BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025920
(246 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N2Z|B Chain B, The Structure Of Human Prolylcarboxypeptidase At 2.80
Angstroms Resolution
Length = 446
Score = 157 bits (398), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 115/191 (60%), Gaps = 10/191 (5%)
Query: 53 EDFQTFYYNQTLDHFNYRPESYSTFQQRYVINFKYWXXXXXXXXXXPIFVYLGAEEALDG 112
+++ Y+ Q +DHF + + TF QRY++ KYW I Y G E +
Sbjct: 1 KNYSVLYFQQKVDHFGFN--TVKTFNQRYLVADKYWKKNGGS-----ILFYTGNEGDIIW 53
Query: 113 DISVIGFLTDNAARFNALLVYIEHRYYGKSIPFGSREEALKNASTLGYFNSAQAITDYAA 172
+ GF+ D A A+LV+ EHRYYG+S+PFG + + K++ L + S QA+ D+A
Sbjct: 54 FCNNTGFMWDVAEELKAMLVFAEHRYYGESLPFG--DNSFKDSRHLNFLTSEQALADFAE 111
Query: 173 ILLYIKEKY-NARHSPVIVVGGSYGGMLATWFRLKYPHVALGALASSAPILYFDDITPQN 231
++ ++K A + PVI +GGSYGGMLA WFR+KYPH+ +GALA+SAPI F+D+ P
Sbjct: 112 LIKHLKRTIPGAENQPVIAIGGSYGGMLAAWFRMKYPHMVVGALAASAPIWQFEDLVPCG 171
Query: 232 GYYSIVTRDFR 242
+ IVT DFR
Sbjct: 172 VFMKIVTTDFR 182
>pdb|3JYH|A Chain A, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|B Chain B, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|C Chain C, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|D Chain D, Human Dipeptidyl Peptidase Dpp7
pdb|3N0T|A Chain A, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|B Chain B, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|C Chain C, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|D Chain D, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
Length = 469
Score = 136 bits (343), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 107/191 (56%), Gaps = 16/191 (8%)
Query: 55 FQTFYYNQTLDHFNYRPESYSTFQQRYVINFKYWXXXXXXXXXXPIFVYLGAEEALDGDI 114
FQ ++ Q LDHFN+ TF QR++++ ++W PIF Y G E GD+
Sbjct: 8 FQERFFQQRLDHFNFERFGNKTFPQRFLVSDRFWVRGEG-----PIFFYTGNE----GDV 58
Query: 115 SVIG----FLTDNAARFNALLVYIEHRYYGKSIPFGSREEALKNASTLGYFNSAQAITDY 170
F+ + AA ALLV+ EHRYYGKS+PFG++ + L QA+ D+
Sbjct: 59 WAFANNSAFVAELAAERGALLVFAEHRYYGKSLPFGAQSTQRGHTELL---TVEQALADF 115
Query: 171 AAILLYIKEKYNARHSPVIVVGGSYGGMLATWFRLKYPHVALGALASSAPILYFDDITPQ 230
A +L ++ A+ +P I GGSYGGML+ + R+KYPH+ GALA+SAP+L +
Sbjct: 116 AELLRALRRDLGAQDAPAIAFGGSYGGMLSAYLRMKYPHLVAGALAASAPVLAVAGLGDS 175
Query: 231 NGYYSIVTRDF 241
N ++ VT DF
Sbjct: 176 NQFFRDVTADF 186
>pdb|4EBB|A Chain A, Structure Of Dpp2
pdb|4EBB|B Chain B, Structure Of Dpp2
Length = 472
Score = 132 bits (332), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/187 (37%), Positives = 104/187 (55%), Gaps = 8/187 (4%)
Query: 55 FQTFYYNQTLDHFNYRPESYSTFQQRYVINFKYWXXXXXXXXXXPIFVYLGAEEALDGDI 114
FQ ++ Q LDHFN+ TF QR++++ ++W PIF Y G E +
Sbjct: 5 FQERFFQQRLDHFNFERFGNKTFPQRFLVSDRFWVRGEG-----PIFFYTGNEGDVWAFA 59
Query: 115 SVIGFLTDNAARFNALLVYIEHRYYGKSIPFGSREEALKNASTLGYFNSAQAITDYAAIL 174
+ F+ + AA ALLV+ EHRYYGKS+PFG++ + L QA+ D+A +L
Sbjct: 60 NNSAFVAELAAERGALLVFAEHRYYGKSLPFGAQSTQRGHTELL---TVEQALADFAELL 116
Query: 175 LYIKEKYNARHSPVIVVGGSYGGMLATWFRLKYPHVALGALASSAPILYFDDITPQNGYY 234
++ A+ +P I GGSYGG L+ + R KYPH+ GALA+SAP+L + N ++
Sbjct: 117 RALRRDLGAQDAPAIAFGGSYGGXLSAYLRXKYPHLVAGALAASAPVLAVAGLGDSNQFF 176
Query: 235 SIVTRDF 241
VT DF
Sbjct: 177 RDVTADF 183
>pdb|2GAE|A Chain A, Crystal Structure Of Mlta From E. Coli
Length = 346
Score = 31.2 bits (69), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
Query: 6 ASFQWLLYIFTVISSLQVSAVRFKIP--RLSPTRGTILQNPEILSATISEDFQTFYYNQT 63
+ Q+ Y VI + F+ P R+ P RG + EI + +S+ + Y N
Sbjct: 95 GNVQFTGYYTPVIQARHTRQGEFQYPIYRMPPKRGRLPSRAEIYAGALSDKYILAYSNSL 154
Query: 64 LDHF--NYRPESYSTFQQRYVINF 85
+D+F + + Y F +NF
Sbjct: 155 MDNFIMDVQGSGYIDFGDGSPLNF 178
>pdb|2PIC|A Chain A, E. Coli Lytic Transglycosylase Mlta-D308a In Apo-2 Form
Length = 345
Score = 31.2 bits (69), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
Query: 6 ASFQWLLYIFTVISSLQVSAVRFKIP--RLSPTRGTILQNPEILSATISEDFQTFYYNQT 63
+ Q+ Y VI + F+ P R+ P RG + EI + +S+ + Y N
Sbjct: 94 GNVQFTGYYTPVIQARHTRQGEFQYPIYRMPPKRGRLSSRAEIYAGALSDKYILAYSNSL 153
Query: 64 LDHF--NYRPESYSTFQQRYVINF 85
+D+F + + Y F +NF
Sbjct: 154 MDNFIMDVQGSGYIDFGDGSPLNF 177
>pdb|2AE0|X Chain X, Crystal Structure Of Mlta From Escherichia Coli Reveals A
Unique Lytic Transglycosylase Fold
Length = 345
Score = 31.2 bits (69), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
Query: 6 ASFQWLLYIFTVISSLQVSAVRFKIP--RLSPTRGTILQNPEILSATISEDFQTFYYNQT 63
+ Q+ Y VI + F+ P R+ P RG + EI + +S+ + Y N
Sbjct: 94 GNVQFTGYYTPVIQARHTRQGEFQYPIYRMPPKRGRLSSRAEIYAGALSDKYILAYSNSL 153
Query: 64 LDHF--NYRPESYSTFQQRYVINF 85
+D+F + + Y F +NF
Sbjct: 154 MDNFIMDVQGSGYIDFGDGSPLNF 177
>pdb|2PJJ|A Chain A, E. Coli Lytic Transglycosylase Mlta-D308a In Apo-1 Form
Length = 345
Score = 31.2 bits (69), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
Query: 6 ASFQWLLYIFTVISSLQVSAVRFKIP--RLSPTRGTILQNPEILSATISEDFQTFYYNQT 63
+ Q+ Y VI + F+ P R+ P RG + EI + +S+ + Y N
Sbjct: 94 GNVQFTGYYTPVIQARHTRQGEFQYPIYRMPPKRGRLSSRAEIYAGALSDKYILAYSNSL 153
Query: 64 LDHF--NYRPESYSTFQQRYVINF 85
+D+F + + Y F +NF
Sbjct: 154 MDNFIMDVQGSGYIDFGDGSPLNF 177
>pdb|3DEV|A Chain A, Crystal Structure Of Sh1221 Protein From Staphylococcus
Haemolyticus, Northeast Structural Genomics Consortium
Target Shr87
pdb|3DEV|B Chain B, Crystal Structure Of Sh1221 Protein From Staphylococcus
Haemolyticus, Northeast Structural Genomics Consortium
Target Shr87
Length = 320
Score = 30.4 bits (67), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Query: 2 HSSIASFQWLLYIFTVISSLQVSAVRFKIPRLSPTRGTILQNPEILSATISEDFQTFYYN 61
H+ + Q L Y F + +++ K P+L P +G +LQN E+ + E Q N
Sbjct: 170 HTXEVASQLLAYPFN--HNAELNKXSEKDPKLXPFQGYVLQNFELSDS--HEYCQIKITN 225
Query: 62 QTLDHFNYRPESYSTF 77
L F+ +P S F
Sbjct: 226 DVLKQFDIQPNEASQF 241
>pdb|1TKI|A Chain A, Autoinhibited Serine Kinase Domain Of The Giant Muscle
Protein Titin
pdb|1TKI|B Chain B, Autoinhibited Serine Kinase Domain Of The Giant Muscle
Protein Titin
Length = 321
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 10/75 (13%)
Query: 1 MHSSIASFQWLLYIFTVISSLQVSAVRFKIPRLSPTRGTILQNPEILS--ATISEDFQTF 58
+H S S + L+ IF IS L + R++ T L EI+S + E Q F
Sbjct: 66 LHESFESMEELVMIFEFISGLDI------FERIN-TSAFELNEREIVSYVHQVCEALQ-F 117
Query: 59 YYNQTLDHFNYRPES 73
++ + HF+ RPE+
Sbjct: 118 LHSHNIGHFDIRPEN 132
>pdb|2PI8|A Chain A, Crystal Structure Of E. Coli Mlta With Bound Chitohexaose
pdb|2PI8|B Chain B, Crystal Structure Of E. Coli Mlta With Bound Chitohexaose
pdb|2PI8|C Chain C, Crystal Structure Of E. Coli Mlta With Bound Chitohexaose
pdb|2PI8|D Chain D, Crystal Structure Of E. Coli Mlta With Bound Chitohexaose
Length = 345
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 4/84 (4%)
Query: 6 ASFQWLLYIFTVISSLQVSAVRFKIP--RLSPTRGTILQNPEILSATISEDFQTFYYNQT 63
+ Q+ Y VI + F+ P R P RG + EI + +S+ + Y N
Sbjct: 94 GNVQFTGYYTPVIQARHTRQGEFQYPIYRXPPKRGRLSSRAEIYAGALSDKYILAYSNSL 153
Query: 64 LDHF--NYRPESYSTFQQRYVINF 85
D+F + + Y F +NF
Sbjct: 154 XDNFIXDVQGSGYIDFGDGSPLNF 177
>pdb|3NVQ|A Chain A, Molecular Mechanism Of Guidance Cue Recognition
pdb|3NVQ|E Chain E, Molecular Mechanism Of Guidance Cue Recognition
Length = 590
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 12/69 (17%)
Query: 17 VISSLQVSAVRFKIPRLSPTRG--------TILQNPEILSATISEDFQTF----YYNQTL 64
V S+++ KIPR RG T++QNP+ + ATI Q + YY
Sbjct: 143 VYSTIRKQEYNGKIPRFRRIRGESELYTSDTVMQNPQFIKATIVHQDQAYDDKIYYFFRE 202
Query: 65 DHFNYRPES 73
D+ + PE+
Sbjct: 203 DNPDKNPEA 211
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,961,495
Number of Sequences: 62578
Number of extensions: 269018
Number of successful extensions: 822
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 807
Number of HSP's gapped (non-prelim): 14
length of query: 246
length of database: 14,973,337
effective HSP length: 96
effective length of query: 150
effective length of database: 8,965,849
effective search space: 1344877350
effective search space used: 1344877350
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 50 (23.9 bits)