Query 025925
Match_columns 246
No_of_seqs 227 out of 1256
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 11:07:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025925.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025925hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06966 DUF1295: Protein of u 100.0 3.2E-60 7E-65 416.3 21.8 222 25-246 2-233 (235)
2 COG3752 Steroid 5-alpha reduct 100.0 1.9E-59 4.2E-64 404.7 23.6 237 7-246 13-257 (272)
3 KOG4650 Predicted steroid redu 100.0 1.5E-48 3.2E-53 336.4 16.3 238 6-246 6-287 (311)
4 PF01222 ERG4_ERG24: Ergostero 99.7 8E-18 1.7E-22 159.4 9.2 146 92-245 259-420 (432)
5 KOG1435 Sterol reductase/lamin 99.6 5.6E-16 1.2E-20 143.8 4.0 150 88-245 249-416 (428)
6 COG2020 STE14 Putative protein 99.6 2.6E-14 5.6E-19 121.6 12.3 106 134-246 66-176 (187)
7 PF04191 PEMT: Phospholipid me 99.5 3E-13 6.5E-18 103.9 10.6 97 137-240 2-104 (106)
8 KOG1638 Steroid reductase [Lip 99.4 1.5E-12 3.2E-17 113.1 11.6 102 136-244 147-248 (257)
9 PF04140 ICMT: Isoprenylcystei 99.4 2.3E-12 5E-17 98.1 8.5 86 143-236 3-93 (94)
10 PF02544 Steroid_dh: 3-oxo-5-a 99.2 9.2E-11 2E-15 96.4 10.1 67 135-201 39-105 (150)
11 PLN02392 probable steroid redu 99.2 1.2E-10 2.6E-15 103.5 10.9 65 136-201 150-214 (260)
12 KOG2628 Farnesyl cysteine-carb 99.1 7.3E-11 1.6E-15 99.6 4.9 100 140-246 85-191 (201)
13 COG1755 Uncharacterized protei 99.1 5.6E-10 1.2E-14 92.0 9.7 97 133-238 66-168 (172)
14 PLN02560 enoyl-CoA reductase 99.1 5E-09 1.1E-13 95.7 16.4 66 136-201 192-258 (308)
15 PLN03164 3-oxo-5-alpha-steroid 99.0 4E-09 8.6E-14 96.0 10.8 67 135-201 208-276 (323)
16 KOG1639 Steroid reductase requ 97.8 0.0002 4.4E-09 63.0 9.8 115 79-200 130-252 (297)
17 KOG1640 Predicted steroid redu 97.7 0.00028 6E-09 63.4 9.4 64 136-199 192-257 (304)
18 PF07298 NnrU: NnrU protein; 91.7 1.3 2.8E-05 37.9 8.6 46 135-194 67-112 (191)
19 PLN02797 phosphatidyl-N-dimeth 74.1 8.8 0.00019 31.8 5.4 62 139-200 67-132 (164)
20 COG3162 Predicted membrane pro 42.7 1.6E+02 0.0034 22.8 8.1 63 91-154 12-80 (102)
21 PRK07419 1,4-dihydroxy-2-napht 41.6 77 0.0017 29.0 6.2 25 172-198 134-158 (304)
22 PF03818 MadM: Malonate/sodium 39.0 59 0.0013 22.6 3.8 52 3-57 6-57 (60)
23 COG4094 Predicted membrane pro 33.9 56 0.0012 28.4 3.7 24 172-195 98-121 (219)
24 KOG4142 Phospholipid methyltra 29.9 78 0.0017 26.7 3.8 64 137-200 97-165 (208)
25 TIGR02235 menA_cyano-plnt 1,4- 28.7 1.4E+02 0.003 27.0 5.6 25 172-198 121-145 (285)
26 PF06011 TRP: Transient recept 27.1 5.5E+02 0.012 24.4 16.2 41 74-114 175-215 (438)
27 PF15113 TMEM117: TMEM117 prot 26.9 1.2E+02 0.0026 28.7 4.8 59 56-115 60-118 (415)
28 PF05653 Mg_trans_NIPA: Magnes 26.3 1.7E+02 0.0036 26.7 5.7 58 138-202 5-63 (300)
29 TIGR00751 menA 1,4-dihydroxy-2 25.6 1.9E+02 0.0041 26.1 5.9 23 174-198 126-148 (284)
30 PRK13387 1,4-dihydroxy-2-napht 24.5 2E+02 0.0044 26.3 6.0 21 172-194 129-149 (317)
31 PLN02922 prenyltransferase 22.7 1.6E+02 0.0034 27.1 4.9 24 173-198 139-162 (315)
32 PRK02971 4-amino-4-deoxy-L-ara 22.2 2.8E+02 0.0061 21.9 5.7 61 11-71 51-114 (129)
33 KOG1582 UDP-galactose transpor 21.5 1.1E+02 0.0025 28.1 3.6 41 9-49 44-84 (367)
34 PF09124 Endonuc-dimeris: T4 r 21.3 65 0.0014 22.0 1.5 12 183-194 2-13 (54)
35 COG1575 MenA 1,4-dihydroxy-2-n 21.3 6.5E+02 0.014 23.2 15.8 27 171-199 135-161 (303)
36 COG2510 Predicted membrane pro 21.0 4.6E+02 0.01 21.3 7.9 56 16-71 75-131 (140)
37 PRK12874 ubiA prenyltransferas 20.4 5E+02 0.011 23.3 7.6 53 23-75 128-181 (291)
No 1
>PF06966 DUF1295: Protein of unknown function (DUF1295); InterPro: IPR010721 This family contains a number of bacterial and eukaryotic proteins of unknown function that are approximately 300 residues long.
Probab=100.00 E-value=3.2e-60 Score=416.28 Aligned_cols=222 Identities=42% Similarity=0.893 Sum_probs=203.9
Q ss_pred HHHHHHhccCeEeecccccHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhHHHHHhhhCcccchhHHHHHHhhh--
Q 025925 25 FVITALFKFDKVTDFAGSTNFIIIALLTLILKGSWHFRQVVLTFLAVVWGLRLALFLLMRILNWGEDRRFDEMRSNLG-- 102 (246)
Q Consensus 25 ~~~~~~~~~~~~~D~~w~~~~~~~a~~~~~~~~~~~~r~~l~~~l~~~W~~RL~~~l~~R~~~~~eD~Ry~~~r~~~~-- 102 (246)
|+++..+||++++|+.||++++++++.++..+++.+.|++++++++++||+||+.|+++|..+++||+||+++|++++
T Consensus 2 w~~s~~~~n~s~vD~~ws~~~~~~a~~~~~~~~~~~~r~~lv~~lv~~W~~RL~~~l~~R~~~~~eD~R~~~~r~~~~~~ 81 (235)
T PF06966_consen 2 WIISLATRNESIVDILWSFGFVLVAWVYALFSDGFSPRQLLVAALVIVWGLRLGYFLFRRNLGWGEDWRYDDLRKKWGEW 81 (235)
T ss_pred eeehHhhCCCCEEECcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHhcCcc
Confidence 678999999999999999999999999988888889999999999999999999999999988899999999999863
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcccccccc
Q 025925 103 ----KLAIFWIFQAVWVWTVSLPVTVVNASDRDPSVQAVDVIGWIMWSVGVSIEAIADQQKLSFKNSPENRGKWCNVGFW 178 (246)
Q Consensus 103 ----~~~~~~~~Q~~~~~~~~lP~~~~~~~~~~~~l~~~~~~g~~l~~~g~~le~~ad~q~~~f~~~~~~~g~li~~Glw 178 (246)
+++.+|++|+++++++++|+++++..+++++++..|++|++++++|+++|++||.||.+||++|+|+||+|++|+|
T Consensus 82 ~~~~~~~~~~~~q~~~~~~~~lP~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~E~~AD~Q~~~fk~~~~n~g~~~~~GLw 161 (235)
T PF06966_consen 82 FWPFSFFFIFLFQALLVWLISLPVYLANSSPPNPPLNWLDILGIALFLIGFLLETVADQQKYRFKKDPANKGKFCTTGLW 161 (235)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCccccCCee
Confidence 5678899999999999999999876555667899999999999999999999999999999999999999999999
Q ss_pred ccccCcchHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHhhCchHHHHHh-ccC---cCcccccC
Q 025925 179 KYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILGPIFLTLLLLFISGIPLLEVCL-SYY---THARAYIL 246 (246)
Q Consensus 179 ~~sRHPNYfge~l~w~g~~l~~~~~~~~~~~~~~i~p~~~~~ll~~~sgi~~~E~~~-~ky---~~Y~~Y~~ 246 (246)
+||||||||||+++|+|+++++.+...+..++++++|+++++++.++||+|..||++ +|| |+|+||+.
T Consensus 162 ~~sRHPNYfGE~l~W~g~~~~a~~~~~~~~~~~~~~pl~~~~~l~~~sgip~~E~~~~~kyg~~~~Y~~Y~~ 233 (235)
T PF06966_consen 162 RYSRHPNYFGEILFWWGIYLAAISSGSGWLWWAIIGPLFMTLLLLFVSGIPLLEKRMAKKYGDRPAYQEYQR 233 (235)
T ss_pred eeeeCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHhcCCCHhHHHHHh
Confidence 999999999999999999999987644445678899999999999999999999875 668 78999974
No 2
>COG3752 Steroid 5-alpha reductase family enzyme [General function prediction only]
Probab=100.00 E-value=1.9e-59 Score=404.65 Aligned_cols=237 Identities=30% Similarity=0.536 Sum_probs=212.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccCeEeecccccHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhHHHHHhhh
Q 025925 7 SHFLALTAIVTVGYQLLFFVITALFKFDKVTDFAGSTNFIIIALLTLILKGSWHFRQVVLTFLAVVWGLRLALFLLMRIL 86 (246)
Q Consensus 7 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~w~~~~~~~a~~~~~~~~~~~~r~~l~~~l~~~W~~RL~~~l~~R~~ 86 (246)
..+....+++.++.+.+.|++|..+||.++||..||.++++.++..+..+.+.+.|+++++.++++||+||+.|+.+|.+
T Consensus 13 ~~~~~v~al~~~v~~~~~w~vs~~tg~~~~VD~~Wg~~~~~~a~~~~l~~~~~~~r~~l~~~LvtlWs~RL~~hl~rR~~ 92 (272)
T COG3752 13 LMVIVVVALALAVLFAVAWAVSRRTGNYSWVDAVWGGGFVAVAVVLALLGEGDPRRRWLLLFLVTLWSLRLGWHLYRRTR 92 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCcceeehhccchHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34556677777888899999999999999999999999999999888888887789999999999999999999999999
Q ss_pred CcccchhHHHHHHhhhH-------HHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 025925 87 NWGEDRRFDEMRSNLGK-------LAIFWIFQAVWVWTVSLPVTVVNASDRDPSVQAVDVIGWIMWSVGVSIEAIADQQK 159 (246)
Q Consensus 87 ~~~eD~Ry~~~r~~~~~-------~~~~~~~Q~~~~~~~~lP~~~~~~~~~~~~l~~~~~~g~~l~~~g~~le~~ad~q~ 159 (246)
++|||+||.++|+++++ ++.++.+|+++.+++++|+++++.. .++++.++|++|++++++|+.+|..+|.|+
T Consensus 93 ~~geD~RY~~l~~~wg~t~~~~~~l~~vf~lQ~ll~~ilalpi~~a~~~-~~~~~~~~d~~g~~iwivg~~fE~lgD~QL 171 (272)
T COG3752 93 GKGEDPRYVNLRQRWGKTIYPLKALFIVFGLQALLLFILALPIYLAALN-GPREFGWWDVIGLAIWIVGIVFEALGDAQL 171 (272)
T ss_pred CCCCChHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCcHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 99999999999997753 5677899999999999999998765 355789999999999999999999999999
Q ss_pred HHhccCCCCCCccccccccccccCcchHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHhhCch-HHHHHhccC
Q 025925 160 LSFKNSPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILGPIFLTLLLLFISGIP-LLEVCLSYY 238 (246)
Q Consensus 160 ~~f~~~~~~~g~li~~Glw~~sRHPNYfge~l~w~g~~l~~~~~~~~~~~~~~i~p~~~~~ll~~~sgi~-~~E~~~~ky 238 (246)
..||++|+||||+|++|+||+|||||||||.++|+|+++++.+- ....|+..+|++|+.++.++||+| +|||+.+..
T Consensus 172 ~~Fk~~P~nkgkll~~GLWr~tRHPNYFgE~l~Wwg~~Lia~~~--~~~~W~~~sPllmt~LL~~vSGvp~l~ekm~k~r 249 (272)
T COG3752 172 WVFKKDPRNKGKLLDTGLWRWTRHPNYFGEALVWWGFYLIAISE--WLLLWAVASPLLMTWLLVHVSGVPPLEEKMLKSR 249 (272)
T ss_pred HHHHhChhhccccccccceecccCcchHHHHHHHHHHHHHHHhh--hhHhhhcccHHHHHHHHHHhcCCChHHHHHhccc
Confidence 99999999999999999999999999999999999999998742 223346689999999999999999 777766545
Q ss_pred cCcccccC
Q 025925 239 THARAYIL 246 (246)
Q Consensus 239 ~~Y~~Y~~ 246 (246)
|+|+|||.
T Consensus 250 ~~fr~Yq~ 257 (272)
T COG3752 250 PGFREYQR 257 (272)
T ss_pred HhHHHHHH
Confidence 99999984
No 3
>KOG4650 consensus Predicted steroid reductase [General function prediction only]
Probab=100.00 E-value=1.5e-48 Score=336.43 Aligned_cols=238 Identities=60% Similarity=1.070 Sum_probs=201.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhccCeEee-cccccHHHHHHHHHHHHh----------CC----------------
Q 025925 6 DSHFLALTAIVTVGYQLLFFVITALFKFDKVTD-FAGSTNFIIIALLTLILK----------GS---------------- 58 (246)
Q Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~D-~~w~~~~~~~a~~~~~~~----------~~---------------- 58 (246)
+++......++....|.++|.+-...|.++.-| .+.+..|++.+++++..+ ..
T Consensus 6 ~s~~a~~~vav~~~l~~i~f~~t~l~~~~~~tD~~ant~~Fvi~~vLt~vlgl~~~s~w~~d~~W~ilp~~~~~~f~~~~ 85 (311)
T KOG4650|consen 6 ASDAAKWKVAVSVYLQFIFFVITALFKFDQVTDFFANTTNFVILAVLTLVLGLWGVSVWTKDRLWHILPTAFSLHFLFYG 85 (311)
T ss_pred cCchhceeeeeeccHHHHHHHHHHHhccchHHHHHcCCchHHHHHHHHHHHHhccccceecccceeechHHHHHHHhhcc
Confidence 344455556667778889999999999999999 677777888888776641 11
Q ss_pred ----chhHHHHHHHHHHHHHHHHhHHHHHh-hhCcc-cchhHHHHHHhhhH------HHHHHHHHHHHHHHHHHHHHHHh
Q 025925 59 ----WHFRQVVLTFLAVVWGLRLALFLLMR-ILNWG-EDRRFDEMRSNLGK------LAIFWIFQAVWVWTVSLPVTVVN 126 (246)
Q Consensus 59 ----~~~r~~l~~~l~~~W~~RL~~~l~~R-~~~~~-eD~Ry~~~r~~~~~------~~~~~~~Q~~~~~~~~lP~~~~~ 126 (246)
.+.|+.+++.++++|++||++|.++| ++++| ||+||+++|++.++ ++.+|.+|+++++.+++|+|+++
T Consensus 86 l~n~~~~R~mIl~~L~~vWs~RLt~ny~rr~~~~wG~ED~Rf~d~R~~~gK~~~~~~~f~~~ifQ~v~l~~v~lPlyiv~ 165 (311)
T KOG4650|consen 86 LYNIASRRQMILTFLVVVWSLRLTYNYLRRGILQWGAEDRRFDDVRQNIGKWIYLFHLFYFWIFQAVWLWTVSLPLYIVN 165 (311)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCchhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhcchheee
Confidence 23599999999999999999999999 68888 99999999999987 67889999999999999999998
Q ss_pred hCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCCCCCCc-cccccccccccCcchHHHHHHHHHHHHhhcC
Q 025925 127 ASDRDPSVQAVDVIGWIMWSVGVSIEAIADQQKLSFK---NSPENRGK-WCNVGFWKYSRHPNYFGEIFLWWGIFVASTP 202 (246)
Q Consensus 127 ~~~~~~~l~~~~~~g~~l~~~g~~le~~ad~q~~~f~---~~~~~~g~-li~~Glw~~sRHPNYfge~l~w~g~~l~~~~ 202 (246)
.+..+..++++|++|..++++|+++|..||.||..|+ .++++.|| .|++|+|||||||||+||++.|+|+++++.+
T Consensus 166 ~~d~~r~f~~wD~I~~~m~~~gfvie~~ADqQ~~~f~~~~~~l~~~Gk~~~d~GlwrySRHPNylgEqL~Wwglyvfa~~ 245 (311)
T KOG4650|consen 166 ASDGGRAFGPWDVIGWTMWVFGFVIEALADQQKLSFKEARYDLENLGKGWCDVGLWRYSRHPNYLGEQLLWWGLYVFAAP 245 (311)
T ss_pred ecCCccccChHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhcCHHHcCCccccccceeeccCccHHHHHHHHHHHHHHHhh
Confidence 7654446899999999999999999999999999998 55677888 9999999999999999999999999999988
Q ss_pred CCCchhHHHHHHHHHHHHHHHHhhCchHHHHH-hccCcCcccccC
Q 025925 203 VLDGAEWLVILGPIFLTLLLLFISGIPLLEVC-LSYYTHARAYIL 246 (246)
Q Consensus 203 ~~~~~~~~~~i~p~~~~~ll~~~sgi~~~E~~-~~ky~~Y~~Y~~ 246 (246)
...|..|..+.+|.+.++++.+.+ ..|+. .+|||.|+.||+
T Consensus 246 ~~egl~wtvi~~lv~~~~l~~~t~---lie~~~v~~~~aYR~Yqk 287 (311)
T KOG4650|consen 246 VLEGLEWTVIAGLVFLTLLLLFTS---LIELLEVEKYPAYRVYQK 287 (311)
T ss_pred hhccchHHHHHHHHHHHHHHHHHh---hhhhhhhhhhHHHHHHHh
Confidence 777766777788888887777765 44664 367889999974
No 4
>PF01222 ERG4_ERG24: Ergosterol biosynthesis ERG4/ERG24 family; InterPro: IPR001171 The two fungal enzymes, C-14 sterol reductase (gene ERG24 in budding yeast and erg3 in Neurospora crassa) and C-24(28) sterol reductase (gene ERG4 in budding yeast and sts1 in fission yeast), are involved in ergosterol biosynthesis. They act by reducing double bonds in precursors of ergosterol []. These proteins are highly hydrophobic and seem to contain seven or eight transmembrane regions. Chicken lamin B receptor that is thought to anchor the lamina to the inner nuclear membrane belongs to this family.; GO: 0016020 membrane
Probab=99.73 E-value=8e-18 Score=159.42 Aligned_cols=146 Identities=23% Similarity=0.283 Sum_probs=105.4
Q ss_pred hhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcHH-HHHH-HHHHHHHHHHHHHHHHHHHHhccCCC--
Q 025925 92 RRFDEMRSNLGKLAIFWIFQAVWVWTVSLPVTVVNASDRDPSVQAV-DVIG-WIMWSVGVSIEAIADQQKLSFKNSPE-- 167 (246)
Q Consensus 92 ~Ry~~~r~~~~~~~~~~~~Q~~~~~~~~lP~~~~~~~~~~~~l~~~-~~~g-~~l~~~g~~le~~ad~q~~~f~~~~~-- 167 (246)
..+|...+++|-...++.+-.+....++.+.|++.+ | .++++. ..++ .++.++|+.+...||.||.+||++|+
T Consensus 259 ~t~Di~~d~fGfml~~g~l~~vPf~Yt~~~~yl~~~-p--~~l~~~~~~~~i~~l~~~gy~i~r~sn~QK~~FR~~p~~p 335 (432)
T PF01222_consen 259 TTMDITHDGFGFMLCFGDLVWVPFTYTLQARYLVDH-P--VELSWPTYAAAILALGLVGYYIFRGSNSQKNRFRRNPKDP 335 (432)
T ss_pred eeeeeeEcCccceeehhhHhhhhHhhhcceeEEEeC-C--ccCCcHHHHHHHHHHHHHHHHHHHHhchhHHHhcCCCCCC
Confidence 456677777775544444444444444444444443 2 245555 2344 45678999999999999999997652
Q ss_pred ----------CC-CccccccccccccCcchHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHhhCchHHHHHhc
Q 025925 168 ----------NR-GKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILGPIFLTLLLLFISGIPLLEVCLS 236 (246)
Q Consensus 168 ----------~~-g~li~~Glw~~sRHPNYfge~l~w~g~~l~~~~~~~~~~~~~~i~p~~~~~ll~~~sgi~~~E~~~~ 236 (246)
++ +|+++||.|+++|||||+||+++-+++++.|.- + .......|++++.++.+++ .|+|||+.+
T Consensus 336 ~~~~~~~~~t~~G~~LL~SGwWg~~Rh~NY~gdil~a~aw~l~~gf---~-~~~pyfy~~~~~~lL~hR~-~RD~~rC~~ 410 (432)
T PF01222_consen 336 KVIHLKYIPTKRGSKLLVSGWWGIARHPNYLGDILMALAWCLPCGF---S-SILPYFYPIFFTILLIHRA-RRDEERCRK 410 (432)
T ss_pred cccccceeecCCCCeEEEcChhHhhcccchHHHHHHHHHHHHHHhc---C-ccHHHHHHHHHHHHHhhhH-HHHHHHHHH
Confidence 23 379999999999999999999999999887642 1 2345678888888888876 889999999
Q ss_pred cCc-Cccccc
Q 025925 237 YYT-HARAYI 245 (246)
Q Consensus 237 ky~-~Y~~Y~ 245 (246)
||+ ++++|+
T Consensus 411 KYG~~W~~Yc 420 (432)
T PF01222_consen 411 KYGKDWDEYC 420 (432)
T ss_pred hhCHHHHHHH
Confidence 987 688886
No 5
>KOG1435 consensus Sterol reductase/lamin B receptor [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=99.59 E-value=5.6e-16 Score=143.81 Aligned_cols=150 Identities=24% Similarity=0.340 Sum_probs=102.7
Q ss_pred cccc---hhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Q 025925 88 WGED---RRFDEMRSNLGKLAIFWIFQAVWVWTVSLPVTVVNASDRDPSVQAVDVIGW-IMWSVGVSIEAIADQQKLSFK 163 (246)
Q Consensus 88 ~~eD---~Ry~~~r~~~~~~~~~~~~Q~~~~~~~~lP~~~~~~~~~~~~l~~~~~~g~-~l~~~g~~le~~ad~q~~~f~ 163 (246)
++|| ..+|.-++.+|-+..++-+-.+.....+.-.|+..+ +.++++....++ ++.++|+.+...||.||.+||
T Consensus 249 w~E~~~l~TmDi~hd~FGfmL~fgd~v~vP~~Yt~~~~yL~~h---pv~l~~~~a~~i~~l~l~gyyifr~an~QK~~FR 325 (428)
T KOG1435|consen 249 WNEELVLTTMDIAHDGFGFMLIFGDLVWVPFTYTLQALYLVSH---PVELGWPMAVGILVLLLLGYYIFRGANAQKNEFR 325 (428)
T ss_pred hhhhhhcchhhhhccCcceeeeehhhcccceeeecceeeEEEC---ccccchHHHHHHHHHHHhheeEeeccchhHHHHh
Confidence 4565 345555666664444443333333222222333433 235666655554 467889999999999999999
Q ss_pred cCC-------------CCCCccccccccccccCcchHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHhhCchH
Q 025925 164 NSP-------------ENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILGPIFLTLLLLFISGIPL 230 (246)
Q Consensus 164 ~~~-------------~~~g~li~~Glw~~sRHPNYfge~l~w~g~~l~~~~~~~~~~~~~~i~p~~~~~ll~~~sgi~~ 230 (246)
++| .+.+|+++||.|+++|||||+||++.-+++++.+.- ++ .+....|+++++++.++. .|+
T Consensus 326 kn~~~~~~~~i~~i~t~~Gs~LL~SGwWG~aRh~nY~gD~i~alawslp~gf---~s-~lpyfy~iyf~~LLvhR~-~RD 400 (428)
T KOG1435|consen 326 KNPGDPKLKNIKTIYTSTGSKLLVSGWWGVARHPNYLGDLIMALAWSLPCGF---NS-PLPYFYPIYFTLLLVHRA-ARD 400 (428)
T ss_pred cCCCCCccccccceEeccCCeEEeechhhhhcCcCcHHHHHHHHHHHHhccC---CC-CcchHHHHHHHHHHHHHH-hhh
Confidence 874 234589999999999999999999999999887642 22 234466888877777765 677
Q ss_pred HHHHhccCc-Cccccc
Q 025925 231 LEVCLSYYT-HARAYI 245 (246)
Q Consensus 231 ~E~~~~ky~-~Y~~Y~ 245 (246)
|.|+.+||+ +++||.
T Consensus 401 e~rC~~KYG~~W~~Yc 416 (428)
T KOG1435|consen 401 EHRCRSKYGEDWEEYC 416 (428)
T ss_pred HHHHHHHHhhhHHHHH
Confidence 778899987 577775
No 6
>COG2020 STE14 Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=2.6e-14 Score=121.60 Aligned_cols=106 Identities=19% Similarity=0.275 Sum_probs=79.0
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---CCCCCccccccccccccCcchHHHHHHHHHHHHhhcCCCCchhHH
Q 025925 134 VQAVDVIGWIMWSVGVSIEAIADQQKLSFKNS---PENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWL 210 (246)
Q Consensus 134 l~~~~~~g~~l~~~g~~le~~ad~q~~~f~~~---~~~~g~li~~Glw~~sRHPNYfge~l~w~g~~l~~~~~~~~~~~~ 210 (246)
..+...+|..+..+|..+..++..++.+..+. ++++++++++|+|+++|||.|+|.++..+|..+... +.|.
T Consensus 66 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVttG~Y~~VRHP~Y~~~~l~~~g~~~~~~-----~~~~ 140 (187)
T COG2020 66 PSWIVGLGLLLVGLGLALRLWAMRTLGRSWTVSVKARKGHELVTTGPYSIVRHPIYLGLLLFALGTGLLLG-----SLWA 140 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccCCCCCCeeEecCCcceecCcHHHHHHHHHHHHHHHHH-----hHHH
Confidence 45678899999999999999999999887432 244568999999999999999999999999986542 2333
Q ss_pred HHHHHHHHHHHHHHhhCchHHHHHh-ccCcC-cccccC
Q 025925 211 VILGPIFLTLLLLFISGIPLLEVCL-SYYTH-ARAYIL 246 (246)
Q Consensus 211 ~~i~p~~~~~ll~~~sgi~~~E~~~-~ky~~-Y~~Y~~ 246 (246)
.++..++...+..+. ++.|||.+ +|++| |+||+.
T Consensus 141 l~~~~~~~~~~~~~~--i~~EEr~L~~~fg~~Y~~Y~~ 176 (187)
T COG2020 141 LLIFVVLVALLFLFR--IREEERYLRAEFGDEYREYRK 176 (187)
T ss_pred HHHHHHHHHHHHHHH--hhHHHHHHHHHhhHHHHHHHH
Confidence 333333332222333 78999986 56776 999974
No 7
>PF04191 PEMT: Phospholipid methyltransferase ; InterPro: IPR007318 The Saccharomyces cerevisiae (Baker's yeast) phospholipid methyltransferase (2.1.1.16 from EC) has a broad substrate specificity of unsaturated phospholipids [].; GO: 0008170 N-methyltransferase activity, 0006644 phospholipid metabolic process
Probab=99.49 E-value=3e-13 Score=103.95 Aligned_cols=97 Identities=22% Similarity=0.314 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccC---C--CCCCccccccccccccCcchHHHHHHHHHHHHhhcCCCCchhHHH
Q 025925 137 VDVIGWIMWSVGVSIEAIADQQKLSFKNS---P--ENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLV 211 (246)
Q Consensus 137 ~~~~g~~l~~~g~~le~~ad~q~~~f~~~---~--~~~g~li~~Glw~~sRHPNYfge~l~w~g~~l~~~~~~~~~~~~~ 211 (246)
..++|.++.++|..+...+-.++.+.++. + +++++++++|+||++|||.|+|.++.++|.++...+ .+..
T Consensus 2 ~~~~G~~l~~~g~~l~~~~~~~l~~~~~~~~~~~~~~~~~Lvt~G~Y~~vRhPmY~g~~l~~~G~~l~~~s-----~~~l 76 (106)
T PF04191_consen 2 RFVLGLLLILAGIALAIWAFKALGRFGTYYGDFFGREPQRLVTTGPYRYVRHPMYLGFLLILLGIALMLGS-----WLGL 76 (106)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcCeecCCcccccCCcccccCCccCcCChHHHHHHHHHHHHHHHhCc-----HHHH
Confidence 45789999999999999999888877653 1 345679999999999999999999999999987532 2222
Q ss_pred HHHHHHHHHHHHHhhCchHHHHHh-ccCcC
Q 025925 212 ILGPIFLTLLLLFISGIPLLEVCL-SYYTH 240 (246)
Q Consensus 212 ~i~p~~~~~ll~~~sgi~~~E~~~-~ky~~ 240 (246)
++.++.. . ......++.||+.+ ++|+|
T Consensus 77 ~~~~~~~-~-~~~~~~~~~EE~~L~~~fG~ 104 (106)
T PF04191_consen 77 LLAVLAF-L-LYYIFIIRFEERFLERRFGE 104 (106)
T ss_pred HHHHHHH-H-HHHHHHHHhHHHHHHHHhCc
Confidence 2333322 2 22222256899876 45764
No 8
>KOG1638 consensus Steroid reductase [Lipid transport and metabolism]
Probab=99.43 E-value=1.5e-12 Score=113.06 Aligned_cols=102 Identities=24% Similarity=0.306 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccccccccCcchHHHHHHHHHHHHhhcCCCCchhHHHHHHH
Q 025925 136 AVDVIGWIMWSVGVSIEAIADQQKLSFKNSPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILGP 215 (246)
Q Consensus 136 ~~~~~g~~l~~~g~~le~~ad~q~~~f~~~~~~~g~li~~Glw~~sRHPNYfge~l~w~g~~l~~~~~~~~~~~~~~i~p 215 (246)
+...+|..+++.|+.++..+|.-+.+.|++.+++-|+.+.|+|.|+-+||||||++.|+|+++.+.+ +-+ ++-
T Consensus 147 ~r~liG~~lfv~Gm~iN~~sD~iL~~LRk~~~~~YkIP~GglFeyVsCPNYfgEiieW~Gyal~~ws------~p~-~aF 219 (257)
T KOG1638|consen 147 IRFLIGVVLFVTGMLINIYSDNILRTLRKPGGKGYKIPRGGLFEYVSCPNYFGEIIEWIGYALASWS------LPA-LAF 219 (257)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHhhcCCCCceecCCCceEEEeecchHHHHHHHHHHHHHHhhh------HHH-HHH
Confidence 4779999999999999999999999999875555689999999999999999999999999998643 111 122
Q ss_pred HHHHHHHHHhhCchHHHHHhccCcCcccc
Q 025925 216 IFLTLLLLFISGIPLLEVCLSYYTHARAY 244 (246)
Q Consensus 216 ~~~~~ll~~~sgi~~~E~~~~ky~~Y~~Y 244 (246)
++.+++.+.-......+-+.+|+|||+.-
T Consensus 220 a~ft~~~l~pRA~ahH~WY~~kFe~YPk~ 248 (257)
T KOG1638|consen 220 AFFTICNLGPRAYAHHKWYLKKFEDYPKN 248 (257)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhhccCCcc
Confidence 22222222211112223357888888764
No 9
>PF04140 ICMT: Isoprenylcysteine carboxyl methyltransferase (ICMT) family ; InterPro: IPR007269 The isoprenylcysteine o-methyltransferase (2.1.1.100 from EC) carries out carboyxl methylation of cleaved eukaryotic proteins that terminate in a CaaX motif. In Saccharomyces cerevisiae (Baker's yeast) this methylation is carried out by Ste14p, an integral endoplasmic reticulum membrane protein. Ste14p is the founding member of the isoprenylcysteine carboxyl methyltransferase (ICMT) family, whose members share significant sequence homology [].; GO: 0004671 protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity, 0006481 C-terminal protein methylation, 0016021 integral to membrane; PDB: 4A2N_B.
Probab=99.37 E-value=2.3e-12 Score=98.08 Aligned_cols=86 Identities=23% Similarity=0.298 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCC---CCCCccccccccccccCcchHHHHHHHHHHHHhhcCCCCchhHH-HHH-HHHH
Q 025925 143 IMWSVGVSIEAIADQQKLSFKNSP---ENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWL-VIL-GPIF 217 (246)
Q Consensus 143 ~l~~~g~~le~~ad~q~~~f~~~~---~~~g~li~~Glw~~sRHPNYfge~l~w~g~~l~~~~~~~~~~~~-~~i-~p~~ 217 (246)
+++++|..+..+|-.++.++-+.. .++++++|+|+||++|||||+|.++..+|......+ .|. +++ .++.
T Consensus 3 ~~~i~g~~lr~~a~~~LG~~ft~~v~~~~~h~lVt~GpY~~vRHP~Y~g~~~~~~~~~~ll~~-----~~~~~~~~~~~~ 77 (94)
T PF04140_consen 3 GLFIAGQLLRYWAIRTLGRYFTHRVIIQPGHKLVTSGPYRYVRHPSYLGNIIWELGGQLLLFN-----AWLTALILFALV 77 (94)
T ss_dssp --HHHHHHHHHHHHHHHGGG--SS--EETT-----SSTTTTBSSHHHHH-HHHHHHHHHHHHT------HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHccccCcEEEEecCCCEEecccccccccCchHHHHHHHHHHHHHHHHh-----HHHHHHHHHHHH
Confidence 457889999999999998765532 345689999999999999999977666666554332 222 222 2222
Q ss_pred HHHHHHHhhCchHHHHHhc
Q 025925 218 LTLLLLFISGIPLLEVCLS 236 (246)
Q Consensus 218 ~~~ll~~~sgi~~~E~~~~ 236 (246)
.. ..+ ..|+.|||.+.
T Consensus 78 ~~--~l~-~RI~~EE~~L~ 93 (94)
T PF04140_consen 78 AW--LLF-VRIREEERALI 93 (94)
T ss_dssp HH--HHH-HHHHHHHHHHH
T ss_pred HH--HHH-HHHHHHHHHhc
Confidence 22 222 23899999764
No 10
>PF02544 Steroid_dh: 3-oxo-5-alpha-steroid 4-dehydrogenase ; InterPro: IPR001104 Synonym(s): Steroid 5-alpha-reductase 3-oxo-5-alpha-steroid 4-dehydrogenases, 1.3.99.5 from EC catalyse the conversion of 3-oxo-5-alpha-steroid + acceptor to 3-oxo-delta(4)-steroid + reduced acceptor. The steroid 5-alpha-reductase enzyme is responsible for the formation of dihydrotestosterone, this hormone promotes the differentiation of male external genitalia and the prostate during foetal development []. In humans mutations in this enzyme can cause a form of male pseudohermaphorditism in which the external genitalia and prostate fail to develop normally. A related steroid reductase enzyme, DET2, is found in plants such as Arabidopsis. Mutations in this enzyme cause defects in light-regulated development []. This domain is present in both type 1 and type 2 forms.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0006629 lipid metabolic process, 0005737 cytoplasm, 0016021 integral to membrane
Probab=99.21 E-value=9.2e-11 Score=96.42 Aligned_cols=67 Identities=19% Similarity=0.371 Sum_probs=60.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccccccccCcchHHHHHHHHHHHHhhc
Q 025925 135 QAVDVIGWIMWSVGVSIEAIADQQKLSFKNSPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVAST 201 (246)
Q Consensus 135 ~~~~~~g~~l~~~g~~le~~ad~q~~~f~~~~~~~g~li~~Glw~~sRHPNYfge~l~w~g~~l~~~ 201 (246)
++..++|++++++|...+..+|.++.+.|++.+++-++.+.|+|+++.+|||++|++.|.|+++++.
T Consensus 39 ~~~~~~g~~lf~~g~~~n~~~h~~L~~lr~~~~~~y~iP~gg~F~~vscP~Y~~Eil~w~~f~l~~~ 105 (150)
T PF02544_consen 39 SPRFIIGLALFLIGSIGNFYSHLILANLRKPGSKKYKIPKGGLFEYVSCPHYFFEILIWIGFALLTG 105 (150)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCceeCCCCCCcceeeehhhHHHHHHHHHHHHHHh
Confidence 3577999999999999999999999998876555557999999999999999999999999999864
No 11
>PLN02392 probable steroid reductase DET2
Probab=99.20 E-value=1.2e-10 Score=103.53 Aligned_cols=65 Identities=26% Similarity=0.376 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccccccccCcchHHHHHHHHHHHHhhc
Q 025925 136 AVDVIGWIMWSVGVSIEAIADQQKLSFKNSPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVAST 201 (246)
Q Consensus 136 ~~~~~g~~l~~~g~~le~~ad~q~~~f~~~~~~~g~li~~Glw~~sRHPNYfge~l~w~g~~l~~~ 201 (246)
+..++|++++++|..++..+|.++.+.|++. ++-++.+.|+|+++.+|||+||++.|+|+++++.
T Consensus 150 ~~~~iG~~lF~~g~~~N~~sh~~L~~LRk~g-~~Y~iP~GGlF~~VscPnYf~EileW~gfal~t~ 214 (260)
T PLN02392 150 WRFFGGLVVFLWGMRINVWSDRVLVGLKREG-GGYKVPRGGWFELVSCPNYFGEIVEWLGWAVMTW 214 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-CeeECCCCCCcCeEcCCcHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999753 4447899999999999999999999999999863
No 12
>KOG2628 consensus Farnesyl cysteine-carboxyl methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=7.3e-11 Score=99.56 Aligned_cols=100 Identities=19% Similarity=0.253 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh-----ccCCCCCCccccccccccccCcchHHHHHHHHHHHHhhcCCCCchhHHHHHH
Q 025925 140 IGWIMWSVGVSIEAIADQQKLSF-----KNSPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILG 214 (246)
Q Consensus 140 ~g~~l~~~g~~le~~ad~q~~~f-----~~~~~~~g~li~~Glw~~sRHPNYfge~l~w~g~~l~~~~~~~~~~~~~~i~ 214 (246)
.|..+..+|-+...+|..+..+. ++++..+++++++|+|+|+|||.|.|-.+.|.|..++-.+ .++++.
T Consensus 85 ~gl~~~~~Ge~~r~~amitag~~f~H~va~~k~~~h~lv~~GvY~y~RHPsY~g~flw~~gtq~~L~n------pis~v~ 158 (201)
T KOG2628|consen 85 LGLLMLILGEALRKIAMITAGTSFTHYVATKKVSDHKLVTSGVYAYVRHPSYVGFFLWAAGTQTMLCN------PISLVA 158 (201)
T ss_pred CceeeeehHHHHHHHHHHHHHHHHHHHHhhccccCceeEeccchhheeCchHHHHHHHHHHHHHHHhC------HHHHHH
Confidence 56666667777777766665443 2344556789999999999999999998888888776322 233333
Q ss_pred HHHHHHHHHHhhCchHHHHHhcc-C-cCcccccC
Q 025925 215 PIFLTLLLLFISGIPLLEVCLSY-Y-THARAYIL 246 (246)
Q Consensus 215 p~~~~~ll~~~sgi~~~E~~~~k-y-~~Y~~Y~~ 246 (246)
-+++. .-.+...|+.||+.+.+ + .+|.||++
T Consensus 159 f~~V~-w~ff~~Ri~~EE~~Li~fFg~~Y~eY~k 191 (201)
T KOG2628|consen 159 FLLVV-WRFFADRIKEEEKYLISFFGSSYVEYAK 191 (201)
T ss_pred HHHHH-HHHHhhhhhHHHHHHHHHhhHHHHHHHH
Confidence 33322 23444568899998866 4 58999874
No 13
>COG1755 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.10 E-value=5.6e-10 Score=91.95 Aligned_cols=97 Identities=21% Similarity=0.298 Sum_probs=76.1
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC---CCCCccccccccccccCcchHH-HHHHHHHHHHhhcCCCCchh
Q 025925 133 SVQAVDVIGWIMWSVGVSIEAIADQQKLSFKNSP---ENRGKWCNVGFWKYSRHPNYFG-EIFLWWGIFVASTPVLDGAE 208 (246)
Q Consensus 133 ~l~~~~~~g~~l~~~g~~le~~ad~q~~~f~~~~---~~~g~li~~Glw~~sRHPNYfg-e~l~w~g~~l~~~~~~~~~~ 208 (246)
..++..++|.+++++...+..++-.++.+..+.+ .++++.+++|+||+.||||||- -+..-.|+.+.+- .
T Consensus 66 ~f~~~~~~gl~~~l~s~~ll~~vi~~LG~iWttki~ilP~h~~v~sglfk~~kHPNYflnIipEligl~Ll~~------A 139 (172)
T COG1755 66 FFNWLSIIGLALLLFSQILLYWVIKSLGEIWTTKIMILPNHQIVRSGLFKTMKHPNYFLNIIPELIGLPLLCQ------A 139 (172)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHhhhheeeEEEeCCceeeccccchhccCCcHHHHHHHHHHHHHHHHH------H
Confidence 4667888999999999999999999999998874 3567899999999999999999 6667888888862 2
Q ss_pred HHH--HHHHHHHHHHHHHhhCchHHHHHhccC
Q 025925 209 WLV--ILGPIFLTLLLLFISGIPLLEVCLSYY 238 (246)
Q Consensus 209 ~~~--~i~p~~~~~ll~~~sgi~~~E~~~~ky 238 (246)
|.+ +.+|+. .+++++. |+.|||.+.++
T Consensus 140 ~~Ta~l~~p~y--a~~L~vR-Ir~EekaL~~~ 168 (172)
T COG1755 140 WYTALLFSPIY--ALLLYVR-IRQEEKALAEL 168 (172)
T ss_pred HHHHHHHHHHH--HHHHhhh-hhHHHHHHHHh
Confidence 433 446654 3445543 89999977653
No 14
>PLN02560 enoyl-CoA reductase
Probab=99.09 E-value=5e-09 Score=95.66 Aligned_cols=66 Identities=15% Similarity=0.169 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCCCCccccccccccccCcchHHHHHHHHHHHHhhc
Q 025925 136 AVDVIGWIMWSVGVSIEAIADQQKLSFKNS-PENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVAST 201 (246)
Q Consensus 136 ~~~~~g~~l~~~g~~le~~ad~q~~~f~~~-~~~~g~li~~Glw~~sRHPNYfge~l~w~g~~l~~~ 201 (246)
...++|++++++|...+..+|.++.+.|++ .+++-++...|+|+++-+|||++|++.|+|+++++.
T Consensus 192 ~~~~~g~~lf~~~~~~N~~~h~~L~~LR~~~g~~~y~IP~g~lF~~VscPnY~~Ei~~W~gf~~~t~ 258 (308)
T PLN02560 192 TQMKVGFGFGLVCQLANFYCHIILRNLRKPDGKGGYQIPRGFLFNYVTCANYTTEIYQWLGFNIATQ 258 (308)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeeCCCCCCcCeecCCcHHHHHHHHHHHHHHHc
Confidence 455899999999999999999999999975 333346889999999999999999999999999863
No 15
>PLN03164 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal domain containing protein; Provisional
Probab=98.98 E-value=4e-09 Score=96.00 Aligned_cols=67 Identities=16% Similarity=0.196 Sum_probs=58.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--CCCCccccccccccccCcchHHHHHHHHHHHHhhc
Q 025925 135 QAVDVIGWIMWSVGVSIEAIADQQKLSFKNSP--ENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVAST 201 (246)
Q Consensus 135 ~~~~~~g~~l~~~g~~le~~ad~q~~~f~~~~--~~~g~li~~Glw~~sRHPNYfge~l~w~g~~l~~~ 201 (246)
++.+++|++++++|...+..+|..+.+.|++| +++-++.+.|+|+++-+|||++|++.|+|+++++.
T Consensus 208 ~~~q~iGl~lFlig~~~n~~~H~iLa~LR~~k~~~~~Y~IP~GglF~~VSCPHYf~EIliw~gfal~t~ 276 (323)
T PLN03164 208 GWFQWIGAAIFLWGWIHQYRCHAILGSLREHKKQADEYVIPYGDWFEMVSCPHYLAEIVIYAGLLIASG 276 (323)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCCCceEECCCCCCcCeEcCCcHHHHHHHHHHHHHHHc
Confidence 45579999999999999999999999998543 22346889999999999999999999999999863
No 16
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=97.77 E-value=0.0002 Score=63.04 Aligned_cols=115 Identities=16% Similarity=0.151 Sum_probs=64.6
Q ss_pred HHHHHhhhCcccchhHH----HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-CCCc-HHHHHHHHHHHHHHHHH
Q 025925 79 LFLLMRILNWGEDRRFD----EMRSNLGKLAIFWIFQAVWVWTVSLPVTVVNASDRD-PSVQ-AVDVIGWIMWSVGVSIE 152 (246)
Q Consensus 79 ~~l~~R~~~~~eD~Ry~----~~r~~~~~~~~~~~~Q~~~~~~~~lP~~~~~~~~~~-~~l~-~~~~~g~~l~~~g~~le 152 (246)
.|..+|..+.---.||. .++.-.++.+.+|.+.+.. .|.+|+..-. +... ....+|++.++++-+.+
T Consensus 130 ~Hy~KRl~ET~FvhrFs~atmp~~nlfKnC~~yw~~~~~v-------aYfvnhp~~t~~~~~~~~~~~~l~~fv~~el~N 202 (297)
T KOG1639|consen 130 FHYGKRLLETIFVHRFSLATMPIFNLFKNCFYYWGFSALV-------AYFVNHPLFTPPKLGKLQVKLGLGGFVLCELGN 202 (297)
T ss_pred HHHHHHHHHHHHHHHhhhcccchHHHHHhhHHHHHHHHHH-------HHHhcCCCCCCcchhhhhhhhhhHHHhhhhhcc
Confidence 34455544333334554 2344455667778766653 3455543211 1121 23345555555554444
Q ss_pred HHHHHHHHHhccCCCCCCc-ccccc-ccccccCcchHHHHHHHHHHHHhh
Q 025925 153 AIADQQKLSFKNSPENRGK-WCNVG-FWKYSRHPNYFGEIFLWWGIFVAS 200 (246)
Q Consensus 153 ~~ad~q~~~f~~~~~~~g~-li~~G-lw~~sRHPNYfge~l~w~g~~l~~ 200 (246)
...+.-+++.|....++.+ -..+| +|.++-+|||+-|+..|+|+.++.
T Consensus 203 F~~HI~LR~lrp~g~k~r~ip~~~g~lFnlvscpNYt~Ev~sWi~F~i~t 252 (297)
T KOG1639|consen 203 FSCHILLRNLRPAGSKKRRIPLPDGFLFNLVSCPNYTYEVGSWIGFAIMT 252 (297)
T ss_pred eeeEeehhhccCCcCccceeecCCccEEEEEecCCcceehHHHHHHHHHH
Confidence 4444444444432122333 34667 899999999999999999998875
No 17
>KOG1640 consensus Predicted steroid reductase [Lipid transport and metabolism]
Probab=97.68 E-value=0.00028 Score=63.38 Aligned_cols=64 Identities=17% Similarity=0.341 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC--CCCccccccccccccCcchHHHHHHHHHHHHh
Q 025925 136 AVDVIGWIMWSVGVSIEAIADQQKLSFKNSPE--NRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVA 199 (246)
Q Consensus 136 ~~~~~g~~l~~~g~~le~~ad~q~~~f~~~~~--~~g~li~~Glw~~sRHPNYfge~l~w~g~~l~ 199 (246)
+.+++|.+++..|-.=+..+..++.+-|++|. .+..+++.|+++++..|||++|+++..|++..
T Consensus 192 i~q~~g~~iF~i~s~~Qy~~h~iL~nlrk~~~~~~~~~ip~g~~F~~Vs~Ph~L~Ei~iY~~ia~~ 257 (304)
T KOG1640|consen 192 ILQWLGLGIFAIGSIHQYASHEILGNLRKYPRQAKAYLIPKGGWFKLVSCPHYLAEIIIYVGIALG 257 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhheecCCCCEeeecCChHHHHHHHHHHHHHhc
Confidence 47899999999999999999999999888764 23357889999999999999999999997654
No 18
>PF07298 NnrU: NnrU protein; InterPro: IPR009915 This family consists of several plant and bacterial NnrU proteins. NnrU is thought to be involved in the reduction of nitric oxide. The exact function of NnrU is unclear. It is thought however that NnrU and perhaps NnrT are required for expression of both nirK and nor [].
Probab=91.66 E-value=1.3 Score=37.88 Aligned_cols=46 Identities=15% Similarity=0.323 Sum_probs=30.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccccccccCcchHHHHHHHH
Q 025925 135 QAVDVIGWIMWSVGVSIEAIADQQKLSFKNSPENRGKWCNVGFWKYSRHPNYFGEIFLWW 194 (246)
Q Consensus 135 ~~~~~~g~~l~~~g~~le~~ad~q~~~f~~~~~~~g~li~~Glw~~sRHPNYfge~l~w~ 194 (246)
.+...+...++..++++-..+.. +.+|.. +++++|||.+.|-.+ |.
T Consensus 67 ~~~~~l~~~lm~~a~il~~~a~~-----~~~~~~--------i~r~~RHP~l~g~~l-WA 112 (191)
T PF07298_consen 67 PWLRHLANLLMLLAFILLVAALF-----PPNPFS--------IYRITRHPMLLGVLL-WA 112 (191)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhc-----cCcchH--------HHHHhcCchHHHHHH-HH
Confidence 45666777777777777665522 222111 999999999999754 54
No 19
>PLN02797 phosphatidyl-N-dimethylethanolamine N-methyltransferase
Probab=74.06 E-value=8.8 Score=31.80 Aligned_cols=62 Identities=16% Similarity=0.164 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCC-CC---ccccccccccccCcchHHHHHHHHHHHHhh
Q 025925 139 VIGWIMWSVGVSIEAIADQQKLSFKNSPEN-RG---KWCNVGFWKYSRHPNYFGEIFLWWGIFVAS 200 (246)
Q Consensus 139 ~~g~~l~~~g~~le~~ad~q~~~f~~~~~~-~g---~li~~Glw~~sRHPNYfge~l~w~g~~l~~ 200 (246)
+.+..++.+|-++...+-+++..-.+--++ =| ..+|+=+|++.+||+|-|..+..+|.++.-
T Consensus 67 l~~~~L~aiGq~Lv~ss~~~LG~tGTYlGdyFGilm~~VT~FPFnv~~nPmY~GStl~fLg~al~~ 132 (164)
T PLN02797 67 LYFWPLFAFGQFLNFRVYQLLGEAGTYYGVRFGKNIPWVTEFPFGVIRDPQYVGSILSLLACLSWV 132 (164)
T ss_pred HHHHHHHHHhhHHHHHHHHHhCCceeeehhhhcccccccccCCCCCCCCcchhhHHHHHHHHHHHh
Confidence 578889999999999888887754442100 01 256666899999999999999999998763
No 20
>COG3162 Predicted membrane protein [Function unknown]
Probab=42.71 E-value=1.6e+02 Score=22.75 Aligned_cols=63 Identities=16% Similarity=0.104 Sum_probs=34.5
Q ss_pred chhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhC-----CCCC-CCcHHHHHHHHHHHHHHHHHHH
Q 025925 91 DRRFDEMRSNLGKLAIFWIFQAVWVWTVSLPVTVVNAS-----DRDP-SVQAVDVIGWIMWSVGVSIEAI 154 (246)
Q Consensus 91 D~Ry~~~r~~~~~~~~~~~~Q~~~~~~~~lP~~~~~~~-----~~~~-~l~~~~~~g~~l~~~g~~le~~ 154 (246)
.+||.+++++..+|... +.-..+++.++.|+.+.... |-.+ ..++-..+|+..++.++++..+
T Consensus 12 ~p~f~eLv~kr~~Fa~~-ltl~flv~Y~~filLiaf~~~~l~tp~~~~~Vt~Gip~gvg~fv~tfVlt~I 80 (102)
T COG3162 12 NPRFRELVRKRRRFAVP-LTLIFLVVYFGFILLIAFAPGWLATPLFGASVTRGIPFGVGVFVMTFVLTGI 80 (102)
T ss_pred CHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhHHHhcCcccCCceehhHhHHHHHHHHHHHHHHH
Confidence 47899998876654221 11222333444555443221 1111 2556667788888887777655
No 21
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=41.55 E-value=77 Score=28.97 Aligned_cols=25 Identities=8% Similarity=0.040 Sum_probs=19.5
Q ss_pred cccccccccccCcchHHHHHHHHHHHH
Q 025925 172 WCNVGFWKYSRHPNYFGEIFLWWGIFV 198 (246)
Q Consensus 172 li~~Glw~~sRHPNYfge~l~w~g~~l 198 (246)
+-+.|++++++|| +||+...+.+..
T Consensus 134 ~YT~gP~~l~y~g--LGE~~v~l~~G~ 158 (304)
T PRK07419 134 LYQGPPFRLGYQG--LGEPLCFLAFGP 158 (304)
T ss_pred eccCCCcccCCCC--chHHHHHHHHHH
Confidence 4566889999999 699988776643
No 22
>PF03818 MadM: Malonate/sodium symporter MadM subunit; InterPro: IPR018402 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=38.99 E-value=59 Score=22.65 Aligned_cols=52 Identities=15% Similarity=0.184 Sum_probs=36.7
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhccCeEeecccccHHHHHHHHHHHHhC
Q 025925 3 TVIDSHFLALTAIVTVGYQLLFFVITALFKFDKVTDFAGSTNFIIIALLTLILKG 57 (246)
Q Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~w~~~~~~~a~~~~~~~~ 57 (246)
.|+..+-|-.++++.-.++++.+.+|...-+-++= +|.--++.++..++.++
T Consensus 6 ~vl~~ngLitaFa~vG~~m~~S~~lS~~LT~Grih---GSAIAI~lGLvLAy~GG 57 (60)
T PF03818_consen 6 KVLTKNGLITAFAVVGIIMWVSYWLSKKLTRGRIH---GSAIAIVLGLVLAYIGG 57 (60)
T ss_pred HHHhhCchHHHHHHHHHHHHHHHHHHHHHhCCCcc---hHHHHHHHHHHHHHHcc
Confidence 35566777778888888999999999877776665 55555555655554443
No 23
>COG4094 Predicted membrane protein [Function unknown]
Probab=33.91 E-value=56 Score=28.36 Aligned_cols=24 Identities=17% Similarity=0.327 Sum_probs=16.6
Q ss_pred cccccccccccCcchHHHHHHHHH
Q 025925 172 WCNVGFWKYSRHPNYFGEIFLWWG 195 (246)
Q Consensus 172 li~~Glw~~sRHPNYfge~l~w~g 195 (246)
.-.+++=+.+|||.-.|..+.-.|
T Consensus 98 ~~~g~Ii~itRHP~l~g~~iWala 121 (219)
T COG4094 98 LYEGRIIRITRHPQLLGVVIWALA 121 (219)
T ss_pred ccCCceEEEecCchhHHHHHHHHH
Confidence 344566689999999988544333
No 24
>KOG4142 consensus Phospholipid methyltransferase [Lipid transport and metabolism]
Probab=29.93 E-value=78 Score=26.71 Aligned_cols=64 Identities=11% Similarity=0.120 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-----CCccccccccccccCcchHHHHHHHHHHHHhh
Q 025925 137 VDVIGWIMWSVGVSIEAIADQQKLSFKNSPEN-----RGKWCNVGFWKYSRHPNYFGEIFLWWGIFVAS 200 (246)
Q Consensus 137 ~~~~g~~l~~~g~~le~~ad~q~~~f~~~~~~-----~g~li~~Glw~~sRHPNYfge~l~w~g~~l~~ 200 (246)
..-+|.+++..|.++-..+...+.--.+.-++ +..-++.=+|..+-||+|-|.-+...|+++.-
T Consensus 97 ~~~lg~alfglG~VLVLSSmykLG~~GTyLGDYFGiL~~eRVtgFPFNv~dNPMY~GSTl~fLg~Al~~ 165 (208)
T KOG4142|consen 97 AYSLGLALFGLGVVLVLSSMYKLGFAGTYLGDYFGILKEERVTGFPFNVLDNPMYWGSTLNFLGWALMH 165 (208)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhccchhhhhhhhhhhhhhhcccccccccCCcccccchHHHHHHHHHc
Confidence 45677888888888776665554422221000 11234444799999999999999999999974
No 25
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=28.69 E-value=1.4e+02 Score=27.00 Aligned_cols=25 Identities=12% Similarity=0.134 Sum_probs=18.0
Q ss_pred cccccccccccCcchHHHHHHHHHHHH
Q 025925 172 WCNVGFWKYSRHPNYFGEIFLWWGIFV 198 (246)
Q Consensus 172 li~~Glw~~sRHPNYfge~l~w~g~~l 198 (246)
+-+.|+++++||| +||+...+.+..
T Consensus 121 ~Yt~gP~~l~y~g--LGE~~v~l~~G~ 145 (285)
T TIGR02235 121 LYQGPPFRLGYQG--LGEPICWLCFGP 145 (285)
T ss_pred hhcCCCcccCCCC--ccHHHHHHHHHH
Confidence 3445788899998 599887666543
No 26
>PF06011 TRP: Transient receptor potential (TRP) ion channel; InterPro: IPR010308 This family consists of hypothetical proteins of unknown function found in fungi.
Probab=27.09 E-value=5.5e+02 Score=24.37 Aligned_cols=41 Identities=22% Similarity=0.149 Sum_probs=21.5
Q ss_pred HHHHhHHHHHhhhCcccchhHHHHHHhhhHHHHHHHHHHHH
Q 025925 74 GLRLALFLLMRILNWGEDRRFDEMRSNLGKLAIFWIFQAVW 114 (246)
Q Consensus 74 ~~RL~~~l~~R~~~~~eD~Ry~~~r~~~~~~~~~~~~Q~~~ 114 (246)
.+++...+..|..+..++.|+++.|+++..+..-.++..++
T Consensus 175 ~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~g~~lr~~l 215 (438)
T PF06011_consen 175 LLKLILELLARRGSMPKPDRLAEFRRHWWSFLKGNLLRLLL 215 (438)
T ss_pred HHHHHHHHHHHhcccCCcchHHHHHHhHHHHHHHHHHHHHH
Confidence 34444444434333335668899998876543333333333
No 27
>PF15113 TMEM117: TMEM117 protein family
Probab=26.93 E-value=1.2e+02 Score=28.72 Aligned_cols=59 Identities=25% Similarity=0.485 Sum_probs=38.8
Q ss_pred hCCchhHHHHHHHHHHHHHHHHhHHHHHhhhCcccchhHHHHHHhhhHHHHHHHHHHHHH
Q 025925 56 KGSWHFRQVVLTFLAVVWGLRLALFLLMRILNWGEDRRFDEMRSNLGKLAIFWIFQAVWV 115 (246)
Q Consensus 56 ~~~~~~r~~l~~~l~~~W~~RL~~~l~~R~~~~~eD~Ry~~~r~~~~~~~~~~~~Q~~~~ 115 (246)
++++..-+.++-.+.+++|+|.+.|++.|.. -|.|-|-+-+|++-|.+...|+..-+.+
T Consensus 60 ~~gw~~LKv~lwllai~~GL~~GKfl~H~~L-fg~~~rlkmf~ed~Gswm~mF~stil~l 118 (415)
T PF15113_consen 60 GGGWRALKVLLWLLAIFTGLIAGKFLFHQRL-FGQLLRLKMFREDHGSWMTMFLSTILFL 118 (415)
T ss_pred CCchHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHHHHhhhhhcccCCceehHHHHHHHHH
Confidence 3455666677777999999999999997743 2445566667776665544444333333
No 28
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=26.26 E-value=1.7e+02 Score=26.68 Aligned_cols=58 Identities=21% Similarity=0.261 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHhccCCCCCCccccccccccccCcchHHHHHHHHHHHHhhcC
Q 025925 138 DVIGWIMWSVGVSIEAIAD-QQKLSFKNSPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTP 202 (246)
Q Consensus 138 ~~~g~~l~~~g~~le~~ad-~q~~~f~~~~~~~g~li~~Glw~~sRHPNYfge~l~w~g~~l~~~~ 202 (246)
.++|+.+.++|-+....++ .||+..++.++++.+ -.++ ...|+-+-..|.|+.+...+
T Consensus 5 ~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~-~~~~------~~~~l~~~~W~~G~~~~~~g 63 (300)
T PF05653_consen 5 FYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLR-AGSG------GRSYLRRPLWWIGLLLMVLG 63 (300)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc-ccch------hhHHHhhHHHHHHHHHHhcc
Confidence 3678888888877776665 588877665431111 0112 23577777888888776654
No 29
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=25.63 E-value=1.9e+02 Score=26.10 Aligned_cols=23 Identities=22% Similarity=0.109 Sum_probs=17.1
Q ss_pred cccccccccCcchHHHHHHHHHHHH
Q 025925 174 NVGFWKYSRHPNYFGEIFLWWGIFV 198 (246)
Q Consensus 174 ~~Glw~~sRHPNYfge~l~w~g~~l 198 (246)
+.|++++++|| +||+...+.+..
T Consensus 126 t~gP~~l~y~g--LGE~~v~i~~G~ 148 (284)
T TIGR00751 126 TVGSKPYGYAG--LGDISVLVFFGP 148 (284)
T ss_pred cCCCCccccCc--hHHHHHHHHHHH
Confidence 34677888888 799888777643
No 30
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=24.48 E-value=2e+02 Score=26.32 Aligned_cols=21 Identities=38% Similarity=0.431 Sum_probs=16.2
Q ss_pred cccccccccccCcchHHHHHHHH
Q 025925 172 WCNVGFWKYSRHPNYFGEIFLWW 194 (246)
Q Consensus 172 li~~Glw~~sRHPNYfge~l~w~ 194 (246)
+-+.|+++++|+| +||+..-+
T Consensus 129 ~Yt~gP~~l~y~g--LGe~~v~i 149 (317)
T PRK13387 129 LYTGGPLPLSRMP--LGEIFSGL 149 (317)
T ss_pred hhcCCCcccccCc--cHHHHHHH
Confidence 4455889999999 99987433
No 31
>PLN02922 prenyltransferase
Probab=22.72 E-value=1.6e+02 Score=27.08 Aligned_cols=24 Identities=13% Similarity=0.073 Sum_probs=17.3
Q ss_pred ccccccccccCcchHHHHHHHHHHHH
Q 025925 173 CNVGFWKYSRHPNYFGEIFLWWGIFV 198 (246)
Q Consensus 173 i~~Glw~~sRHPNYfge~l~w~g~~l 198 (246)
-+.|+++++|+| +||+...+++..
T Consensus 139 Yt~gP~pl~y~g--LGE~~v~i~fG~ 162 (315)
T PLN02922 139 YQCPPFRLSYKG--LGEPLCFAAFGP 162 (315)
T ss_pred HhcCCcccccCc--chHHHHHHHHHH
Confidence 345778888888 589887776643
No 32
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=22.25 E-value=2.8e+02 Score=21.91 Aligned_cols=61 Identities=7% Similarity=0.082 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCeEeecccccHHHHHHHHHH---HHhCCchhHHHHHHHHHH
Q 025925 11 ALTAIVTVGYQLLFFVITALFKFDKVTDFAGSTNFIIIALLTL---ILKGSWHFRQVVLTFLAV 71 (246)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~w~~~~~~~a~~~~---~~~~~~~~r~~l~~~l~~ 71 (246)
....+++.+.....|..+...-.-+..=..|+..++..+.... ..++..+.++++=.++++
T Consensus 51 i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi 114 (129)
T PRK02971 51 VLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIM 114 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3345556666777777776665666666778888765554433 467888887776554444
No 33
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=21.51 E-value=1.1e+02 Score=28.07 Aligned_cols=41 Identities=17% Similarity=0.222 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCeEeecccccHHHHHH
Q 025925 9 FLALTAIVTVGYQLLFFVITALFKFDKVTDFAGSTNFIIIA 49 (246)
Q Consensus 9 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~w~~~~~~~a 49 (246)
++..++.+-+++-.-++.=..+.+.+++-..-|-++++=-.
T Consensus 44 Flic~~g~Ff~Yl~yGy~qElif~~~gfkp~GWylTlvQf~ 84 (367)
T KOG1582|consen 44 FLICSAGVFFLYLVYGYLQELIFNVEGFKPFGWYLTLVQFL 84 (367)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHH
Confidence 44445555555555666666777888888888888876543
No 34
>PF09124 Endonuc-dimeris: T4 recombination endonuclease VII, dimerisation; InterPro: IPR015208 This entry represents a dimerisation domain predominantly found in Bacteriophage T4 recombination endonuclease VII. It adopts a helical secondary structure, with three alpha helices oriented parallel to each other. As well as mediating dimerisation of the protein, this domain is also involved in binding to the DNA major groove []. ; PDB: 1EN7_B 1E7L_B 2QNF_A 2QNC_A 1E7D_A.
Probab=21.29 E-value=65 Score=21.99 Aligned_cols=12 Identities=25% Similarity=0.952 Sum_probs=9.8
Q ss_pred CcchHHHHHHHH
Q 025925 183 HPNYFGEIFLWW 194 (246)
Q Consensus 183 HPNYfge~l~w~ 194 (246)
||||..+..-|+
T Consensus 2 HP~fv~D~~K~F 13 (54)
T PF09124_consen 2 HPQFVPDKVKWF 13 (54)
T ss_dssp -THHHHHHHHHH
T ss_pred CccchhHHHHHH
Confidence 999999988876
No 35
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=21.29 E-value=6.5e+02 Score=23.18 Aligned_cols=27 Identities=19% Similarity=0.020 Sum_probs=20.4
Q ss_pred ccccccccccccCcchHHHHHHHHHHHHh
Q 025925 171 KWCNVGFWKYSRHPNYFGEIFLWWGIFVA 199 (246)
Q Consensus 171 ~li~~Glw~~sRHPNYfge~l~w~g~~l~ 199 (246)
-+-|.|++.|+++| +||+..-+-+...
T Consensus 135 ~~YTgGp~PlgY~g--LGEi~~~vffG~l 161 (303)
T COG1575 135 ILYTGGPFPLGYMG--LGEIFVGVFFGPL 161 (303)
T ss_pred eeeccCCcCcccCC--HHHHHHHHHHHHH
Confidence 46678899999999 7998875555443
No 36
>COG2510 Predicted membrane protein [Function unknown]
Probab=20.97 E-value=4.6e+02 Score=21.33 Aligned_cols=56 Identities=14% Similarity=0.132 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHhccCeEeecccccHHHHHHHHHHH-HhCCchhHHHHHHHHHH
Q 025925 16 VTVGYQLLFFVITALFKFDKVTDFAGSTNFIIIALLTLI-LKGSWHFRQVVLTFLAV 71 (246)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~D~~w~~~~~~~a~~~~~-~~~~~~~r~~l~~~l~~ 71 (246)
++-+..++.|..+...++.+.|-..=.+..++.++++.. .++..+.++++=.++++
T Consensus 75 la~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~ 131 (140)
T COG2510 75 LAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIV 131 (140)
T ss_pred HHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 556777888888888899999888888888888777654 45666666665555444
No 37
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=20.36 E-value=5e+02 Score=23.34 Aligned_cols=53 Identities=9% Similarity=0.191 Sum_probs=27.9
Q ss_pred HHHHHHHHhccCeEeecccccHHHHHHHHHHH-HhCCchhHHHHHHHHHHHHHH
Q 025925 23 LFFVITALFKFDKVTDFAGSTNFIIIALLTLI-LKGSWHFRQVVLTFLAVVWGL 75 (246)
Q Consensus 23 ~~~~~~~~~~~~~~~D~~w~~~~~~~a~~~~~-~~~~~~~r~~l~~~l~~~W~~ 75 (246)
...+.+...|...+=+...++.+....+..+. .++..+...+++.+.+.+|..
T Consensus 128 ~~~~Y~~~KR~t~~~~~~~g~~~~~~~l~G~~av~g~~~~~~~~l~~~~~~w~~ 181 (291)
T PRK12874 128 VLGGYSYFKRFSSLAHLVLGLSLGLAPIAGVVAVLGEIPLWSVFLALGVMFWVA 181 (291)
T ss_pred HHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 34445554444444455666665444433222 244444455666677778876
Done!