Query 025917
Match_columns 246
No_of_seqs 137 out of 1170
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 20:34:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025917.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025917hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lyh_A Cobalamin (vitamin B12) 99.9 2.5E-27 8.5E-32 188.9 11.5 119 122-244 1-119 (126)
2 2xws_A Sirohydrochlorin cobalt 99.9 1.3E-25 4.6E-30 179.1 10.9 117 125-245 2-125 (133)
3 1tjn_A Sirohydrochlorin cobalt 99.9 2.3E-25 7.9E-30 185.0 11.0 117 125-245 23-146 (156)
4 2xwp_A Sirohydrochlorin cobalt 99.9 3.5E-22 1.2E-26 177.8 7.3 167 46-244 83-254 (264)
5 2xwp_A Sirohydrochlorin cobalt 99.8 1.3E-19 4.6E-24 161.1 15.0 114 125-242 1-127 (264)
6 2xvy_A Chelatase, putative; me 99.8 4.7E-19 1.6E-23 156.8 13.8 121 122-244 5-137 (269)
7 2xvy_A Chelatase, putative; me 99.7 1E-19 3.4E-24 161.1 0.2 141 86-244 119-263 (269)
8 2jh3_A Ribosomal protein S2-re 99.7 4.8E-18 1.6E-22 163.8 4.0 115 125-244 2-132 (474)
9 2jh3_A Ribosomal protein S2-re 99.7 3.9E-18 1.3E-22 164.5 2.2 177 45-245 72-264 (474)
10 2h1v_A Ferrochelatase; rossman 99.2 5.3E-11 1.8E-15 108.5 10.9 118 125-244 174-306 (310)
11 2h1v_A Ferrochelatase; rossman 98.9 3.3E-09 1.1E-13 96.6 9.3 105 133-243 51-162 (310)
12 1lbq_A Ferrochelatase; rossman 98.9 5.6E-09 1.9E-13 97.5 10.6 108 133-243 68-183 (362)
13 1lbq_A Ferrochelatase; rossman 98.6 6.2E-09 2.1E-13 97.2 0.2 167 52-244 142-324 (362)
14 3hcn_A Ferrochelatase, mitocho 98.1 5E-05 1.7E-09 70.8 13.7 116 125-243 190-322 (359)
15 3hcn_A Ferrochelatase, mitocho 97.8 0.0002 7E-09 66.7 12.1 107 135-243 65-178 (359)
16 3s99_A Basic membrane lipoprot 59.7 99 0.0034 27.8 11.6 88 128-226 28-118 (356)
17 3g1w_A Sugar ABC transporter; 43.6 64 0.0022 26.7 7.0 66 126-193 4-70 (305)
18 3mtq_A Putative phosphoenolpyr 34.9 1.5E+02 0.0052 23.8 7.8 72 124-201 19-92 (159)
19 3bed_A PTS system, IIA compone 28.3 89 0.003 24.2 5.1 24 126-153 5-28 (142)
20 3gdw_A Sigma-54 interaction do 26.9 1.3E+02 0.0043 23.6 5.8 28 125-155 3-30 (139)
21 3l6u_A ABC-type sugar transpor 26.7 2.3E+02 0.0078 22.9 7.7 64 128-193 10-73 (293)
22 1to0_A Hypothetical UPF0247 pr 25.5 2.5E+02 0.0086 22.9 7.6 39 196-234 78-118 (167)
23 2e7y_A TRNAse Z; tRNA maturati 25.3 1.6E+02 0.0054 24.1 6.5 52 171-226 223-274 (280)
24 3l49_A ABC sugar (ribose) tran 25.3 2.7E+02 0.0092 22.5 7.9 64 128-193 7-70 (291)
25 3dmp_A Uracil phosphoribosyltr 25.2 70 0.0024 27.2 4.3 44 172-224 144-189 (217)
26 3uug_A Multiple sugar-binding 25.0 2.3E+02 0.0079 23.4 7.6 65 127-193 4-68 (330)
27 3h75_A Periplasmic sugar-bindi 24.6 2.7E+02 0.0094 23.4 8.1 64 127-192 4-70 (350)
28 2ehj_A Uracil phosphoribosyltr 22.9 1.6E+02 0.0055 24.7 6.0 42 172-222 138-179 (208)
29 3m9w_A D-xylose-binding peripl 22.9 2.8E+02 0.0096 22.8 7.7 63 129-193 5-67 (313)
30 3lfh_A Manxa, phosphotransfera 22.8 1.3E+02 0.0043 23.7 5.1 24 126-153 3-26 (144)
31 4aie_A Glucan 1,6-alpha-glucos 22.6 86 0.0029 28.8 4.6 48 173-222 34-97 (549)
32 1xg8_A Hypothetical protein SA 22.5 47 0.0016 25.9 2.3 64 139-202 26-91 (111)
33 3tb6_A Arabinose metabolism tr 22.2 3E+02 0.01 22.1 7.6 65 128-194 17-81 (298)
34 2ekc_A AQ_1548, tryptophan syn 21.9 3.6E+02 0.012 22.8 9.4 33 161-193 18-54 (262)
35 2y7p_A LYSR-type regulatory pr 21.2 89 0.0031 24.4 3.9 22 204-225 22-43 (218)
36 3jy6_A Transcriptional regulat 20.9 3.2E+02 0.011 22.0 7.5 65 128-194 9-73 (276)
37 2cw6_A Hydroxymethylglutaryl-C 20.8 2.2E+02 0.0074 24.6 6.7 44 173-219 158-201 (298)
38 3cf4_G Acetyl-COA decarboxylas 20.4 95 0.0032 24.6 3.9 27 126-152 35-61 (170)
39 3k9c_A Transcriptional regulat 20.4 2.2E+02 0.0075 23.3 6.4 62 127-194 15-76 (289)
40 3o1i_D Periplasmic protein TOR 20.2 3.4E+02 0.012 21.9 7.6 64 128-194 7-73 (304)
No 1
>3lyh_A Cobalamin (vitamin B12) biosynthesis CBIX protein; structural genomics, joint center for structural genomics, protein structure initiative; HET: MSE; 1.60A {Marinobacter aquaeolei}
Probab=99.94 E-value=2.5e-27 Score=188.94 Aligned_cols=119 Identities=27% Similarity=0.396 Sum_probs=109.5
Q ss_pred CCCCCcEEEEEeCCCCCchhHHHHHHHHHHHHHHcCCceEEEEEeccCCCCHHHHHHHHHHcCCCeEEEeeecccCcccc
Q 025917 122 GVGDKDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHW 201 (246)
Q Consensus 122 ~~~~~~aLLLVgHGSr~pean~~l~~lA~~L~~r~~~~~V~vAFLE~~~PsL~eaLe~L~~qG~~rVvVVPlFL~~G~Hv 201 (246)
|+..+++||||+|||++++++..++.++++++++. ..|++||+|.+.|++++++++|.++|+++|+|+||||++|.|+
T Consensus 1 ~m~~~~alllv~HGS~~~~~~~~~~~l~~~l~~~~--~~V~~a~le~~~P~l~~~l~~l~~~G~~~vvvvPlfl~~G~H~ 78 (126)
T 3lyh_A 1 GMTQPHQIILLAHGSSDARWCETFEKLAEPTVESI--ENAAIAYMELAEPSLDTIVNRAKGQGVEQFTVVPLFLAAGRHL 78 (126)
T ss_dssp ----CEEEEEEECCCSCHHHHHHHHHHHHHHHHHS--TTCEEEESSSSSSBHHHHHHHHHHTTCCEEEEEECCSCCCHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHhhc--CCEEEEEEeCCCCCHHHHHHHHHHcCCCEEEEEecccCCCchh
Confidence 35567899999999999999999999999999987 5799999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHhCCCceEEEcCCCCCChHHHHHHHHHHhcC
Q 025917 202 CQDIPSLTAEAAKEHPGVPYIVTAPLGLHEQLVVNNFVLSFAR 244 (246)
Q Consensus 202 ~~DIp~~l~~~~~~~Pgv~I~va~PLG~~p~Lva~ll~~Ry~~ 244 (246)
++|||+.++.+++++ ++++++++|||.||.++ +++.+|+.+
T Consensus 79 ~~Dip~~~~~~~~~~-~~~i~~~~~LG~~p~l~-~~l~~ri~~ 119 (126)
T 3lyh_A 79 RKDVPAMIERLEAEH-GVTIRLAEPIGKNPRLG-LAIRDVVKE 119 (126)
T ss_dssp HHHHHHHHHHHHHHH-TCEEEECCCGGGSHHHH-HHHHHHHHH
T ss_pred hhHHHHHHHHHHHHh-CceEEEcCCCCCChHHH-HHHHHHHHH
Confidence 999999999999888 88999999999999986 999999875
No 2
>2xws_A Sirohydrochlorin cobaltochelatase; lyase, beta-alpha-beta, cobalamin biosynthesis, metal-bindin parallel beta sheet; 1.60A {Archaeoglobus fulgidus} PDB: 2dj5_A* 2xwq_A
Probab=99.93 E-value=1.3e-25 Score=179.12 Aligned_cols=117 Identities=21% Similarity=0.303 Sum_probs=108.9
Q ss_pred CCcEEEEEeCCCCCchhHHHHHHHHHHHHHHcCCceEEEEEecc-CCCCHHHHHHHHHHcCCCeEEEeeecccCcccccc
Q 025917 125 DKDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMEL-AEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQ 203 (246)
Q Consensus 125 ~~~aLLLVgHGSr~pean~~l~~lA~~L~~r~~~~~V~vAFLE~-~~PsL~eaLe~L~~qG~~rVvVVPlFL~~G~Hv~~ 203 (246)
++++||||+|||++++++..++.++++++++.++..|++||+|. +.|++++++++| |+++|+|+||||++|.|+++
T Consensus 2 m~~alllv~HGS~~~~~~~~~~~la~~l~~~~~~~~V~~a~le~~~~Psl~~~l~~l---g~~~v~v~Plfl~~G~h~~~ 78 (133)
T 2xws_A 2 MRRGLVIVGHGSQLNHYREVMELHRKRIEESGAFDEVKIAFAARKRRPMPDEAIREM---NCDIIYVVPLFISYGLHVTE 78 (133)
T ss_dssp CCEEEEEEECSCCCHHHHHHHHHHHHHHHHHTSSSEEEEEESSTTCSSCHHHHHHHC---CCSEEEEEECCSSCCHHHHT
T ss_pred CcceEEEEECCCCCHHHHHHHHHHHHHHHhhCCCCcEEeeeeecCCCCCHHHHHHHc---CCCEEEEEeeeeCCCcchHh
Confidence 45899999999999999999999999999999888999999998 899999999998 99999999999999999999
Q ss_pred cHHHHHHHHHH------hCCCceEEEcCCCCCChHHHHHHHHHHhcCC
Q 025917 204 DIPSLTAEAAK------EHPGVPYIVTAPLGLHEQLVVNNFVLSFARP 245 (246)
Q Consensus 204 DIp~~l~~~~~------~~Pgv~I~va~PLG~~p~Lva~ll~~Ry~~~ 245 (246)
|||+.++..++ +++++++++++|||.+|.++ +++.+|+.+-
T Consensus 79 di~~~~~~~~~~~s~~~~~~~~~i~~~~pLg~~p~~~-~~l~~ri~~a 125 (133)
T 2xws_A 79 DLPDLLGFPRGRGIKEGEFEGKKVVICEPIGEDYFVT-YAILNSVFRI 125 (133)
T ss_dssp HHHHHHTCCCSSSCEEEEETTEEEEECCCSTTSHHHH-HHHHHHHHCC
T ss_pred HHHHHHHHhhccccccccCCCceEEEcCCCCCCHHHH-HHHHHHHHHh
Confidence 99999887655 68899999999999999986 9999998764
No 3
>1tjn_A Sirohydrochlorin cobaltochelatase; AF0721, APC5049, midwest consortium for structural genomics, structure initiative, A. fulgidus; 2.01A {Archaeoglobus fulgidus} SCOP: c.92.1.3
Probab=99.92 E-value=2.3e-25 Score=184.98 Aligned_cols=117 Identities=21% Similarity=0.303 Sum_probs=109.3
Q ss_pred CCcEEEEEeCCCCCchhHHHHHHHHHHHHHHcCCceEEEEEecc-CCCCHHHHHHHHHHcCCCeEEEeeecccCcccccc
Q 025917 125 DKDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMEL-AEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQ 203 (246)
Q Consensus 125 ~~~aLLLVgHGSr~pean~~l~~lA~~L~~r~~~~~V~vAFLE~-~~PsL~eaLe~L~~qG~~rVvVVPlFL~~G~Hv~~ 203 (246)
++++||||+|||++++++..+++++++|+++.++..|++||+|. ++|++++++++| |+++|+|+||||++|.|+++
T Consensus 23 M~~avlLv~HGS~~p~~~~~~~~la~~l~~~~~~~~V~~afle~~~~Psl~~~l~~l---G~~~VvVvPlfL~~G~h~~~ 99 (156)
T 1tjn_A 23 MRRGLVIVGHGSQLNHYREVMELHRKRIEESGAFDEVKIAFAARKRRPMPDEAIREM---NCDIIYVVPLFISYGLHVTE 99 (156)
T ss_dssp CCEEEEEEECCTTSTTHHHHHHHHHHHHHHHTSSSEEEEEECSSSCSSCHHHHHHHC---CCSEEEEEECCSSCSHHHHT
T ss_pred CCcCEEEEECCCCCHHHHHHHHHHHHHHHhhCCCCeEEEEEecCCCCCCHHHHHHHc---CCCEEEEEechhcCCchhHh
Confidence 55899999999999999999999999999999888999999998 999999999998 99999999999999999999
Q ss_pred cHHHHHHHHHH------hCCCceEEEcCCCCCChHHHHHHHHHHhcCC
Q 025917 204 DIPSLTAEAAK------EHPGVPYIVTAPLGLHEQLVVNNFVLSFARP 245 (246)
Q Consensus 204 DIp~~l~~~~~------~~Pgv~I~va~PLG~~p~Lva~ll~~Ry~~~ 245 (246)
|||+.++..++ ++|+++|++++|||.+|.++ +++.+|+.+-
T Consensus 100 DIp~~l~~~~~~~sw~~~~~~~~i~~~~pLG~~p~l~-~~l~~ri~ea 146 (156)
T 1tjn_A 100 DLPDLLGFPRGRGIKEGEFEGKKVVICEPIGEDYFVT-YAILNSVFRI 146 (156)
T ss_dssp HHHHHHTCCCSSSCEEEEETTEEEEECCCSTTCHHHH-HHHHHHHHCC
T ss_pred HHHHHHHHHHhcccccccCCCceEEEeCCCCCCHHHH-HHHHHHHHHH
Confidence 99999887655 68899999999999999986 9999998763
No 4
>2xwp_A Sirohydrochlorin cobaltochelatase; lyase, beta-alpha-beta, cobalamin biosynthesis, metal-bindin parallel beta sheet; HET: SIR; 1.90A {Salmonella enterica} PDB: 1qgo_A*
Probab=99.86 E-value=3.5e-22 Score=177.78 Aligned_cols=167 Identities=13% Similarity=0.130 Sum_probs=128.2
Q ss_pred HHhhcccCCCCCccchHHhhccChhhhcCCCceeeeeeccCccCCCCCCCCCCCCccccCCCCcccccccccCCCCCCCC
Q 025917 46 KITSSLHKPSETPNSWKADQNMSVESLALSPQFTVKRCSIGEVGTKNPIWVHPNSLNFQRGPSRTKHLSIKSSSRDGVGD 125 (246)
Q Consensus 46 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 125 (246)
.|+.+.|.. |+|..++..+...| .+++. .|+|+ ||. ..+.+. .++..++. ...+
T Consensus 83 ~l~~G~~~~-di~~~v~~~~~~~~-------~i~~~----~pl~~-~~~-----~~~~l~-~~l~~~~~-------~~~~ 136 (264)
T 2xwp_A 83 HIINGDEYE-KIVREVQLLRPLFT-------RLTLG----VPLLS-SHN-----DYVQLM-QALRQQMP-------SLRQ 136 (264)
T ss_dssp CSSSSHHHH-HHHHHHHHHGGGCS-------EEEEE----CCSSC-SHH-----HHHHHH-HHHHTTSC-------CCCT
T ss_pred cccCcHHHH-HHHHHHHHHHhhCC-------ceEEe----cCCCC-CHH-----HHHHHH-HHHHHhcc-------ccCC
Confidence 347888887 99999988875544 44433 58999 764 221111 11222221 1246
Q ss_pred CcEEEEEeCCCCCchhHHHHHHHHHHHHHHcCCceEEEEEeccCCCCHHHHHHHHHHcCCCeEEEeeecccCcccccccH
Q 025917 126 KDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQDI 205 (246)
Q Consensus 126 ~~aLLLVgHGSr~pean~~l~~lA~~L~~r~~~~~V~vAFLE~~~PsL~eaLe~L~~qG~~rVvVVPlFL~~G~Hv~~DI 205 (246)
+++|||++|||+++ +|..+..++..++++. + .|++||+|. .|++++++++|.++|+++|+|+||||+.|.|+++||
T Consensus 137 ~~~lvl~gHGs~~~-~~~~~~~~a~~l~~~~-~-~v~~g~~e~-~P~~~~~l~~l~~~G~~~v~v~P~~l~aG~h~~~Di 212 (264)
T 2xwp_A 137 TEKVVFMGHGASHH-AFAAYACLDHMMTAQR-F-PARVGAVES-YPEVDILIDSLRDEGVTGVHLMPLMLVAGDHAINDM 212 (264)
T ss_dssp TEEEEEEECCCSSG-GGHHHHHHHHHHHHTT-C-SEEEEESSS-SSCHHHHHHHHHHHTCCEEEEEECSSCCCHHHHHHH
T ss_pred CCeEEEEECCCCch-hhHHHHHHHHHHHhhC-C-CEEEEEeCC-CCCHHHHHHHHHHCCCCEEEEEeeecccCcchhhhc
Confidence 78999999999998 8999999999999874 4 899999995 999999999999999999999999999999999999
Q ss_pred HHH-----HHHHHHhCCCceEEEcCCCCCChHHHHHHHHHHhcC
Q 025917 206 PSL-----TAEAAKEHPGVPYIVTAPLGLHEQLVVNNFVLSFAR 244 (246)
Q Consensus 206 p~~-----l~~~~~~~Pgv~I~va~PLG~~p~Lva~ll~~Ry~~ 244 (246)
+.. ...+.+.+.++.+ +.+|||.||.++ +++.+|+.+
T Consensus 213 ~~~~~d~~~~~~~~~g~~~~~-~~~~LG~~p~i~-~~~~~r~~e 254 (264)
T 2xwp_A 213 ASDDGDSWKMRFNAAGIPATP-WLSGLGENPAIR-AMFVAHLHQ 254 (264)
T ss_dssp HSSSTTSHHHHHHHTTCCEEE-CCCCGGGCHHHH-HHHHHHHHH
T ss_pred cccchhHHHHHHHHcCCeEEE-eccCCCCCHHHH-HHHHHHHHH
Confidence 975 3444444444433 579999999986 999999865
No 5
>2xwp_A Sirohydrochlorin cobaltochelatase; lyase, beta-alpha-beta, cobalamin biosynthesis, metal-bindin parallel beta sheet; HET: SIR; 1.90A {Salmonella enterica} PDB: 1qgo_A*
Probab=99.82 E-value=1.3e-19 Score=161.09 Aligned_cols=114 Identities=11% Similarity=0.065 Sum_probs=101.6
Q ss_pred CCcEEEEEeCCCCCchhHH-HHHHHHHHHHHHcCCceEEEEEec------------cCCCCHHHHHHHHHHcCCCeEEEe
Q 025917 125 DKDGVIIVDHGSRRRESNL-MLKQFVAMFREKTGYLIVEPAHME------------LAEPSIKDAFGSCVQQGANRVIVS 191 (246)
Q Consensus 125 ~~~aLLLVgHGSr~pean~-~l~~lA~~L~~r~~~~~V~vAFLE------------~~~PsL~eaLe~L~~qG~~rVvVV 191 (246)
++++||||+|||+++++++ .++.++++++++.+...|+.||+| ...|++++++++|.++|+++|+|+
T Consensus 1 M~~aillv~hGSr~~~~~~~~~~~~~~~v~~~~p~~~V~~af~s~~i~~~l~~~~g~~~psi~~aL~~l~~~G~~~vvV~ 80 (264)
T 2xwp_A 1 MKKALLVVSFGTSYHDTCEKNIVACERDLAASCPDRDLFRAFTSGMIIRKLRQRDGIDIDTPLQALQKLAAQGYQDVAIQ 80 (264)
T ss_dssp -CEEEEEEECCCSCHHHHHHHHHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHCCCCCCHHHHHHHHHHHTCCEEEEE
T ss_pred CCceEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCeEEeehhhHHHHHHHHHhcCCCCCCHHHHHHHHHhCCCCEEEEE
Confidence 3579999999999999999 999999999999999999999994 467999999999999999999999
Q ss_pred eecccCcccccccHHHHHHHHHHhCCCceEEEcCCCCCChHHHHHHHHHHh
Q 025917 192 PFFLFPGRHWCQDIPSLTAEAAKEHPGVPYIVTAPLGLHEQLVVNNFVLSF 242 (246)
Q Consensus 192 PlFL~~G~Hv~~DIp~~l~~~~~~~Pgv~I~va~PLG~~p~Lva~ll~~Ry 242 (246)
|+|+++|.|+. |||+.++.++..|| +|+++.|||.+|..+ +.+.++.
T Consensus 81 Pl~l~~G~~~~-di~~~v~~~~~~~~--~i~~~~pl~~~~~~~-~~l~~~l 127 (264)
T 2xwp_A 81 SLHIINGDEYE-KIVREVQLLRPLFT--RLTLGVPLLSSHNDY-VQLMQAL 127 (264)
T ss_dssp ECCSSSSHHHH-HHHHHHHHHGGGCS--EEEEECCSSCSHHHH-HHHHHHH
T ss_pred eCcccCcHHHH-HHHHHHHHHHhhCC--ceEEecCCCCCHHHH-HHHHHHH
Confidence 99999999995 99999999998888 568899999999654 4444443
No 6
>2xvy_A Chelatase, putative; metal binding protein; HET: HEM; 1.70A {Desulfovibrio vulgaris} PDB: 2xvx_A* 2xvz_A*
Probab=99.80 E-value=4.7e-19 Score=156.79 Aligned_cols=121 Identities=17% Similarity=0.188 Sum_probs=103.9
Q ss_pred CCCCCcEEEEEeCCCCCchhHHHHHHHHHHHHHHcCCceEEEEEec-----------cCCCCHHHHHHHHHHcCCCeEEE
Q 025917 122 GVGDKDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHME-----------LAEPSIKDAFGSCVQQGANRVIV 190 (246)
Q Consensus 122 ~~~~~~aLLLVgHGSr~pean~~l~~lA~~L~~r~~~~~V~vAFLE-----------~~~PsL~eaLe~L~~qG~~rVvV 190 (246)
.+.++++||||+|||+++++++.++.++++++++.+..+|+.||++ ...|++++++++|.++|+++|+|
T Consensus 5 ~~~~~~aillv~hGS~~~~~~~~~~~~~~~l~~~~~~~~V~~af~~~~i~~~l~~~~~~~P~i~~al~~l~~~G~~~ivV 84 (269)
T 2xvy_A 5 PKAQKTGILLVAFGTSVEEARPALDKMGDRVRAAHPDIPVRWAYTAKMIRAKLRAEGIAAPSPAEALAGMAEEGFTHVAV 84 (269)
T ss_dssp ---CCEEEEEEECCCCCTTTTHHHHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCCEEEE
T ss_pred CCCCCceEEEEeCCCCcHHHHHHHHHHHHHHHHHCCCCeEEeehhhHHHHHHHHHcCCCCCCHHHHHHHHHHCCCCEEEE
Confidence 4556789999999999999999999999999999998999999999 88999999999999999999999
Q ss_pred eeecccCcccccccHHHHHHHHHHhCC-CceEEEcCCCCCChHHHHHHHHHHhcC
Q 025917 191 SPFFLFPGRHWCQDIPSLTAEAAKEHP-GVPYIVTAPLGLHEQLVVNNFVLSFAR 244 (246)
Q Consensus 191 VPlFL~~G~Hv~~DIp~~l~~~~~~~P-gv~I~va~PLG~~p~Lva~ll~~Ry~~ 244 (246)
+|+|+++|..+ +||++.++.+++... ..++++++|+|.||.++ +++.+|.++
T Consensus 85 ~Pl~l~~G~~~-~di~~~~~~l~~~~~~~~~i~~~~pl~~~p~~i-~~la~~i~~ 137 (269)
T 2xvy_A 85 QSLHTIPGEEF-HGLLETAHAFQGLPKGLTRVSVGLPLIGTTADA-EAVAEALVA 137 (269)
T ss_dssp EECCSSSSHHH-HHHHHHHHHHTTCTTSCSEEEEECCSSCSHHHH-HHHHHHHHH
T ss_pred EeceeeccHhH-HHHHHHHHHHHHhhccCCeEEEeCCCCCCHHHH-HHHHHHHHH
Confidence 99999999854 699998544433111 26789999999999987 888888753
No 7
>2xvy_A Chelatase, putative; metal binding protein; HET: HEM; 1.70A {Desulfovibrio vulgaris} PDB: 2xvx_A* 2xvz_A*
Probab=99.75 E-value=1e-19 Score=161.12 Aligned_cols=141 Identities=11% Similarity=0.111 Sum_probs=111.7
Q ss_pred CccCCCCCCCCCCCCccccCCCCcccccccccCCCCCCCCCcEEEEEeCCCCCchhHHHHHHHHHHHHHHcCCceEEEEE
Q 025917 86 GEVGTKNPIWVHPNSLNFQRGPSRTKHLSIKSSSRDGVGDKDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAH 165 (246)
Q Consensus 86 ~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~aLLLVgHGSr~pean~~l~~lA~~L~~r~~~~~V~vAF 165 (246)
.++|. ||. +. .+...++.++. ......+++||+++|||++ .++..+.++++.|+++ + ..+++|+
T Consensus 119 ~pl~~-~p~-----~i-----~~la~~i~~~~--~~~~~~~~~lll~~HGs~~-~~~~~~~~~a~~l~~~-~-~~~~~g~ 182 (269)
T 2xvy_A 119 LPLIG-TTA-----DA-----EAVAEALVASL--PADRKPGEPVVFMGHGTPH-PADICYPGLQYYLWRL-D-PDLLVGT 182 (269)
T ss_dssp CCSSC-SHH-----HH-----HHHHHHHHHHS--CTTCCTTCCEEEEECCCSS-GGGGHHHHHHHHHHTT-C-TTEEEEE
T ss_pred CCCCC-CHH-----HH-----HHHHHHHHHhc--hhhccCCceEEEEECCCCh-hhccHHHHHHHHHHhc-C-CCEEEEE
Confidence 47888 776 66 44445555442 2112356799999999998 7888899999999775 3 5688999
Q ss_pred eccCCCCHHHHHHHHHHcCCCeEEEeeecccCcccccccHHHHH-HHHHHhCC--CceEE-EcCCCCCChHHHHHHHHHH
Q 025917 166 MELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQDIPSLT-AEAAKEHP--GVPYI-VTAPLGLHEQLVVNNFVLS 241 (246)
Q Consensus 166 LE~~~PsL~eaLe~L~~qG~~rVvVVPlFL~~G~Hv~~DIp~~l-~~~~~~~P--gv~I~-va~PLG~~p~Lva~ll~~R 241 (246)
+|. .|++++++++|.++|+++|+|+||||++|.|+++||+..+ .++++.++ |.++. +.++||.+|.++ +++.+|
T Consensus 183 ~e~-~P~~~~~l~~l~~~G~~~v~v~P~~l~~G~h~~~di~~~~~~~~~~~~~~~g~~~~~~~~~Lg~~p~~~-~~l~~~ 260 (269)
T 2xvy_A 183 VEG-SPSFDNVMAELDVRKAKRVWLMPLMAVAGDHARNDMAGDEDDSWTSQLARRGIEAKPVLHGTAESDAVA-AIWLRH 260 (269)
T ss_dssp SSS-SSCHHHHHHHHHHHTCSEEEEEEESSSCCHHHHTTTTCSSTTSHHHHHHHTTCEEEECCCCGGGCHHHH-HHHHHH
T ss_pred cCC-CCCHHHHHHHHHHCCCCEEEEECCccccccchhhhcCCCchhHHHHHHHHcCcEEEEecCCCCCCHHHH-HHHHHH
Confidence 994 8999999999999999999999999999999999988653 33444444 66666 899999999986 999999
Q ss_pred hcC
Q 025917 242 FAR 244 (246)
Q Consensus 242 y~~ 244 (246)
+.+
T Consensus 261 ~~~ 263 (269)
T 2xvy_A 261 LDD 263 (269)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
No 8
>2jh3_A Ribosomal protein S2-related protein; CBIX, SAD phasing, structural genomics, chelatase super-family fold, 4Fe-4S iron-sulphur cluster; 1.9A {Deinococcus radiodurans}
Probab=99.69 E-value=4.8e-18 Score=163.80 Aligned_cols=115 Identities=21% Similarity=0.260 Sum_probs=103.8
Q ss_pred CCcEEEEEeCCC-CCchhHHHHHHHHHHHHHHcC-----CceEEEEEeccCCCCHHHHHHHHHHcCCCeEEEeeecccCc
Q 025917 125 DKDGVIIVDHGS-RRRESNLMLKQFVAMFREKTG-----YLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPG 198 (246)
Q Consensus 125 ~~~aLLLVgHGS-r~pean~~l~~lA~~L~~r~~-----~~~V~vAFLE~~~PsL~eaLe~L~~qG~~rVvVVPlFL~~G 198 (246)
++++||||+||| +++++++.++.++++++++.+ +..|++||+| ..|++++++++| |+++|+|+|+|++.|
T Consensus 2 mk~alLLVgHGSp~~~~a~~~i~~La~~l~~~~~~~~L~~~~V~~Afle-~~PsI~eaL~~L---G~~rVvVvPLfl~~G 77 (474)
T 2jh3_A 2 ALRSLVLIGHGSHHHGESARATQQVAEALRGRGLAGHLPYDEVLEGYWQ-QEPGLRQVLRTV---AYSDVTVVPVFLSEG 77 (474)
T ss_dssp CBCEEEEEECCCSSCTHHHHHHHHHHHHHHHHHHTTCCSCSEEEEEESS-SSSBTTTGGGGC---CBSEEEEEECCSCCS
T ss_pred CcceEEEEeCCCCCChhHHHHHHHHHHHHHHhCCccccCCCeEEEEEcC-CCCCHHHHHHHc---CcCeEEEEEEehhcc
Confidence 568999999999 589999999999999998876 7789999999 899999999998 999999999999999
Q ss_pred ccccccHHHHHHHHHH----------hCCCceEEEcCCCCCChHHHHHHHHHHhcC
Q 025917 199 RHWCQDIPSLTAEAAK----------EHPGVPYIVTAPLGLHEQLVVNNFVLSFAR 244 (246)
Q Consensus 199 ~Hv~~DIp~~l~~~~~----------~~Pgv~I~va~PLG~~p~Lva~ll~~Ry~~ 244 (246)
.|+++|||+.++..+. .+++++|.+++|||.||.++ +++.+|..+
T Consensus 78 ~H~~~DIp~~l~~~~~~~dsw~~~~~~~p~~~I~~~~pLG~~P~li-e~la~rI~e 132 (474)
T 2jh3_A 78 YVTETVLPRELGLGHQGPVPTGGVVRVLGGRRVRYTRPLGAHPGMA-DAIAAQARD 132 (474)
T ss_dssp HHHHTHHHHHHTCCCCSCCCTTCEEEEETTEEEEECCCGGGSTTHH-HHHHHHHHH
T ss_pred HhHHHHHHHHHHHhhhccccchhhhhhcCCceEEEeCccCCCHHHH-HHHHHHHHH
Confidence 9999999998876543 56788999999999999987 899998764
No 9
>2jh3_A Ribosomal protein S2-related protein; CBIX, SAD phasing, structural genomics, chelatase super-family fold, 4Fe-4S iron-sulphur cluster; 1.9A {Deinococcus radiodurans}
Probab=99.69 E-value=3.9e-18 Score=164.46 Aligned_cols=177 Identities=16% Similarity=0.219 Sum_probs=135.7
Q ss_pred HHHhhcccCCCCCccchHHhhcc--Ch-hhhcCCCceeeeeeccCccCCCCCCCCCCCCccccCCCCcccccccccCCCC
Q 025917 45 CKITSSLHKPSETPNSWKADQNM--SV-ESLALSPQFTVKRCSIGEVGTKNPIWVHPNSLNFQRGPSRTKHLSIKSSSRD 121 (246)
Q Consensus 45 ~~~~~~~~~~~~~p~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 121 (246)
..+..++|.+.|||..+..++.. |- ..+...+.+.++ +. .++|. ||. +. .+...|+.++ ...
T Consensus 72 Lfl~~G~H~~~DIp~~l~~~~~~~dsw~~~~~~~p~~~I~-~~-~pLG~-~P~-----li-----e~la~rI~ea--l~~ 136 (474)
T 2jh3_A 72 VFLSEGYVTETVLPRELGLGHQGPVPTGGVVRVLGGRRVR-YT-RPLGA-HPG-----MA-----DAIAAQARDT--LPE 136 (474)
T ss_dssp CCSCCSHHHHTHHHHHHTCCCCSCCCTTCEEEEETTEEEE-EC-CCGGG-STT-----HH-----HHHHHHHHHH--SCT
T ss_pred EehhccHhHHHHHHHHHHHhhhccccchhhhhhcCCceEE-Ee-CccCC-CHH-----HH-----HHHHHHHHHH--Hhh
Confidence 34688999999999987765420 00 000011134554 44 58999 887 77 4444555443 111
Q ss_pred CCC-CCcEEEEEeCCCCCchhHHHHHHHHHHHHHHcCCceEEEEEeccCCC-----------CHHHHHHHHHHcCCCeEE
Q 025917 122 GVG-DKDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEP-----------SIKDAFGSCVQQGANRVI 189 (246)
Q Consensus 122 ~~~-~~~aLLLVgHGSr~pean~~l~~lA~~L~~r~~~~~V~vAFLE~~~P-----------sL~eaLe~L~~qG~~rVv 189 (246)
+.. .+.+|||++ ++.++..+.++++.|+++.++..|++||+|. .| ++++++++| |+++|+
T Consensus 137 g~~~~~~avvlvg----dp~a~~~~~~la~~L~e~lg~~~v~vaf~s~-~Pwl~P~~~wleP~l~d~l~~L---G~krVv 208 (474)
T 2jh3_A 137 GTDPADVTLLLLA----ARPGNAALETHAQALRERGQFAGVEVVLESR-EALTPESHAASAVPLSEWPSRV---EAGQAV 208 (474)
T ss_dssp TCCGGGCEEEEEE----SSTTCHHHHHHHHHHHHHCCSSEEEEEECCC-C---------CCEEGGGGGGGC---CSSCEE
T ss_pred ccCcccceEEEec----CchHHHHHHHHHHHHHHhcCCCcEEEEEEeC-CCCCCcccccccCCHHHHHHHc---CCCeEE
Confidence 222 346899999 7888999999999999999888899999997 77 999999887 999999
Q ss_pred EeeecccCcccccccHHHHHHHHHHhCC-CceEEEcCCCCCChHHHHHHHHHHhcCC
Q 025917 190 VSPFFLFPGRHWCQDIPSLTAEAAKEHP-GVPYIVTAPLGLHEQLVVNNFVLSFARP 245 (246)
Q Consensus 190 VVPlFL~~G~Hv~~DIp~~l~~~~~~~P-gv~I~va~PLG~~p~Lva~ll~~Ry~~~ 245 (246)
|+||||++|.|+.+||+..++.....+| |+++.++++||.||.++ +++.+|+.+-
T Consensus 209 V~P~Fl~dG~h~~~DI~~~~~~~~~~~p~G~~v~~~~~LG~~p~~~-~ll~~rv~ea 264 (474)
T 2jh3_A 209 LVPFLTHLGKHAAERLQQALAQAAERFPQAPPLHVGGPVGEHPAVA-EVVLALAAEG 264 (474)
T ss_dssp EEECSSCCCHHHHHHHHHHHHHHHHHCTTCCCEEECCCGGGSTTHH-HHHHHHHHTT
T ss_pred EEEeeccCCcchHHHHHHHHHHHHHhccCCcEEEecCCCCCCHHHH-HHHHHHHHHH
Confidence 9999999999999999998877777788 89999999999999986 9999999763
No 10
>2h1v_A Ferrochelatase; rossman fold, PI-helix, lyase; 1.20A {Bacillus subtilis} PDB: 2hk6_A 1c1h_A* 1ld3_A 1n0i_A 1ak1_A 3goq_A 1doz_A 2q2n_A* 3m4z_A 2h1w_A 2ac2_A 2q3j_A* 2ac4_A 2q2o_A* 1c9e_A* 2c8j_A
Probab=99.21 E-value=5.3e-11 Score=108.51 Aligned_cols=118 Identities=12% Similarity=0.132 Sum_probs=98.7
Q ss_pred CCcEEEEEeCCCCCc------hhHHHHHHHHHHHHHHcCCceEEEEEecc-------CCCCHHHHHHHHHHc-CCCeEEE
Q 025917 125 DKDGVIIVDHGSRRR------ESNLMLKQFVAMFREKTGYLIVEPAHMEL-------AEPSIKDAFGSCVQQ-GANRVIV 190 (246)
Q Consensus 125 ~~~aLLLVgHGSr~p------ean~~l~~lA~~L~~r~~~~~V~vAFLE~-------~~PsL~eaLe~L~~q-G~~rVvV 190 (246)
++..||+.+||+... ..+..+++.++.+.++.+...+.+||.+. ..|++++++++|.++ |+++|+|
T Consensus 174 ~~~~llfs~HG~P~~~~~~gDpY~~~~~~t~~~l~e~l~~~~~~~~fqSrg~g~~~Wl~P~~~~~l~~l~~~~G~k~v~V 253 (310)
T 2h1v_A 174 ENAMLIVSAHSLPEKIKEFGDPYPDQLHESAKLIAEGAGVSEYAVGWQSEGNTPDPWLGPDVQDLTRDLFEQKGYQAFVY 253 (310)
T ss_dssp TSEEEEEEEECCBGGGGGGTCCHHHHHHHHHHHHHHHHTCSCEEEEEESCCCCSSCBSSCBHHHHHHHHHHHHCCSEEEE
T ss_pred CCceEEEecCCCchhhccCCCChHHHHHHHHHHHHHHcCCCCEEEEEEcCCCCCCCcCCCCHHHHHHHHHHHcCCceEEE
Confidence 467999999999743 36788999999999998887899999985 689999999999999 9999999
Q ss_pred eee-cccCcccccccHHHHHHHHHHhCCCceEEEcCCCCCChHHHHHHHHHHhcC
Q 025917 191 SPF-FLFPGRHWCQDIPSLTAEAAKEHPGVPYIVTAPLGLHEQLVVNNFVLSFAR 244 (246)
Q Consensus 191 VPl-FL~~G~Hv~~DIp~~l~~~~~~~Pgv~I~va~PLG~~p~Lva~ll~~Ry~~ 244 (246)
+|+ |++.+.++..||....++...+. |.++.+.+.||+||.++ +.|.++..+
T Consensus 254 ~P~~F~sD~lEtl~ei~~e~~e~~~~~-G~~~~~~p~ln~~p~~i-~~l~~~v~~ 306 (310)
T 2h1v_A 254 VPVGFVADHLEVLYDNDYECKVVTDDI-GASYYRPEMPNAKPEFI-DALATVVLK 306 (310)
T ss_dssp ECTTCCSSCHHHHTTTTTHHHHHHHHH-TCEEECCCCCTTCHHHH-HHHHHHHHH
T ss_pred ECCcccccceeeHHHHHHHHHHHHHHc-CCeEEECCCCCCCHHHH-HHHHHHHHH
Confidence 998 66666766778877666654443 68899999999999987 888888754
No 11
>2h1v_A Ferrochelatase; rossman fold, PI-helix, lyase; 1.20A {Bacillus subtilis} PDB: 2hk6_A 1c1h_A* 1ld3_A 1n0i_A 1ak1_A 3goq_A 1doz_A 2q2n_A* 3m4z_A 2h1w_A 2ac2_A 2q3j_A* 2ac4_A 2q2o_A* 1c9e_A* 2c8j_A
Probab=98.91 E-value=3.3e-09 Score=96.62 Aligned_cols=105 Identities=11% Similarity=0.048 Sum_probs=83.2
Q ss_pred eCCCCCchhHH-HHHHHHHHHHHHcC--CceEEEEEeccCCCCHHHHHHHHHHcCCCeEEEeeecc----cCcccccccH
Q 025917 133 DHGSRRRESNL-MLKQFVAMFREKTG--YLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFL----FPGRHWCQDI 205 (246)
Q Consensus 133 gHGSr~pean~-~l~~lA~~L~~r~~--~~~V~vAFLE~~~PsL~eaLe~L~~qG~~rVvVVPlFL----~~G~Hv~~DI 205 (246)
+|||+....+. ..+.+.+.|.++.+ ...|++|| +.+.|++++++++|.++|+++|+|+|+|. +...++.+||
T Consensus 51 g~gSPl~~~t~~q~~~L~~~L~~~~~~~~~~V~~am-ry~~P~i~~~l~~l~~~G~~~ivvlPl~pq~s~st~g~~~~~i 129 (310)
T 2h1v_A 51 GGISPLAQITEQQAHNLEQHLNEIQDEITFKAYIGL-AHIEPFIEDAVAEMHKDGITEAVSIVLAPHFSTFSVQSYNKRA 129 (310)
T ss_dssp TCSHHHHHHHHHHHHHHHHHHHHHCSSEEEEEEEEE-SSSSSBHHHHHHHHHHTTCCEEEEEESSSSCCTTTHHHHHHHH
T ss_pred CCCChhHHHHHHHHHHHHHHHHhcCCCCCceEeehh-cCCCCCHHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHH
Confidence 68887655554 36777778877653 46899995 88999999999999999999999999995 2223566788
Q ss_pred HHHHHHHHHhCCCceEEEcCCCCCChHHHHHHHHHHhc
Q 025917 206 PSLTAEAAKEHPGVPYIVTAPLGLHEQLVVNNFVLSFA 243 (246)
Q Consensus 206 p~~l~~~~~~~Pgv~I~va~PLG~~p~Lva~ll~~Ry~ 243 (246)
++.++.. ++.++++.++++.||.++ +.+.+|..
T Consensus 130 ~~~l~~~----~~~~i~~i~~~~~~p~~i-~a~a~~i~ 162 (310)
T 2h1v_A 130 KEEAEKL----GGLTITSVESWYDEPKFV-TYWVDRVK 162 (310)
T ss_dssp HHHHHHH----CSCEEEECCCCTTCHHHH-HHHHHHHH
T ss_pred HHHHHhC----CCCeEEEeCCCCCCHHHH-HHHHHHHH
Confidence 8877654 367889999999999997 78888764
No 12
>1lbq_A Ferrochelatase; rossmann fold, PI-helix, lyase; 2.40A {Saccharomyces cerevisiae} SCOP: c.92.1.1 PDB: 1l8x_A
Probab=98.90 E-value=5.6e-09 Score=97.51 Aligned_cols=108 Identities=10% Similarity=0.126 Sum_probs=86.6
Q ss_pred eCCCCCchhHH-HHHHHHHHHHHHc---CCceEEEEEeccCCCCHHHHHHHHHHcCCCeEEEeeeccc-Cc---cccccc
Q 025917 133 DHGSRRRESNL-MLKQFVAMFREKT---GYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLF-PG---RHWCQD 204 (246)
Q Consensus 133 gHGSr~pean~-~l~~lA~~L~~r~---~~~~V~vAFLE~~~PsL~eaLe~L~~qG~~rVvVVPlFL~-~G---~Hv~~D 204 (246)
++||+...... ..+.+.++|.+.. ....|++| ++.+.|++++++++|.++|+++|+++|++.. .+ .|+.+|
T Consensus 68 g~gSPL~~~t~~q~~~L~~~L~~~~~~~~~~~V~~a-mry~~P~i~d~l~~l~~~G~~~ivvlPlyPqyS~~ttgs~~~~ 146 (362)
T 1lbq_A 68 GGGSPIRKWSEYQATEVCKILDKTCPETAPHKPYVA-FRYAKPLTAETYKQMLKDGVKKAVAFSQYPHFSYSTTGSSINE 146 (362)
T ss_dssp TSSCSHHHHHHHHHHHHHHHHHHHCGGGCCEEEEEE-ESSSSSCHHHHHHHHHTTTCCEEEEEESCSSCCTTTHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHHhhcccCCCceEEee-cccCCCCHHHHHHHHHHcCCCeEEEEecchhccccchhHHHHH
Confidence 58888655444 3566777776543 24578999 5889999999999999999999999999973 33 388889
Q ss_pred HHHHHHHHHHhCCCceEEEcCCCCCChHHHHHHHHHHhc
Q 025917 205 IPSLTAEAAKEHPGVPYIVTAPLGLHEQLVVNNFVLSFA 243 (246)
Q Consensus 205 Ip~~l~~~~~~~Pgv~I~va~PLG~~p~Lva~ll~~Ry~ 243 (246)
|++.++.. ..+|+++|++.++++.||.++ +.+.+|..
T Consensus 147 i~~~l~~~-~~~~~i~i~~i~~~~~~p~~I-~ala~~I~ 183 (362)
T 1lbq_A 147 LWRQIKAL-DSERSISWSVIDRWPTNEGLI-KAFSENIT 183 (362)
T ss_dssp HHHHHHHH-CTTCCSEEEEECCCTTCHHHH-HHHHHHHH
T ss_pred HHHHHHhc-ccCCCceEEEecCCCCCHHHH-HHHHHHHH
Confidence 99988877 356889999999999999998 78887764
No 13
>1lbq_A Ferrochelatase; rossmann fold, PI-helix, lyase; 2.40A {Saccharomyces cerevisiae} SCOP: c.92.1.1 PDB: 1l8x_A
Probab=98.58 E-value=6.2e-09 Score=97.20 Aligned_cols=167 Identities=10% Similarity=0.009 Sum_probs=109.0
Q ss_pred cCCCCCccchHHhhccChhhhcCCCceeeeeeccCccCCCCCCCCCCCCccccCCCCcccccccccC-CCCCCCCCcEEE
Q 025917 52 HKPSETPNSWKADQNMSVESLALSPQFTVKRCSIGEVGTKNPIWVHPNSLNFQRGPSRTKHLSIKSS-SRDGVGDKDGVI 130 (246)
Q Consensus 52 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~aLL 130 (246)
|+.-|+++.++..+ ..| .++++ +- ...+- ||. +. .+...++.++-. ......++..||
T Consensus 142 s~~~~i~~~l~~~~-~~~-------~i~i~-~i-~~~~~-~p~-----~I-----~ala~~I~~~l~~~~~~~~~~~~ll 200 (362)
T 1lbq_A 142 SSINELWRQIKALD-SER-------SISWS-VI-DRWPT-NEG-----LI-----KAFSENITKKLQEFPQPVRDKVVLL 200 (362)
T ss_dssp HHHHHHHHHHHHHC-TTC-------CSEEE-EE-CCCTT-CHH-----HH-----HHHHHHHHHHHHTSCSTTGGGCEEE
T ss_pred HHHHHHHHHHHhcc-cCC-------CceEE-Ee-cCCCC-CHH-----HH-----HHHHHHHHHHHHhcCcccCCCeEEE
Confidence 66677777766552 223 55544 22 36777 776 76 444444432210 111112346899
Q ss_pred EEeCCCCC------chhHHHHHHHHHHHHHHcCCc-eEEEEEeccC------CCCHHHHHHHHHHcCCCeEEEeeecccC
Q 025917 131 IVDHGSRR------RESNLMLKQFVAMFREKTGYL-IVEPAHMELA------EPSIKDAFGSCVQQGANRVIVSPFFLFP 197 (246)
Q Consensus 131 LVgHGSr~------pean~~l~~lA~~L~~r~~~~-~V~vAFLE~~------~PsL~eaLe~L~~qG~~rVvVVPlFL~~ 197 (246)
+.+||... ...+....+.++.+.++.+.. .+.++|-+.. .|++++.+++| ++|+++|+|+|+. |-
T Consensus 201 fSaHglP~~~~~~GDpY~~q~~~ta~ll~e~lg~~~~~~~~fQSr~G~~~WL~P~t~~~l~~L-~~G~k~vvVvP~g-Fv 278 (362)
T 1lbq_A 201 FSAHSLPMDVVNTGDAYPAEVAATVYNIMQKLKFKNPYRLVWQSQVGPKPWLGAQTAEIAEFL-GPKVDGLMFIPIA-FT 278 (362)
T ss_dssp EEEECCBHHHHTTTCSHHHHHHHHHHHHHHHTTTCSCEEEEEECCCSSSCBCSCBHHHHHHHH-GGGCSCEEEECTT-CS
T ss_pred EecCCCccccccCCCcHHHHHHHHHHHHHHHcCCCCCEEEEEECCCCCcccCCCCHHHHHHHH-HcCCCeEEEECCe-ec
Confidence 99999532 225678899999999998865 5899999854 69999999999 9999999999984 55
Q ss_pred cccccccHHHHHHHHHH--hCCCceEEEcCCCCCChHHHHHHHHHHhcC
Q 025917 198 GRHWCQDIPSLTAEAAK--EHPGVPYIVTAPLGLHEQLVVNNFVLSFAR 244 (246)
Q Consensus 198 G~Hv~~DIp~~l~~~~~--~~Pgv~I~va~PLG~~p~Lva~ll~~Ry~~ 244 (246)
+.|+. .+.++-.+.++ ...|. +.+.+.||+||..+ +.|.++..+
T Consensus 279 sD~lE-TL~eid~e~~e~~~~~G~-~~~~p~Ln~~p~fi-~~L~~lv~~ 324 (362)
T 1lbq_A 279 SDHIE-TLHEIDLGVIGESEYKDK-FKRCESLNGNQTFI-EGMADLVKS 324 (362)
T ss_dssp SCCHH-HHTCCCCCCCTTCTTGGG-EEECCCCTTCHHHH-HHHHHHHHH
T ss_pred hhhHh-hHHHHHHHHHHHHHhCCC-EEEcCCCCCCHHHH-HHHHHHHHH
Confidence 55652 22211001111 23455 89999999999987 788877653
No 14
>3hcn_A Ferrochelatase, mitochondrial; metal selectivity, disease mutation, heme biosynthesis, iron, iron-sulfur, lyase, membrane, metal-BIN mitochondrion; HET: CHD HEM GOL; 1.60A {Homo sapiens} SCOP: c.92.1.1 PDB: 2qd3_A* 2qd5_A* 2qd4_A* 3hco_A* 3hcr_A* 2qd1_A* 2hre_A* 3hcp_A* 2qd2_A* 2hrc_A* 1hrk_A* 4f4d_A* 3aqi_A* 2pnj_A* 2po5_A* 2po7_A*
Probab=98.07 E-value=5e-05 Score=70.85 Aligned_cols=116 Identities=11% Similarity=0.087 Sum_probs=83.0
Q ss_pred CCcEEEEEeCCCCC------chhHHHHHHHHHHHHHHcCCc-eEEEEEecc-C-----CCCHHHHHHHHHHcCCCeEEEe
Q 025917 125 DKDGVIIVDHGSRR------RESNLMLKQFVAMFREKTGYL-IVEPAHMEL-A-----EPSIKDAFGSCVQQGANRVIVS 191 (246)
Q Consensus 125 ~~~aLLLVgHGSr~------pean~~l~~lA~~L~~r~~~~-~V~vAFLE~-~-----~PsL~eaLe~L~~qG~~rVvVV 191 (246)
++..||+.+||-.. .......++.++.+.++.+.. .+.++|-+. + .|++++.+++|.++|+++|+|+
T Consensus 190 ~~~~LlfSaHgiP~~~~~~GDpY~~q~~~t~~lv~e~Lg~~~~~~l~~QSr~G~~~WL~P~t~d~l~~L~~~G~k~vvv~ 269 (359)
T 3hcn_A 190 SEVVILFSAHSLPMSVVNRGDPYPQEVSATVQKVMERLEYCNPYRLVWQSKVGPMPWLGPQTDESIKGLCERGRKNILLV 269 (359)
T ss_dssp GGCEEEEEEECCBHHHHTTTCSHHHHHHHHHHHHHHHTTTCSCEEEEEECCSCSSCBSSSBHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEEcCCChHhhcccCCCHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCeEEEE
Confidence 44689999999842 225567888888888887764 478999752 2 5999999999999999999999
Q ss_pred eecccCcccc--cccHHHHH-HHHHHhCCCc-eEEEcCCCCCChHHHHHHHHHHhc
Q 025917 192 PFFLFPGRHW--CQDIPSLT-AEAAKEHPGV-PYIVTAPLGLHEQLVVNNFVLSFA 243 (246)
Q Consensus 192 PlFL~~G~Hv--~~DIp~~l-~~~~~~~Pgv-~I~va~PLG~~p~Lva~ll~~Ry~ 243 (246)
|..++ ..|+ ..||-... ++... ..|. ++.+.+.|++||..+ +.|.+...
T Consensus 270 P~gFv-sD~lETL~Eid~E~~~e~a~-e~G~~~~~rip~LNd~p~fi-~~La~lv~ 322 (359)
T 3hcn_A 270 PIAFT-SDHIETLYELDIEYSQVLAK-ECGVENIRRAESLNGNPLFS-KALADLVH 322 (359)
T ss_dssp CTTCC-SCCCCCHHHHCHHHHHHHHH-HTCCCEEEECCCSTTCHHHH-HHHHHHHH
T ss_pred CCccc-hhhHHhHHHHHHHHHHHHHH-hCCCceEEEcCCCCCCHHHH-HHHHHHHH
Confidence 97533 3555 34443333 12222 3466 699999999999987 66665543
No 15
>3hcn_A Ferrochelatase, mitochondrial; metal selectivity, disease mutation, heme biosynthesis, iron, iron-sulfur, lyase, membrane, metal-BIN mitochondrion; HET: CHD HEM GOL; 1.60A {Homo sapiens} SCOP: c.92.1.1 PDB: 2qd3_A* 2qd5_A* 2qd4_A* 3hco_A* 3hcr_A* 2qd1_A* 2hre_A* 3hcp_A* 2qd2_A* 2hrc_A* 1hrk_A* 4f4d_A* 3aqi_A* 2pnj_A* 2po5_A* 2po7_A*
Probab=97.77 E-value=0.0002 Score=66.70 Aligned_cols=107 Identities=12% Similarity=0.078 Sum_probs=72.8
Q ss_pred CCCCchhH-HHHHHHHHHHHHHcC---CceEEEEEeccCCCCHHHHHHHHHHcCCCeEEEeeeccc-CcccccccHHHHH
Q 025917 135 GSRRRESN-LMLKQFVAMFREKTG---YLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLF-PGRHWCQDIPSLT 209 (246)
Q Consensus 135 GSr~pean-~~l~~lA~~L~~r~~---~~~V~vAFLE~~~PsL~eaLe~L~~qG~~rVvVVPlFL~-~G~Hv~~DIp~~l 209 (246)
||.-.... ...+.+.+.|.+..+ ...|++|| ....|++++++++|.++|+++|+++|++-. .+..+...+....
T Consensus 65 gSPL~~~t~~Q~~~L~~~L~~~~~~~~~~~V~~am-ry~~P~i~~~l~~l~~~G~~~ivvlPlyPqyS~~Ttgs~~~~~~ 143 (359)
T 3hcn_A 65 GSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIGF-RYVHPLTEEAIEEMERDGLERAIAFTQYPQYSCSTTGSSLNAIY 143 (359)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHCGGGCSEEEEEEE-SSSSSBHHHHHHHHHHTTCSEEEEEESCSSCCTTTHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHhhhcccccCceEEEEE-eeCCCCHHHHHHHHHhcCCCeEEEEECCccccccchhhHHHHHH
Confidence 45433322 234455566655432 24788888 568999999999999999999999998763 3344433333333
Q ss_pred HHHHHh--CCCceEEEcCCCCCChHHHHHHHHHHhc
Q 025917 210 AEAAKE--HPGVPYIVTAPLGLHEQLVVNNFVLSFA 243 (246)
Q Consensus 210 ~~~~~~--~Pgv~I~va~PLG~~p~Lva~ll~~Ry~ 243 (246)
+.+++. .|++++.+.++...||.++ +.++++..
T Consensus 144 ~~~~~~~~~~~~~~~~i~~~~~~p~yI-~a~a~~I~ 178 (359)
T 3hcn_A 144 RYYNQVGRKPTMKWSTIDRWPTHHLLI-QCFADHIL 178 (359)
T ss_dssp HHHHHTTCCCSSEEEEECCCTTCHHHH-HHHHHHHH
T ss_pred HHHHHhccCCCCceEEeCCccCCHHHH-HHHHHHHH
Confidence 333332 4677889999999999998 78887754
No 16
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=59.66 E-value=99 Score=27.76 Aligned_cols=88 Identities=17% Similarity=0.172 Sum_probs=54.4
Q ss_pred EEEEEeCCCC-CchhHHHHHHHHHHHHHHcCCceEEEEEeccCCC--CHHHHHHHHHHcCCCeEEEeeecccCccccccc
Q 025917 128 GVIIVDHGSR-RRESNLMLKQFVAMFREKTGYLIVEPAHMELAEP--SIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQD 204 (246)
Q Consensus 128 aLLLVgHGSr-~pean~~l~~lA~~L~~r~~~~~V~vAFLE~~~P--sL~eaLe~L~~qG~~rVvVVPlFL~~G~Hv~~D 204 (246)
.|-+|--|.. +..++....+=.+++.+..+. .+++-|.|.... ..++.++.+.++|++=|+...+ .+..
T Consensus 28 kIglv~~g~i~D~~f~~~~~~G~~~~~~~~G~-~~~~~~~e~~~~~~d~~~~l~~l~~~g~d~Ii~~g~------~~~~- 99 (356)
T 3s99_A 28 KVGFIYIGPPGDFGWTYQHDQARKELVEALGD-KVETTFLENVAEGADAERSIKRIARAGNKLIFTTSF------GYMD- 99 (356)
T ss_dssp EEEEECSSCGGGSSHHHHHHHHHHHHHHHHTT-TEEEEEECSCCTTHHHHHHHHHHHHTTCSEEEECSG------GGHH-
T ss_pred EEEEEEccCCCchhHHHHHHHHHHHHHHHhCC-ceEEEEEecCCCHHHHHHHHHHHHHCCCCEEEECCH------HHHH-
Confidence 3444445654 457888766666666666552 256777774332 4667899999999985554432 2222
Q ss_pred HHHHHHHHHHhCCCceEEEcCC
Q 025917 205 IPSLTAEAAKEHPGVPYIVTAP 226 (246)
Q Consensus 205 Ip~~l~~~~~~~Pgv~I~va~P 226 (246)
.+.++..+||++.+.+..-
T Consensus 100 ---~~~~vA~~~Pdv~fv~id~ 118 (356)
T 3s99_A 100 ---PTVKVAKKFPDVKFEHATG 118 (356)
T ss_dssp ---HHHHHHTTCTTSEEEEESC
T ss_pred ---HHHHHHHHCCCCEEEEEec
Confidence 4455666899998886543
No 17
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=43.60 E-value=64 Score=26.69 Aligned_cols=66 Identities=11% Similarity=0.071 Sum_probs=42.8
Q ss_pred CcEEEEEeCCCCCchhHHHHHHHHHHHHHHcCCceEEEEEeccCCC-CHHHHHHHHHHcCCCeEEEeee
Q 025917 126 KDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEP-SIKDAFGSCVQQGANRVIVSPF 193 (246)
Q Consensus 126 ~~aLLLVgHGSr~pean~~l~~lA~~L~~r~~~~~V~vAFLE~~~P-sL~eaLe~L~~qG~~rVvVVPl 193 (246)
+..|.++.....++-+...+..+.+.+++. ++ .+.+.+.....+ .-.+.++.+.+++++-|++.|.
T Consensus 4 ~~~I~~i~~~~~~~~~~~~~~gi~~~a~~~-g~-~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 70 (305)
T 3g1w_A 4 NETYMMITFQSGMDYWKRCLKGFEDAAQAL-NV-TVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAI 70 (305)
T ss_dssp -CEEEEEESSTTSTHHHHHHHHHHHHHHHH-TC-EEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCS
T ss_pred CceEEEEEccCCChHHHHHHHHHHHHHHHc-CC-EEEEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 456778888888888877778887777765 54 344422211111 2335677788889998988875
No 18
>3mtq_A Putative phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) permease...; PTS system fructose IIA component; 1.70A {Klebsiella pneumoniae subsp}
Probab=34.89 E-value=1.5e+02 Score=23.78 Aligned_cols=72 Identities=22% Similarity=0.159 Sum_probs=38.8
Q ss_pred CCCcEEEEEeCCCCCchhHHHHHHHHHHHHHHcCCceEEEEEeccCCCCHHHHHHHHHHc-C-CCeEEEeeecccCcccc
Q 025917 124 GDKDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQ-G-ANRVIVSPFFLFPGRHW 201 (246)
Q Consensus 124 ~~~~aLLLVgHGSr~pean~~l~~lA~~L~~r~~~~~V~vAFLE~~~PsL~eaLe~L~~q-G-~~rVvVVPlFL~~G~Hv 201 (246)
..+.++||++||. ....+...++++-..... ...+++..-....+.+.+++.+++ . .+.|+|+ .=++.|.-.
T Consensus 19 ~~~~~iII~sHG~----~A~gl~~s~~~i~G~~~~-v~av~~~~~~~~~~~~~~~~~i~~~~~~~gVLiL-tDl~GGSP~ 92 (159)
T 3mtq_A 19 GMKRHYIFASHGS----FANGLLNSVELILGKQPD-IHTLCAYVEEEVDLTQQVEALVARFPAQDELIVI-TDIFAGSVN 92 (159)
T ss_dssp SCCEEEEEEEETT----HHHHHHHHHHHHHCCCTT-EEEEEETSCSSSCHHHHHHHHHHTSCTTSEEEEE-ESCTTSHHH
T ss_pred ccCceEEEEeCcH----HHHHHHHHHHHHcCCCCC-eEEEECCCCCHHHHHHHHHHHHHhcCCCCCEEEE-EeCCCCCHH
Confidence 3567899999996 344566666666433222 123343221223688878777664 2 2344433 344555543
No 19
>3bed_A PTS system, IIA component; mannose/sorbose, phosphotransferase system, structural genom APC28805, PSI-2, protein structure initiative; HET: MSE MLY; 1.45A {Enterococcus faecalis} SCOP: c.54.1.1
Probab=28.27 E-value=89 Score=24.22 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=17.0
Q ss_pred CcEEEEEeCCCCCchhHHHHHHHHHHHH
Q 025917 126 KDGVIIVDHGSRRRESNLMLKQFVAMFR 153 (246)
Q Consensus 126 ~~aLLLVgHGSr~pean~~l~~lA~~L~ 153 (246)
+.++||++||. ....+...++++-
T Consensus 5 ~i~iiivsHG~----~A~gl~~~~~~i~ 28 (142)
T 3bed_A 5 XPKLILMSHGR----MAEETLASTQMIV 28 (142)
T ss_dssp CSEEEEEEETT----HHHHHHHHHHHHH
T ss_pred cccEEEEcChH----HHHHHHHHHHHHc
Confidence 37899999994 3455666666664
No 20
>3gdw_A Sigma-54 interaction domain protein; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=26.86 E-value=1.3e+02 Score=23.63 Aligned_cols=28 Identities=14% Similarity=0.197 Sum_probs=18.6
Q ss_pred CCcEEEEEeCCCCCchhHHHHHHHHHHHHHH
Q 025917 125 DKDGVIIVDHGSRRRESNLMLKQFVAMFREK 155 (246)
Q Consensus 125 ~~~aLLLVgHGSr~pean~~l~~lA~~L~~r 155 (246)
.+.++|+++||.+- ...+...++++-..
T Consensus 3 ~~igiiIvtHG~s~---A~~l~~~a~~i~G~ 30 (139)
T 3gdw_A 3 ANVGVFVLMHGDST---ASSMLKTAQELLGT 30 (139)
T ss_dssp CCCEEEEEEESSSH---HHHHHHHHHHHHTC
T ss_pred CceeEEEEcCCHHH---HHHHHHHHHHHcCc
Confidence 35789999999843 34456666666533
No 21
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=26.72 E-value=2.3e+02 Score=22.94 Aligned_cols=64 Identities=11% Similarity=0.085 Sum_probs=41.0
Q ss_pred EEEEEeCCCCCchhHHHHHHHHHHHHHHcCCceEEEEEeccCCCCHHHHHHHHHHcCCCeEEEeee
Q 025917 128 GVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPF 193 (246)
Q Consensus 128 aLLLVgHGSr~pean~~l~~lA~~L~~r~~~~~V~vAFLE~~~PsL~eaLe~L~~qG~~rVvVVPl 193 (246)
.|-++.....++.+...+..+.+.+++. ++ .+.+...+.....-.+.++.+.+++++-|++.|.
T Consensus 10 ~Ig~i~~~~~~~~~~~~~~gi~~~a~~~-g~-~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 73 (293)
T 3l6u_A 10 IVGFTIVNDKHEFAQRLINAFKAEAKAN-KY-EALVATSQNSRISEREQILEFVHLKVDAIFITTL 73 (293)
T ss_dssp EEEEEESCSCSHHHHHHHHHHHHHHHHT-TC-EEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECS
T ss_pred EEEEEEecCCcHHHHHHHHHHHHHHHHc-CC-EEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 4555556666676776777777777654 54 4555544321222346778888899999998875
No 22
>1to0_A Hypothetical UPF0247 protein YYDA; structural genomics, unknown function, PSI, protein structure initiative; 2.50A {Bacillus subtilis} SCOP: c.116.1.3
Probab=25.49 E-value=2.5e+02 Score=22.87 Aligned_cols=39 Identities=15% Similarity=0.375 Sum_probs=27.6
Q ss_pred cCcccc-cccHHHHHHHHHHhC-CCceEEEcCCCCCChHHH
Q 025917 196 FPGRHW-CQDIPSLTAEAAKEH-PGVPYIVTAPLGLHEQLV 234 (246)
Q Consensus 196 ~~G~Hv-~~DIp~~l~~~~~~~-Pgv~I~va~PLG~~p~Lv 234 (246)
..|..+ ..++.+.++.+.... .++.+.++.|.|.++.+.
T Consensus 78 ~~Gk~~sS~~fA~~l~~~~~~G~~~i~FvIGGa~Gl~~~v~ 118 (167)
T 1to0_A 78 IEGKMKTSEELADTIDKLATYGKSKVTFVIGGSLGLSDTVM 118 (167)
T ss_dssp EEEEECCHHHHHHHHHHHHTTTCCEEEEEECCSSCCCHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHH
Confidence 356444 455666777776543 468899999999999865
No 23
>2e7y_A TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.97A {Thermotoga maritima} SCOP: d.157.1.7 PDB: 1ww1_A
Probab=25.34 E-value=1.6e+02 Score=24.09 Aligned_cols=52 Identities=19% Similarity=0.321 Sum_probs=34.6
Q ss_pred CCHHHHHHHHHHcCCCeEEEeeecccCcccccccHHHHHHHHHHhCCCceEEEcCC
Q 025917 171 PSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQDIPSLTAEAAKEHPGVPYIVTAP 226 (246)
Q Consensus 171 PsL~eaLe~L~~qG~~rVvVVPlFL~~G~Hv~~DIp~~l~~~~~~~Pgv~I~va~P 226 (246)
-+.+++++.+.+.+.+++++. -+.+-.. .++.+.++++++.+++..+.++.+
T Consensus 223 ~t~~~a~~~~~~~~~~~lvl~--H~~~~~~--~~~~~~~~~~~~~~~~~~v~~a~~ 274 (280)
T 2e7y_A 223 AAIDEVMESVKAAGVKKVILY--HISTRYI--RQLKSVIKKYREEMPDVEILYMDP 274 (280)
T ss_dssp CBHHHHHHHHHHHTCCEEEEE--SCCGGGH--HHHHHHHHHHHHHCTTSEEEECCT
T ss_pred CCHHHHHHHHHHcCCCEEEEE--eecCcCc--chHHHHHHHHHHhCCCceEEEeCC
Confidence 367888887777777776655 3333221 145667777788899888887765
No 24
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=25.33 E-value=2.7e+02 Score=22.48 Aligned_cols=64 Identities=9% Similarity=-0.001 Sum_probs=39.0
Q ss_pred EEEEEeCCCCCchhHHHHHHHHHHHHHHcCCceEEEEEeccCCCCHHHHHHHHHHcCCCeEEEeee
Q 025917 128 GVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPF 193 (246)
Q Consensus 128 aLLLVgHGSr~pean~~l~~lA~~L~~r~~~~~V~vAFLE~~~PsL~eaLe~L~~qG~~rVvVVPl 193 (246)
.|-++..+..++-....+..+.+.+++. ++ .+.+...+.....-.+.++.+.+++++-|++.|.
T Consensus 7 ~Ig~i~~~~~~~~~~~~~~gi~~~a~~~-g~-~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 70 (291)
T 3l49_A 7 TIGITAIGTDHDWDLKAYQAQIAEIERL-GG-TAIALDAGRNDQTQVSQIQTLIAQKPDAIIEQLG 70 (291)
T ss_dssp EEEEEESCCSSHHHHHHHHHHHHHHHHT-TC-EEEEEECTTCHHHHHHHHHHHHHHCCSEEEEESS
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHHc-CC-EEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 4555555666666666667777776654 54 3444444321122346677888888988888765
No 25
>3dmp_A Uracil phosphoribosyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.60A {Burkholderia pseudomallei} SCOP: c.61.1.1
Probab=25.17 E-value=70 Score=27.20 Aligned_cols=44 Identities=20% Similarity=0.288 Sum_probs=32.2
Q ss_pred CHHHHHHHHHHcCC--CeEEEeeecccCcccccccHHHHHHHHHHhCCCceEEEc
Q 025917 172 SIKDAFGSCVQQGA--NRVIVSPFFLFPGRHWCQDIPSLTAEAAKEHPGVPYIVT 224 (246)
Q Consensus 172 sL~eaLe~L~~qG~--~rVvVVPlFL~~G~Hv~~DIp~~l~~~~~~~Pgv~I~va 224 (246)
++..+++.|.+.|. ++|.++=++- -|+-++.+.+.||+++|..+
T Consensus 144 T~~~ai~~L~~~G~pe~~I~~~~~va---------a~egl~~l~~~~P~v~i~ta 189 (217)
T 3dmp_A 144 SAAHAIDVLKRRGVPGERLMFLALVA---------APEGVQVFQDAHPDVKLYVA 189 (217)
T ss_dssp HHHHHHHHHHTTTCCGGGEEEECSEE---------CHHHHHHHHHHCTTCEEEES
T ss_pred HHHHHHHHHHHcCCCcCeEEEEEEEe---------CHHHHHHHHHHCCCCEEEEE
Confidence 57788888888898 8888775522 24567777788998887654
No 26
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=24.96 E-value=2.3e+02 Score=23.43 Aligned_cols=65 Identities=14% Similarity=0.118 Sum_probs=38.3
Q ss_pred cEEEEEeCCCCCchhHHHHHHHHHHHHHHcCCceEEEEEeccCCCCHHHHHHHHHHcCCCeEEEeee
Q 025917 127 DGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPF 193 (246)
Q Consensus 127 ~aLLLVgHGSr~pean~~l~~lA~~L~~r~~~~~V~vAFLE~~~PsL~eaLe~L~~qG~~rVvVVPl 193 (246)
..|-++.....++.+...+..+.+.+++. ++ .+.+...+.....-.+.++.+.+++++-|++.|.
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-g~-~~~~~~~~~~~~~~~~~i~~~~~~~vdgiIi~~~ 68 (330)
T 3uug_A 4 GSVGIAMPTKSSARWIDDGNNIVKQLQEA-GY-KTDLQYADDDIPNQLSQIENMVTKGVKVLVIASI 68 (330)
T ss_dssp CEEEEEECCSSSTHHHHHHHHHHHHHHHT-TC-EEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCS
T ss_pred cEEEEEeCCCcchHHHHHHHHHHHHHHHc-CC-EEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEEcC
Confidence 34555555566676766667777766654 54 4545543311111235667777788888888775
No 27
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=24.64 E-value=2.7e+02 Score=23.45 Aligned_cols=64 Identities=11% Similarity=0.045 Sum_probs=40.1
Q ss_pred cEEEEEeCCCCC-chhHHHHHHHHHHHHHHcCCceEEEEEeccCCCCHHHHHHHHHH--cCCCeEEEee
Q 025917 127 DGVIIVDHGSRR-RESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQ--QGANRVIVSP 192 (246)
Q Consensus 127 ~aLLLVgHGSr~-pean~~l~~lA~~L~~r~~~~~V~vAFLE~~~PsL~eaLe~L~~--qG~~rVvVVP 192 (246)
..|.++..+..+ +-+...+..+.+.+++. ++ .+.+...+.....-.+.++.+++ ++++-|++.|
T Consensus 4 ~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~-g~-~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~ 70 (350)
T 3h75_A 4 TSVVFLNPGNSTETFWVSYSQFMQAAARDL-GL-DLRILYAERDPQNTLQQARELFQGRDKPDYLMLVN 70 (350)
T ss_dssp CEEEEEECSCTTCHHHHHHHHHHHHHHHHH-TC-EEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEEC
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHHc-CC-eEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeC
Confidence 346666666665 77777777777777665 54 45555443211112356777877 5899999876
No 28
>2ehj_A Uracil phosphoribosyltransferase; structural genomics; 2.80A {Escherichia coli}
Probab=22.86 E-value=1.6e+02 Score=24.69 Aligned_cols=42 Identities=21% Similarity=0.244 Sum_probs=30.4
Q ss_pred CHHHHHHHHHHcCCCeEEEeeecccCcccccccHHHHHHHHHHhCCCceEE
Q 025917 172 SIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQDIPSLTAEAAKEHPGVPYI 222 (246)
Q Consensus 172 sL~eaLe~L~~qG~~rVvVVPlFL~~G~Hv~~DIp~~l~~~~~~~Pgv~I~ 222 (246)
++..+++.|.+.|.++|.++=++.. |+.++.+++.+|++.|.
T Consensus 138 T~~~ai~~L~~~G~~~I~~~~lv~~---------p~g~~~l~~~~p~v~I~ 179 (208)
T 2ehj_A 138 SVIATIDLLKKAGCSSIKVLVLVAA---------PEGIAALEKAHPDVELY 179 (208)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEEEEC---------HHHHHHHHHHCTTSEEE
T ss_pred HHHHHHHHHHHcCCCEEEEEEEEeC---------HHHHHHHHHHCCCcEEE
Confidence 6778888999999988888866322 34556666778887664
No 29
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=22.85 E-value=2.8e+02 Score=22.82 Aligned_cols=63 Identities=13% Similarity=0.111 Sum_probs=37.2
Q ss_pred EEEEeCCCCCchhHHHHHHHHHHHHHHcCCceEEEEEeccCCCCHHHHHHHHHHcCCCeEEEeee
Q 025917 129 VIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPF 193 (246)
Q Consensus 129 LLLVgHGSr~pean~~l~~lA~~L~~r~~~~~V~vAFLE~~~PsL~eaLe~L~~qG~~rVvVVPl 193 (246)
|-++.....++.+...+..+.+.+++. ++ .+.+...+.....-.+.++.+.+++++-|++.|.
T Consensus 5 Igvi~~~~~~~~~~~~~~gi~~~a~~~-g~-~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 67 (313)
T 3m9w_A 5 IGMAIDDLRLERWQKDRDIFVKKAESL-GA-KVFVQSANGNEETQMSQIENMINRGVDVLVIIPY 67 (313)
T ss_dssp EEEEESCCSSSTTHHHHHHHHHHHHHT-SC-EEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECS
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHHHc-CC-EEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 444445555666776677777766654 43 3444444321112335677777888888888775
No 30
>3lfh_A Manxa, phosphotransferase system, mannose/fructose-speci component IIA; PTS; 1.80A {Thermoanaerobacter tengcongensis} SCOP: c.54.1.0
Probab=22.80 E-value=1.3e+02 Score=23.69 Aligned_cols=24 Identities=21% Similarity=0.170 Sum_probs=16.9
Q ss_pred CcEEEEEeCCCCCchhHHHHHHHHHHHH
Q 025917 126 KDGVIIVDHGSRRRESNLMLKQFVAMFR 153 (246)
Q Consensus 126 ~~aLLLVgHGSr~pean~~l~~lA~~L~ 153 (246)
+.++||++||. ....+...++.+-
T Consensus 3 ~igiii~sHG~----~A~gl~~~~~~i~ 26 (144)
T 3lfh_A 3 EKFVLIITHGD----FGKGLLSGAEVII 26 (144)
T ss_dssp CEEEEEEEETT----HHHHHHHHHHHHH
T ss_pred cceEEEEeCcH----HHHHHHHHHHHHc
Confidence 46899999995 3445666666664
No 31
>4aie_A Glucan 1,6-alpha-glucosidase; hydrolase, glycoside hydrolase 13; HET: MES GOL; 2.05A {Lactobacillus acidophilus ncfm}
Probab=22.58 E-value=86 Score=28.76 Aligned_cols=48 Identities=19% Similarity=0.334 Sum_probs=32.1
Q ss_pred HHHHHHHHHHcCCCeEEEeeecccCcc-c---------------ccccHHHHHHHHHHhCCCceEE
Q 025917 173 IKDAFGSCVQQGANRVIVSPFFLFPGR-H---------------WCQDIPSLTAEAAKEHPGVPYI 222 (246)
Q Consensus 173 L~eaLe~L~~qG~~rVvVVPlFL~~G~-H---------------v~~DIp~~l~~~~~~~Pgv~I~ 222 (246)
+.+-|+.|.+.|++.|.+.|+|=+++. | ..+|+.+.++++.++ |++|+
T Consensus 34 i~~kLdYLk~LGvt~I~L~Pi~~~~~~~~GYd~~dy~~vdp~~Gt~~dfk~Lv~~aH~~--Gi~Vi 97 (549)
T 4aie_A 34 IISRLDYLEKLGIDAIWLSPVYQSPGVDNGYDISDYEAIDPQYGTMADMDELISKAKEH--HIKIV 97 (549)
T ss_dssp HHTTHHHHHHHTCSEEEECCCEECCCTTTTSSCSEEEEECTTTCCHHHHHHHHHHHHHT--TCEEE
T ss_pred HHHhhHHHHHCCCCEEEeCCCcCCCCCCCCcCccCCCCcCcccCCHHHHHHHHHHHHHC--CCEEE
Confidence 334466778889999999999988762 2 124566666666554 44444
No 32
>1xg8_A Hypothetical protein SA0798; structural genomics, protein structure initative, MCSG, PSI, protein structure initiative; 2.10A {Staphylococcus aureus subsp} SCOP: c.47.1.17
Probab=22.47 E-value=47 Score=25.89 Aligned_cols=64 Identities=6% Similarity=0.064 Sum_probs=43.7
Q ss_pred chhHHHHHHHHHHHHHHcCCceEEEEEeccCCCCHH--HHHHHHHHcCCCeEEEeeecccCccccc
Q 025917 139 RESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIK--DAFGSCVQQGANRVIVSPFFLFPGRHWC 202 (246)
Q Consensus 139 pean~~l~~lA~~L~~r~~~~~V~vAFLE~~~PsL~--eaLe~L~~qG~~rVvVVPlFL~~G~Hv~ 202 (246)
|.+.++++=+...|+++.|..+..+-|+++..|.=+ +.-+++.++=.+.=...|+.+..|.-+.
T Consensus 26 PSSkeTyEWLqAal~RKyp~~~f~~~YIDI~~~~~~l~d~~~~~ae~I~ede~FYPlV~indeiVa 91 (111)
T 1xg8_A 26 PTSKDIYDWLQPLLKRKYPNISFKYTYIDITKDNDNLTDHDLQFIERIEQDELFYPLITMNDEYVA 91 (111)
T ss_dssp CCHHHHHHHHHHHHHHHCTTSCEEEEEEETTTC---CCHHHHHHHHHHHTTSSCSSEEEETTEEEE
T ss_pred CCchhHHHHHHHHHhCcCCCCceEEEEEeccCCccchhHHHHHHHHHHhhccccceEEEECCEEee
Confidence 678889999999999999999999999998777544 4222222221233456788777776654
No 33
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=22.24 E-value=3e+02 Score=22.13 Aligned_cols=65 Identities=11% Similarity=0.113 Sum_probs=42.8
Q ss_pred EEEEEeCCCCCchhHHHHHHHHHHHHHHcCCceEEEEEeccCCCCHHHHHHHHHHcCCCeEEEeeec
Q 025917 128 GVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFF 194 (246)
Q Consensus 128 aLLLVgHGSr~pean~~l~~lA~~L~~r~~~~~V~vAFLE~~~PsL~eaLe~L~~qG~~rVvVVPlF 194 (246)
.|-++.....++.+...+..+.+.+++. ++ .+.+...+.....-.+.++.+.+++++-|++.|..
T Consensus 17 ~Igvi~~~~~~~~~~~~~~gi~~~a~~~-g~-~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 81 (298)
T 3tb6_A 17 TIGVLTTYISDYIFPSIIRGIESYLSEQ-GY-SMLLTSTNNNPDNERRGLENLLSQHIDGLIVEPTK 81 (298)
T ss_dssp EEEEEESCSSSTTHHHHHHHHHHHHHHT-TC-EEEEEECTTCHHHHHHHHHHHHHTCCSEEEECCSS
T ss_pred eEEEEeCCCCchHHHHHHHHHHHHHHHC-CC-EEEEEeCCCChHHHHHHHHHHHHCCCCEEEEeccc
Confidence 4555556666777777777777777764 54 45555544211223467788888999999998764
No 34
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=21.87 E-value=3.6e+02 Score=22.77 Aligned_cols=33 Identities=12% Similarity=0.311 Sum_probs=16.3
Q ss_pred EEEEEeccCCCCHHHHHH---HHHHcCCCeEEE-eee
Q 025917 161 VEPAHMELAEPSIKDAFG---SCVQQGANRVIV-SPF 193 (246)
Q Consensus 161 V~vAFLE~~~PsL~eaLe---~L~~qG~~rVvV-VPl 193 (246)
..+.|+-...|++++.++ .|.+.|++-|-+ +||
T Consensus 18 ~~i~~i~~g~p~~~~~~~~~~~l~~~G~D~IElG~P~ 54 (262)
T 2ekc_A 18 ALVSYLMVGYPDYETSLKAFKEVLKNGTDILEIGFPF 54 (262)
T ss_dssp EEEEEEETTSSCHHHHHHHHHHHHHTTCSEEEEECCC
T ss_pred eEEEEecCCCCChHHHHHHHHHHHHcCCCEEEECCCC
Confidence 345555445566554432 334445655555 344
No 35
>2y7p_A LYSR-type regulatory protein; transcription regulator, DNA-binding, transcription, transcr factor, transcription regulation; HET: SAL PEU; 1.85A {Burkholderia SP} PDB: 2y7k_A* 2y84_A 2y7w_A 2y7r_A
Probab=21.19 E-value=89 Score=24.37 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=17.2
Q ss_pred cHHHHHHHHHHhCCCceEEEcC
Q 025917 204 DIPSLTAEAAKEHPGVPYIVTA 225 (246)
Q Consensus 204 DIp~~l~~~~~~~Pgv~I~va~ 225 (246)
-+|..+..++++||++++.+..
T Consensus 22 ~lp~~l~~f~~~~P~v~l~l~~ 43 (218)
T 2y7p_A 22 FMPPLMEALAQRAPHIQISTLR 43 (218)
T ss_dssp HHHHHHHHHHHHCTTCEEEEEC
T ss_pred HHHHHHHHHHHHCCCCEEEEEe
Confidence 5677888888888888887765
No 36
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=20.90 E-value=3.2e+02 Score=22.00 Aligned_cols=65 Identities=14% Similarity=0.153 Sum_probs=40.5
Q ss_pred EEEEEeCCCCCchhHHHHHHHHHHHHHHcCCceEEEEEeccCCCCHHHHHHHHHHcCCCeEEEeeec
Q 025917 128 GVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFF 194 (246)
Q Consensus 128 aLLLVgHGSr~pean~~l~~lA~~L~~r~~~~~V~vAFLE~~~PsL~eaLe~L~~qG~~rVvVVPlF 194 (246)
.|-++.....++.+...+..+.+.+++. ++ .+.+...+.....-.+.++.+.+++++-|++.|..
T Consensus 9 ~Igvi~~~~~~~~~~~~~~gi~~~~~~~-g~-~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 73 (276)
T 3jy6_A 9 LIAVIVANIDDYFSTELFKGISSILESR-GY-IGVLFDANADIEREKTLLRAIGSRGFDGLILQSFS 73 (276)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHHHHTT-TC-EEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSC
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHHC-CC-EEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCC
Confidence 4555555556666777777777777654 54 45555544211123356777888889999998764
No 37
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*
Probab=20.80 E-value=2.2e+02 Score=24.63 Aligned_cols=44 Identities=9% Similarity=0.025 Sum_probs=31.3
Q ss_pred HHHHHHHHHHcCCCeEEEeeecccCcccccccHHHHHHHHHHhCCCc
Q 025917 173 IKDAFGSCVQQGANRVIVSPFFLFPGRHWCQDIPSLTAEAAKEHPGV 219 (246)
Q Consensus 173 L~eaLe~L~~qG~~rVvVVPlFL~~G~Hv~~DIp~~l~~~~~~~Pgv 219 (246)
+.+.++.+.+.|++.|.+. =.-|...-.++.+.++.+++..|++
T Consensus 158 ~~~~~~~~~~~Ga~~i~l~---DT~G~~~P~~~~~lv~~l~~~~~~~ 201 (298)
T 2cw6_A 158 VAEVTKKFYSMGCYEISLG---DTIGVGTPGIMKDMLSAVMQEVPLA 201 (298)
T ss_dssp HHHHHHHHHHTTCSEEEEE---ETTSCCCHHHHHHHHHHHHHHSCGG
T ss_pred HHHHHHHHHHcCCCEEEec---CCCCCcCHHHHHHHHHHHHHhCCCC
Confidence 4455667788899877666 3356666677888888888887753
No 38
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=20.43 E-value=95 Score=24.64 Aligned_cols=27 Identities=11% Similarity=-0.048 Sum_probs=22.6
Q ss_pred CcEEEEEeCCCCCchhHHHHHHHHHHH
Q 025917 126 KDGVIIVDHGSRRRESNLMLKQFVAMF 152 (246)
Q Consensus 126 ~~aLLLVgHGSr~pean~~l~~lA~~L 152 (246)
+.-+|++|.|....++.+.+.++++++
T Consensus 35 krPvil~G~g~~~~~a~~~l~~lae~~ 61 (170)
T 3cf4_G 35 KRPLLMVGTLALDPELLDRVVKISKAA 61 (170)
T ss_dssp SSEEEEECSTTCCHHHHHHHHHHHHHH
T ss_pred CCCEEEECCCccchhHHHHHHHHHHHh
Confidence 457999999999888888888888776
No 39
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=20.43 E-value=2.2e+02 Score=23.30 Aligned_cols=62 Identities=16% Similarity=0.121 Sum_probs=42.0
Q ss_pred cEEEEEeCCCCCchhHHHHHHHHHHHHHHcCCceEEEEEeccCCCCHHHHHHHHHHcCCCeEEEeeec
Q 025917 127 DGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFF 194 (246)
Q Consensus 127 ~aLLLVgHGSr~pean~~l~~lA~~L~~r~~~~~V~vAFLE~~~PsL~eaLe~L~~qG~~rVvVVPlF 194 (246)
.++++ ...++.+...+..+.+.+++. ++ .+.++..+. .+.-.+.++.+.+++++-|++.|..
T Consensus 15 Igvi~---~~~~~~~~~~~~gi~~~a~~~-g~-~~~~~~~~~-~~~~~~~~~~l~~~~vdgiIi~~~~ 76 (289)
T 3k9c_A 15 LGVVF---ELQQPFHGDLVEQIYAAATRR-GY-DVMLSAVAP-SRAEKVAVQALMRERCEAAILLGTR 76 (289)
T ss_dssp EEEEE---ETTCHHHHHHHHHHHHHHHHT-TC-EEEEEEEBT-TBCHHHHHHHHTTTTEEEEEEETCC
T ss_pred EEEEE---ecCCchHHHHHHHHHHHHHHC-CC-EEEEEeCCC-CHHHHHHHHHHHhCCCCEEEEECCC
Confidence 34554 455677777777777777765 54 466666653 3346778888888889889888753
No 40
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=20.23 E-value=3.4e+02 Score=21.90 Aligned_cols=64 Identities=14% Similarity=0.099 Sum_probs=40.2
Q ss_pred EEEEEeCCCCCchhHHHHHHHHHHHHHHcCCceEEEEEeccCCCC---HHHHHHHHHHcCCCeEEEeeec
Q 025917 128 GVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPS---IKDAFGSCVQQGANRVIVSPFF 194 (246)
Q Consensus 128 aLLLVgHGSr~pean~~l~~lA~~L~~r~~~~~V~vAFLE~~~Ps---L~eaLe~L~~qG~~rVvVVPlF 194 (246)
.|-++.....++-+...+..+.+.+++. ++ .+.+...+. ..+ -.+.++.+.+++++-|++.|..
T Consensus 7 ~Igvi~~~~~~~~~~~~~~g~~~~a~~~-g~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~vdgiii~~~~ 73 (304)
T 3o1i_D 7 KICAIYPHLKDSYWLSVNYGMVSEAEKQ-GV-NLRVLEAGG-YPNKSRQEQQLALCTQWGANAIILGTVD 73 (304)
T ss_dssp EEEEEESCSCSHHHHHHHHHHHHHHHHH-TC-EEEEEECSS-TTCHHHHHHHHHHHHHHTCSEEEECCSS
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHHc-CC-eEEEEcCCC-CCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 4545555556666666677777777655 54 455554442 113 3356778888899999988764
Done!