Query 025921
Match_columns 246
No_of_seqs 125 out of 135
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 11:04:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025921.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025921hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00995 3a0901s06TIC22 chlor 100.0 9.5E-61 2.1E-65 432.3 20.0 230 6-239 3-241 (270)
2 PF04278 Tic22: Tic22-like fam 100.0 5.1E-52 1.1E-56 377.5 17.1 228 13-243 3-252 (274)
3 PF04278 Tic22: Tic22-like fam 99.5 3.7E-14 8E-19 129.6 9.2 116 52-170 150-273 (274)
4 TIGR00995 3a0901s06TIC22 chlor 99.4 4.9E-13 1.1E-17 121.9 9.8 111 53-171 151-269 (270)
5 PF11360 DUF3110: Protein of u 93.9 0.55 1.2E-05 36.3 8.5 72 84-160 1-77 (86)
6 PF11042 DUF2750: Protein of u 82.7 8.8 0.00019 30.0 7.7 72 81-161 12-88 (104)
7 PF11572 DUF3234: Protein of u 80.5 7.5 0.00016 30.9 6.4 56 82-145 7-65 (103)
8 PF07179 SseB: SseB protein N- 67.5 49 0.0011 25.3 8.3 65 73-148 17-96 (124)
9 PF00578 AhpC-TSA: AhpC/TSA fa 66.0 13 0.00028 28.3 4.6 78 81-159 4-89 (124)
10 COG1225 Bcp Peroxiredoxin [Pos 59.2 32 0.0007 29.4 6.2 79 81-163 9-98 (157)
11 PF10882 bPH_5: Bacterial PH d 54.1 21 0.00045 27.0 3.9 38 84-126 62-99 (100)
12 PRK00522 tpx lipid hydroperoxi 53.3 45 0.00097 27.7 6.1 75 80-160 22-108 (167)
13 COG1999 Uncharacterized protei 52.4 62 0.0013 28.4 7.1 88 84-171 49-152 (207)
14 COG3691 Uncharacterized protei 50.9 40 0.00086 26.8 4.9 46 103-148 31-79 (98)
15 PF07179 SseB: SseB protein N- 49.8 20 0.00043 27.5 3.2 26 188-213 53-79 (124)
16 cd02970 PRX_like2 Peroxiredoxi 47.2 33 0.00071 26.8 4.2 76 82-161 2-89 (149)
17 PF02719 Polysacc_synt_2: Poly 45.3 35 0.00076 32.0 4.6 49 91-147 188-236 (293)
18 cd02971 PRX_family Peroxiredox 45.0 92 0.002 24.0 6.4 77 82-162 2-90 (140)
19 PF02630 SCO1-SenC: SCO1/SenC; 42.8 70 0.0015 27.0 5.7 87 80-169 30-133 (174)
20 PF11943 DUF3460: Protein of u 36.2 24 0.00052 25.7 1.6 19 113-131 4-22 (60)
21 cd06578 HemD Uroporphyrinogen- 35.5 2.2E+02 0.0049 23.7 7.8 65 107-171 52-116 (239)
22 PF07862 Nif11: Nitrogen fixat 34.1 16 0.00034 24.6 0.3 35 111-147 1-35 (49)
23 PF00837 T4_deiodinase: Iodoth 33.3 1.3E+02 0.0028 27.5 6.2 118 82-216 82-237 (237)
24 PRK09437 bcp thioredoxin-depen 32.5 1.4E+02 0.003 23.9 5.8 78 81-161 9-96 (154)
25 COG0027 PurT Formate-dependent 32.5 1.4E+02 0.003 29.0 6.4 146 75-234 29-198 (394)
26 PF09587 PGA_cap: Bacterial ca 32.5 67 0.0014 28.4 4.2 60 116-186 170-242 (250)
27 PF10787 YfmQ: Uncharacterised 30.6 1.1E+02 0.0023 26.2 4.8 34 92-125 92-125 (149)
28 PF07411 DUF1508: Domain of un 30.3 1.5E+02 0.0033 20.1 4.8 38 83-129 6-43 (49)
29 cd03017 PRX_BCP Peroxiredoxin 29.8 1.1E+02 0.0024 23.6 4.7 77 81-161 2-89 (140)
30 cd03018 PRX_AhpE_like Peroxire 29.7 1.9E+02 0.0042 22.5 6.1 77 81-160 6-93 (149)
31 COG1086 Predicted nucleoside-d 29.7 64 0.0014 33.2 3.9 74 89-185 434-507 (588)
32 PF07429 Glyco_transf_56: 4-al 29.5 66 0.0014 31.2 3.8 40 179-218 288-328 (360)
33 PRK09981 hypothetical protein; 28.7 82 0.0018 25.1 3.6 23 104-126 28-50 (99)
34 TIGR00743 conserved hypothetic 28.2 1.8E+02 0.0039 23.0 5.4 53 104-156 29-92 (95)
35 PRK11611 enhanced serine sensi 28.1 47 0.001 30.5 2.4 22 193-214 50-71 (246)
36 cd00837 EVH1 EVH1 (Enabled, Va 25.9 2E+02 0.0044 22.3 5.4 32 92-125 71-102 (104)
37 PF00568 WH1: WH1 domain; Int 25.6 1.9E+02 0.004 22.6 5.2 23 104-126 88-110 (111)
38 PF02829 3H: 3H domain; Inter 25.4 3.1E+02 0.0067 21.6 6.3 53 109-174 42-95 (98)
39 PF14483 Cut8_M: Cut8 dimerisa 25.2 36 0.00079 22.4 0.9 23 111-133 10-32 (38)
40 cd02968 SCO SCO (an acronym fo 24.4 93 0.002 24.1 3.3 79 82-161 2-95 (142)
41 PF11582 DUF3240: Protein of u 24.0 1.1E+02 0.0024 24.0 3.6 67 73-139 17-95 (102)
42 KOG3671 Actin regulatory prote 22.9 1.2E+02 0.0027 30.8 4.4 33 92-126 106-138 (569)
43 PF08534 Redoxin: Redoxin; In 22.5 2.2E+02 0.0048 22.2 5.2 76 81-159 5-92 (146)
44 cd02122 PA_GRAIL_like PA _GRAI 21.8 3.1E+02 0.0068 22.5 6.1 52 74-125 78-130 (138)
45 cd03016 PRX_1cys Peroxiredoxin 21.4 5.2E+02 0.011 22.1 12.1 129 81-218 4-156 (203)
46 cd03014 PRX_Atyp2cys Peroxired 21.1 1.9E+02 0.0042 22.6 4.6 74 81-160 5-90 (143)
47 PF03243 MerB: Alkylmercury ly 20.4 1.3E+02 0.0029 24.3 3.5 35 106-148 86-120 (127)
48 smart00461 WH1 WASP homology r 20.4 2.8E+02 0.0061 21.6 5.3 24 103-126 82-105 (106)
No 1
>TIGR00995 3a0901s06TIC22 chloroplast protein import component, Tic22 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein.
Probab=100.00 E-value=9.5e-61 Score=432.27 Aligned_cols=230 Identities=60% Similarity=0.846 Sum_probs=198.2
Q ss_pred CCCCCCCccchhhhhhhhhhhhhhcccCCccchhhhhhhcc--CCCCCC-CCCeeeeccch-hhhhccCChHHHHhhcCC
Q 025921 6 SQVLTNPLLSLSTFIHQNCLRLGSELSSRLDDTKRTLSRRL--QRPPLS-VPPFAFLSQPK-QALAATLSSDFVSKTLAG 81 (246)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~p~fa~v~~~~-~~~a~AL~~~eI~ekL~~ 81 (246)
++..+|||+++++||||||.|++++|++|+.+|++ +...| -++.++ .+..+..+... ..+|+|||++||+|+|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~mksL~r~~~~lgl~~~~~~~s~l~~~~~alAL~e~eV~ekL~~ 81 (270)
T TIGR00995 3 SSFRRNPFLSFSRFIKHKIFVKIKFLLSRLEETKR-TAKTLLRIGATLGTIPTFAIGTWLGTTLQALTLPPEEVAKILAG 81 (270)
T ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHhccchHhhhhhhhccccccccCCHHHHHHHhcC
Confidence 35589999999999999999999999999988877 33333 222233 22222223222 368999999999999999
Q ss_pred CcEEEEEcCCCCeEEEeCCCCCeeEEEEEecHHHHHHHHHHHHHhcccccCCceEEEEehhhHhhhhcCCeeEEEecCHH
Q 025921 82 TAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRLRRKELRSAAKVVPITLDQVYMLKVEGIAFRFLPDPA 161 (246)
Q Consensus 82 VPVF~Vtn~~g~plli~~~~g~~~v~~fFfs~eDAqa~L~qlk~~nP~la~~~kV~~V~L~~Vy~lk~~~~~f~fVP~~~ 161 (246)
||||+|+|++|+||++++++|.+.++.||++++||++||+++|++||++++++||++|+||+||+++.+++.|+|+|+++
T Consensus 82 VPVFtItn~~G~pvl~s~~~~~~~~gvf~s~qedA~afL~~lk~~~p~l~~~~kV~pvsL~~vYkl~~e~l~F~fiP~~~ 161 (270)
T TIGR00995 82 TSVFTVSNAQNEFVLASDNDGEKSIGLLCFRQEDAEAFLAQLRKRKPEVGSQAKVVPITLDQVYKLKVEGIGFRFLPDPA 161 (270)
T ss_pred CceEEEEcCCCCeEEEECCCCCceEEEEECCHHHHHHHHHHHHhhCccccCCceEEEEEHHHHHHHhhcCccEEEeCCHH
Confidence 99999999999999999998877788777777789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCCCCcEEeecceEEEeCCeEEEeeeecHHHHHHHHHHHhhhcCCCCCC--cceeechh---hhh
Q 025921 162 QIRNALELKAADVRTGFDGVPVFQSELLVVKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGVS--QHIMVEKH---LIT 236 (246)
Q Consensus 162 qVe~A~~L~~~~gq~~f~GVPVF~~~~Lti~~~~~~~iPlFF~KedL~~~l~k~~k~~~~P~~~--~~i~v~sl---~~~ 236 (246)
||++|++++ ++++++++|||||++++|||+++|++|||+||+||||+++|+++++++ |+++ .+|+|.+| +.+
T Consensus 162 qV~~A~~ll-~~~~~~~~GVPlF~~~~Lti~~~n~~~iP~FF~Kedlq~~L~~~kkq~--p~l~~~~~I~V~~Le~vi~~ 238 (270)
T TIGR00995 162 QIKNALELP-AANSEYFDGVPVFQSGLLVVQKKNERYCPVYFSKEDIEQELSKFKRES--PGMADSQVIMVGSMEDVLSK 238 (270)
T ss_pred HHHHHHHHH-hcCccCCCCccEEeecceEEEeCCeEEEeeEeeHHHHHHHHHHHhHhC--cCcCCCccEEEEeHHHHHHH
Confidence 999999999 456788999999999999999999999999999999999999999999 8887 56887654 556
Q ss_pred hhh
Q 025921 237 FIC 239 (246)
Q Consensus 237 ~~~ 239 (246)
|-.
T Consensus 239 m~~ 241 (270)
T TIGR00995 239 MET 241 (270)
T ss_pred Hhc
Confidence 654
No 2
>PF04278 Tic22: Tic22-like family; InterPro: IPR007378 Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accompished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex loacted at the inner membrane []. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. This entry represents Tic22, a core member of the Tic complex. It is believed to act as a link between both protein complexes, contacting the translocated protein in the intermembrane space after transport through the Toc complex, and directing it to the Tic complex [].; PDB: 4EV1_A.
Probab=100.00 E-value=5.1e-52 Score=377.49 Aligned_cols=228 Identities=43% Similarity=0.625 Sum_probs=131.8
Q ss_pred ccchhhhhhhhhhhhhhcccCCccchhhhhhhc-cCCCCCCCCCeeeeccchh---hhhccCChHHHHhhcCCCcEEEEE
Q 025921 13 LLSLSTFIHQNCLRLGSELSSRLDDTKRTLSRR-LQRPPLSVPPFAFLSQPKQ---ALAATLSSDFVSKTLAGTAVYTVS 88 (246)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~fa~v~~~~~---~~a~AL~~~eI~ekL~~VPVF~Vt 88 (246)
++++++++|+| .|+++++..++.++.+.-+.. +...|+..|.||..+.... .+++||++++|+|||++||||+|+
T Consensus 3 ~~~~~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~a~AL~~~~V~~kL~~VPVF~it 81 (274)
T PF04278_consen 3 LLSFSNFISNP-LRLGAELASRMKSLIRWSATLGLQGSLGLLPSTALGSSLGSSQPSSALALPEEEVEEKLAGVPVFTIT 81 (274)
T ss_dssp ---------------------------------------------------------------HHHHHHHHTTSEEEEEE
T ss_pred ccccccccccc-ccccccccccccccchhhhccccccccccCCchhcccccccccccccccCCHHHHHHHhcCceEEEEE
Confidence 67899999999 999999999998887744432 3445777888998887543 359999999999999999999999
Q ss_pred cCCCCeEEEeCCCC-CeeEEEEEecHHHHHHHHHHHHHhcccccCCceEEEEehhhHhhh------hcCCeeEEEecCHH
Q 025921 89 NSSNEFVLISDPNG-AKSIGLLCFRQEDAEAFLAQVRLRRKELRSAAKVVPITLDQVYML------KVEGIAFRFLPDPA 161 (246)
Q Consensus 89 n~~g~plli~~~~g-~~~v~~fFfs~eDAqa~L~qlk~~nP~la~~~kV~~V~L~~Vy~l------k~~~~~f~fVP~~~ 161 (246)
|++|+||+++++++ ++++++||||++||+++|++++++||++++++||.+|+||+||++ +.+++.|+|+|+++
T Consensus 82 n~~G~p~l~~~~~~~~~~v~~~F~s~~dA~~~L~~lk~~~p~~~~~~kV~pvsL~~vY~l~~~~~~k~~~~~F~~vP~~~ 161 (274)
T PF04278_consen 82 NSQGEPVLVSGPDQGGKSVGLFFFSQQDAEAFLAQLKKSNPELASGAKVVPVSLGKVYQLAQENKKKPEGLQFRFVPDPK 161 (274)
T ss_dssp -TT--B-----TTS--SEEEEEES-HHHHHHHHHHHHH-SSHHHTT-EEEEEEHHHHHHHHHHTTT-TT-EEEEEE--HH
T ss_pred CCCCCEEEeccCCCCCceEEEEEecHHHHHHHHHHHhhhCccccCceEEEEecHHHHHHHHHHhhcCCcCceEEEcCCHH
Confidence 99999999999983 689999999999999999999999999999999999999999999 56899999999999
Q ss_pred HHHHHHHHHhhccC--CCCCCCcEEeecc----eEEEeCCeEEEeeeecHHHHHHHHHHHhhhcCCCCCC--cceeechh
Q 025921 162 QIRNALELKAADVR--TGFDGVPVFQSEL----LVVKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGVS--QHIMVEKH 233 (246)
Q Consensus 162 qVe~A~~L~~~~gq--~~f~GVPVF~~~~----Lti~~~~~~~iPlFF~KedL~~~l~k~~k~~~~P~~~--~~i~v~sl 233 (246)
||++|+++++++|+ ++|+|||||++++ ||++++|++|+|+||+||||+++|+++++++ |+++ .+|+|.+|
T Consensus 162 qV~~A~~ll~~~g~~~~~f~GVPvF~~~~~~~~Lti~~~~~~~iPlFF~kedL~~~l~k~~kq~--p~~~~~~~I~V~~L 239 (274)
T PF04278_consen 162 QVEAALELLKKQGQKVKQFQGVPVFYAEGGKGYLTIKQDNKRIIPLFFDKEDLQAALEKAKKQQ--PDLAKEPKIQVVSL 239 (274)
T ss_dssp HHHHHHHHHHTTT---S---S-EEEEEESST-B-EETTTTEEEEEEESSHHHHHHHHHHHTTT---TT-----EEEEEEH
T ss_pred HHHHHHHHHHhcCCCcccCCCeEEEEEcCCCceEEEeeCCeEEEEEEecHHHHHHHHHHHHHhC--CCCcCCceEEEEcH
Confidence 99999999999888 5799999999888 9999999999999999999999999999999 7766 56888765
Q ss_pred ---hhhhhhcccc
Q 025921 234 ---LITFICSFEE 243 (246)
Q Consensus 234 ---~~~~~~~~~~ 243 (246)
+.+|..+.++
T Consensus 240 e~vI~~m~~~~d~ 252 (274)
T PF04278_consen 240 EDVIKTMEESDDS 252 (274)
T ss_dssp HHHHHHHHH---G
T ss_pred HHHHHHHhcCCCC
Confidence 4556655443
No 3
>PF04278 Tic22: Tic22-like family; InterPro: IPR007378 Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accompished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex loacted at the inner membrane []. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. This entry represents Tic22, a core member of the Tic complex. It is believed to act as a link between both protein complexes, contacting the translocated protein in the intermembrane space after transport through the Toc complex, and directing it to the Tic complex [].; PDB: 4EV1_A.
Probab=99.52 E-value=3.7e-14 Score=129.59 Aligned_cols=116 Identities=23% Similarity=0.337 Sum_probs=81.2
Q ss_pred CCCCeeeeccchh-hhhccCChH--HHHhhcCCCcEEEEEcCCCCeEEEeCCCCCeeEEEEEecHHHHHHHHHHHHHhcc
Q 025921 52 SVPPFAFLSQPKQ-ALAATLSSD--FVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRLRRK 128 (246)
Q Consensus 52 ~~p~fa~v~~~~~-~~a~AL~~~--eI~ekL~~VPVF~Vtn~~g~plli~~~~g~~~v~~fFfs~eDAqa~L~qlk~~nP 128 (246)
..-.|+++|.+++ ..|+.|..+ +-.+.+.|||||.+.+.+ .+|++. ++++.++|+||+++|+++.++++++++|
T Consensus 150 ~~~~F~~vP~~~qV~~A~~ll~~~g~~~~~f~GVPvF~~~~~~-~~Lti~--~~~~~~iPlFF~kedL~~~l~k~~kq~p 226 (274)
T PF04278_consen 150 EGLQFRFVPDPKQVEAALELLKKQGQKVKQFQGVPVFYAEGGK-GYLTIK--QDNKRIIPLFFDKEDLQAALEKAKKQQP 226 (274)
T ss_dssp T-EEEEEE--HHHHHHHHHHHHTTT---S---S-EEEEEESST--B-EET--TTTEEEEEEESSHHHHHHHHHHHTTT-T
T ss_pred cCceEEEcCCHHHHHHHHHHHHhcCCCcccCCCeEEEEEcCCC-ceEEEe--eCCeEEEEEEecHHHHHHHHHHHHHhCC
Confidence 3568999999887 777888333 444889999999999999 778774 3467899999999999999999999999
Q ss_pred cccCCceEEEEehhhHhhh--hc---CCeeEEEecCHHHHHHHHHHH
Q 025921 129 ELRSAAKVVPITLDQVYML--KV---EGIAFRFLPDPAQIRNALELK 170 (246)
Q Consensus 129 ~la~~~kV~~V~L~~Vy~l--k~---~~~~f~fVP~~~qVe~A~~L~ 170 (246)
+++.+.+|.+++|+.+++. .. +--.+.|||+.+.+++++++.
T Consensus 227 ~~~~~~~I~V~~Le~vI~~m~~~~d~~~~~i~fiP~~es~~~i~~~~ 273 (274)
T PF04278_consen 227 DLAKEPKIQVVSLEDVIKTMEESDDSDLKKIVFIPPGESLEFIQSLK 273 (274)
T ss_dssp T-----EEEEEEHHHHHHHHHH---GGGGGEEEE--HHHHHHHHTS-
T ss_pred CCcCCceEEEEcHHHHHHHHhcCCCCCcceEEEECCHHHHHHHHHhc
Confidence 9999999999999999987 22 346899999999999998753
No 4
>TIGR00995 3a0901s06TIC22 chloroplast protein import component, Tic22 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein.
Probab=99.43 E-value=4.9e-13 Score=121.89 Aligned_cols=111 Identities=18% Similarity=0.243 Sum_probs=93.8
Q ss_pred CCCeeeeccchh-hhhccCChHHHHhhcCCCcEEEEEcCCCCeEEEeCCCCCeeEEEEEecHHHHHHHHHHHHHhccccc
Q 025921 53 VPPFAFLSQPKQ-ALAATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRLRRKELR 131 (246)
Q Consensus 53 ~p~fa~v~~~~~-~~a~AL~~~eI~ekL~~VPVF~Vtn~~g~plli~~~~g~~~v~~fFfs~eDAqa~L~qlk~~nP~la 131 (246)
...|+++|.+++ ..|+.|.. .-.+...|||||.+ ++|++.. +++.++||||+++|++++|+++|+++|+++
T Consensus 151 ~l~F~fiP~~~qV~~A~~ll~-~~~~~~~GVPlF~~-----~~Lti~~--~n~~~iP~FF~Kedlq~~L~~~kkq~p~l~ 222 (270)
T TIGR00995 151 GIGFRFLPDPAQIKNALELPA-ANSEYFDGVPVFQS-----GLLVVQK--KNERYCPVYFSKEDIEQELSKFKRESPGMA 222 (270)
T ss_pred CccEEEeCCHHHHHHHHHHHh-cCccCCCCccEEee-----cceEEEe--CCeEEEeeEeeHHHHHHHHHHHhHhCcCcC
Confidence 389999999987 77777762 23455579999999 7788853 457899999999999999999999999999
Q ss_pred CCceEEEEehhhHhhh--h--cC---CeeEEEecCHHHHHHHHHHHh
Q 025921 132 SAAKVVPITLDQVYML--K--VE---GIAFRFLPDPAQIRNALELKA 171 (246)
Q Consensus 132 ~~~kV~~V~L~~Vy~l--k--~~---~~~f~fVP~~~qVe~A~~L~~ 171 (246)
.+.+|.+++|+.+++. . ++ .-.+.|+|+++.+++++++.+
T Consensus 223 ~~~~I~V~~Le~vi~~m~~~~~~~~~~~~I~l~Ps~e~~~~iq~~~~ 269 (270)
T TIGR00995 223 DSQVIMVGSMEDVLSKMETSEKDSGWEDQIFIPPGQEAIQHMQSLIA 269 (270)
T ss_pred CCccEEEEeHHHHHHHHhccCCCCcccceEEECCCHHHHHHHHHHhc
Confidence 9999999999999977 2 12 368889999999999998764
No 5
>PF11360 DUF3110: Protein of unknown function (DUF3110); InterPro: IPR021503 This family of proteins has no known function.
Probab=93.95 E-value=0.55 Score=36.32 Aligned_cols=72 Identities=15% Similarity=0.324 Sum_probs=55.6
Q ss_pred EEEEE----cCCCCeEEEeCCCCCeeEEEEEecHHHHHHHHHHHHHhcccccCCceEEEEehhhHhhh-hcCCeeEEEec
Q 025921 84 VYTVS----NSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRLRRKELRSAAKVVPITLDQVYML-KVEGIAFRFLP 158 (246)
Q Consensus 84 VF~Vt----n~~g~plli~~~~g~~~v~~fFfs~eDAqa~L~qlk~~nP~la~~~kV~~V~L~~Vy~l-k~~~~~f~fVP 158 (246)
||+++ ..+++...++..+ +.+.++|=+.+||+.+...|..++- ....|..+..+.+..+ ++.|..+++||
T Consensus 1 v~VL~f~~~~~~eGI~si~~~~--~~~Vl~FE~edDA~RYa~lLEAqd~---~~p~Ve~id~~~i~~fC~~~gy~~~iv~ 75 (86)
T PF11360_consen 1 VYVLLFNAGTETEGIYSIQNKD--RNVVLMFEDEDDAERYAGLLEAQDF---PDPTVEEIDPEEIEEFCRSAGYEYEIVP 75 (86)
T ss_pred CEEEEecCCCCCCcEEEEEeCC--CCEEEEEccHHHHHHHHHHHHhcCC---CCCCeEEECHHHHHHHHHHCCceEEEEC
Confidence 56676 2344666776554 5688999999999999999987642 2358999999999999 66789999998
Q ss_pred CH
Q 025921 159 DP 160 (246)
Q Consensus 159 ~~ 160 (246)
.-
T Consensus 76 ~g 77 (86)
T PF11360_consen 76 PG 77 (86)
T ss_pred CC
Confidence 64
No 6
>PF11042 DUF2750: Protein of unknown function (DUF2750); InterPro: IPR021284 This family is conserved in Proteobacteria. The function is not known.
Probab=82.65 E-value=8.8 Score=29.96 Aligned_cols=72 Identities=24% Similarity=0.367 Sum_probs=53.7
Q ss_pred CCcEEEEEcCCCCeEEEeCCCCCeeEEEEEecHHHHHHHHHHHHHhcccccCCceEEEEehhhHhh-----hhcCCeeEE
Q 025921 81 GTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRLRRKELRSAAKVVPITLDQVYM-----LKVEGIAFR 155 (246)
Q Consensus 81 ~VPVF~Vtn~~g~plli~~~~g~~~v~~fFfs~eDAqa~L~qlk~~nP~la~~~kV~~V~L~~Vy~-----lk~~~~~f~ 155 (246)
.==||++.+.+| .++....++. .+.+|+=+++.|++.... + .++.++..++|+.-.+ |.++++..-
T Consensus 12 ~e~vw~L~~~~g-~~~~~~~~~~-~~~p~W~~~~~A~~~~~~------e-w~~~~~~~I~L~~Fle~wl~~L~~d~~~vg 82 (104)
T PF11042_consen 12 SEEVWGLKDEDG-WVLCDSDEGE-DVLPFWPSKEFAEACATD------E-WADYKPKEISLDEFLEEWLPGLQEDGVLVG 82 (104)
T ss_pred CCEEEEEEcCCc-EEEeecCCCc-EEEEeCCCHHHHHHHHhc------c-cccCeEEEEEHHHHHHHHhHhHHHCCCEEE
Confidence 345899999999 7777666543 479999999999996654 1 4578999999998875 366776666
Q ss_pred EecCHH
Q 025921 156 FLPDPA 161 (246)
Q Consensus 156 fVP~~~ 161 (246)
+.|+..
T Consensus 83 v~~~~~ 88 (104)
T PF11042_consen 83 VFPNPD 88 (104)
T ss_pred EecCCC
Confidence 666543
No 7
>PF11572 DUF3234: Protein of unknown function (DUF3234); InterPro: IPR021628 This bacterial family of proteins has no known function. Some members in this family of proteins are annotated as TTHA0547 however this cannot be confirmed. ; PDB: 2Z0R_J.
Probab=80.51 E-value=7.5 Score=30.88 Aligned_cols=56 Identities=25% Similarity=0.478 Sum_probs=41.7
Q ss_pred CcEEEEEcCCCCeEEEeCCCCCeeEEEEEecHHHHHHHHHHHHHhcccccCCceEEEEe---hhhHh
Q 025921 82 TAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRLRRKELRSAAKVVPIT---LDQVY 145 (246)
Q Consensus 82 VPVF~Vtn~~g~plli~~~~g~~~v~~fFfs~eDAqa~L~qlk~~nP~la~~~kV~~V~---L~~Vy 145 (246)
-|=|++.|..|+-++...- | .....++.|.++|++|+++ +|++ +.+|.++- |.++|
T Consensus 7 g~WYVLe~~pGEHLvleal-g-qrls~iWtS~~~A~~F~~~----~p~~--GM~V~~Le~~aLKeaf 65 (103)
T PF11572_consen 7 GTWYVLEDEPGEHLVLEAL-G-QRLSGIWTSRELAQAFLAR----HPEL--GMRVSPLESWALKEAF 65 (103)
T ss_dssp SSEEEEESSTT-BEEEEET-T-EEEEEEBSSHHHHHHHHHT----STSS----EEEEE-SHHHHHHH
T ss_pred cceEEecCCCCceeeHHHH-h-hhHHhheecHHHHHHHHHh----Cccc--CcEeecchhHHHHHHH
Confidence 4779999999999998665 3 4588899999999999976 6873 68888874 55555
No 8
>PF07179 SseB: SseB protein N-terminal domain; InterPro: IPR009839 This family consists of several SseB proteins, which appear to be found exclusively in Enterobacteria. SseB is known to enhance serine-sensitivity in Escherichia coli [] and is part of the Salmonella pathogenicity island 2 (SPI-2) translocon [].
Probab=67.54 E-value=49 Score=25.25 Aligned_cols=65 Identities=12% Similarity=0.283 Sum_probs=45.8
Q ss_pred HHHHhhcCCCcEEEEEcCCCC---------------eEEEeCCCCCeeEEEEEecHHHHHHHHHHHHHhcccccCCceEE
Q 025921 73 DFVSKTLAGTAVYTVSNSSNE---------------FVLISDPNGAKSIGLLCFRQEDAEAFLAQVRLRRKELRSAAKVV 137 (246)
Q Consensus 73 ~eI~ekL~~VPVF~Vtn~~g~---------------plli~~~~g~~~v~~fFfs~eDAqa~L~qlk~~nP~la~~~kV~ 137 (246)
..+.+.|..--+|+.+...+. +.++..++|. ...++|.|.+...++.. ....+.
T Consensus 17 ~~~~~~L~~a~~lvpv~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~-~~lpvFTs~e~l~~~~~----------~~~~~~ 85 (124)
T PF07179_consen 17 EAFLEALLKAEVLVPVDVDDDDEGGEIEFDDDSEIQFLTLEDPDGE-RYLPVFTSWEELEKWYP----------DERPII 85 (124)
T ss_pred HHHHHHHhhCeEEEEEecccccccccccccCCCcceeEEEEcCCCC-EEEEEECCHHHHHhhhc----------ccCcee
Confidence 356666666666666544443 4777767764 59999999999988877 234577
Q ss_pred EEehhhHhhhh
Q 025921 138 PITLDQVYMLK 148 (246)
Q Consensus 138 ~V~L~~Vy~lk 148 (246)
.++...++++-
T Consensus 86 ~~~~~~l~~~~ 96 (124)
T PF07179_consen 86 VVPFEDLLEML 96 (124)
T ss_pred cccHHHHHHHh
Confidence 88888888773
No 9
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=65.97 E-value=13 Score=28.28 Aligned_cols=78 Identities=23% Similarity=0.330 Sum_probs=50.6
Q ss_pred CCcEEEEEcCCCCeEEEeCCCCCeeEEEEEecH---HHHHHHHHHHHHhccccc-CCceEEEEehhhHhhhh----cCCe
Q 025921 81 GTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQ---EDAEAFLAQVRLRRKELR-SAAKVVPITLDQVYMLK----VEGI 152 (246)
Q Consensus 81 ~VPVF~Vtn~~g~plli~~~~g~~~v~~fFfs~---eDAqa~L~qlk~~nP~la-~~~kV~~V~L~~Vy~lk----~~~~ 152 (246)
.+|-|.++|.+|..+..+.-.|. -+..+|++- ....+.+.++++...++. .+++|..|+.+...+++ ..++
T Consensus 4 ~~P~f~l~~~~g~~~~l~~l~gk-~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~ 82 (124)
T PF00578_consen 4 KAPDFTLTDSDGKTVSLSDLKGK-PVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGL 82 (124)
T ss_dssp BGGCEEEETTTSEEEEGGGGTTS-EEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTC
T ss_pred CCCCcEeECCCCCEEEHHHHCCC-cEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhcc
Confidence 47999999999998887766664 444455544 334444444444333332 47899999998887663 2456
Q ss_pred eEEEecC
Q 025921 153 AFRFLPD 159 (246)
Q Consensus 153 ~f~fVP~ 159 (246)
.|.++-|
T Consensus 83 ~~~~~~D 89 (124)
T PF00578_consen 83 PFPVLSD 89 (124)
T ss_dssp SSEEEEE
T ss_pred ccccccC
Confidence 6777766
No 10
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=59.16 E-value=32 Score=29.42 Aligned_cols=79 Identities=22% Similarity=0.265 Sum_probs=59.7
Q ss_pred CCcEEEEEcCCCCeEEEeCCCCCeeEEEEEe-------cHHHHHHHHHHHHHhcccccCCceEEEEehhhHhhhh----c
Q 025921 81 GTAVYTVSNSSNEFVLISDPNGAKSIGLLCF-------RQEDAEAFLAQVRLRRKELRSAAKVVPITLDQVYMLK----V 149 (246)
Q Consensus 81 ~VPVF~Vtn~~g~plli~~~~g~~~v~~fFf-------s~eDAqa~L~qlk~~nP~la~~~kV~~V~L~~Vy~lk----~ 149 (246)
..|=|.+.|.+|+.+..++-.|. .|.+.|+ +-.+|.+|=+.+.+-+ ..++.|.-||-|.+.+++ +
T Consensus 9 ~aPdF~Lp~~~g~~v~Lsd~~Gk-~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~---~~~a~V~GIS~Ds~~~~~~F~~k 84 (157)
T COG1225 9 KAPDFELPDQDGETVSLSDLRGK-PVVLYFYPKDFTPGCTTEACDFRDLLEEFE---KLGAVVLGISPDSPKSHKKFAEK 84 (157)
T ss_pred cCCCeEeecCCCCEEehHHhcCC-cEEEEECCCCCCCcchHHHHHHHHHHHHHH---hCCCEEEEEeCCCHHHHHHHHHH
Confidence 47999999999999888877775 4655554 4457777766654422 137899999999999994 4
Q ss_pred CCeeEEEecCHHHH
Q 025921 150 EGIAFRFLPDPAQI 163 (246)
Q Consensus 150 ~~~~f~fVP~~~qV 163 (246)
.++.|.++.|...-
T Consensus 85 ~~L~f~LLSD~~~~ 98 (157)
T COG1225 85 HGLTFPLLSDEDGE 98 (157)
T ss_pred hCCCceeeECCcHH
Confidence 68999999998543
No 11
>PF10882 bPH_5: Bacterial PH domain; InterPro: IPR020482 This entry contains membrane proteins with no known function.
Probab=54.10 E-value=21 Score=27.03 Aligned_cols=38 Identities=21% Similarity=0.380 Sum_probs=27.9
Q ss_pred EEEEEcCCCCeEEEeCCCCCeeEEEEEecHHHHHHHHHHHHHh
Q 025921 84 VYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRLR 126 (246)
Q Consensus 84 VF~Vtn~~g~plli~~~~g~~~v~~fFfs~eDAqa~L~qlk~~ 126 (246)
+++.++.....+++...++ ...++.+|.+.|+++++++
T Consensus 62 ~~~y~t~~~~~i~I~t~~~-----~y~isp~~~~~fi~~l~~r 99 (100)
T PF10882_consen 62 VRLYATRNKNVILIKTKDK-----TYVISPEDPEEFIEALKKR 99 (100)
T ss_pred EEEEEECCCCEEEEEECCc-----eEEEcCCCHHHHHHHHHhc
Confidence 4444444677777876652 2568999999999999875
No 12
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=53.31 E-value=45 Score=27.74 Aligned_cols=75 Identities=23% Similarity=0.213 Sum_probs=48.4
Q ss_pred CCCcEEEEEcCCCCeEEEeCCCCCeeEEEEEe-------cHHHHHHHHHHHHHhcccccCCceEEEEehhhHhhhh----
Q 025921 80 AGTAVYTVSNSSNEFVLISDPNGAKSIGLLCF-------RQEDAEAFLAQVRLRRKELRSAAKVVPITLDQVYMLK---- 148 (246)
Q Consensus 80 ~~VPVF~Vtn~~g~plli~~~~g~~~v~~fFf-------s~eDAqa~L~qlk~~nP~la~~~kV~~V~L~~Vy~lk---- 148 (246)
...|-|++.|.+|..+..+.-.|.. +...|+ +..++-++-+ +.+ +. .+++|..|+.|..+.++
T Consensus 22 ~~~P~f~l~~~~g~~v~l~~~~Gk~-vvl~f~~s~~cp~C~~e~~~l~~-~~~---~~-~~~~vv~vs~D~~~~~~~f~~ 95 (167)
T PRK00522 22 DKAPDFTLVANDLSDVSLADFAGKR-KVLNIFPSIDTGVCATSVRKFNQ-EAA---EL-DNTVVLCISADLPFAQKRFCG 95 (167)
T ss_pred CCCCCeEEEcCCCcEEehHHhCCCE-EEEEEEcCCCCCccHHHHHHHHH-HHH---Hc-CCcEEEEEeCCCHHHHHHHHH
Confidence 4579999999999887776655543 333443 4455444433 333 22 37899999999887663
Q ss_pred cCCee-EEEecCH
Q 025921 149 VEGIA-FRFLPDP 160 (246)
Q Consensus 149 ~~~~~-f~fVP~~ 160 (246)
..++. |.++-|.
T Consensus 96 ~~~~~~~~~lsD~ 108 (167)
T PRK00522 96 AEGLENVITLSDF 108 (167)
T ss_pred hCCCCCceEeecC
Confidence 24554 7888874
No 13
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=52.38 E-value=62 Score=28.39 Aligned_cols=88 Identities=14% Similarity=0.128 Sum_probs=51.5
Q ss_pred EEEEEcCCCCeEEEeCCCCCeeEEEEEe------cHHHHHHHHHHHHHhcccccCCceEEEEehhhHhhh-------hc-
Q 025921 84 VYTVSNSSNEFVLISDPNGAKSIGLLCF------RQEDAEAFLAQVRLRRKELRSAAKVVPITLDQVYML-------KV- 149 (246)
Q Consensus 84 VF~Vtn~~g~plli~~~~g~~~v~~fFf------s~eDAqa~L~qlk~~nP~la~~~kV~~V~L~~Vy~l-------k~- 149 (246)
-|.++|++|+++.-..-.|.-.+..|.| ++..-..+.+-+++-....+.+++|+.|++|=-.-. ..
T Consensus 49 ~f~l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~ 128 (207)
T COG1999 49 DFELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAEL 128 (207)
T ss_pred ceeeecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcc
Confidence 5899999999998877777544444443 444444344444443324466788999998644322 11
Q ss_pred -CCeeE-EEecCHHHHHHHHHHHh
Q 025921 150 -EGIAF-RFLPDPAQIRNALELKA 171 (246)
Q Consensus 150 -~~~~f-~fVP~~~qVe~A~~L~~ 171 (246)
-...| -+-.+.++++.+.+-..
T Consensus 129 ~~~~~~~~ltg~~~~~~~~~k~~~ 152 (207)
T COG1999 129 NFDPRWIGLTGTPEQIEEVAKAYG 152 (207)
T ss_pred cCCCCeeeeeCCHHHHHHHHHHhc
Confidence 11222 24445777777665543
No 14
>COG3691 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.92 E-value=40 Score=26.85 Aligned_cols=46 Identities=13% Similarity=0.121 Sum_probs=31.1
Q ss_pred CeeEEEEEecHHHHHHHHHHHHHhcccccC---CceEEEEehhhHhhhh
Q 025921 103 AKSIGLLCFRQEDAEAFLAQVRLRRKELRS---AAKVVPITLDQVYMLK 148 (246)
Q Consensus 103 ~~~v~~fFfs~eDAqa~L~qlk~~nP~la~---~~kV~~V~L~~Vy~lk 148 (246)
...+-.||=++.+|+++|+.+.+.-...-+ +++-...++++-++|+
T Consensus 31 t~~~s~~~as~a~ae~~La~lt~kAr~veSepc~I~~ei~~vedgv~L~ 79 (98)
T COG3691 31 TAEYSRFFATRAEAEEALAALTEKARAVESEPCEIEYEITDVEDGVELD 79 (98)
T ss_pred eEEEEEEecCHHHHHHHHHHHHHHHHhhccCcceeeeeeEeccCcEEEc
Confidence 356888999999999999999875433223 3444445555666663
No 15
>PF07179 SseB: SseB protein N-terminal domain; InterPro: IPR009839 This family consists of several SseB proteins, which appear to be found exclusively in Enterobacteria. SseB is known to enhance serine-sensitivity in Escherichia coli [] and is part of the Salmonella pathogenicity island 2 (SPI-2) translocon [].
Probab=49.80 E-value=20 Score=27.52 Aligned_cols=26 Identities=31% Similarity=0.566 Sum_probs=21.6
Q ss_pred ceEEE-eCCeEEEeeeecHHHHHHHHH
Q 025921 188 LLVVK-KKNKRYCPVYFQKEDIEKELS 213 (246)
Q Consensus 188 ~Lti~-~~~~~~iPlFF~KedL~~~l~ 213 (246)
..+++ .+|++++|+|-+.+.+.+...
T Consensus 53 ~~~~~~~dg~~~lpvFTs~e~l~~~~~ 79 (124)
T PF07179_consen 53 FLTLEDPDGERYLPVFTSWEELEKWYP 79 (124)
T ss_pred eEEEEcCCCCEEEEEECCHHHHHhhhc
Confidence 34554 788999999999999998877
No 16
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=47.20 E-value=33 Score=26.80 Aligned_cols=76 Identities=18% Similarity=0.264 Sum_probs=45.0
Q ss_pred CcEEEEEcCCCCeEEEeCCCCCeeEEEEEe-------cHHHHHHHHHHHHHhcccc-cCCceEEEEehhhHhhh----hc
Q 025921 82 TAVYTVSNSSNEFVLISDPNGAKSIGLLCF-------RQEDAEAFLAQVRLRRKEL-RSAAKVVPITLDQVYML----KV 149 (246)
Q Consensus 82 VPVF~Vtn~~g~plli~~~~g~~~v~~fFf-------s~eDAqa~L~qlk~~nP~l-a~~~kV~~V~L~~Vy~l----k~ 149 (246)
.|-|++.+.+|..+..+.-.+.+.+..+|+ +++++..+ +++.. ++ ..+++|..|+.+....+ +.
T Consensus 2 ~p~f~l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l-~~~~~---~~~~~~v~vv~V~~~~~~~~~~~~~~ 77 (149)
T cd02970 2 APDFELPDAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRAL-SKLLP---ELDALGVELVAVGPESPEKLEAFDKG 77 (149)
T ss_pred CCCccccCCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHH-HHHHH---HHHhcCeEEEEEeCCCHHHHHHHHHh
Confidence 588999999998887654322233444554 34443332 22222 32 24688999998776655 23
Q ss_pred CCeeEEEecCHH
Q 025921 150 EGIAFRFLPDPA 161 (246)
Q Consensus 150 ~~~~f~fVP~~~ 161 (246)
.++.|.++-|+.
T Consensus 78 ~~~~~p~~~D~~ 89 (149)
T cd02970 78 KFLPFPVYADPD 89 (149)
T ss_pred cCCCCeEEECCc
Confidence 466777777653
No 17
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=45.31 E-value=35 Score=32.00 Aligned_cols=49 Identities=10% Similarity=0.228 Sum_probs=30.0
Q ss_pred CCCeEEEeCCCCCeeEEEEEecHHHHHHHHHHHHHhcccccCCceEEEEehhhHhhh
Q 025921 91 SNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRLRRKELRSAAKVVPITLDQVYML 147 (246)
Q Consensus 91 ~g~plli~~~~g~~~v~~fFfs~eDAqa~L~qlk~~nP~la~~~kV~~V~L~~Vy~l 147 (246)
+|.||++++++ +..|||+.+||-.++-+--.. +.+..|.+..||+.+++
T Consensus 188 ~g~PlTvT~p~----mtRffmti~EAv~Lvl~a~~~----~~~geifvl~mg~~v~I 236 (293)
T PF02719_consen 188 NGGPLTVTDPD----MTRFFMTIEEAVQLVLQAAAL----AKGGEIFVLDMGEPVKI 236 (293)
T ss_dssp TTSSEEECETT-----EEEEE-HHHHHHHHHHHHHH------TTEEEEE---TCEEC
T ss_pred cCCcceeCCCC----cEEEEecHHHHHHHHHHHHhh----CCCCcEEEecCCCCcCH
Confidence 46788887764 788999999999988775542 34566766666555443
No 18
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=44.98 E-value=92 Score=24.04 Aligned_cols=77 Identities=23% Similarity=0.353 Sum_probs=47.2
Q ss_pred CcEEEEEcCCCCeEEEeCCCCCeeEEEEEe-------cHHHHHHHHHHHHHhcccccCCceEEEEehhhHhhhh----cC
Q 025921 82 TAVYTVSNSSNEFVLISDPNGAKSIGLLCF-------RQEDAEAFLAQVRLRRKELRSAAKVVPITLDQVYMLK----VE 150 (246)
Q Consensus 82 VPVF~Vtn~~g~plli~~~~g~~~v~~fFf-------s~eDAqa~L~qlk~~nP~la~~~kV~~V~L~~Vy~lk----~~ 150 (246)
+|-|.+.|.+|..+..+.-.|.. +..+|+ +..++..+.+...+-+ ..++.|..|+.+..-.++ ..
T Consensus 2 ~p~f~l~~~~g~~~~l~~~~gk~-~ll~f~~~~~c~~C~~~~~~l~~~~~~~~---~~~~~~i~is~d~~~~~~~~~~~~ 77 (140)
T cd02971 2 APDFTLPATDGGEVSLSDFKGKW-VVLFFYPKDFTPVCTTELCAFRDLAEEFA---KGGAEVLGVSVDSPFSHKAWAEKE 77 (140)
T ss_pred CCCceeccCCCcEEehHHhCCCe-EEEEEeCCCCCCcCHHHHHHHHHHHHHHH---HCCCEEEEEeCCCHHHHHHHHhcc
Confidence 57889999999988876644443 444444 3444333332222211 246889999998665542 23
Q ss_pred -CeeEEEecCHHH
Q 025921 151 -GIAFRFLPDPAQ 162 (246)
Q Consensus 151 -~~~f~fVP~~~q 162 (246)
+..|.++-|...
T Consensus 78 ~~~~~~~l~D~~~ 90 (140)
T cd02971 78 GGLNFPLLSDPDG 90 (140)
T ss_pred cCCCceEEECCCh
Confidence 677888887654
No 19
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=42.81 E-value=70 Score=26.97 Aligned_cols=87 Identities=15% Similarity=0.147 Sum_probs=46.3
Q ss_pred CCCcEEEEEcCCCCeEEEeCCCCCeeEEEEEe------cHHHHHHHHHHHHHhcccccCCceEEEEehhhHhhh----h-
Q 025921 80 AGTAVYTVSNSSNEFVLISDPNGAKSIGLLCF------RQEDAEAFLAQVRLRRKELRSAAKVVPITLDQVYML----K- 148 (246)
Q Consensus 80 ~~VPVF~Vtn~~g~plli~~~~g~~~v~~fFf------s~eDAqa~L~qlk~~nP~la~~~kV~~V~L~~Vy~l----k- 148 (246)
..+|-|.++|.+|..+....-+|.-.+..|++ ++.-... +.++.++=.+-+.++++.-|++|=-+-. +
T Consensus 30 ~~~~~f~L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~-l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~L~~ 108 (174)
T PF02630_consen 30 RIVPDFTLTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLAN-LSQLQKQLGEEGKDVQFVFISVDPERDTPEVLKK 108 (174)
T ss_dssp CSSST-EEEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHH-HHHHHHHHHHTTTTEEEEEEESSTTTC-HHHHHH
T ss_pred ccCCCcEEEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHH-HHHHHHHhhhccCceEEEEEEeCCCCCCHHHHHH
Confidence 45778999999999998765566544443333 2222222 2222221111145788999998644322 1
Q ss_pred ------cCCeeEEEecCHHHHHHHHHH
Q 025921 149 ------VEGIAFRFLPDPAQIRNALEL 169 (246)
Q Consensus 149 ------~~~~~f~fVP~~~qVe~A~~L 169 (246)
.+-..+. .+.++++.+.+.
T Consensus 109 Y~~~~~~~~~~lt--g~~~~i~~l~~~ 133 (174)
T PF02630_consen 109 YAKKFGPDFIGLT--GSREEIEELAKQ 133 (174)
T ss_dssp HHHCHTTTCEEEE--EEHHHHHHHHHH
T ss_pred HHHhcCCCcceeE--eCHHHHHHHHHH
Confidence 1233433 466677765554
No 20
>PF11943 DUF3460: Protein of unknown function (DUF3460); InterPro: IPR021853 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 70 amino acids in length. This protein has a conserved WDK sequence motif.
Probab=36.25 E-value=24 Score=25.74 Aligned_cols=19 Identities=32% Similarity=0.560 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHhccccc
Q 025921 113 QEDAEAFLAQVRLRRKELR 131 (246)
Q Consensus 113 ~eDAqa~L~qlk~~nP~la 131 (246)
+.|+..||+++|.+||++.
T Consensus 4 ~Se~TqFl~~lk~~~Pele 22 (60)
T PF11943_consen 4 QSEITQFLNQLKAKHPELE 22 (60)
T ss_pred cCHHHHHHHHHHHhCCchH
Confidence 5689999999999999853
No 21
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=35.54 E-value=2.2e+02 Score=23.73 Aligned_cols=65 Identities=18% Similarity=0.255 Sum_probs=46.7
Q ss_pred EEEEecHHHHHHHHHHHHHhcccccCCceEEEEehhhHhhhhcCCeeEEEecCHHHHHHHHHHHh
Q 025921 107 GLLCFRQEDAEAFLAQVRLRRKELRSAAKVVPITLDQVYMLKVEGIAFRFLPDPAQIRNALELKA 171 (246)
Q Consensus 107 ~~fFfs~eDAqa~L~qlk~~nP~la~~~kV~~V~L~~Vy~lk~~~~~f~fVP~~~qVe~A~~L~~ 171 (246)
..+|+|+.-++.+.+.++..++....+.++.+|+=..+-.++..|..-.++|+....+...+++.
T Consensus 52 ~iiftS~~av~~~~~~~~~~~~~~~~~~~~~avG~~Ta~~l~~~g~~~~~~~~~~~~~~L~~~i~ 116 (239)
T cd06578 52 WLIFTSPNAVEAFFEALEELGLRALAGLKIAAVGPKTAEALREAGLTADFVPEEGDSEGLLELLE 116 (239)
T ss_pred EEEEECHHHHHHHHHHHHhhCCccccCCEEEEECHHHHHHHHHcCCCceeCCCccCHHHHHHHHH
Confidence 45899999999999999876555556788888877777667766666666666555555444443
No 22
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=34.06 E-value=16 Score=24.61 Aligned_cols=35 Identities=31% Similarity=0.393 Sum_probs=24.4
Q ss_pred ecHHHHHHHHHHHHHhcccccCCceEEEEehhhHhhh
Q 025921 111 FRQEDAEAFLAQVRLRRKELRSAAKVVPITLDQVYML 147 (246)
Q Consensus 111 fs~eDAqa~L~qlk~~nP~la~~~kV~~V~L~~Vy~l 147 (246)
||.+++++|++.++ .+|+++.+++- +-+.+.+..+
T Consensus 1 MS~~~l~~Fl~~~~-~d~~l~~~l~~-~~~~~e~~~l 35 (49)
T PF07862_consen 1 MSIESLKAFLEKVK-SDPELREQLKA-CQNPEEVVAL 35 (49)
T ss_pred CCHHHHHHHHHHHh-cCHHHHHHHHh-cCCHHHHHHH
Confidence 78999999999995 56787765433 1155555555
No 23
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=33.30 E-value=1.3e+02 Score=27.52 Aligned_cols=118 Identities=18% Similarity=0.233 Sum_probs=68.3
Q ss_pred CcEEEEEcCC----------CCeEEEeCCCCCeeEEEEEecHHHHHHHHHHHHHhcccccCCceEEEEehhhHhhh----
Q 025921 82 TAVYTVSNSS----------NEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRLRRKELRSAAKVVPITLDQVYML---- 147 (246)
Q Consensus 82 VPVF~Vtn~~----------g~plli~~~~g~~~v~~fFfs~eDAqa~L~qlk~~nP~la~~~kV~~V~L~~Vy~l---- 147 (246)
.||.++.+.. |.||+++= |. -.+|.|+++-++= +++-.+..+ -++-..|=+.+|.--
T Consensus 82 s~vv~l~g~~~~~ildf~~g~RPLVlnF--GS-~TCPpF~~~l~~f---~~l~~~f~d---~adFl~VYI~EAHpsDgW~ 152 (237)
T PF00837_consen 82 SPVVTLDGQRSCRILDFAKGNRPLVLNF--GS-CTCPPFMAKLDAF---KRLVEDFSD---VADFLIVYIEEAHPSDGWA 152 (237)
T ss_pred CceEeeCCCcceeHHHhccCCCCeEEEc--cc-ccchHHHHHHHHH---HHHHHHhhh---hhheehhhHhhhCcCCCcc
Confidence 5566665554 57777744 32 3578898876543 233333332 244455545554432
Q ss_pred -hcCCeeEEEecCHHH----HHHHHHHHhhccCCCCCCCcEEe--------------ecceEEEeCCeEE-----Eeeee
Q 025921 148 -KVEGIAFRFLPDPAQ----IRNALELKAADVRTGFDGVPVFQ--------------SELLVVKKKNKRY-----CPVYF 203 (246)
Q Consensus 148 -k~~~~~f~fVP~~~q----Ve~A~~L~~~~gq~~f~GVPVF~--------------~~~Lti~~~~~~~-----iPlFF 203 (246)
..+. +. ||..+. +.+|+.|++. ..+.||++ -+-|.|=++|+-+ -|+.|
T Consensus 153 ~~~~~--~~-i~qh~sledR~~aA~~l~~~-----~~~~pi~vD~mdN~~~~~YgA~PeRlyIi~~gkv~Y~Gg~GP~~y 224 (237)
T PF00837_consen 153 FGNNP--YE-IPQHRSLEDRLRAAKLLKEE-----FPQCPIVVDTMDNNFNKAYGALPERLYIIQDGKVVYKGGPGPFGY 224 (237)
T ss_pred CCCCc--ee-ecCCCCHHHHHHHHHHHHhh-----CCCCCEEEEccCCHHHHHhCCCcceEEEEECCEEEEeCCCCCCcC
Confidence 2222 22 344433 3556766643 36889988 1445554565533 69999
Q ss_pred cHHHHHHHHHHHh
Q 025921 204 QKEDIEKELSKVS 216 (246)
Q Consensus 204 ~KedL~~~l~k~~ 216 (246)
+.+|+...|+|++
T Consensus 225 ~~~e~r~~L~~~~ 237 (237)
T PF00837_consen 225 SPEELREWLEKYK 237 (237)
T ss_pred CHHHHHHHHHhcC
Confidence 9999999999863
No 24
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=32.53 E-value=1.4e+02 Score=23.86 Aligned_cols=78 Identities=18% Similarity=0.198 Sum_probs=47.1
Q ss_pred CCcEEEEEcCCCCeEEEeCCCCCeeEEEEEe------cHHHHHHHHHHHHHhcccccCCceEEEEehhhHhhh----hcC
Q 025921 81 GTAVYTVSNSSNEFVLISDPNGAKSIGLLCF------RQEDAEAFLAQVRLRRKELRSAAKVVPITLDQVYML----KVE 150 (246)
Q Consensus 81 ~VPVF~Vtn~~g~plli~~~~g~~~v~~fFf------s~eDAqa~L~qlk~~nP~la~~~kV~~V~L~~Vy~l----k~~ 150 (246)
..|-|.++|.+|+.+....-.|...+..||- +......+ +++.++.- .++++|..|+.|...++ ++.
T Consensus 9 ~~p~f~l~~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l-~~~~~~~~--~~~v~vi~Is~d~~~~~~~~~~~~ 85 (154)
T PRK09437 9 IAPKFSLPDQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGL-RDNMDELK--KAGVVVLGISTDKPEKLSRFAEKE 85 (154)
T ss_pred cCCCcEeeCCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHH-HHHHHHHH--HCCCEEEEEcCCCHHHHHHHHHHh
Confidence 4688899999998777655455433333321 34433332 33333211 14689999999877666 335
Q ss_pred CeeEEEecCHH
Q 025921 151 GIAFRFLPDPA 161 (246)
Q Consensus 151 ~~~f~fVP~~~ 161 (246)
++.|.++-|..
T Consensus 86 ~~~~~~l~D~~ 96 (154)
T PRK09437 86 LLNFTLLSDED 96 (154)
T ss_pred CCCCeEEECCC
Confidence 67788887643
No 25
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=32.53 E-value=1.4e+02 Score=29.03 Aligned_cols=146 Identities=20% Similarity=0.253 Sum_probs=89.4
Q ss_pred HHhhcCCCcEEEEEcCCCCeEEEeCCCCCeeEEEEEecHHHHHHHHHHHHHhcccccCCceEEEEehhhHhhhhcCCeeE
Q 025921 75 VSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRLRRKELRSAAKVVPITLDQVYMLKVEGIAF 154 (246)
Q Consensus 75 I~ekL~~VPVF~Vtn~~g~plli~~~~g~~~v~~fFfs~eDAqa~L~qlk~~nP~la~~~kV~~V~L~~Vy~lk~~~~~f 154 (246)
|+-+-=|+=|.+|--..+.|-+-.-.+ + --++--|++++-+-+++.+|+.- =..|..|..|...++.++|..
T Consensus 29 Ie~QRLG~eViAVDrY~~APAmqVAhr---s---~Vi~MlD~~al~avv~rekPd~I-VpEiEAI~td~L~elE~~G~~- 100 (394)
T COG0027 29 IEAQRLGVEVIAVDRYANAPAMQVAHR---S---YVIDMLDGDALRAVVEREKPDYI-VPEIEAIATDALVELEEEGYT- 100 (394)
T ss_pred HHHHhcCCEEEEecCcCCChhhhhhhh---e---eeeeccCHHHHHHHHHhhCCCee-eehhhhhhHHHHHHHHhCCce-
Confidence 333334677777776666664422211 1 12345577777777778888732 235677888888888776655
Q ss_pred EEecCHHHHHH------HHHHHhhc-cC-----------CC------CCCCcEEeecceEEEeCCeEEEeeeecHHHHHH
Q 025921 155 RFLPDPAQIRN------ALELKAAD-VR-----------TG------FDGVPVFQSELLVVKKKNKRYCPVYFQKEDIEK 210 (246)
Q Consensus 155 ~fVP~~~qVe~------A~~L~~~~-gq-----------~~------f~GVPVF~~~~Lti~~~~~~~iPlFF~KedL~~ 210 (246)
+||+.+..+. .|+|.... |- +. --|.|.-.+.-+...-.|+.++ =+.||++.
T Consensus 101 -VVP~ArAt~ltMnRegiRrlAAeeLglpTs~Y~fa~s~~e~~~a~~~iGfPcvvKPvMSSSGkGqsvv---~~~e~ve~ 176 (394)
T COG0027 101 -VVPNARATKLTMNREGIRRLAAEELGLPTSKYRFADSLEELRAAVEKIGFPCVVKPVMSSSGKGQSVV---RSPEDVEK 176 (394)
T ss_pred -EccchHHHHhhhcHHHHHHHHHHHhCCCCccccccccHHHHHHHHHHcCCCeecccccccCCCCceee---cCHHHHHH
Confidence 8888877644 44443221 10 00 1377777766555544455544 58899999
Q ss_pred HHHHHhhhcCCCCCCcceeechhh
Q 025921 211 ELSKVSRASRGAGVSQHIMVEKHL 234 (246)
Q Consensus 211 ~l~k~~k~~~~P~~~~~i~v~sl~ 234 (246)
+|+.+....++ -++-+.|++++
T Consensus 177 AW~~A~~g~R~--~~~RVIVE~fv 198 (394)
T COG0027 177 AWEYAQQGGRG--GSGRVIVEEFV 198 (394)
T ss_pred HHHHHHhcCCC--CCCcEEEEEEe
Confidence 99999987644 34667777654
No 26
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=32.53 E-value=67 Score=28.43 Aligned_cols=60 Identities=32% Similarity=0.446 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhcccccCCceEEEEehhhHhhhhcCCeeEEEecCHHHHHHHHHHHhhcc-----------C--CCCCCCc
Q 025921 116 AEAFLAQVRLRRKELRSAAKVVPITLDQVYMLKVEGIAFRFLPDPAQIRNALELKAADV-----------R--TGFDGVP 182 (246)
Q Consensus 116 Aqa~L~qlk~~nP~la~~~kV~~V~L~~Vy~lk~~~~~f~fVP~~~qVe~A~~L~~~~g-----------q--~~f~GVP 182 (246)
.+.+++++++.. +++.+++|.+.- |..|...|++.|.+.|+++...+- | +...|-|
T Consensus 170 ~~~i~~~i~~~r----~~~D~vIv~~Hw-------G~e~~~~p~~~q~~~a~~lidaGaDiIiG~HpHv~q~~E~y~~~~ 238 (250)
T PF09587_consen 170 IERIKEDIREAR----KKADVVIVSLHW-------GIEYENYPTPEQRELARALIDAGADIIIGHHPHVIQPVEIYKGKP 238 (250)
T ss_pred HHHHHHHHHHHh----cCCCEEEEEecc-------CCCCCCCCCHHHHHHHHHHHHcCCCEEEeCCCCcccceEEECCEE
Confidence 355666665543 345666666543 445778899999999999987431 1 3356778
Q ss_pred EEee
Q 025921 183 VFQS 186 (246)
Q Consensus 183 VF~~ 186 (246)
|||+
T Consensus 239 I~YS 242 (250)
T PF09587_consen 239 IFYS 242 (250)
T ss_pred EEEe
Confidence 8874
No 27
>PF10787 YfmQ: Uncharacterised protein from bacillus cereus group; InterPro: IPR019723 This entry represents proteins conserved in the Bacillus cereus group. Several members are called YfmQ but the function is not known.
Probab=30.57 E-value=1.1e+02 Score=26.17 Aligned_cols=34 Identities=15% Similarity=0.315 Sum_probs=29.6
Q ss_pred CCeEEEeCCCCCeeEEEEEecHHHHHHHHHHHHH
Q 025921 92 NEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRL 125 (246)
Q Consensus 92 g~plli~~~~g~~~v~~fFfs~eDAqa~L~qlk~ 125 (246)
|.|++|....|.+.+..+-.+.+|=-..+.|.|+
T Consensus 92 gtPlvI~tKkGK~dv~f~vYsYdDHVDVVKQyKK 125 (149)
T PF10787_consen 92 GTPLVIDTKKGKKDVTFFVYSYDDHVDVVKQYKK 125 (149)
T ss_pred CCCEEEEeccCcceeEEEEEecccHHHHHHHhhh
Confidence 8999999999988888777899998888888877
No 28
>PF07411 DUF1508: Domain of unknown function (DUF1508); InterPro: IPR010879 This domain is found in a family of proteins, which have no known function. Members of this family are often found as tandem repeats and in some cases represent the whole protein.; PDB: 3BID_H 2K49_A 2K8E_A 2K7I_A.
Probab=30.33 E-value=1.5e+02 Score=20.11 Aligned_cols=38 Identities=16% Similarity=0.150 Sum_probs=26.5
Q ss_pred cEEEEEcCCCCeEEEeCCCCCeeEEEEEecHHHHHHHHHHHHHhccc
Q 025921 83 AVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRLRRKE 129 (246)
Q Consensus 83 PVF~Vtn~~g~plli~~~~g~~~v~~fFfs~eDAqa~L~qlk~~nP~ 129 (246)
.-|.+..++|+.+. +. ..|-++.+|+.-++.+|+.-|+
T Consensus 6 ~~f~L~a~ng~via-ss--------e~Y~sk~~a~~~I~~Vk~~a~~ 43 (49)
T PF07411_consen 6 FRFRLKAGNGEVIA-SS--------EGYSSKADAEKGIESVKKNAPD 43 (49)
T ss_dssp EEEEEE-TTS-EEE-EB--------EEBSSHHHHHHHHHHHHHHTTT
T ss_pred EEEEEEcCCCCEEE-ec--------CCcCCHHHHHHHHHHHHHhCCC
Confidence 34566666666555 22 3699999999999999997664
No 29
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=29.84 E-value=1.1e+02 Score=23.62 Aligned_cols=77 Identities=25% Similarity=0.338 Sum_probs=47.1
Q ss_pred CCcEEEEEcCCCCeEEEeCCCCCeeEEEEEe-------cHHHHHHHHHHHHHhcccccCCceEEEEehhhHhhhh----c
Q 025921 81 GTAVYTVSNSSNEFVLISDPNGAKSIGLLCF-------RQEDAEAFLAQVRLRRKELRSAAKVVPITLDQVYMLK----V 149 (246)
Q Consensus 81 ~VPVF~Vtn~~g~plli~~~~g~~~v~~fFf-------s~eDAqa~L~qlk~~nP~la~~~kV~~V~L~~Vy~lk----~ 149 (246)
..|=|.+++.+|..+....-.|.. +..+|+ +......+ +++..+-.+ +++.|..|+.+..-+++ .
T Consensus 2 ~~p~f~l~~~~g~~~~l~~~~gk~-~ll~f~~~~~cp~C~~~~~~l-~~~~~~~~~--~~~~vv~is~d~~~~~~~~~~~ 77 (140)
T cd03017 2 KAPDFTLPDQDGETVSLSDLRGKP-VVLYFYPKDDTPGCTKEACDF-RDLYEEFKA--LGAVVIGVSPDSVESHAKFAEK 77 (140)
T ss_pred CCCCccccCCCCCEEeHHHhCCCc-EEEEEeCCCCCCchHHHHHHH-HHHHHHHHH--CCCEEEEEcCCCHHHHHHHHHH
Confidence 467889999999888876655543 333444 33443332 233332221 46889999988776652 3
Q ss_pred CCeeEEEecCHH
Q 025921 150 EGIAFRFLPDPA 161 (246)
Q Consensus 150 ~~~~f~fVP~~~ 161 (246)
.++.|.++-|..
T Consensus 78 ~~~~~~~l~D~~ 89 (140)
T cd03017 78 YGLPFPLLSDPD 89 (140)
T ss_pred hCCCceEEECCc
Confidence 567777777654
No 30
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=29.75 E-value=1.9e+02 Score=22.55 Aligned_cols=77 Identities=21% Similarity=0.326 Sum_probs=44.2
Q ss_pred CCcEEEEEcCCCCeEEEeCCCCCeeEEEEEe-------cHHHHHHHHHHHHHhcccccCCceEEEEehhhHhhh----hc
Q 025921 81 GTAVYTVSNSSNEFVLISDPNGAKSIGLLCF-------RQEDAEAFLAQVRLRRKELRSAAKVVPITLDQVYML----KV 149 (246)
Q Consensus 81 ~VPVF~Vtn~~g~plli~~~~g~~~v~~fFf-------s~eDAqa~L~qlk~~nP~la~~~kV~~V~L~~Vy~l----k~ 149 (246)
.+|-|.+++.+|..+..+.-.|.+.+..+|+ +......+ +++..+..+ ++++|..|+.+..-.+ ++
T Consensus 6 ~~p~~~l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l-~~~~~~~~~--~~v~vi~vs~d~~~~~~~~~~~ 82 (149)
T cd03018 6 KAPDFELPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCAL-RDSLELFEA--AGAEVLGISVDSPFSLRAWAEE 82 (149)
T ss_pred cCCCcEecCCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHH-HHHHHHHHh--CCCEEEEecCCCHHHHHHHHHh
Confidence 4678889999998887765555333444454 22222222 222221111 4688999988765444 23
Q ss_pred CCeeEEEecCH
Q 025921 150 EGIAFRFLPDP 160 (246)
Q Consensus 150 ~~~~f~fVP~~ 160 (246)
.++.|.++-|.
T Consensus 83 ~~~~~~~~~D~ 93 (149)
T cd03018 83 NGLTFPLLSDF 93 (149)
T ss_pred cCCCceEecCC
Confidence 46777777664
No 31
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=29.72 E-value=64 Score=33.20 Aligned_cols=74 Identities=9% Similarity=0.113 Sum_probs=49.9
Q ss_pred cCCCCeEEEeCCCCCeeEEEEEecHHHHHHHHHHHHHhcccccCCceEEEEehhhHhhhhcCCeeEEEecCHHHHHHHHH
Q 025921 89 NSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRLRRKELRSAAKVVPITLDQVYMLKVEGIAFRFLPDPAQIRNALE 168 (246)
Q Consensus 89 n~~g~plli~~~~g~~~v~~fFfs~eDAqa~L~qlk~~nP~la~~~kV~~V~L~~Vy~lk~~~~~f~fVP~~~qVe~A~~ 168 (246)
=.+|+||+++.++ +..|||+-.||-.++=|--. ++++..|.+..||.-. +-++-|++
T Consensus 434 I~~GgplTvTdp~----mtRyfMTI~EAv~LVlqA~a----~~~gGeifvldMGepv---------------kI~dLAk~ 490 (588)
T COG1086 434 IAEGGPLTVTDPD----MTRFFMTIPEAVQLVLQAGA----IAKGGEIFVLDMGEPV---------------KIIDLAKA 490 (588)
T ss_pred HHcCCCccccCCC----ceeEEEEHHHHHHHHHHHHh----hcCCCcEEEEcCCCCe---------------EHHHHHHH
Confidence 3567888887764 88999999999998776544 2456667444444322 33567777
Q ss_pred HHhhccCCCCCCCcEEe
Q 025921 169 LKAADVRTGFDGVPVFQ 185 (246)
Q Consensus 169 L~~~~gq~~f~GVPVF~ 185 (246)
+..-.|....+.+|+-+
T Consensus 491 mi~l~g~~~~~dI~I~~ 507 (588)
T COG1086 491 MIELAGQTPPGDIAIKI 507 (588)
T ss_pred HHHHhCCCCCCCCCeEE
Confidence 77666755556677776
No 32
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=29.51 E-value=66 Score=31.17 Aligned_cols=40 Identities=20% Similarity=0.277 Sum_probs=27.0
Q ss_pred CCCcEEeecceEEEeC-CeEEEeeeecHHHHHHHHHHHhhh
Q 025921 179 DGVPVFQSELLVVKKK-NKRYCPVYFQKEDIEKELSKVSRA 218 (246)
Q Consensus 179 ~GVPVF~~~~Lti~~~-~~~~iPlFF~KedL~~~l~k~~k~ 218 (246)
-|+|||+++.-+.-++ .+.-+|+||.-++|+..+-+-.+.
T Consensus 288 ~G~~v~L~~~np~~~~l~~~~ipVlf~~d~L~~~~v~ea~r 328 (360)
T PF07429_consen 288 LGKKVFLSRDNPFWQDLKEQGIPVLFYGDELDEALVREAQR 328 (360)
T ss_pred cCCeEEEecCChHHHHHHhCCCeEEeccccCCHHHHHHHHH
Confidence 4999999765554333 344689999988887766444443
No 33
>PRK09981 hypothetical protein; Provisional
Probab=28.72 E-value=82 Score=25.10 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=19.2
Q ss_pred eeEEEEEecHHHHHHHHHHHHHh
Q 025921 104 KSIGLLCFRQEDAEAFLAQVRLR 126 (246)
Q Consensus 104 ~~v~~fFfs~eDAqa~L~qlk~~ 126 (246)
-.+-.+|.++++|+++|+.+..+
T Consensus 28 a~~~~~~~~~~~Ae~~l~~l~ek 50 (99)
T PRK09981 28 SKFSRFFATREEAESFMTKLKEL 50 (99)
T ss_pred EEEEEEeCCHHHHHHHHHHHHHH
Confidence 45778999999999999987664
No 34
>TIGR00743 conserved hypothetical protein. These small proteins are approximately 100 amino acids in length and appear to be found only in gamma proteobacteria. The function of this protein family is unknown.
Probab=28.17 E-value=1.8e+02 Score=23.04 Aligned_cols=53 Identities=19% Similarity=0.261 Sum_probs=33.8
Q ss_pred eeEEEEEecHHHHHHHHHHHHHhcccccC---CceEEEEehhhHhhhh--------cCCeeEEE
Q 025921 104 KSIGLLCFRQEDAEAFLAQVRLRRKELRS---AAKVVPITLDQVYMLK--------VEGIAFRF 156 (246)
Q Consensus 104 ~~v~~fFfs~eDAqa~L~qlk~~nP~la~---~~kV~~V~L~~Vy~lk--------~~~~~f~f 156 (246)
-.+-.+|=++++|+++|+.+..+-.+.-+ .++-...+.+.-++|+ .+.+.|++
T Consensus 29 a~~~~~~~~~~~Ae~~l~~l~ekAk~vesepc~I~~~i~~~e~g~~L~a~F~FsCqAEklIFQL 92 (95)
T TIGR00743 29 SKFSRFFATRAEAESFLAKLTEKARAVESEPCEIASEITDVEDGVELDADFTFSCQAEMIIFEL 92 (95)
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHHHhhcCCceeEEEEEEcCCcEEEEEEEEEEEEeeeEEEEe
Confidence 35677888999999999987664333223 2444444557777773 25666664
No 35
>PRK11611 enhanced serine sensitivity protein SseB; Provisional
Probab=28.06 E-value=47 Score=30.47 Aligned_cols=22 Identities=9% Similarity=0.309 Sum_probs=19.3
Q ss_pred eCCeEEEeeeecHHHHHHHHHH
Q 025921 193 KKNKRYCPVYFQKEDIEKELSK 214 (246)
Q Consensus 193 ~~~~~~iPlFF~KedL~~~l~k 214 (246)
.+|+.++|+|-+.+.++.++..
T Consensus 50 ~dG~~~iP~FTS~e~l~~a~~~ 71 (246)
T PRK11611 50 EDGTSVIPFFTSLEALQQAVED 71 (246)
T ss_pred CCCCEEEEEeCCHHHHHHhhhc
Confidence 4889999999999999987755
No 36
>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. The EVH1 domain binds to other proteins at proline rich sequences in either FPPPP or PPXXF motifs. It is found in the cytoskeletal reorganization proteins Enabled VASP, and WASP, and in the synaptic scaffolding protein Homer. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=25.92 E-value=2e+02 Score=22.30 Aligned_cols=32 Identities=28% Similarity=0.201 Sum_probs=24.4
Q ss_pred CCeEEEeCCCCCeeEEEEEecHHHHHHHHHHHHH
Q 025921 92 NEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRL 125 (246)
Q Consensus 92 g~plli~~~~g~~~v~~fFfs~eDAqa~L~qlk~ 125 (246)
.-+....+.+ ..+|+-|-+.+||.+|...++.
T Consensus 71 ~~Fh~w~~~~--~~~GL~F~se~eA~~F~~~v~~ 102 (104)
T cd00837 71 PFFHQWEDDN--CVYGLNFASEEEAAQFRKKVLE 102 (104)
T ss_pred CeEEEEEcCC--cEEEEeeCCHHHHHHHHHHHHh
Confidence 3444444443 4699999999999999999876
No 37
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events. This domain of around 115 amino acids is present in species ranging from yeast to mammals. Many EVH1-containing proteins associate with actin-based structures and play a role in cytoskeletal organisation. EVH1 domains recognise and bind the proline-rich motif FPPPP with low-affinity, further interactions then form between flanking residues [][]. WASP family proteins contain a EVH1 (WH1) in their N-terminals which bind proline-rich sequences in the WASP interacting protein. Proteins of the RanBP1 family contain a WH1 domain in their N-terminal region, which seems to bind a different sequence motif present in the C-terminal part of RanGTP protein [,]. Tertiary structure of the WH1 domain of the Mena protein revealed structure similarities with the pleckstrin homology (PH) domain. The overall fold consists of a compact parallel beta-sandwich, closed along one edge by a long alpha-helix. A highly conserved cluster of three surface-exposed aromatic side-chains forms the recognition site for the molecules target ligands. [].; GO: 0005515 protein binding; PDB: 1I2H_A 1DDV_A 1DDW_A 1EGX_A 3SYX_A 1TJ6_B 1XOD_B 1EVH_A 1I7A_B 2JP2_A ....
Probab=25.62 E-value=1.9e+02 Score=22.63 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=20.5
Q ss_pred eeEEEEEecHHHHHHHHHHHHHh
Q 025921 104 KSIGLLCFRQEDAEAFLAQVRLR 126 (246)
Q Consensus 104 ~~v~~fFfs~eDAqa~L~qlk~~ 126 (246)
..+|+-|-+.+||..|.+.+++.
T Consensus 88 ~~~GLnF~se~eA~~F~~~v~~~ 110 (111)
T PF00568_consen 88 CVYGLNFASEEEADQFYKKVQEA 110 (111)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHH
T ss_pred eEEEEecCCHHHHHHHHHHHhcc
Confidence 37999999999999999998874
No 38
>PF02829 3H: 3H domain; InterPro: IPR004173 The 3H domain is named after its three highly conserved histidine residues. The 3H domain appears to be a small molecule-binding domain, based on its occurrence with other domains []. Several proteins carrying this domain are transcriptional regulators from the biotin repressor family. The transcription regulator TM1602 from Thermotoga maritima is a DNA-binding protein thought to belong to a family of de novo NAD synthesis pathway regulators. TM1602 has an N-terminal DNA-binding domain and a C-terminal 3H regulatory domain. The N-terminal domain appears to bind to the NAD promoter region and repress the de novo NAD biosynthesis operon, while the C-terminal 3H domain may bind to nicotinamide, nicotinic acid, or other substrate/products []. The 3H domain has a 2-layer alpha/beta sandwich fold.; GO: 0005488 binding; PDB: 1J5Y_A.
Probab=25.41 E-value=3.1e+02 Score=21.59 Aligned_cols=53 Identities=13% Similarity=0.087 Sum_probs=34.4
Q ss_pred EEecHHHHHHHHHHHHHhcccccCCceEEEEehhhHhhhhcC-CeeEEEecCHHHHHHHHHHHhhcc
Q 025921 109 LCFRQEDAEAFLAQVRLRRKELRSAAKVVPITLDQVYMLKVE-GIAFRFLPDPAQIRNALELKAADV 174 (246)
Q Consensus 109 fFfs~eDAqa~L~qlk~~nP~la~~~kV~~V~L~~Vy~lk~~-~~~f~fVP~~~qVe~A~~L~~~~g 174 (246)
.--+++|++.|++++++.+- + -.+.+... -....-.|+++.++.+.+-+++.|
T Consensus 42 ~i~sr~Dv~~Fi~~l~~~~~------~-------~Ls~LT~GvH~HtI~a~~~e~l~~I~~~L~~~G 95 (98)
T PF02829_consen 42 NISSRRDVDKFIEKLEKSKA------K-------PLSSLTGGVHYHTIEAPDEEDLDKIEEALKKKG 95 (98)
T ss_dssp EE-SHHHHHHHHHHHHH--S---------------STTGGGGEEEEEEEESSHHHHHHHHHHHHHTT
T ss_pred ecCCHHHHHHHHHHHhccCC------c-------chHHhcCCEeeEEEEECCHHHHHHHHHHHHHCC
Confidence 34499999999999999632 2 12333332 123446799999999999887654
No 39
>PF14483 Cut8_M: Cut8 dimerisation domain; PDB: 3Q5W_A 3Q5X_A.
Probab=25.16 E-value=36 Score=22.37 Aligned_cols=23 Identities=13% Similarity=0.349 Sum_probs=19.5
Q ss_pred ecHHHHHHHHHHHHHhcccccCC
Q 025921 111 FRQEDAEAFLAQVRLRRKELRSA 133 (246)
Q Consensus 111 fs~eDAqa~L~qlk~~nP~la~~ 133 (246)
+|++.-+.+|..+..++|+++..
T Consensus 10 Ld~~qL~~lL~~l~~~HPei~~~ 32 (38)
T PF14483_consen 10 LDKDQLQSLLQSLCERHPEIQQE 32 (38)
T ss_dssp S-HHHHHHHHHHHHHHSTHHHHH
T ss_pred cCHHHHHHHHHHHHHhChhHHHH
Confidence 68889999999999999998754
No 40
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=24.37 E-value=93 Score=24.15 Aligned_cols=79 Identities=23% Similarity=0.213 Sum_probs=43.0
Q ss_pred CcEEEEEcCCCCeEEEeCCCCCeeEEEEEecHH---HHHHHHHHHHHhccccc----CCceEEEEehhhH----hhh---
Q 025921 82 TAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQE---DAEAFLAQVRLRRKELR----SAAKVVPITLDQV----YML--- 147 (246)
Q Consensus 82 VPVF~Vtn~~g~plli~~~~g~~~v~~fFfs~e---DAqa~L~qlk~~nP~la----~~~kV~~V~L~~V----y~l--- 147 (246)
+|-|++.+.+|..+....-.| +-+..+|+... -....+..+++...++. .+++|..|+.|.. -.+
T Consensus 2 ~p~f~l~~~~g~~~~l~~~~g-k~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~~~ 80 (142)
T cd02968 2 GPDFTLTDQDGRPVTLSDLKG-KPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLKAY 80 (142)
T ss_pred CCceEEEcCCCCEEchHHhCC-CEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHHHH
Confidence 688999999998876654444 33444442111 11222333333222222 2588888887532 222
Q ss_pred -hcCCeeEEEecCHH
Q 025921 148 -KVEGIAFRFLPDPA 161 (246)
Q Consensus 148 -k~~~~~f~fVP~~~ 161 (246)
+..+..|.++.+..
T Consensus 81 ~~~~~~~~~~l~~~~ 95 (142)
T cd02968 81 AKAFGPGWIGLTGTP 95 (142)
T ss_pred HHHhCCCcEEEECCH
Confidence 23457788888764
No 41
>PF11582 DUF3240: Protein of unknown function (DUF3240); InterPro: IPR021634 This family of proteins with unknown function appears to be restricted to Proteobacteria. ; PDB: 3CE8_A.
Probab=24.04 E-value=1.1e+02 Score=23.99 Aligned_cols=67 Identities=22% Similarity=0.237 Sum_probs=34.4
Q ss_pred HHHHhhcCC----CcEEEEEcCCC---CeEEEeCC-C--C--CeeEEEEEecHHHHHHHHHHHHHhcccccCCceEEEE
Q 025921 73 DFVSKTLAG----TAVYTVSNSSN---EFVLISDP-N--G--AKSIGLLCFRQEDAEAFLAQVRLRRKELRSAAKVVPI 139 (246)
Q Consensus 73 ~eI~ekL~~----VPVF~Vtn~~g---~plli~~~-~--g--~~~v~~fFfs~eDAqa~L~qlk~~nP~la~~~kV~~V 139 (246)
+.+++.|-. |+=|++.+-+| ..-..+.. + | ..-..-++++.++|+.+|+.+++..+.-.-..-|.||
T Consensus 17 d~lvD~Ll~~~~~v~GFt~~~~~g~g~~~~~~s~~EQV~G~~~~~~~~~~~~~~~~~~Ll~~L~~~~~~~~i~ywv~Pv 95 (102)
T PF11582_consen 17 DALVDYLLELPDGVSGFTSSPAEGHGSRHSLLSAAEQVSGRARRVRFQVILPEEDAEELLAALKQEFAGTGIRYWVTPV 95 (102)
T ss_dssp HHHHHHHTT--TT----EEEEEEEEE-------------EEEEEEEEEEEEEGGGHHHHHHHHHHHTTTS--EEEEEE-
T ss_pred HHHHHHHHHhcCccCCceEeeccccCCcccCCCHHHhcccccceEEEEEEECHHHHHHHHHHHHHHcCCCCcEEEEEhH
Confidence 445555543 45577776555 11111111 1 2 2245678999999999999999988763222334443
No 42
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=22.86 E-value=1.2e+02 Score=30.79 Aligned_cols=33 Identities=24% Similarity=0.284 Sum_probs=25.7
Q ss_pred CCeEEEeCCCCCeeEEEEEecHHHHHHHHHHHHHh
Q 025921 92 NEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRLR 126 (246)
Q Consensus 92 g~plli~~~~g~~~v~~fFfs~eDAqa~L~qlk~~ 126 (246)
.-|.++.++++ ++|+-|++.+||+.|++.|.++
T Consensus 106 ~ffhtFegddc--~aGLnF~~E~EA~~F~k~V~~r 138 (569)
T KOG3671|consen 106 TFFHTFEGDDC--QAGLNFASEEEAQKFRKKVQDR 138 (569)
T ss_pred cceeeeccccc--eeeecccCHHHHHHHHHHHHHH
Confidence 44555655554 7999999999999999988764
No 43
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=22.47 E-value=2.2e+02 Score=22.24 Aligned_cols=76 Identities=20% Similarity=0.297 Sum_probs=43.0
Q ss_pred CCcEEEEE--cCCCCeEEEeCCCCCeeEEEEEec------HHHHHHHHHHHHHhcccccCCceEEEEehhhH---hhh-h
Q 025921 81 GTAVYTVS--NSSNEFVLISDPNGAKSIGLLCFR------QEDAEAFLAQVRLRRKELRSAAKVVPITLDQV---YML-K 148 (246)
Q Consensus 81 ~VPVF~Vt--n~~g~plli~~~~g~~~v~~fFfs------~eDAqa~L~qlk~~nP~la~~~kV~~V~L~~V---y~l-k 148 (246)
.+|-|.++ +.+|..+..+.-+|...+..||-+ ..+.- .++++.+...+ +++++..|..+.- -+. +
T Consensus 5 ~~P~~~~~~~~~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p-~l~~l~~~~~~--~~v~~v~v~~~~~~~~~~~~~ 81 (146)
T PF08534_consen 5 KAPDFSLKDLDLDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELP-YLNELQEKYKD--KGVDVVGVSSDDDPPVREFLK 81 (146)
T ss_dssp B--CCEEEEEETTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHH-HHHHHHHHHHT--TTCEEEEEEESSSHHHHHHHH
T ss_pred CCCCeEEEeecCCCCEecHHHhCCCeEEEEEEccCCCCcchhhhh-hHHhhhhhhcc--CceEEEEecccCCHHHHHHHH
Confidence 47888885 499999998776665545444444 45554 77777664322 3567766655322 222 2
Q ss_pred cCCeeEEEecC
Q 025921 149 VEGIAFRFLPD 159 (246)
Q Consensus 149 ~~~~~f~fVP~ 159 (246)
+.++.|.++-|
T Consensus 82 ~~~~~~~~~~D 92 (146)
T PF08534_consen 82 KYGINFPVLSD 92 (146)
T ss_dssp HTTTTSEEEEE
T ss_pred hhCCCceEEec
Confidence 34555555555
No 44
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=21.79 E-value=3.1e+02 Score=22.49 Aligned_cols=52 Identities=12% Similarity=0.084 Sum_probs=33.5
Q ss_pred HHHhhcCCCcEEEEEcCC-CCeEEEeCCCCCeeEEEEEecHHHHHHHHHHHHH
Q 025921 74 FVSKTLAGTAVYTVSNSS-NEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRL 125 (246)
Q Consensus 74 eI~ekL~~VPVF~Vtn~~-g~plli~~~~g~~~v~~fFfs~eDAqa~L~qlk~ 125 (246)
..+++....=|.+..|.. +...+.-..++...+..++++++|++++++.++.
T Consensus 78 ~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~~G~~l~~~l~~ 130 (138)
T cd02122 78 KLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNPKGMEILELLER 130 (138)
T ss_pred HHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHHHHHHHHHHHHc
Confidence 445566667776666665 4333322222223466789999999999999875
No 45
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=21.36 E-value=5.2e+02 Score=22.08 Aligned_cols=129 Identities=15% Similarity=0.148 Sum_probs=66.0
Q ss_pred CCcEEEEEcCCCCeEEEeCCCCCeeEEEEEe-------cHHHHHHHHHHHHHhcccccCCceEEEEehhhHhhhhc----
Q 025921 81 GTAVYTVSNSSNEFVLISDPNGAKSIGLLCF-------RQEDAEAFLAQVRLRRKELRSAAKVVPITLDQVYMLKV---- 149 (246)
Q Consensus 81 ~VPVF~Vtn~~g~plli~~~~g~~~v~~fFf-------s~eDAqa~L~qlk~~nP~la~~~kV~~V~L~~Vy~lk~---- 149 (246)
..|-|.+.+..|. +..+.-.|.+-+.+||+ +..+..++-+ +..+.- ..+++|..|+.|.....+.
T Consensus 4 ~aP~F~~~~~~g~-~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~-~~~~f~--~~gv~vigvS~D~~~~~~~~~~~ 79 (203)
T cd03016 4 TAPNFEADTTHGP-IKFHDYLGDSWGILFSHPADFTPVCTTELGAFAK-LAPEFK--KRNVKLIGLSVDSVESHIKWIED 79 (203)
T ss_pred CCCCeEEecCCCc-EeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHH-HHHHHH--HcCCEEEEEECCCHHHHHHHHhh
Confidence 3688888887774 44433334333444444 4555444332 222111 2468999999998765421
Q ss_pred ------CCeeEEEecCHHHHHHHHHHHhhccCCCC-CCCcEEeecceEEEeCCeEE----Eee--eecHHHHHHHHHHHh
Q 025921 150 ------EGIAFRFLPDPAQIRNALELKAADVRTGF-DGVPVFQSELLVVKKKNKRY----CPV--YFQKEDIEKELSKVS 216 (246)
Q Consensus 150 ------~~~~f~fVP~~~qVe~A~~L~~~~gq~~f-~GVPVF~~~~Lti~~~~~~~----iPl--FF~KedL~~~l~k~~ 216 (246)
.++.|.++-|.. -+-|+.+ |-... .|.|.-.-....|..+|+-. .|+ =-+.+++.++++.+.
T Consensus 80 i~~~~~~~~~fpil~D~~-~~ia~~y----g~~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~lq 154 (203)
T cd03016 80 IEEYTGVEIPFPIIADPD-REVAKLL----GMIDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDALQ 154 (203)
T ss_pred HHHhcCCCCceeEEECch-HHHHHHc----CCccccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence 478899998864 2222322 21111 24453222233333333211 111 124677888887765
Q ss_pred hh
Q 025921 217 RA 218 (246)
Q Consensus 217 k~ 218 (246)
..
T Consensus 155 ~~ 156 (203)
T cd03016 155 LT 156 (203)
T ss_pred hH
Confidence 54
No 46
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=21.15 E-value=1.9e+02 Score=22.57 Aligned_cols=74 Identities=20% Similarity=0.206 Sum_probs=43.8
Q ss_pred CCcEEEEEcCCCCeEEEeCCCCCeeEEEEEe-------cHHHHHHHHHHHHHhcccccCCceEEEEehhhHhhhh----c
Q 025921 81 GTAVYTVSNSSNEFVLISDPNGAKSIGLLCF-------RQEDAEAFLAQVRLRRKELRSAAKVVPITLDQVYMLK----V 149 (246)
Q Consensus 81 ~VPVF~Vtn~~g~plli~~~~g~~~v~~fFf-------s~eDAqa~L~qlk~~nP~la~~~kV~~V~L~~Vy~lk----~ 149 (246)
..|=|.+.|.+|..+..+.-.|.. +..+|+ +..+... |+++.++ . .++.|..|+.+....++ .
T Consensus 5 ~aP~f~l~~~~g~~~~l~~~~gk~-vvl~f~~~~~c~~C~~e~~~-l~~~~~~---~-~~~~vi~Is~d~~~~~~~~~~~ 78 (143)
T cd03014 5 KAPDFTLVTSDLSEVSLADFAGKV-KVISVFPSIDTPVCATQTKR-FNKEAAK---L-DNTVVLTISADLPFAQKRWCGA 78 (143)
T ss_pred CCCCcEEECCCCcEEeHHHhCCCe-EEEEEEcCCCCCcCHHHHHH-HHHHHHh---c-CCCEEEEEECCCHHHHHHHHHh
Confidence 468899999999877765444543 444444 2333333 3333333 2 36899999998766452 1
Q ss_pred CC-eeEEEecCH
Q 025921 150 EG-IAFRFLPDP 160 (246)
Q Consensus 150 ~~-~~f~fVP~~ 160 (246)
-+ ..|.++-+.
T Consensus 79 ~~~~~~~~l~D~ 90 (143)
T cd03014 79 EGVDNVTTLSDF 90 (143)
T ss_pred cCCCCceEeecC
Confidence 23 256777665
No 47
>PF03243 MerB: Alkylmercury lyase; InterPro: IPR004927 Mercury is a highly toxic metal. Toxicity can result from three different mercurial forms: elemental, inorganic ion and organomercurial compounds. The ability of bacteria to detoxify mercurial compounds by reduction and volatilisation is conferred by the Mer genes, which are usually plasmid encoded (although chromosome resistance determinants have also occasionally been identified) []. Organomercurial lyase (MerB), also known as alkylmercury lyase, mediates the first of the two steps in the microbial detoxification of organomercurial salts (the other catalysed by mercuric reductase). Organomercurial lyase catalyses the protonolysis of the C-Hg bond in a wide range of organomercurial salts (primary, secondary, tertiary, alkyl, vinyl, allyl and aryl) to Hg(II) and the respective organic compound []: RHg(+) + H(+) = RH + Hg(2+) Hg(II) is subsequently detoxified by mercuric reductase. The enzyme has been purified to homogeneity in Escherichia coli and has been found to be a 22.4kDa monomer with no detectable cofactors or metal ions.; GO: 0018836 alkylmercury lyase activity, 0046413 organomercury catabolic process; PDB: 3FN8_B 3F2G_B 3F0P_A 3F2F_B 3F2H_A 3F0O_B 1S6L_A.
Probab=20.43 E-value=1.3e+02 Score=24.32 Aligned_cols=35 Identities=20% Similarity=0.270 Sum_probs=26.0
Q ss_pred EEEEEecHHHHHHHHHHHHHhcccccCCceEEEEehhhHhhhh
Q 025921 106 IGLLCFRQEDAEAFLAQVRLRRKELRSAAKVVPITLDQVYMLK 148 (246)
Q Consensus 106 v~~fFfs~eDAqa~L~qlk~~nP~la~~~kV~~V~L~~Vy~lk 148 (246)
...||-|.+.|++++++ +|+ ..-.+++++++|++.
T Consensus 86 ~i~fF~s~~~a~~W~~~----~p~----~~g~il~v~ea~~l~ 120 (127)
T PF03243_consen 86 YIHFFASEEAAEAWLAE----HPD----EGGQILSVEEAFELA 120 (127)
T ss_dssp G-EEESSHHHHHHHHHT----TTS----TT-EEEEHHHHHHHH
T ss_pred cEEecCCHHHHHHHHHH----CCC----CCeEEEeHHHHHHHH
Confidence 35699999999999864 453 456788999999873
No 48
>smart00461 WH1 WASP homology region 1. Region of the Wiskott-Aldrich syndrome protein (WASp) that contains point mutations in the majority of patients with WAS. Unknown function. Ena-like WH1 domains bind polyproline-containing peptides, and that Homer contains a WH1 domain.
Probab=20.37 E-value=2.8e+02 Score=21.65 Aligned_cols=24 Identities=25% Similarity=0.210 Sum_probs=20.9
Q ss_pred CeeEEEEEecHHHHHHHHHHHHHh
Q 025921 103 AKSIGLLCFRQEDAEAFLAQVRLR 126 (246)
Q Consensus 103 ~~~v~~fFfs~eDAqa~L~qlk~~ 126 (246)
...+|+-|-+.+||.+|...+...
T Consensus 82 ~~~~GLnF~se~EA~~F~~~v~~~ 105 (106)
T smart00461 82 KCVYGLNFASEEEAKKFRKKVLKA 105 (106)
T ss_pred CeEEEeecCCHHHHHHHHHHHHhc
Confidence 457999999999999999998763
Done!