Query 025926
Match_columns 246
No_of_seqs 149 out of 198
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 20:46:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025926.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025926hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1bby_A RAP30; average structur 100.0 2.3E-38 7.7E-43 229.8 4.3 69 173-241 1-69 (69)
2 1f3u_A Transcription initiatio 99.9 3.7E-26 1.3E-30 182.3 9.4 90 1-110 17-118 (118)
3 2doa_A RNA polymerase II elong 69.9 1.2 4.1E-05 34.1 0.6 28 208-238 45-72 (104)
4 2e5n_A RNA polymerase II elong 69.2 1.4 4.6E-05 33.6 0.8 28 208-238 46-73 (100)
5 2heo_A Z-DNA binding protein 1 46.9 32 0.0011 23.2 4.7 52 181-233 11-65 (67)
6 1qbj_A Protein (double-strande 32.0 84 0.0029 22.2 5.1 58 180-237 10-73 (81)
7 1ylf_A RRF2 family protein; st 31.2 54 0.0018 25.3 4.3 54 181-236 17-74 (149)
8 3dpl_C Cullin-5; ubiquitin, NE 30.0 49 0.0017 30.0 4.4 61 179-239 198-276 (382)
9 1ldj_A Cullin homolog 1, CUL-1 29.9 38 0.0013 33.7 3.9 61 179-239 588-661 (760)
10 1xd7_A YWNA; structural genomi 28.1 56 0.0019 25.1 3.9 52 180-235 11-66 (145)
11 2htj_A P fimbrial regulatory p 27.9 1.1E+02 0.0039 20.6 5.2 54 183-236 3-62 (81)
12 3lmm_A Uncharacterized protein 27.7 61 0.0021 31.3 4.8 55 183-240 433-495 (583)
13 2jtd_A Myomesin-1, skelemin; i 26.8 2.4E+02 0.0081 22.3 7.4 81 30-123 52-139 (142)
14 2y75_A HTH-type transcriptiona 24.9 1E+02 0.0035 22.8 4.8 44 192-236 24-71 (129)
15 2hye_C Cullin-4A, CUL-4A; beta 23.7 43 0.0015 33.3 3.0 61 179-239 592-662 (759)
16 1qgp_A Protein (double strande 23.6 1.2E+02 0.0042 20.9 4.6 53 183-235 17-75 (77)
17 1au1_A Interferon-beta; helica 21.8 80 0.0027 25.6 3.8 44 179-222 60-109 (166)
No 1
>1bby_A RAP30; average structure transcription regulation, DNA- binding domain, transcription; NMR {Homo sapiens} SCOP: a.4.5.15 PDB: 2bby_A
Probab=100.00 E-value=2.3e-38 Score=229.81 Aligned_cols=69 Identities=38% Similarity=0.727 Sum_probs=67.3
Q ss_pred cccCChhhHHHHHHHHhhhccCcchHHHHHhhCCcHHHHHHHHHHHhhHhccCCCCcccccchhhhhcc
Q 025926 173 RTRRDRGEMEDIMFKLFERQSNWTLRQLIQETDQPEQFLKDMLKDLCVYNNKGSNQGSYELKPEYKKAA 241 (246)
Q Consensus 173 ~~R~~~~eLld~LF~~Fek~~yWslK~L~~~t~QPe~yLKeiL~eIa~lnk~Gp~~~~weLKpEYk~~~ 241 (246)
++|||+++|+|+||+|||+|+||+||+|+++|+||++||||||++||+||++|||+|+|+||||||++.
T Consensus 1 r~R~~~~~l~d~lF~~Fek~~yw~lK~L~~~t~QP~~yLKeiL~~Ia~~~k~g~~~~~weLKpEyr~y~ 69 (69)
T 1bby_A 1 RARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIGVQNVKGIHKNTWELKPEYRHYQ 69 (69)
T ss_dssp CTHHHHHHHHHHHHHHHHHCSCBCHHHHHHHCCSCHHHHHHHHHHHCCCBCCTTCCCBBCCCCSSCCCC
T ss_pred CCcCCHHHHHHHHHHHHhhcCCCcHHHHHHHHcCcHHHHHHHHHHHHHHHcCCCCCCeeeCcHHHhccC
Confidence 689999999999999999999999999999999999999999999999999999999999999999863
No 2
>1f3u_A Transcription initiation factor IIF, beta subunit; general transcription initiation and elongation factor, RNA polymerase II; 1.70A {Homo sapiens} SCOP: b.65.1.1
Probab=99.93 E-value=3.7e-26 Score=182.27 Aligned_cols=90 Identities=27% Similarity=0.430 Sum_probs=75.0
Q ss_pred CeeeeccHHHHHhhCCCCCCCCCCCCCCceeEEEEEeCCCCCCCCCCCCCCCCCcceeEEeccc-----------CCCCC
Q 025926 1 MWLMKCPALVSRSLKIPSSDNDDDDSARPVAKVILSIDPLQSNEDSSSSSSSSSTRFTMELIST-----------ESGNA 69 (246)
Q Consensus 1 vWLvKvPk~l~e~W~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~m~l~~~-----------~~~~i 69 (246)
|||||||+|||++|+++.+ .+++|+|+++.++ + ..++.|.|+.. ++.++
T Consensus 17 VWLvKvPk~L~e~W~~~~~-------~~~vGkvri~~~~-----------g--~~~v~l~L~~~~~~~~~~~~~~~~~~i 76 (118)
T 1f3u_A 17 VWLVKVPKYLSQQWAKASG-------RGEVGKLRIAKTQ-----------G--RTEVSFTLNEDLANIHDIGGKPASVSA 76 (118)
T ss_dssp EEEEEEEHHHHHHHTTCCT-------TCEEEEEEEEEET-----------T--EEEEEEEECHHHHTCCCTTCCCSTTCS
T ss_pred EEEEECCHHHHHHHHhCCC-------CCceEEEEEecCC-----------C--ceeEEEEeChhHhhhccccccccccCC
Confidence 7999999999999985322 3689999999764 2 13566666522 36889
Q ss_pred Cceeeecccc-CCcceeeeeeecCCceeEEEEEeeeeeEeec
Q 025926 70 PKRYSMDMSK-DLIPMSVFAESSNGKISVEGKIKNKFDMRPH 110 (246)
Q Consensus 70 PkeY~L~~~~-~~~~~~VFse~~~~~~~i~G~V~~~~~~~P~ 110 (246)
|++|+|+|++ ..+|||||||+++++++|||+|.|+|+|+|.
T Consensus 77 PkeY~l~~~~~~~~~~~VFSE~~~~~~a~EG~V~~k~d~rP~ 118 (118)
T 1f3u_A 77 PREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPA 118 (118)
T ss_dssp CCEEEEEEECCTTSEEEEEEEETTCCEEEEEEEEEEEEECCC
T ss_pred ChhceEEeeccCCceeEEEeccCCCcEEEEEEEEEEEEeecC
Confidence 9999999999 5679999999999999999999999999994
No 3
>2doa_A RNA polymerase II elongation factor ELL; C19ORF17, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.81
Probab=69.91 E-value=1.2 Score=34.14 Aligned_cols=28 Identities=18% Similarity=0.292 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhhHhccCCCCcccccchhhh
Q 025926 208 EQFLKDMLKDLCVYNNKGSNQGSYELKPEYK 238 (246)
Q Consensus 208 e~yLKeiL~eIa~lnk~Gp~~~~weLKpEYk 238 (246)
..-|..||.+||.+|.+. |.|+||+++=
T Consensus 45 ~~~l~~iL~eVA~~~~~~---~~y~Lk~~~y 72 (104)
T 2doa_A 45 KDALDGLLQQVANMSAKD---GTCTLQDCMY 72 (104)
T ss_dssp HHHHHHHHHHSSEECSSS---CEEECCSSGG
T ss_pred HHHHHHHHHHHHhcCCcC---CeeeehHHHH
Confidence 457899999999999765 8999999753
No 4
>2e5n_A RNA polymerase II elongation factor ELL2; ELL_N2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.16 E-value=1.4 Score=33.60 Aligned_cols=28 Identities=29% Similarity=0.282 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhhHhccCCCCcccccchhhh
Q 025926 208 EQFLKDMLKDLCVYNNKGSNQGSYELKPEYK 238 (246)
Q Consensus 208 e~yLKeiL~eIa~lnk~Gp~~~~weLKpEYk 238 (246)
..-|..||.+||.+|.+. |.|+||+++=
T Consensus 46 ~~~l~~iL~eVa~~~~~~---~~y~Lk~~~~ 73 (100)
T 2e5n_A 46 KNSLGAILQQVANLNSKD---LSYTLKDYVF 73 (100)
T ss_dssp HHHHHHHHHHHEEEETTT---TEEEECSTHH
T ss_pred HHHHHHHHHHHHhcCCcC---CeeehhHHHH
Confidence 456889999999999765 8999999853
No 5
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=46.91 E-value=32 Score=23.17 Aligned_cols=52 Identities=13% Similarity=0.277 Sum_probs=34.9
Q ss_pred HHHHHHHHhhhc-cCcchHHHHHhhCCcHHHHHHHHHHHhh--HhccCCCCccccc
Q 025926 181 MEDIMFKLFERQ-SNWTLRQLIQETDQPEQFLKDMLKDLCV--YNNKGSNQGSYEL 233 (246)
Q Consensus 181 Lld~LF~~Fek~-~yWslK~L~~~t~QPe~yLKeiL~eIa~--lnk~Gp~~~~weL 233 (246)
....|..+|.+. ..++..+|.+.++=|.+.+-.+|..... |..+ +.++.|.|
T Consensus 11 ~~~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~~-~~~G~y~l 65 (67)
T 2heo_A 11 LEQKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSS-PSPKYWSI 65 (67)
T ss_dssp HHHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEE-EETTEEEE
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEec-CCCceEee
Confidence 344566666655 5899999999999999888877766532 1222 23456654
No 6
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=32.01 E-value=84 Score=22.19 Aligned_cols=58 Identities=14% Similarity=0.214 Sum_probs=40.6
Q ss_pred hHHHHHHHHhhhcc---CcchHHHHHhhCCcHHHHHHHHHHH---hhHhccCCCCcccccchhh
Q 025926 180 EMEDIMFKLFERQS---NWTLRQLIQETDQPEQFLKDMLKDL---CVYNNKGSNQGSYELKPEY 237 (246)
Q Consensus 180 eLld~LF~~Fek~~---yWslK~L~~~t~QPe~yLKeiL~eI---a~lnk~Gp~~~~weLKpEY 237 (246)
++...|..++.+.. .=+.++|...++=+..=++..|... +.+.+.|...+.|.+.|-.
T Consensus 10 ~~~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~g~~~~~W~i~~~~ 73 (81)
T 1qbj_A 10 DQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTPPLWKIAVST 73 (81)
T ss_dssp HHHHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEESSSSCEEEEC---
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCCCeeEEeCcH
Confidence 34455667777888 9999999999998887677665554 3444456677999998743
No 7
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=31.15 E-value=54 Score=25.35 Aligned_cols=54 Identities=13% Similarity=0.115 Sum_probs=36.7
Q ss_pred HHHHHHHHhhhccCcchHHHHHhhCCcHHHHHHHHHHHhhH----hccCCCCcccccchh
Q 025926 181 MEDIMFKLFERQSNWTLRQLIQETDQPEQFLKDMLKDLCVY----NNKGSNQGSYELKPE 236 (246)
Q Consensus 181 Lld~LF~~Fek~~yWslK~L~~~t~QPe~yLKeiL~eIa~l----nk~Gp~~~~weLKpE 236 (246)
|.-+++=+-.....+++++|.+.++=|..||..+|.....- ..+| .|-|.|...
T Consensus 17 l~~L~~La~~~~~~~~~~~iA~~~~i~~~~l~kil~~L~~~Glv~s~rG--~GGy~L~~~ 74 (149)
T 1ylf_A 17 VHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRG--PGGAGLLKD 74 (149)
T ss_dssp HHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC-----CCEEESSC
T ss_pred HHHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEccC--CCceEeCCC
Confidence 44444433323457999999999999999999999887643 3456 677887543
No 8
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C
Probab=29.98 E-value=49 Score=30.02 Aligned_cols=61 Identities=11% Similarity=0.177 Sum_probs=46.1
Q ss_pred hhHHHHHHHHhhhc--cCcchHHHHHhhCCcHHHHHHHHHHHhh--------HhccCCC--------Ccccccchhhhh
Q 025926 179 GEMEDIMFKLFERQ--SNWTLRQLIQETDQPEQFLKDMLKDLCV--------YNNKGSN--------QGSYELKPEYKK 239 (246)
Q Consensus 179 ~eLld~LF~~Fek~--~yWslK~L~~~t~QPe~yLKeiL~eIa~--------lnk~Gp~--------~~~weLKpEYk~ 239 (246)
.-+-..|.-+|... .-|++.+|.+.|+=|+.-|+.+|..++. |.+.+.- -..+.|...|.+
T Consensus 198 s~~Qa~ILllFn~~~~~~lt~~ei~~~t~i~~~~L~r~L~sL~~~~k~k~~iL~~~~~~~~~~~~~~~d~f~~N~~F~~ 276 (382)
T 3dpl_C 198 TTFQLAVLFAWNQRPREKISFENLKLATELPDAELRRTLWSLVAFPKLKRQVLLYEPQVNSPKDFTEGTLFSVNQEFSL 276 (382)
T ss_dssp EHHHHHHHGGGTTCTTCCEEHHHHHHHHCCCHHHHHHHHHHHHCCTTCSSCSEEESSCCSSGGGCCTTCEEEECTTCCE
T ss_pred cHHHHHHHHHhccCCCCcCcHHHHHHHHCcCHHHHHHHHHHHhcccchhcceeeecCCccccCcCCCCCEEEEcCCCcC
Confidence 34556777899874 7899999999999999999999999863 4443321 246777777754
No 9
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A
Probab=29.86 E-value=38 Score=33.71 Aligned_cols=61 Identities=16% Similarity=0.234 Sum_probs=46.1
Q ss_pred hhHHHHHHHHhhhccCcchHHHHHhhCCcHHHHHHHHHHHh---hHhccCC----------CCcccccchhhhh
Q 025926 179 GEMEDIMFKLFERQSNWTLRQLIQETDQPEQFLKDMLKDLC---VYNNKGS----------NQGSYELKPEYKK 239 (246)
Q Consensus 179 ~eLld~LF~~Fek~~yWslK~L~~~t~QPe~yLKeiL~eIa---~lnk~Gp----------~~~~weLKpEYk~ 239 (246)
.-+-..|.-+|.+..-|++.+|.+.|+=|+..|+..|.-++ +|.+.+| -...+.|..+|.+
T Consensus 588 s~~Qa~iLllFn~~~~~t~~ei~~~t~i~~~~l~r~L~~l~k~~iL~~~~~~~~~~~~~~~~~~~f~lN~~F~~ 661 (760)
T 1ldj_A 588 STFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQILLKSKLLVLEDENANVDEVELKPDTLIKLYLGYKN 661 (760)
T ss_dssp CHHHHHHHHGGGSSSEEEHHHHHHHTCCCHHHHHHHHHHHHHTTTEECSCTTCCTTTCCCCTTCEEEECSSCCC
T ss_pred cHHHHHHHHHhcCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcceeCCCccccccCCCCCCCEEEeeccccC
Confidence 44556677899999999999999999999999999998776 4443432 1346777776654
No 10
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=28.13 E-value=56 Score=25.13 Aligned_cols=52 Identities=10% Similarity=0.133 Sum_probs=36.3
Q ss_pred hHHHHHHHHhhhccCcchHHHHHhhCCcHHHHHHHHHHHhhH----hccCCCCcccccch
Q 025926 180 EMEDIMFKLFERQSNWTLRQLIQETDQPEQFLKDMLKDLCVY----NNKGSNQGSYELKP 235 (246)
Q Consensus 180 eLld~LF~~Fek~~yWslK~L~~~t~QPe~yLKeiL~eIa~l----nk~Gp~~~~weLKp 235 (246)
.|.-+++=+-.... ++++|.+.++=|..||..||.....- ..+| .|-|.|..
T Consensus 11 Al~~L~~La~~~~~--s~~~IA~~~~i~~~~l~kIl~~L~~aGlv~s~rG--~GGy~Lar 66 (145)
T 1xd7_A 11 AIHILSLISMDEKT--SSEIIADSVNTNPVVVRRMISLLKKADILTSRAG--VPGASLKK 66 (145)
T ss_dssp HHHHHHHHHTCSCC--CHHHHHHHHTSCHHHHHHHHHHHHHTTSEECCSS--SSSCEESS
T ss_pred HHHHHHHHHhCCCC--CHHHHHHHHCcCHHHHHHHHHHHHHCCceEeecC--CCCceecC
Confidence 34444444422223 99999999999999999999887633 3556 67777753
No 11
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=27.93 E-value=1.1e+02 Score=20.63 Aligned_cols=54 Identities=11% Similarity=0.068 Sum_probs=35.9
Q ss_pred HHHHHHhhhccCcchHHHHHhhCCcHHHHHHHHHHHhh---Hh---ccCCCCcccccchh
Q 025926 183 DIMFKLFERQSNWTLRQLIQETDQPEQFLKDMLKDLCV---YN---NKGSNQGSYELKPE 236 (246)
Q Consensus 183 d~LF~~Fek~~yWslK~L~~~t~QPe~yLKeiL~eIa~---ln---k~Gp~~~~weLKpE 236 (246)
..|+.++.+..-.+..+|.+.++=+..-+...|+.... +. .++.-...|.+.++
T Consensus 3 ~~Il~~L~~~~~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~~~~~~~gr~~~y~l~~~ 62 (81)
T 2htj_A 3 NEILEFLNRHNGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQRSPLRRGMATYWFLKGE 62 (81)
T ss_dssp HHHHHHHHHSCCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEECCSSSSSCEEEESSC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeccCCCCcEEEEEChh
Confidence 34555555666789999999999988877777766544 22 12223456777654
No 12
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=27.69 E-value=61 Score=31.27 Aligned_cols=55 Identities=11% Similarity=0.131 Sum_probs=45.7
Q ss_pred HHHHHHhhhccCcchHHHHHhhCCcHHHHHHHHHHHhh--------HhccCCCCcccccchhhhhc
Q 025926 183 DIMFKLFERQSNWTLRQLIQETDQPEQFLKDMLKDLCV--------YNNKGSNQGSYELKPEYKKA 240 (246)
Q Consensus 183 d~LF~~Fek~~yWslK~L~~~t~QPe~yLKeiL~eIa~--------lnk~Gp~~~~weLKpEYk~~ 240 (246)
-+|..+..++++.+.++|++.++-.+.-.+.+|+.... +.+.| ++|.|.+++...
T Consensus 433 ~~iL~~l~~~~~it~~~la~~l~~s~~~~~~~L~~L~~~~~~~~glie~~g---~~y~L~~~~~~~ 495 (583)
T 3lmm_A 433 AIVLYLLFQRPFITIDVVARGLQSGKEAARNALEAARQTTVAGAPLIIAHD---GVWLLGNACREI 495 (583)
T ss_dssp HHHHHHHHHSSSBCHHHHHHHHTSCHHHHHHHHHHHHTCEETTEESEEEET---TEEEECHHHHHH
T ss_pred HHHHHHHHHCCCcCHHHHHHHhCcCHHHHHHHHHHHHhhhccccceEEEeC---CEEEECHHHHHH
Confidence 36777778999999999999999999988888888754 56667 689999987643
No 13
>2jtd_A Myomesin-1, skelemin; immunoglobulin domain, muscle protein, thick filament, immune system, cell adhesion; NMR {Mus musculus}
Probab=26.81 E-value=2.4e+02 Score=22.33 Aligned_cols=81 Identities=20% Similarity=0.311 Sum_probs=45.7
Q ss_pred eeEEEEEeCCCCCCCCCCCCCCCCCcceeEEecccCCCCCCceeeeccccC--Cccee--eeeeecCCcee---EEEEEe
Q 025926 30 VAKVILSIDPLQSNEDSSSSSSSSSTRFTMELISTESGNAPKRYSMDMSKD--LIPMS--VFAESSNGKIS---VEGKIK 102 (246)
Q Consensus 30 ~g~v~~~~~~~~~~~~~~~~~~~~~~~~~m~l~~~~~~~iPkeY~L~~~~~--~~~~~--VFse~~~~~~~---i~G~V~ 102 (246)
.|+||+|+.--. -.+...+.+-.|..+..+-| .|.+.+... .+.|. -|++.+.|.-. .-|+..
T Consensus 52 kG~VRfWlQaek---------lS~~a~~~~ifNdkei~~~~-~~ki~fD~~tGiIEmime~~~~edeGTyT~QlqDGKAk 121 (142)
T 2jtd_A 52 KGQVRFWMQAEK---------LSSNAKVSYIFNEKEIFEGP-KYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQIQDGKAT 121 (142)
T ss_dssp TTEEEEEEECSC---------CTTCCEEEEEETTEECCSSS-SCCEEECSSSCCEEEEECCCCTTTCCEEEEEEEETTEE
T ss_pred cCcEEEEEEhhh---------cCCCceEEEEeccceeccCC-CeeEeecccCChhhhhHhhcccccCceEEEEEecCccc
Confidence 699999985411 12223667766655422222 344443322 23333 36666665221 257777
Q ss_pred eeeeEeecCCChHHHHHHHHH
Q 025926 103 NKFDMRPHHENMENYGKLCRE 123 (246)
Q Consensus 103 ~~~~~~P~~~~~~~Y~~l~~~ 123 (246)
+...+.=+ ++.|.+++++
T Consensus 122 nQssLVLi---gD~Fk~l~ke 139 (142)
T 2jtd_A 122 GHSTLVLI---GDVYKKLQKE 139 (142)
T ss_dssp EEEEEECC---HHHHHHHHHH
T ss_pred ceeEEEEe---hHHHHHHHHh
Confidence 77777766 5888888765
No 14
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=24.92 E-value=1e+02 Score=22.80 Aligned_cols=44 Identities=23% Similarity=0.423 Sum_probs=31.5
Q ss_pred ccCcchHHHHHhhCCcHHHHHHHHHHHhhHh----ccCCCCcccccchh
Q 025926 192 QSNWTLRQLIQETDQPEQFLKDMLKDLCVYN----NKGSNQGSYELKPE 236 (246)
Q Consensus 192 ~~yWslK~L~~~t~QPe~yLKeiL~eIa~ln----k~Gp~~~~weLKpE 236 (246)
...++.++|.+.++=|..|+.++|....... .+|+ .|-|.|...
T Consensus 24 ~~~~s~~ela~~~~i~~~~v~~il~~L~~~Glv~~~~g~-~ggy~L~~~ 71 (129)
T 2y75_A 24 EGPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSIRGA-YGGYVLGSE 71 (129)
T ss_dssp SCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEC-----CCEEESSC
T ss_pred CCcCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEecCCC-CCceEeCCC
Confidence 3579999999999999999999998875432 3353 356777543
No 15
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E*
Probab=23.75 E-value=43 Score=33.30 Aligned_cols=61 Identities=13% Similarity=0.319 Sum_probs=46.4
Q ss_pred hhHHHHHHHHhhhccCcchHHHHHhhCCcHHHHHHHHHHHh-----hHhccCC-----CCcccccchhhhh
Q 025926 179 GEMEDIMFKLFERQSNWTLRQLIQETDQPEQFLKDMLKDLC-----VYNNKGS-----NQGSYELKPEYKK 239 (246)
Q Consensus 179 ~eLld~LF~~Fek~~yWslK~L~~~t~QPe~yLKeiL~eIa-----~lnk~Gp-----~~~~weLKpEYk~ 239 (246)
.-+-..|.-+|....-|++.+|.+.|+=|+.-|+.+|.-++ +|.+.+. -...+.|..+|.+
T Consensus 592 s~~Qa~iLllFn~~~~lt~~ei~~~t~i~~~~l~r~L~sL~~~k~~vL~~~p~~~~v~~~d~f~lN~~f~~ 662 (759)
T 2hye_C 592 SLFQTLVLLMFNEGDGFSFEEIKMATGIEDSELRRTLQSLACGKARVLIKSPKGKEVEDGDKFIFNGEFKH 662 (759)
T ss_dssp EHHHHHHHHHTTSCCCEEHHHHHHHTCCCHHHHHHHHHTTTTTTTCSEEETTCSSSCCSSCEEEECCCCCC
T ss_pred cHHHHHHHHHhcCCCCcCHHHHHHHHCcCHHHHHHHHHHHHccCCceeecCCCCCCCCCCCEEEeeccccC
Confidence 34456677899999999999999999999999999998876 4544210 1356777777764
No 16
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=23.59 E-value=1.2e+02 Score=20.86 Aligned_cols=53 Identities=13% Similarity=0.211 Sum_probs=38.6
Q ss_pred HHHHHHhhhcc---CcchHHHHHhhCCcHHHHHHHHHHH---hhHhccCCCCcccccch
Q 025926 183 DIMFKLFERQS---NWTLRQLIQETDQPEQFLKDMLKDL---CVYNNKGSNQGSYELKP 235 (246)
Q Consensus 183 d~LF~~Fek~~---yWslK~L~~~t~QPe~yLKeiL~eI---a~lnk~Gp~~~~weLKp 235 (246)
..|..+..+.. .=+.++|...++=+..=+...|... +...+.|...+.|.+.|
T Consensus 17 ~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~g~~~~~W~i~~ 75 (77)
T 1qgp_A 17 QRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTPPLWKIAV 75 (77)
T ss_dssp HHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEECSSSCEEEECC
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCCCceEecC
Confidence 45556666666 8899999999998887666665544 34445577779999876
No 17
>1au1_A Interferon-beta; helical cytokine, immune system, cytokine; HET: BGC G6D; 2.20A {Homo sapiens} SCOP: a.26.1.3
Probab=21.79 E-value=80 Score=25.58 Aligned_cols=44 Identities=23% Similarity=0.416 Sum_probs=33.8
Q ss_pred hhHHHHHHHHhhhcc---Ccc---hHHHHHhhCCcHHHHHHHHHHHhhHh
Q 025926 179 GEMEDIMFKLFERQS---NWT---LRQLIQETDQPEQFLKDMLKDLCVYN 222 (246)
Q Consensus 179 ~eLld~LF~~Fek~~---yWs---lK~L~~~t~QPe~yLKeiL~eIa~ln 222 (246)
-|++..||.+|.... -|+ +..|...+.|=..+|+.+|.+.+.-.
T Consensus 60 ~emlqqif~LF~~~~ssa~W~~t~le~fl~~L~qQl~~Le~C~~~~~~~~ 109 (166)
T 1au1_A 60 YEMLQNIFAIFRQDSSSTGWNETIVENLLANVYHQINHLKTVLEEKLEKE 109 (166)
T ss_dssp HHHHHHHHHHHTSCCGGGTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhcCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 678899999998665 498 55566667788889999998766443
Done!