Query 025925
Match_columns 246
No_of_seqs 227 out of 1256
Neff 6.8
Searched_HMMs 13730
Date Mon Mar 25 20:45:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025925.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025925hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rgoa2 g.66.1.1 (A:187-220) B 34.4 4.8 0.00035 22.4 0.4 12 181-192 1-12 (34)
2 d1e7la1 a.140.4.1 (A:104-157) 33.5 9.2 0.00067 23.4 1.6 12 183-194 2-13 (54)
3 d2e74f1 f.23.25.1 (F:1-32) Pet 9.0 1.5E+02 0.011 15.4 3.6 21 10-30 5-25 (32)
4 d3ctda1 a.80.1.2 (A:258-420) U 8.1 81 0.0059 23.2 2.0 20 79-98 22-41 (163)
5 d1jw2a_ a.23.5.1 (A:) Hemolysi 7.4 1.1E+02 0.0082 19.4 2.1 30 151-182 43-72 (72)
6 d1ytqa2 b.11.1.1 (A:104-194) b 6.0 35 0.0025 22.6 -1.1 19 172-190 41-59 (91)
7 d1okia2 b.11.1.1 (A:145-236) b 5.2 38 0.0028 22.4 -1.3 19 171-189 41-59 (92)
8 d3bgea1 a.80.1.2 (A:251-434) U 5.0 1.5E+02 0.011 22.1 2.0 20 79-98 24-43 (184)
9 d1szwa_ d.265.1.4 (A:) tRNA ps 4.9 42 0.0031 27.4 -1.6 10 183-192 156-165 (341)
10 d1ytqa1 b.11.1.1 (A:14-103) be 4.8 43 0.0031 22.0 -1.3 20 171-190 38-57 (90)
No 1
>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.38 E-value=4.8 Score=22.45 Aligned_cols=12 Identities=42% Similarity=0.761 Sum_probs=8.1
Q ss_pred ccCcchHHHHHH
Q 025925 181 SRHPNYFGEIFL 192 (246)
Q Consensus 181 sRHPNYfge~l~ 192 (246)
+|||.|=-++.-
T Consensus 1 ~rhpkyKT~lC~ 12 (34)
T d1rgoa2 1 TRHPKYKTELCR 12 (34)
T ss_dssp CCCTTTTCSBCH
T ss_pred CCCCCccchhcc
Confidence 689988655443
No 2
>d1e7la1 a.140.4.1 (A:104-157) Recombination endonuclease VII, C-terminal and dimerization domains {Bacteriophage T4 [TaxId: 10665]}
Probab=33.50 E-value=9.2 Score=23.43 Aligned_cols=12 Identities=33% Similarity=0.673 Sum_probs=10.6
Q ss_pred CcchHHHHHHHH
Q 025925 183 HPNYFGEIFLWW 194 (246)
Q Consensus 183 HPNYfge~l~w~ 194 (246)
||||.++..=|+
T Consensus 2 Hp~~~~D~~K~F 13 (54)
T d1e7la1 2 HPNFVGDKSKEF 13 (54)
T ss_dssp CTHHHHHHHHHH
T ss_pred CcchhhHHHHHH
Confidence 999999988776
No 3
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=8.98 E-value=1.5e+02 Score=15.43 Aligned_cols=21 Identities=14% Similarity=0.322 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025925 10 LALTAIVTVGYQLLFFVITAL 30 (246)
Q Consensus 10 l~~~~~~~~~~~~~~~~~~~~ 30 (246)
.+-+++++|+..+++|.++..
T Consensus 5 il~aa~lsfglifvgwglgal 25 (32)
T d2e74f1 5 MLYAALLSFGLIFVGWGLGVL 25 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHhHHHHH
Confidence 345778888888888887754
No 4
>d3ctda1 a.80.1.2 (A:258-420) Uncharacterized protein YrvN {Prochlorococcus marinus [TaxId: 1219]}
Probab=8.10 E-value=81 Score=23.21 Aligned_cols=20 Identities=35% Similarity=0.504 Sum_probs=13.8
Q ss_pred HHHHHhhhCcccchhHHHHH
Q 025925 79 LFLLMRILNWGEDRRFDEMR 98 (246)
Q Consensus 79 ~~l~~R~~~~~eD~Ry~~~r 98 (246)
.|++.|.+..|||.+|-.=|
T Consensus 22 ly~larml~~Gedp~~i~RR 41 (163)
T d3ctda1 22 LYWLANMVEAGEDPNFIFRR 41 (163)
T ss_dssp HHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHcCCchHHHHHH
Confidence 34556777789999886433
No 5
>d1jw2a_ a.23.5.1 (A:) Hemolysin expression modulating protein HHA {Escherichia coli [TaxId: 562]}
Probab=7.37 E-value=1.1e+02 Score=19.36 Aligned_cols=30 Identities=17% Similarity=0.229 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhccCCCCCCcccccccccccc
Q 025925 151 IEAIADQQKLSFKNSPENRGKWCNVGFWKYSR 182 (246)
Q Consensus 151 le~~ad~q~~~f~~~~~~~g~li~~Glw~~sR 182 (246)
++..||+-+.....++- -. -+..++|+|+|
T Consensus 43 f~~AaDHR~AELtm~KL-yD-kVP~sVWk~Vr 72 (72)
T d1jw2a_ 43 FYSAADHRLAELTMNKL-YD-KIPSSVWKFIR 72 (72)
T ss_dssp HHHHHHHHHHHHHSSSC-CS-CCCHHHHHHCC
T ss_pred HHHHHHHHHHHHHhhhh-hh-hCCHHHHHhcC
Confidence 67889998888865431 12 36678899886
No 6
>d1ytqa2 b.11.1.1 (A:104-194) beta-Crystallin {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.00 E-value=35 Score=22.57 Aligned_cols=19 Identities=26% Similarity=0.403 Sum_probs=16.4
Q ss_pred cccccccccccCcchHHHH
Q 025925 172 WCNVGFWKYSRHPNYFGEI 190 (246)
Q Consensus 172 li~~Glw~~sRHPNYfge~ 190 (246)
-+.+|.|-.--||||-|..
T Consensus 41 ~V~~G~Wv~Ye~~nf~G~~ 59 (91)
T d1ytqa2 41 RVQSGTWVGYQYPGYRGLQ 59 (91)
T ss_dssp EECSSCEEEEEETTTEEEE
T ss_pred EecCCCEEEEecCCcEEEE
Confidence 4778999999999999864
No 7
>d1okia2 b.11.1.1 (A:145-236) beta-Crystallin {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.19 E-value=38 Score=22.38 Aligned_cols=19 Identities=26% Similarity=0.378 Sum_probs=16.4
Q ss_pred ccccccccccccCcchHHH
Q 025925 171 KWCNVGFWKYSRHPNYFGE 189 (246)
Q Consensus 171 ~li~~Glw~~sRHPNYfge 189 (246)
--+.+|.|-.--||||-|.
T Consensus 41 i~V~~G~Wv~ye~~nf~G~ 59 (92)
T d1okia2 41 VKVSSGTWVGYQYPGYRGY 59 (92)
T ss_dssp EEEEESEEEEEEETTTEEE
T ss_pred EEEeCCCEEEEECCCCEEE
Confidence 3578899999999999885
No 8
>d3bgea1 a.80.1.2 (A:251-434) Uncharacterized protein NTHI1458 {Haemophilus influenzae [TaxId: 727]}
Probab=5.00 E-value=1.5e+02 Score=22.08 Aligned_cols=20 Identities=35% Similarity=0.499 Sum_probs=13.4
Q ss_pred HHHHHhhhCcccchhHHHHH
Q 025925 79 LFLLMRILNWGEDRRFDEMR 98 (246)
Q Consensus 79 ~~l~~R~~~~~eD~Ry~~~r 98 (246)
.|++.|.+..|||.+|-.=|
T Consensus 24 ly~larml~~GeDp~~i~RR 43 (184)
T d3bgea1 24 LYWYARILTAGGDPLYVARR 43 (184)
T ss_dssp HHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHH
Confidence 34556777789998876433
No 9
>d1szwa_ d.265.1.4 (A:) tRNA pseudouridine synthase TruD {Escherichia coli [TaxId: 562]}
Probab=4.87 E-value=42 Score=27.39 Aligned_cols=10 Identities=50% Similarity=0.923 Sum_probs=7.8
Q ss_pred CcchHHHHHH
Q 025925 183 HPNYFGEIFL 192 (246)
Q Consensus 183 HPNYfge~l~ 192 (246)
=|||||++=+
T Consensus 156 fpNYfG~QRF 165 (341)
T d1szwa_ 156 VPNYFGAQRF 165 (341)
T ss_dssp EECCCCGGGG
T ss_pred Cccccccccc
Confidence 4999998654
No 10
>d1ytqa1 b.11.1.1 (A:14-103) beta-Crystallin {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.79 E-value=43 Score=22.01 Aligned_cols=20 Identities=25% Similarity=0.302 Sum_probs=16.8
Q ss_pred ccccccccccccCcchHHHH
Q 025925 171 KWCNVGFWKYSRHPNYFGEI 190 (246)
Q Consensus 171 ~li~~Glw~~sRHPNYfge~ 190 (246)
--+.+|.|-.--||||-|+.
T Consensus 38 i~V~~G~Wv~ye~~nf~G~~ 57 (90)
T d1ytqa1 38 VLVQAGPWVGYEQANCKGEQ 57 (90)
T ss_dssp EEEEECCEEEEEETTTEEEE
T ss_pred EEEcCCcEEEEccCCCEEEE
Confidence 35689999999999999864
Done!