Your job contains 1 sequence.
>025926
MWLMKCPALVSRSLKIPSSDNDDDDSARPVAKVILSIDPLQSNEDSSSSSSSSSTRFTME
LISTESGNAPKRYSMDMSKDLIPMSVFAESSNGKISVEGKIKNKFDMRPHHENMENYGKL
CRERTNKYMTKSRQIQVIDNDNGSHMRPMPGMMISTGFTEKKKPQPKGSEVKRTRRDRGE
MEDIMFKLFERQSNWTLRQLIQETDQPEQFLKDMLKDLCVYNNKGSNQGSYELKPEYKKA
ADGPAS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 025926
(246 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2005674 - symbol:AT1G75510 species:3702 "Arabi... 685 1.9e-67 1
DICTYBASE|DDB_G0287131 - symbol:gtf2f2 "TFIIF subunit" sp... 208 3.1e-19 2
UNIPROTKB|E1BXD0 - symbol:GTF2F2 "Uncharacterized protein... 201 1.7e-18 2
UNIPROTKB|Q2T9L9 - symbol:GTF2F2 "General transcription f... 220 3.6e-18 1
FB|FBgn0010421 - symbol:TfIIFbeta "Transcription factor T... 219 4.6e-18 1
MGI|MGI:1915955 - symbol:Gtf2f2 "general transcription fa... 216 9.5e-18 1
UNIPROTKB|Q63489 - symbol:Gtf2f2 "RAP30" species:10116 "R... 216 9.5e-18 1
UNIPROTKB|P13984 - symbol:GTF2F2 "General transcription f... 214 1.6e-17 1
POMBASE|SPBC1198.13c - symbol:tfg2 "transcription factor ... 213 2.0e-17 1
RGD|620772 - symbol:Gtf2f2 "general transcription factor ... 213 2.0e-17 1
UNIPROTKB|E2RGQ0 - symbol:GTF2F2 "Uncharacterized protein... 204 1.8e-16 1
ZFIN|ZDB-GENE-050417-374 - symbol:gtf2f2b "general transc... 201 3.7e-16 1
ZFIN|ZDB-GENE-040625-131 - symbol:gtf2f2a "general transc... 184 2.3e-14 1
UNIPROTKB|G3X7X9 - symbol:LOC100850122 "Uncharacterized p... 162 5.9e-12 2
UNIPROTKB|I3LJ09 - symbol:GTF2F2 "Uncharacterized protein... 157 1.7e-11 1
SGD|S000003237 - symbol:TFG2 "TFIIF (Transcription Factor... 163 3.4e-10 1
WB|WBGene00012694 - symbol:Y39B6A.36 species:6239 "Caenor... 152 2.9e-09 1
CGD|CAL0005275 - symbol:orf19.2111 species:5476 "Candida ... 141 2.2e-07 1
ASPGD|ASPL0000051527 - symbol:AN1538 species:162425 "Emer... 131 3.1e-06 1
>TAIR|locus:2005674 [details] [associations]
symbol:AT1G75510 species:3702 "Arabidopsis thaliana"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0005674 "transcription factor TFIIF complex" evidence=IEA;ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA;RCA] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=IEA;ISS] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
[GO:0000394 "RNA splicing, via endonucleolytic cleavage and
ligation" evidence=RCA] InterPro:IPR003196 InterPro:IPR011039
InterPro:IPR016640 Pfam:PF02270 PIRSF:PIRSF015849 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003743 KO:K03139
GO:GO:0006367 GO:GO:0008026 EMBL:AC006434 SUPFAM:SSF50916
GO:GO:0005674 eggNOG:COG5090 PANTHER:PTHR10445 HSSP:P13984
OMA:IDNDRGV EMBL:AF324673 EMBL:AF327423 EMBL:AF339714 EMBL:AY463609
EMBL:AK226474 IPI:IPI00532425 RefSeq:NP_177683.1 UniGene:At.15696
ProteinModelPortal:Q9LQZ4 SMR:Q9LQZ4 STRING:Q9LQZ4 PaxDb:Q9LQZ4
PRIDE:Q9LQZ4 EnsemblPlants:AT1G75510.1 GeneID:843887
KEGG:ath:AT1G75510 TAIR:At1g75510 HOGENOM:HOG000238322
InParanoid:Q9LQZ4 PhylomeDB:Q9LQZ4 ProtClustDB:CLSN2914241
ArrayExpress:Q9LQZ4 Genevestigator:Q9LQZ4 Uniprot:Q9LQZ4
Length = 261
Score = 685 (246.2 bits), Expect = 1.9e-67, P = 1.9e-67
Identities = 133/249 (53%), Positives = 178/249 (71%)
Query: 1 MWLMKCPALVSRSL-KIPSSDNDD---DDSARPVAKVILSIDPLQSNEDXXXXXXXXXTR 56
+WLMKCP +V ++ KI +S + DS +AK++ +DPL+ +
Sbjct: 16 IWLMKCPVVVDKAWHKIAASSSSSFASSDSPPDMAKIVREVDPLRDDSP---------PE 66
Query: 57 FTMELISTESGNAPKRYSMDMSKDLIPMSVFAESSNGKISVEGKIKNKFDMRPHHENMEN 116
F M ++ E GN PK Y+++M D +PM F++ + G + EGK+ +KFDM+P+ E +E
Sbjct: 67 FKMYMVGAEYGNMPKCYALNMFTDFVPMGGFSDVNQGCAAAEGKVDHKFDMKPYGETIEE 126
Query: 117 YGKLCRERTNKYMTKSRQIQVIDNDNGSHMRPMPGMM--ISTGFTEKKKPQP-KGSEVKR 173
Y +LCRERT+K M K+RQIQVIDND G HMRPMPGM+ +S+ EK+KP P K +EVKR
Sbjct: 127 YARLCRERTSKAMVKNRQIQVIDNDRGVHMRPMPGMLGLVSSNSKEKRKPPPVKQTEVKR 186
Query: 174 TRRDRGEMEDIMFKLFERQSNWTLRQLIQETDQPEQFLKDMLKDLCVYNNKGSNQGSYEL 233
TRRDRGE+E IMFKLFE Q NWTL+QL+QETDQP QFLK++L +LCVYN +GSNQG+YEL
Sbjct: 187 TRRDRGELEAIMFKLFEGQPNWTLKQLVQETDQPAQFLKEILNELCVYNKRGSNQGTYEL 246
Query: 234 KPEYKKAAD 242
KPEYKK+A+
Sbjct: 247 KPEYKKSAE 255
>DICTYBASE|DDB_G0287131 [details] [associations]
symbol:gtf2f2 "TFIIF subunit" species:44689
"Dictyostelium discoideum" [GO:0006367 "transcription initiation
from RNA polymerase II promoter" evidence=IEA;ISS] [GO:0005674
"transcription factor TFIIF complex" evidence=IEA;ISS] [GO:0005524
"ATP binding" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR003196 InterPro:IPR011039 Pfam:PF02270
dictyBase:DDB_G0287131 GO:GO:0005524 GenomeReviews:CM000153_GR
GO:GO:0006355 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0004386 KO:K03139 GO:GO:0006367 EMBL:AAFI02000098
SUPFAM:SSF50916 GO:GO:0005674 eggNOG:COG5090 PANTHER:PTHR10445
RefSeq:XP_637343.1 HSSP:P13984 STRING:Q54KT7
EnsemblProtists:DDB0231010 GeneID:8625965 KEGG:ddi:DDB_G0287131
ProtClustDB:CLSZ2728878 Uniprot:Q54KT7
Length = 241
Score = 208 (78.3 bits), Expect = 3.1e-19, Sum P(2) = 3.1e-19
Identities = 51/159 (32%), Positives = 86/159 (54%)
Query: 83 PMSVFAESSNGKISVEGKIKNKFDMRPHHENMENYGKLCRERTNKYMTKSRQIQVIDNDN 142
P+ +F+E +G +++EG I + D++ E+ + Y L + R KY TK+R QVID
Sbjct: 79 PLKIFSEDKDGALALEGNIGLRCDIKIDVESPQ-YRDLMKSRHTKYNTKTRMTQVIDESE 137
Query: 143 --GSHMRPMPGMMIST-GFTEKKKPQPKGSEVKRTRRDRGEMEDIMFKLFERQSNWTLRQ 199
+ + +ST G T+KKK S K+ + E+ D++F F + + L+
Sbjct: 138 LFTPTLFDANKVKVSTVGITQKKK-----STDKKEKLPEDEVLDLIFSAFRAEKHLDLKT 192
Query: 200 LIQETDQPEQFLKDMLKDLCVYNNKGSNQGSYELKPEYK 238
L T+QP+ LK +L+ +C+ N +G YELKPE++
Sbjct: 193 LESFTEQPKNHLKTILEKVCILNKRGPYHHLYELKPEFR 231
Score = 36 (17.7 bits), Expect = 3.1e-19, Sum P(2) = 3.1e-19
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 1 MWLMKCPALVSRS 13
+WL+K P +S S
Sbjct: 22 VWLIKVPKFLSES 34
>UNIPROTKB|E1BXD0 [details] [associations]
symbol:GTF2F2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0005674
"transcription factor TFIIF complex" evidence=IEA] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0015630 "microtubule cytoskeleton" evidence=IEA]
InterPro:IPR003196 InterPro:IPR011039 InterPro:IPR016640
Pfam:PF02270 PIRSF:PIRSF015849 GO:GO:0005524 GO:GO:0015630
Gene3D:1.10.10.10 InterPro:IPR011991 KO:K03139 GO:GO:0006367
GO:GO:0008026 SUPFAM:SSF50916 GO:GO:0005674 CTD:2963
GeneTree:ENSGT00390000016051 OMA:IVQKLEC PANTHER:PTHR10445
EMBL:AADN02005449 EMBL:AADN02005448 IPI:IPI00583886
RefSeq:XP_417039.2 UniGene:Gga.28057 Ensembl:ENSGALT00000027426
GeneID:418843 KEGG:gga:418843 NextBio:20821979 Uniprot:E1BXD0
Length = 262
Score = 201 (75.8 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 47/152 (30%), Positives = 87/152 (57%)
Query: 88 AES-SNGKISVEGKIKNKFDMRPHHENMENYGKLCRERTNKYMTKSRQIQVIDNDNGSHM 146
+ES S K+S+EG + + + RP ENY KL R + + R Q +D ++
Sbjct: 109 SESGSYDKLSLEGIVVQRAECRPAAS--ENYMKLKRFQIEESSKPVRLSQQLDKAVTTNY 166
Query: 147 RPMPGMMISTGFTEKKKPQPKGSEVKRTRRDRGEMEDIMFKLFERQSNWTLRQLIQETDQ 206
+P+ + + +KKK + KR R D+ ++ D++F FE+ + ++ L+ T Q
Sbjct: 167 KPVANHQYNIEYEKKKK-----EDGKRARADKQQVLDMLFSAFEKHQYYNIKDLVDITKQ 221
Query: 207 PEQFLKDMLKDLCVYNNKGSNQGSYELKPEYK 238
P +LK++L+++ +YN KG+++ ++ELKPEY+
Sbjct: 222 PVIYLKEILREIGIYNVKGTHKNTWELKPEYR 253
Score = 36 (17.7 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 6/12 (50%), Positives = 9/12 (75%)
Query: 1 MWLMKCPALVSR 12
MWL+K P +S+
Sbjct: 18 MWLVKVPKYLSQ 29
>UNIPROTKB|Q2T9L9 [details] [associations]
symbol:GTF2F2 "General transcription factor IIF subunit 2"
species:9913 "Bos taurus" [GO:0015630 "microtubule cytoskeleton"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=IEA] [GO:0005674 "transcription factor TFIIF complex"
evidence=IEA] InterPro:IPR003196 InterPro:IPR011039
InterPro:IPR016640 Pfam:PF02270 PIRSF:PIRSF015849 GO:GO:0005524
GO:GO:0015630 GO:GO:0006355 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 KO:K03139 GO:GO:0006367 GO:GO:0008026
SUPFAM:SSF50916 GO:GO:0005674 EMBL:BC111360 IPI:IPI00687093
RefSeq:NP_001033153.1 UniGene:Bt.87914 ProteinModelPortal:Q2T9L9
SMR:Q2T9L9 STRING:Q2T9L9 Ensembl:ENSBTAT00000048870 GeneID:509259
KEGG:bta:509259 CTD:2963 eggNOG:COG5090
GeneTree:ENSGT00390000016051 HOGENOM:HOG000294179
HOVERGEN:HBG001606 InParanoid:Q2T9L9 OMA:IVQKLEC OrthoDB:EOG4RNB9C
NextBio:20868899 PANTHER:PTHR10445 Uniprot:Q2T9L9
Length = 249
Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
Identities = 51/155 (32%), Positives = 87/155 (56%)
Query: 84 MSVFAESSNGKISVEGKIKNKFDMRPHHENMENYGKLCRERTNKYMTKSRQIQVIDNDNG 143
++VF ESS+ K+S+EG + + + RP ENY +L R + + R Q +D
Sbjct: 93 LTVFTESSSDKLSLEGIVVQRAECRPAAN--ENYMRLKRLQIEESSKPVRLSQQLDKVVT 150
Query: 144 SHMRPMPGMMISTGFTEKKKPQPKGSEVKRTRRDRGEMEDIMFKLFERQSNWTLRQLIQE 203
++ +P+ + + KKK + KR R D+ + D++F FE+ + L+ L+
Sbjct: 151 TNYKPVANHQYNIEYERKKK-----EDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDI 205
Query: 204 TDQPEQFLKDMLKDLCVYNNKGSNQGSYELKPEYK 238
T QP +LKD+LK++ V N KG ++ ++ELKPEY+
Sbjct: 206 TKQPVSYLKDILKEIGVQNVKGIHKNTWELKPEYR 240
>FB|FBgn0010421 [details] [associations]
symbol:TfIIFbeta "Transcription factor TFIIFbeta"
species:7227 "Drosophila melanogaster" [GO:0060261 "positive
regulation of transcription initiation from RNA polymerase II
promoter" evidence=IDA] [GO:0032968 "positive regulation of
transcription elongation from RNA polymerase II promoter"
evidence=IDA] [GO:0001096 "TFIIF-class transcription factor
binding" evidence=IPI] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0005634 "nucleus" evidence=NAS;IDA] [GO:0005674 "transcription
factor TFIIF complex" evidence=ISS;IDA] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=NAS] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=NAS] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003196 InterPro:IPR011039 InterPro:IPR016640
Pfam:PF02270 PIRSF:PIRSF015849 EMBL:AE014297 GO:GO:0005524
GO:GO:0003677 GO:GO:0045944 Gene3D:1.10.10.10 InterPro:IPR011991
KO:K03139 GO:GO:0006367 GO:GO:0032968 GO:GO:0008026 GO:GO:0060261
SUPFAM:SSF50916 GO:GO:0005674 eggNOG:COG5090
GeneTree:ENSGT00390000016051 OMA:IVQKLEC PANTHER:PTHR10445
EMBL:U25188 EMBL:U02461 EMBL:AY071514 PIR:S57336 RefSeq:NP_524305.2
UniGene:Dm.20167 ProteinModelPortal:P41900 SMR:P41900 IntAct:P41900
STRING:P41900 PaxDb:P41900 EnsemblMetazoa:FBtr0082310 GeneID:41290
KEGG:dme:Dmel_CG6538 CTD:41290 FlyBase:FBgn0010421
InParanoid:P41900 OrthoDB:EOG4FN30M PhylomeDB:P41900
GenomeRNAi:41290 NextBio:823133 Bgee:P41900 GermOnline:CG6538
Uniprot:P41900
Length = 277
Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
Identities = 73/249 (29%), Positives = 121/249 (48%)
Query: 1 MWLMKCPALVSRSL-KIPSSDNDDDDSAR----P--VAKVILSIDP----LQSNEDXXXX 49
+WL+K P +++ K P+ N D R P A+V LS+ P L E
Sbjct: 25 VWLVKVPKYIAQKWEKAPT--NMDVGKLRINKTPGQKAQVSLSLTPAVLALDPEEKIPTE 82
Query: 50 XXXXXTRFTMELISTESGNAPKRYSMDMSKDLIPMSVFAESSNGKISVEGKIKNKFDMRP 109
++ T + + S AP D K+ S A+ N K+ +EG+I K + RP
Sbjct: 83 HILDVSQVTKQTLGVFSHMAPS----D-GKENSTTSA-AQPDNEKLYMEGRIVQKLECRP 136
Query: 110 HHENMENYGKLCRERTNKYMTKSRQIQVIDNDNGSHMRPMPGMMISTGFTEKKKPQPKGS 169
+N Y KL E K R++Q ID + +P+ + + E+KK +
Sbjct: 137 IADNC--YMKLKLESIRKASEPQRRVQPIDKIV-QNFKPVKDHAHNIEYRERKK-----A 188
Query: 170 EVKRTRRDRGEMEDIMFKLFERQSNWTLRQLIQETDQPEQFLKDMLKDLCVYNNKGSNQG 229
E K+ R D+ + D++F FE+ + ++ L++ T+QP +LK++LKD+C YN K ++
Sbjct: 189 EGKKARDDKNAVMDMLFHAFEKHQYYNIKDLVKITNQPISYLKEILKDVCDYNMKNPHKN 248
Query: 230 SYELKPEYK 238
+ELK EY+
Sbjct: 249 MWELKKEYR 257
>MGI|MGI:1915955 [details] [associations]
symbol:Gtf2f2 "general transcription factor IIF, polypeptide
2" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005674 "transcription factor TFIIF complex"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0006367 "transcription
initiation from RNA polymerase II promoter" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] InterPro:IPR003196 InterPro:IPR011039
InterPro:IPR016640 Pfam:PF02270 PIRSF:PIRSF015849 MGI:MGI:1915955
GO:GO:0005524 GO:GO:0015630 GO:GO:0003677 GO:GO:0045944
Gene3D:1.10.10.10 InterPro:IPR011991 KO:K03139 GO:GO:0006367
GO:GO:0008026 SUPFAM:SSF50916 GO:GO:0005674 CTD:2963 eggNOG:COG5090
GeneTree:ENSGT00390000016051 HOGENOM:HOG000294179
HOVERGEN:HBG001606 OMA:IVQKLEC OrthoDB:EOG4RNB9C PANTHER:PTHR10445
EMBL:BC027173 IPI:IPI00135812 RefSeq:NP_081092.1 UniGene:Mm.20415
ProteinModelPortal:Q8R0A0 SMR:Q8R0A0 STRING:Q8R0A0
PhosphoSite:Q8R0A0 PaxDb:Q8R0A0 PRIDE:Q8R0A0
Ensembl:ENSMUST00000088922 GeneID:68705 KEGG:mmu:68705
InParanoid:Q8R0A0 NextBio:327734 Bgee:Q8R0A0 CleanEx:MM_GTF2F2
Genevestigator:Q8R0A0 GermOnline:ENSMUSG00000067995 Uniprot:Q8R0A0
Length = 249
Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
Identities = 50/155 (32%), Positives = 87/155 (56%)
Query: 84 MSVFAESSNGKISVEGKIKNKFDMRPHHENMENYGKLCRERTNKYMTKSRQIQVIDNDNG 143
++VF ESS+ K+S+EG + + + RP ENY KL R + + R Q +D
Sbjct: 93 LTVFTESSSDKLSLEGIVVQRAECRPAAS--ENYMKLKRLQIEESSKPVRLSQQLDKVVT 150
Query: 144 SHMRPMPGMMISTGFTEKKKPQPKGSEVKRTRRDRGEMEDIMFKLFERQSNWTLRQLIQE 203
++ +P+ + + KKK + KR R D+ + D++F FE+ + L+ L+
Sbjct: 151 TNYKPVANHQYNIEYERKKK-----EDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDI 205
Query: 204 TDQPEQFLKDMLKDLCVYNNKGSNQGSYELKPEYK 238
T QP +LK++LK++ + N KG ++ ++ELKPEY+
Sbjct: 206 TKQPVGYLKEILKEIGIQNVKGIHKNTWELKPEYR 240
>UNIPROTKB|Q63489 [details] [associations]
symbol:Gtf2f2 "RAP30" species:10116 "Rattus norvegicus"
[GO:0005674 "transcription factor TFIIF complex" evidence=IEA]
[GO:0006367 "transcription initiation from RNA polymerase II
promoter" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR003196 InterPro:IPR011039
InterPro:IPR016640 Pfam:PF02270 PIRSF:PIRSF015849 RGD:620772
GO:GO:0005524 GO:GO:0015630 Gene3D:1.10.10.10 InterPro:IPR011991
KO:K03139 GO:GO:0006367 GO:GO:0008026 EMBL:CH473951 SUPFAM:SSF50916
GO:GO:0005674 CTD:2963 GeneTree:ENSGT00390000016051
HOVERGEN:HBG001606 PANTHER:PTHR10445 HSSP:P13984 UniGene:Rn.11000
EMBL:BC091112 EMBL:D10665 IPI:IPI00393617 PIR:S35491
RefSeq:NP_112304.2 SMR:Q63489 STRING:Q63489
Ensembl:ENSRNOT00000044254 GeneID:81674 KEGG:rno:81674
InParanoid:Q63489 NextBio:615272 Genevestigator:Q63489
Uniprot:Q63489
Length = 249
Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
Identities = 50/155 (32%), Positives = 87/155 (56%)
Query: 84 MSVFAESSNGKISVEGKIKNKFDMRPHHENMENYGKLCRERTNKYMTKSRQIQVIDNDNG 143
++VF ESS+ K+S+EG + + + RP ENY KL R + + R Q +D
Sbjct: 93 LTVFTESSSDKLSLEGIVVQRAECRPAAS--ENYMKLKRLQIEESSKPVRLSQQLDKVVT 150
Query: 144 SHMRPMPGMMISTGFTEKKKPQPKGSEVKRTRRDRGEMEDIMFKLFERQSNWTLRQLIQE 203
++ +P+ + + KKK + KR R D+ + D++F FE+ + L+ L+
Sbjct: 151 TNYKPVANHQYNIEYERKKK-----EDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDI 205
Query: 204 TDQPEQFLKDMLKDLCVYNNKGSNQGSYELKPEYK 238
T QP +LK++LK++ + N KG ++ ++ELKPEY+
Sbjct: 206 TKQPVGYLKEILKEIGIQNVKGIHKNTWELKPEYR 240
>UNIPROTKB|P13984 [details] [associations]
symbol:GTF2F2 "General transcription factor IIF subunit 2"
species:9606 "Homo sapiens" [GO:0005674 "transcription factor TFIIF
complex" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006367 "transcription initiation from RNA polymerase II
promoter" evidence=TAS] [GO:0006368 "transcription elongation from
RNA polymerase II promoter" evidence=TAS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=TAS] [GO:0008380 "RNA
splicing" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0050434
"positive regulation of viral transcription" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0015630 "microtubule
cytoskeleton" evidence=IDA] Reactome:REACT_71 InterPro:IPR003196
InterPro:IPR011039 InterPro:IPR016640 Pfam:PF02270
PIRSF:PIRSF015849 GO:GO:0005524 Reactome:REACT_116125 GO:GO:0005654
GO:GO:0016032 GO:GO:0015630 GO:GO:0003677 EMBL:CH471075
Reactome:REACT_1675 GO:GO:0045944 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006368 KO:K03139 GO:GO:0006367
GO:GO:0000398 Reactome:REACT_1788 GO:GO:0008026 GO:GO:0006370
GO:GO:0050434 Reactome:REACT_1892 EMBL:AL138693 SUPFAM:SSF50916
GO:GO:0005674 PDB:1F3U PDBsum:1F3U CTD:2963 eggNOG:COG5090
HOGENOM:HOG000294179 HOVERGEN:HBG001606 OMA:IVQKLEC
OrthoDB:EOG4RNB9C PANTHER:PTHR10445 EMBL:X16901 EMBL:X59745
EMBL:AK291545 EMBL:BT019525 EMBL:AL138963 EMBL:BC001771
IPI:IPI00477686 PIR:S06141 PIR:S18677 RefSeq:NP_004119.1
UniGene:Hs.654582 PDB:1BBY PDB:2BBY PDBsum:1BBY PDBsum:2BBY
ProteinModelPortal:P13984 SMR:P13984 DIP:DIP-41680N IntAct:P13984
MINT:MINT-193667 STRING:P13984 PhosphoSite:P13984 DMDM:464519
PaxDb:P13984 PeptideAtlas:P13984 PRIDE:P13984 DNASU:2963
Ensembl:ENST00000340473 GeneID:2963 KEGG:hsa:2963 UCSC:uc001uzw.3
GeneCards:GC13P045694 HGNC:HGNC:4653 HPA:HPA006912 MIM:189969
neXtProt:NX_P13984 PharmGKB:PA29039 InParanoid:P13984
EvolutionaryTrace:P13984 GenomeRNAi:2963 NextBio:11746 Bgee:P13984
CleanEx:HS_GTF2F2 Genevestigator:P13984 GermOnline:ENSG00000188342
Uniprot:P13984
Length = 249
Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 50/155 (32%), Positives = 87/155 (56%)
Query: 84 MSVFAESSNGKISVEGKIKNKFDMRPHHENMENYGKLCRERTNKYMTKSRQIQVIDNDNG 143
++VF ESS+ K+S+EG + + + RP ENY +L R + + R Q +D
Sbjct: 93 LTVFTESSSDKLSLEGIVVQRAECRPAAS--ENYMRLKRLQIEESSKPVRLSQQLDKVVT 150
Query: 144 SHMRPMPGMMISTGFTEKKKPQPKGSEVKRTRRDRGEMEDIMFKLFERQSNWTLRQLIQE 203
++ +P+ + + KKK + KR R D+ + D++F FE+ + L+ L+
Sbjct: 151 TNYKPVANHQYNIEYERKKK-----EDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDI 205
Query: 204 TDQPEQFLKDMLKDLCVYNNKGSNQGSYELKPEYK 238
T QP +LK++LK++ V N KG ++ ++ELKPEY+
Sbjct: 206 TKQPVVYLKEILKEIGVQNVKGIHKNTWELKPEYR 240
>POMBASE|SPBC1198.13c [details] [associations]
symbol:tfg2 "transcription factor TFIIF complex beta
subunit Tfg2 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0000991 "core RNA polymerase II binding transcription factor
activity" evidence=ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISM]
[GO:0005524 "ATP binding" evidence=ISM] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005674 "transcription factor TFIIF complex"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006367 "transcription initiation
from RNA polymerase II promoter" evidence=ISS] [GO:0044732 "mitotic
spindle pole body" evidence=IDA] InterPro:IPR003196
InterPro:IPR011039 Pfam:PF02270 PomBase:SPBC1198.13c GO:GO:0005524
GO:GO:0006355 GO:GO:0044732 GO:GO:0003677 EMBL:CU329671
Gene3D:1.10.10.10 InterPro:IPR011991 GenomeReviews:CU329671_GR
GO:GO:0004003 KO:K03139 GO:GO:0006367 GO:GO:0000991 SUPFAM:SSF50916
GO:GO:0005674 eggNOG:COG5090 PANTHER:PTHR10445 PIR:T40615
RefSeq:NP_595082.1 ProteinModelPortal:O94424 IntAct:O94424
STRING:O94424 EnsemblFungi:SPBC1198.13c.1 GeneID:2539924
KEGG:spo:SPBC1198.13c HOGENOM:HOG000141627 OMA:WLVKIPK
OrthoDB:EOG4Q886J NextBio:20801067 Uniprot:O94424
Length = 307
Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
Identities = 57/188 (30%), Positives = 95/188 (50%)
Query: 63 STESGNAPKRYSMDMSKDLIPMS-VFAESSNGK----ISVEGKIKNKFDMRPHHENMENY 117
S E+ + PK Y++ + + S VF ES ++ G + ++ ++ P ++Y
Sbjct: 73 SPENADVPKIYNLRVMNKFVRNSYVFRESETSSSMKSTALVGTVAHECNVSPVIN--DDY 130
Query: 118 GKLCRERTNKYMTKSRQIQVIDNDNGSHMRPMP-GMMI--STGFTEKKKPQPKGSEVKRT 174
++ ++R R++Q+ID+ GS + P G +T F KP+ G +K +
Sbjct: 131 RRVMQKRALAASAPKRKVQMIDDRGGSLLAPGTLGSRSRSTTSFIRNVKPRT-GEGLKNS 189
Query: 175 RRDRGEMEDIMFKLFERQSNWTLRQLIQETDQPEQFLKDMLKDLCVYNNKGSNQGSYELK 234
R R E+ DI+FK FE WTL+ L + QPE +LK++L + + N +G Y LK
Sbjct: 190 RIPRNELLDILFKCFEDYEYWTLKGLREYVKQPEVYLKEVLDSIAILNKRGPYALKYSLK 249
Query: 235 PEYKKAAD 242
PEYK D
Sbjct: 250 PEYKGTMD 257
>RGD|620772 [details] [associations]
symbol:Gtf2f2 "general transcription factor IIF, polypeptide 2"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005674 "transcription factor TFIIF
complex" evidence=IEA] [GO:0006367 "transcription initiation from
RNA polymerase II promoter" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0015630
"microtubule cytoskeleton" evidence=IEA;ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IDA] InterPro:IPR003196 InterPro:IPR011039
InterPro:IPR016640 Pfam:PF02270 PIRSF:PIRSF015849 RGD:620772
GO:GO:0005524 GO:GO:0015630 GO:GO:0003677 GO:GO:0045944
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006367 GO:GO:0008026
SUPFAM:SSF50916 GO:GO:0005674 eggNOG:COG5090 HOGENOM:HOG000294179
HOVERGEN:HBG001606 OrthoDB:EOG4RNB9C PANTHER:PTHR10445 EMBL:L01267
IPI:IPI00327034 UniGene:Rn.11000 ProteinModelPortal:Q01750
SMR:Q01750 STRING:Q01750 PhosphoSite:Q01750 PRIDE:Q01750
UCSC:RGD:620772 InParanoid:Q01750 ArrayExpress:Q01750
Genevestigator:Q01750 GermOnline:ENSRNOG00000029316 Uniprot:Q01750
Length = 249
Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
Identities = 50/155 (32%), Positives = 86/155 (55%)
Query: 84 MSVFAESSNGKISVEGKIKNKFDMRPHHENMENYGKLCRERTNKYMTKSRQIQVIDNDNG 143
++VF ESS+ K+S+EG + + + RP ENY KL R + + R Q D
Sbjct: 93 LTVFTESSSDKLSLEGIVVQRAECRPAAS--ENYMKLKRLQIEESSKPVRLSQQADKVVT 150
Query: 144 SHMRPMPGMMISTGFTEKKKPQPKGSEVKRTRRDRGEMEDIMFKLFERQSNWTLRQLIQE 203
++ +P+ + + KKK + KR R D+ + D++F FE+ + L+ L+
Sbjct: 151 TNYKPVANHQYNIEYERKKK-----EDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDI 205
Query: 204 TDQPEQFLKDMLKDLCVYNNKGSNQGSYELKPEYK 238
T QP +LK++LK++ + N KG ++ ++ELKPEY+
Sbjct: 206 TKQPVGYLKEILKEIGIQNVKGIHKNTWELKPEYR 240
>UNIPROTKB|E2RGQ0 [details] [associations]
symbol:GTF2F2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=IEA] [GO:0005674 "transcription
factor TFIIF complex" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR003196 InterPro:IPR011039
InterPro:IPR016640 Pfam:PF02270 PIRSF:PIRSF015849 GO:GO:0005524
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006367 GO:GO:0008026
SUPFAM:SSF50916 GO:GO:0005674 GeneTree:ENSGT00390000016051
OMA:IVQKLEC PANTHER:PTHR10445 EMBL:AAEX03017756
Ensembl:ENSCAFT00000020476 Uniprot:E2RGQ0
Length = 245
Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 49/155 (31%), Positives = 87/155 (56%)
Query: 84 MSVFAESSNGKISVEGKIKNKFDMRPHHENMENYGKLCRERTNKYMTKSRQIQVIDNDNG 143
++VF ESS+ K+S+EG + + + RP E Y +L R + + R Q +D
Sbjct: 93 LTVFTESSSDKLSLEGIVVQRAECRP--ATSEKYMRLKRLQIEESSKPVRLSQQLDKVVT 150
Query: 144 SHMRPMPGMMISTGFTEKKKPQPKGSEVKRTRRDRGEMEDIMFKLFERQSNWTLRQLIQE 203
++ +P+ + + KKK + KR R D+ + D++F FE+ + L+ L+
Sbjct: 151 TNYKPVANHQYNIEYERKKK-----EDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDI 205
Query: 204 TDQPEQFLKDMLKDLCVYNNKGSNQGSYELKPEYK 238
T QP +LK++LK++ V N KG+++ ++ELKPEY+
Sbjct: 206 TKQPVGYLKEILKEIGVQNVKGTHK-TWELKPEYR 239
>ZFIN|ZDB-GENE-050417-374 [details] [associations]
symbol:gtf2f2b "general transcription factor IIF,
polypeptide 2b" species:7955 "Danio rerio" [GO:0005634 "nucleus"
evidence=IEA] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0005674 "transcription factor TFIIF
complex" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR003196 InterPro:IPR011039
InterPro:IPR016640 Pfam:PF02270 PIRSF:PIRSF015849
ZFIN:ZDB-GENE-050417-374 GO:GO:0005524 Gene3D:1.10.10.10
InterPro:IPR011991 KO:K03139 GO:GO:0006367 GO:GO:0008026
SUPFAM:SSF50916 GO:GO:0005674 HOGENOM:HOG000294179
HOVERGEN:HBG001606 PANTHER:PTHR10445 EMBL:BC092783 IPI:IPI00498385
RefSeq:NP_001017832.1 UniGene:Dr.87723 ProteinModelPortal:Q568N8
SMR:Q568N8 STRING:Q568N8 GeneID:100148942 KEGG:dre:100148942
CTD:100148942 NextBio:20792568 Uniprot:Q568N8
Length = 256
Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
Identities = 47/160 (29%), Positives = 93/160 (58%)
Query: 84 MSVFAESSNGKISVEGKIKNKFDMRPHHENMENYGKLCRERTNKYMTKSRQIQVIDNDNG 143
++VF ESS+ KI++EG + + + RP E+Y KL + + + R Q ++
Sbjct: 94 LAVFTESSD-KIALEGMVVQRAECRPAVS--ESYMKLKKLQIEESTKPLRFSQRLEKAIT 150
Query: 144 SHMRPMPGMMISTGFTEKKKPQPKGSEVKRTRRDRGEMEDIMFKLFERQSNWTLRQLIQE 203
++ +P+ + + ++KK E KR R D+ ++ +++F FE+ + +R L+
Sbjct: 151 TNYKPVSNHSHNLEYEKRKK-----EEGKRARADKQKVLEMLFSAFEKHQFYNIRDLVDI 205
Query: 204 TDQPEQFLKDMLKDLCVYNNKGSNQGSYELKPEYKKAADG 243
T QP +LK++L+++ VYN++G ++ ++ELKPEY+ +G
Sbjct: 206 TKQPVIYLKEILREIGVYNSRGPHKSTWELKPEYRHYQEG 245
>ZFIN|ZDB-GENE-040625-131 [details] [associations]
symbol:gtf2f2a "general transcription factor IIF,
polypeptide 2a" species:7955 "Danio rerio" [GO:0005634 "nucleus"
evidence=IEA] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0005674 "transcription factor TFIIF
complex" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR003196 InterPro:IPR011039
InterPro:IPR016640 Pfam:PF02270 PIRSF:PIRSF015849
ZFIN:ZDB-GENE-040625-131 GO:GO:0005524 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006367 GO:GO:0008026 SUPFAM:SSF50916
GO:GO:0005674 HOVERGEN:HBG001606 PANTHER:PTHR10445 HSSP:P13984
EMBL:BC071444 IPI:IPI00832374 UniGene:Dr.74541
ProteinModelPortal:Q6IQG2 SMR:Q6IQG2 STRING:Q6IQG2 PRIDE:Q6IQG2
InParanoid:Q6IQG2 NextBio:20818885 ArrayExpress:Q6IQG2 Bgee:Q6IQG2
Uniprot:Q6IQG2
Length = 265
Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
Identities = 42/149 (28%), Positives = 83/149 (55%)
Query: 90 SSNGKISVEGKIKNKFDMRPHHENMENYGKLCRERTNKYMTKSRQIQVIDNDNGSHMRPM 149
S KI++ G + + + RP E+Y +L + + + R Q +D ++ +P+
Sbjct: 115 SGPDKIALGGVVVQRAECRPAVS--ESYMRLKKLQIEELSKPLRFSQQLDKAVTTNYKPV 172
Query: 150 PGMMISTGFTEKKKPQPKGSEVKRTRRDRGEMEDIMFKLFERQSNWTLRQLIQETDQPEQ 209
+ + ++KK E KR R D+ ++ D++F FE+ + ++ L+ T QP
Sbjct: 173 ANHAYNLDYEKRKK-----EEGKRARADKQQVLDMLFSAFEKHQFYNIKDLVDITKQPVI 227
Query: 210 FLKDMLKDLCVYNNKGSNQGSYELKPEYK 238
+LK++L+D+ +YN KG+++ ++ELKPEY+
Sbjct: 228 YLKEILRDIGIYNVKGTHKNTWELKPEYR 256
>UNIPROTKB|G3X7X9 [details] [associations]
symbol:LOC100850122 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=IEA] [GO:0005674 "transcription
factor TFIIF complex" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
InterPro:IPR003196 InterPro:IPR011039 Pfam:PF02270 GO:GO:0005524
GO:GO:0003824 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006367
EMBL:DAAA02009128 SUPFAM:SSF50916 GO:GO:0005674
GeneTree:ENSGT00390000016051 PANTHER:PTHR10445 UniGene:Bt.102696
Ensembl:ENSBTAT00000048631 OMA:NEVECEL Uniprot:G3X7X9
Length = 257
Score = 162 (62.1 bits), Expect = 5.9e-12, Sum P(2) = 5.9e-12
Identities = 39/155 (25%), Positives = 83/155 (53%)
Query: 84 MSVFAESSNGKISVEGKIKNKFDMRPHHENMENYGKLCRERTNKYMTKSRQIQVIDNDNG 143
++V E + S++G + ++ + RP ENY +L R + +R +Q ++
Sbjct: 101 LTVLTEHEPDQFSLQGTVVHRGECRPAPS--ENYMRLKRMQIEGASKPARTVQKLEKVVT 158
Query: 144 SHMRPMPGMMISTGFTEKKKPQPKGSEVKRTRRDRGEMEDIMFKLFERQSNWTLRQLIQE 203
++ +P+ + + ++KK G KR + D+ ++ ++F FE+ + ++ L+
Sbjct: 159 TNYKPVANHQYNIEYEKRKKET--G---KRVKADKDQVLTLLFAAFEKHQYYNIKDLVGI 213
Query: 204 TDQPEQFLKDMLKDLCVYNNKGSNQGSYELKPEYK 238
T QP +LK++L ++ V N KG ++ ++ELK EY+
Sbjct: 214 TMQPVVYLKEILNEIGVRNVKGPHKNTWELKEEYR 248
Score = 36 (17.7 bits), Expect = 5.9e-12, Sum P(2) = 5.9e-12
Identities = 6/12 (50%), Positives = 9/12 (75%)
Query: 1 MWLMKCPALVSR 12
MWL+K P +S+
Sbjct: 26 MWLVKVPKYLSQ 37
>UNIPROTKB|I3LJ09 [details] [associations]
symbol:GTF2F2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006367 "transcription initiation from RNA polymerase
II promoter" evidence=IEA] [GO:0005674 "transcription factor TFIIF
complex" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003196 Pfam:PF02270 GO:GO:0005524 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006367 GO:GO:0005674
GeneTree:ENSGT00390000016051 PANTHER:PTHR10445
Ensembl:ENSSSCT00000022245 OMA:RRRDHIH Uniprot:I3LJ09
Length = 121
Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 35/116 (30%), Positives = 65/116 (56%)
Query: 123 ERTNKYMTKSRQIQVIDNDNGSHMRPMPGMMISTGFTEKKKPQPKGSEVKRTRRDRGEME 182
E ++K + S+Q+ + N +P+ + + KKK + KR R D+ +
Sbjct: 5 EESSKPVRLSQQLDKVVTTN---YKPVANHQYNIEYERKKK-----EDGKRARADKQYVL 56
Query: 183 DIMFKLFERQSNWTLRQLIQETDQPEQFLKDMLKDLCVYNNKGSNQGSYELKPEYK 238
D++F FE+ + L+ L+ T QP +LK++LK++ + N KG ++ ++ELKPEY+
Sbjct: 57 DMLFSAFEKHQYYNLKDLVDITKQPVSYLKEILKEIGIQNVKGIHKNTWELKPEYR 112
>SGD|S000003237 [details] [associations]
symbol:TFG2 "TFIIF (Transcription Factor II) middle subunit"
species:4932 "Saccharomyces cerevisiae" [GO:0006367 "transcription
initiation from RNA polymerase II promoter" evidence=IEA;IDA]
[GO:0051123 "RNA polymerase II transcriptional preinitiation
complex assembly" evidence=IC] [GO:0001174 "transcriptional start
site selection at RNA polymerase II promoter" evidence=IMP]
[GO:0005674 "transcription factor TFIIF complex" evidence=IEA;IDA]
[GO:0001111 "promoter clearance from RNA polymerase II promoter"
evidence=IC] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=IDA] [GO:0000991 "core RNA polymerase II binding
transcription factor activity" evidence=IDA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001139 "core RNA polymerase II recruiting transcription factor
activity" evidence=IC] InterPro:IPR003196 InterPro:IPR011039
Pfam:PF02270 SGD:S000003237 GO:GO:0005524 GO:GO:0006355
EMBL:BK006941 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0004386 GO:GO:0006368 RefSeq:NP_011519.3 GeneID:852888
KEGG:sce:YGR005C KO:K03139 GO:GO:0000991 GO:GO:0051123 EMBL:U13016
GO:GO:0001111 KO:K08508 RefSeq:NP_011523.3 GeneID:852892
KEGG:sce:YGR009C GO:GO:0001174 SUPFAM:SSF50916 GO:GO:0005674
eggNOG:COG5090 GeneTree:ENSGT00390000016051 PANTHER:PTHR10445
OrthoDB:EOG4Q886J EMBL:Z72790 EMBL:AY692871 PIR:S64294
ProteinModelPortal:P41896 SMR:P41896 DIP:DIP-1152N IntAct:P41896
MINT:MINT-562451 STRING:P41896 PaxDb:P41896 PeptideAtlas:P41896
EnsemblFungi:YGR005C CYGD:YGR005c HOGENOM:HOG000000947 OMA:KTIPKKT
NextBio:972547 Genevestigator:P41896 GermOnline:YGR005C
Uniprot:P41896
Length = 400
Score = 163 (62.4 bits), Expect = 3.4e-10, P = 3.4e-10
Identities = 48/151 (31%), Positives = 74/151 (49%)
Query: 94 KISVEGKIKNKFDMRPHHENMENYGKLCRERTN--KYMTKSRQIQVIDNDNGSHMRPMPG 151
K ++ G + ++ + P N NY K+ +R N K K R I +D G M G
Sbjct: 211 KTAIVGTVCHECQVMPSM-NDPNYHKIVEQRRNIVKLNNKER-ITTLDETVGVTMSHT-G 267
Query: 152 MMI---STGFTEKKKPQPKGSEVKRTRRDRGEMEDIMFKLFERQSNWTLRQLIQETDQPE 208
M + ++ F + + + K S +K R + E+ D +FKLF+ W+L+ L + T QPE
Sbjct: 268 MSMRSDNSNFLKVGREKAK-SNIKSIRMPKKEILDYLFKLFDEYDYWSLKGLKERTRQPE 326
Query: 209 QFLKDMLKDLCVYNNKGSNQGSYELKPEYKK 239
LK+ L + KG Y L+PEYKK
Sbjct: 327 AHLKECLDKVATLVKKGPYAFKYTLRPEYKK 357
>WB|WBGene00012694 [details] [associations]
symbol:Y39B6A.36 species:6239 "Caenorhabditis elegans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005674 "transcription
factor TFIIF complex" evidence=IEA] [GO:0006367 "transcription
initiation from RNA polymerase II promoter" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] InterPro:IPR003196 InterPro:IPR011039
InterPro:IPR016640 Pfam:PF02270 PIRSF:PIRSF015849 GO:GO:0005524
GO:GO:0009792 GO:GO:0002009 GO:GO:0006898 GO:GO:0040010
GO:GO:0000003 Gene3D:1.10.10.10 InterPro:IPR011991 KO:K03139
GO:GO:0006367 GO:GO:0008026 EMBL:AL132948 SUPFAM:SSF50916
GO:GO:0005674 eggNOG:COG5090 GeneTree:ENSGT00390000016051
HOGENOM:HOG000294179 PANTHER:PTHR10445 HSSP:P13984
RefSeq:NP_741661.1 ProteinModelPortal:Q8MYM8 SMR:Q8MYM8
STRING:Q8MYM8 PaxDb:Q8MYM8 EnsemblMetazoa:Y39B6A.36 GeneID:180243
KEGG:cel:CELE_Y39B6A.36 UCSC:Y39B6A.36 CTD:180243
WormBase:Y39B6A.36 InParanoid:Q8MYM8 OMA:IDNDRGV NextBio:908550
Uniprot:Q8MYM8
Length = 263
Score = 152 (58.6 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 43/161 (26%), Positives = 77/161 (47%)
Query: 77 MSKDLIPMSVFAESSNGKISVEGKIKNKFDMRPHHENMENYGKLCRERTNKYMTKSRQIQ 136
+S+D + A GK+++EG+I K + RP + Y K+ K + ++
Sbjct: 101 LSEDKQGLGADAPIKTGKLAIEGRIIKKAECRPPATS--KYMKMKLAHIVKNTQPKKTVK 158
Query: 137 VIDNDNGSHMRPMPGMMISTGFTEKKKPQPKGSEVKRTRRDRGEMEDIMFKLFERQSNWT 196
+I+ +P +S + K + K K R DR + +FK FE+ S +
Sbjct: 159 MIEKA-AVKFKP-----VSVHAEDMIKSKQKKDGAKTYRADRDVLRGALFKAFEKHSFYR 212
Query: 197 LRQLIQETDQPEQFLKDMLKDLCVYNNKGSNQGSYELKPEY 237
L+ L Q QP ++K++L+++ VYN ++ + LKPEY
Sbjct: 213 LQDLQQLLQQPVSYVKEVLQEIAVYNTAPPHKSLWCLKPEY 253
>CGD|CAL0005275 [details] [associations]
symbol:orf19.2111 species:5476 "Candida albicans" [GO:0005674
"transcription factor TFIIF complex" evidence=IEA] [GO:0005816
"spindle pole body" evidence=IEA] [GO:0006368 "transcription
elongation from RNA polymerase II promoter" evidence=IEA]
[GO:0001174 "transcriptional start site selection at RNA polymerase
II promoter" evidence=IEA] [GO:0000991 "core RNA polymerase II
binding transcription factor activity" evidence=IEA]
InterPro:IPR003196 InterPro:IPR011039 Pfam:PF02270 CGD:CAL0005275
GO:GO:0005524 GO:GO:0003824 Gene3D:1.10.10.10 InterPro:IPR011991
KO:K03139 GO:GO:0006367 EMBL:AACQ01000031 EMBL:AACQ01000030
SUPFAM:SSF50916 GO:GO:0005674 eggNOG:COG5090 PANTHER:PTHR10445
RefSeq:XP_719557.1 RefSeq:XP_719682.1 ProteinModelPortal:Q5ACV6
STRING:Q5ACV6 GeneID:3638721 GeneID:3638902 KEGG:cal:CaO19.2111
KEGG:cal:CaO19.9659 Uniprot:Q5ACV6
Length = 381
Score = 141 (54.7 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 43/167 (25%), Positives = 74/167 (44%)
Query: 79 KDLIPMSVFAESSNGKISVEGKIKNKFDMRPHHENMENYGKLCRERTNKYMTKSRQIQVI 138
K IP F ++ K S+ GK+ + + P + +G+ + N K R +
Sbjct: 187 KKYIP---FVKTIPKKTSLMGKVCHDCTVVPARTGSK-HGESLMKHQNMTQGKERPKVTL 242
Query: 139 DNDNGSHMRPMPGMMISTGFTE--KKKPQPKGSEVKRT-RRDRGEMEDIMFKLFERQSNW 195
N+ ++ G I K Q K RT R + ++ D++F+LFE W
Sbjct: 243 LNEIPGVIQSNAGPSIKGNAASIFLKSTQGKNKSEGRTIRMPKKDLLDLLFRLFEEYEYW 302
Query: 196 TLRQLIQETDQPEQFLKDMLKDLCVYNNKGSNQGSYELKPEYKKAAD 242
+++ L + T QPE +LK+ L+ + +G Y LK EY++ D
Sbjct: 303 SMKGLKERTRQPESYLKESLESIATLIKRGPYTSKYTLKAEYRRLRD 349
>ASPGD|ASPL0000051527 [details] [associations]
symbol:AN1538 species:162425 "Emericella nidulans"
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=IEA] [GO:0001174 "transcriptional start site
selection at RNA polymerase II promoter" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0044732 "mitotic spindle pole body" evidence=IEA]
[GO:0005674 "transcription factor TFIIF complex" evidence=IEA]
[GO:0000991 "core RNA polymerase II binding transcription factor
activity" evidence=IEA] InterPro:IPR003196 InterPro:IPR011039
Pfam:PF02270 GO:GO:0005524 GO:GO:0003824 EMBL:BN001307
Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:AACD01000025
GO:GO:0003743 KO:K03139 GO:GO:0006367 SUPFAM:SSF50916 GO:GO:0005674
eggNOG:COG5090 PANTHER:PTHR10445 OMA:KTIPKKT RefSeq:XP_659142.1
ProteinModelPortal:Q5BD42 STRING:Q5BD42
EnsemblFungi:CADANIAT00008165 GeneID:2875661 KEGG:ani:AN1538.2
HOGENOM:HOG000158361 OrthoDB:EOG4J6W0H Uniprot:Q5BD42
Length = 357
Score = 131 (51.2 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 36/149 (24%), Positives = 71/149 (47%)
Query: 94 KISVEGKIKNKFDMRPHHENMENYGKLCRERTNKYMTKSRQIQVIDNDNGSHMRPMPGMM 153
+ ++ G++K +F+ P EN E + L ++ + + R+++ +D ++ +
Sbjct: 167 RTALVGQVKEEFNCLPV-EN-EEFRILSEKKALEALKPRREVKYVDKMPAKLLQQRHALP 224
Query: 154 ISTG-FTEKKKPQP-KGSEVKRTRRDRGEMEDIMFKLFERQSNWTLRQLIQETDQPEQFL 211
G F + KP K E K TR + E+ D++++ F W + L QPE +L
Sbjct: 225 GEQGAFVQATKPAKLKAQENKTTRMPQNELLDLIYQCFREYRYWPFKTLKARLRQPEAYL 284
Query: 212 KDMLKDLCVYNNKGSNQGSYELKPEYKKA 240
K L+ + G ++ELKPE +++
Sbjct: 285 KQTLEMIAHLVKSGDFAMTWELKPEARES 313
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.313 0.129 0.372 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 246 237 0.00090 113 3 11 23 0.48 33
32 0.43 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 19
No. of states in DFA: 594 (63 KB)
Total size of DFA: 184 KB (2106 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 24.08u 0.12s 24.20t Elapsed: 00:00:02
Total cpu time: 24.08u 0.12s 24.20t Elapsed: 00:00:02
Start: Sat May 11 08:55:27 2013 End: Sat May 11 08:55:29 2013