BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025919
         (246 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2HCZ|X Chain X, Crystal Structure Of Expb1 (Zea M 1), A Beta-Expansin And
           Group-1 Pollen Allergen From Maize
          Length = 245

 Score = 77.4 bits (189), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 99/240 (41%), Gaps = 32/240 (13%)

Query: 19  YGQGWTDAHATFYXXXXXXXXXXXXXXYG--NLYSEGYGTNTAALSTALFNNGMSCGACF 76
           Y   W  A AT+Y               G  N+    Y   TA  +  +F +G  CG+C+
Sbjct: 15  YNGKWLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCY 74

Query: 77  EIKCVNDPRWC-RPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQ-- 133
           E++C   P     P ++++T  N+                    HFDLS   F  +A+  
Sbjct: 75  EVRCKEKPECSGNPVTVYITDMNYEPIA--------------PYHFDLSGKAFGSLAKPG 120

Query: 134 -----YKAGIVPVSYRRVPCSRKGGIRFTINGHSYFN----LVLITNVGGAGDVRAVSIK 184
                   GI+ V +RRV C    G +   +     N     VL+  V   GD+  + I+
Sbjct: 121 LNDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQ 180

Query: 185 GSRT-DWQPMSRNWGQNWQSNS--YLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTFS 241
              + +W+PM  +WG  W+ ++   L G   S ++T+  G  V++ +V PA W     ++
Sbjct: 181 DKLSAEWKPMKLSWGAIWRMDTAKALKG-PFSIRLTSESGKKVIAKDVIPANWRPDAVYT 239


>pdb|1N10|A Chain A, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen
           Allergen
 pdb|1N10|B Chain B, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen
           Allergen
          Length = 241

 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 95/239 (39%), Gaps = 30/239 (12%)

Query: 19  YGQGWTDAHATFYXXXXXXXXXXXXXX--YGNLYSEGYGTNTAALSTALFNNGMSCGACF 76
           YG  W DA +T+Y                Y ++    +   T   +T +F +G  CG+CF
Sbjct: 15  YGDKWLDAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKSGRGCGSCF 74

Query: 77  EIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQY-- 134
           EIKC   P  C    + V  T+                     HFDLS   F  +A+   
Sbjct: 75  EIKCTK-PEACSGEPVVVHITDDNEEPIA------------PYHFDLSGHAFGAMAKKGD 121

Query: 135 -----KAGIVPVSYRRVPCSRKGGIRFTINGHSYFN----LVLITNVGGAGDVRAVSIKG 185
                 AG + + +RRV C    G + T +     N     +L+  V G GDV AV IK 
Sbjct: 122 EQKLRSAGELELQFRRVKCKYPEGTKVTFHVEKGSNPNYLALLVKYVNGDGDVVAVDIKE 181

Query: 186 SRTD-WQPMSRNWGQNWQSNS--YLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTFS 241
              D W  +  +WG  W+ ++   L G   + + TT  G    + +V P GW    ++ 
Sbjct: 182 KGKDKWIELKESWGAIWRIDTPDKLTG-PFTVRYTTEGGTKTEAEDVIPEGWKADTSYE 239


>pdb|2XE4|A Chain A, Structure Of Oligopeptidase B From Leishmania Major
          Length = 751

 Score = 32.3 bits (72), Expect = 0.26,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 150 RKGGIRFTINGHSYFNLVLITNVGGAGDVR-AVSIKGSRTDW 190
           R+ G+R+ +  H   +LV++TN GGA + +  ++ +G  +DW
Sbjct: 317 REKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDW 358


>pdb|1UDD|A Chain A, Tena Homologue Protein From P.Horikoshii Ot3
 pdb|1UDD|B Chain B, Tena Homologue Protein From P.Horikoshii Ot3
 pdb|1UDD|C Chain C, Tena Homologue Protein From P.Horikoshii Ot3
 pdb|1UDD|D Chain D, Tena Homologue Protein From P.Horikoshii Ot3
          Length = 226

 Score = 28.1 bits (61), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 195 RNWGQNWQSNSYLNGQSLSFKVTTSDGHT 223
           R WG+ + SN YLN      K+  S GH+
Sbjct: 160 REWGKVYLSNEYLNLVGRLRKIIDSSGHS 188


>pdb|3KRT|A Chain A, Crystal Structure Of Putative Crotonyl Coa Reductase From
           Streptomyces Coelicolor A3(2)
 pdb|3KRT|B Chain B, Crystal Structure Of Putative Crotonyl Coa Reductase From
           Streptomyces Coelicolor A3(2)
 pdb|3KRT|C Chain C, Crystal Structure Of Putative Crotonyl Coa Reductase From
           Streptomyces Coelicolor A3(2)
 pdb|3KRT|D Chain D, Crystal Structure Of Putative Crotonyl Coa Reductase From
           Streptomyces Coelicolor A3(2)
          Length = 456

 Score = 27.3 bits (59), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 13/43 (30%), Positives = 19/43 (44%)

Query: 201 WQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTFSGL 243
           WQ+   +    LS ++ +SDGH     +     W F   F GL
Sbjct: 139 WQAGDEVVAHCLSVELESSDGHNDTMLDPEQRIWGFETNFGGL 181


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.135    0.452 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,821,491
Number of Sequences: 62578
Number of extensions: 256134
Number of successful extensions: 478
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 470
Number of HSP's gapped (non-prelim): 14
length of query: 246
length of database: 14,973,337
effective HSP length: 96
effective length of query: 150
effective length of database: 8,965,849
effective search space: 1344877350
effective search space used: 1344877350
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)