKSSSRDGVGDKDGVII----VDHGSRRRESNLMLKQFVAMFREK-TGYLIV 161 (246)
Q Consensus 87 ~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~aLLL----VgHGSr~pean~~l~~lA~~L~~r-~~~~~V 161 (246)
.=.| ||- .||.+- -.||++.. ..++.++|| +|+|+....+...+..+.+.-..+ .+...+
T Consensus 385 ~Grp-HPM-IDp~~R--------~~~~~~~a-----~dp~~~VillD~vlGyGah~dpa~~l~~ai~~~~~~~~~~r~l~ 449 (555)
T PRK06091 385 VGRP-HPM-IDPTLR--------NQLIADLG-----AKPQVRVLLLDVVIGFGATADPAGSLVSAIQKACAARADGQPLY 449 (555)
T ss_pred CCCC-CCC-cChHHH--------HHHHHHhc-----cCCcceEEEEEeeeccCCCCChHHHHHHHHHHHHhhhhcCCceE
Confidence 4456 996 444332 23566442 346677765 689997544444333333321112 122234
Q ss_pred EEEEe---ccCCCCHHHHHHHHHHcCCCeEEEee-------------------------ecccCcccccccHHHHHHHHH
Q 025917 162 EPAHM---ELAEPSIKDAFGSCVQQGANRVIVSP-------------------------FFLFPGRHWCQDIPSLTAEAA 213 (246)
Q Consensus 162 ~vAFL---E~~~PsL~eaLe~L~~qG~~rVvVVP-------------------------lFL~~G~Hv~~DIp~~l~~~~ 213 (246)
-++++ +...+.+++..+.|.+.| ++|++ .++..-.-+.--+....+.++
T Consensus 450 ~v~~v~GT~~DpQ~~~~q~~~L~~aG---v~v~~sn~~a~~~a~~~~~~~~~~~~~~~~~l~~~~~vinvGl~~f~~~l~ 526 (555)
T PRK06091 450 AIATVTGTERDPQCRSQQIATLEDAG---IAVVDSLPEATLLAAALIRPLLSATQQHTPSLLENVAVINIGLRSFALDLQ 526 (555)
T ss_pred EEEEEeCCCCCCcCHHHHHHHHHhCC---eEEEcCcHHHHHHHHHHhhcccccccchhHHhcCCCcEEEeChHHHHHHHH
Confidence 45555 555677888888888877 34433 222221222222333344444
Q ss_pred HhC-CCceEEEcCCCCCChHHHHHHHH
Q 025917 214 KEH-PGVPYIVTAPLGLHEQLVVNNFV 239 (246)
Q Consensus 214 ~~~-Pgv~I~va~PLG~~p~Lva~ll~ 239 (246)
++. +-+++...+|-|-++.|+ .+|.
T Consensus 527 ~~g~~vv~~~W~Ppa~g~~~l~-~~l~ 552 (555)
T PRK06091 527 SAGKPVVHYQWAPVAGGNKKLA-RLLE 552 (555)
T ss_pred HcCCCeEeecCcCCCCCCHHHH-HHHH
Confidence 443 335667889999999876 6553
No 51
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=36.90 E-value=91 Score=27.20 Aligned_cols=43 Identities=21% Similarity=0.201 Sum_probs=32.4
Q ss_pred CHHHHHHHHHHcCCCeEEEeeecccCcccccccHHHHHHHHHHhCCCceEEE
Q 025917 172 SIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQDIPSLTAEAAKEHPGVPYIV 223 (246)
Q Consensus 172 sL~eaLe~L~~qG~~rVvVVPlFL~~G~Hv~~DIp~~l~~~~~~~Pgv~I~v 223 (246)
++..+++.|.+.|.++|.++=++.. ++.++.+.++||+++|..
T Consensus 139 Tl~~ai~~L~~~G~~~I~~~~ll~~---------~~gl~~l~~~~p~v~i~~ 181 (209)
T PRK00129 139 SAIAAIDLLKKRGAKNIKVLCLVAA---------PEGIKALEEAHPDVEIYT 181 (209)
T ss_pred HHHHHHHHHHHcCCCEEEEEEEecC---------HHHHHHHHHHCCCcEEEE
Confidence 6778889999999999988866322 345666777899988765
No 52
>PLN02428 lipoic acid synthase
Probab=36.48 E-value=4e+02 Score=25.65 Aligned_cols=98 Identities=14% Similarity=0.099 Sum_probs=56.9
Q ss_pred hhHHHHHHHHHHHHHHcCCceEEEEEeccCCCCHHHHHHHHHHcCCCeEEEeeec---ccC----cccccccHHHHHHHH
Q 025917 140 ESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFF---LFP----GRHWCQDIPSLTAEA 212 (246)
Q Consensus 140 ean~~l~~lA~~L~~r~~~~~V~vAFLE~~~PsL~eaLe~L~~qG~~rVvVVPlF---L~~----G~Hv~~DIp~~l~~~ 212 (246)
.....+.++.+.+++..|...+...+.++-. =++.++.+.+.|.+.+...+=. +++ -.+..++.-+.++.+
T Consensus 163 ~ga~~~~elir~Ir~~~P~i~Ie~L~pdf~~--d~elL~~L~eAG~d~i~hnlETv~rL~~~Ir~~~~sye~~Le~L~~a 240 (349)
T PLN02428 163 GGSGHFAETVRRLKQLKPEILVEALVPDFRG--DLGAVETVATSGLDVFAHNIETVERLQRIVRDPRAGYKQSLDVLKHA 240 (349)
T ss_pred ccHHHHHHHHHHHHHhCCCcEEEEeCccccC--CHHHHHHHHHcCCCEEccCccCcHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 3445788888999888775433332222211 1688999999998876655332 111 123335566677777
Q ss_pred HHhCCCceE--EEcCCCCCChHHHHHHHH
Q 025917 213 AKEHPGVPY--IVTAPLGLHEQLVVNNFV 239 (246)
Q Consensus 213 ~~~~Pgv~I--~va~PLG~~p~Lva~ll~ 239 (246)
++..||+.+ .+.=.||..++=+.+++.
T Consensus 241 k~~~pGi~tkSg~MvGLGET~Edv~e~l~ 269 (349)
T PLN02428 241 KESKPGLLTKTSIMLGLGETDEEVVQTME 269 (349)
T ss_pred HHhCCCCeEEEeEEEecCCCHHHHHHHHH
Confidence 777777654 233344766654444443
No 53
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=32.93 E-value=1.2e+02 Score=23.92 Aligned_cols=22 Identities=32% Similarity=0.382 Sum_probs=14.1
Q ss_pred EEEEEeCCCCCchhHHHHHHHHHHHH
Q 025917 128 GVIIVDHGSRRRESNLMLKQFVAMFR 153 (246)
Q Consensus 128 aLLLVgHGSr~pean~~l~~lA~~L~ 153 (246)
.+||++||+ ....+...++++.
T Consensus 2 ~ili~sHG~----~A~gi~~~~~~i~ 23 (122)
T cd00006 2 GIIIATHGG----FASGLLNSAEMIL 23 (122)
T ss_pred eEEEEcCHH----HHHHHHHHHHHhc
Confidence 589999993 2334555555553
No 54
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=32.65 E-value=1e+02 Score=26.85 Aligned_cols=44 Identities=20% Similarity=0.292 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHcCCCeEEEeeecccCcccccccHHHHHHHHHHhCCCceEEEc
Q 025917 172 SIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQDIPSLTAEAAKEHPGVPYIVT 224 (246)
Q Consensus 172 sL~eaLe~L~~qG~~rVvVVPlFL~~G~Hv~~DIp~~l~~~~~~~Pgv~I~va 224 (246)
++..+++.|.+.|.++|.++=++.. ++.++.+.+.||+++|..+
T Consensus 137 Tl~~ai~~L~~~G~~~I~v~~ll~~---------~~gl~~l~~~~p~v~i~~~ 180 (207)
T TIGR01091 137 TMIAALDLLKKRGAKKIKVLSIVAA---------PEGIEAVEKAHPDVDIYTA 180 (207)
T ss_pred HHHHHHHHHHHcCCCEEEEEEEecC---------HHHHHHHHHHCCCCEEEEE
Confidence 6778889999999999888866322 3456667778999887654
No 55
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=32.58 E-value=2.5e+02 Score=24.83 Aligned_cols=67 Identities=18% Similarity=0.260 Sum_probs=35.8
Q ss_pred CcEEEEEeCCCCCch-hHHHHHHHHHHHHHHcCCceEEE---EEeccC---------CCCHHHHHHHHHHc--CCCeEEE
Q 025917 126 KDGVIIVDHGSRRRE-SNLMLKQFVAMFREKTGYLIVEP---AHMELA---------EPSIKDAFGSCVQQ--GANRVIV 190 (246)
Q Consensus 126 ~~aLLLVgHGSr~pe-an~~l~~lA~~L~~r~~~~~V~v---AFLE~~---------~PsL~eaLe~L~~q--G~~rVvV 190 (246)
+.++|++-||+.... .......+++.+.++ ++.-+.+ ++-+.. ..++.++++.+.++ |.++|++
T Consensus 26 ~~~vv~i~gg~~~~~g~~~~~~~la~~l~~~-G~~v~~~Dl~G~G~S~~~~~~~~~~~~d~~~~~~~l~~~~~g~~~i~l 104 (274)
T TIGR03100 26 TTGVLIVVGGPQYRVGSHRQFVLLARRLAEA-GFPVLRFDYRGMGDSEGENLGFEGIDADIAAAIDAFREAAPHLRRIVA 104 (274)
T ss_pred CCeEEEEeCCccccCCchhHHHHHHHHHHHC-CCEEEEeCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCCcEEE
Confidence 457888888875432 334456778888764 3321111 111100 01355666666554 6677777
Q ss_pred eee
Q 025917 191 SPF 193 (246)
Q Consensus 191 VPl 193 (246)
+=.
T Consensus 105 ~G~ 107 (274)
T TIGR03100 105 WGL 107 (274)
T ss_pred EEE
Confidence 643
No 56
>cd01846 fatty_acyltransferase_like Fatty acyltransferase-like subfamily of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Might catalyze fatty acid transfer between phosphatidylcholine and sterols.
Probab=32.42 E-value=98 Score=27.07 Aligned_cols=54 Identities=24% Similarity=0.380 Sum_probs=33.1
Q ss_pred CHHHHHHHHHHcCCCeEEEe--------eecccCccc-----------ccccHHHHHHHHHHhCCCceEEEcC
Q 025917 172 SIKDAFGSCVQQGANRVIVS--------PFFLFPGRH-----------WCQDIPSLTAEAAKEHPGVPYIVTA 225 (246)
Q Consensus 172 sL~eaLe~L~~qG~~rVvVV--------PlFL~~G~H-----------v~~DIp~~l~~~~~~~Pgv~I~va~ 225 (246)
.+.+.+++|.+.|.++|+|+ |++...... ...-+.+.++++++++|+.+|.+..
T Consensus 132 ~~~~~i~~l~~~g~~~i~v~~~p~~~~~P~~~~~~~~~~~~~~~~~~~~N~~L~~~l~~l~~~~~~~~i~~~D 204 (270)
T cd01846 132 NLFQALQRLYAAGARNFLVLNLPDLGLTPAFQAQGDAVAARATALTAAYNAKLAEKLAELKAQHPGVNILLFD 204 (270)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCCCCCCcccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 46677788888899988775 555443321 1122334555566678888777643
No 57
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=32.30 E-value=2.3e+02 Score=21.95 Aligned_cols=70 Identities=16% Similarity=0.114 Sum_probs=32.9
Q ss_pred EEEEEeCCCCCchhHHHHHHHHHHHHHHcCCceEEEEEeccCCC-CHHHHHHHHHHc-CCCeEEEeeecccCcccc
Q 025917 128 GVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEP-SIKDAFGSCVQQ-GANRVIVSPFFLFPGRHW 201 (246)
Q Consensus 128 aLLLVgHGSr~pean~~l~~lA~~L~~r~~~~~V~vAFLE~~~P-sL~eaLe~L~~q-G~~rVvVVPlFL~~G~Hv 201 (246)
++||++||+ ....+...++++..........++|..-..+ .+.+.+++.+++ .-..=+++=.=++.|.-.
T Consensus 1 giii~sHG~----~A~g~~~~~~~i~G~~~~~i~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~vlil~Dl~ggsp~ 72 (116)
T PF03610_consen 1 GIIIASHGS----LAEGLLESAEMILGEDQDNIEAVDLYPDESIEDFEEKLEEAIEELDEGDGVLILTDLGGGSPF 72 (116)
T ss_dssp EEEEEEETT----HHHHHHHHHHHHHTSTCSSEEEEEETTTSCHHHHHHHHHHHHHHCCTTSEEEEEESSTTSHHH
T ss_pred CEEEEECcH----HHHHHHHHHHHHcCCCcccEEEEECcCCCCHHHHHHHHHHHHHhccCCCcEEEEeeCCCCccc
Confidence 589999993 3344556666665431112233455532211 233444444422 223334443445555544
No 58
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=31.80 E-value=2.5e+02 Score=22.96 Aligned_cols=55 Identities=15% Similarity=0.215 Sum_probs=27.8
Q ss_pred EEEeCCCCCchhHHHHHHHHHHHHHHcCCceEEEEEeccCCCCHHHHHHHHHHcCCCeEEE
Q 025917 130 IIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIV 190 (246)
Q Consensus 130 LLVgHGSr~pean~~l~~lA~~L~~r~~~~~V~vAFLE~~~PsL~eaLe~L~~qG~~rVvV 190 (246)
|+|+|| ++..+...++.+.+.+ +..++.+.--.-...++-+.+++..++ ++-.+|
T Consensus 2 VFIvhg-~~~~~~~~v~~~L~~~----~~ep~i~~~~~~~g~tiie~le~~~~~-~~faIv 56 (125)
T PF10137_consen 2 VFIVHG-RDLAAAEAVERFLEKL----GLEPIIWHEQPNLGQTIIEKLEEAADS-VDFAIV 56 (125)
T ss_pred EEEEeC-CCHHHHHHHHHHHHhC----CCceEEeecCCCCCCchHHHHHHHhcc-CCEEEE
Confidence 689999 7776666555555433 333332222212223444566655443 443443
No 59
>smart00438 ZnF_NFX Repressor of transcription.
Probab=31.04 E-value=23 Score=21.66 Aligned_cols=10 Identities=60% Similarity=1.182 Sum_probs=7.4
Q ss_pred ccccCCCCcc
Q 025917 22 QFPCHPGPVN 31 (246)
Q Consensus 22 ~~~~~~~~~~ 31 (246)
+-+||+||--
T Consensus 7 ~~~CH~G~C~ 16 (26)
T smart00438 7 QKLCHPGPCP 16 (26)
T ss_pred CCCCCCCcCc
Confidence 4579999853
No 60
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=30.03 E-value=3.9e+02 Score=23.56 Aligned_cols=78 Identities=12% Similarity=0.093 Sum_probs=49.0
Q ss_pred cEEEEEeCCCCCchhHHHHHHHHHHHHHHcCCceEEEEEeccCCCCHHHHHHHHHHcCCCeEEEeeecccCcccccccHH
Q 025917 127 DGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQDIP 206 (246)
Q Consensus 127 ~aLLLVgHGSr~pean~~l~~lA~~L~~r~~~~~V~vAFLE~~~PsL~eaLe~L~~qG~~rVvVVPlFL~~G~Hv~~DIp 206 (246)
+.+.+|... ++..+...+.+.+.+++. +...|..-.++....++...++++.+.+.+-|++.- ...++.
T Consensus 136 ~~v~iv~~~--~~~g~~~~~~~~~~~~~~-G~~vv~~~~~~~~~~d~~~~~~~l~~~~~d~v~~~~--------~~~~~~ 204 (343)
T PF13458_consen 136 KKVAIVYPD--DPYGRSLAEAFRKALEAA-GGKVVGEIRYPPGDTDFSALVQQLKSAGPDVVVLAG--------DPADAA 204 (343)
T ss_dssp SEEEEEEES--SHHHHHHHHHHHHHHHHT-TCEEEEEEEE-TTSSHHHHHHHHHHHTTTSEEEEES--------THHHHH
T ss_pred cEEEEEecC--chhhhHHHHHHHHHHhhc-CceeccceecccccccchHHHHHHhhcCCCEEEEec--------cchhHH
Confidence 456666544 556666677777777765 555555666666678899999999998887644431 123455
Q ss_pred HHHHHHHHh
Q 025917 207 SLTAEAAKE 215 (246)
Q Consensus 207 ~~l~~~~~~ 215 (246)
..++.+++.
T Consensus 205 ~~~~~~~~~ 213 (343)
T PF13458_consen 205 AFLRQLRQL 213 (343)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhh
Confidence 555555543
No 61
>COG1964 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=28.91 E-value=3.2e+02 Score=27.55 Aligned_cols=70 Identities=11% Similarity=0.183 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHcCCceEEEEEeccCCCCHHHHH----HHHHHcCCCeEEEeeecccCcccccccHHHHHHHHHHhCC
Q 025917 142 NLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAF----GSCVQQGANRVIVSPFFLFPGRHWCQDIPSLTAEAAKEHP 217 (246)
Q Consensus 142 n~~l~~lA~~L~~r~~~~~V~vAFLE~~~PsL~eaL----e~L~~qG~~rVvVVPlFL~~G~Hv~~DIp~~l~~~~~~~P 217 (246)
-+.++++++.++...|...+.+=|.. ++|++.+-| ....+.|+++|.+. ..|.+..+| ++..+.+++++.
T Consensus 93 ~eqi~~Ml~~lk~e~p~~~~aIq~tG-GEPTvr~DL~eiv~~a~e~g~~hVqin----TnGirlA~~-~~~~~~l~~ag~ 166 (475)
T COG1964 93 LEQIREMLRNLKKEHPVGANAVQFTG-GEPTLRDDLIEIIKIAREEGYDHVQLN----TNGIRLAFD-PEYVKKLREAGV 166 (475)
T ss_pred HHHHHHHHHHHHhcCCCCCceeEecC-CCccchhhHHHHHHHHhhcCccEEEEc----cCceeeccC-HHHHHHHHhcCC
Confidence 45677888888777665545555554 678776554 44456688888876 577777655 556666666543
No 62
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=28.65 E-value=3.9e+02 Score=23.17 Aligned_cols=70 Identities=16% Similarity=0.187 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHcCCceEEEEEeccCC-----CCHHHHHHHHHHcCCCeEEEeeecccCcccccccHHHHHHHHHHhCCCc
Q 025917 145 LKQFVAMFREKTGYLIVEPAHMELAE-----PSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQDIPSLTAEAAKEHPGV 219 (246)
Q Consensus 145 l~~lA~~L~~r~~~~~V~vAFLE~~~-----PsL~eaLe~L~~qG~~rVvVVPlFL~~G~Hv~~DIp~~l~~~~~~~Pgv 219 (246)
+....+..++. + ..|.+.+..... ..+.+.++.+.+.|++.|.+... -|....+++.+.++.+++..+++
T Consensus 117 ~~~~i~~a~~~-G-~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt---~G~~~P~~v~~li~~l~~~~~~~ 191 (265)
T cd03174 117 AEEAIEAAKEA-G-LEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLKDT---VGLATPEEVAELVKALREALPDV 191 (265)
T ss_pred HHHHHHHHHHC-C-CeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEechh---cCCcCHHHHHHHHHHHHHhCCCC
Confidence 34444445543 3 346555543322 23567777888889999997766 67777778888888888887753
No 63
>PRK08444 hypothetical protein; Provisional
Probab=28.37 E-value=3.7e+02 Score=25.61 Aligned_cols=76 Identities=13% Similarity=0.108 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHcCCceEEEE---Eecc-------------C----C-----CCHHHHH---HHHHHcCCCeEEEeeec
Q 025917 143 LMLKQFVAMFREKTGYLIVEPA---HMEL-------------A----E-----PSIKDAF---GSCVQQGANRVIVSPFF 194 (246)
Q Consensus 143 ~~l~~lA~~L~~r~~~~~V~vA---FLE~-------------~----~-----PsL~eaL---e~L~~qG~~rVvVVPlF 194 (246)
..+...|++++++.-+..|+++ +++. . . =+.++.+ .+..+.|++++.++
T Consensus 27 ~~L~~~A~~vR~~~~G~~Vt~~~n~~In~TN~C~~~C~FCaf~~~~~~~~~y~ls~eeI~~~a~~a~~~G~~ei~iv--- 103 (353)
T PRK08444 27 FTLGKYADKKRTKLHGKKVYFNVNRHINPTNICADVCKFCAFSAHRKNPNPYTMSHEEILEIVKNSVKRGIKEVHIV--- 103 (353)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEecCCcccccccccCCccCCCccCCCCCccccCCHHHHHHHHHHHHHCCCCEEEEe---
Confidence 4678889999877655556544 2311 0 0 1344444 45566899999998
Q ss_pred ccCccccccc---HHHHHHHHHHhCCCceEEE
Q 025917 195 LFPGRHWCQD---IPSLTAEAAKEHPGVPYIV 223 (246)
Q Consensus 195 L~~G~Hv~~D---Ip~~l~~~~~~~Pgv~I~v 223 (246)
.|.|...+ +.+.+..+++.+|++.+..
T Consensus 104 --~G~~p~~~~e~y~e~ir~Ik~~~p~i~i~a 133 (353)
T PRK08444 104 --SAHNPNYGYEWYLEIFKKIKEAYPNLHVKA 133 (353)
T ss_pred --ccCCCCCCHHHHHHHHHHHHHHCCCceEee
Confidence 45554433 3466777888899887763
No 64
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=27.89 E-value=1.7e+02 Score=22.14 Aligned_cols=62 Identities=15% Similarity=0.232 Sum_probs=33.2
Q ss_pred EEEEeCCCCCchhHHHHHHHHHHHHHHcCCceEEEEEeccC----CCCHHHHHHHHH--HcCCCeEEEeee
Q 025917 129 VIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELA----EPSIKDAFGSCV--QQGANRVIVSPF 193 (246)
Q Consensus 129 LLLVgHGSr~pean~~l~~lA~~L~~r~~~~~V~vAFLE~~----~PsL~eaLe~L~--~qG~~rVvVVPl 193 (246)
+||+.||.... ...+..+++.+.+. ++..+.+-+-... .+.+++.++.+. ....++|+++=+
T Consensus 1 ~vv~~HG~~~~--~~~~~~~~~~l~~~-G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~ 68 (145)
T PF12695_consen 1 VVVLLHGWGGS--RRDYQPLAEALAEQ-GYAVVAFDYPGHGDSDGADAVERVLADIRAGYPDPDRIILIGH 68 (145)
T ss_dssp EEEEECTTTTT--THHHHHHHHHHHHT-TEEEEEESCTTSTTSHHSHHHHHHHHHHHHHHCTCCEEEEEEE
T ss_pred CEEEECCCCCC--HHHHHHHHHHHHHC-CCEEEEEecCCCCccchhHHHHHHHHHHHhhcCCCCcEEEEEE
Confidence 47888998764 33477888888776 5532222211111 123444444431 135667776644
No 65
>PRK15381 pathogenicity island 2 effector protein SseJ; Provisional
Probab=26.69 E-value=1.3e+02 Score=29.46 Aligned_cols=54 Identities=15% Similarity=0.145 Sum_probs=34.2
Q ss_pred HHHHHHHHHHcCCCeEEEe--------eecccCcc--c-------ccccHHHHHHHHHHhCCCceEEEcCC
Q 025917 173 IKDAFGSCVQQGANRVIVS--------PFFLFPGR--H-------WCQDIPSLTAEAAKEHPGVPYIVTAP 226 (246)
Q Consensus 173 L~eaLe~L~~qG~~rVvVV--------PlFL~~G~--H-------v~~DIp~~l~~~~~~~Pgv~I~va~P 226 (246)
+.+.+++|.+.|+++|+|. |+...... . ...-+.+.++++++++|+.+|.+.+-
T Consensus 263 ~~~~l~~Ly~lGARk~vV~nlpPlGC~P~~~~~~~~~~~N~~a~~fN~~L~~~L~~L~~~~pg~~ivy~D~ 333 (408)
T PRK15381 263 QIDDIEKIISGGVNNVLVMGIPDLSLTPYGKHSDEKRKLKDESIAHNALLKTNVEELKEKYPQHKICYYET 333 (408)
T ss_pred HHHHHHHHHHcCCcEEEEeCCCCCCCcchhhccCchHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEh
Confidence 4456788899999999997 55543211 0 11123345556677889988877554
No 66
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=26.18 E-value=2.7e+02 Score=23.69 Aligned_cols=16 Identities=0% Similarity=0.237 Sum_probs=7.0
Q ss_pred HHHHHHHcCCCeEEEe
Q 025917 176 AFGSCVQQGANRVIVS 191 (246)
Q Consensus 176 aLe~L~~qG~~rVvVV 191 (246)
.++.+..+++.-+++.
T Consensus 49 ~i~~~~~~~~dgiIi~ 64 (271)
T cd06321 49 QIDNFIAAKVDLILLN 64 (271)
T ss_pred HHHHHHHhCCCEEEEe
Confidence 3344444444444443
No 67
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=26.14 E-value=3e+02 Score=24.80 Aligned_cols=66 Identities=14% Similarity=0.128 Sum_probs=36.1
Q ss_pred HHHHHHHHHHcCCceEEEEEeccCCCCHHHHHHHHHHcCCCeEEEe-eecccCcccccccHHHHHHHHHHhCCCceEEEc
Q 025917 146 KQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVS-PFFLFPGRHWCQDIPSLTAEAAKEHPGVPYIVT 224 (246)
Q Consensus 146 ~~lA~~L~~r~~~~~V~vAFLE~~~PsL~eaLe~L~~qG~~rVvVV-PlFL~~G~Hv~~DIp~~l~~~~~~~Pgv~I~va 224 (246)
+++.+++++..+..++. . +....++.|.+.|++||.|+ || ..|+-+.+.++-+. .|+++.-.
T Consensus 89 ~~~~~~i~~~~~g~p~t-------t-~~~A~~~AL~alg~~RIalvTPY--------~~~v~~~~~~~l~~-~G~eV~~~ 151 (239)
T TIGR02990 89 DEVTRAINAAKPGTPVV-------T-PSSAAVDGLAALGVRRISLLTPY--------TPETSRPMAQYFAV-RGFEIVNF 151 (239)
T ss_pred HHHHHHHHhcCCCCCee-------C-HHHHHHHHHHHcCCCEEEEECCC--------cHHHHHHHHHHHHh-CCcEEeee
Confidence 35666666543444442 2 24556667777799999887 65 34555555444322 24555444
Q ss_pred CCCC
Q 025917 225 APLG 228 (246)
Q Consensus 225 ~PLG 228 (246)
..+|
T Consensus 152 ~~~~ 155 (239)
T TIGR02990 152 TCLG 155 (239)
T ss_pred eccC
Confidence 3444
No 68
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=26.01 E-value=2.9e+02 Score=23.56 Aligned_cols=57 Identities=12% Similarity=0.102 Sum_probs=30.6
Q ss_pred CCC-CCchhHHHHHHHHHHHHHHcCCceEEEEEecc-CCCCHHHHHHHHHHcCCCeEEEee
Q 025917 134 HGS-RRRESNLMLKQFVAMFREKTGYLIVEPAHMEL-AEPSIKDAFGSCVQQGANRVIVSP 192 (246)
Q Consensus 134 HGS-r~pean~~l~~lA~~L~~r~~~~~V~vAFLE~-~~PsL~eaLe~L~~qG~~rVvVVP 192 (246)
+.. .++.+...++.+.+.+++. ++ .+.+.+.+. ......+.++.+..++++-+++.|
T Consensus 7 ~~~~~~~~~~~~~~g~~~~~~~~-g~-~v~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~ 65 (271)
T cd06312 7 HGPAGDPFWTVVKNGAEDAAKDL-GV-DVEYRGPETFDVADMARLIEAAIAAKPDGIVVTI 65 (271)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHh-CC-EEEEECCCCCCHHHHHHHHHHHHHhCCCEEEEeC
Confidence 444 5556666666666666553 32 344444432 112233556666666777777766
No 69
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=25.83 E-value=2.4e+02 Score=24.53 Aligned_cols=75 Identities=9% Similarity=0.200 Sum_probs=39.3
Q ss_pred HHHcCCceEEEEEeccCCCCHHHHHHHHHHcCCCeEEEeeeccc-CcccccccHHHHHHHHHHhCCCceEEEcCCCCC
Q 025917 153 REKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLF-PGRHWCQDIPSLTAEAAKEHPGVPYIVTAPLGL 229 (246)
Q Consensus 153 ~~r~~~~~V~vAFLE~~~PsL~eaLe~L~~qG~~rVvVVPlFL~-~G~Hv~~DIp~~l~~~~~~~Pgv~I~va~PLG~ 229 (246)
..+.+...+-.||-. .--++..+.+++++---.++++=+..- .-..+.+.+...++.+++.||+..|.+..++..
T Consensus 29 aR~l~~~~iNLGfsG--~~~le~~~a~~ia~~~a~~~~ld~~~N~~~~~~~~~~~~fv~~iR~~hP~tPIllv~~~~~ 104 (178)
T PF14606_consen 29 ARRLGLDVINLGFSG--NGKLEPEVADLIAEIDADLIVLDCGPNMSPEEFRERLDGFVKTIREAHPDTPILLVSPIPY 104 (178)
T ss_dssp HHHHT-EEEEEE-TC--CCS--HHHHHHHHHS--SEEEEEESHHCCTTTHHHHHHHHHHHHHTT-SSS-EEEEE----
T ss_pred HHHcCCCeEeeeecC--ccccCHHHHHHHhcCCCCEEEEEeecCCCHHHHHHHHHHHHHHHHHhCCCCCEEEEecCCc
Confidence 334466678888874 334555554444433335666644433 334445566677888999999999998887763
No 70
>PRK13604 luxD acyl transferase; Provisional
Probab=25.81 E-value=3.2e+02 Score=25.76 Aligned_cols=66 Identities=14% Similarity=0.222 Sum_probs=42.9
Q ss_pred CCcEEEEEeCCCCCchhHHHHHHHHHHHHHHcCCceEEEEEecc---CC------------CCHHHHHHHHHHcCCCeEE
Q 025917 125 DKDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMEL---AE------------PSIKDAFGSCVQQGANRVI 189 (246)
Q Consensus 125 ~~~aLLLVgHGSr~pean~~l~~lA~~L~~r~~~~~V~vAFLE~---~~------------PsL~eaLe~L~~qG~~rVv 189 (246)
++...++++||-.... ..+..+|+.|.++ |+.-+++=|-.. +. -++..+++.+.+++.++|.
T Consensus 35 ~~~~~vIi~HGf~~~~--~~~~~~A~~La~~-G~~vLrfD~rg~~GeS~G~~~~~t~s~g~~Dl~aaid~lk~~~~~~I~ 111 (307)
T PRK13604 35 KKNNTILIASGFARRM--DHFAGLAEYLSSN-GFHVIRYDSLHHVGLSSGTIDEFTMSIGKNSLLTVVDWLNTRGINNLG 111 (307)
T ss_pred CCCCEEEEeCCCCCCh--HHHHHHHHHHHHC-CCEEEEecCCCCCCCCCCccccCcccccHHHHHHHHHHHHhcCCCceE
Confidence 4557888899998854 3488999999865 554444433211 11 1455668888887777877
Q ss_pred Eeee
Q 025917 190 VSPF 193 (246)
Q Consensus 190 VVPl 193 (246)
++=.
T Consensus 112 LiG~ 115 (307)
T PRK13604 112 LIAA 115 (307)
T ss_pred EEEE
Confidence 7643
No 71
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=24.91 E-value=4.3e+02 Score=22.36 Aligned_cols=40 Identities=10% Similarity=0.184 Sum_probs=27.3
Q ss_pred ccCcccc-cccHHHHHHHHHHhC-CCceEEEcCCCCCChHHH
Q 025917 195 LFPGRHW-CQDIPSLTAEAAKEH-PGVPYIVTAPLGLHEQLV 234 (246)
Q Consensus 195 L~~G~Hv-~~DIp~~l~~~~~~~-Pgv~I~va~PLG~~p~Lv 234 (246)
=-.|..+ ..++.+.++.+.... .++.+.++.|.|.++.+.
T Consensus 74 De~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGGa~G~~~~v~ 115 (157)
T PRK00103 74 DERGKQLSSEEFAQELERWRDDGRSDVAFVIGGADGLSPAVK 115 (157)
T ss_pred cCCCCcCCHHHHHHHHHHHHhcCCccEEEEEcCccccCHHHH
Confidence 3456444 445666677665544 378999999999988864
No 72
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=24.76 E-value=4.3e+02 Score=22.36 Aligned_cols=94 Identities=14% Similarity=0.211 Sum_probs=56.6
Q ss_pred CcEEEEEeCCCCCchhHHHHHHHHHHHHHHcCCceEEEEEeccCCCCHHHHHHHHHHcCCCeEEEeeecccCcccccccH
Q 025917 126 KDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQDI 205 (246)
Q Consensus 126 ~~aLLLVgHGSr~pean~~l~~lA~~L~~r~~~~~V~vAFLE~~~PsL~eaLe~L~~qG~~rVvVVPlFL~~G~Hv~~DI 205 (246)
+.-+++.-=|... -+.-..-+++.++. .++.-+..+.. .+.+|++++.+++...-|.|.-+ .|.|. .++
T Consensus 12 rprvlvak~GlDg--Hd~gakvia~~l~d-~GfeVi~~g~~----~tp~e~v~aA~~~dv~vIgvSsl---~g~h~-~l~ 80 (143)
T COG2185 12 RPRVLVAKLGLDG--HDRGAKVIARALAD-AGFEVINLGLF----QTPEEAVRAAVEEDVDVIGVSSL---DGGHL-TLV 80 (143)
T ss_pred CceEEEeccCccc--cccchHHHHHHHHh-CCceEEecCCc----CCHHHHHHHHHhcCCCEEEEEec---cchHH-HHH
Confidence 4557777667431 11122344455554 36644444433 35689999988877766666544 88887 589
Q ss_pred HHHHHHHHHhCCCc-eEEEcCCCCCC
Q 025917 206 PSLTAEAAKEHPGV-PYIVTAPLGLH 230 (246)
Q Consensus 206 p~~l~~~~~~~Pgv-~I~va~PLG~~ 230 (246)
|+.++.++++..+- .+.++..+.+.
T Consensus 81 ~~lve~lre~G~~~i~v~~GGvip~~ 106 (143)
T COG2185 81 PGLVEALREAGVEDILVVVGGVIPPG 106 (143)
T ss_pred HHHHHHHHHhCCcceEEeecCccCch
Confidence 99999999887653 33444444433
No 73
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=24.37 E-value=2.3e+02 Score=25.68 Aligned_cols=45 Identities=13% Similarity=0.208 Sum_probs=34.6
Q ss_pred CCCCHHHHHHHHHHcCCCeEEEeeecccCcccccccHHHHHHHHHHhCCCceEEEc
Q 025917 169 AEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQDIPSLTAEAAKEHPGVPYIVT 224 (246)
Q Consensus 169 ~~PsL~eaLe~L~~qG~~rVvVVPlFL~~G~Hv~~DIp~~l~~~~~~~Pgv~I~va 224 (246)
++|.++..+++|.+.|...|+|| -|. +.++..-++..| ++++++.
T Consensus 30 g~plIErqI~~L~e~gI~dI~IV-----vGY-----lkE~FeYLkdKy-~vtLvyN 74 (231)
T COG4750 30 GEPLIERQIEQLREAGIDDITIV-----VGY-----LKEQFEYLKDKY-DVTLVYN 74 (231)
T ss_pred CcccHHHHHHHHHHCCCceEEEE-----eee-----hHHHHHHHHHhc-CeEEEeC
Confidence 57999999999999999999998 233 334677777777 6766654
No 74
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=24.22 E-value=36 Score=32.38 Aligned_cols=17 Identities=41% Similarity=0.757 Sum_probs=14.4
Q ss_pred cCCCCccchhhchhhHH
Q 025917 25 CHPGPVNDIVSLSSSIA 41 (246)
Q Consensus 25 ~~~~~~~~~~~~~~~~~ 41 (246)
-||||||-.+.+++.+.
T Consensus 269 mHP~PvnR~~EI~~~v~ 285 (316)
T COG0540 269 MHPLPVNRVVEIASEVD 285 (316)
T ss_pred ECCCCccCCCcCchhhh
Confidence 49999999999888763
No 75
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=23.56 E-value=2e+02 Score=27.52 Aligned_cols=50 Identities=18% Similarity=0.171 Sum_probs=34.9
Q ss_pred CHHHHHHHHHHcCCCeEEEeeecccC------cccc---cccHHHHHHHHHHhCCCceE
Q 025917 172 SIKDAFGSCVQQGANRVIVSPFFLFP------GRHW---CQDIPSLTAEAAKEHPGVPY 221 (246)
Q Consensus 172 sL~eaLe~L~~qG~~rVvVVPlFL~~------G~Hv---~~DIp~~l~~~~~~~Pgv~I 221 (246)
.+.+.++++.+.|.+.|+++|.--.. |... +.=+++.+...++++|++-|
T Consensus 52 ~l~~~~~~~~~~Gi~~v~LFgv~~~~~Kd~~~gs~a~~~~g~v~~air~iK~~~pdl~v 110 (320)
T cd04824 52 RLEEFLRPLVAKGLRSVILFGVPLKPGKDDRSGSAADDEDGPVIQAIKLIREEFPELLI 110 (320)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCccccCCcCccccccCCCChHHHHHHHHHHhCCCcEE
Confidence 56677888899999999999983110 2221 11257888889999998643
No 76
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=23.27 E-value=3.9e+02 Score=22.38 Aligned_cols=54 Identities=24% Similarity=0.285 Sum_probs=23.4
Q ss_pred CCchhHHHHHHHHHHHHHHcCCceEEEEEeccCCCCHHHHHHHHHHcCCCeEEEee
Q 025917 137 RRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSP 192 (246)
Q Consensus 137 r~pean~~l~~lA~~L~~r~~~~~V~vAFLE~~~PsL~eaLe~L~~qG~~rVvVVP 192 (246)
.++.+...+..+.+.+++. ++ .+.+.+.+.......+.++.+...+++-|++.|
T Consensus 10 ~~~~~~~~~~~i~~~a~~~-g~-~~~~~~~~~~~~~~~~~~~~l~~~~~dgiii~~ 63 (267)
T cd06283 10 TNPFSSLVLKGIEDVCRAH-GY-QVLVCNSDNDPEKEKEYLESLLAYQVDGLIVNP 63 (267)
T ss_pred ccccHHHHHHHHHHHHHHc-CC-EEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEeC
Confidence 3444444455555555443 32 232322221112233444555555555555554
No 77
>PRK05926 hypothetical protein; Provisional
Probab=23.12 E-value=6.7e+02 Score=24.02 Aligned_cols=86 Identities=14% Similarity=0.120 Sum_probs=52.6
Q ss_pred cEEEEEeCCCCCchhHHHHHHHHHHHHHHcCCceEEEEEec---------cCCCCHHHHHHHHHHcCCCeEEEe------
Q 025917 127 DGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHME---------LAEPSIKDAFGSCVQQGANRVIVS------ 191 (246)
Q Consensus 127 ~aLLLVgHGSr~pean~~l~~lA~~L~~r~~~~~V~vAFLE---------~~~PsL~eaLe~L~~qG~~rVvVV------ 191 (246)
+-+.|++ |-.....-+.+.++.+.+++..|. ++++.+. ...-+.++.+++|.+.|.+++.-.
T Consensus 116 ~ei~iv~-G~~p~~~~e~~~e~i~~Ik~~~p~--i~i~a~s~~Ei~~~~~~~~~~~~e~l~~LkeAGl~~~~g~GaEi~~ 192 (370)
T PRK05926 116 TETHIVA-GCFPSCNLAYYEELFSKIKQNFPD--LHIKALTAIEYAYLSKLDNLPVKEVLQTLKIAGLDSIPGGGAEILV 192 (370)
T ss_pred CEEEEEe-CcCCCCCHHHHHHHHHHHHHhCCC--eeEEECCHHHHHHHHhhcCCCHHHHHHHHHHcCcCccCCCCchhcC
Confidence 4566775 544222335677888889888775 4444331 123467899999999998876643
Q ss_pred ---eecccCcccccccHHHHHHHHHHh
Q 025917 192 ---PFFLFPGRHWCQDIPSLTAEAAKE 215 (246)
Q Consensus 192 ---PlFL~~G~Hv~~DIp~~l~~~~~~ 215 (246)
.=+++|+.....+--+.++.+++.
T Consensus 193 e~~r~~~~p~~~t~~e~l~~i~~a~~~ 219 (370)
T PRK05926 193 DEIRETLAPGRLSSQGFLEIHKTAHSL 219 (370)
T ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHc
Confidence 334667666544444455555543
No 78
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=23.08 E-value=1.8e+02 Score=26.98 Aligned_cols=87 Identities=10% Similarity=0.140 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHcCCceEEEEEeccCC-----CCHHHHHHHHHHcCCCeEEEeeecccCcccccccHHHHHHHHHHhCCCc
Q 025917 145 LKQFVAMFREKTGYLIVEPAHMELAE-----PSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQDIPSLTAEAAKEHPGV 219 (246)
Q Consensus 145 l~~lA~~L~~r~~~~~V~vAFLE~~~-----PsL~eaLe~L~~qG~~rVvVVPlFL~~G~Hv~~DIp~~l~~~~~~~Pgv 219 (246)
.-++|++..+.... ++.|++.+. -..-+.+++.. +.+.+||-...|...-+|+.+.+.. ..+
T Consensus 32 pVelA~~Y~e~GAD---ElvFlDItAs~~gr~~~~~vv~r~A-----~~vfiPltVGGGI~s~eD~~~ll~a----GAD- 98 (256)
T COG0107 32 PVELAKRYNEEGAD---ELVFLDITASSEGRETMLDVVERVA-----EQVFIPLTVGGGIRSVEDARKLLRA----GAD- 98 (256)
T ss_pred hHHHHHHHHHcCCC---eEEEEecccccccchhHHHHHHHHH-----hhceeeeEecCCcCCHHHHHHHHHc----CCC-
Confidence 45677777776444 566776432 12334555443 3578899999998888888776642 223
Q ss_pred eEEEcCCCCCChHHHHHHHHHHhcCC
Q 025917 220 PYIVTAPLGLHEQLVVNNFVLSFARP 245 (246)
Q Consensus 220 ~I~va~PLG~~p~Lva~ll~~Ry~~~ 245 (246)
+|.+..+--.+|+++ .-+.+||..|
T Consensus 99 KVSINsaAv~~p~lI-~~~a~~FGsQ 123 (256)
T COG0107 99 KVSINSAAVKDPELI-TEAADRFGSQ 123 (256)
T ss_pred eeeeChhHhcChHHH-HHHHHHhCCc
Confidence 567777778899988 6789999887
No 79
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=22.73 E-value=2.7e+02 Score=23.49 Aligned_cols=61 Identities=21% Similarity=0.238 Sum_probs=32.8
Q ss_pred EEeCCCCCchhHHHHHHHHHHHHHHcCCceEEE-EEeccCCCCHHHHHHHHHHcCCCeEEEeee
Q 025917 131 IVDHGSRRRESNLMLKQFVAMFREKTGYLIVEP-AHMELAEPSIKDAFGSCVQQGANRVIVSPF 193 (246)
Q Consensus 131 LVgHGSr~pean~~l~~lA~~L~~r~~~~~V~v-AFLE~~~PsL~eaLe~L~~qG~~rVvVVPl 193 (246)
++.....++-+......+.+..++. +. .+.+ .+-+.....-.+.+++++++|++-|++.|.
T Consensus 3 vi~~~~~~~~~~~~~~g~~~~a~~~-g~-~~~~~~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~ 64 (257)
T PF13407_consen 3 VIVPSMDNPFWQQVIKGAKAAAKEL-GY-EVEIVFDAQNDPEEQIEQIEQAISQGVDGIIVSPV 64 (257)
T ss_dssp EEESSSSSHHHHHHHHHHHHHHHHH-TC-EEEEEEESTTTHHHHHHHHHHHHHTTESEEEEESS
T ss_pred EEeCCCCCHHHHHHHHHHHHHHHHc-CC-EEEEeCCCCCCHHHHHHHHHHHHHhcCCEEEecCC
Confidence 3444444554444455555555543 43 2334 333333333446667777888888887766
No 80
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=22.25 E-value=4.8e+02 Score=21.97 Aligned_cols=57 Identities=11% Similarity=0.016 Sum_probs=34.6
Q ss_pred CCCCchhHHHHHHHHHHHHHHcCCceEEEEEeccCCCCHHHHHHHHHHcCCCeEEEeee
Q 025917 135 GSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPF 193 (246)
Q Consensus 135 GSr~pean~~l~~lA~~L~~r~~~~~V~vAFLE~~~PsL~eaLe~L~~qG~~rVvVVPl 193 (246)
...++.+...+..+.+.+++. ++ .+.+.+.+.......+.++.+.+++++-|++.|.
T Consensus 8 ~~~~~~~~~~~~gi~~~~~~~-g~-~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 64 (269)
T cd06275 8 TSTNPFFAEVVRGVEQYCYRQ-GY-NLILCNTEGDPERQRSYLRMLAQKRVDGLLVMCS 64 (269)
T ss_pred CCCcchHHHHHHHHHHHHHHc-CC-EEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecC
Confidence 344566666667777777654 43 3445444422222446677787888888888775
No 81
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=21.93 E-value=4.1e+02 Score=22.48 Aligned_cols=57 Identities=12% Similarity=0.103 Sum_probs=25.6
Q ss_pred CCCchhHHHHHHHHHHHHHHcCCceEEEEEeccCCCCHHHHHHHHHHcCCCeEEEeee
Q 025917 136 SRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPF 193 (246)
Q Consensus 136 Sr~pean~~l~~lA~~L~~r~~~~~V~vAFLE~~~PsL~eaLe~L~~qG~~rVvVVPl 193 (246)
..++.+......+.+.+++..++ .+.++......-...+.++.+.+++++-+++.|.
T Consensus 9 ~~~~~~~~~~~gi~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 65 (272)
T cd06301 9 FDDNFLTLLRNAMKEHAKVLGGV-ELQFEDAKNDVATQLSQVENFIAQGVDAIIVVPV 65 (272)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCc-EEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 34555555555555555542232 2333322211111224455555666666666554
No 82
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=21.79 E-value=4.9e+02 Score=21.94 Aligned_cols=56 Identities=18% Similarity=0.236 Sum_probs=32.9
Q ss_pred CCCchhHHHHHHHHHHHHHHcCCceEEEEEeccCCCCHHHHHHHHHHcCCCeEEEeee
Q 025917 136 SRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPF 193 (246)
Q Consensus 136 Sr~pean~~l~~lA~~L~~r~~~~~V~vAFLE~~~PsL~eaLe~L~~qG~~rVvVVPl 193 (246)
..++.+...+..+.+.+++. ++ .+.+...+.......+.++.+..++++-|++.|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~-g~-~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 64 (264)
T cd06274 9 LENRSFARIAKRLEALARER-GY-QLLIACSDDDPETERETVETLIARQVDALIVAGS 64 (264)
T ss_pred ccCchHHHHHHHHHHHHHHC-CC-EEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 44566666666666666653 44 3444444322233456677777778887887764
No 83
>PF07203 DUF1412: Protein of unknown function (DUF1412); InterPro: IPR009853 This family consists of several Caenorhabditis elegans proteins of around 70-75 residues in length. The function of this family is unknown.
Probab=21.74 E-value=41 Score=23.84 Aligned_cols=15 Identities=47% Similarity=0.775 Sum_probs=12.7
Q ss_pred ccccccccccCCCCc
Q 025917 16 YSLSWAQFPCHPGPV 30 (246)
Q Consensus 16 ~~~~~~~~~~~~~~~ 30 (246)
-||.|||.|-|-.|.
T Consensus 32 tslGWaQVph~~SPm 46 (53)
T PF07203_consen 32 TSLGWAQVPHVYSPM 46 (53)
T ss_pred cccchhhCccccCcc
Confidence 589999999987775
No 84
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=21.55 E-value=5e+02 Score=21.95 Aligned_cols=55 Identities=5% Similarity=-0.043 Sum_probs=28.9
Q ss_pred CCCchhHHHHHHHHHHHHHHcCCceEEEEEeccCCCCHHHHHHHHHHcCCCeEEEee
Q 025917 136 SRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSP 192 (246)
Q Consensus 136 Sr~pean~~l~~lA~~L~~r~~~~~V~vAFLE~~~PsL~eaLe~L~~qG~~rVvVVP 192 (246)
..++.+...++.+.+.+++. ++ .+.+.+.+.......+.++.+.+.+++-|++.|
T Consensus 12 ~~~~~~~~~~~~i~~~~~~~-g~-~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~ 66 (268)
T cd06277 12 NSPAFYSEIYRAIEEEAKKY-GY-NLILKFVSDEDEEEFELPSFLEDGKVDGIILLG 66 (268)
T ss_pred ccCCcHHHHHHHHHHHHHHc-CC-EEEEEeCCCChHHHHHHHHHHHHCCCCEEEEeC
Confidence 44555666666666666543 43 344444442221222344455666777777766
No 85
>PRK10785 maltodextrin glucosidase; Provisional
Probab=21.12 E-value=1.9e+02 Score=29.41 Aligned_cols=29 Identities=21% Similarity=0.419 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHcCCCeEEEeeecccCccc
Q 025917 172 SIKDAFGSCVQQGANRVIVSPFFLFPGRH 200 (246)
Q Consensus 172 sL~eaLe~L~~qG~~rVvVVPlFL~~G~H 200 (246)
.|.+-|+.|.+.|++.|.+-|+|-.++.|
T Consensus 180 GI~~kLdYL~~LGv~~I~L~Pif~s~s~h 208 (598)
T PRK10785 180 GISEKLPYLKKLGVTALYLNPIFTAPSVH 208 (598)
T ss_pred HHHHHHHHHHHcCCCEEEeCCcccCCCCC
Confidence 46677788899999999999999998776
No 86
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=20.92 E-value=2.9e+02 Score=24.24 Aligned_cols=16 Identities=19% Similarity=0.320 Sum_probs=6.4
Q ss_pred HHHHHHcCCCeEEEee
Q 025917 177 FGSCVQQGANRVIVSP 192 (246)
Q Consensus 177 Le~L~~qG~~rVvVVP 192 (246)
++.+.+++++-|+|.|
T Consensus 49 i~~l~~~~vdgiIi~~ 64 (302)
T TIGR02637 49 VNSLIAQKVDAIAISA 64 (302)
T ss_pred HHHHHHcCCCEEEEeC
Confidence 3333344444444433
No 87
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=20.17 E-value=2.5e+02 Score=26.60 Aligned_cols=95 Identities=17% Similarity=0.125 Sum_probs=59.8
Q ss_pred cEEEEEeCCCCCchhHHHHHHHHHHHHHHcCCce-EEEEEeccCCCCHH-HHHHHHHHcCCCeEEEeee--------ccc
Q 025917 127 DGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLI-VEPAHMELAEPSIK-DAFGSCVQQGANRVIVSPF--------FLF 196 (246)
Q Consensus 127 ~aLLLVgHGSr~pean~~l~~lA~~L~~r~~~~~-V~vAFLE~~~PsL~-eaLe~L~~qG~~rVvVVPl--------FL~ 196 (246)
..-|.++-|+..--..+.++++.+.+++..+... +++ .+|...-++. +-++.|.+.|+++|-+=-= .+.
T Consensus 56 i~tiy~GGGTPs~l~~~~L~~ll~~i~~~f~~~~~~ei-t~E~~P~~i~~e~L~~l~~~GvnrislGvQS~~d~vL~~l~ 134 (380)
T PRK09057 56 LTSIFFGGGTPSLMQPETVAALLDAIARLWPVADDIEI-TLEANPTSVEAGRFRGYRAAGVNRVSLGVQALNDADLRFLG 134 (380)
T ss_pred cCeEEeCCCccccCCHHHHHHHHHHHHHhCCCCCCccE-EEEECcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcC
Confidence 4578999999875556678899999988766532 222 3443222333 7788888889999887421 122
Q ss_pred CcccccccHHHHHHHHHHhCCCceEEE
Q 025917 197 PGRHWCQDIPSLTAEAAKEHPGVPYIV 223 (246)
Q Consensus 197 ~G~Hv~~DIp~~l~~~~~~~Pgv~I~v 223 (246)
. .|..+++-+.++.+++.+..+.+.+
T Consensus 135 R-~~~~~~~~~ai~~~~~~~~~v~~dl 160 (380)
T PRK09057 135 R-LHSVAEALAAIDLAREIFPRVSFDL 160 (380)
T ss_pred C-CCCHHHHHHHHHHHHHhCccEEEEe
Confidence 2 2444566667776766666554433
No 88
>PRK13660 hypothetical protein; Provisional
Probab=20.01 E-value=2.5e+02 Score=24.56 Aligned_cols=9 Identities=0% Similarity=-0.038 Sum_probs=3.7
Q ss_pred HHHHHHHHc
Q 025917 175 DAFGSCVQQ 183 (246)
Q Consensus 175 eaLe~L~~q 183 (246)
+++-+|.++
T Consensus 60 Evvl~LK~~ 68 (182)
T PRK13660 60 EVVLELKEE 68 (182)
T ss_pred HHHHHHHhh
Confidence 334444443
Done!