Query 025925
Match_columns 246
No_of_seqs 227 out of 1256
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 20:45:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025925.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025925hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a2n_B Isoprenylcysteine carbo 99.8 5.3E-20 1.8E-24 156.1 14.8 104 134-245 74-183 (194)
2 3r5l_A Deazaflavin-dependent n 18.4 45 0.0015 25.2 1.4 12 235-246 98-109 (122)
3 2i68_A Protein EMRE; transmemb 8.7 5.1E+02 0.017 19.5 4.9 53 18-70 40-94 (137)
4 2dn5_A General transcription f 8.3 56 0.0019 23.5 -0.8 21 169-189 41-63 (89)
5 2klq_A CBD, P105MCM, DNA repli 7.9 86 0.0029 23.3 0.1 9 179-187 103-111 (114)
6 2ket_A Cathelicidin-6; antimic 7.8 2.2E+02 0.0074 15.4 1.6 12 93-104 2-13 (27)
7 2jp3_A FXYD domain-containing 7.8 3.3E+02 0.011 18.4 3.0 12 142-153 26-37 (67)
8 2jqt_A H-NS/STPA-binding prote 6.8 3.6E+02 0.012 18.4 2.8 32 150-182 38-71 (71)
9 3ctd_A Putative ATPase, AAA fa 6.3 2.3E+02 0.008 23.5 2.0 20 79-98 55-74 (213)
10 2xi5_A RNA polymerase L, L-pro 6.2 1.3E+02 0.0043 24.5 0.2 11 180-191 32-42 (184)
No 1
>4a2n_B Isoprenylcysteine carboxyl methyltransferase; membrane protein, RAS and RHO gtpases signallin; HET: SAH PLM CDL; 3.40A {Methanosarcina acetivorans}
Probab=99.83 E-value=5.3e-20 Score=156.12 Aligned_cols=104 Identities=15% Similarity=0.230 Sum_probs=80.6
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHh-cc--CCCCCCccccccccccccCcchHHHHHHHHHHHHhhcCCCCchhHH
Q 025925 134 VQAVDVIGWIMWSVGVSIEAIADQQKLSF-KN--SPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWL 210 (246)
Q Consensus 134 l~~~~~~g~~l~~~g~~le~~ad~q~~~f-~~--~~~~~g~li~~Glw~~sRHPNYfge~l~w~g~~l~~~~~~~~~~~~ 210 (246)
..+..++|.+++++|+.++..||.|+.++ +. +++++++++++|+|++||||||+|+++.|+|+++...+ ++
T Consensus 74 p~~~~~~G~~l~l~G~~l~~~a~~~Lg~~f~~~~~~~~~~~Lvt~G~y~~vRHP~Y~G~~l~~~g~~l~~~s------~~ 147 (194)
T 4a2n_B 74 PDSIRLFALIVTFLNIGLFTKIHKDLGNNWSAILEIKDGHKLVKEGIYKNIRHPMYAHLWLWVITQGIILSN------WV 147 (194)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCSSCCEETTCCCCCSSTTTTBSSHHHHHHHHHHHHHHHHHTC------HH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCeeeecCcchhccCccHHHHHHHHHHHHHHhcc------HH
Confidence 45788999999999999999999998765 32 23567889999999999999999999999999987532 33
Q ss_pred HHH-HHHHHHHHHHHhhCchHHHHHh-ccC-cCccccc
Q 025925 211 VIL-GPIFLTLLLLFISGIPLLEVCL-SYY-THARAYI 245 (246)
Q Consensus 211 ~~i-~p~~~~~ll~~~sgi~~~E~~~-~ky-~~Y~~Y~ 245 (246)
.++ ++++++.++ ..+++.||+.+ +|| ++|++|+
T Consensus 148 ~~~~~~~~~~~~~--~~ri~~EE~~L~~~fG~~Y~~Y~ 183 (194)
T 4a2n_B 148 VLIFGIVAWAILY--FIRVPKEEELLIEEFGDEYIEYM 183 (194)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHhCHHHHHHH
Confidence 333 344333332 34589999976 456 6899997
No 2
>3r5l_A Deazaflavin-dependent nitroreductase; PA-824, split barrel-like fold, DUF385, deazaflavin-dependen nitroreductase, nitroimidazoles; HET: MES; 1.55A {Mycobacterium tuberculosis} PDB: 3r5p_A 3r5w_A* 3r5r_A*
Probab=18.36 E-value=45 Score=25.21 Aligned_cols=12 Identities=17% Similarity=0.379 Sum_probs=9.7
Q ss_pred hccCcCcccccC
Q 025925 235 LSYYTHARAYIL 246 (246)
Q Consensus 235 ~~ky~~Y~~Y~~ 246 (246)
.++||+|.+||.
T Consensus 98 ~~~~p~y~~yq~ 109 (122)
T 3r5l_A 98 VTMYPSYQDYQS 109 (122)
T ss_dssp HHHCTTCCCTTG
T ss_pred HHHCcCHHHHHh
Confidence 357999999983
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=8.75 E-value=5.1e+02 Score=19.48 Aligned_cols=53 Identities=9% Similarity=0.123 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHhccCeEeeccc-ccHHHHHHHHHH-HHhCCchhHHHHHHHHH
Q 025925 18 VGYQLLFFVITALFKFDKVTDFAG-STNFIIIALLTL-ILKGSWHFRQVVLTFLA 70 (246)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~D~~w-~~~~~~~a~~~~-~~~~~~~~r~~l~~~l~ 70 (246)
.+.....|..+...-..+..=..| +++++..+++.. .+++..++++++=.+++
T Consensus 40 ~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LI 94 (137)
T 2i68_A 40 YCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLI 94 (137)
T ss_dssp HHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHH
T ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 333334444333322334444444 667777666653 35666666665444433
No 4
>2dn5_A General transcription factor II-I repeat domain- containing protein 1; structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=8.27 E-value=56 Score=23.54 Aligned_cols=21 Identities=19% Similarity=0.115 Sum_probs=14.0
Q ss_pred CCccccccccc--cccCcchHHH
Q 025925 169 RGKWCNVGFWK--YSRHPNYFGE 189 (246)
Q Consensus 169 ~g~li~~Glw~--~sRHPNYfge 189 (246)
++.+..+|+=. --|||||+|-
T Consensus 41 p~~v~V~GlP~gi~FR~P~~y~I 63 (89)
T 2dn5_A 41 PDAVEVTGLPDDIPFRNPNTYDI 63 (89)
T ss_dssp TTSEEEESCCTTCCCCCSSSCCH
T ss_pred CCeEEEEeCCCCccccCCccccH
Confidence 45566666533 4589999884
No 5
>2klq_A CBD, P105MCM, DNA replication licensing factor MCM6; PRE-RC, CDT1, CBD structure, ATP-BIND cycle, DNA-binding, nucleotide-binding, nucleus; HET: DNA; NMR {Homo sapiens}
Probab=7.92 E-value=86 Score=23.30 Aligned_cols=9 Identities=33% Similarity=0.641 Sum_probs=7.0
Q ss_pred ccccCcchH
Q 025925 179 KYSRHPNYF 187 (246)
Q Consensus 179 ~~sRHPNYf 187 (246)
-|+=||||.
T Consensus 103 ~lvVHPNy~ 111 (114)
T 2klq_A 103 YLVVNPNYL 111 (114)
T ss_dssp BCEECSCCC
T ss_pred EEEECCCCC
Confidence 477799994
No 6
>2ket_A Cathelicidin-6; antimicrobial peptide, antibiotic, antimicrobial, fungicide, pyrrolidone carboxylic acid, secreted; NMR {Bos taurus}
Probab=7.83 E-value=2.2e+02 Score=15.37 Aligned_cols=12 Identities=42% Similarity=0.775 Sum_probs=7.9
Q ss_pred hHHHHHHhhhHH
Q 025925 93 RFDEMRSNLGKL 104 (246)
Q Consensus 93 Ry~~~r~~~~~~ 104 (246)
||..+|+++.++
T Consensus 2 rfkrfrkkfkkl 13 (27)
T 2ket_A 2 RFKRFRKKFKKL 13 (27)
T ss_dssp CHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH
Confidence 677777776554
No 7
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=7.83 E-value=3.3e+02 Score=18.41 Aligned_cols=12 Identities=8% Similarity=0.315 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHH
Q 025925 142 WIMWSVGVSIEA 153 (246)
Q Consensus 142 ~~l~~~g~~le~ 153 (246)
.++++.|+++-.
T Consensus 26 ~vLfi~GI~iil 37 (67)
T 2jp3_A 26 GLLCIAGIALAL 37 (67)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 345566665544
No 8
>2jqt_A H-NS/STPA-binding protein 2; CNU, YDGT, replication origin associated, ORIC, protein binding; NMR {Escherichia coli}
Probab=6.82 E-value=3.6e+02 Score=18.40 Aligned_cols=32 Identities=16% Similarity=0.296 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHhcc-CCCC-CCcccccccccccc
Q 025925 150 SIEAIADQQKLSFKN-SPEN-RGKWCNVGFWKYSR 182 (246)
Q Consensus 150 ~le~~ad~q~~~f~~-~~~~-~g~li~~Glw~~sR 182 (246)
.+...||.-+..... ++-- -| -+..++|+|+|
T Consensus 38 ~f~~AaDHRrAEl~~~gkLyD~~-kVP~~VW~yV~ 71 (71)
T 2jqt_A 38 NMYRAADHRRAELVSGGRLFDLG-QVPKSVWHYVQ 71 (71)
T ss_dssp HHHHHHHHHHHHHHTTCCCC---------------
T ss_pred HHHHHHHHHHHHHhcCCcccccc-cCCHHHhhhcC
Confidence 367788988888775 3211 22 34568899876
No 9
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=6.31 E-value=2.3e+02 Score=23.52 Aligned_cols=20 Identities=35% Similarity=0.504 Sum_probs=13.8
Q ss_pred HHHHHhhhCcccchhHHHHH
Q 025925 79 LFLLMRILNWGEDRRFDEMR 98 (246)
Q Consensus 79 ~~l~~R~~~~~eD~Ry~~~r 98 (246)
.|++.|.+..|||+||-.=|
T Consensus 55 LywLaRMl~~GEDp~~IaRR 74 (213)
T 3ctd_A 55 LYWLANMVEAGEDPNFIFRR 74 (213)
T ss_dssp HHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHH
Confidence 34556667889999886443
No 10
>2xi5_A RNA polymerase L, L-protein; transferase, bunyaviridae, orthobunyavirus, aedes triseriatu hydrolase; 2.20A {Bunyavirus la crosse} PDB: 2xi7_A*
Probab=6.19 E-value=1.3e+02 Score=24.46 Aligned_cols=11 Identities=45% Similarity=1.056 Sum_probs=8.3
Q ss_pred cccCcchHHHHH
Q 025925 180 YSRHPNYFGEIF 191 (246)
Q Consensus 180 ~sRHPNYfge~l 191 (246)
..|| ||||..+
T Consensus 32 ~~RH-DyFGre~ 42 (184)
T 2xi5_A 32 MARH-DYFGREL 42 (184)
T ss_dssp HHHH-HHHHHHH
T ss_pred HHHh-HHHHHHH
Confidence 5788 9999644
Done!