Query 025919
Match_columns 246
No_of_seqs 157 out of 1072
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 11:02:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025919.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025919hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00050 expansin A; Provision 100.0 9.1E-71 2E-75 484.1 27.8 245 1-245 1-247 (247)
2 PLN00193 expansin-A; Provision 100.0 7.3E-70 1.6E-74 480.1 28.8 227 19-245 26-256 (256)
3 PLN03023 Expansin-like B1; Pro 100.0 1.6E-62 3.4E-67 431.6 26.2 222 7-245 8-246 (247)
4 COG4305 Endoglucanase C-termin 100.0 4.2E-29 9.2E-34 206.7 19.3 195 20-246 27-231 (232)
5 PLN03024 Putative EG45-like do 100.0 2.9E-28 6.3E-33 194.8 13.7 116 6-145 6-125 (125)
6 smart00837 DPBB_1 Rare lipopro 99.9 9.9E-27 2.2E-31 175.3 8.9 86 58-143 1-87 (87)
7 PLN00115 pollen allergen group 99.9 1.4E-23 3E-28 166.0 10.8 87 153-245 25-118 (118)
8 PF01357 Pollen_allerg_1: Poll 99.9 6.6E-22 1.4E-26 147.6 9.5 77 154-231 1-82 (82)
9 PF03330 DPBB_1: Rare lipoprot 99.8 4.6E-19 1E-23 130.6 6.8 73 58-143 1-78 (78)
10 PF00967 Barwin: Barwin family 99.1 6.5E-11 1.4E-15 92.3 4.4 60 68-148 56-119 (119)
11 PF07249 Cerato-platanin: Cera 98.1 1.8E-05 3.8E-10 63.0 9.0 66 57-147 44-113 (119)
12 TIGR00413 rlpA rare lipoprotei 98.0 9.6E-05 2.1E-09 63.8 11.5 96 26-151 1-96 (208)
13 COG0797 RlpA Lipoproteins [Cel 97.9 0.00011 2.3E-09 64.6 10.2 60 72-149 119-178 (233)
14 PRK10672 rare lipoprotein A; P 97.4 0.0018 4E-08 60.4 11.5 59 71-147 114-172 (361)
15 PF02015 Glyco_hydro_45: Glyco 90.5 0.26 5.6E-06 42.6 3.2 54 58-126 70-123 (201)
16 cd02854 Glycogen_branching_enz 75.0 6.5 0.00014 30.0 4.7 48 178-225 16-76 (99)
17 PF08194 DIM: DIM protein; In 63.6 5.2 0.00011 25.2 1.6 17 1-17 1-18 (36)
18 PF03404 Mo-co_dimer: Mo-co ox 60.9 13 0.00028 29.9 3.9 47 177-223 42-106 (131)
19 cd02110 SO_family_Moco_dimer S 57.9 19 0.00042 33.1 5.0 49 175-223 235-293 (317)
20 PF10417 1-cysPrx_C: C-termina 49.2 9.4 0.0002 24.4 1.0 12 228-239 10-21 (40)
21 TIGR02588 conserved hypothetic 40.6 1.9E+02 0.0041 23.2 8.2 33 153-186 35-73 (122)
22 PF07172 GRP: Glycine rich pro 38.4 17 0.00038 27.7 1.2 18 3-20 8-25 (95)
23 PLN00177 sulfite oxidase; Prov 37.3 83 0.0018 30.0 5.9 25 170-194 290-315 (393)
24 PF08138 Sex_peptide: Sex pept 35.5 12 0.00027 25.6 0.0 12 1-12 1-12 (56)
25 cd02114 bact_SorA_Moco sulfite 33.7 96 0.0021 29.3 5.7 50 174-223 286-345 (367)
26 cd02113 bact_SoxC_Moco bacteri 33.0 67 0.0014 29.9 4.4 50 174-223 236-294 (326)
27 cd02855 Glycogen_branching_enz 32.6 1.5E+02 0.0032 21.7 5.6 34 191-224 49-85 (106)
28 cd02861 E_set_proteins_like E 29.5 1.1E+02 0.0024 21.8 4.3 45 179-224 14-60 (82)
29 cd02111 eukary_SO_Moco molybdo 29.5 1.4E+02 0.003 28.2 6.0 54 170-223 270-339 (365)
30 PF15240 Pro-rich: Proline-ric 27.8 41 0.00088 28.7 1.8 16 4-19 2-17 (179)
31 PRK13701 psiB plasmid SOS inhi 27.2 2.5E+02 0.0053 23.1 6.1 44 137-184 58-105 (144)
32 PF08770 SoxZ: Sulphur oxidati 26.7 1.3E+02 0.0028 23.0 4.3 53 166-227 45-97 (100)
33 COG2372 CopC Uncharacterized p 25.1 1.1E+02 0.0023 24.8 3.7 27 133-159 96-125 (127)
34 PF11912 DUF3430: Protein of u 25.0 64 0.0014 27.2 2.6 23 1-23 1-23 (212)
35 PRK10301 hypothetical protein; 24.1 1.2E+02 0.0026 24.0 3.9 27 133-159 95-124 (124)
36 PF04202 Mfp-3: Foot protein 3 23.9 53 0.0011 23.6 1.5 19 1-19 1-19 (71)
37 PRK10564 maltose regulon perip 22.3 2.3E+02 0.0049 26.3 5.7 76 141-245 48-127 (303)
38 cd02859 AMPKbeta_GBD_like AMP- 22.1 3E+02 0.0064 19.6 5.4 56 167-227 4-62 (79)
39 PF03100 CcmE: CcmE; InterPro 21.9 1E+02 0.0022 24.5 3.1 30 210-239 71-101 (131)
40 PRK13159 cytochrome c-type bio 21.0 1.2E+02 0.0025 25.3 3.3 29 211-239 73-102 (155)
41 PF02922 CBM_48: Carbohydrate- 20.7 2.1E+02 0.0045 20.1 4.3 35 191-225 40-79 (85)
No 1
>PLN00050 expansin A; Provisional
Probab=100.00 E-value=9.1e-71 Score=484.08 Aligned_cols=245 Identities=80% Similarity=1.416 Sum_probs=227.2
Q ss_pred ChhhHHHHHHHHHhhcccc--CCCceEEEEEEeCCCCCCCCCccccCCCcCCCCCCCCeEEEeChhhhCCCCCCcceEEE
Q 025919 1 MAFLGLLLLGILSLVSSVY--GQGWTDAHATFYGGGDASGTMGGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEI 78 (246)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~--~~~~~~g~aT~Y~~~~~~~~~~GaCgy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~~V 78 (246)
|.-|+.-++.+|+++--.+ ..+|..++|||||+++++++++|||||+++..++++.++||+|+++|++|++||+||||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~W~~a~AT~Yg~~dg~gt~gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyeV 80 (247)
T PLN00050 1 MECLGYTIVALLSILKIVEGYGSGWTGAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEI 80 (247)
T ss_pred CcchhhhHHHHhhhheeccccCCCccccEEEEcCCCCCCCCCCcccCCCCccccCCCceeeeccHhHccCCccccceEEE
Confidence 5567766667776665554 46899999999999999899999999999888889999999999999999999999999
Q ss_pred EEcCCCCCccCCeEEEEEeCCCCCCCCCCCCCCCCCCCCCCceecCHHHHHHhhcccCCEEEEEEEEeecCCCCceEEEE
Q 025919 79 KCVNDPRWCRPGSIFVTATNFCPPNNALPNNAGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTI 158 (246)
Q Consensus 79 ~c~~~p~~C~~gsv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLS~~AF~~ia~~~~G~i~i~w~~V~C~~~gni~~~v 158 (246)
+|.+.+..|.+++|+|+|||+||++++.|+.+++||++++.|||||.+||.+||....|+++|+||||+|+++|||+|++
T Consensus 81 ~C~~~~~~C~~gsV~V~itd~CP~~~~~~~~~~gwC~~~~~hFDLS~~AF~~iA~~~aGii~V~yRRVpC~~~G~i~f~v 160 (247)
T PLN00050 81 KCVNDNIWCLPGSIIITATNFCPPNLALPNNDGGWCNPPQQHFDLSQPVFQKIAQYKAGIVPVQYRRVACRKSGGIRFTI 160 (247)
T ss_pred EcCCCCcccCCCcEEEEEecCCCCCcCcCccCCCcCCCCCcccccCHHHHHHHhhhcCCeeeeEEEEecCcCCCCeEEEE
Confidence 99876567988899999999999988888889999998899999999999999999999999999999999999999999
Q ss_pred cCccceEEEEEEeeCCCcceeEEEEecCCCceeecCCCCCceEEeCCCCCCcceEEEEEecCCcEEEEccccCCCCCCCe
Q 025919 159 NGHSYFNLVLITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQ 238 (246)
Q Consensus 159 ~~~~~~~~v~v~n~~G~~~I~~Vev~~~~~~w~~m~r~~gn~W~~~~~~~g~p~~vRiT~~~G~~v~~~~vip~~w~~G~ 238 (246)
++++||++|+|.|++|+++|++|+|++++.+|++|+|+||++|+.++++.++||+||||+.+|+++++.||||++|++|+
T Consensus 161 ~g~sy~~~vlv~nv~G~gdi~~V~ikg~~~~W~~M~R~wGa~W~~~~~l~g~~lsfRvt~~~G~~~~~~~V~Pa~W~~G~ 240 (247)
T PLN00050 161 NGHSYFNLVLITNVGGAGDIVAVSIKGSKSNWQAMSRNWGQNWQSNSYLNGQALSFKVTTSDGRTVISNNAAPSNWAFGQ 240 (247)
T ss_pred cCCceeEEEEEEEcCCCccEEEEEEecCCCCeeECccccCceeEccCCCCCCcEEEEEEecCCcEEEECceeCCCCCCCC
Confidence 99889999999999999999999999987789999999999999988888779999999999999999999999999999
Q ss_pred EEeCCCC
Q 025919 239 TFSGLQV 245 (246)
Q Consensus 239 ~y~~~q~ 245 (246)
+|+++||
T Consensus 241 ty~~~~f 247 (247)
T PLN00050 241 TYTGMQF 247 (247)
T ss_pred eEecCcC
Confidence 9999987
No 2
>PLN00193 expansin-A; Provisional
Probab=100.00 E-value=7.3e-70 Score=480.14 Aligned_cols=227 Identities=70% Similarity=1.303 Sum_probs=215.0
Q ss_pred cCCCceEEEEEEeCCCCCCCCCccccCCCcCCCCCCCCeEEEeChhhhCCCCCCcceEEEEEcC--CCCCccCC-eEEEE
Q 025919 19 YGQGWTDAHATFYGGGDASGTMGGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVN--DPRWCRPG-SIFVT 95 (246)
Q Consensus 19 ~~~~~~~g~aT~Y~~~~~~~~~~GaCgy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~~V~c~~--~p~~C~~g-sv~v~ 95 (246)
..++|.+|+||||+++++.++++|||||+++..++++.++||+|+++|++|++||+||||+|.. .+..|.++ +|+|+
T Consensus 26 ~~~~W~~a~AT~Yg~~d~~gt~gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyev~C~~~~~~~~C~~g~sV~Vt 105 (256)
T PLN00193 26 TPSGWTKAHATFYGGSDASGTMGGACGYGNLYSTGYGTRTAALSTALFNDGASCGQCYRIMCDYQADSRWCIKGASVTIT 105 (256)
T ss_pred CCCCceeeEEEEcCCCCCCCCCCcccCCCCccccCCCceeeecCHhHccCCccccCeEEEECCCCCCCccccCCCeEEEE
Confidence 3568999999999999988889999999998888899999999999999999999999999952 35679877 99999
Q ss_pred EeCCCCCCCCCCCCCCCCCCCCCCceecCHHHHHHhhcccCCEEEEEEEEeecCCCCceEEEEcCccceEEEEEEeeCCC
Q 025919 96 ATNFCPPNNALPNNAGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGA 175 (246)
Q Consensus 96 V~D~Cp~~~~~~~~~~~~C~~~~~~~DLS~~AF~~ia~~~~G~i~i~w~~V~C~~~gni~~~v~~~~~~~~v~v~n~~G~ 175 (246)
|||+||.++..|+.|++||++++.|||||.+||.+||....|+++|+||||+|+++|+|+|++++++||++|+|.|++|+
T Consensus 106 ~td~CP~n~~~~~~~ggwC~~~~~HFDLS~~AF~~iA~~~~Giv~V~yrRVpC~~~G~i~f~v~gn~y~~~vlv~nv~G~ 185 (256)
T PLN00193 106 ATNFCPPNYALPNNNGGWCNPPLQHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKKHGGVRFTINGRDYFELVLISNVGGA 185 (256)
T ss_pred EecCCCCcccccccCCCcCCCCCcccccCHHHHHHHhhhcCCeEeEEEEEeccccCCCcEEEEcCCccEEEEEEEEeCCC
Confidence 99999999988999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEEEEecCCCceeecCCCCCceEEeCCCCCCcceEEEEEecCCcEEEEccccCCCCCCCeEEeCC-CC
Q 025919 176 GDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTFSGL-QV 245 (246)
Q Consensus 176 ~~I~~Vev~~~~~~w~~m~r~~gn~W~~~~~~~g~p~~vRiT~~~G~~v~~~~vip~~w~~G~~y~~~-q~ 245 (246)
++|++|||++++++|++|+|+||++|+++.++.++||+||||+.+|+++++.||||++|++|++|+++ ||
T Consensus 186 gdV~~v~Ik~~~~~W~~M~R~wGa~W~~~~~l~g~plsfRvts~~G~~~~~~~viPa~W~~G~ty~s~vqf 256 (256)
T PLN00193 186 GSIQSVSIKGSKTGWMAMSRNWGANWQSNAYLDGQSLSFKVTTTDGQTRFFLNVVPANWGFGQTFSSSVQF 256 (256)
T ss_pred ccEEEEEEecCCCCeeECcccccceeEecCCCCCCCEEEEEEEcCCeEEEECceeCCCCCCCCeEecCccC
Confidence 99999999998778999999999999999888877999999999999999999999999999999998 98
No 3
>PLN03023 Expansin-like B1; Provisional
Probab=100.00 E-value=1.6e-62 Score=431.58 Aligned_cols=222 Identities=29% Similarity=0.627 Sum_probs=195.1
Q ss_pred HHHHHHHhhcccc-CCCceEEEEEEeCCCCCCCCCccccCCCcCCCCCCCCeEEEeChhhhCCCCCCcceEEEEEcCCCC
Q 025919 7 LLLGILSLVSSVY-GQGWTDAHATFYGGGDASGTMGGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPR 85 (246)
Q Consensus 7 ~~~~~~~~~~~~~-~~~~~~g~aT~Y~~~~~~~~~~GaCgy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~~V~c~~~p~ 85 (246)
|+|.++.++..++ .++|.+++|||||+++++++.+|||||+++..+.++.++||++ ++|++|++||+||||+|.+ +.
T Consensus 8 ~~~~~~~~~~~~~~~~~W~~a~AT~Yg~~~g~gt~gGACGYg~~~~~~~g~~~aa~s-~Lf~~G~~CGaCy~irC~~-~~ 85 (247)
T PLN03023 8 CFLCVIVLLPLLCKSQDFTYSRATYYGSPDCLGTPTGACGFGEYGRTVNGGNVAGVS-RLYRNGTGCGACYQVRCKA-PN 85 (247)
T ss_pred HHHHHHHHhhhhhhcCCcccceEEEeCCCCCCCCCCccccCCccccCCCcceeeeeh-hhhcCCchhcccEEeecCC-CC
Confidence 3444444444443 5789999999999999999999999999987777888999999 9999999999999999976 56
Q ss_pred CccCCeEEEEEeCCCCCCCCCCCCCCCCCCCCCCceecCHHHHHHhhcc-------cCCEEEEEEEEeecCCCC-ceEEE
Q 025919 86 WCRPGSIFVTATNFCPPNNALPNNAGGWCNPPQQHFDLSQPVFEQIAQY-------KAGIVPVSYRRVPCSRKG-GIRFT 157 (246)
Q Consensus 86 ~C~~gsv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLS~~AF~~ia~~-------~~G~i~i~w~~V~C~~~g-ni~~~ 157 (246)
.|.+++|+|+|||.||. ++.|||||.+||.+||.+ ..|+++|+||||||.++| +|+|+
T Consensus 86 ~C~~~~v~V~iTd~~~~--------------~~~hFdLS~~AF~~iA~pg~~~~l~~aGiv~v~YrRVpC~~~G~~i~F~ 151 (247)
T PLN03023 86 LCSDDGVNVVVTDYGEG--------------DKTDFILSPRAYARLARPNMAAELFAYGVVDVEYRRIPCRYAGYNLFFK 151 (247)
T ss_pred ccCCCCeEEEEEeCCCC--------------CCCccccCHHHHHHHhCccccchhccCcEEEeEEEEEecccCCCceEEE
Confidence 89988999999999985 368999999999999984 569999999999999999 99999
Q ss_pred Ec--Cc-cceEEEEEEeeCCCcceeEEEEecCC-CceeecCCCCCceEEeCCCCCCcceEEEE--EecCCc-EEEEcccc
Q 025919 158 IN--GH-SYFNLVLITNVGGAGDVRAVSIKGSR-TDWQPMSRNWGQNWQSNSYLNGQSLSFKV--TTSDGH-TVVSNNVA 230 (246)
Q Consensus 158 v~--~~-~~~~~v~v~n~~G~~~I~~Vev~~~~-~~w~~m~r~~gn~W~~~~~~~g~p~~vRi--T~~~G~-~v~~~~vi 230 (246)
|+ ++ ++|++|+|.|++|+++|++|||++.+ ..|++|+|+||++|+++.+|+| ||+||+ |..+|+ +|+++|||
T Consensus 152 V~~~s~~p~yl~vlv~~vgG~GdI~~V~Ik~~~~~~W~~M~rnwGa~W~~~~~l~G-p~slrf~v~~~~g~~~vva~nVi 230 (247)
T PLN03023 152 VHEHSRFPDYLAIVMLYQAGQNDILAVEIWQEDCKEWRGMRKAYGAVWDMPNPPKG-PITLRFQVSGSAGQTWVQAKNVI 230 (247)
T ss_pred EecCCCCCceEEEEEEEcCCCccEEEEEEEecCCCCceECccCCcceeEcCCCCCC-ceeEEEEEEeCCCcEEEEECcee
Confidence 98 33 78999999999999999999999864 6899999999999999988987 666666 455775 48999999
Q ss_pred CCCCCCCeEEeCC-CC
Q 025919 231 PAGWSFGQTFSGL-QV 245 (246)
Q Consensus 231 p~~w~~G~~y~~~-q~ 245 (246)
|++|++|++|+++ ||
T Consensus 231 Pa~Wk~G~TY~s~vq~ 246 (247)
T PLN03023 231 PSDWKAGVAYDSNIQL 246 (247)
T ss_pred CCCCCCCCEEeccccc
Confidence 9999999999999 98
No 4
>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism]
Probab=99.97 E-value=4.2e-29 Score=206.73 Aligned_cols=195 Identities=22% Similarity=0.343 Sum_probs=163.6
Q ss_pred CCCceEEEEEEeCCCCCCCCCccccCCCcCCCCCCCCeEEEeChhhhCCC----CCCcceEEEEEcCCCCCccCCeEEEE
Q 025919 20 GQGWTDAHATFYGGGDASGTMGGACGYGNLYSEGYGTNTAALSTALFNNG----MSCGACFEIKCVNDPRWCRPGSIFVT 95 (246)
Q Consensus 20 ~~~~~~g~aT~Y~~~~~~~~~~GaCgy~~~~~~~~~~~~aA~s~~~~~~g----~~CG~C~~V~c~~~p~~C~~gsv~v~ 95 (246)
-.+.++|.|||-+... ++||-... +.+.+..+.|+|+++-+-| ++-|+.+||.+ | +|+.+|.
T Consensus 27 wd~~f~G~ATyTgsGY----sGGAflLD---PI~sd~eITAlNPaqlNlGGipAAmAGaYLrVqG---P----KG~TTVY 92 (232)
T COG4305 27 WDDLFEGYATYTGSGY----SGGAFLLD---PIPSDMEITALNPAQLNLGGIPAAMAGAYLRVQG---P----KGKTTVY 92 (232)
T ss_pred cccccceeEEEecccc----cCceEEec---CcCCcceeeecCHHHcccCCchhhhccceEEEEC---C----CCceEEE
Confidence 3455789999776433 47887654 3455667999999988865 68999999998 4 4689999
Q ss_pred EeCCCCCCCCCCCCCCCCCCCCCCceecCHHHHHHhhcccCCEEEEEEEEeecCCCCceEEEEc--CccceEEEEEEeeC
Q 025919 96 ATNFCPPNNALPNNAGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTIN--GHSYFNLVLITNVG 173 (246)
Q Consensus 96 V~D~Cp~~~~~~~~~~~~C~~~~~~~DLS~~AF~~ia~~~~G~i~i~w~~V~C~~~gni~~~v~--~~~~~~~v~v~n~~ 173 (246)
|||..|++ ..+.||||+.||.+|++..+|+|+|+||.|+-|..||+.+++| ++.||.++|++|+.
T Consensus 93 VTDlYPeg-------------asGaLDLSpNAFakIGnm~qGrIpvqWrvv~aPvtGN~~YRiKeGSs~WWAAIQVRnH~ 159 (232)
T COG4305 93 VTDLYPEG-------------ASGALDLSPNAFAKIGNMKQGRIPVQWRVVKAPVTGNFTYRIKEGSSRWWAAIQVRNHK 159 (232)
T ss_pred Eecccccc-------------cccccccChHHHhhhcchhcCccceeEEEecccccccEEEEEecCCccceeeeeeeccc
Confidence 99999983 3588999999999999999999999999999999999999999 47899999999998
Q ss_pred CCcceeEEEEecCCCceeecCCCCCceEEeCCCCCCcceEEEEEecCCcEEEEc-cccCCCCCCCeEEe--CC-CCC
Q 025919 174 GAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSN-NVAPAGWSFGQTFS--GL-QVP 246 (246)
Q Consensus 174 G~~~I~~Vev~~~~~~w~~m~r~~gn~W~~~~~~~g~p~~vRiT~~~G~~v~~~-~vip~~w~~G~~y~--~~-q~~ 246 (246)
.||.++|+..+ +.|..|.+.+||+|.-. .|...||.+|+||+.|+.++.+ ..+|..-+- ..|. ++ ||+
T Consensus 160 --yPV~KlE~~qd-g~WinlpK~dYNhFVgT-~LG~~pL~~RmTDIRG~~l~DtlP~Lpk~asS-KaY~V~G~VQFs 231 (232)
T COG4305 160 --YPVMKLEYEQD-GKWINLPKMDYNHFVGT-NLGTGPLKVRMTDIRGKVLKDTLPKLPKSASS-KAYTVPGHVQFS 231 (232)
T ss_pred --CceEEEEEecC-CeEeeccccccceeecc-ccCCCceEEEEeecccceeecccccccccccC-CceeecceeecC
Confidence 89999999987 78999999999999854 3655699999999999999988 577876663 3354 44 886
No 5
>PLN03024 Putative EG45-like domain containing protein 1; Provisional
Probab=99.96 E-value=2.9e-28 Score=194.85 Aligned_cols=116 Identities=37% Similarity=0.638 Sum_probs=95.7
Q ss_pred HHHHHHHHhhccccCCCceEEEEEEeCCCCCCCCCccccCCCcCCCCCCCCeEEEeChhhhCCCCCCcceEEEEEcCC--
Q 025919 6 LLLLGILSLVSSVYGQGWTDAHATFYGGGDASGTMGGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVND-- 83 (246)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~g~aT~Y~~~~~~~~~~GaCgy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~~V~c~~~-- 83 (246)
|||+.+++.+.+++.. .+|+||||++.+ .||| |++ .+++.++||+++++|++|+.||+||||+|.+.
T Consensus 6 ~~~~~~~~~~~~~~~~--~~G~AT~Y~~~~-----~gAC-~~~---~~~g~~iaAls~~lf~~G~~CG~c~~V~C~~~~~ 74 (125)
T PLN03024 6 LIFSTVLVFLFSVSYA--TPGIATFYTSYT-----PSAC-YRG---TSFGVMIAAASDSLWNNGRVCGKMFTVKCKGPRN 74 (125)
T ss_pred HHHHHHHHHHhhhhcc--cceEEEEeCCCC-----Cccc-cCC---CCCCCEeEEeCHHHcCCCcccCceEEEEECCCCc
Confidence 5566666666666544 679999998754 5899 443 24778999999999999999999999999752
Q ss_pred --CCCccCCeEEEEEeCCCCCCCCCCCCCCCCCCCCCCceecCHHHHHHhhcccCCEEEEEEEE
Q 025919 84 --PRWCRPGSIFVTATNFCPPNNALPNNAGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR 145 (246)
Q Consensus 84 --p~~C~~gsv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLS~~AF~~ia~~~~G~i~i~w~~ 145 (246)
+..|.+++|+|+|+|+||.. |. .|||||++||++||+++.|+++|+|.+
T Consensus 75 ~~~~~c~gksV~V~VtD~CP~~----------C~---~~~DLS~~AF~~iA~~~aG~v~V~y~~ 125 (125)
T PLN03024 75 AVPHPCTGKSVTVKIVDHCPSG----------CA---STLDLSREAFAQIANPVAGIINIDYIP 125 (125)
T ss_pred cccccccCCeEEEEEEcCCCCC----------CC---CceEcCHHHHHHhcCccCCEEEEEEeC
Confidence 24688889999999999951 63 699999999999999999999999974
No 6
>smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel. Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.
Probab=99.94 E-value=9.9e-27 Score=175.33 Aligned_cols=86 Identities=80% Similarity=1.504 Sum_probs=80.0
Q ss_pred EEEeChhhhCCCCCCcceEEEEEcCCCCCccCC-eEEEEEeCCCCCCCCCCCCCCCCCCCCCCceecCHHHHHHhhcccC
Q 025919 58 TAALSTALFNNGMSCGACFEIKCVNDPRWCRPG-SIFVTATNFCPPNNALPNNAGGWCNPPQQHFDLSQPVFEQIAQYKA 136 (246)
Q Consensus 58 ~aA~s~~~~~~g~~CG~C~~V~c~~~p~~C~~g-sv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLS~~AF~~ia~~~~ 136 (246)
+||+|+++|++|++||+||||+|.++|..|.++ +|+|+|||+||.++..++.+++||.++++|||||.+||.+||....
T Consensus 1 taA~s~~lf~~G~~CG~Cy~v~C~~~~~~C~~~~~V~V~vtd~CP~~~~~~~~~~~~C~~~~~hfDLS~~AF~~iA~~~~ 80 (87)
T smart00837 1 TAALSTALFNNGASCGACYEIMCVDSPKWCKPGGSITVTATNFCPPNYALSNDNGGWCNPPRKHFDLSQPAFEKIAQYKA 80 (87)
T ss_pred CcccCHHHccCCccccceEEEEeCCCCCcccCCCeEEEEEeccCCccccccccCCCccCCCCcCeEcCHHHHHHHhhhcC
Confidence 479999999999999999999997666789875 9999999999998888888899999889999999999999999999
Q ss_pred CEEEEEE
Q 025919 137 GIVPVSY 143 (246)
Q Consensus 137 G~i~i~w 143 (246)
|+|+|+|
T Consensus 81 Gvi~v~y 87 (87)
T smart00837 81 GIVPVKY 87 (87)
T ss_pred CEEeeEC
Confidence 9999987
No 7
>PLN00115 pollen allergen group 3; Provisional
Probab=99.90 E-value=1.4e-23 Score=165.96 Aligned_cols=87 Identities=23% Similarity=0.385 Sum_probs=78.4
Q ss_pred ceEEEEc--CccceEEEEEEeeCCCcceeEEEEecCC-Ccee-ecCCCCCceEEeCC--CCCCcceEEEEEecCCcEEEE
Q 025919 153 GIRFTIN--GHSYFNLVLITNVGGAGDVRAVSIKGSR-TDWQ-PMSRNWGQNWQSNS--YLNGQSLSFKVTTSDGHTVVS 226 (246)
Q Consensus 153 ni~~~v~--~~~~~~~v~v~n~~G~~~I~~Vev~~~~-~~w~-~m~r~~gn~W~~~~--~~~g~p~~vRiT~~~G~~v~~ 226 (246)
+|+|+|+ ++++|+++++ | ++|.+|||++.+ ..|+ +|+|+||++|++++ +|+| ||+||+|+.+|+++++
T Consensus 25 ~v~F~V~~gSnp~yL~ll~-~----~dI~~V~Ik~~g~~~W~~~M~rswGavW~~~s~~pl~G-PlS~R~t~~~G~~~va 98 (118)
T PLN00115 25 EVTFKVGKGSSSTSLELVT-N----VAISEVEIKEKGAKDWVDDLKESSTNTWTLKSKAPLKG-PFSVRFLVKGGGYRVV 98 (118)
T ss_pred ceEEEECCCCCcceEEEEE-e----CCEEEEEEeecCCCcccCccccCccceeEecCCCCCCC-ceEEEEEEeCCCEEEE
Confidence 7999998 4688887765 4 469999999986 6899 99999999999765 6887 9999999999999999
Q ss_pred ccccCCCCCCCeEEeCC-CC
Q 025919 227 NNVAPAGWSFGQTFSGL-QV 245 (246)
Q Consensus 227 ~~vip~~w~~G~~y~~~-q~ 245 (246)
+||||++|+||++|+++ ||
T Consensus 99 ~nViPa~Wk~G~tY~s~vq~ 118 (118)
T PLN00115 99 DDVIPESFKAGSVYKTGIQV 118 (118)
T ss_pred CceECCCCCCCCEEeccccC
Confidence 99999999999999999 97
No 8
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []. They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.
Probab=99.87 E-value=6.6e-22 Score=147.59 Aligned_cols=77 Identities=48% Similarity=0.939 Sum_probs=63.7
Q ss_pred eEEEEc--CccceEEEEEEeeCCCcceeEEEEecCC-CceeecCCCCCceEEeC-CCCCCcceEEEEEecC-CcEEEEcc
Q 025919 154 IRFTIN--GHSYFNLVLITNVGGAGDVRAVSIKGSR-TDWQPMSRNWGQNWQSN-SYLNGQSLSFKVTTSD-GHTVVSNN 228 (246)
Q Consensus 154 i~~~v~--~~~~~~~v~v~n~~G~~~I~~Vev~~~~-~~w~~m~r~~gn~W~~~-~~~~g~p~~vRiT~~~-G~~v~~~~ 228 (246)
|+|+|+ +++||++++|.|++|.++|++|||++++ .+|++|+|+||++|+++ .+++ .||+||||+.+ |++++++|
T Consensus 1 v~f~V~~gS~~~~l~v~v~n~gG~gdi~~Vevk~~~s~~W~~m~r~wGa~W~~~~~~~~-~pls~Rvts~~~G~~vv~~n 79 (82)
T PF01357_consen 1 VRFTVKGGSNPYYLAVLVKNVGGDGDIKAVEVKQSGSGNWIPMKRSWGAVWQIDSNPPG-GPLSFRVTSGDSGQTVVADN 79 (82)
T ss_dssp EEEEE-TT-BTTEEEEEEEECCTTS-EEEEEEEETTSSS-EE-EEECTTEEEEE-SS---SSEEEEEEETTTSEEEEEEE
T ss_pred CEEEECCCCCCcEEEEEEEEcCCCccEEEEEEEeCCCCCceEeecCcCceEEECCCCcC-CCEEEEEEEcCCCeEEEEec
Confidence 689998 4699999999999999999999999876 66999999999999998 5555 59999999976 99999999
Q ss_pred ccC
Q 025919 229 VAP 231 (246)
Q Consensus 229 vip 231 (246)
|||
T Consensus 80 ViP 82 (82)
T PF01357_consen 80 VIP 82 (82)
T ss_dssp EE-
T ss_pred ccC
Confidence 998
No 9
>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures. They are classified in terms of two integral parameters: the number of strands in the sheet, n, and the shear number, S, a measure of the stagger of the strands in the beta-sheet. These two parameters have been shown to determine the major geometrical features of beta-barrels. Six-stranded beta-barrels with a pseudo-twofold axis are found in several proteins. One involving parallel strands forming two psi structures is known as the double-psi barrel. The first psi structure consists of the loop connecting strands beta1 and beta2 (a 'psi loop') and the strand beta5, whereas the second psi structure consists of the loop connecting strands beta4 and beta5 and the strand beta2. All the psi structures in double-psi barrels have a unique handedness, in that beta1 (beta4), beta2 (beta5) and the loop following beta5 (beta2) form a right-handed helix. The unique handedness may be related to the fact that the twisting angle between the parallel pair of strands is always larger than that between the antiparallel pair [].; PDB: 1N10_B 3D30_A 2BH0_A 2HCZ_X.
Probab=99.77 E-value=4.6e-19 Score=130.61 Aligned_cols=73 Identities=37% Similarity=0.831 Sum_probs=61.1
Q ss_pred EEEeChhhhCCCCCCcceEEEEEcCC-CCC--ccC--CeEEEEEeCCCCCCCCCCCCCCCCCCCCCCceecCHHHHHHhh
Q 025919 58 TAALSTALFNNGMSCGACFEIKCVND-PRW--CRP--GSIFVTATNFCPPNNALPNNAGGWCNPPQQHFDLSQPVFEQIA 132 (246)
Q Consensus 58 ~aA~s~~~~~~g~~CG~C~~V~c~~~-p~~--C~~--gsv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLS~~AF~~ia 132 (246)
+||++..+|++|.+||+||+++|... ... |.. ++|+|+|+|+||+ |. .+|||||+.||++|+
T Consensus 1 t~a~~~~~y~~g~~cG~~~~~~~~~~a~~~~~~~~~~ksV~v~V~D~Cp~-----------~~--~~~lDLS~~aF~~la 67 (78)
T PF03330_consen 1 TAAGSATWYDNGTACGQCYQVTCLTAASATGTCKVGNKSVTVTVVDRCPG-----------CP--PNHLDLSPAAFKALA 67 (78)
T ss_dssp EEEE-HHHHGGGTTTT-EEEEEE---SSTT--BESEECEEEEEEEEE-TT-----------SS--SSEEEEEHHHHHHTB
T ss_pred CeEEEhhhcCCCCcCCCeeeccccccCCccceEEecCCeEEEEEEccCCC-----------Cc--CCEEEeCHHHHHHhC
Confidence 58999999999999999999999431 222 776 8999999999998 74 699999999999999
Q ss_pred cccCCEEEEEE
Q 025919 133 QYKAGIVPVSY 143 (246)
Q Consensus 133 ~~~~G~i~i~w 143 (246)
.++.|+++|+|
T Consensus 68 ~~~~G~i~V~w 78 (78)
T PF03330_consen 68 DPDAGVIPVEW 78 (78)
T ss_dssp STTCSSEEEEE
T ss_pred CCCceEEEEEC
Confidence 99999999999
No 10
>PF00967 Barwin: Barwin family; InterPro: IPR001153 Barwin is a basic protein isolated from aqueous extracts of barley seeds. It is 125 amino acids in length, and contains six cysteine residues that combine to form three disulphide bridges [, ]. Comparative analysis shows the sequence to be highly similar to a 122 amino acid stretch in the C-terminal of the products of two wound-induced genes (win1 and win2) from potato, the product of the hevein gene of rubber trees, and pathogenesis-related protein 4 from tobacco. The high levels of similarity to these proteins, and their ability to bind saccharides, suggest that the barwin domain may be involved in a common defence mechanism in plants.; GO: 0042742 defense response to bacterium, 0050832 defense response to fungus; PDB: 1BW3_A 1BW4_A.
Probab=99.11 E-value=6.5e-11 Score=92.31 Aligned_cols=60 Identities=30% Similarity=0.582 Sum_probs=44.6
Q ss_pred CCCCCcceEEEEEcCCCCCccCCeEEEEEeCCCCCCCCCCCCCCCCCCCCCCceecCHHHHHHhhc----ccCCEEEEEE
Q 025919 68 NGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCPPNNALPNNAGGWCNPPQQHFDLSQPVFEQIAQ----YKAGIVPVSY 143 (246)
Q Consensus 68 ~g~~CG~C~~V~c~~~p~~C~~gsv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLS~~AF~~ia~----~~~G~i~i~w 143 (246)
+...||+|++||.+.. +.+++|+|+|+|+. ++|||.+.+|++|-. ...|.+.|+|
T Consensus 56 gq~~CGkClrVTNt~t-----ga~~~~RIVDqCsn----------------GGLDld~~vF~~iDtdG~G~~~Ghl~V~y 114 (119)
T PF00967_consen 56 GQDSCGKCLRVTNTAT-----GAQVTVRIVDQCSN----------------GGLDLDPTVFNQIDTDGQGYAQGHLIVDY 114 (119)
T ss_dssp SGGGTT-EEEEE-TTT-------EEEEEEEEE-SS----------------SSEES-SSSHHHH-SSSHHHHHTEEEEEE
T ss_pred CcccccceEEEEecCC-----CcEEEEEEEEcCCC----------------CCcccChhHHhhhccCCcccccceEEEEE
Confidence 4568999999999763 24999999999975 589999999999953 3679999999
Q ss_pred EEeec
Q 025919 144 RRVPC 148 (246)
Q Consensus 144 ~~V~C 148 (246)
++|+|
T Consensus 115 ~fV~C 119 (119)
T PF00967_consen 115 EFVDC 119 (119)
T ss_dssp EEE--
T ss_pred EEEcC
Confidence 99999
No 11
>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 Cerato-platanin (CP) is the first member of the cerato-platanin family. It is produced by the Ascomycete Ceratocystis fimbriata f. sp. platani and causes the severe plant disease: canker stain. This protein occurs in the cell wall of the fungus and is involved in the host-plane interaction and induces both cell necrosis and phytoalexin synthesis which is one of the first plant defense-related events. CP, like other fungal surface proteins, is able to self assemble in vitro []. CP is a 120 amino acid protein, containing 40% hydrophobic residues and two S-S bridges. It contains four cysteine residues that form two disulphide bonds []. The N-terminal region of CP is very similar to cerato-ulmin, a phytotoxic protein produced by the Ophiostoma species belonging to the hydrophobin family, which also self-assembles []. This entry also includes other precursor proteins.; PDB: 2KQA_A 3M3G_A.
Probab=98.14 E-value=1.8e-05 Score=62.96 Aligned_cols=66 Identities=23% Similarity=0.442 Sum_probs=47.1
Q ss_pred eEEEeCh-hhhCCCCCCcceEEEEEcCCCCCccCCeEEEEEeCCCCCCCCCCCCCCCCCCCCCCceecCHHHHHHhhcc-
Q 025919 57 NTAALST-ALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCPPNNALPNNAGGWCNPPQQHFDLSQPVFEQIAQY- 134 (246)
Q Consensus 57 ~~aA~s~-~~~~~g~~CG~C~~V~c~~~p~~C~~gsv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLS~~AF~~ia~~- 134 (246)
.|.+... +-| ++..||.|+|++-.+ ++|.|..+|.=+ ..|+|+.+||+.|.+.
T Consensus 44 ~IGg~~~V~gW-nS~~CGtC~~lty~g-------~si~vlaID~a~-----------------~gfnis~~A~n~LT~g~ 98 (119)
T PF07249_consen 44 YIGGAPAVAGW-NSPNCGTCWKLTYNG-------RSIYVLAIDHAG-----------------GGFNISLDAMNDLTNGQ 98 (119)
T ss_dssp SEEEETT--ST-T-TTTT-EEEEEETT-------EEEEEEEEEE-S-----------------SSEEE-HHHHHHHHTS-
T ss_pred eeccccccccC-CCCCCCCeEEEEECC-------eEEEEEEEecCC-----------------CcccchHHHHHHhcCCc
Confidence 4666654 346 457999999999942 499999999843 4599999999999873
Q ss_pred --cCCEEEEEEEEee
Q 025919 135 --KAGIVPVSYRRVP 147 (246)
Q Consensus 135 --~~G~i~i~w~~V~ 147 (246)
..|+|+++|++|+
T Consensus 99 a~~lG~V~a~~~qV~ 113 (119)
T PF07249_consen 99 AVELGRVDATYTQVD 113 (119)
T ss_dssp CCCC-EEE-EEEEE-
T ss_pred ccceeEEEEEEEEcC
Confidence 6799999999996
No 12
>TIGR00413 rlpA rare lipoprotein A. This is a family of prokaryotic proteins with unknown function. Lipoprotein annotation based on the presence of consensus lipoprotein signal sequence. Included in this family is the E. coli putative lipoprotein rlpA.
Probab=98.00 E-value=9.6e-05 Score=63.84 Aligned_cols=96 Identities=18% Similarity=0.200 Sum_probs=69.4
Q ss_pred EEEEEeCCCCCCCCCccccCCCcCCCCCCCCeEEEeChhhhCCCCCCcceEEEEEcCCCCCccCCeEEEEEeCCCCCCCC
Q 025919 26 AHATFYGGGDASGTMGGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCPPNNA 105 (246)
Q Consensus 26 g~aT~Y~~~~~~~~~~GaCgy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~~V~c~~~p~~C~~gsv~v~V~D~Cp~~~~ 105 (246)
|.|+|||+.... ...|.|-.. . ...|.||-. ..-.|..++|+...+ +.+|+|+|.|++|-.
T Consensus 1 G~ASwYg~~f~G--~~TAnGe~y--~--~~~~tAAHk------tLPlgT~V~VtNl~n-----grsviVrVnDRGPf~-- 61 (208)
T TIGR00413 1 GLASWYGPKFHG--RKTANGEVY--N--MKALTAAHK------TLPFNTYVKVTNLHN-----NRSVIVRINDRGPFS-- 61 (208)
T ss_pred CEEeEeCCCCCC--CcCCCCeec--C--CCccccccc------cCCCCCEEEEEECCC-----CCEEEEEEeCCCCCC--
Confidence 689999864210 124444221 1 123455544 236899999999864 359999999999972
Q ss_pred CCCCCCCCCCCCCCceecCHHHHHHhhcccCCEEEEEEEEeecCCC
Q 025919 106 LPNNAGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRK 151 (246)
Q Consensus 106 ~~~~~~~~C~~~~~~~DLS~~AF~~ia~~~~G~i~i~w~~V~C~~~ 151 (246)
+.--+|||..|+.+|+-...|+.+|+.+.+.....
T Consensus 62 -----------~gRiIDLS~aAA~~Lg~~~~G~a~V~vevl~~~~~ 96 (208)
T TIGR00413 62 -----------DDRIIDLSHAAAREIGLISRGVGQVRIEVLHVAKN 96 (208)
T ss_pred -----------CCCEEECCHHHHHHcCCCcCceEEEEEEEEecCCC
Confidence 24679999999999999999999999999987653
No 13
>COG0797 RlpA Lipoproteins [Cell envelope biogenesis, outer membrane]
Probab=97.90 E-value=0.00011 Score=64.62 Aligned_cols=60 Identities=13% Similarity=0.227 Sum_probs=51.9
Q ss_pred CcceEEEEEcCCCCCccCCeEEEEEeCCCCCCCCCCCCCCCCCCCCCCceecCHHHHHHhhcccCCEEEEEEEEeecC
Q 025919 72 CGACFEIKCVNDPRWCRPGSIFVTATNFCPPNNALPNNAGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCS 149 (246)
Q Consensus 72 CG~C~~V~c~~~p~~C~~gsv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLS~~AF~~ia~~~~G~i~i~w~~V~C~ 149 (246)
=|.-++|+..++ +.+|+|+|.|++|- . ..-.||||..|+++|+-.+.|+.+|+.+++.+.
T Consensus 119 ~~t~v~VtNl~N-----grsvvVRINDRGPf------------~-~gRiIDlS~aAA~~l~~~~~G~a~V~i~~l~~~ 178 (233)
T COG0797 119 LPTYVRVTNLDN-----GRSVVVRINDRGPF------------V-SGRIIDLSKAAADKLGMIRSGVAKVRIEVLGVA 178 (233)
T ss_pred CCCEEEEEEccC-----CcEEEEEEeCCCCC------------C-CCcEeEcCHHHHHHhCCccCceEEEEEEEeccc
Confidence 367899999875 35999999999995 2 346899999999999999999999999999976
No 14
>PRK10672 rare lipoprotein A; Provisional
Probab=97.42 E-value=0.0018 Score=60.36 Aligned_cols=59 Identities=15% Similarity=0.174 Sum_probs=48.8
Q ss_pred CCcceEEEEEcCCCCCccCCeEEEEEeCCCCCCCCCCCCCCCCCCCCCCceecCHHHHHHhhcccCCEEEEEEEEee
Q 025919 71 SCGACFEIKCVNDPRWCRPGSIFVTATNFCPPNNALPNNAGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVP 147 (246)
Q Consensus 71 ~CG~C~~V~c~~~p~~C~~gsv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLS~~AF~~ia~~~~G~i~i~w~~V~ 147 (246)
--|..++|+..++ +++|+|+|.|++|-. +.--||||..|+++|+-...+.+.|+.-.|.
T Consensus 114 Plps~vrVtNl~n-----grsvvVrVnDRGP~~-------------~gRiiDLS~aAA~~Lg~~~~~~V~ve~i~v~ 172 (361)
T PRK10672 114 PIPSYVRVTNLAN-----GRMIVVRINDRGPYG-------------PGRVIDLSRAAADRLNTSNNTKVRIDPIIVA 172 (361)
T ss_pred CCCCEEEEEECCC-----CcEEEEEEeCCCCCC-------------CCCeeEcCHHHHHHhCCCCCceEEEEEEeeC
Confidence 4688999999875 359999999999962 2467999999999998877778888877763
No 15
>PF02015 Glyco_hydro_45: Glycosyl hydrolase family 45; InterPro: IPR000334 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 45 GH45 from CAZY comprises enzymes with only one known activity; endoglucanase (3.2.1.4 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases, cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produce a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family K or as the glycosyl hydrolases family 45 []. The best conserved regions in these enzymes is located in the N-terminal section. It contains an aspartic acid residue which has been shown [] to act as a nucleophile in the catalytic mechanism. This also has several cysteines that are involved in forming disulphide bridges.; GO: 0008810 cellulase activity, 0005975 carbohydrate metabolic process; PDB: 1OA7_A 1OA9_A 1L8F_A 1HD5_A 4ENG_A 3ENG_A 2ENG_A.
Probab=90.50 E-value=0.26 Score=42.63 Aligned_cols=54 Identities=28% Similarity=0.374 Sum_probs=31.4
Q ss_pred EEEeChhhhCCCCCCcceEEEEEcCCCCCccCCeEEEEEeCCCCCCCCCCCCCCCCCCCCCCceecCHH
Q 025919 58 TAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCPPNNALPNNAGGWCNPPQQHFDLSQP 126 (246)
Q Consensus 58 ~aA~s~~~~~~g~~CG~C~~V~c~~~p~~C~~gsv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLS~~ 126 (246)
+||++-.--.....|++|||++-++.+ -..++.+|++++.=-+ -..+||||..+
T Consensus 70 faA~~~~G~~e~~~Cc~Cy~LtFt~g~--l~GKkmiVQ~tNtG~d-------------lg~n~FDl~iP 123 (201)
T PF02015_consen 70 FAAASITGGSESSWCCACYELTFTSGP--LKGKKMIVQVTNTGGD-------------LGSNQFDLAIP 123 (201)
T ss_dssp EEEEE-TT--HHHHTT-EEEEEE-SST--TTT-EEEEEEEEE-TT-------------TTTTEEEEE-T
T ss_pred eeeeeecCCCCCCcccceEEEEEcCCC--cCCCEeEEEecccCCC-------------CCCCeEEEEeC
Confidence 566662211223679999999998743 2245999999986433 13589999753
No 16
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=74.98 E-value=6.5 Score=29.98 Aligned_cols=48 Identities=17% Similarity=0.397 Sum_probs=33.9
Q ss_pred eeEEEEecCCCcee----ecCCCCCceEEeCCC---------CCCcceEEEEEecCCcEEE
Q 025919 178 VRAVSIKGSRTDWQ----PMSRNWGQNWQSNSY---------LNGQSLSFKVTTSDGHTVV 225 (246)
Q Consensus 178 I~~Vev~~~~~~w~----~m~r~~gn~W~~~~~---------~~g~p~~vRiT~~~G~~v~ 225 (246)
-++|+|.++-..|. +|+|....+|++.-+ ..+..+.+||+..+|+++.
T Consensus 16 A~~V~l~GdFn~W~~~~~~m~k~~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G~~~~ 76 (99)
T cd02854 16 AEEVYLIGDFNNWDRNAHPLKKDEFGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSGEWID 76 (99)
T ss_pred CCEEEEEccCCCCCCcCcccEECCCCEEEEEECCcccccccCCCCCEEEEEEEeCCCCEEE
Confidence 35677776545664 488877779986522 2566899999998888763
No 17
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=63.64 E-value=5.2 Score=25.20 Aligned_cols=17 Identities=35% Similarity=0.512 Sum_probs=10.6
Q ss_pred ChhhHH-HHHHHHHhhcc
Q 025919 1 MAFLGL-LLLGILSLVSS 17 (246)
Q Consensus 1 ~~~~~~-~~~~~~~~~~~ 17 (246)
||+|++ +++.+|.++..
T Consensus 1 Mk~l~~a~~l~lLal~~a 18 (36)
T PF08194_consen 1 MKCLSLAFALLLLALAAA 18 (36)
T ss_pred CceeHHHHHHHHHHHHhc
Confidence 889888 55555554443
No 18
>PF03404 Mo-co_dimer: Mo-co oxidoreductase dimerisation domain; InterPro: IPR005066 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This domain is found in molybdopterin cofactor oxidoreductases, such as in the C-terminal of Mo-containing sulphite oxidase, which catalyses the conversion of sulphite to sulphate, the terminal step in the oxidative degradation of cysteine and methionine []. This domain is involved in dimer formation, and has an Ig-fold structure [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2C9X_A 2CA3_A 2BLF_A 2CA4_A 2BPB_A 2XTS_C 2BII_A 2BIH_A 1OGP_A 2A9A_B ....
Probab=60.92 E-value=13 Score=29.87 Aligned_cols=47 Identities=17% Similarity=0.391 Sum_probs=26.4
Q ss_pred ceeEEEEecCC-CceeecCCC--CC-----------ceEEeCC---CCCC-cceEEEEEecCCcE
Q 025919 177 DVRAVSIKGSR-TDWQPMSRN--WG-----------QNWQSNS---YLNG-QSLSFKVTTSDGHT 223 (246)
Q Consensus 177 ~I~~Vev~~~~-~~w~~m~r~--~g-----------n~W~~~~---~~~g-~p~~vRiT~~~G~~ 223 (246)
+|.+|||..++ .+|++.+.. .. -.|++.- .+.| --+.+|-||.+|.+
T Consensus 42 ~I~rVEVS~DgG~tW~~A~l~~~~~~~~~g~~~~aW~~W~~~~~~~~~~G~~~i~~RA~D~~G~~ 106 (131)
T PF03404_consen 42 GIARVEVSTDGGKTWQEATLDGPESPPRYGEARWAWRLWEYDWPPPSLPGEYTIMVRATDESGNV 106 (131)
T ss_dssp -EEEEEEESSTTSSEEE-EEESTSCCCHHTS-TTS-EEEEEEEEECSHCCEEEEEEEEEETTS-B
T ss_pred ceEEEEEEeCCCCCcEEeEeccCCCcccccccCcccceeeeccCcCccccceEEEEEEeeccccc
Confidence 89999999886 569865532 21 1355432 1123 25666677777753
No 19
>cd02110 SO_family_Moco_dimer Subgroup of sulfite oxidase (SO) family molybdopterin binding domains that contains conserved dimerization domain. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO).
Probab=57.92 E-value=19 Score=33.14 Aligned_cols=49 Identities=22% Similarity=0.358 Sum_probs=31.2
Q ss_pred CcceeEEEEecCCC-ceeecCCCCC-------ceEEeCCCC-CC-cceEEEEEecCCcE
Q 025919 175 AGDVRAVSIKGSRT-DWQPMSRNWG-------QNWQSNSYL-NG-QSLSFKVTTSDGHT 223 (246)
Q Consensus 175 ~~~I~~Vev~~~~~-~w~~m~r~~g-------n~W~~~~~~-~g-~p~~vRiT~~~G~~ 223 (246)
...|++|||..+++ +|++..-... -.|++.-.+ .| --+.+|.+|.+|++
T Consensus 235 ~~~I~rVEvS~DgG~tW~~A~l~~~~~~~~~W~~W~~~~~~~~G~~~l~vRA~D~~g~~ 293 (317)
T cd02110 235 GRGIRRVEVSLDGGRTWQEARLEGPLAGPRAWRQWELDWDLPPGEYELVARATDSTGNV 293 (317)
T ss_pred CCCEEEEEEEeCCCCcceEeEccCCcCCCCEEEEEEEEEEcCCCcEEEEEEEECCCCCc
Confidence 36799999998875 8987654221 145554222 23 25777778888854
No 20
>PF10417 1-cysPrx_C: C-terminal domain of 1-Cys peroxiredoxin; InterPro: IPR019479 This entry represents the C-terminal domain of 1-Cys peroxiredoxin, a member of the peroxiredoxin superfamily which protect cells against membrane oxidation through glutathione (GSH)-dependent reduction of phospholipid hydroperoxides to corresponding alcohols []. The C-terminal domain is crucial for providing the extra cysteine necessary for dimerisation of the whole molecule. Loss of the enzyme's peroxidase activity is associated with oxidation of the catalytic cysteine found upstream of this domain. Glutathionylation, presumably through its disruption of protein structure, facilitates access for GSH, resulting in spontaneous reduction of the mixed disulphide to the sulphydryl and consequent activation of the enzyme []. The domain is associated with IPR000866 from INTERPRO, which carries the catalytic cysteine. ; GO: 0051920 peroxiredoxin activity, 0055114 oxidation-reduction process; PDB: 1ZOF_E 2H01_A 3EMP_D 1YF1_G 1YF0_D 1N8J_C 1YEP_D 1YEX_D 2V41_H 2V32_C ....
Probab=49.16 E-value=9.4 Score=24.35 Aligned_cols=12 Identities=33% Similarity=0.747 Sum_probs=10.0
Q ss_pred cccCCCCCCCeE
Q 025919 228 NVAPAGWSFGQT 239 (246)
Q Consensus 228 ~vip~~w~~G~~ 239 (246)
.+.|+||++|.-
T Consensus 10 v~tPanW~pGd~ 21 (40)
T PF10417_consen 10 VATPANWKPGDD 21 (40)
T ss_dssp SBBCTTTCTTSG
T ss_pred cccCcCCCCCCC
Confidence 488999999973
No 21
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=40.62 E-value=1.9e+02 Score=23.17 Aligned_cols=33 Identities=27% Similarity=0.443 Sum_probs=25.1
Q ss_pred ceEEEEc------CccceEEEEEEeeCCCcceeEEEEecC
Q 025919 153 GIRFTIN------GHSYFNLVLITNVGGAGDVRAVSIKGS 186 (246)
Q Consensus 153 ni~~~v~------~~~~~~~v~v~n~~G~~~I~~Vev~~~ 186 (246)
.+.+.+. +-+||.-+.+.|.+| ...++|+|.+.
T Consensus 35 ~l~v~~~~~~r~~~gqyyVpF~V~N~gg-~TAasV~V~ge 73 (122)
T TIGR02588 35 VLEVAPAEVERMQTGQYYVPFAIHNLGG-TTAAAVNIRGE 73 (122)
T ss_pred eEEEeehheeEEeCCEEEEEEEEEeCCC-cEEEEEEEEEE
Confidence 5655554 246999999999876 67899999853
No 22
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=38.36 E-value=17 Score=27.68 Aligned_cols=18 Identities=44% Similarity=0.639 Sum_probs=9.7
Q ss_pred hhHHHHHHHHHhhccccC
Q 025919 3 FLGLLLLGILSLVSSVYG 20 (246)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~ 20 (246)
||+|||+.+|.+.+-|++
T Consensus 8 lL~l~LA~lLlisSevaa 25 (95)
T PF07172_consen 8 LLGLLLAALLLISSEVAA 25 (95)
T ss_pred HHHHHHHHHHHHHhhhhh
Confidence 445555555555555554
No 23
>PLN00177 sulfite oxidase; Provisional
Probab=37.26 E-value=83 Score=30.03 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=17.8
Q ss_pred EeeCCCcceeEEEEecCC-CceeecC
Q 025919 170 TNVGGAGDVRAVSIKGSR-TDWQPMS 194 (246)
Q Consensus 170 ~n~~G~~~I~~Vev~~~~-~~w~~m~ 194 (246)
...+|...|++|||..++ .+|+..+
T Consensus 290 Awsggg~~I~rVEVS~DgG~tW~~A~ 315 (393)
T PLN00177 290 ALSGGGRGIERVDISVDGGKTWVEAS 315 (393)
T ss_pred EECCCCccEEEEEEEcCCCCCceeee
Confidence 344443479999999886 5798654
No 24
>PF08138 Sex_peptide: Sex peptide (SP) family; InterPro: IPR012608 This family consists of Sex Peptides (SP) that are found in Drosophila. On mating, Drosophila females decreases her remating rate and increases her egg-laying rate due, in part, to the transfer of SP from the male to the female. SP are found in seminal fluids transferred from the male to the female during mating. The male seminal fluid proteins are referred to as accessory gland proteins (Acps). The SP is one of the most interesting Acps and plays an important role in reproduction [].; GO: 0005179 hormone activity, 0046008 regulation of female receptivity, post-mating, 0005576 extracellular region; PDB: 2LAQ_A.
Probab=35.55 E-value=12 Score=25.56 Aligned_cols=12 Identities=42% Similarity=0.323 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHH
Q 025919 1 MAFLGLLLLGIL 12 (246)
Q Consensus 1 ~~~~~~~~~~~~ 12 (246)
|+++.+||+.++
T Consensus 1 Mk~p~~llllvl 12 (56)
T PF08138_consen 1 MKTPIFLLLLVL 12 (56)
T ss_dssp ------------
T ss_pred CcchHHHHHHHH
Confidence 788888877766
No 25
>cd02114 bact_SorA_Moco sulfite:cytochrome c oxidoreductase subunit A (SorA), molybdopterin binding domain. SorA is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SorB, a small c-type heme containing subunit, it forms a hetrodimer. It is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=33.73 E-value=96 Score=29.27 Aligned_cols=50 Identities=24% Similarity=0.579 Sum_probs=30.3
Q ss_pred CCcceeEEEEecCC-CceeecC--CCCCc----eEEeCC--CCCC-cceEEEEEecCCcE
Q 025919 174 GAGDVRAVSIKGSR-TDWQPMS--RNWGQ----NWQSNS--YLNG-QSLSFKVTTSDGHT 223 (246)
Q Consensus 174 G~~~I~~Vev~~~~-~~w~~m~--r~~gn----~W~~~~--~~~g-~p~~vRiT~~~G~~ 223 (246)
|...|++|||..++ .+|+..+ +..+. .|++.- ...| --+.+|-||.+|++
T Consensus 286 G~~~I~rVEVS~DgG~tW~~A~l~~~~~~~aW~~W~~~~~~~~~G~~~l~~RA~D~~G~~ 345 (367)
T cd02114 286 GGSGIRRVDVSADGGDSWTQATLGPDLGRFSFRGWKLTLDGVKKGPLTLMVRATNNDGQT 345 (367)
T ss_pred CCCCEEEEEEEeCCCCcceEeEeCCCCCCcEEEEEEEEEECCCCCcEEEEEEEEcCCCCC
Confidence 33679999999886 5798643 32222 355541 1133 25666778887753
No 26
>cd02113 bact_SoxC_Moco bacterial SoxC is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. SoxC is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SoxD, a small c-type heme containing subunit, it forms a hetrotetrameric sulfite dehydrogenase. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=32.96 E-value=67 Score=29.89 Aligned_cols=50 Identities=18% Similarity=0.244 Sum_probs=29.1
Q ss_pred CCcceeEEEEecCC-CceeecCCC--CC----ceEEeCC-CCCC-cceEEEEEecCCcE
Q 025919 174 GAGDVRAVSIKGSR-TDWQPMSRN--WG----QNWQSNS-YLNG-QSLSFKVTTSDGHT 223 (246)
Q Consensus 174 G~~~I~~Vev~~~~-~~w~~m~r~--~g----n~W~~~~-~~~g-~p~~vRiT~~~G~~ 223 (246)
|.+.|.+|||..++ .+|+..+.. .+ -.|+..- ...+ --+..|-||..|++
T Consensus 236 G~~~I~rVEVS~DgG~tW~~A~l~~~~~~~aW~~w~~~w~~~~g~~~i~~RA~D~~G~~ 294 (326)
T cd02113 236 GRGRIRRVDVSFDGGRTWQDARLEGPVLPKALTRFRLPWKWDGRPAVLQSRATDETGYV 294 (326)
T ss_pred CCCCEEEEEEEcCCCCCceECccCCCCCCCceEEEeEEEEcCCCeEEEEEEEEcCCCCC
Confidence 44679999999887 479865432 11 1233221 1222 25666778877753
No 27
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=32.60 E-value=1.5e+02 Score=21.74 Aligned_cols=34 Identities=24% Similarity=0.443 Sum_probs=19.9
Q ss_pred eecCCCC-CceEEeCC--CCCCcceEEEEEecCCcEE
Q 025919 191 QPMSRNW-GQNWQSNS--YLNGQSLSFKVTTSDGHTV 224 (246)
Q Consensus 191 ~~m~r~~-gn~W~~~~--~~~g~p~~vRiT~~~G~~v 224 (246)
.+|+|.. ...|.+.- ...+..+.+|++..+|++.
T Consensus 49 ~~m~~~~~~G~w~~~v~~~~~~~~Y~~~v~~~~g~~~ 85 (106)
T cd02855 49 HPMRRRGDSGVWELFIPGLGEGELYKYEILGADGHLP 85 (106)
T ss_pred eecEECCCCCEEEEEECCCCCCCEEEEEEECCCCCEE
Confidence 3677654 56787432 2223468889887555543
No 28
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=29.51 E-value=1.1e+02 Score=21.84 Aligned_cols=45 Identities=29% Similarity=0.477 Sum_probs=27.3
Q ss_pred eEEEEecCCCce--eecCCCCCceEEeCCCCCCcceEEEEEecCCcEE
Q 025919 179 RAVSIKGSRTDW--QPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTV 224 (246)
Q Consensus 179 ~~Vev~~~~~~w--~~m~r~~gn~W~~~~~~~g~p~~vRiT~~~G~~v 224 (246)
++|+|.++=..| .+|+|.....|++.-.+....+.+|+. .+|++.
T Consensus 14 ~~V~v~G~fn~W~~~~m~~~~~G~w~~~~~l~~G~y~Ykf~-vdg~~~ 60 (82)
T cd02861 14 DSVYLAGSFNNWNAIPMEREGDGLWVVTVELRPGRYEYKFV-VDGEWV 60 (82)
T ss_pred CEEEEEeECCCCCcccCEECCCCcEEEEEeCCCCcEEEEEE-ECCEEe
Confidence 678888764557 468887656888654443223455554 356665
No 29
>cd02111 eukary_SO_Moco molybdopterin binding domain of sulfite oxidase (SO). SO catalyzes the terminal reaction in the oxidative degradation of the sulfur-containing amino acids cysteine and methionine. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=29.51 E-value=1.4e+02 Score=28.16 Aligned_cols=54 Identities=13% Similarity=0.198 Sum_probs=31.0
Q ss_pred EeeCCCcceeEEEEecCC-CceeecCC--CCC----------ceEEeCCCC-C-C-cceEEEEEecCCcE
Q 025919 170 TNVGGAGDVRAVSIKGSR-TDWQPMSR--NWG----------QNWQSNSYL-N-G-QSLSFKVTTSDGHT 223 (246)
Q Consensus 170 ~n~~G~~~I~~Vev~~~~-~~w~~m~r--~~g----------n~W~~~~~~-~-g-~p~~vRiT~~~G~~ 223 (246)
...+|...|++|||..++ .+|+...- ..+ -.|++.-.+ . + --+.+|-||..|++
T Consensus 270 A~sgg~~~I~rVEVS~DgG~tW~~A~l~~~~~~~~~~~~~aW~~W~~~~~~~~~g~~~l~~RA~D~~G~~ 339 (365)
T cd02111 270 AWSGGGRKIVRVDVSLDGGRTWKVAELEQEENVWPSGRKWAWTLWEATVPVPAGKEAEIIAKAVDSAYNV 339 (365)
T ss_pred EECCCCCcEEEEEEECCCCCcceeCCcCCCCCccccCCCCEeEEEEEEEEeCCCCeEEEEEEEEcCCCCc
Confidence 344444579999999887 57986543 211 134443221 2 1 14666777777754
No 30
>PF15240 Pro-rich: Proline-rich
Probab=27.76 E-value=41 Score=28.74 Aligned_cols=16 Identities=38% Similarity=0.179 Sum_probs=10.2
Q ss_pred hHHHHHHHHHhhcccc
Q 025919 4 LGLLLLGILSLVSSVY 19 (246)
Q Consensus 4 ~~~~~~~~~~~~~~~~ 19 (246)
|.+||.+.|+++++|.
T Consensus 2 LlVLLSvALLALSSAQ 17 (179)
T PF15240_consen 2 LLVLLSVALLALSSAQ 17 (179)
T ss_pred hhHHHHHHHHHhhhcc
Confidence 5566666666666666
No 31
>PRK13701 psiB plasmid SOS inhibition protein B; Provisional
Probab=27.22 E-value=2.5e+02 Score=23.08 Aligned_cols=44 Identities=27% Similarity=0.546 Sum_probs=26.8
Q ss_pred CEEEEEEEEeecCCCCceEEEEc--C--ccceEEEEEEeeCCCcceeEEEEe
Q 025919 137 GIVPVSYRRVPCSRKGGIRFTIN--G--HSYFNLVLITNVGGAGDVRAVSIK 184 (246)
Q Consensus 137 G~i~i~w~~V~C~~~gni~~~v~--~--~~~~~~v~v~n~~G~~~I~~Vev~ 184 (246)
|-++|+-|+-| .-++..+.+= | +|+|+.+++. .+| .++.-|...
T Consensus 58 GffPVq~Rfsp--~~~~~~l~vCSpG~~sP~W~~Vl~~-~gG-~~~a~v~~~ 105 (144)
T PRK13701 58 GFFPVQVRFTP--AHERFHLALCSPGDVSPVWVLVLVN-AGG-EPFAVVQVQ 105 (144)
T ss_pred CeeeEEEEecC--CCCCeEEEEeCCCCCCcceEEEEEc-CCC-cEEEEEEec
Confidence 55666666666 2235555553 3 8999998884 454 566655554
No 32
>PF08770 SoxZ: Sulphur oxidation protein SoxZ; InterPro: IPR014880 SoxZ forms an anti parallel beta structure and forms a complex with SoxY. Sulphur oxidation occurs at the thiol of a conserved cysteine residue of the SoxY subunit []. ; PDB: 1V8H_B 2OX5_E 2OXG_E 2OXH_C.
Probab=26.74 E-value=1.3e+02 Score=22.97 Aligned_cols=53 Identities=21% Similarity=0.179 Sum_probs=26.7
Q ss_pred EEEEEeeCCCcceeEEEEecCCCceeecCCCCCceEEeCCCCCCcceEEEEEecCCcEEEEc
Q 025919 166 LVLITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSN 227 (246)
Q Consensus 166 ~v~v~n~~G~~~I~~Vev~~~~~~w~~m~r~~gn~W~~~~~~~g~p~~vRiT~~~G~~v~~~ 227 (246)
.+.+.+ +| .+|.++++..+ +..+-+=.|.+...-.| +|+++.+|++|+....+
T Consensus 45 ~v~v~~-ng-~~v~~~~~~~s------iS~NP~l~F~~~~~~~g-~l~v~~~Dn~G~~~~~~ 97 (100)
T PF08770_consen 45 EVEVTY-NG-KPVFRADWGPS------ISENPYLRFSFKGKKSG-TLTVTWTDNKGNSFSAE 97 (100)
T ss_dssp EEEEEE-TT-EEEEEEEE-TT------B-SS-EEEEEEEESSSE-EEEEEEEETTS-EEEEE
T ss_pred EEEEEE-CC-EEEEEEEeCCc------ccCCCcEEEEEecCCCc-EEEEEEEECCCCEEEEE
Confidence 344443 33 56666665543 22222223333333344 88888999998877654
No 33
>COG2372 CopC Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]
Probab=25.12 E-value=1.1e+02 Score=24.76 Aligned_cols=27 Identities=37% Similarity=0.669 Sum_probs=23.1
Q ss_pred cccCCEEEEEEEEeecCC---CCceEEEEc
Q 025919 133 QYKAGIVPVSYRRVPCSR---KGGIRFTIN 159 (246)
Q Consensus 133 ~~~~G~i~i~w~~V~C~~---~gni~~~v~ 159 (246)
++..|.+-++||.|+=+- +|.+.|.|+
T Consensus 96 ~L~aG~Y~v~WrvvS~DGH~v~G~~sFsV~ 125 (127)
T COG2372 96 PLKAGVYTVDWRVVSSDGHVVKGSISFSVG 125 (127)
T ss_pred cCCCCcEEEEEEEEecCCcEeccEEEEEec
Confidence 467999999999999873 678999886
No 34
>PF11912 DUF3430: Protein of unknown function (DUF3430); InterPro: IPR021837 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 209 to 265 amino acids in length.
Probab=24.96 E-value=64 Score=27.21 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=15.2
Q ss_pred ChhhHHHHHHHHHhhccccCCCc
Q 025919 1 MAFLGLLLLGILSLVSSVYGQGW 23 (246)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~ 23 (246)
||+|-+|++.++.+..-+...++
T Consensus 1 MKll~~lilli~~~~~~~~~~~y 23 (212)
T PF11912_consen 1 MKLLISLILLILLIINFSSSSQY 23 (212)
T ss_pred CcHHHHHHHHHHHHHhhhcCCcE
Confidence 99976666666666655555555
No 35
>PRK10301 hypothetical protein; Provisional
Probab=24.11 E-value=1.2e+02 Score=24.00 Aligned_cols=27 Identities=26% Similarity=0.486 Sum_probs=21.8
Q ss_pred cccCCEEEEEEEEeecC---CCCceEEEEc
Q 025919 133 QYKAGIVPVSYRRVPCS---RKGGIRFTIN 159 (246)
Q Consensus 133 ~~~~G~i~i~w~~V~C~---~~gni~~~v~ 159 (246)
.+..|.+.|+||-|+=+ ..|.++|.|+
T Consensus 95 ~L~~G~YtV~Wrvvs~DGH~~~G~~~F~V~ 124 (124)
T PRK10301 95 SLKPGTYTVDWHVVSVDGHKTKGHYTFSVK 124 (124)
T ss_pred CCCCccEEEEEEEEecCCCccCCeEEEEEC
Confidence 35789999999999976 3568888875
No 36
>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=23.87 E-value=53 Score=23.55 Aligned_cols=19 Identities=32% Similarity=0.319 Sum_probs=12.2
Q ss_pred ChhhHHHHHHHHHhhcccc
Q 025919 1 MAFLGLLLLGILSLVSSVY 19 (246)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (246)
|.=||+.||+.|.|+++.|
T Consensus 1 mnn~Si~VLlaLvLIg~fA 19 (71)
T PF04202_consen 1 MNNLSIAVLLALVLIGSFA 19 (71)
T ss_pred CCchhHHHHHHHHHHhhhe
Confidence 4556666666666666666
No 37
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=22.32 E-value=2.3e+02 Score=26.28 Aligned_cols=76 Identities=16% Similarity=0.246 Sum_probs=43.5
Q ss_pred EEEEEeecCCCCceEEEEc-CccceEEEEEEeeCCCcceeEEEEecCCCceeecCCCCCceEEeCCCCCCcceEEEEEe-
Q 025919 141 VSYRRVPCSRKGGIRFTIN-GHSYFNLVLITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTT- 218 (246)
Q Consensus 141 i~w~~V~C~~~gni~~~v~-~~~~~~~v~v~n~~G~~~I~~Vev~~~~~~w~~m~r~~gn~W~~~~~~~g~p~~vRiT~- 218 (246)
+.|..|+ .+..+.|.+. +++.+ ...+|.++|.+.+|-.+ .| +++|+|+|
T Consensus 48 l~wq~l~--~~~~~~~~L~~~sq~~-----~f~~~~s~vAAf~lPan---------------------~G-~l~i~LsS~ 98 (303)
T PRK10564 48 LTWQPVD--QSKTQTTQLATGGQQL-----NVAGISGPVAAYSLPAN---------------------IG-ELTLTLSSL 98 (303)
T ss_pred CCceEcc--CCCceEEEeCCCCcce-----ecCCCcccEEEEEcccc---------------------cc-cEEEEEEEE
Confidence 4576665 3346777777 45554 12233345544444332 22 78888888
Q ss_pred cCCcEEEEcc--ccCCCCCCCeEEeCCCC
Q 025919 219 SDGHTVVSNN--VAPAGWSFGQTFSGLQV 245 (246)
Q Consensus 219 ~~G~~v~~~~--vip~~w~~G~~y~~~q~ 245 (246)
...++|-+.+ |+=++|++=++|.+.+|
T Consensus 99 v~~~~VfaPnVlvLD~~~~~~~~y~s~~F 127 (303)
T PRK10564 99 VNDKSVFAPNVLVLDQNMRPAAFYPSSYF 127 (303)
T ss_pred ecCCcEEeceEEEEcCCCCEEEEecccce
Confidence 3333555554 55677888777777654
No 38
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=22.13 E-value=3e+02 Score=19.61 Aligned_cols=56 Identities=20% Similarity=0.313 Sum_probs=34.4
Q ss_pred EEEEeeCCCcceeEEEEecCCCcee---ecCCCCCceEEeCCCCCCcceEEEEEecCCcEEEEc
Q 025919 167 VLITNVGGAGDVRAVSIKGSRTDWQ---PMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSN 227 (246)
Q Consensus 167 v~v~n~~G~~~I~~Vev~~~~~~w~---~m~r~~gn~W~~~~~~~g~p~~vRiT~~~G~~v~~~ 227 (246)
+.|+..+ +-.+|+|.|+=..|. +|.|..+. |...-.|+...+.+|+.- +|+++...
T Consensus 4 v~f~~~~---~a~~V~v~G~F~~W~~~~pm~~~~~~-~~~~~~L~~g~y~YkF~V-dg~w~~d~ 62 (79)
T cd02859 4 TTFVWPG---GGKEVYVTGSFDNWKKKIPLEKSGKG-FSATLRLPPGKYQYKFIV-DGEWRHSP 62 (79)
T ss_pred EEEEEcC---CCcEEEEEEEcCCCCccccceECCCC-cEEEEEcCCCCEEEEEEE-CCEEEeCC
Confidence 4444443 357889988645575 58887655 776544442356666653 67887654
No 39
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=21.89 E-value=1e+02 Score=24.50 Aligned_cols=30 Identities=27% Similarity=0.376 Sum_probs=17.7
Q ss_pred cceEEEEEecCCc-EEEEccccCCCCCCCeE
Q 025919 210 QSLSFKVTTSDGH-TVVSNNVAPAGWSFGQT 239 (246)
Q Consensus 210 ~p~~vRiT~~~G~-~v~~~~vip~~w~~G~~ 239 (246)
..++|.|||...+ .|+.+.+.|.+++.|+.
T Consensus 71 ~~~~F~i~D~~~~i~V~Y~G~~Pd~F~eg~~ 101 (131)
T PF03100_consen 71 NTLTFTITDGGKEIPVVYTGPLPDLFREGQG 101 (131)
T ss_dssp SEEEEEEE-SS-EEEEEEES--CTT--TTSE
T ss_pred CEEEEEEEECCcEEEEEECCCCCccccCCCe
Confidence 4788999987543 45566899999988764
No 40
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=20.96 E-value=1.2e+02 Score=25.34 Aligned_cols=29 Identities=21% Similarity=0.287 Sum_probs=21.3
Q ss_pred ceEEEEEecCCc-EEEEccccCCCCCCCeE
Q 025919 211 SLSFKVTTSDGH-TVVSNNVAPAGWSFGQT 239 (246)
Q Consensus 211 p~~vRiT~~~G~-~v~~~~vip~~w~~G~~ 239 (246)
.++|+|||...+ .|..+.++|.-|+.|+-
T Consensus 73 ~v~F~vtD~~~~v~V~Y~GilPDlFrEGqg 102 (155)
T PRK13159 73 KVSFTVIDKNAATQVEYTGILPDLFRDNQS 102 (155)
T ss_pred EEEEEEEcCCcEEEEEEccCCCccccCCCe
Confidence 578888886554 45566899999988763
No 41
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=20.69 E-value=2.1e+02 Score=20.07 Aligned_cols=35 Identities=23% Similarity=0.448 Sum_probs=23.2
Q ss_pred eecC-CCCCceEEeCC--CCC-C-cceEEEEEecCCcEEE
Q 025919 191 QPMS-RNWGQNWQSNS--YLN-G-QSLSFKVTTSDGHTVV 225 (246)
Q Consensus 191 ~~m~-r~~gn~W~~~~--~~~-g-~p~~vRiT~~~G~~v~ 225 (246)
.+|+ +....+|++.- .+. | .-+.+||+..+|++..
T Consensus 40 ~~m~~~~~~G~w~~~~~~~~~~g~~~Y~y~i~~~~g~~~~ 79 (85)
T PF02922_consen 40 YPMTRKDDDGVWEVTVPGDLPPGGYYYKYRIDGDDGETPE 79 (85)
T ss_dssp EEEEEECTTTEEEEEEEGCGTTTT-EEEEEEEETTTEEEE
T ss_pred EEeeecCCCCEEEEEEcCCcCCCCEEEEEEEEeCCCcEEE
Confidence 4677 46677897642 344 3 3899999998875443
Done!