BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025926
(246 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2T9L9|T2FB_BOVIN General transcription factor IIF subunit 2 OS=Bos taurus GN=GTF2F2
PE=2 SV=1
Length = 249
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 87/155 (56%), Gaps = 7/155 (4%)
Query: 84 MSVFAESSNGKISVEGKIKNKFDMRPHHENMENYGKLCRERTNKYMTKSRQIQVIDNDNG 143
++VF ESS+ K+S+EG + + + RP ENY +L R + + R Q +D
Sbjct: 93 LTVFTESSSDKLSLEGIVVQRAECRPAAN--ENYMRLKRLQIEESSKPVRLSQQLDKVVT 150
Query: 144 SHMRPMPGMMISTGFTEKKKPQPKGSEVKRTRRDRGEMEDIMFKLFERQSNWTLRQLIQE 203
++ +P+ + + KKK + KR R D+ + D++F FE+ + L+ L+
Sbjct: 151 TNYKPVANHQYNIEYERKKK-----EDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDI 205
Query: 204 TDQPEQFLKDMLKDLCVYNNKGSNQGSYELKPEYK 238
T QP +LKD+LK++ V N KG ++ ++ELKPEY+
Sbjct: 206 TKQPVSYLKDILKEIGVQNVKGIHKNTWELKPEYR 240
>sp|Q8R0A0|T2FB_MOUSE General transcription factor IIF subunit 2 OS=Mus musculus
GN=Gtf2f2 PE=1 SV=1
Length = 249
Score = 84.3 bits (207), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 87/155 (56%), Gaps = 7/155 (4%)
Query: 84 MSVFAESSNGKISVEGKIKNKFDMRPHHENMENYGKLCRERTNKYMTKSRQIQVIDNDNG 143
++VF ESS+ K+S+EG + + + RP ENY KL R + + R Q +D
Sbjct: 93 LTVFTESSSDKLSLEGIVVQRAECRP--AASENYMKLKRLQIEESSKPVRLSQQLDKVVT 150
Query: 144 SHMRPMPGMMISTGFTEKKKPQPKGSEVKRTRRDRGEMEDIMFKLFERQSNWTLRQLIQE 203
++ +P+ + + KKK + KR R D+ + D++F FE+ + L+ L+
Sbjct: 151 TNYKPVANHQYNIEYERKKK-----EDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDI 205
Query: 204 TDQPEQFLKDMLKDLCVYNNKGSNQGSYELKPEYK 238
T QP +LK++LK++ + N KG ++ ++ELKPEY+
Sbjct: 206 TKQPVGYLKEILKEIGIQNVKGIHKNTWELKPEYR 240
>sp|P13984|T2FB_HUMAN General transcription factor IIF subunit 2 OS=Homo sapiens
GN=GTF2F2 PE=1 SV=2
Length = 249
Score = 84.0 bits (206), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 87/155 (56%), Gaps = 7/155 (4%)
Query: 84 MSVFAESSNGKISVEGKIKNKFDMRPHHENMENYGKLCRERTNKYMTKSRQIQVIDNDNG 143
++VF ESS+ K+S+EG + + + RP ENY +L R + + R Q +D
Sbjct: 93 LTVFTESSSDKLSLEGIVVQRAECRP--AASENYMRLKRLQIEESSKPVRLSQQLDKVVT 150
Query: 144 SHMRPMPGMMISTGFTEKKKPQPKGSEVKRTRRDRGEMEDIMFKLFERQSNWTLRQLIQE 203
++ +P+ + + KKK + KR R D+ + D++F FE+ + L+ L+
Sbjct: 151 TNYKPVANHQYNIEYERKKK-----EDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDI 205
Query: 204 TDQPEQFLKDMLKDLCVYNNKGSNQGSYELKPEYK 238
T QP +LK++LK++ V N KG ++ ++ELKPEY+
Sbjct: 206 TKQPVVYLKEILKEIGVQNVKGIHKNTWELKPEYR 240
>sp|Q01750|T2FB_RAT General transcription factor IIF subunit 2 OS=Rattus norvegicus
GN=Gtf2f2 PE=2 SV=1
Length = 249
Score = 83.2 bits (204), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 86/155 (55%), Gaps = 7/155 (4%)
Query: 84 MSVFAESSNGKISVEGKIKNKFDMRPHHENMENYGKLCRERTNKYMTKSRQIQVIDNDNG 143
++VF ESS+ K+S+EG + + + RP ENY KL R + + R Q D
Sbjct: 93 LTVFTESSSDKLSLEGIVVQRAECRP--AASENYMKLKRLQIEESSKPVRLSQQADKVVT 150
Query: 144 SHMRPMPGMMISTGFTEKKKPQPKGSEVKRTRRDRGEMEDIMFKLFERQSNWTLRQLIQE 203
++ +P+ + + KKK + KR R D+ + D++F FE+ + L+ L+
Sbjct: 151 TNYKPVANHQYNIEYERKKK-----EDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDI 205
Query: 204 TDQPEQFLKDMLKDLCVYNNKGSNQGSYELKPEYK 238
T QP +LK++LK++ + N KG ++ ++ELKPEY+
Sbjct: 206 TKQPVGYLKEILKEIGIQNVKGIHKNTWELKPEYR 240
>sp|O94424|T2FB_SCHPO Transcription initiation factor IIF subunit beta
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tfg2 PE=1 SV=1
Length = 307
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 97/191 (50%), Gaps = 15/191 (7%)
Query: 63 STESGNAPKRYSMDMSKDLIPMS-VFAES----SNGKISVEGKIKNKFDMRPHHENMENY 117
S E+ + PK Y++ + + S VF ES S ++ G + ++ ++ P ++Y
Sbjct: 73 SPENADVPKIYNLRVMNKFVRNSYVFRESETSSSMKSTALVGTVAHECNVSPVIN--DDY 130
Query: 118 GKLCRERTNKYMTKSRQIQVIDNDNGSHMRPMPGMMIS-----TGFTEKKKPQPKGSEVK 172
++ ++R R++Q+ID+ GS + PG + S T F KP+ G +K
Sbjct: 131 RRVMQKRALAASAPKRKVQMIDDRGGSLL--APGTLGSRSRSTTSFIRNVKPR-TGEGLK 187
Query: 173 RTRRDRGEMEDIMFKLFERQSNWTLRQLIQETDQPEQFLKDMLKDLCVYNNKGSNQGSYE 232
+R R E+ DI+FK FE WTL+ L + QPE +LK++L + + N +G Y
Sbjct: 188 NSRIPRNELLDILFKCFEDYEYWTLKGLREYVKQPEVYLKEVLDSIAILNKRGPYALKYS 247
Query: 233 LKPEYKKAADG 243
LKPEYK D
Sbjct: 248 LKPEYKGTMDA 258
>sp|P41900|T2FB_DROME General transcription factor IIF subunit 2 OS=Drosophila
melanogaster GN=TfIIFbeta PE=2 SV=2
Length = 277
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 118/250 (47%), Gaps = 29/250 (11%)
Query: 1 MWLMKCPALVSRS------------LKIPSSDNDDDDSARPVAKVILSIDPLQSNEDSSS 48
+WL+K P +++ L+I + + + +L++DP +
Sbjct: 25 VWLVKVPKYIAQKWEKAPTNMDVGKLRINKTPGQKAQVSLSLTPAVLALDPEEKIPTEHI 84
Query: 49 SSSSSSTRFTMELISTESGNAPKRYSMDMSKDLIPMSVFAESSNGKISVEGKIKNKFDMR 108
S T+ T+ + S + + K S + A+ N K+ +EG+I K + R
Sbjct: 85 LDVSQVTKQTLGVFSHMAPSDGKENSTTSA---------AQPDNEKLYMEGRIVQKLECR 135
Query: 109 PHHENMENYGKLCRERTNKYMTKSRQIQVIDNDNGSHMRPMPGMMISTGFTEKKKPQPKG 168
P +N Y KL E K R++Q ID + +P+ + + E+KK
Sbjct: 136 PIADNC--YMKLKLESIRKASEPQRRVQPIDK-IVQNFKPVKDHAHNIEYRERKK----- 187
Query: 169 SEVKRTRRDRGEMEDIMFKLFERQSNWTLRQLIQETDQPEQFLKDMLKDLCVYNNKGSNQ 228
+E K+ R D+ + D++F FE+ + ++ L++ T+QP +LK++LKD+C YN K ++
Sbjct: 188 AEGKKARDDKNAVMDMLFHAFEKHQYYNIKDLVKITNQPISYLKEILKDVCDYNMKNPHK 247
Query: 229 GSYELKPEYK 238
+ELK EY+
Sbjct: 248 NMWELKKEYR 257
>sp|Q03123|T2FB_XENLA General transcription factor IIF subunit 2 OS=Xenopus laevis
GN=gtf2f2 PE=2 SV=1
Length = 264
Score = 79.0 bits (193), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 93/167 (55%), Gaps = 19/167 (11%)
Query: 84 MSVFAESSNG------------KISVEGKIKNKFDMRPHHENMENYGKLCRERTNKYMTK 131
++V ES +G K+++EG + ++ + RP +NY ++ R++ +
Sbjct: 96 LTVLTESLSGQSEDKSENRVIDKLALEGIVVHRAECRP--AASDNYMQMKRKQIEESSKP 153
Query: 132 SRQIQVIDNDNGSHMRPMPGMMISTGFTEKKKPQPKGSEVKRTRRDRGEMEDIMFKLFER 191
RQ Q ++ S+ +P+ + + +KKK + KR R D+ ++ D++F FE+
Sbjct: 154 KRQSQQLEKAVTSNYKPVSNHQYNIEYEKKKK-----DDGKRARVDKHQVLDMLFSAFEK 208
Query: 192 QSNWTLRQLIQETDQPEQFLKDMLKDLCVYNNKGSNQGSYELKPEYK 238
+ ++ L+ T QP +LK++L+D+ +YN KG+++ ++ELKPEY+
Sbjct: 209 HQYYNIKDLVDITKQPVTYLKEILRDIGIYNMKGTHKNTWELKPEYR 255
>sp|Q54KT7|T2FB_DICDI General transcription factor IIF subunit 2 OS=Dictyostelium
discoideum GN=gtf2f2 PE=3 SV=2
Length = 241
Score = 68.6 bits (166), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 84/159 (52%), Gaps = 9/159 (5%)
Query: 83 PMSVFAESSNGKISVEGKIKNKFDMRPHHENMENYGKLCRERTNKYMTKSRQIQVIDNDN 142
P+ +F+E +G +++EG I + D++ E+ + Y L + R KY TK+R QVID
Sbjct: 79 PLKIFSEDKDGALALEGNIGLRCDIKIDVESPQ-YRDLMKSRHTKYNTKTRMTQVIDESE 137
Query: 143 --GSHMRPMPGMMIST-GFTEKKKPQPKGSEVKRTRRDRGEMEDIMFKLFERQSNWTLRQ 199
+ + +ST G T Q K S K+ + E+ D++F F + + L+
Sbjct: 138 LFTPTLFDANKVKVSTVGIT-----QKKKSTDKKEKLPEDEVLDLIFSAFRAEKHLDLKT 192
Query: 200 LIQETDQPEQFLKDMLKDLCVYNNKGSNQGSYELKPEYK 238
L T+QP+ LK +L+ +C+ N +G YELKPE++
Sbjct: 193 LESFTEQPKNHLKTILEKVCILNKRGPYHHLYELKPEFR 231
>sp|P41896|T2FB_YEAST Transcription initiation factor IIF subunit beta OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TFG2 PE=1
SV=2
Length = 400
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 63/128 (49%), Gaps = 6/128 (4%)
Query: 116 NYGKLCRERTNKY-MTKSRQIQVIDNDNGSHMRPMPGMMI---STGFTEKKKPQPKGSEV 171
NY K+ +R N + +I +D G M GM + ++ F + + + K S +
Sbjct: 232 NYHKIVEQRRNIVKLNNKERITTLDETVGVTM-SHTGMSMRSDNSNFLKVGREKAK-SNI 289
Query: 172 KRTRRDRGEMEDIMFKLFERQSNWTLRQLIQETDQPEQFLKDMLKDLCVYNNKGSNQGSY 231
K R + E+ D +FKLF+ W+L+ L + T QPE LK+ L + KG Y
Sbjct: 290 KSIRMPKKEILDYLFKLFDEYDYWSLKGLKERTRQPEAHLKECLDKVATLVKKGPYAFKY 349
Query: 232 ELKPEYKK 239
L+PEYKK
Sbjct: 350 TLRPEYKK 357
>sp|O46504|PDPR_BOVIN Pyruvate dehydrogenase phosphatase regulatory subunit,
mitochondrial OS=Bos taurus GN=PDPR PE=1 SV=1
Length = 878
Score = 34.7 bits (78), Expect = 0.61, Method: Composition-based stats.
Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 7/101 (6%)
Query: 137 VIDNDNGSHMRPMPGMMISTGFTEKKKP---QPKGS-EVKRTRRDRGEMEDIMFKLFERQ 192
V+D D ++R G ++S GF + KP + K E++ + D E ++ L R
Sbjct: 283 VVDADGRIYIRNWQGGILSGGFEKNPKPIFTEGKNQLEIQNLQEDWDHFEPLLSSLLRRM 342
Query: 193 SNWTLRQLIQETDQPEQFLKDMLKDLCVYNNKGSNQGSYEL 233
++++ + PE F DM C+ S +G + L
Sbjct: 343 PQLETLEIVKLVNCPETFTPDM---RCIMGESPSVRGYFVL 380
>sp|Q7TSQ8|PDPR_MOUSE Pyruvate dehydrogenase phosphatase regulatory subunit,
mitochondrial OS=Mus musculus GN=Pdpr PE=2 SV=1
Length = 878
Score = 34.7 bits (78), Expect = 0.71, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 7/107 (6%)
Query: 131 KSRQIQVIDNDNGSHMRPMPGMMISTGFTEKKKP---QPKGS-EVKRTRRDRGEMEDIMF 186
+S ++D D ++R G ++S GF + KP + K E++ R D E ++
Sbjct: 277 QSNTPTIVDADGRIYIRNWQGGILSGGFEKNPKPIFTEGKNQLEIQNLREDWDHFEPLLS 336
Query: 187 KLFERQSNWTLRQLIQETDQPEQFLKDMLKDLCVYNNKGSNQGSYEL 233
L R ++++ + PE F DM C+ QG + L
Sbjct: 337 SLLRRMPALETLEILKLVNCPETFTPDM---KCIMGESPVVQGYFVL 380
>sp|Q09813|T111_SCHPO Putative transcription initiation factor TFIID 111 kDa subunit
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC2G11.14 PE=1 SV=1
Length = 979
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 164 PQPKGSEVKRTRRDRGEMEDIMFKLFERQSNWTL--RQLIQE-TDQPEQFLKDMLKDLCV 220
P P +V ++R +M ++F+L R N L RQL + +DQ E ++ LK+
Sbjct: 587 PGPHSRKVTTASKNRLKM--LVFRLIRRSPNGGLFIRQLSKHFSDQNEMQIRQRLKEFME 644
Query: 221 YNNKGSNQGSYELK 234
Y KG G ++LK
Sbjct: 645 YKKKGDGPGYWKLK 658
>sp|Q8NCN5|PDPR_HUMAN Pyruvate dehydrogenase phosphatase regulatory subunit,
mitochondrial OS=Homo sapiens GN=PDPR PE=1 SV=2
Length = 879
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 43/101 (42%), Gaps = 7/101 (6%)
Query: 137 VIDNDNGSHMRPMPGMMISTGFTEKKKP----QPKGSEVKRTRRDRGEMEDIMFKLFERQ 192
++D D ++R G ++S GF + KP E++ + D E ++ L R
Sbjct: 284 IVDADGRIYIRNWQGGILSGGFEKNPKPIFTEGKNQLEIQNLQEDWDHFEPLLSSLLRRM 343
Query: 193 SNWTLRQLIQETDQPEQFLKDMLKDLCVYNNKGSNQGSYEL 233
++++ + PE F DM C+ + QG + L
Sbjct: 344 PELETLEIMKLVNCPETFTPDM---RCIMGESPAVQGYFVL 381
>sp|Q6AD57|SUCC_LEIXX Succinyl-CoA ligase [ADP-forming] subunit beta OS=Leifsonia xyli
subsp. xyli (strain CTCB07) GN=sucC PE=3 SV=1
Length = 387
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/134 (20%), Positives = 59/134 (44%), Gaps = 12/134 (8%)
Query: 28 RPVAKVILSIDPLQSNEDSSSSSSSSSTRFTMELISTESGNAPKRYSMDMSKD--LIPMS 85
+P A + +DP+ + + ++ + + F EL+S + K Y + +D L+ ++
Sbjct: 132 KPEALARIGVDPIAGVDTTKATEIARAAGFPEELVSKVADVFVKLYDVYKGEDATLVEVN 191
Query: 86 VFAESSNGK-ISVEGKI---KNKFDMRPHHENMENYGKL------CRERTNKYMTKSRQI 135
+ G+ I+++GK+ +N P HE +E+ +E Y+ Q+
Sbjct: 192 PLVLTEEGEVIALDGKVTLDENAGFRHPEHEELEDKAAADPLEAKAKEADLNYVKLDGQV 251
Query: 136 QVIDNDNGSHMRPM 149
+I N G M +
Sbjct: 252 GIIGNGAGLVMSTL 265
>sp|Q5SXI5|ZN496_MOUSE Zinc finger protein 496 OS=Mus musculus GN=Znf496 PE=1 SV=1
Length = 585
Score = 32.3 bits (72), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 46/104 (44%), Gaps = 11/104 (10%)
Query: 28 RPVAKVILSIDPLQSNEDSSSSSSSSSTRFTMELISTESGNAPKRYSMDMSKDLIP---- 83
+P +V+LS P + D + SS T+E++ + SG+ ++S +++L
Sbjct: 322 QPCPQVVLSQSPCPAGGDPPALKSSLDQEVTIEIVLSSSGDEDSQHSPYCTEELRSPPED 381
Query: 84 -MSVFAESSNGKISVEGKIKNKFDMRPHHENMENYGKLCRERTN 126
SV A SN E + K + P N GK+ R R N
Sbjct: 382 LHSVPAHQSNASAEGEVQTSQKSYVCP------NCGKIFRWRVN 419
>sp|Q9I7U4|TITIN_DROME Titin OS=Drosophila melanogaster GN=sls PE=1 SV=3
Length = 18141
Score = 31.2 bits (69), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 57/123 (46%), Gaps = 4/123 (3%)
Query: 34 ILSIDPLQSNEDSSSSSSSSSTRFTMELISTESGNAPKRYSMDMSKDLIPMSVFAESSNG 93
I ++ PL++ S + +T F ++I ES K + + K ES+
Sbjct: 8946 IPTVSPLEARAKPSLNLLQGTTTF--DVIPLESSVLLKDTHVAVQKAQQEYVAQVESNKV 9003
Query: 94 KISVEGKIKNKFDMRPHHENMENYGKLCRERTNKYMTKSRQIQVIDNDNGSHMRPMPGMM 153
+ ++ + +K D+ + E +EN+ K E T + T ++ IDN G H+ P P +
Sbjct: 9004 HVQMDNLVMHKEDIFENAE-IENFCKPITEGT-QLETVVIEVVPIDNVGGIHLAPQPSTL 9061
Query: 154 IST 156
++T
Sbjct: 9062 LAT 9064
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.127 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,368,309
Number of Sequences: 539616
Number of extensions: 3646200
Number of successful extensions: 13376
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 60
Number of HSP's that attempted gapping in prelim test: 12734
Number of HSP's gapped (non-prelim): 399
length of query: 246
length of database: 191,569,459
effective HSP length: 114
effective length of query: 132
effective length of database: 130,053,235
effective search space: 17167027020
effective search space used: 17167027020
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 60 (27.7 bits)