Query 025922
Match_columns 246
No_of_seqs 158 out of 1681
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 20:41:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025922.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025922hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayj_A 50S ribosomal protein L 85.3 0.66 2.3E-05 29.4 2.8 30 121-150 16-45 (56)
2 3j21_g 50S ribosomal protein L 84.7 0.46 1.6E-05 29.7 1.9 29 122-150 12-40 (51)
3 1x4u_A Zinc finger, FYVE domai 78.9 0.97 3.3E-05 31.0 2.0 24 124-147 14-39 (84)
4 1wfk_A Zinc finger, FYVE domai 78.3 0.98 3.3E-05 31.4 1.9 27 121-147 6-34 (88)
5 1z2q_A LM5-1; membrane protein 76.8 1.2 4.2E-05 30.5 2.0 26 123-148 20-47 (84)
6 2yw8_A RUN and FYVE domain-con 75.4 1.3 4.5E-05 30.2 1.9 26 123-148 18-45 (82)
7 3t7l_A Zinc finger FYVE domain 74.3 2.1 7.3E-05 29.7 2.8 25 124-148 20-46 (90)
8 1joc_A EEA1, early endosomal a 71.1 1.6 5.5E-05 32.4 1.6 24 124-147 69-94 (125)
9 1vfy_A Phosphatidylinositol-3- 70.0 1.7 5.8E-05 29.0 1.3 24 125-148 12-37 (73)
10 1dvp_A HRS, hepatocyte growth 65.5 2.2 7.6E-05 34.7 1.4 24 125-148 162-187 (220)
11 1y02_A CARP2, FYVE-ring finger 64.6 1.8 6.1E-05 32.0 0.6 23 125-147 20-44 (120)
12 2dkt_A Ring finger and CHY zin 62.0 2.9 9.8E-05 31.8 1.3 45 119-163 78-126 (143)
13 3zyq_A Hepatocyte growth facto 59.3 3.1 0.00011 34.0 1.3 24 125-148 165-190 (226)
14 2cr8_A MDM4 protein; ZF-ranbp 54.6 4.9 0.00017 24.8 1.2 21 125-145 12-32 (53)
15 2c6a_A Ubiquitin-protein ligas 50.9 6 0.0002 23.9 1.2 23 124-146 13-35 (46)
16 3u5e_m 60S ribosomal protein L 50.4 7.2 0.00024 28.6 1.9 25 123-147 92-118 (128)
17 1wfl_A Zinc finger protein 216 43.3 30 0.001 23.1 3.8 39 123-162 24-67 (74)
18 3j20_Y 30S ribosomal protein S 41.4 10 0.00035 23.3 1.2 24 122-145 17-44 (50)
19 2vrw_B P95VAV, VAV1, proto-onc 39.8 11 0.00038 33.1 1.7 28 121-148 354-384 (406)
20 3p8b_A DNA-directed RNA polyme 35.6 16 0.00055 24.8 1.6 25 120-146 19-43 (81)
21 2zjr_Z 50S ribosomal protein L 34.1 22 0.00074 22.7 1.9 24 121-146 27-51 (60)
22 3mpx_A FYVE, rhogef and PH dom 33.8 8.7 0.0003 34.0 0.0 25 123-147 374-400 (434)
23 1twf_L ABC10-alpha, DNA-direct 30.5 26 0.00087 23.1 1.9 28 122-149 26-56 (70)
24 2xzm_5 Ribosomal protein S26E 30.1 13 0.00043 27.2 0.4 20 137-156 19-38 (119)
25 3u5c_a 40S ribosomal protein S 29.6 13 0.00044 27.2 0.3 19 137-155 19-37 (119)
26 2apo_B Ribosome biogenesis pro 29.5 29 0.00098 22.2 1.9 22 123-146 5-26 (60)
27 3j20_R 30S ribosomal protein S 29.0 22 0.00077 25.7 1.5 10 152-161 18-27 (113)
28 1wil_A KIAA1045 protein; ring 27.1 48 0.0017 22.7 2.8 24 124-147 15-38 (89)
29 3gj3_B Nuclear pore complex pr 24.9 34 0.0012 19.0 1.5 20 126-145 9-28 (33)
30 3v2d_5 50S ribosomal protein L 23.6 32 0.0011 21.9 1.4 23 122-146 28-51 (60)
31 3lpe_B DNA-directed RNA polyme 23.3 36 0.0012 21.6 1.5 21 125-147 2-22 (59)
32 2con_A RUH-035 protein, NIN on 22.6 68 0.0023 21.6 2.9 25 122-146 13-38 (79)
33 3arc_T Photosystem II reaction 21.8 1.1E+02 0.0038 16.8 4.1 15 77-91 17-31 (32)
34 1faq_A RAF-1; transferase, ser 21.6 61 0.0021 19.2 2.4 24 122-146 12-35 (52)
35 2elu_A Zinc finger protein 406 20.6 23 0.00079 19.6 0.2 8 139-146 10-17 (37)
No 1
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=85.31 E-value=0.66 Score=29.42 Aligned_cols=30 Identities=33% Similarity=0.670 Sum_probs=25.1
Q ss_pred CCCceeccccCcccCCCCccccccCccccc
Q 025922 121 NPRIRYCRKCNQLKPPRCHHCSVCGRCILK 150 (246)
Q Consensus 121 ~~~~~~C~~C~~~kP~Rs~HC~~C~~CV~~ 150 (246)
......|.+|...-|+|+..|+.||.--+|
T Consensus 16 ~~~k~ICrkC~ARnp~~A~~CRKCg~~~LR 45 (56)
T 2ayj_A 16 VFLKKVCRKCGALNPIRATKCRRCHSTNLR 45 (56)
T ss_dssp SCCCEEETTTCCEECTTCSSCTTTCCCCEE
T ss_pred HhchhhhccccCcCCcccccccCCCCCCCC
Confidence 445789999999999999999999865443
No 2
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=84.69 E-value=0.46 Score=29.67 Aligned_cols=29 Identities=24% Similarity=0.550 Sum_probs=24.7
Q ss_pred CCceeccccCcccCCCCccccccCccccc
Q 025922 122 PRIRYCRKCNQLKPPRCHHCSVCGRCILK 150 (246)
Q Consensus 122 ~~~~~C~~C~~~kP~Rs~HC~~C~~CV~~ 150 (246)
...+.|..|...-|+++..|+.||.--++
T Consensus 12 ~~k~iCpkC~a~~~~gaw~CrKCG~~~lr 40 (51)
T 3j21_g 12 FKKYVCLRCGATNPWGAKKCRKCGYKRLR 40 (51)
T ss_dssp SSEEECTTTCCEECTTCSSCSSSSSCCCE
T ss_pred hCCccCCCCCCcCCCCceecCCCCCcccc
Confidence 45689999999999999999999875443
No 3
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.95 E-value=0.97 Score=31.05 Aligned_cols=24 Identities=25% Similarity=0.628 Sum_probs=17.3
Q ss_pred ceeccccCc--ccCCCCccccccCcc
Q 025922 124 IRYCRKCNQ--LKPPRCHHCSVCGRC 147 (246)
Q Consensus 124 ~~~C~~C~~--~kP~Rs~HC~~C~~C 147 (246)
...|..|+. ---.|-|||+.||+-
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~v 39 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNS 39 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCE
T ss_pred CCcCcCcCCccccchhhhhhcCCCcE
Confidence 456777764 235688999999874
No 4
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=78.28 E-value=0.98 Score=31.44 Aligned_cols=27 Identities=22% Similarity=0.399 Sum_probs=19.3
Q ss_pred CCCceeccccCc--ccCCCCccccccCcc
Q 025922 121 NPRIRYCRKCNQ--LKPPRCHHCSVCGRC 147 (246)
Q Consensus 121 ~~~~~~C~~C~~--~kP~Rs~HC~~C~~C 147 (246)
..+...|..|+. ---.|-|||+.||+-
T Consensus 6 ~~~~~~C~~C~~~F~~~~RrHHCR~CG~v 34 (88)
T 1wfk_A 6 SGMESRCYGCAVKFTLFKKEYGCKNCGRA 34 (88)
T ss_dssp CCCCSBCTTTCCBCCSSSCEEECSSSCCE
T ss_pred CCcCCCCcCcCCcccCccccccCCCCCCE
Confidence 344567888875 234688999999873
No 5
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=76.76 E-value=1.2 Score=30.52 Aligned_cols=26 Identities=31% Similarity=0.715 Sum_probs=18.6
Q ss_pred CceeccccCc--ccCCCCccccccCccc
Q 025922 123 RIRYCRKCNQ--LKPPRCHHCSVCGRCI 148 (246)
Q Consensus 123 ~~~~C~~C~~--~kP~Rs~HC~~C~~CV 148 (246)
+...|..|+. ---.|-|||+.||+-+
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~ 47 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVL 47 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEE
T ss_pred CCCCCcCcCCccccchhcccccCCCcEE
Confidence 4567888875 2246889999998743
No 6
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=75.37 E-value=1.3 Score=30.24 Aligned_cols=26 Identities=35% Similarity=0.842 Sum_probs=18.4
Q ss_pred CceeccccCc--ccCCCCccccccCccc
Q 025922 123 RIRYCRKCNQ--LKPPRCHHCSVCGRCI 148 (246)
Q Consensus 123 ~~~~C~~C~~--~kP~Rs~HC~~C~~CV 148 (246)
+...|..|+. ---.|-|||+.||+-+
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~ 45 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIF 45 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEE
Confidence 3467888875 2346889999998743
No 7
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=74.30 E-value=2.1 Score=29.75 Aligned_cols=25 Identities=32% Similarity=0.810 Sum_probs=17.2
Q ss_pred ceeccccCc--ccCCCCccccccCccc
Q 025922 124 IRYCRKCNQ--LKPPRCHHCSVCGRCI 148 (246)
Q Consensus 124 ~~~C~~C~~--~kP~Rs~HC~~C~~CV 148 (246)
...|..|+. ---.|-|||+.||+-+
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~ 46 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVF 46 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEE
Confidence 456888874 2235789999998743
No 8
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=71.14 E-value=1.6 Score=32.41 Aligned_cols=24 Identities=33% Similarity=0.830 Sum_probs=17.6
Q ss_pred ceeccccCcc--cCCCCccccccCcc
Q 025922 124 IRYCRKCNQL--KPPRCHHCSVCGRC 147 (246)
Q Consensus 124 ~~~C~~C~~~--kP~Rs~HC~~C~~C 147 (246)
...|..|... --.|-|||+.||+-
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~v 94 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNI 94 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCE
T ss_pred CCCCcCcCCccccccccccCCCCCeE
Confidence 4678888752 34688999999874
No 9
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=70.02 E-value=1.7 Score=28.97 Aligned_cols=24 Identities=33% Similarity=0.750 Sum_probs=16.9
Q ss_pred eeccccCcc--cCCCCccccccCccc
Q 025922 125 RYCRKCNQL--KPPRCHHCSVCGRCI 148 (246)
Q Consensus 125 ~~C~~C~~~--kP~Rs~HC~~C~~CV 148 (246)
..|..|+.. --.|-|||+.||+-+
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~ 37 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVF 37 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CcccCCCCccCCccccccCCCCCEEE
Confidence 357888742 346889999998743
No 10
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=65.55 E-value=2.2 Score=34.65 Aligned_cols=24 Identities=38% Similarity=0.928 Sum_probs=18.0
Q ss_pred eeccccCc--ccCCCCccccccCccc
Q 025922 125 RYCRKCNQ--LKPPRCHHCSVCGRCI 148 (246)
Q Consensus 125 ~~C~~C~~--~kP~Rs~HC~~C~~CV 148 (246)
..|..|+. ---.|-|||+.||+-+
T Consensus 162 ~~C~~C~~~F~~~~rrhhCr~CG~v~ 187 (220)
T 1dvp_A 162 RVCHRCRVEFTFTNRKHHCRNCGQVF 187 (220)
T ss_dssp SBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CccCCCCCccCCcccccccCCcCCEE
Confidence 68888874 2346899999998754
No 11
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=64.63 E-value=1.8 Score=32.01 Aligned_cols=23 Identities=22% Similarity=0.635 Sum_probs=16.6
Q ss_pred eeccccCc--ccCCCCccccccCcc
Q 025922 125 RYCRKCNQ--LKPPRCHHCSVCGRC 147 (246)
Q Consensus 125 ~~C~~C~~--~kP~Rs~HC~~C~~C 147 (246)
..|..|+. .-..|-|||+.||+-
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~i 44 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKN 44 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCE
T ss_pred CcccCcCCccccccccccCCCCCCe
Confidence 56777764 234688999999874
No 12
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=61.97 E-value=2.9 Score=31.84 Aligned_cols=45 Identities=24% Similarity=0.543 Sum_probs=32.5
Q ss_pred CCCCCceeccccCcccCCC-CccccccCcccccC---Ccccccccceee
Q 025922 119 PLNPRIRYCRKCNQLKPPR-CHHCSVCGRCILKM---DHHCVWVVNCVG 163 (246)
Q Consensus 119 ~~~~~~~~C~~C~~~kP~R-s~HC~~C~~CV~~~---DHhCpwi~nCIG 163 (246)
+......||.+|+.+.+++ ..||..||-|...- =-||.=-|.|+.
T Consensus 78 g~~f~~Y~C~~C~l~d~~k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s 126 (143)
T 2dkt_A 78 STLFGEYYCSICHLFDKDKRQYHCESCGICRIGPKEDFFHCLKCNLCLT 126 (143)
T ss_dssp CCBSCSEECSSSCCEECSSSEEEETTTTEEEESCGGGEEEETTTTEEEE
T ss_pred CccceeeEeceeecccCCCceecCCCCCceeccCCcCcEECCcCCeeec
Confidence 3456678999999986654 57888888888752 246777777764
No 13
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=59.27 E-value=3.1 Score=33.99 Aligned_cols=24 Identities=33% Similarity=0.822 Sum_probs=17.4
Q ss_pred eeccccCc--ccCCCCccccccCccc
Q 025922 125 RYCRKCNQ--LKPPRCHHCSVCGRCI 148 (246)
Q Consensus 125 ~~C~~C~~--~kP~Rs~HC~~C~~CV 148 (246)
..|..|+. ---.|-|||+.||+.+
T Consensus 165 ~~C~~C~~~F~~~~RrhHCR~CG~v~ 190 (226)
T 3zyq_A 165 EECHRCRVQFGVMTRKHHCRACGQIF 190 (226)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CCCcCcCCCCCccccccccCCCcCEe
Confidence 47888874 2234789999998853
No 14
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=54.55 E-value=4.9 Score=24.82 Aligned_cols=21 Identities=24% Similarity=0.689 Sum_probs=13.5
Q ss_pred eeccccCcccCCCCccccccC
Q 025922 125 RYCRKCNQLKPPRCHHCSVCG 145 (246)
Q Consensus 125 ~~C~~C~~~kP~Rs~HC~~C~ 145 (246)
=-|.+|+..-||-..||..|-
T Consensus 12 WkC~~C~k~N~Pl~ryC~rCw 32 (53)
T 2cr8_A 12 WQCTECKKFNSPSKRYCFRCW 32 (53)
T ss_dssp EECSSSCCEECSSCCBCTTTC
T ss_pred eecccccccCCCccchhHHHH
Confidence 457777776677666666553
No 15
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=50.94 E-value=6 Score=23.90 Aligned_cols=23 Identities=35% Similarity=0.878 Sum_probs=16.6
Q ss_pred ceeccccCcccCCCCccccccCc
Q 025922 124 IRYCRKCNQLKPPRCHHCSVCGR 146 (246)
Q Consensus 124 ~~~C~~C~~~kP~Rs~HC~~C~~ 146 (246)
.=.|.+|+..-||-..||..|-.
T Consensus 13 ~WkC~~C~~~N~Pl~r~C~rCw~ 35 (46)
T 2c6a_A 13 YWKCTSCNEMNPPLPSHCNRCWA 35 (46)
T ss_dssp CEECTTTCCEECSSCSSCTTTCC
T ss_pred eEecccccccCCCccchhhHHHh
Confidence 34688888888888877776643
No 16
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=50.42 E-value=7.2 Score=28.63 Aligned_cols=25 Identities=40% Similarity=0.938 Sum_probs=21.8
Q ss_pred CceeccccCcccCCCCcccc--ccCcc
Q 025922 123 RIRYCRKCNQLKPPRCHHCS--VCGRC 147 (246)
Q Consensus 123 ~~~~C~~C~~~kP~Rs~HC~--~C~~C 147 (246)
....|.+|...-|+|+..|+ .||..
T Consensus 92 ~~~ic~~~~~~~~~~~~~~~~~~c~~~ 118 (128)
T 3u5e_m 92 DKSVCRKCYARLPPRATNCRKRKCGHT 118 (128)
T ss_dssp SCEEETTTCCEECTTCSSCSCTTTTSC
T ss_pred ceEeeccccccCCchhhccchhhCCCc
Confidence 45899999999999999999 48764
No 17
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=43.26 E-value=30 Score=23.09 Aligned_cols=39 Identities=18% Similarity=0.424 Sum_probs=22.4
Q ss_pred CceeccccCcccCCCCccccccCcc-----cccCCccccccccee
Q 025922 123 RIRYCRKCNQLKPPRCHHCSVCGRC-----ILKMDHHCVWVVNCV 162 (246)
Q Consensus 123 ~~~~C~~C~~~kP~Rs~HC~~C~~C-----V~~~DHhCpwi~nCI 162 (246)
..+.|..|+..--.=...|+ |+.= ..-=||.|++-..-.
T Consensus 24 ~~nRC~~CrKkvgL~gf~Cr-Cg~~FCs~HRy~e~H~C~fDyk~~ 67 (74)
T 1wfl_A 24 KKNRCFMCRKKVGLTGFDCR-CGNLFCGLHRYSDKHNCPYDYKAE 67 (74)
T ss_dssp CTTBCSSSCCBCGGGCEECT-TSCEECSSSCSTTTTTCCCCGGGT
T ss_pred cCCcChhhCCcccccCeecC-CCCEechhcCCCccCCCcchhhhh
Confidence 45689999864222246777 6642 222388888654433
No 18
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=41.44 E-value=10 Score=23.27 Aligned_cols=24 Identities=21% Similarity=0.779 Sum_probs=14.6
Q ss_pred CCceeccccCc---ccC-CCCccccccC
Q 025922 122 PRIRYCRKCNQ---LKP-PRCHHCSVCG 145 (246)
Q Consensus 122 ~~~~~C~~C~~---~kP-~Rs~HC~~C~ 145 (246)
-..++|..|.. ..+ ...++|..|+
T Consensus 17 ~~~k~CP~CG~~~fm~~~~~R~~C~kCG 44 (50)
T 3j20_Y 17 RKNKFCPRCGPGVFMADHGDRWACGKCG 44 (50)
T ss_dssp CSSEECSSSCSSCEEEECSSEEECSSSC
T ss_pred EecccCCCCCCceEEecCCCeEECCCCC
Confidence 35789999975 222 2245677665
No 19
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=39.82 E-value=11 Score=33.08 Aligned_cols=28 Identities=18% Similarity=0.306 Sum_probs=20.3
Q ss_pred CCCceeccccCccc---CCCCccccccCccc
Q 025922 121 NPRIRYCRKCNQLK---PPRCHHCSVCGRCI 148 (246)
Q Consensus 121 ~~~~~~C~~C~~~k---P~Rs~HC~~C~~CV 148 (246)
.....+|..|+..- -.|-|||+.||..|
T Consensus 354 ~~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~ 384 (406)
T 2vrw_B 354 FEETTSCKACQMLLRGTFYQGYRCYRCRAPA 384 (406)
T ss_dssp CSSCCBCTTTCCBCCSSSSCEEEETTTCCEE
T ss_pred CCCCCCCccccchhceeCCCCCCCCCCcCcc
Confidence 34678999998632 46889999887533
No 20
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=35.56 E-value=16 Score=24.83 Aligned_cols=25 Identities=28% Similarity=0.778 Sum_probs=17.2
Q ss_pred CCCCceeccccCcccCCCCccccccCc
Q 025922 120 LNPRIRYCRKCNQLKPPRCHHCSVCGR 146 (246)
Q Consensus 120 ~~~~~~~C~~C~~~kP~Rs~HC~~C~~ 146 (246)
.....+-|..|+..+++. -|..|+.
T Consensus 19 ~~m~~rAC~~C~~v~~~d--~CPnCgs 43 (81)
T 3p8b_A 19 SHMSEKACRHCHYITSED--RCPVCGS 43 (81)
T ss_dssp ---CCEEETTTCBEESSS--SCTTTCC
T ss_pred cchhHHHHhhCCCccCCC--CCCCCCC
Confidence 344568899999998876 3777765
No 21
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=34.14 E-value=22 Score=22.69 Aligned_cols=24 Identities=38% Similarity=0.948 Sum_probs=16.9
Q ss_pred CCCceeccccCcccCCCCcc-ccccCc
Q 025922 121 NPRIRYCRKCNQLKPPRCHH-CSVCGR 146 (246)
Q Consensus 121 ~~~~~~C~~C~~~kP~Rs~H-C~~C~~ 146 (246)
......|..|+..+ +.|| |..||.
T Consensus 27 ~p~l~~c~~cG~~~--~pH~vc~~CG~ 51 (60)
T 2zjr_Z 27 APNLTECPQCHGKK--LSHHICPNCGY 51 (60)
T ss_dssp CCCCEECTTTCCEE--CTTBCCTTTCB
T ss_pred CCCceECCCCCCEe--CCceEcCCCCc
Confidence 34567899999774 6666 877774
No 22
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=33.76 E-value=8.7 Score=34.00 Aligned_cols=25 Identities=32% Similarity=0.814 Sum_probs=0.0
Q ss_pred CceeccccCc--ccCCCCccccccCcc
Q 025922 123 RIRYCRKCNQ--LKPPRCHHCSVCGRC 147 (246)
Q Consensus 123 ~~~~C~~C~~--~kP~Rs~HC~~C~~C 147 (246)
+..-|..|.. ---.|-|||+.||+.
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~ 400 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKI 400 (434)
T ss_dssp ---------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCE
Confidence 3466888874 223478999999984
No 23
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=30.52 E-value=26 Score=23.09 Aligned_cols=28 Identities=25% Similarity=0.562 Sum_probs=20.3
Q ss_pred CCceeccccCcc---cCCCCccccccCcccc
Q 025922 122 PRIRYCRKCNQL---KPPRCHHCSVCGRCIL 149 (246)
Q Consensus 122 ~~~~~C~~C~~~---kP~Rs~HC~~C~~CV~ 149 (246)
.....|..|... ++..+-||+.||.-|+
T Consensus 26 ~v~Y~C~~CG~~~e~~~~d~irCp~CG~RIL 56 (70)
T 1twf_L 26 TLKYICAECSSKLSLSRTDAVRCKDCGHRIL 56 (70)
T ss_dssp CCCEECSSSCCEECCCTTSTTCCSSSCCCCC
T ss_pred eEEEECCCCCCcceeCCCCCccCCCCCceEe
Confidence 345689999864 5556778999988655
No 24
>2xzm_5 Ribosomal protein S26E containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_5
Probab=30.10 E-value=13 Score=27.18 Aligned_cols=20 Identities=30% Similarity=0.456 Sum_probs=14.6
Q ss_pred CCccccccCcccccCCcccc
Q 025922 137 RCHHCSVCGRCILKMDHHCV 156 (246)
Q Consensus 137 Rs~HC~~C~~CV~~~DHhCp 156 (246)
+.-||..|++||.+----+.
T Consensus 19 ~~V~C~nCgr~vPKDKAIKr 38 (119)
T 2xzm_5 19 RTVPCTNCGRQVAKDKAVKR 38 (119)
T ss_dssp CEEECTTTCCEEETTTSEEC
T ss_pred ccEeeCCccccCcccceeEE
Confidence 34579999999998554443
No 25
>3u5c_a 40S ribosomal protein S26-A, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_a
Probab=29.59 E-value=13 Score=27.18 Aligned_cols=19 Identities=21% Similarity=0.314 Sum_probs=13.5
Q ss_pred CCccccccCcccccCCccc
Q 025922 137 RCHHCSVCGRCILKMDHHC 155 (246)
Q Consensus 137 Rs~HC~~C~~CV~~~DHhC 155 (246)
+.-||..|++||++----+
T Consensus 19 ~~V~C~nCgr~vPKDKAIK 37 (119)
T 3u5c_a 19 KPVRCVNCSKSIPKDKAIK 37 (119)
T ss_dssp CEEECTTTCCEEEGGGSCE
T ss_pred ccEeeccccccccccceee
Confidence 3447999999999844433
No 26
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=29.45 E-value=29 Score=22.18 Aligned_cols=22 Identities=32% Similarity=0.815 Sum_probs=16.4
Q ss_pred CceeccccCcccCCCCccccccCc
Q 025922 123 RIRYCRKCNQLKPPRCHHCSVCGR 146 (246)
Q Consensus 123 ~~~~C~~C~~~kP~Rs~HC~~C~~ 146 (246)
..+.|..|+.+-- .+.|..||.
T Consensus 5 ~mr~C~~CgvYTL--k~~CP~CG~ 26 (60)
T 2apo_B 5 RMKKCPKCGLYTL--KEICPKCGE 26 (60)
T ss_dssp CCEECTTTCCEES--SSBCSSSCS
T ss_pred hceeCCCCCCEec--cccCcCCCC
Confidence 4688888887766 666888775
No 27
>3j20_R 30S ribosomal protein S17P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=29.04 E-value=22 Score=25.72 Aligned_cols=10 Identities=40% Similarity=0.836 Sum_probs=8.8
Q ss_pred Ccccccccce
Q 025922 152 DHHCVWVVNC 161 (246)
Q Consensus 152 DHhCpwi~nC 161 (246)
|..|||.||-
T Consensus 18 d~~cPf~G~~ 27 (113)
T 3j20_R 18 DPKCPWHGNL 27 (113)
T ss_dssp CSSSTTSSSC
T ss_pred CCCCCCccee
Confidence 9999999983
No 28
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=27.11 E-value=48 Score=22.71 Aligned_cols=24 Identities=25% Similarity=0.596 Sum_probs=20.5
Q ss_pred ceeccccCcccCCCCccccccCcc
Q 025922 124 IRYCRKCNQLKPPRCHHCSVCGRC 147 (246)
Q Consensus 124 ~~~C~~C~~~kP~Rs~HC~~C~~C 147 (246)
...|..|..+--.--.-||+|+|+
T Consensus 15 D~~C~VC~~~t~~~l~pCRvC~Rv 38 (89)
T 1wil_A 15 DEMCDVCEVWTAESLFPCRVCTRV 38 (89)
T ss_dssp SCCCTTTCCCCSSCCSSCSSSSSC
T ss_pred CcccCccccccccceecccccccc
Confidence 467999999988888889999996
No 29
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=24.90 E-value=34 Score=18.97 Aligned_cols=20 Identities=25% Similarity=0.708 Sum_probs=11.5
Q ss_pred eccccCcccCCCCccccccC
Q 025922 126 YCRKCNQLKPPRCHHCSVCG 145 (246)
Q Consensus 126 ~C~~C~~~kP~Rs~HC~~C~ 145 (246)
-|..|-..-++.+.+|..|+
T Consensus 9 ~C~~C~~~N~~~~~kC~aC~ 28 (33)
T 3gj3_B 9 DCDTCLVQNKPEAVKCVACE 28 (33)
T ss_dssp ECTTTCCEECTTCSBCTTTC
T ss_pred eCCcccCCCccccCEEcccC
Confidence 35566655555565665554
No 30
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=23.63 E-value=32 Score=21.85 Aligned_cols=23 Identities=30% Similarity=0.857 Sum_probs=15.7
Q ss_pred CCceeccccCcccCCCCcc-ccccCc
Q 025922 122 PRIRYCRKCNQLKPPRCHH-CSVCGR 146 (246)
Q Consensus 122 ~~~~~C~~C~~~kP~Rs~H-C~~C~~ 146 (246)
+....|.+|... -++|| |..||.
T Consensus 28 p~l~~c~~cGe~--~~~H~vc~~CG~ 51 (60)
T 3v2d_5 28 PTLVPCPECKAM--KPPHTVCPECGY 51 (60)
T ss_dssp CCCEECTTTCCE--ECTTSCCTTTCE
T ss_pred CceeECCCCCCe--ecceEEcCCCCc
Confidence 446788889864 45566 777763
No 31
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=23.26 E-value=36 Score=21.57 Aligned_cols=21 Identities=33% Similarity=0.763 Sum_probs=16.8
Q ss_pred eeccccCcccCCCCccccccCcc
Q 025922 125 RYCRKCNQLKPPRCHHCSVCGRC 147 (246)
Q Consensus 125 ~~C~~C~~~kP~Rs~HC~~C~~C 147 (246)
+=|..|+..++.. -|..|+.|
T Consensus 2 rAC~~C~~v~~~~--~CpnC~~~ 22 (59)
T 3lpe_B 2 RACLKCKYLTNDE--ICPICHSP 22 (59)
T ss_dssp EEETTTCBEESSS--BCTTTCCB
T ss_pred cccccCCcccCCC--CCCCCCCC
Confidence 5689999988877 58888875
No 32
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=22.62 E-value=68 Score=21.57 Aligned_cols=25 Identities=24% Similarity=0.553 Sum_probs=16.4
Q ss_pred CCceeccccCcccCCCCcc-ccccCc
Q 025922 122 PRIRYCRKCNQLKPPRCHH-CSVCGR 146 (246)
Q Consensus 122 ~~~~~C~~C~~~kP~Rs~H-C~~C~~ 146 (246)
...-.|..|...-++-+++ |+.||.
T Consensus 13 ~~iLrC~aCf~~t~~~~k~FCp~CGn 38 (79)
T 2con_A 13 SYILRCHGCFKTTSDMNRVFCGHCGN 38 (79)
T ss_dssp CEEEECSSSCCEESCSSCCSCSSSCC
T ss_pred eeeeEecccceECCCcccccccccCc
Confidence 3456777777766665544 777776
No 33
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=21.84 E-value=1.1e+02 Score=16.79 Aligned_cols=15 Identities=7% Similarity=0.428 Sum_probs=11.3
Q ss_pred HHHHHhhcCCCCCCC
Q 025922 77 SYFSVVLTDAGSVPP 91 (246)
Q Consensus 77 ~~~~~~~~dPG~vp~ 91 (246)
.++...++||-.+++
T Consensus 17 iFFAI~FRePPri~~ 31 (32)
T 3arc_T 17 FFFAIFFREPPRITK 31 (32)
T ss_dssp HHHHHHTSCCCCCC-
T ss_pred HHHhhhhcCCCCCCC
Confidence 367888999988864
No 34
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=21.55 E-value=61 Score=19.20 Aligned_cols=24 Identities=21% Similarity=0.762 Sum_probs=17.6
Q ss_pred CCceeccccCcccCCCCccccccCc
Q 025922 122 PRIRYCRKCNQLKPPRCHHCSVCGR 146 (246)
Q Consensus 122 ~~~~~C~~C~~~kP~Rs~HC~~C~~ 146 (246)
..+.+|+.|+..-. ....|+.|+.
T Consensus 12 ~~pt~C~~C~~~l~-qG~~C~~C~~ 35 (52)
T 1faq_A 12 LKLAFCDICQKFLL-NGFRCQTCGY 35 (52)
T ss_dssp SSCEECTTSSSEEC-SEEECTTTTC
T ss_pred CCCcCCCCcccccc-cCCEeCCCCC
Confidence 34689999986433 6778888873
No 35
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Probab=20.61 E-value=23 Score=19.59 Aligned_cols=8 Identities=38% Similarity=1.319 Sum_probs=5.8
Q ss_pred ccccccCc
Q 025922 139 HHCSVCGR 146 (246)
Q Consensus 139 ~HC~~C~~ 146 (246)
.||+.|++
T Consensus 10 qhcrfckk 17 (37)
T 2elu_A 10 QHCRFCKK 17 (37)
T ss_dssp CEETTTTE
T ss_pred HHHHHHHH
Confidence 57887775
Done!