Query 025927
Match_columns 246
No_of_seqs 116 out of 1146
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 11:08:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025927.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025927hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0036 Rpe Pentose-5-phosphat 100.0 3E-74 6.5E-79 506.2 20.2 187 56-245 2-188 (220)
2 PRK08745 ribulose-phosphate 3- 100.0 5.3E-71 1.2E-75 488.6 20.6 188 56-245 2-190 (223)
3 PRK09722 allulose-6-phosphate 100.0 2E-70 4.3E-75 486.7 20.3 187 57-245 2-188 (229)
4 PRK08091 ribulose-phosphate 3- 100.0 1.3E-69 2.9E-74 481.0 20.7 185 57-245 12-198 (228)
5 PF00834 Ribul_P_3_epim: Ribul 100.0 6E-70 1.3E-74 475.0 17.9 185 59-245 1-185 (201)
6 PRK08005 epimerase; Validated 100.0 1.4E-69 2.9E-74 475.9 18.9 182 58-245 1-182 (210)
7 PRK14057 epimerase; Provisiona 100.0 1.2E-68 2.5E-73 481.0 20.5 185 57-245 19-212 (254)
8 PRK08883 ribulose-phosphate 3- 100.0 2.2E-68 4.7E-73 470.6 18.7 185 59-245 1-186 (220)
9 KOG3111 D-ribulose-5-phosphate 100.0 1.5E-67 3.3E-72 454.6 17.1 185 55-245 2-188 (224)
10 PTZ00170 D-ribulose-5-phosphat 100.0 1.1E-56 2.4E-61 397.1 15.7 183 57-245 6-192 (228)
11 PLN02334 ribulose-phosphate 3- 100.0 3.7E-46 8E-51 328.4 19.4 191 51-245 1-193 (229)
12 TIGR01163 rpe ribulose-phospha 100.0 1.4E-37 3.1E-42 266.3 19.4 184 60-245 1-184 (210)
13 PRK05581 ribulose-phosphate 3- 100.0 1.9E-36 4.1E-41 261.8 20.6 187 57-245 3-189 (220)
14 cd00429 RPE Ribulose-5-phospha 100.0 2.8E-33 6.1E-38 239.1 20.1 185 59-245 1-185 (211)
15 cd04724 Tryptophan_synthase_al 100.0 5E-31 1.1E-35 234.9 13.2 173 64-245 6-207 (242)
16 PRK13125 trpA tryptophan synth 99.9 5.7E-24 1.2E-28 189.6 18.5 173 59-244 5-204 (244)
17 PRK13813 orotidine 5'-phosphat 99.9 7E-26 1.5E-30 196.8 2.3 172 65-245 8-183 (215)
18 PRK13306 ulaD 3-keto-L-gulonat 99.9 3.6E-23 7.8E-28 182.2 11.3 171 64-245 7-182 (216)
19 PRK13307 bifunctional formalde 99.9 6.7E-23 1.5E-27 194.7 13.6 166 64-245 176-349 (391)
20 TIGR03128 RuMP_HxlA 3-hexulose 99.9 7.5E-22 1.6E-26 169.8 13.1 167 65-245 4-177 (206)
21 TIGR00262 trpA tryptophan synt 99.9 3.6E-20 7.8E-25 167.0 18.8 181 56-245 8-218 (256)
22 cd04726 KGPDC_HPS 3-Keto-L-gul 99.8 1E-20 2.2E-25 161.7 12.0 166 65-245 5-177 (202)
23 cd00564 TMP_TenI Thiamine mono 99.8 7.8E-19 1.7E-23 147.0 10.0 166 58-245 2-169 (196)
24 PRK00043 thiE thiamine-phospha 99.7 1.4E-17 3.1E-22 142.7 10.6 168 57-245 9-179 (212)
25 PRK07028 bifunctional hexulose 99.7 1.9E-16 4E-21 151.4 11.5 166 64-245 7-181 (430)
26 PRK00230 orotidine 5'-phosphat 99.5 1.2E-14 2.6E-19 129.0 8.3 114 64-181 6-124 (230)
27 CHL00200 trpA tryptophan synth 99.5 2.1E-13 4.5E-18 123.9 14.2 180 56-245 13-222 (263)
28 cd04722 TIM_phosphate_binding 99.4 4.2E-11 9.2E-16 98.5 16.1 171 70-245 12-190 (200)
29 TIGR01740 pyrF orotidine 5'-ph 98.7 3.1E-08 6.7E-13 86.8 6.0 100 64-171 2-109 (213)
30 cd00331 IGPS Indole-3-glycerol 98.3 2.6E-05 5.6E-10 67.9 14.6 159 71-245 32-192 (217)
31 cd00405 PRAI Phosphoribosylant 98.1 7.5E-05 1.6E-09 64.5 12.9 154 74-245 10-171 (203)
32 cd04730 NPD_like 2-Nitropropan 97.9 0.00011 2.5E-09 64.1 10.7 126 106-244 44-175 (236)
33 PRK01130 N-acetylmannosamine-6 97.9 0.00039 8.4E-09 60.8 13.9 167 57-245 6-193 (221)
34 PRK13111 trpA tryptophan synth 97.9 0.00019 4E-09 65.4 12.3 180 56-245 10-220 (258)
35 PLN02591 tryptophan synthase 97.9 0.0003 6.6E-09 63.8 13.2 176 60-245 4-209 (250)
36 cd04732 HisA HisA. Phosphorib 97.8 0.00082 1.8E-08 58.7 14.9 164 66-244 28-209 (234)
37 TIGR00007 phosphoribosylformim 97.8 0.0016 3.4E-08 57.0 16.3 164 65-243 26-207 (230)
38 COG0269 SgbH 3-hexulose-6-phos 97.8 0.00045 9.8E-09 61.6 12.3 170 65-246 8-184 (217)
39 PRK01222 N-(5'-phosphoribosyl) 97.7 0.0016 3.5E-08 57.3 14.1 150 74-245 14-173 (210)
40 cd01568 QPRTase_NadC Quinolina 97.5 0.00025 5.4E-09 64.7 6.4 86 145-245 160-246 (269)
41 COG0135 TrpF Phosphoribosylant 97.4 0.0036 7.8E-08 55.6 12.6 151 74-245 13-173 (208)
42 PF00697 PRAI: N-(5'phosphorib 97.3 0.0014 3E-08 56.9 9.3 151 74-245 10-166 (197)
43 TIGR01919 hisA-trpF 1-(5-phosp 97.3 0.01 2.2E-07 53.4 14.1 157 74-243 35-211 (243)
44 cd04723 HisA_HisF Phosphoribos 97.2 0.019 4.2E-07 51.0 14.9 163 65-244 33-208 (233)
45 PRK13958 N-(5'-phosphoribosyl) 97.2 0.01 2.2E-07 52.2 12.9 150 74-244 12-170 (207)
46 cd04729 NanE N-acetylmannosami 97.2 0.011 2.4E-07 51.6 13.0 166 57-244 10-196 (219)
47 PRK00748 1-(5-phosphoribosyl)- 97.2 0.018 3.8E-07 50.3 14.3 162 71-244 31-209 (233)
48 PRK00278 trpC indole-3-glycero 97.1 0.016 3.4E-07 52.7 13.8 161 70-245 70-231 (260)
49 PF03932 CutC: CutC family; I 97.0 0.0099 2.1E-07 52.5 11.0 155 74-245 11-189 (201)
50 PRK13585 1-(5-phosphoribosyl)- 97.0 0.028 6E-07 49.5 13.7 161 72-244 34-212 (241)
51 cd00452 KDPG_aldolase KDPG and 96.9 0.026 5.6E-07 48.5 12.5 155 60-245 6-162 (190)
52 TIGR03151 enACPred_II putative 96.8 0.023 4.9E-07 52.8 12.8 118 106-239 53-174 (307)
53 cd04731 HisF The cyclase subun 96.8 0.072 1.6E-06 47.1 15.3 161 71-244 28-212 (243)
54 PRK07094 biotin synthase; Prov 96.8 0.026 5.7E-07 51.9 12.4 152 68-223 71-250 (323)
55 PF02581 TMP-TENI: Thiamine mo 96.8 0.016 3.4E-07 49.3 10.2 165 59-245 3-168 (180)
56 cd02810 DHOD_DHPD_FMN Dihydroo 96.6 0.057 1.2E-06 48.8 13.2 128 114-244 97-262 (289)
57 PRK06256 biotin synthase; Vali 96.6 0.076 1.6E-06 49.2 14.1 161 67-234 91-278 (336)
58 TIGR00735 hisF imidazoleglycer 96.4 0.19 4.2E-06 45.1 15.2 161 71-243 31-217 (254)
59 PRK07259 dihydroorotate dehydr 96.3 0.071 1.5E-06 48.7 12.1 164 57-226 91-290 (301)
60 cd04740 DHOD_1B_like Dihydroor 96.3 0.19 4.2E-06 45.6 14.9 163 56-225 88-286 (296)
61 cd02801 DUS_like_FMN Dihydrour 96.3 0.067 1.5E-06 46.4 11.3 139 53-193 50-212 (231)
62 PRK13587 1-(5-phosphoribosyl)- 96.3 0.2 4.3E-06 44.8 14.4 164 66-244 30-211 (234)
63 PRK11572 copper homeostasis pr 96.3 0.097 2.1E-06 47.8 12.5 151 74-244 12-188 (248)
64 PF00290 Trp_syntA: Tryptophan 96.2 0.21 4.5E-06 45.7 14.8 178 56-243 8-216 (259)
65 PRK07695 transcriptional regul 96.2 0.11 2.3E-06 44.8 12.2 162 57-245 4-168 (201)
66 PRK13803 bifunctional phosphor 96.2 0.11 2.5E-06 52.6 14.1 156 73-245 13-178 (610)
67 PRK11815 tRNA-dihydrouridine s 96.2 0.05 1.1E-06 51.0 10.8 141 56-199 63-241 (333)
68 cd04740 DHOD_1B_like Dihydroor 96.2 0.13 2.7E-06 46.9 13.2 126 114-244 88-250 (296)
69 TIGR00737 nifR3_yhdG putative 96.0 0.16 3.4E-06 47.1 13.1 136 57-193 62-221 (319)
70 PRK14024 phosphoribosyl isomer 96.0 0.29 6.3E-06 43.7 14.0 157 72-242 34-207 (241)
71 TIGR02026 BchE magnesium-proto 95.9 0.1 2.2E-06 51.4 11.9 141 64-209 219-387 (497)
72 TIGR03471 HpnJ hopanoid biosyn 95.9 0.034 7.4E-07 54.0 8.3 117 67-186 227-360 (472)
73 PRK14114 1-(5-phosphoribosyl)- 95.9 0.49 1.1E-05 42.7 15.2 163 65-244 28-207 (241)
74 TIGR02129 hisA_euk phosphoribo 95.8 0.29 6.3E-06 44.8 13.5 152 74-243 42-219 (253)
75 PRK09427 bifunctional indole-3 95.8 0.22 4.7E-06 49.1 13.3 146 74-244 268-419 (454)
76 PRK08649 inosine 5-monophospha 95.6 0.2 4.4E-06 47.9 12.4 108 127-238 143-268 (368)
77 PRK02083 imidazole glycerol ph 95.6 0.45 9.7E-06 42.5 13.7 164 65-243 28-215 (253)
78 TIGR00433 bioB biotin syntheta 95.6 0.65 1.4E-05 41.9 14.9 158 70-234 65-249 (296)
79 TIGR01304 IMP_DH_rel_2 IMP deh 95.5 0.64 1.4E-05 44.7 15.2 126 106-237 124-266 (369)
80 PLN02363 phosphoribosylanthran 95.5 0.4 8.7E-06 43.7 13.2 155 69-244 54-217 (256)
81 PLN02389 biotin synthase 95.5 0.33 7.1E-06 46.6 13.2 162 67-234 116-306 (379)
82 PRK09140 2-dehydro-3-deoxy-6-p 95.4 0.7 1.5E-05 40.6 14.1 158 59-245 11-170 (206)
83 TIGR00693 thiE thiamine-phosph 95.4 0.1 2.2E-06 44.3 8.5 163 59-245 4-171 (196)
84 PRK01033 imidazole glycerol ph 95.4 1.1 2.4E-05 40.4 15.5 162 71-244 31-215 (258)
85 TIGR03572 WbuZ glycosyl amidat 95.2 1.7 3.6E-05 38.1 16.0 160 71-242 31-214 (232)
86 COG0159 TrpA Tryptophan syntha 95.2 0.43 9.2E-06 44.0 12.3 179 56-243 15-223 (265)
87 PRK07565 dihydroorotate dehydr 95.1 0.39 8.4E-06 44.8 12.2 139 57-237 101-250 (334)
88 cd02810 DHOD_DHPD_FMN Dihydroo 95.0 0.13 2.7E-06 46.5 8.5 85 57-145 98-196 (289)
89 PF03437 BtpA: BtpA family; I 95.0 0.56 1.2E-05 42.9 12.6 162 71-245 30-219 (254)
90 cd03174 DRE_TIM_metallolyase D 94.9 0.77 1.7E-05 40.4 12.9 149 68-221 17-189 (265)
91 PRK07259 dihydroorotate dehydr 94.9 0.66 1.4E-05 42.4 12.8 134 106-244 79-253 (301)
92 TIGR00742 yjbN tRNA dihydrouri 94.8 0.65 1.4E-05 43.5 12.9 138 53-193 50-222 (318)
93 PF00977 His_biosynth: Histidi 94.8 0.11 2.5E-06 46.0 7.5 168 62-244 24-210 (229)
94 PRK10550 tRNA-dihydrouridine s 94.8 0.53 1.2E-05 43.9 12.2 139 56-198 61-231 (312)
95 COG0352 ThiE Thiamine monophos 94.8 0.39 8.4E-06 42.8 10.6 166 60-245 11-177 (211)
96 PRK05718 keto-hydroxyglutarate 94.7 0.7 1.5E-05 41.0 12.1 156 58-245 15-174 (212)
97 PRK08508 biotin synthase; Prov 94.6 1.8 3.8E-05 39.6 14.9 161 67-235 40-228 (279)
98 PLN02446 (5-phosphoribosyl)-5- 94.6 1.5 3.3E-05 40.4 14.3 154 72-243 45-225 (262)
99 COG0106 HisA Phosphoribosylfor 94.6 2.5 5.5E-05 38.5 15.5 153 73-237 34-202 (241)
100 cd02940 DHPD_FMN Dihydropyrimi 94.6 0.67 1.5E-05 42.6 12.1 147 57-237 99-263 (299)
101 PRK09240 thiH thiamine biosynt 94.5 0.64 1.4E-05 44.2 12.2 160 66-234 103-299 (371)
102 cd04738 DHOD_2_like Dihydrooro 94.5 0.79 1.7E-05 42.8 12.5 146 95-243 102-298 (327)
103 PRK13957 indole-3-glycerol-pho 94.4 0.23 4.9E-06 45.3 8.3 154 71-241 62-218 (247)
104 TIGR01579 MiaB-like-C MiaB-lik 94.4 1 2.3E-05 43.0 13.3 157 64-221 164-359 (414)
105 PRK00164 moaA molybdenum cofac 94.3 1.8 3.9E-05 39.9 14.4 115 67-186 49-181 (331)
106 PRK10415 tRNA-dihydrouridine s 94.3 0.72 1.6E-05 43.0 11.8 131 57-193 64-223 (321)
107 TIGR00259 thylakoid_BtpA membr 94.2 3.1 6.7E-05 38.2 15.4 163 71-245 29-219 (257)
108 PLN02428 lipoic acid synthase 94.2 0.42 9.1E-06 45.6 10.1 121 66-193 129-281 (349)
109 cd04739 DHOD_like Dihydroorota 94.1 1.1 2.4E-05 41.8 12.6 141 57-237 99-248 (325)
110 cd02801 DUS_like_FMN Dihydrour 93.9 0.72 1.6E-05 39.9 10.4 122 114-244 53-202 (231)
111 PF04055 Radical_SAM: Radical 93.9 0.69 1.5E-05 36.3 9.4 80 67-149 28-111 (166)
112 cd07944 DRE_TIM_HOA_like 4-hyd 93.9 4.9 0.00011 36.5 16.1 149 67-221 17-181 (266)
113 PRK06843 inosine 5-monophospha 93.8 0.75 1.6E-05 44.8 11.2 109 126-237 151-267 (404)
114 PRK13586 1-(5-phosphoribosyl)- 93.8 3.1 6.6E-05 37.3 14.3 158 68-243 31-207 (232)
115 cd00019 AP2Ec AP endonuclease 93.7 1.4 3E-05 39.3 12.1 134 66-200 7-179 (279)
116 PRK07455 keto-hydroxyglutarate 93.6 3.6 7.7E-05 35.5 14.0 157 59-245 13-171 (187)
117 TIGR01037 pyrD_sub1_fam dihydr 93.6 3 6.4E-05 38.0 14.2 180 56-244 12-253 (300)
118 TIGR03551 F420_cofH 7,8-dideme 93.5 0.59 1.3E-05 43.7 9.6 116 66-185 69-214 (343)
119 PRK12928 lipoyl synthase; Prov 93.4 0.8 1.7E-05 42.4 10.2 180 28-215 48-265 (290)
120 PF03740 PdxJ: Pyridoxal phosp 93.2 2 4.4E-05 39.1 12.3 160 74-246 26-205 (239)
121 TIGR01769 GGGP geranylgeranylg 93.2 0.33 7.1E-06 43.0 7.1 73 68-144 132-204 (205)
122 PRK08446 coproporphyrinogen II 93.0 5.2 0.00011 37.6 15.2 156 68-232 32-227 (350)
123 PRK05628 coproporphyrinogen II 92.9 3.5 7.7E-05 38.9 14.1 159 70-232 40-244 (375)
124 PRK09121 5-methyltetrahydropte 92.9 0.4 8.8E-06 45.2 7.7 140 71-219 157-330 (339)
125 PRK05904 coproporphyrinogen II 92.8 3.6 7.7E-05 39.0 13.8 101 126-226 97-229 (353)
126 cd00331 IGPS Indole-3-glycerol 92.8 1.4 3.1E-05 38.2 10.3 123 64-196 75-203 (217)
127 COG2108 Uncharacterized conser 92.6 0.59 1.3E-05 44.4 8.2 87 106-193 99-198 (353)
128 PRK14331 (dimethylallyl)adenos 92.6 6.4 0.00014 38.1 15.6 130 66-199 174-339 (437)
129 PRK06096 molybdenum transport 92.5 0.6 1.3E-05 43.4 8.1 78 153-245 175-255 (284)
130 PRK07107 inosine 5-monophospha 92.5 1.6 3.4E-05 43.6 11.5 158 70-238 180-364 (502)
131 cd00945 Aldolase_Class_I Class 92.5 2.4 5.1E-05 35.0 11.0 152 68-241 11-188 (201)
132 PRK08208 coproporphyrinogen II 92.4 8.6 0.00019 37.2 16.2 153 70-226 74-266 (430)
133 PRK13307 bifunctional formalde 92.3 3 6.4E-05 40.5 12.8 158 58-232 227-390 (391)
134 cd02809 alpha_hydroxyacid_oxid 92.3 2.4 5.3E-05 38.9 11.8 120 109-237 109-238 (299)
135 PRK15108 biotin synthase; Prov 92.3 5.1 0.00011 37.8 14.2 161 67-235 76-265 (345)
136 COG3142 CutC Uncharacterized p 92.3 2.2 4.9E-05 38.8 11.1 154 76-244 14-189 (241)
137 cd00381 IMPDH IMPDH: The catal 92.2 2.4 5.2E-05 39.8 11.7 111 128-241 96-213 (325)
138 PRK07535 methyltetrahydrofolat 92.2 3.3 7.2E-05 37.7 12.4 149 63-220 18-187 (261)
139 PRK08195 4-hyroxy-2-oxovalerat 92.2 8.7 0.00019 36.3 15.5 146 68-220 23-186 (337)
140 smart00729 Elp3 Elongator prot 92.0 1.2 2.5E-05 36.5 8.5 129 67-198 30-191 (216)
141 smart00518 AP2Ec AP endonuclea 92.0 3.9 8.4E-05 36.2 12.4 130 71-200 11-176 (273)
142 PRK14340 (dimethylallyl)adenos 92.0 0.79 1.7E-05 44.7 8.6 132 65-200 176-343 (445)
143 PRK05265 pyridoxine 5'-phospha 91.9 3.4 7.3E-05 37.7 11.9 159 74-245 28-203 (239)
144 PRK00278 trpC indole-3-glycero 91.9 2.2 4.7E-05 38.8 10.7 126 62-196 112-242 (260)
145 PRK06512 thiamine-phosphate py 91.7 2.7 5.9E-05 37.3 11.1 160 58-245 16-183 (221)
146 PRK07379 coproporphyrinogen II 91.7 7.2 0.00016 37.4 14.6 103 129-232 116-251 (400)
147 PRK09517 multifunctional thiam 91.6 0.83 1.8E-05 47.5 8.7 170 58-245 7-185 (755)
148 PRK04302 triosephosphate isome 91.5 5.4 0.00012 35.0 12.6 133 104-242 45-190 (223)
149 TIGR00559 pdxJ pyridoxine 5'-p 91.4 5.6 0.00012 36.2 12.7 161 74-245 25-201 (237)
150 smart00812 Alpha_L_fucos Alpha 91.3 1 2.2E-05 43.3 8.4 92 125-235 81-203 (384)
151 cd04730 NPD_like 2-Nitropropan 91.1 9.2 0.0002 33.1 13.7 118 70-200 67-191 (236)
152 PTZ00314 inosine-5'-monophosph 91.1 5.9 0.00013 39.4 13.8 163 70-238 178-356 (495)
153 TIGR00089 RNA modification enz 91.1 3 6.4E-05 40.1 11.4 155 65-220 166-359 (429)
154 PF01136 Peptidase_U32: Peptid 91.0 1.5 3.2E-05 38.3 8.5 95 70-181 2-100 (233)
155 TIGR01182 eda Entner-Doudoroff 90.9 3 6.4E-05 36.9 10.4 153 59-245 9-167 (204)
156 TIGR00510 lipA lipoate synthas 90.9 7.6 0.00016 36.3 13.5 163 22-186 44-229 (302)
157 TIGR01334 modD putative molybd 90.7 1.4 3.1E-05 40.7 8.5 78 153-245 174-254 (277)
158 PF01729 QRPTase_C: Quinolinat 90.7 0.84 1.8E-05 39.1 6.5 80 153-245 65-146 (169)
159 PRK05567 inosine 5'-monophosph 90.7 6.8 0.00015 38.6 13.7 161 70-238 165-343 (486)
160 TIGR02668 moaA_archaeal probab 90.7 10 0.00022 34.4 14.0 112 68-186 41-171 (302)
161 PRK08599 coproporphyrinogen II 90.7 5.6 0.00012 37.5 12.7 156 70-232 35-236 (377)
162 PLN02617 imidazole glycerol ph 90.7 7.7 0.00017 39.1 14.2 165 71-243 268-500 (538)
163 TIGR03699 mena_SCO4550 menaqui 90.6 0.86 1.9E-05 42.4 7.1 115 67-185 72-216 (340)
164 TIGR03217 4OH_2_O_val_ald 4-hy 90.6 15 0.00033 34.6 16.0 146 68-220 22-185 (333)
165 TIGR00538 hemN oxygen-independ 90.5 11 0.00024 36.6 14.9 159 69-232 83-286 (455)
166 TIGR00423 radical SAM domain p 90.5 0.6 1.3E-05 43.0 5.9 114 67-184 36-179 (309)
167 PRK13347 coproporphyrinogen II 90.4 4.4 9.6E-05 39.5 12.0 158 70-232 85-287 (453)
168 PRK06552 keto-hydroxyglutarate 90.3 8.1 0.00018 34.2 12.6 154 59-245 14-174 (213)
169 PTZ00314 inosine-5'-monophosph 90.2 2.5 5.3E-05 42.1 10.2 128 55-195 227-374 (495)
170 cd06549 GH18_trifunctional GH1 90.1 2.6 5.6E-05 38.7 9.6 78 121-198 80-171 (298)
171 cd02874 GH18_CFLE_spore_hydrol 90.0 1.4 2.9E-05 40.4 7.7 76 122-197 80-178 (313)
172 TIGR01037 pyrD_sub1_fam dihydr 89.8 0.81 1.8E-05 41.7 6.0 162 58-226 91-290 (300)
173 cd02803 OYE_like_FMN_family Ol 89.6 3.5 7.5E-05 37.8 10.1 121 72-193 143-310 (327)
174 PRK08072 nicotinate-nucleotide 89.5 1.5 3.3E-05 40.5 7.6 75 153-245 173-251 (277)
175 cd03310 CIMS_like CIMS - Cobal 89.3 13 0.00029 33.8 13.6 143 71-219 152-318 (321)
176 cd04727 pdxS PdxS is a subunit 89.3 4.5 9.7E-05 37.7 10.4 162 74-245 19-216 (283)
177 COG0134 TrpC Indole-3-glycerol 89.3 3.2 6.8E-05 38.2 9.4 167 60-243 55-225 (254)
178 TIGR00284 dihydropteroate synt 89.2 14 0.00029 37.1 14.5 167 52-231 144-318 (499)
179 PRK14336 (dimethylallyl)adenos 89.1 7.1 0.00015 37.7 12.3 131 66-199 152-318 (418)
180 PRK06267 hypothetical protein; 89.1 10 0.00022 35.8 13.0 147 66-223 62-237 (350)
181 PRK14325 (dimethylallyl)adenos 89.0 9 0.00019 37.1 12.9 134 66-200 175-344 (444)
182 cd00465 URO-D_CIMS_like The UR 88.9 1.7 3.7E-05 39.2 7.4 71 72-144 146-227 (306)
183 PRK02615 thiamine-phosphate py 88.8 3.7 8E-05 39.2 9.9 160 58-245 150-313 (347)
184 PRK14333 (dimethylallyl)adenos 88.8 7.3 0.00016 37.9 12.2 133 66-200 176-350 (448)
185 cd00003 PNPsynthase Pyridoxine 88.8 7.6 0.00016 35.3 11.3 161 74-245 25-201 (234)
186 PRK05848 nicotinate-nucleotide 88.8 2.1 4.6E-05 39.5 8.0 78 153-245 167-248 (273)
187 TIGR00539 hemN_rel putative ox 88.7 3.4 7.4E-05 38.8 9.6 113 118-232 87-232 (360)
188 PF03328 HpcH_HpaI: HpcH/HpaI 88.7 6.2 0.00013 34.4 10.6 163 74-241 12-199 (221)
189 cd04722 TIM_phosphate_binding 88.6 11 0.00025 30.3 11.8 86 57-147 57-145 (200)
190 PRK04326 methionine synthase; 88.6 6.7 0.00014 36.2 11.3 138 71-220 162-319 (330)
191 TIGR01859 fruc_bis_ald_ fructo 88.6 8.2 0.00018 35.6 11.7 170 66-245 23-221 (282)
192 cd04741 DHOD_1A_like Dihydroor 88.6 9.5 0.00021 35.1 12.2 119 114-236 90-253 (294)
193 PRK09249 coproporphyrinogen II 88.5 23 0.00051 34.4 15.5 157 70-231 84-285 (453)
194 PRK14335 (dimethylallyl)adenos 88.5 18 0.00039 35.3 14.7 154 66-221 180-379 (455)
195 TIGR00736 nifR3_rel_arch TIM-b 88.5 1.2 2.7E-05 40.0 6.2 70 71-144 149-219 (231)
196 PRK06052 5-methyltetrahydropte 88.2 5.1 0.00011 38.4 10.2 67 71-146 147-227 (344)
197 cd03311 CIMS_C_terminal_like C 88.1 3.6 7.7E-05 38.0 9.1 146 71-219 156-329 (332)
198 TIGR02311 HpaI 2,4-dihydroxyhe 88.1 4.2 9.1E-05 36.7 9.4 145 74-227 24-207 (249)
199 TIGR02666 moaA molybdenum cofa 88.1 16 0.00035 33.7 13.5 115 67-186 43-176 (334)
200 PRK00366 ispG 4-hydroxy-3-meth 88.1 4.7 0.0001 38.8 10.0 159 34-218 6-171 (360)
201 PLN02716 nicotinate-nucleotide 88.0 2.7 6E-05 39.5 8.3 84 153-245 185-281 (308)
202 PRK06015 keto-hydroxyglutarate 87.9 8.8 0.00019 33.9 11.1 153 59-245 5-163 (201)
203 PRK08999 hypothetical protein; 87.9 6.3 0.00014 35.9 10.6 161 58-245 133-299 (312)
204 PRK06233 hypothetical protein; 87.8 2.8 6E-05 40.0 8.4 151 71-222 172-369 (372)
205 cd07943 DRE_TIM_HOA 4-hydroxy- 87.8 20 0.00044 32.2 14.8 143 70-220 22-183 (263)
206 PRK06520 5-methyltetrahydropte 87.7 3 6.6E-05 39.7 8.6 150 71-221 171-365 (368)
207 PTZ00413 lipoate synthase; Pro 87.7 4.9 0.00011 39.2 9.9 146 67-215 177-356 (398)
208 PF00218 IGPS: Indole-3-glycer 87.6 1.1 2.5E-05 40.8 5.4 159 70-244 68-228 (254)
209 PRK05660 HemN family oxidoredu 87.5 8.4 0.00018 36.6 11.5 112 119-232 95-239 (378)
210 cd00598 GH18_chitinase-like Th 87.5 4 8.7E-05 34.4 8.4 85 133-219 99-197 (210)
211 PRK05286 dihydroorotate dehydr 87.4 14 0.00031 34.7 12.8 141 94-237 111-300 (344)
212 TIGR02351 thiH thiazole biosyn 87.4 10 0.00023 35.9 12.0 159 67-234 103-298 (366)
213 PRK02412 aroD 3-dehydroquinate 87.4 10 0.00022 34.2 11.4 132 52-186 10-159 (253)
214 TIGR01574 miaB-methiolase tRNA 87.3 17 0.00036 35.2 13.6 134 65-200 172-342 (438)
215 TIGR01302 IMP_dehydrog inosine 87.2 5.2 0.00011 39.1 10.1 163 70-237 161-338 (450)
216 PRK14327 (dimethylallyl)adenos 87.2 31 0.00067 34.6 15.6 132 65-200 239-407 (509)
217 PF03060 NMO: Nitronate monoox 87.1 11 0.00023 35.3 11.7 96 129-237 104-201 (330)
218 PLN02460 indole-3-glycerol-pho 87.1 1.5 3.3E-05 41.7 6.1 171 60-242 128-305 (338)
219 TIGR00612 ispG_gcpE 1-hydroxy- 87.0 7.1 0.00015 37.4 10.4 107 58-175 19-131 (346)
220 PRK13361 molybdenum cofactor b 86.9 17 0.00037 33.7 12.9 113 68-186 46-177 (329)
221 cd01335 Radical_SAM Radical SA 86.9 3.8 8.2E-05 32.8 7.6 75 71-149 32-109 (204)
222 cd02803 OYE_like_FMN_family Ol 86.8 1.7 3.7E-05 39.8 6.2 77 68-145 226-311 (327)
223 PLN02475 5-methyltetrahydropte 86.8 3.5 7.6E-05 43.2 9.1 142 71-218 587-753 (766)
224 TIGR01211 ELP3 histone acetylt 86.7 4 8.7E-05 41.0 9.1 127 70-199 118-302 (522)
225 PLN02334 ribulose-phosphate 3- 86.7 19 0.00042 31.6 12.6 144 61-222 69-224 (229)
226 PRK14337 (dimethylallyl)adenos 86.7 7.6 0.00016 37.8 10.8 137 65-205 175-349 (446)
227 PRK08207 coproporphyrinogen II 86.6 24 0.00051 35.1 14.3 155 70-227 199-399 (488)
228 TIGR01108 oadA oxaloacetate de 86.5 20 0.00044 36.5 14.1 143 70-220 21-191 (582)
229 PRK12677 xylose isomerase; Pro 86.5 9.6 0.00021 36.7 11.3 45 126-170 32-85 (384)
230 cd07937 DRE_TIM_PC_TC_5S Pyruv 86.5 16 0.00034 33.3 12.2 144 71-220 22-191 (275)
231 cd08562 GDPD_EcUgpQ_like Glyce 86.3 4.6 0.0001 34.8 8.3 85 100-191 138-224 (229)
232 TIGR01108 oadA oxaloacetate de 86.3 3.2 6.9E-05 42.2 8.2 104 68-173 147-256 (582)
233 PF04131 NanE: Putative N-acet 86.3 23 0.0005 31.3 12.9 147 75-244 4-163 (192)
234 TIGR01125 MiaB-like tRNA modif 86.3 20 0.00044 34.5 13.5 134 65-199 162-329 (430)
235 cd04743 NPD_PKS 2-Nitropropane 86.2 19 0.00041 34.1 12.8 122 106-238 45-177 (320)
236 COG0620 MetE Methionine syntha 86.2 13 0.00028 35.2 11.8 161 57-221 144-325 (330)
237 PRK07028 bifunctional hexulose 86.1 10 0.00022 36.6 11.4 134 74-222 72-212 (430)
238 cd02911 arch_FMN Archeal FMN-b 86.0 2.8 6.1E-05 37.4 7.0 68 71-145 153-220 (233)
239 TIGR03700 mena_SCO4494 putativ 85.7 5.1 0.00011 37.7 8.9 108 66-178 78-216 (351)
240 TIGR00343 pyridoxal 5'-phospha 85.6 6.6 0.00014 36.7 9.3 108 74-191 21-138 (287)
241 cd02911 arch_FMN Archeal FMN-b 85.5 25 0.00053 31.4 12.7 128 57-193 72-219 (233)
242 COG1856 Uncharacterized homolo 85.2 18 0.0004 33.2 11.6 156 63-221 35-219 (275)
243 PRK09057 coproporphyrinogen II 85.0 13 0.00027 35.4 11.2 153 69-226 37-234 (380)
244 cd08210 RLP_RrRLP Ribulose bis 85.0 5.1 0.00011 38.4 8.6 116 19-144 156-283 (364)
245 COG0042 tRNA-dihydrouridine sy 84.9 27 0.00058 32.8 13.2 134 57-193 66-227 (323)
246 PRK01207 methionine synthase; 84.9 17 0.00037 34.7 12.0 70 71-146 153-237 (343)
247 PRK14328 (dimethylallyl)adenos 84.8 20 0.00042 34.8 12.6 131 65-199 174-341 (439)
248 PRK10550 tRNA-dihydrouridine s 84.7 20 0.00042 33.5 12.2 122 115-244 62-213 (312)
249 PRK05799 coproporphyrinogen II 84.7 27 0.00059 32.8 13.3 156 69-231 36-234 (374)
250 cd07944 DRE_TIM_HOA_like 4-hyd 84.7 17 0.00038 32.9 11.6 21 91-111 6-26 (266)
251 PRK00957 methionine synthase; 84.6 19 0.00042 32.9 12.0 142 71-221 145-302 (305)
252 PF01487 DHquinase_I: Type I 3 84.4 7.2 0.00016 34.0 8.7 121 61-186 1-137 (224)
253 TIGR01305 GMP_reduct_1 guanosi 84.4 11 0.00024 36.0 10.4 115 120-238 96-224 (343)
254 PRK06806 fructose-bisphosphate 84.3 4.9 0.00011 37.1 7.9 131 62-196 76-232 (281)
255 cd07948 DRE_TIM_HCS Saccharomy 84.2 11 0.00025 34.2 10.2 118 91-231 8-132 (262)
256 PRK09016 quinolinate phosphori 84.0 3.9 8.3E-05 38.3 7.1 77 153-245 194-271 (296)
257 PRK05437 isopentenyl pyrophosp 83.9 19 0.00042 34.1 11.9 88 106-193 110-216 (352)
258 PLN02274 inosine-5'-monophosph 83.9 12 0.00025 37.5 10.8 157 70-238 182-363 (505)
259 PRK14040 oxaloacetate decarbox 83.8 4.2 9E-05 41.5 7.8 109 68-178 153-267 (593)
260 PRK05222 5-methyltetrahydropte 83.8 12 0.00025 39.4 11.2 142 71-220 582-749 (758)
261 cd02811 IDI-2_FMN Isopentenyl- 83.7 21 0.00046 33.3 12.0 89 106-194 102-209 (326)
262 TIGR01210 conserved hypothetic 83.7 14 0.0003 34.4 10.7 104 68-173 47-176 (313)
263 cd02940 DHPD_FMN Dihydropyrimi 83.6 2.3 5.1E-05 39.0 5.5 76 68-144 178-280 (299)
264 PRK05458 guanosine 5'-monophos 83.5 13 0.00028 35.3 10.4 109 119-238 87-213 (326)
265 PRK14041 oxaloacetate decarbox 83.5 30 0.00065 34.4 13.4 146 69-220 24-195 (467)
266 TIGR01093 aroD 3-dehydroquinat 83.4 20 0.00043 31.6 11.1 111 59-173 1-126 (228)
267 TIGR02109 PQQ_syn_pqqE coenzym 83.4 34 0.00073 31.8 13.2 150 67-222 37-211 (358)
268 TIGR00676 fadh2 5,10-methylene 83.4 30 0.00065 31.4 12.6 163 62-236 7-193 (272)
269 PF01645 Glu_synthase: Conserv 83.4 9 0.00019 36.9 9.5 118 120-237 152-285 (368)
270 cd03174 DRE_TIM_metallolyase D 83.3 5.3 0.00011 35.1 7.5 84 58-143 131-220 (265)
271 PRK13802 bifunctional indole-3 83.0 4.5 9.7E-05 42.1 7.8 158 70-243 70-229 (695)
272 PF01081 Aldolase: KDPG and KH 82.8 3.1 6.7E-05 36.6 5.7 157 58-245 8-167 (196)
273 PRK12290 thiE thiamine-phospha 82.7 8.1 0.00017 38.1 9.0 158 74-245 221-383 (437)
274 TIGR02319 CPEP_Pphonmut carbox 82.6 3.1 6.8E-05 38.8 5.9 105 72-185 164-277 (294)
275 TIGR01496 DHPS dihydropteroate 82.5 31 0.00067 31.3 12.2 96 67-173 20-126 (257)
276 cd08207 RLP_NonPhot Ribulose b 82.4 1.5 3.3E-05 42.7 3.9 166 19-194 174-361 (406)
277 PRK07428 nicotinate-nucleotide 82.2 4.2 9E-05 37.9 6.5 78 153-245 181-262 (288)
278 PRK07896 nicotinate-nucleotide 82.1 5.8 0.00013 37.0 7.5 80 153-245 185-265 (289)
279 PRK13305 sgbH 3-keto-L-gulonat 81.9 3.1 6.8E-05 37.1 5.4 165 64-243 7-180 (218)
280 PRK10558 alpha-dehydro-beta-de 81.9 29 0.00062 31.5 11.8 147 75-227 32-213 (256)
281 PRK01130 N-acetylmannosamine-6 81.8 28 0.00062 30.1 11.4 118 73-195 78-203 (221)
282 PRK14332 (dimethylallyl)adenos 81.7 29 0.00064 33.9 12.6 132 65-200 181-346 (449)
283 cd01572 QPRTase Quinolinate ph 81.7 5.8 0.00013 36.3 7.3 73 155-245 169-245 (268)
284 PRK14330 (dimethylallyl)adenos 81.5 28 0.00061 33.6 12.2 134 66-200 168-335 (434)
285 cd08208 RLP_Photo Ribulose bis 81.5 3.6 7.7E-05 40.4 6.1 119 19-147 191-320 (424)
286 PF01207 Dus: Dihydrouridine s 81.4 6.9 0.00015 36.3 7.7 139 57-199 53-221 (309)
287 PF12689 Acid_PPase: Acid Phos 81.4 1.5 3.3E-05 37.6 3.2 102 117-227 16-124 (169)
288 PRK06294 coproporphyrinogen II 81.3 16 0.00035 34.6 10.3 102 129-231 104-238 (370)
289 COG0502 BioB Biotin synthase a 81.3 9.3 0.0002 36.5 8.6 161 68-234 85-271 (335)
290 PRK01060 endonuclease IV; Prov 81.1 22 0.00047 31.6 10.6 135 72-206 14-191 (281)
291 PF05853 DUF849: Prokaryotic p 80.6 6.3 0.00014 36.1 7.1 150 67-222 23-196 (272)
292 PRK06978 nicotinate-nucleotide 80.5 5.7 0.00012 37.2 6.8 77 153-245 191-268 (294)
293 cd00452 KDPG_aldolase KDPG and 80.5 19 0.00042 30.6 9.7 106 73-196 66-173 (190)
294 PLN02898 HMP-P kinase/thiamin- 80.5 10 0.00022 37.4 9.0 168 59-245 295-463 (502)
295 PRK14334 (dimethylallyl)adenos 80.3 59 0.0013 31.5 14.4 133 66-200 166-332 (440)
296 PRK05481 lipoyl synthase; Prov 80.2 48 0.001 30.5 13.9 159 66-225 79-264 (289)
297 cd00311 TIM Triosephosphate is 80.2 15 0.00033 33.2 9.4 115 131-245 77-218 (242)
298 COG0157 NadC Nicotinate-nucleo 80.1 10 0.00023 35.3 8.3 79 153-245 173-253 (280)
299 cd00958 DhnA Class I fructose- 79.7 41 0.00089 29.3 12.0 99 68-170 19-127 (235)
300 PRK12581 oxaloacetate decarbox 79.7 5.5 0.00012 39.6 6.8 104 68-173 161-270 (468)
301 TIGR02631 xylA_Arthro xylose i 79.7 9.9 0.00021 36.5 8.4 48 126-173 33-90 (382)
302 TIGR01371 met_syn_B12ind 5-met 79.7 21 0.00046 37.4 11.4 142 71-219 576-743 (750)
303 COG5016 Pyruvate/oxaloacetate 79.6 1.5 3.3E-05 42.9 2.9 103 68-173 154-263 (472)
304 cd02922 FCB2_FMN Flavocytochro 79.6 29 0.00062 33.0 11.4 168 57-238 66-283 (344)
305 cd04732 HisA HisA. Phosphorib 79.6 4.7 0.0001 35.0 5.7 62 174-243 28-91 (234)
306 TIGR02320 PEP_mutase phosphoen 79.5 12 0.00026 34.7 8.6 113 67-184 89-232 (285)
307 PRK05692 hydroxymethylglutaryl 79.5 6.1 0.00013 36.4 6.7 74 68-143 153-229 (287)
308 COG3142 CutC Uncharacterized p 79.3 30 0.00065 31.6 10.7 115 68-186 71-190 (241)
309 PRK13209 L-xylulose 5-phosphat 79.2 20 0.00042 31.9 9.7 119 71-189 22-178 (283)
310 cd02809 alpha_hydroxyacid_oxid 79.1 9.7 0.00021 34.9 7.9 122 68-195 127-257 (299)
311 PRK14042 pyruvate carboxylase 79.0 4.4 9.5E-05 41.4 6.0 104 67-172 151-260 (596)
312 TIGR00542 hxl6Piso_put hexulos 78.9 9.1 0.0002 34.2 7.5 130 70-199 16-184 (279)
313 PRK08385 nicotinate-nucleotide 78.8 7.1 0.00015 36.2 6.9 79 154-245 169-250 (278)
314 TIGR03128 RuMP_HxlA 3-hexulose 78.7 30 0.00065 29.4 10.3 113 75-195 68-187 (206)
315 TIGR03332 salvage_mtnW 2,3-dik 78.6 2.9 6.4E-05 40.8 4.4 117 19-145 170-300 (407)
316 PRK15492 triosephosphate isome 78.5 21 0.00045 32.7 9.8 115 131-245 87-231 (260)
317 PF00478 IMPDH: IMP dehydrogen 78.4 15 0.00033 35.2 9.1 103 128-237 110-222 (352)
318 TIGR03239 GarL 2-dehydro-3-deo 78.4 52 0.0011 29.8 12.7 146 76-227 26-206 (249)
319 TIGR01302 IMP_dehydrog inosine 78.1 4.3 9.4E-05 39.6 5.5 128 57-194 212-356 (450)
320 PRK01261 aroD 3-dehydroquinate 77.9 39 0.00085 30.3 11.2 92 52-147 15-108 (229)
321 PRK12331 oxaloacetate decarbox 77.7 6.4 0.00014 38.8 6.6 105 67-173 151-261 (448)
322 TIGR02320 PEP_mutase phosphoen 77.6 20 0.00043 33.3 9.4 102 74-185 173-281 (285)
323 TIGR00640 acid_CoA_mut_C methy 77.6 8.8 0.00019 31.4 6.4 82 72-163 42-125 (132)
324 cd07937 DRE_TIM_PC_TC_5S Pyruv 77.3 6.9 0.00015 35.7 6.3 19 67-85 115-133 (275)
325 PRK04147 N-acetylneuraminate l 77.1 30 0.00065 31.6 10.4 127 66-215 20-156 (293)
326 PRK06106 nicotinate-nucleotide 77.1 8.8 0.00019 35.7 6.9 75 153-245 179-257 (281)
327 TIGR01578 MiaB-like-B MiaB-lik 77.1 62 0.0013 31.2 13.1 134 65-200 160-328 (420)
328 PRK13585 1-(5-phosphoribosyl)- 77.1 15 0.00033 32.1 8.2 70 71-144 150-221 (241)
329 TIGR00419 tim triosephosphate 77.0 52 0.0011 29.1 12.2 109 131-244 74-187 (205)
330 TIGR01858 tag_bisphos_ald clas 77.0 11 0.00024 34.9 7.6 79 69-147 152-232 (282)
331 PF01717 Meth_synt_2: Cobalami 76.9 45 0.00098 30.7 11.7 145 71-220 155-322 (324)
332 TIGR03572 WbuZ glycosyl amidat 76.8 45 0.00098 29.0 11.2 70 126-195 154-228 (232)
333 COG1625 Fe-S oxidoreductase, r 76.7 36 0.00078 33.5 11.2 135 69-219 93-243 (414)
334 PRK07360 FO synthase subunit 2 76.6 12 0.00027 35.5 8.0 113 67-183 91-234 (371)
335 cd00408 DHDPS-like Dihydrodipi 76.5 52 0.0011 29.4 11.7 40 66-108 14-53 (281)
336 PRK06559 nicotinate-nucleotide 76.5 7.2 0.00016 36.4 6.2 77 153-245 182-260 (290)
337 PRK11858 aksA trans-homoaconit 76.3 65 0.0014 30.8 12.8 127 93-245 14-152 (378)
338 COG0685 MetF 5,10-methylenetet 76.2 65 0.0014 29.8 13.0 131 57-189 14-173 (291)
339 PRK14041 oxaloacetate decarbox 76.1 7.1 0.00015 38.7 6.4 104 68-173 151-260 (467)
340 cd08209 RLP_DK-MTP-1-P-enolase 76.1 3 6.4E-05 40.5 3.7 117 19-145 155-285 (391)
341 PRK08072 nicotinate-nucleotide 76.1 8.2 0.00018 35.7 6.5 61 74-146 199-261 (277)
342 PRK04208 rbcL ribulose bisopho 76.0 4.2 9.1E-05 40.4 4.8 118 19-145 191-322 (468)
343 TIGR00735 hisF imidazoleglycer 75.9 18 0.00039 32.3 8.5 95 70-168 155-253 (254)
344 PRK05742 nicotinate-nucleotide 75.9 5.2 0.00011 37.0 5.1 62 73-146 199-262 (277)
345 COG0107 HisF Imidazoleglycerol 75.7 9.2 0.0002 35.1 6.5 92 74-169 159-254 (256)
346 cd02932 OYE_YqiM_FMN Old yello 75.7 24 0.00052 32.8 9.6 121 72-193 156-319 (336)
347 PRK12331 oxaloacetate decarbox 75.5 77 0.0017 31.3 13.4 143 70-220 26-196 (448)
348 PLN02495 oxidoreductase, actin 75.4 14 0.00029 35.9 8.0 62 57-122 113-189 (385)
349 COG0821 gcpE 1-hydroxy-2-methy 75.3 24 0.00052 34.0 9.4 126 36-175 2-133 (361)
350 PRK08195 4-hyroxy-2-oxovalerat 75.1 2.8 6.1E-05 39.5 3.2 104 67-172 141-252 (337)
351 cd08212 RuBisCO_large_I Ribulo 75.0 3.2 7E-05 41.0 3.7 117 19-145 176-306 (450)
352 cd01945 ribokinase_group_B Rib 74.9 34 0.00075 29.9 10.0 109 72-192 64-177 (284)
353 cd04726 KGPDC_HPS 3-Keto-L-gul 74.9 38 0.00083 28.5 9.9 113 75-195 69-187 (202)
354 PRK08445 hypothetical protein; 74.8 13 0.00027 35.3 7.5 114 66-182 72-214 (348)
355 cd00381 IMPDH IMPDH: The catal 74.8 10 0.00023 35.5 6.9 81 57-146 82-164 (325)
356 cd04734 OYE_like_3_FMN Old yel 74.8 8 0.00017 36.4 6.2 88 57-146 212-316 (343)
357 TIGR00259 thylakoid_BtpA membr 74.7 69 0.0015 29.5 12.0 157 60-220 82-252 (257)
358 PLN02446 (5-phosphoribosyl)-5- 74.6 23 0.0005 32.6 8.9 90 120-214 36-129 (262)
359 PLN02951 Molybderin biosynthes 74.6 81 0.0018 30.1 14.1 113 68-186 91-222 (373)
360 cd04733 OYE_like_2_FMN Old yel 74.5 8.9 0.00019 35.8 6.4 78 68-147 234-324 (338)
361 cd04725 OMP_decarboxylase_like 74.5 19 0.00041 31.6 8.1 98 64-166 2-103 (216)
362 TIGR01163 rpe ribulose-phospha 74.5 35 0.00076 28.8 9.6 122 62-196 61-195 (210)
363 cd06599 GH31_glycosidase_Aec37 74.5 44 0.00095 31.0 10.9 81 151-234 72-167 (317)
364 PRK00748 1-(5-phosphoribosyl)- 74.3 24 0.00051 30.6 8.7 119 66-193 80-219 (233)
365 PRK00979 tetrahydromethanopter 74.2 20 0.00043 33.9 8.6 21 157-177 138-160 (308)
366 PRK15452 putative protease; Pr 74.2 13 0.00028 36.6 7.6 104 119-241 5-125 (443)
367 PLN02826 dihydroorotate dehydr 74.0 47 0.001 32.4 11.4 108 127-237 203-352 (409)
368 PRK15447 putative protease; Pr 74.0 17 0.00037 33.6 8.1 98 124-241 14-122 (301)
369 TIGR00007 phosphoribosylformim 73.7 13 0.00029 32.2 6.9 70 71-144 146-217 (230)
370 PRK07709 fructose-bisphosphate 73.7 9.7 0.00021 35.4 6.3 79 69-147 155-235 (285)
371 TIGR00078 nadC nicotinate-nucl 73.6 13 0.00028 34.0 7.1 74 154-245 164-241 (265)
372 cd07948 DRE_TIM_HCS Saccharomy 73.5 60 0.0013 29.5 11.4 138 70-220 22-183 (262)
373 TIGR02660 nifV_homocitr homoci 73.5 11 0.00024 35.7 6.8 102 67-170 139-247 (365)
374 PF02879 PGM_PMM_II: Phosphogl 73.4 14 0.00029 28.2 6.2 77 158-235 14-94 (104)
375 PRK00694 4-hydroxy-3-methylbut 73.4 26 0.00057 35.9 9.6 117 115-234 28-168 (606)
376 PRK08367 porA pyruvate ferredo 73.3 7.3 0.00016 37.6 5.6 54 152-205 274-332 (394)
377 PLN02925 4-hydroxy-3-methylbut 73.3 59 0.0013 34.2 12.2 114 115-234 93-233 (733)
378 cd00502 DHQase_I Type I 3-dehy 73.2 55 0.0012 28.5 10.7 119 60-186 2-137 (225)
379 PRK14339 (dimethylallyl)adenos 73.0 93 0.002 30.1 14.0 154 65-219 154-349 (420)
380 cd07938 DRE_TIM_HMGL 3-hydroxy 72.9 12 0.00025 34.3 6.6 74 68-143 147-223 (274)
381 PRK07188 nicotinate phosphorib 72.7 13 0.00027 35.7 7.0 108 128-245 190-299 (352)
382 PRK03512 thiamine-phosphate py 72.6 33 0.00071 30.1 9.1 153 74-245 23-177 (211)
383 cd03312 CIMS_N_terminal_like C 72.4 11 0.00023 35.9 6.5 70 72-147 184-263 (360)
384 PF00478 IMPDH: IMP dehydrogen 72.4 6.1 0.00013 37.9 4.8 131 55-196 94-242 (352)
385 PRK12857 fructose-1,6-bisphosp 72.4 18 0.00039 33.6 7.7 79 69-147 154-234 (284)
386 cd08564 GDPD_GsGDE_like Glycer 72.3 23 0.0005 31.6 8.3 86 100-190 154-251 (265)
387 cd00739 DHPS DHPS subgroup of 72.3 73 0.0016 28.9 11.6 96 67-171 21-126 (257)
388 TIGR00683 nanA N-acetylneurami 72.2 79 0.0017 28.9 12.3 126 66-214 17-153 (290)
389 PRK12737 gatY tagatose-bisphos 72.0 11 0.00023 35.1 6.1 79 69-147 154-234 (284)
390 PTZ00300 pyruvate kinase; Prov 72.0 34 0.00075 33.9 10.0 90 129-225 151-246 (454)
391 PRK12330 oxaloacetate decarbox 72.0 10 0.00022 38.1 6.3 105 67-173 152-264 (499)
392 TIGR03326 rubisco_III ribulose 71.9 8.1 0.00018 37.8 5.6 118 19-146 175-306 (412)
393 TIGR00433 bioB biotin syntheta 71.8 7.1 0.00015 35.1 4.9 20 73-92 123-142 (296)
394 PF04481 DUF561: Protein of un 71.7 11 0.00024 34.2 6.0 74 57-144 14-87 (242)
395 PF01261 AP_endonuc_2: Xylose 71.6 17 0.00037 29.9 6.8 103 132-237 2-138 (213)
396 cd02808 GltS_FMN Glutamate syn 71.6 50 0.0011 31.8 10.9 87 152-238 199-297 (392)
397 cd08556 GDPD Glycerophosphodie 71.5 24 0.00051 28.9 7.6 84 101-191 98-185 (189)
398 PRK04180 pyridoxal biosynthesi 71.3 40 0.00086 31.7 9.7 86 100-191 59-145 (293)
399 cd06593 GH31_xylosidase_YicI Y 71.3 82 0.0018 28.7 11.9 36 141-178 57-92 (308)
400 TIGR02319 CPEP_Pphonmut carbox 71.2 34 0.00074 32.0 9.3 111 67-183 89-221 (294)
401 TIGR00290 MJ0570_dom MJ0570-re 71.2 33 0.00071 30.8 8.9 116 102-218 45-169 (223)
402 cd07939 DRE_TIM_NifV Streptomy 71.1 15 0.00032 32.9 6.8 20 68-87 137-156 (259)
403 cd02933 OYE_like_FMN Old yello 71.0 11 0.00025 35.4 6.2 75 68-145 239-314 (338)
404 PRK08318 dihydropyrimidine deh 70.9 79 0.0017 30.4 12.1 130 105-236 88-263 (420)
405 PRK14905 triosephosphate isome 70.8 61 0.0013 31.1 11.1 114 131-244 88-231 (355)
406 cd00423 Pterin_binding Pterin 70.8 80 0.0017 28.3 13.4 104 66-177 20-132 (258)
407 cd06545 GH18_3CO4_chitinase Th 70.7 12 0.00025 33.3 6.0 65 133-197 94-164 (253)
408 PF06073 DUF934: Bacterial pro 70.5 14 0.0003 29.8 5.8 65 169-243 1-66 (110)
409 PRK05301 pyrroloquinoline quin 70.4 96 0.0021 29.1 13.8 150 67-223 46-224 (378)
410 cd00947 TBP_aldolase_IIB Tagat 70.3 11 0.00025 34.8 5.9 79 69-147 147-228 (276)
411 PRK09856 fructoselysine 3-epim 70.3 31 0.00068 30.4 8.6 138 61-200 4-184 (275)
412 PRK08662 nicotinate phosphorib 70.2 29 0.00062 33.0 8.8 52 188-245 228-280 (343)
413 PRK10415 tRNA-dihydrouridine s 70.2 29 0.00062 32.4 8.7 88 71-163 150-239 (321)
414 PRK05926 hypothetical protein; 70.1 23 0.0005 33.9 8.2 126 67-198 99-260 (370)
415 PRK13523 NADPH dehydrogenase N 70.0 17 0.00037 34.3 7.2 122 71-193 143-304 (337)
416 PRK11320 prpB 2-methylisocitra 69.8 34 0.00074 31.9 9.0 23 68-90 91-113 (292)
417 PRK14338 (dimethylallyl)adenos 69.8 21 0.00045 34.9 8.0 131 66-199 183-349 (459)
418 PRK04165 acetyl-CoA decarbonyl 69.7 98 0.0021 30.8 12.6 151 48-219 82-251 (450)
419 COG1082 IolE Sugar phosphate i 69.7 51 0.0011 28.7 9.8 138 60-199 3-179 (274)
420 PRK12738 kbaY tagatose-bisphos 69.6 14 0.0003 34.4 6.3 79 69-147 154-234 (286)
421 PRK04128 1-(5-phosphoribosyl)- 69.5 82 0.0018 28.0 14.5 152 72-243 32-200 (228)
422 PRK06806 fructose-bisphosphate 69.5 17 0.00038 33.5 7.0 78 70-147 153-232 (281)
423 TIGR02493 PFLA pyruvate format 69.4 74 0.0016 27.4 12.3 129 88-221 68-233 (235)
424 PRK09282 pyruvate carboxylase 69.4 1.2E+02 0.0027 31.0 13.6 146 69-220 25-196 (592)
425 PLN02561 triosephosphate isome 69.3 64 0.0014 29.5 10.5 112 131-244 81-222 (253)
426 PF04551 GcpE: GcpE protein; 69.1 16 0.00035 35.2 6.8 105 59-175 17-141 (359)
427 PRK04452 acetyl-CoA decarbonyl 69.1 51 0.0011 31.3 10.1 130 79-216 85-232 (319)
428 PRK09195 gatY tagatose-bisphos 68.9 13 0.00028 34.5 6.0 79 69-147 154-234 (284)
429 PRK00366 ispG 4-hydroxy-3-meth 68.8 85 0.0018 30.4 11.5 108 115-234 25-140 (360)
430 cd04729 NanE N-acetylmannosami 68.1 80 0.0017 27.3 11.0 115 74-194 83-206 (219)
431 PF01729 QRPTase_C: Quinolinat 68.0 21 0.00046 30.5 6.7 87 104-193 67-154 (169)
432 cd07939 DRE_TIM_NifV Streptomy 68.0 90 0.002 27.9 14.2 141 68-220 18-181 (259)
433 cd04733 OYE_like_2_FMN Old yel 68.0 28 0.00061 32.4 8.1 122 70-193 149-321 (338)
434 PRK03114 NTPase; Reviewed 68.0 18 0.0004 31.2 6.4 58 178-236 13-72 (169)
435 PF01055 Glyco_hydro_31: Glyco 67.9 15 0.00032 35.2 6.4 118 106-236 48-181 (441)
436 COG0329 DapA Dihydrodipicolina 67.8 1E+02 0.0022 28.5 12.6 127 66-215 21-156 (299)
437 PRK06801 hypothetical protein; 67.8 29 0.00064 32.2 8.1 78 70-147 156-235 (286)
438 PRK02048 4-hydroxy-3-methylbut 67.7 34 0.00074 35.2 9.1 117 115-234 24-164 (611)
439 PRK10076 pyruvate formate lyas 67.7 12 0.00027 33.0 5.4 114 126-244 20-151 (213)
440 PRK02083 imidazole glycerol ph 67.7 35 0.00075 30.3 8.4 93 71-169 154-252 (253)
441 PRK09997 hydroxypyruvate isome 67.6 23 0.0005 31.2 7.2 127 65-199 4-180 (258)
442 PRK05826 pyruvate kinase; Prov 67.4 39 0.00085 33.5 9.4 96 124-226 172-274 (465)
443 TIGR01306 GMP_reduct_2 guanosi 67.4 84 0.0018 29.8 11.2 103 129-238 97-210 (321)
444 PTZ00372 endonuclease 4-like p 67.3 95 0.0021 30.5 11.8 10 121-130 159-168 (413)
445 cd06811 PLPDE_III_yhfX_like Ty 67.2 1.2E+02 0.0026 29.0 14.0 141 74-234 68-234 (382)
446 TIGR00736 nifR3_rel_arch TIM-b 67.1 97 0.0021 27.9 13.7 136 56-193 66-219 (231)
447 PRK14326 (dimethylallyl)adenos 67.0 29 0.00064 34.5 8.5 133 66-200 185-352 (502)
448 PRK11320 prpB 2-methylisocitra 67.0 13 0.00029 34.6 5.7 104 72-185 165-275 (292)
449 cd08206 RuBisCO_large_I_II_III 66.9 8.3 0.00018 37.8 4.5 118 19-145 163-294 (414)
450 CHL00040 rbcL ribulose-1,5-bis 66.7 4.7 0.0001 40.2 2.8 118 19-145 198-329 (475)
451 PTZ00170 D-ribulose-5-phosphat 66.7 58 0.0013 28.8 9.5 147 60-221 68-222 (228)
452 TIGR02317 prpB methylisocitrat 66.7 15 0.00032 34.1 5.9 104 72-185 160-270 (285)
453 TIGR03217 4OH_2_O_val_ald 4-hy 66.6 6.2 0.00013 37.2 3.4 105 67-173 140-252 (333)
454 cd01572 QPRTase Quinolinate ph 66.5 16 0.00034 33.5 6.0 59 74-144 193-253 (268)
455 cd00377 ICL_PEPM Members of th 66.5 86 0.0019 28.1 10.7 121 67-193 81-225 (243)
456 PRK14567 triosephosphate isome 66.4 97 0.0021 28.4 11.1 114 131-245 78-221 (253)
457 PRK14114 1-(5-phosphoribosyl)- 66.4 11 0.00025 33.8 5.0 61 175-244 30-92 (241)
458 TIGR02317 prpB methylisocitrat 66.4 47 0.001 30.9 9.2 24 67-90 85-108 (285)
459 TIGR00737 nifR3_yhdG putative 66.4 19 0.00041 33.3 6.6 75 71-147 148-224 (319)
460 cd00952 CHBPH_aldolase Trans-o 66.3 1.1E+02 0.0024 28.3 11.8 126 66-214 25-160 (309)
461 cd00953 KDG_aldolase KDG (2-ke 66.2 1E+02 0.0023 27.9 13.2 126 66-215 16-147 (279)
462 PRK09282 pyruvate carboxylase 66.1 23 0.0005 36.1 7.7 104 68-173 152-261 (592)
463 PRK09875 putative hydrolase; P 66.1 32 0.00069 32.0 8.0 83 113-199 150-245 (292)
464 PRK08610 fructose-bisphosphate 66.1 16 0.00035 34.0 6.0 79 69-147 155-235 (286)
465 TIGR01417 PTS_I_fam phosphoeno 65.9 37 0.0008 34.4 9.0 91 136-227 381-498 (565)
466 PRK12999 pyruvate carboxylase; 65.9 11 0.00024 41.4 5.6 104 67-173 688-798 (1146)
467 PF00682 HMGL-like: HMGL-like 65.8 90 0.002 27.1 12.2 139 70-222 14-181 (237)
468 cd00950 DHDPS Dihydrodipicolin 65.7 1E+02 0.0022 27.7 11.7 126 66-214 17-151 (284)
469 TIGR02494 PFLE_PFLC glycyl-rad 65.7 19 0.00042 32.4 6.4 38 155-192 144-181 (295)
470 PF00704 Glyco_hydro_18: Glyco 65.7 13 0.00028 33.6 5.3 66 131-196 108-192 (343)
471 TIGR00190 thiC thiamine biosyn 65.6 1.1E+02 0.0023 30.3 11.6 106 130-240 145-272 (423)
472 TIGR01334 modD putative molybd 65.6 21 0.00046 33.1 6.7 129 58-193 123-262 (277)
473 cd02930 DCR_FMN 2,4-dienoyl-Co 65.6 10 0.00022 35.7 4.7 78 68-145 222-306 (353)
474 PRK05742 nicotinate-nucleotide 65.4 14 0.00031 34.1 5.6 74 154-245 176-252 (277)
475 cd08148 RuBisCO_large Ribulose 65.4 9.8 0.00021 36.6 4.6 117 19-145 158-287 (366)
476 PRK10605 N-ethylmaleimide redu 65.3 18 0.00039 34.4 6.4 92 73-176 252-344 (362)
477 TIGR01418 PEP_synth phosphoeno 65.3 39 0.00084 35.7 9.3 107 136-244 625-756 (782)
478 PRK06801 hypothetical protein; 65.2 1.2E+02 0.0025 28.3 11.5 170 66-245 25-224 (286)
479 TIGR02090 LEU1_arch isopropylm 65.2 76 0.0016 30.1 10.5 132 93-245 10-148 (363)
480 TIGR01212 radical SAM protein, 65.1 92 0.002 28.7 10.9 67 133-199 131-220 (302)
481 cd07943 DRE_TIM_HOA 4-hydroxy- 65.0 22 0.00049 31.8 6.7 113 68-187 110-239 (263)
482 smart00636 Glyco_18 Glycosyl h 65.0 27 0.00058 31.9 7.3 67 131-197 100-185 (334)
483 TIGR01303 IMP_DH_rel_1 IMP deh 65.0 71 0.0015 31.8 10.6 103 128-237 227-339 (475)
484 TIGR00612 ispG_gcpE 1-hydroxy- 64.8 47 0.001 31.9 8.9 107 115-234 17-131 (346)
485 TIGR01235 pyruv_carbox pyruvat 64.8 12 0.00027 41.0 5.7 104 68-174 687-797 (1143)
486 TIGR00343 pyridoxal 5'-phospha 64.7 65 0.0014 30.2 9.7 64 73-148 79-144 (287)
487 PF00121 TIM: Triosephosphate 64.6 23 0.0005 32.0 6.7 115 131-245 77-221 (244)
488 PRK08575 5-methyltetrahydropte 64.6 11 0.00024 35.1 4.8 136 72-219 163-319 (326)
489 cd01573 modD_like ModD; Quinol 64.6 19 0.00042 33.0 6.2 76 155-245 171-249 (272)
490 TIGR01036 pyrD_sub2 dihydrooro 64.0 1.3E+02 0.0028 28.3 12.2 142 93-237 107-299 (335)
491 PF00701 DHDPS: Dihydrodipicol 63.9 58 0.0013 29.4 9.2 127 66-215 18-153 (289)
492 PF00215 OMPdecase: Orotidine 63.9 19 0.00041 31.6 5.8 113 64-183 4-131 (226)
493 cd06591 GH31_xylosidase_XylS X 63.9 99 0.0022 28.6 10.9 91 141-235 57-159 (319)
494 PLN02623 pyruvate kinase 63.8 43 0.00092 34.4 8.9 89 131-226 284-378 (581)
495 PRK10128 2-keto-3-deoxy-L-rham 63.8 1.2E+02 0.0026 27.8 11.4 145 76-226 32-212 (267)
496 cd06598 GH31_transferase_CtsZ 63.7 1.1E+02 0.0023 28.4 11.0 82 151-234 69-163 (317)
497 cd08213 RuBisCO_large_III Ribu 63.6 9.5 0.00021 37.3 4.2 117 19-145 162-292 (412)
498 PRK10812 putative DNAse; Provi 63.6 38 0.00081 30.8 7.9 99 114-217 123-235 (265)
499 COG2896 MoaA Molybdenum cofact 63.3 75 0.0016 30.2 10.0 121 71-198 47-193 (322)
500 PRK13210 putative L-xylulose 5 63.2 64 0.0014 28.4 9.2 129 70-199 16-184 (284)
No 1
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3e-74 Score=506.15 Aligned_cols=187 Identities=59% Similarity=0.925 Sum_probs=182.4
Q ss_pred CCcEEeeeecccChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHH
Q 025927 56 SDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFI 135 (246)
Q Consensus 56 ~~~~IsPSIl~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~ 135 (246)
.+.+|+||||++|+++|++|+++++++|+||+|+||||||||||+||||+++++||+.|++|+||||||++|++|++.|+
T Consensus 2 ~~~~iapSILsaD~~~l~~el~~~~~agad~iH~DVMDghFVPNiTfGp~~v~~l~~~t~~p~DvHLMV~~p~~~i~~fa 81 (220)
T COG0036 2 KMMKIAPSILSADFARLGEELKALEAAGADLIHIDVMDGHFVPNITFGPPVVKALRKITDLPLDVHLMVENPDRYIEAFA 81 (220)
T ss_pred CCceeeeehhhCCHhHHHHHHHHHHHcCCCEEEEeccCCCcCCCcccCHHHHHHHhhcCCCceEEEEecCCHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCEEEEccCCcccccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhhhcceEEEEeecCCCCCCcccHHHHHHHHH
Q 025927 136 KAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISD 215 (246)
Q Consensus 136 ~agad~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~~vD~VLvMsV~PGfgGQ~F~~~~l~KI~~ 215 (246)
++|||+||||+|+ +.++.|+|++||+.|+|+||+|||+||++.+++||+++|+||+|||+||||||+|+|++++||++
T Consensus 82 ~agad~It~H~E~--~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~VllMsVnPGfgGQ~Fi~~~l~Ki~~ 159 (220)
T COG0036 82 KAGADIITFHAEA--TEHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDLVLLMSVNPGFGGQKFIPEVLEKIRE 159 (220)
T ss_pred HhCCCEEEEEecc--CcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCCEEEEEeECCCCcccccCHHHHHHHHH
Confidence 9999999999995 68999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCeEEEeCCCChhhhhhccc
Q 025927 216 LRRMCLEKGVNPWIEVDGGVGPKNAYKVPN 245 (246)
Q Consensus 216 lr~l~~~~~~~~~I~VDGGI~~e~i~~l~~ 245 (246)
+|+++++++ ++.||||||||.+|++++.+
T Consensus 160 lr~~~~~~~-~~~IeVDGGI~~~t~~~~~~ 188 (220)
T COG0036 160 LRAMIDERL-DILIEVDGGINLETIKQLAA 188 (220)
T ss_pred HHHHhcccC-CeEEEEeCCcCHHHHHHHHH
Confidence 999999877 89999999999999999864
No 2
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=100.00 E-value=5.3e-71 Score=488.55 Aligned_cols=188 Identities=49% Similarity=0.810 Sum_probs=182.5
Q ss_pred CCcEEeeeecccChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccC-CCCCeeEEEeccCcccchHHH
Q 025927 56 SDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDF 134 (246)
Q Consensus 56 ~~~~IsPSIl~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~-t~~plDvHLMV~~P~~~i~~~ 134 (246)
.++.|+|||||+|+.+|++++++++++|+||+|+||||||||||++|||++++++|++ |++|+||||||+||++|++.|
T Consensus 2 ~~~~i~pSil~ad~~~l~~~i~~l~~~g~d~lHiDimDG~FVPN~tfg~~~i~~lr~~~~~~~~dvHLMv~~P~~~i~~~ 81 (223)
T PRK08745 2 QPTAIAPSILSADFARLGEEVDNVLKAGADWVHFDVMDNHYVPNLTIGPMVCQALRKHGITAPIDVHLMVEPVDRIVPDF 81 (223)
T ss_pred CCcEEEeehhhcCHHHHHHHHHHHHHcCCCEEEEecccCccCCCcccCHHHHHHHHhhCCCCCEEEEeccCCHHHHHHHH
Confidence 3568999999999999999999999999999999999999999999999999999998 799999999999999999999
Q ss_pred HhcCCCEEEEccCCcccccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhhhcceEEEEeecCCCCCCcccHHHHHHHH
Q 025927 135 IKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKIS 214 (246)
Q Consensus 135 ~~agad~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~~vD~VLvMsV~PGfgGQ~F~~~~l~KI~ 214 (246)
+++|||+||||+|+ +.++.++|++||++|+|+||||||+||++.+++||+++|+||+|||+||||||+|+|++++||+
T Consensus 82 ~~~gad~I~~H~Ea--~~~~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~~vD~VlvMtV~PGf~GQ~fi~~~l~KI~ 159 (223)
T PRK08745 82 ADAGATTISFHPEA--SRHVHRTIQLIKSHGCQAGLVLNPATPVDILDWVLPELDLVLVMSVNPGFGGQAFIPSALDKLR 159 (223)
T ss_pred HHhCCCEEEEcccC--cccHHHHHHHHHHCCCceeEEeCCCCCHHHHHHHHhhcCEEEEEEECCCCCCccccHHHHHHHH
Confidence 99999999999996 5789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCeEEEeCCCChhhhhhccc
Q 025927 215 DLRRMCLEKGVNPWIEVDGGVGPKNAYKVPN 245 (246)
Q Consensus 215 ~lr~l~~~~~~~~~I~VDGGI~~e~i~~l~~ 245 (246)
++|++++++++++.|+||||||.+|++++++
T Consensus 160 ~l~~~~~~~~~~~~IeVDGGI~~eti~~l~~ 190 (223)
T PRK08745 160 AIRKKIDALGKPIRLEIDGGVKADNIGAIAA 190 (223)
T ss_pred HHHHHHHhcCCCeeEEEECCCCHHHHHHHHH
Confidence 9999999999999999999999999999865
No 3
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=100.00 E-value=2e-70 Score=486.67 Aligned_cols=187 Identities=35% Similarity=0.680 Sum_probs=180.7
Q ss_pred CcEEeeeecccChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHh
Q 025927 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIK 136 (246)
Q Consensus 57 ~~~IsPSIl~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~ 136 (246)
..+|+|||||+|+.+|+++++++++ |+||+|+||||||||||++|||+++++||++|++|+||||||+||++|++.|++
T Consensus 2 ~~~I~pSil~ad~~~l~~el~~l~~-g~d~lH~DiMDG~FVPN~tfg~~~i~~ir~~t~~~~DvHLMv~~P~~~i~~~~~ 80 (229)
T PRK09722 2 RMKISPSLMCMDLLKFKEQIEFLNS-KADYFHIDIMDGHFVPNLTLSPFFVSQVKKLASKPLDVHLMVTDPQDYIDQLAD 80 (229)
T ss_pred CceEEeehhhcCHHHHHHHHHHHHh-CCCEEEEecccCccCCCcccCHHHHHHHHhcCCCCeEEEEEecCHHHHHHHHHH
Confidence 4679999999999999999999998 899999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEccCCcccccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhhhcceEEEEeecCCCCCCcccHHHHHHHHHH
Q 025927 137 AGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDL 216 (246)
Q Consensus 137 agad~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~~vD~VLvMsV~PGfgGQ~F~~~~l~KI~~l 216 (246)
+|||+||||+|+. ..++.++|++||++|+|+||||||+||++.+++||+++|+||||||+||||||+|+|++++||+++
T Consensus 81 aGad~it~H~Ea~-~~~~~~~i~~Ik~~G~kaGlalnP~T~~~~l~~~l~~vD~VLvMsV~PGf~GQ~fi~~~l~KI~~l 159 (229)
T PRK09722 81 AGADFITLHPETI-NGQAFRLIDEIRRAGMKVGLVLNPETPVESIKYYIHLLDKITVMTVDPGFAGQPFIPEMLDKIAEL 159 (229)
T ss_pred cCCCEEEECccCC-cchHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHhcCEEEEEEEcCCCcchhccHHHHHHHHHH
Confidence 9999999999962 257999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCeEEEeCCCChhhhhhccc
Q 025927 217 RRMCLEKGVNPWIEVDGGVGPKNAYKVPN 245 (246)
Q Consensus 217 r~l~~~~~~~~~I~VDGGI~~e~i~~l~~ 245 (246)
|++++++++++.||||||||.+|++++++
T Consensus 160 r~~~~~~~~~~~IeVDGGI~~~~i~~~~~ 188 (229)
T PRK09722 160 KALRERNGLEYLIEVDGSCNQKTYEKLME 188 (229)
T ss_pred HHHHHhcCCCeEEEEECCCCHHHHHHHHH
Confidence 99999999999999999999999998865
No 4
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=100.00 E-value=1.3e-69 Score=480.99 Aligned_cols=185 Identities=26% Similarity=0.409 Sum_probs=179.9
Q ss_pred CcEEeeeecccChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHh
Q 025927 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIK 136 (246)
Q Consensus 57 ~~~IsPSIl~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~ 136 (246)
+..|+|||||+|+.+|++++++++++|+||+|+||||||||||++|||++++++|+ ++|+||||||+||++|++.|++
T Consensus 12 ~~~I~pSil~ad~~~l~~el~~l~~~g~d~lHiDVMDG~FVPNitfGp~~i~~i~~--~~~~DvHLMv~~P~~~i~~~~~ 89 (228)
T PRK08091 12 QQPISVGILASNWLKFNETLTTLSENQLRLLHFDIADGQFSPFFTVGAIAIKQFPT--HCFKDVHLMVRDQFEVAKACVA 89 (228)
T ss_pred CCeEEeehhhcCHHHHHHHHHHHHHCCCCEEEEeccCCCcCCccccCHHHHHHhCC--CCCEEEEeccCCHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999984 7899999999999999999999
Q ss_pred cCCCEEEEccCCcccccHHHHHHHHHHcCC--cEEEEEcCCCChHHHHHhhhhcceEEEEeecCCCCCCcccHHHHHHHH
Q 025927 137 AGADIVSVHCEQSSTIHLHRTLNQIKDLGA--KAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKIS 214 (246)
Q Consensus 137 agad~It~H~E~~~~~~~~~~i~~Ik~~G~--k~GlAlnP~Tpve~l~~~l~~vD~VLvMsV~PGfgGQ~F~~~~l~KI~ 214 (246)
+|||+||||+|+ +.++.++|++||++|+ |+||||||+||++.+++||+++|+||+|||+||||||+|++.+++||+
T Consensus 90 aGad~It~H~Ea--~~~~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~~vD~VLiMtV~PGfgGQ~f~~~~l~KI~ 167 (228)
T PRK08091 90 AGADIVTLQVEQ--THDLALTIEWLAKQKTTVLIGLCLCPETPISLLEPYLDQIDLIQILTLDPRTGTKAPSDLILDRVI 167 (228)
T ss_pred hCCCEEEEcccC--cccHHHHHHHHHHCCCCceEEEEECCCCCHHHHHHHHhhcCEEEEEEECCCCCCccccHHHHHHHH
Confidence 999999999996 5789999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCeEEEeCCCChhhhhhccc
Q 025927 215 DLRRMCLEKGVNPWIEVDGGVGPKNAYKVPN 245 (246)
Q Consensus 215 ~lr~l~~~~~~~~~I~VDGGI~~e~i~~l~~ 245 (246)
++|++++++|+++.||||||||.+|++++++
T Consensus 168 ~lr~~~~~~~~~~~IeVDGGI~~~ti~~l~~ 198 (228)
T PRK08091 168 QVENRLGNRRVEKLISIDGSMTLELASYLKQ 198 (228)
T ss_pred HHHHHHHhcCCCceEEEECCCCHHHHHHHHH
Confidence 9999999999999999999999999999865
No 5
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=100.00 E-value=6e-70 Score=475.04 Aligned_cols=185 Identities=50% Similarity=0.868 Sum_probs=171.4
Q ss_pred EEeeeecccChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcC
Q 025927 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAG 138 (246)
Q Consensus 59 ~IsPSIl~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~ag 138 (246)
+|||||||+|+.+|++++++++++|+||+|+||||||||||++|||+++++||++|++|+||||||+||++|++.|+++|
T Consensus 1 kI~pSil~ad~~~l~~~i~~l~~~g~d~lHiDiMDg~fvpn~~~g~~~i~~i~~~~~~~~DvHLMv~~P~~~i~~~~~~g 80 (201)
T PF00834_consen 1 KISPSILSADFLNLEEEIKRLEEAGADWLHIDIMDGHFVPNLTFGPDIIKAIRKITDLPLDVHLMVENPERYIEEFAEAG 80 (201)
T ss_dssp EEEEBGGGS-GGGHHHHHHHHHHTT-SEEEEEEEBSSSSSSB-B-HHHHHHHHTTSSSEEEEEEESSSGGGHHHHHHHHT
T ss_pred CeehhhhhCCHHHHHHHHHHHHHcCCCEEEEeecccccCCcccCCHHHHHHHhhcCCCcEEEEeeeccHHHHHHHHHhcC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEccCCcccccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhhhcceEEEEeecCCCCCCcccHHHHHHHHHHHH
Q 025927 139 ADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRR 218 (246)
Q Consensus 139 ad~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~~vD~VLvMsV~PGfgGQ~F~~~~l~KI~~lr~ 218 (246)
+++|+||+|+ +.++.+++++||++|+|+||||||+||++.+++|++++|+||+|||+|||+||+|+|++++||+++|+
T Consensus 81 ~~~i~~H~E~--~~~~~~~i~~ik~~g~k~GialnP~T~~~~~~~~l~~vD~VlvMsV~PG~~Gq~f~~~~~~KI~~l~~ 158 (201)
T PF00834_consen 81 ADYITFHAEA--TEDPKETIKYIKEAGIKAGIALNPETPVEELEPYLDQVDMVLVMSVEPGFGGQKFIPEVLEKIRELRK 158 (201)
T ss_dssp -SEEEEEGGG--TTTHHHHHHHHHHTTSEEEEEE-TTS-GGGGTTTGCCSSEEEEESS-TTTSSB--HGGHHHHHHHHHH
T ss_pred CCEEEEcccc--hhCHHHHHHHHHHhCCCEEEEEECCCCchHHHHHhhhcCEEEEEEecCCCCcccccHHHHHHHHHHHH
Confidence 9999999995 57899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCeEEEeCCCChhhhhhccc
Q 025927 219 MCLEKGVNPWIEVDGGVGPKNAYKVPN 245 (246)
Q Consensus 219 l~~~~~~~~~I~VDGGI~~e~i~~l~~ 245 (246)
+++++|+++.|+||||||.+|++++.+
T Consensus 159 ~~~~~~~~~~I~vDGGI~~~~~~~~~~ 185 (201)
T PF00834_consen 159 LIPENGLDFEIEVDGGINEENIKQLVE 185 (201)
T ss_dssp HHHHHTCGSEEEEESSESTTTHHHHHH
T ss_pred HHHhcCCceEEEEECCCCHHHHHHHHH
Confidence 999999999999999999999998864
No 6
>PRK08005 epimerase; Validated
Probab=100.00 E-value=1.4e-69 Score=475.91 Aligned_cols=182 Identities=30% Similarity=0.442 Sum_probs=176.0
Q ss_pred cEEeeeecccChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhc
Q 025927 58 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKA 137 (246)
Q Consensus 58 ~~IsPSIl~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~a 137 (246)
++|+|||||+|+.+|++++++++++|+||+|+||||||||||++|||+++++||++|++|+||||||+||++|++.|+++
T Consensus 1 ~~i~pSil~ad~~~l~~el~~l~~~g~d~lHiDvMDG~FVPN~tfG~~~i~~l~~~t~~~~DvHLMv~~P~~~i~~~~~~ 80 (210)
T PRK08005 1 MILHPSLASADPLRYAEALTALHDAPLGSLHLDIEDTSFINNITFGMKTIQAVAQQTRHPLSFHLMVSSPQRWLPWLAAI 80 (210)
T ss_pred CEEEeehhhCCHHHHHHHHHHHHHCCCCEEEEeccCCCcCCccccCHHHHHHHHhcCCCCeEEEeccCCHHHHHHHHHHh
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEccCCcccccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhhhcceEEEEeecCCCCCCcccHHHHHHHHHHH
Q 025927 138 GADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLR 217 (246)
Q Consensus 138 gad~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~~vD~VLvMsV~PGfgGQ~F~~~~l~KI~~lr 217 (246)
|||+||||+|+ +.++.++|++||++|+|+||||||+||++.+++||+++|+||+|||+|||+||+|+|++++||+++|
T Consensus 81 gad~It~H~Ea--~~~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~~vD~VlvMsV~PGf~GQ~f~~~~~~KI~~l~ 158 (210)
T PRK08005 81 RPGWIFIHAES--VQNPSEILADIRAIGAKAGLALNPATPLLPYRYLALQLDALMIMTSEPDGRGQQFIAAMCEKVSQSR 158 (210)
T ss_pred CCCEEEEcccC--ccCHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHhcCEEEEEEecCCCccceecHHHHHHHHHHH
Confidence 99999999996 5789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCeEEEeCCCChhhhhhccc
Q 025927 218 RMCLEKGVNPWIEVDGGVGPKNAYKVPN 245 (246)
Q Consensus 218 ~l~~~~~~~~~I~VDGGI~~e~i~~l~~ 245 (246)
+++++. .||||||||.+|++++++
T Consensus 159 ~~~~~~----~I~VDGGI~~~~i~~l~~ 182 (210)
T PRK08005 159 EHFPAA----ECWADGGITLRAARLLAA 182 (210)
T ss_pred HhcccC----CEEEECCCCHHHHHHHHH
Confidence 998763 599999999999999865
No 7
>PRK14057 epimerase; Provisional
Probab=100.00 E-value=1.2e-68 Score=481.02 Aligned_cols=185 Identities=28% Similarity=0.460 Sum_probs=179.4
Q ss_pred CcEEeeeecccChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHh
Q 025927 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIK 136 (246)
Q Consensus 57 ~~~IsPSIl~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~ 136 (246)
...|+|||||+|+.+|++++++++++|+||+|+||||||||||++|||+++++||+ ++|+||||||+||++|++.|++
T Consensus 19 ~~~IspSil~aD~~~L~~el~~l~~~g~d~lHiDVMDG~FVPNitfGp~~i~~i~~--~~p~DvHLMV~~P~~~i~~~~~ 96 (254)
T PRK14057 19 SYPLSVGILAGQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQFTVGPWAVGQLPQ--TFIKDVHLMVADQWTAAQACVK 96 (254)
T ss_pred CCceEeehhhcCHHHHHHHHHHHHHCCCCEEEEeccCCccCCccccCHHHHHHhcc--CCCeeEEeeeCCHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999987 6999999999999999999999
Q ss_pred cCCCEEEEccCCcccccHHHHHHHHHHcCC---------cEEEEEcCCCChHHHHHhhhhcceEEEEeecCCCCCCcccH
Q 025927 137 AGADIVSVHCEQSSTIHLHRTLNQIKDLGA---------KAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIE 207 (246)
Q Consensus 137 agad~It~H~E~~~~~~~~~~i~~Ik~~G~---------k~GlAlnP~Tpve~l~~~l~~vD~VLvMsV~PGfgGQ~F~~ 207 (246)
+|||+||||+|+ +.++.++|++||++|+ ++||||||+||++.+++||+++|+||+|||+||||||+|+|
T Consensus 97 aGad~It~H~Ea--~~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~~vD~VLvMtV~PGfgGQ~Fi~ 174 (254)
T PRK14057 97 AGAHCITLQAEG--DIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILSDVEVIQLLAVNPGYGSKMRSS 174 (254)
T ss_pred hCCCEEEEeecc--ccCHHHHHHHHHHcCCCcccccccceeEEEECCCCCHHHHHHHHHhCCEEEEEEECCCCCchhccH
Confidence 999999999996 5789999999999998 59999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCeEEEeCCCChhhhhhccc
Q 025927 208 SQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVPN 245 (246)
Q Consensus 208 ~~l~KI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~l~~ 245 (246)
++++||+++|++++++|+++.||||||||.+|++++++
T Consensus 175 ~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~~l~~ 212 (254)
T PRK14057 175 DLHERVAQLLCLLGDKREGKIIVIDGSLTQDQLPSLIA 212 (254)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999865
No 8
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=100.00 E-value=2.2e-68 Score=470.62 Aligned_cols=185 Identities=49% Similarity=0.831 Sum_probs=180.2
Q ss_pred EEeeeecccChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccC-CCCCeeEEEeccCcccchHHHHhc
Q 025927 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKA 137 (246)
Q Consensus 59 ~IsPSIl~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~-t~~plDvHLMV~~P~~~i~~~~~a 137 (246)
.|+|||||+|+.+|++++++++++|+||+|+||||||||||++|||++++++|++ |++|+||||||+||++|++.|+++
T Consensus 1 ~i~pSil~ad~~~l~~~i~~l~~~g~~~lH~DvmDG~Fvpn~tfg~~~i~~i~~~~~~~~~dvHLMv~~p~~~i~~~~~~ 80 (220)
T PRK08883 1 LIAPSILSADFARLGEDVEKVLAAGADVVHFDVMDNHYVPNLTFGAPICKALRDYGITAPIDVHLMVKPVDRIIPDFAKA 80 (220)
T ss_pred CcchhhhhcCHHHHHHHHHHHHHcCCCEEEEecccCcccCccccCHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHh
Confidence 4899999999999999999999999999999999999999999999999999998 799999999999999999999999
Q ss_pred CCCEEEEccCCcccccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhhhcceEEEEeecCCCCCCcccHHHHHHHHHHH
Q 025927 138 GADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLR 217 (246)
Q Consensus 138 gad~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~~vD~VLvMsV~PGfgGQ~F~~~~l~KI~~lr 217 (246)
|||+||||+|+ +.++.++|++||++|+|+||||||+||++.+++|++++|+||+|||+||||||+|+|.+++||+++|
T Consensus 81 gad~i~~H~Ea--~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~D~vlvMtV~PGfgGq~fi~~~lekI~~l~ 158 (220)
T PRK08883 81 GASMITFHVEA--SEHVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVDLILLMSVNPGFGGQSFIPHTLDKLRAVR 158 (220)
T ss_pred CCCEEEEcccC--cccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCeEEEEEecCCCCCceecHhHHHHHHHHH
Confidence 99999999996 5789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCeEEEeCCCChhhhhhccc
Q 025927 218 RMCLEKGVNPWIEVDGGVGPKNAYKVPN 245 (246)
Q Consensus 218 ~l~~~~~~~~~I~VDGGI~~e~i~~l~~ 245 (246)
++++++|+++.|+||||||.+|++++++
T Consensus 159 ~~~~~~~~~~~I~vdGGI~~eni~~l~~ 186 (220)
T PRK08883 159 KMIDESGRDIRLEIDGGVKVDNIREIAE 186 (220)
T ss_pred HHHHhcCCCeeEEEECCCCHHHHHHHHH
Confidence 9999999999999999999999999865
No 9
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.5e-67 Score=454.56 Aligned_cols=185 Identities=45% Similarity=0.731 Sum_probs=176.2
Q ss_pred CCCcEEeeeecccChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCC--CeeEEEeccCcccchH
Q 025927 55 KSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDL--PLDVHLMIVEPEQRVP 132 (246)
Q Consensus 55 ~~~~~IsPSIl~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~--plDvHLMV~~P~~~i~ 132 (246)
+-+.+|+||||++|++||++|++++..+|+||||+||||||||||+||||.+|++||++++. .||+||||++|++||+
T Consensus 2 ~~~~~I~PSIL~~dfanL~~e~~~~l~~GadwlHlDVMDg~FVpNiT~G~pvV~slR~~~~~~~ffD~HmMV~~Peq~V~ 81 (224)
T KOG3111|consen 2 MVKPKIAPSILSSDFANLAAECKKMLDAGADWLHLDVMDGHFVPNITFGPPVVESLRKHTGADPFFDVHMMVENPEQWVD 81 (224)
T ss_pred CcCceechhhhccchHHHHHHHHHHHHcCCCeEEEeeecccccCCcccchHHHHHHHhccCCCcceeEEEeecCHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999877 4999999999999999
Q ss_pred HHHhcCCCEEEEccCCcccccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhhhcceEEEEeecCCCCCCcccHHHHHH
Q 025927 133 DFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKK 212 (246)
Q Consensus 133 ~~~~agad~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~~vD~VLvMsV~PGfgGQ~F~~~~l~K 212 (246)
.++++||+.+|||+|+ ++++.+++++||+.|+|+|+||||+||++.++++++.+|+||||||+||||||+|+|+++.|
T Consensus 82 ~~a~agas~~tfH~E~--~q~~~~lv~~ir~~Gmk~G~alkPgT~Ve~~~~~~~~~D~vLvMtVePGFGGQkFme~mm~K 159 (224)
T KOG3111|consen 82 QMAKAGASLFTFHYEA--TQKPAELVEKIREKGMKVGLALKPGTPVEDLEPLAEHVDMVLVMTVEPGFGGQKFMEDMMPK 159 (224)
T ss_pred HHHhcCcceEEEEEee--ccCHHHHHHHHHHcCCeeeEEeCCCCcHHHHHHhhccccEEEEEEecCCCchhhhHHHHHHH
Confidence 9999999999999996 57799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCeEEEeCCCChhhhhhccc
Q 025927 213 ISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVPN 245 (246)
Q Consensus 213 I~~lr~l~~~~~~~~~I~VDGGI~~e~i~~l~~ 245 (246)
++.||+.++ +..||||||++.+|+..+.|
T Consensus 160 V~~lR~kyp----~l~ievDGGv~~~ti~~~a~ 188 (224)
T KOG3111|consen 160 VEWLREKYP----NLDIEVDGGVGPSTIDKAAE 188 (224)
T ss_pred HHHHHHhCC----CceEEecCCcCcchHHHHHH
Confidence 999996543 57899999999999998865
No 10
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=100.00 E-value=1.1e-56 Score=397.11 Aligned_cols=183 Identities=42% Similarity=0.737 Sum_probs=174.5
Q ss_pred CcEEeeeecccChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCC-CCCeeEEEeccCcccchHHHH
Q 025927 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVT-DLPLDVHLMIVEPEQRVPDFI 135 (246)
Q Consensus 57 ~~~IsPSIl~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t-~~plDvHLMV~~P~~~i~~~~ 135 (246)
+.+|+|||||+|+.+|++++++++++|+||+|+|||||+||||++||++++++||+++ ++++|+|||+.+|++|++.|.
T Consensus 6 ~~~i~pSi~~~d~~~l~~~~~~l~~~~~~~~H~DimDg~fvpn~~~G~~~v~~lr~~~~~~~lDvHLm~~~p~~~i~~~~ 85 (228)
T PTZ00170 6 KAIIAPSILAADFSKLADEAQDVLSGGADWLHVDVMDGHFVPNLSFGPPVVKSLRKHLPNTFLDCHLMVSNPEKWVDDFA 85 (228)
T ss_pred CCEEehhHhhcCHHHHHHHHHHHHHcCCCEEEEecccCccCCCcCcCHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHH
Confidence 4679999999999999999999999999999999999999999999999999999987 899999999999999999999
Q ss_pred hcCCCEEEEccCCccccc-HHHHHHHHHHcCCcEEEEEcCCCChHHHHHhh--hhcceEEEEeecCCCCCCcccHHHHHH
Q 025927 136 KAGADIVSVHCEQSSTIH-LHRTLNQIKDLGAKAGVVLNPATSLSAIECVL--DVVDLVLIMSVNPGFGGQSFIESQVKK 212 (246)
Q Consensus 136 ~agad~It~H~E~~~~~~-~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l--~~vD~VLvMsV~PGfgGQ~F~~~~l~K 212 (246)
++|+|+||||+|+ ..+ +.++++.||++|+++||++||.||++.+++|+ +.+|+|++|+|+|||+||+|.+.+++|
T Consensus 86 ~~Gad~itvH~ea--~~~~~~~~l~~ik~~G~~~gval~p~t~~e~l~~~l~~~~vD~Vl~m~v~pG~~gq~~~~~~~~k 163 (228)
T PTZ00170 86 KAGASQFTFHIEA--TEDDPKAVARKIREAGMKVGVAIKPKTPVEVLFPLIDTDLVDMVLVMTVEPGFGGQSFMHDMMPK 163 (228)
T ss_pred HcCCCEEEEeccC--CchHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHccchhhhHHhhhcccCCCCcEecHHHHHH
Confidence 9999999999996 345 88999999999999999999999999999999 899999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCeEEEeCCCChhhhhhccc
Q 025927 213 ISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVPN 245 (246)
Q Consensus 213 I~~lr~l~~~~~~~~~I~VDGGI~~e~i~~l~~ 245 (246)
|+++|+++++ +.|+||||||++|++.+++
T Consensus 164 i~~~~~~~~~----~~I~VdGGI~~~ti~~~~~ 192 (228)
T PTZ00170 164 VRELRKRYPH----LNIQVDGGINLETIDIAAD 192 (228)
T ss_pred HHHHHHhccc----CeEEECCCCCHHHHHHHHH
Confidence 9999998753 6799999999999998864
No 11
>PLN02334 ribulose-phosphate 3-epimerase
Probab=100.00 E-value=3.7e-46 Score=328.43 Aligned_cols=191 Identities=62% Similarity=0.955 Sum_probs=179.9
Q ss_pred ccCCCCCcEEeeeecccChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccc
Q 025927 51 DKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQR 130 (246)
Q Consensus 51 ~~~~~~~~~IsPSIl~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~ 130 (246)
|+||+++..|+||++|+|+.++++++++++++|++|+|+|+|||+|+||++|||+.+++||++|+.++|+||||.+|.+|
T Consensus 1 ~~~~~~~~~i~~s~~~~~~~~l~~~l~~~~~~g~~~ihld~~d~~f~~~~~~g~~~~~~l~~~~~~~~~vhlmv~~p~d~ 80 (229)
T PLN02334 1 DKFSKNDAIIAPSILSADFANLAEEAKRVLDAGADWLHVDVMDGHFVPNLTIGPPVVKALRKHTDAPLDCHLMVTNPEDY 80 (229)
T ss_pred CCcccCCceEEeehhhcCHHHHHHHHHHHHHcCCCEEEEecccCCcCCccccCHHHHHHHHhcCCCcEEEEeccCCHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhcCCCEEEEccCCcccccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhhh--cceEEEEeecCCCCCCcccHH
Q 025927 131 VPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV--VDLVLIMSVNPGFGGQSFIES 208 (246)
Q Consensus 131 i~~~~~agad~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~~--vD~VLvMsV~PGfgGQ~F~~~ 208 (246)
++.+.++|||+|+||+|......+.+.++.+++.|+++|++++|+||++.++++++. +|+|++|+|.||++||+|.+.
T Consensus 81 ~~~~~~~gad~v~vH~~q~~~d~~~~~~~~i~~~g~~iGls~~~~t~~~~~~~~~~~~~~Dyi~~~~v~pg~~~~~~~~~ 160 (229)
T PLN02334 81 VPDFAKAGASIFTFHIEQASTIHLHRLIQQIKSAGMKAGVVLNPGTPVEAVEPVVEKGLVDMVLVMSVEPGFGGQSFIPS 160 (229)
T ss_pred HHHHHHcCCCEEEEeeccccchhHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhccCCCEEEEEEEecCCCccccCHH
Confidence 999999999999999992014578899999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEeCCCChhhhhhccc
Q 025927 209 QVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVPN 245 (246)
Q Consensus 209 ~l~KI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~l~~ 245 (246)
.++|++++|+++.+ ..|+||||||.+|++++.+
T Consensus 161 ~~~~i~~~~~~~~~----~~I~a~GGI~~e~i~~l~~ 193 (229)
T PLN02334 161 MMDKVRALRKKYPE----LDIEVDGGVGPSTIDKAAE 193 (229)
T ss_pred HHHHHHHHHHhCCC----CcEEEeCCCCHHHHHHHHH
Confidence 99999999988643 4699999999999998865
No 12
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=100.00 E-value=1.4e-37 Score=266.26 Aligned_cols=184 Identities=62% Similarity=0.998 Sum_probs=173.2
Q ss_pred EeeeecccChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCC
Q 025927 60 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGA 139 (246)
Q Consensus 60 IsPSIl~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~aga 139 (246)
|+|||+|+|+.++.++++.+.++|+|++|+|||||+|+||++++++.+++||+.++.++++|+|+.+|.+|++.+.++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~~~~~ga 80 (210)
T TIGR01163 1 IAPSILSADFARLGEEVKAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRKYTDLPIDVHLMVENPDRYIEDFAEAGA 80 (210)
T ss_pred CcchhhcCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCC
Confidence 68999999999999999999999999999999999999999999999999998888899999999999999999999999
Q ss_pred CEEEEccCCcccccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhhhcceEEEEeecCCCCCCcccHHHHHHHHHHHHH
Q 025927 140 DIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRM 219 (246)
Q Consensus 140 d~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~~vD~VLvMsV~PGfgGQ~F~~~~l~KI~~lr~l 219 (246)
|.|++|.|. .++..+.++.+|+.|++.|+.++|.|+.+.++.+...+|+|++|++.||.+||+|.+..++++++++++
T Consensus 81 dgv~vh~~~--~~~~~~~~~~~~~~g~~~~~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~ 158 (210)
T TIGR01163 81 DIITVHPEA--SEHIHRLLQLIKDLGAKAGIVLNPATPLEFLEYVLPDVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKM 158 (210)
T ss_pred CEEEEccCC--chhHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhhCCEEEEEEEcCCCCcccccHHHHHHHHHHHHH
Confidence 999999995 456778899999999999999999999999999988899999999999999999999999999999999
Q ss_pred HHhcCCCCeEEEeCCCChhhhhhccc
Q 025927 220 CLEKGVNPWIEVDGGVGPKNAYKVPN 245 (246)
Q Consensus 220 ~~~~~~~~~I~VDGGI~~e~i~~l~~ 245 (246)
.++.+.++.|.++||||.+|++++.+
T Consensus 159 ~~~~~~~~~i~v~GGI~~env~~l~~ 184 (210)
T TIGR01163 159 IDENGLSILIEVDGGVNDDNARELAE 184 (210)
T ss_pred HHhcCCCceEEEECCcCHHHHHHHHH
Confidence 88766666799999999999988753
No 13
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=100.00 E-value=1.9e-36 Score=261.82 Aligned_cols=187 Identities=60% Similarity=1.003 Sum_probs=174.1
Q ss_pred CcEEeeeecccChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHh
Q 025927 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIK 136 (246)
Q Consensus 57 ~~~IsPSIl~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~ 136 (246)
.+.|+|||+++|+.++.++++++.++|++++|+|+|||.|+||++++++.++++++.++.++++|||+.+|.++++.+.+
T Consensus 3 ~~~~~~s~~~~~~~~~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~v~d~~~~i~~~~~ 82 (220)
T PRK05581 3 MVLIAPSILSADFARLGEEVKAVEAAGADWIHVDVMDGHFVPNLTIGPPVVEAIRKVTKLPLDVHLMVENPDRYVPDFAK 82 (220)
T ss_pred CcEEEcchhcCCHHHHHHHHHHHHHcCCCEEEEeCccCCcCCCcCcCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHH
Confidence 34699999999999999999999999999999999999999999999999999998766889999999999999999999
Q ss_pred cCCCEEEEccCCcccccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhhhcceEEEEeecCCCCCCcccHHHHHHHHHH
Q 025927 137 AGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDL 216 (246)
Q Consensus 137 agad~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~~vD~VLvMsV~PGfgGQ~F~~~~l~KI~~l 216 (246)
+|+|.+++|.+. .+.+.+.++.+|+.|+++|+.++|.|+.+.++.+...+|+|++|++.||.+||.|.+..+++++++
T Consensus 83 ~g~d~v~vh~~~--~~~~~~~~~~~~~~~~~~g~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~ 160 (220)
T PRK05581 83 AGADIITFHVEA--SEHIHRLLQLIKSAGIKAGLVLNPATPLEPLEDVLDLLDLVLLMSVNPGFGGQKFIPEVLEKIREL 160 (220)
T ss_pred cCCCEEEEeecc--chhHHHHHHHHHHcCCEEEEEECCCCCHHHHHHHHhhCCEEEEEEECCCCCcccccHHHHHHHHHH
Confidence 999999999995 356778899999999999999999999999999988899999999999999999999999999999
Q ss_pred HHHHHhcCCCCeEEEeCCCChhhhhhccc
Q 025927 217 RRMCLEKGVNPWIEVDGGVGPKNAYKVPN 245 (246)
Q Consensus 217 r~l~~~~~~~~~I~VDGGI~~e~i~~l~~ 245 (246)
+++.+.+++++.|.+|||||.+|++++.+
T Consensus 161 ~~~~~~~~~~~~i~v~GGI~~~nv~~l~~ 189 (220)
T PRK05581 161 RKLIDERGLDILIEVDGGINADNIKECAE 189 (220)
T ss_pred HHHHHhcCCCceEEEECCCCHHHHHHHHH
Confidence 99887655556799999999999998863
No 14
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=100.00 E-value=2.8e-33 Score=239.10 Aligned_cols=185 Identities=58% Similarity=0.924 Sum_probs=173.3
Q ss_pred EEeeeecccChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcC
Q 025927 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAG 138 (246)
Q Consensus 59 ~IsPSIl~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~ag 138 (246)
+|+|||+|.|+.++.++++.+.++|++++|+|+|||.|+||..+|++.+++|++.++.++++|||+.||.++++.+.++|
T Consensus 1 ~~~~~~~~~d~~~~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~~~d~~~~~~~~~~~g 80 (211)
T cd00429 1 KIAPSILSADFANLGEELKRLEEAGADWIHIDVMDGHFVPNLTFGPPVVKALRKHTDLPLDVHLMVENPERYIEAFAKAG 80 (211)
T ss_pred CceeeeecCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCccccCHHHHHHHHhhCCCcEEEEeeeCCHHHHHHHHHHcC
Confidence 48999999999999999999999999999999999999999999999999999877789999999999999999999999
Q ss_pred CCEEEEccCCcccccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhhhcceEEEEeecCCCCCCcccHHHHHHHHHHHH
Q 025927 139 ADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRR 218 (246)
Q Consensus 139 ad~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~~vD~VLvMsV~PGfgGQ~F~~~~l~KI~~lr~ 218 (246)
+|.+++|.+. .+...+.++.+++.|+++|+.++|.|+.+.++.+...+|++++|++.||.+|+.|.+..+++++++|+
T Consensus 81 ~dgv~vh~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~ 158 (211)
T cd00429 81 ADIITFHAEA--TDHLHRTIQLIKELGMKAGVALNPGTPVEVLEPYLDEVDLVLVMSVNPGFGGQKFIPEVLEKIRKLRE 158 (211)
T ss_pred CCEEEECccc--hhhHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHhhCCEEEEEEECCCCCCcccCHHHHHHHHHHHH
Confidence 9999999985 35667889999999999999999999999999998889999999999999999999999999999999
Q ss_pred HHHhcCCCCeEEEeCCCChhhhhhccc
Q 025927 219 MCLEKGVNPWIEVDGGVGPKNAYKVPN 245 (246)
Q Consensus 219 l~~~~~~~~~I~VDGGI~~e~i~~l~~ 245 (246)
+..+++.+..+.++|||+.+|++++.+
T Consensus 159 ~~~~~~~~~pi~v~GGI~~env~~~~~ 185 (211)
T cd00429 159 LIPENNLNLLIEVDGGINLETIPLLAE 185 (211)
T ss_pred HHHhcCCCeEEEEECCCCHHHHHHHHH
Confidence 998777777899999999999998764
No 15
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=99.97 E-value=5e-31 Score=234.94 Aligned_cols=173 Identities=21% Similarity=0.251 Sum_probs=154.1
Q ss_pred ecccCh--hhHHHHHHHHHHcCCCEEEee------eccCcccCCCC-----------CCHHHHhhcccCCCCCeeEEEec
Q 025927 64 ILSANF--AKLGEQVKAVELAGCDWIHVD------VMDGRFVPNIT-----------IGPLVVDALRPVTDLPLDVHLMI 124 (246)
Q Consensus 64 Il~aD~--~~l~~~i~~l~~~g~d~lHiD------IMDG~FVpN~t-----------fgp~~I~~ir~~t~~plDvHLMV 124 (246)
+.+.++ .++.+.++.++++|+|++|+| +|||+|++|.+ +++++++++|+.+++| +|||+
T Consensus 6 ~~~G~P~~~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~p--v~lm~ 83 (242)
T cd04724 6 ITAGDPDLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIP--IVLMG 83 (242)
T ss_pred EeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCC--EEEEE
Confidence 444444 478899999999999999999 99999999977 9999999999877777 79999
Q ss_pred c-Cc------ccchHHHHhcCCCEEEEccCCcccccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhh-hcceEEEEee
Q 025927 125 V-EP------EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSV 196 (246)
Q Consensus 125 ~-~P------~~~i~~~~~agad~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~-~vD~VLvMsV 196 (246)
+ || ++|++.++++|++.+++|-+. .++..++++.+|++|++++++++|.||.+.++++++ ..|+|++||+
T Consensus 84 y~n~~~~~G~~~fi~~~~~aG~~giiipDl~--~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy~~s~ 161 (242)
T cd04724 84 YYNPILQYGLERFLRDAKEAGVDGLIIPDLP--PEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIYYVSR 161 (242)
T ss_pred ecCHHHHhCHHHHHHHHHHCCCcEEEECCCC--HHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCEEEEeC
Confidence 9 98 899999999999999994332 135778999999999999999999999999999999 8999999999
Q ss_pred cCCCCCCc-ccHHHHHHHHHHHHHHHhcCCCCeEEEeCCCC-hhhhhhccc
Q 025927 197 NPGFGGQS-FIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVPN 245 (246)
Q Consensus 197 ~PGfgGQ~-F~~~~l~KI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~l~~ 245 (246)
+||+|||. |.+.+.++|+++|++. +..|+|||||+ .++++++++
T Consensus 162 ~g~tG~~~~~~~~~~~~i~~lr~~~-----~~pI~vggGI~~~e~~~~~~~ 207 (242)
T cd04724 162 TGVTGARTELPDDLKELIKRIRKYT-----DLPIAVGFGISTPEQAAEVAK 207 (242)
T ss_pred CCCCCCccCCChhHHHHHHHHHhcC-----CCcEEEEccCCCHHHHHHHHc
Confidence 99999998 9999999999999864 46799999999 559988765
No 16
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=99.92 E-value=5.7e-24 Score=189.57 Aligned_cols=173 Identities=17% Similarity=0.185 Sum_probs=145.2
Q ss_pred EEeeeecccCh--hhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCH---------------HHHhhcccCCCCCeeEE
Q 025927 59 IVSPSILSANF--AKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGP---------------LVVDALRPVTDLPLDVH 121 (246)
Q Consensus 59 ~IsPSIl~aD~--~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp---------------~~I~~ir~~t~~plDvH 121 (246)
.+-|=+.+.++ ....+-++.++++ +|.+=+.+ .|-.-..=|| ++++++|+.+++|+ |
T Consensus 5 ~~i~y~~~G~p~~~~~~~~~~~l~~~-ad~iElgi---p~sdp~adG~~i~~~~~~a~~~g~~~~v~~vr~~~~~Pl--~ 78 (244)
T PRK13125 5 GLVVYLTAGYPNVESFKEFIIGLVEL-VDILELGI---PPKYPKYDGPVIRKSHRKVKGLDIWPLLEEVRKDVSVPI--I 78 (244)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHhh-CCEEEECC---CCCCCCCCCHHHHHHHHHHHHcCcHHHHHHHhccCCCCE--E
Confidence 35566666653 4566777888877 99998876 2311122233 58899998888997 8
Q ss_pred Ee------ccCcccchHHHHhcCCCEEEEc---cCCcccccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhhhcceEE
Q 025927 122 LM------IVEPEQRVPDFIKAGADIVSVH---CEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVL 192 (246)
Q Consensus 122 LM------V~~P~~~i~~~~~agad~It~H---~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~~vD~VL 192 (246)
|| +.+|++|++.+.++|+|.+++| +|+ .+++.++++.+|++|+++|++++|.||.+.++++++..|.++
T Consensus 79 lM~y~n~~~~~~~~~i~~~~~~Gadgvii~dlp~e~--~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l 156 (244)
T PRK13125 79 LMTYLEDYVDSLDNFLNMARDVGADGVLFPDLLIDY--PDDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPLFI 156 (244)
T ss_pred EEEecchhhhCHHHHHHHHHHcCCCEEEECCCCCCc--HHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCEE
Confidence 88 8899999999999999999999 785 467889999999999999999999999999999999999999
Q ss_pred EEeecCCCCCCcccHHHHHHHHHHHHHHHhcCCCCeEEEeCCC-Chhhhhhcc
Q 025927 193 IMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGV-GPKNAYKVP 244 (246)
Q Consensus 193 vMsV~PGfgGQ~F~~~~l~KI~~lr~l~~~~~~~~~I~VDGGI-~~e~i~~l~ 244 (246)
+|||+|||| |+|.+.+.+|++++|++.++. .|+||||| |.++++++.
T Consensus 157 ~msv~~~~g-~~~~~~~~~~i~~lr~~~~~~----~i~v~gGI~~~e~i~~~~ 204 (244)
T PRK13125 157 YYGLRPATG-VPLPVSVERNIKRVRNLVGNK----YLVVGFGLDSPEDARDAL 204 (244)
T ss_pred EEEeCCCCC-CCchHHHHHHHHHHHHhcCCC----CEEEeCCcCCHHHHHHHH
Confidence 999999995 589999999999999997643 49999999 999999864
No 17
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=99.91 E-value=7e-26 Score=196.77 Aligned_cols=172 Identities=17% Similarity=0.178 Sum_probs=139.3
Q ss_pred cccChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEe--ccCcccchHHHHhcCCCEE
Q 025927 65 LSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLM--IVEPEQRVPDFIKAGADIV 142 (246)
Q Consensus 65 l~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLM--V~~P~~~i~~~~~agad~I 142 (246)
+++|...+++-++.+++.+ +. +|+--=++-==.+||++++++||+.+.+++|+|+| ..+|..+++.+.++|||++
T Consensus 8 ~alD~~~~~~~~~~~~~~~-~~--~~~vk~g~~l~~~~G~~~v~~ir~~~~i~~D~k~~di~~~~~~~~~~~~~~gad~v 84 (215)
T PRK13813 8 LALDVTDRERALKIAEELD-DY--VDAIKVGWPLVLASGLGIIEELKRYAPVIADLKVADIPNTNRLICEAVFEAGAWGI 84 (215)
T ss_pred EEeCCCCHHHHHHHHHhcc-cc--CCEEEEcHHHHHhhCHHHHHHHHhcCCEEEEeeccccHHHHHHHHHHHHhCCCCEE
Confidence 5679999988888887763 32 23222111001479999999999998999999996 4566677799999999999
Q ss_pred EEccCCcccccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhhhcceEEEEeecCCCCCCcccHHHHHHHHHHHHHHHh
Q 025927 143 SVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLE 222 (246)
Q Consensus 143 t~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~~vD~VLvMsV~PGfgGQ~F~~~~l~KI~~lr~l~~~ 222 (246)
|||+|+. ...+.++++.+|+.|+++|++++|.+ ++.++++++++|.++.|+++|||+||+|.+..++||+++|+.+++
T Consensus 85 tvh~e~g-~~~l~~~i~~~~~~g~~~~v~~~~~~-~~~~~~~~~~~~~v~~m~~e~G~~g~~~~~~~~~~i~~l~~~~~~ 162 (215)
T PRK13813 85 IVHGFTG-RDSLKAVVEAAAESGGKVFVVVEMSH-PGALEFIQPHADKLAKLAQEAGAFGVVAPATRPERVRYIRSRLGD 162 (215)
T ss_pred EEcCcCC-HHHHHHHHHHHHhcCCeEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhCCCeEEECCCcchhHHHHHHhcCC
Confidence 9999963 34588999999999999999999986 677778888999999999999999999999999999999988754
Q ss_pred cCCCCeEEEeCCCChhh--hhhccc
Q 025927 223 KGVNPWIEVDGGVGPKN--AYKVPN 245 (246)
Q Consensus 223 ~~~~~~I~VDGGI~~e~--i~~l~~ 245 (246)
++.| |||||+.++ ++++.+
T Consensus 163 ---~~~i-vdgGI~~~g~~~~~~~~ 183 (215)
T PRK13813 163 ---ELKI-ISPGIGAQGGKAADAIK 183 (215)
T ss_pred ---CcEE-EeCCcCCCCCCHHHHHH
Confidence 4678 999999985 766543
No 18
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=99.89 E-value=3.6e-23 Score=182.15 Aligned_cols=171 Identities=16% Similarity=0.218 Sum_probs=140.7
Q ss_pred ecccChhhHHHHHHHHHHcCCCEEEeeeccCcccCC-CCCCHHHHhhcccC-CCCCeeEEEeccCcccchH-HHHhcCCC
Q 025927 64 ILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPN-ITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVP-DFIKAGAD 140 (246)
Q Consensus 64 Il~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN-~tfgp~~I~~ir~~-t~~plDvHLMV~~P~~~i~-~~~~agad 140 (246)
+++.|..++++.++.+++.+ + |+|+.-==. |- +++|+..|++||+. +++++++|||+.||-+++. .+.++|+|
T Consensus 7 ~vALD~~~~~~a~~l~~~l~-~--~v~~~kvG~-~l~~~~G~~~i~~lk~~~~~~~v~~DLK~~Di~~~v~~~~~~~Gad 82 (216)
T PRK13306 7 QIALDNQDLESAIEDAKKVA-E--EVDIIEVGT-ILLLAEGMKAVRVLRALYPDKIIVADTKIADAGKILAKMAFEAGAD 82 (216)
T ss_pred EEEecCCCHHHHHHHHHHcc-c--cCCEEEECh-HHHHHhCHHHHHHHHHHCCCCEEEEEEeecCCcHHHHHHHHHCCCC
Confidence 44568888887777776542 2 222211001 22 58999999999986 7999999999999999998 78899999
Q ss_pred EEEEccCCcccccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhh--hcceEEEEeecCCCCCCcccHHHHHHHHHHHH
Q 025927 141 IVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD--VVDLVLIMSVNPGFGGQSFIESQVKKISDLRR 218 (246)
Q Consensus 141 ~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~--~vD~VLvMsV~PGfgGQ~F~~~~l~KI~~lr~ 218 (246)
++|+|.|+ ...-+.++++.+++.|+++|++++|.|+.+.++++++ ..|+|+.|+++|||+||.|.|..++||+++++
T Consensus 83 ~vTvH~~a-~~~~i~~~~~~~~~~g~~~~V~llts~~~~~l~~~~~~~~~~~vl~~a~~~~~~G~v~s~~~~~~ir~~~~ 161 (216)
T PRK13306 83 WVTVICAA-HIPTIKAALKVAKEFNGEIQIELYGNWTWEQAQQWRDAGISQVIYHRSRDAQLAGVAWGEKDLNKVKKLSD 161 (216)
T ss_pred EEEEeCCC-CHHHHHHHHHHHHHcCCEEEEEECCCCCHHHHHHHHcCChhhhhhhhhhhhhhcCCCCCHHHHHHHHHHhc
Confidence 99999996 2333788999999999999999999999999998777 78999999999999999999999999998865
Q ss_pred HHHhcCCCCeEEEeCCCChhhhhhccc
Q 025927 219 MCLEKGVNPWIEVDGGVGPKNAYKVPN 245 (246)
Q Consensus 219 l~~~~~~~~~I~VDGGI~~e~i~~l~~ 245 (246)
+ ++.|+|||||++++++.+.+
T Consensus 162 ----~--~~~i~V~gGI~~~~~~~~~~ 182 (216)
T PRK13306 162 ----M--GFKVSVTGGLVVEDLKLFKG 182 (216)
T ss_pred ----C--CCeEEEcCCCCHhhHHHHhc
Confidence 2 45699999999999987644
No 19
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=99.89 E-value=6.7e-23 Score=194.66 Aligned_cols=166 Identities=18% Similarity=0.243 Sum_probs=139.0
Q ss_pred ecccChhhHHHHHHHHHHcC---CCEEEeeeccCcccCC-CCCCHHHHhhcccC-CCCCeeEEEeccCcccc-hHHHHhc
Q 025927 64 ILSANFAKLGEQVKAVELAG---CDWIHVDVMDGRFVPN-ITIGPLVVDALRPV-TDLPLDVHLMIVEPEQR-VPDFIKA 137 (246)
Q Consensus 64 Il~aD~~~l~~~i~~l~~~g---~d~lHiDIMDG~FVpN-~tfgp~~I~~ir~~-t~~plDvHLMV~~P~~~-i~~~~~a 137 (246)
+++.|..++++.++.+++.+ .+|+ -| |. |- +.||+++|++||+. ++.++++|||+.||.+| ++.+.++
T Consensus 176 ~vALD~~~~~~A~~i~~~l~~~~~~~i--Kv--G~--~L~~~~G~~iVk~Lr~~~~~~~I~~DLK~~Di~~~vv~~~a~a 249 (391)
T PRK13307 176 QVALDLPDLEEVERVLSQLPKSDHIII--EA--GT--PLIKKFGLEVISKIREVRPDAFIVADLKTLDTGNLEARMAADA 249 (391)
T ss_pred EEecCCCCHHHHHHHHHhcccccceEE--EE--CH--HHHHHhCHHHHHHHHHhCCCCeEEEEecccChhhHHHHHHHhc
Confidence 34569999988888777663 1221 11 21 22 58999999999997 78999999999999999 8899999
Q ss_pred CCCEEEEccCCcccccHHHHHHHHHHcCCcEEE-EEcCCCChHHHHHhhhhcceEEEEe-ecCCCCCCcccHHHHHHHHH
Q 025927 138 GADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGV-VLNPATSLSAIECVLDVVDLVLIMS-VNPGFGGQSFIESQVKKISD 215 (246)
Q Consensus 138 gad~It~H~E~~~~~~~~~~i~~Ik~~G~k~Gl-AlnP~Tpve~l~~~l~~vD~VLvMs-V~PGfgGQ~F~~~~l~KI~~ 215 (246)
|+|++|+|.|+. ...+.+.++.+|+.|+++|+ ++||.||++.+++++..+|+|++|+ ++|| +| +..++||++
T Consensus 250 GAD~vTVH~ea~-~~ti~~ai~~akk~GikvgVD~lnp~tp~e~i~~l~~~vD~Vllht~vdp~--~~---~~~~~kI~~ 323 (391)
T PRK13307 250 TADAVVISGLAP-ISTIEKAIHEAQKTGIYSILDMLNVEDPVKLLESLKVKPDVVELHRGIDEE--GT---EHAWGNIKE 323 (391)
T ss_pred CCCEEEEeccCC-HHHHHHHHHHHHHcCCEEEEEEcCCCCHHHHHHHhhCCCCEEEEccccCCC--cc---cchHHHHHH
Confidence 999999999962 34688999999999999999 9999999999999988999999998 9999 44 346789998
Q ss_pred HHHHHHhcCCCCeEEEeCCCChhhhhhccc
Q 025927 216 LRRMCLEKGVNPWIEVDGGVGPKNAYKVPN 245 (246)
Q Consensus 216 lr~l~~~~~~~~~I~VDGGI~~e~i~~l~~ 245 (246)
+|++ +.++.|+|||||+.+|++++++
T Consensus 324 ikk~----~~~~~I~VdGGI~~eti~~l~~ 349 (391)
T PRK13307 324 IKKA----GGKILVAVAGGVRVENVEEALK 349 (391)
T ss_pred HHHh----CCCCcEEEECCcCHHHHHHHHH
Confidence 8887 4567899999999999988764
No 20
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=99.87 E-value=7.5e-22 Score=169.81 Aligned_cols=167 Identities=19% Similarity=0.242 Sum_probs=135.0
Q ss_pred cccChhhHHHHHHHHHHc--CCCEEEeeeccC-cccCCCCCCHHHHhhcccC-CCCCeeEEEeccCcccc-hHHHHhcCC
Q 025927 65 LSANFAKLGEQVKAVELA--GCDWIHVDVMDG-RFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQR-VPDFIKAGA 139 (246)
Q Consensus 65 l~aD~~~l~~~i~~l~~~--g~d~lHiDIMDG-~FVpN~tfgp~~I~~ir~~-t~~plDvHLMV~~P~~~-i~~~~~aga 139 (246)
.++|..++++.++.++.. |++++= .| ++ +..+|++.+++||+. ++..+.+|+++.+|.+| ++.+.++||
T Consensus 4 ~alD~~~~~~a~~~~~~l~~~v~~ie----v~~~l--~~~~g~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Ga 77 (206)
T TIGR03128 4 LALDLLDIEEALELAEKVADYVDIIE----IGTPL--IKNEGIEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGA 77 (206)
T ss_pred EEecCCCHHHHHHHHHHcccCeeEEE----eCCHH--HHHhCHHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcCC
Confidence 456777777666555543 444432 23 23 457899999999886 56667777777799999 999999999
Q ss_pred CEEEEccCCcccccHHHHHHHHHHcCCcEEEEE-cCCCChHHHHHhhh-hcceEEEEeecCCCCCCcccHHHHHHHHHHH
Q 025927 140 DIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL-NPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLR 217 (246)
Q Consensus 140 d~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAl-nP~Tpve~l~~~l~-~vD~VLvMsV~PGfgGQ~F~~~~l~KI~~lr 217 (246)
|+|++|+|+. ...+.++++.+|++|+++|+++ +|.|+++.+.+..+ .+|+| ++.|||+||+|.+..+++|++++
T Consensus 78 d~i~vh~~~~-~~~~~~~i~~~~~~g~~~~~~~~~~~t~~~~~~~~~~~g~d~v---~~~pg~~~~~~~~~~~~~i~~l~ 153 (206)
T TIGR03128 78 DIVTVLGVAD-DATIKGAVKAAKKHGKEVQVDLINVKDKVKRAKELKELGADYI---GVHTGLDEQAKGQNPFEDLQTIL 153 (206)
T ss_pred CEEEEeccCC-HHHHHHHHHHHHHcCCEEEEEecCCCChHHHHHHHHHcCCCEE---EEcCCcCcccCCCCCHHHHHHHH
Confidence 9999999962 2357899999999999999995 99999999998877 68876 77999999999999999999999
Q ss_pred HHHHhcCCCCeEEEeCCCChhhhhhccc
Q 025927 218 RMCLEKGVNPWIEVDGGVGPKNAYKVPN 245 (246)
Q Consensus 218 ~l~~~~~~~~~I~VDGGI~~e~i~~l~~ 245 (246)
+.++. +.|+||||||.+|++++.+
T Consensus 154 ~~~~~----~~i~v~GGI~~~n~~~~~~ 177 (206)
T TIGR03128 154 KLVKE----ARVAVAGGINLDTIPDVIK 177 (206)
T ss_pred HhcCC----CcEEEECCcCHHHHHHHHH
Confidence 98763 5799999999999988764
No 21
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=99.85 E-value=3.6e-20 Score=166.97 Aligned_cols=181 Identities=17% Similarity=0.184 Sum_probs=154.1
Q ss_pred CCcEEeeeecccChh--hHHHHHHHHHHcCCCEEEeee------ccCccc--------C-CCCC--CHHHHhhcccC-CC
Q 025927 56 SDIIVSPSILSANFA--KLGEQVKAVELAGCDWIHVDV------MDGRFV--------P-NITI--GPLVVDALRPV-TD 115 (246)
Q Consensus 56 ~~~~IsPSIl~aD~~--~l~~~i~~l~~~g~d~lHiDI------MDG~FV--------p-N~tf--gp~~I~~ir~~-t~ 115 (246)
++..+-|=+.+.|+. ...+.++.+.++|+|++-+-| .||-.. . .+++ ..++++++|+. ++
T Consensus 8 ~~~~li~y~~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~ 87 (256)
T TIGR00262 8 GEGAFIPFVTAGDPTLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPN 87 (256)
T ss_pred CCceEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC
Confidence 355678888888764 345678899999999999987 566443 1 1222 34678888876 78
Q ss_pred CCeeEEEeccCc------ccchHHHHhcCCCEEEEccCCcccccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhhhcc
Q 025927 116 LPLDVHLMIVEP------EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVD 189 (246)
Q Consensus 116 ~plDvHLMV~~P------~~~i~~~~~agad~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~~vD 189 (246)
+|++ |||..|| ++|++.++++|++.+++|-|. .++..++++.+|++|++.+++++|.||.+.+++++...|
T Consensus 88 ~plv-~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp--~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~ 164 (256)
T TIGR00262 88 IPIG-LLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLP--LEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQ 164 (256)
T ss_pred CCEE-EEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCC--hHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCC
Confidence 9998 9999999 999999999999999999996 467889999999999999999999999999999999999
Q ss_pred -eEEEEeecCCCCCCc--ccHHHHHHHHHHHHHHHhcCCCCeEEEeCCCC-hhhhhhccc
Q 025927 190 -LVLIMSVNPGFGGQS--FIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVPN 245 (246)
Q Consensus 190 -~VLvMsV~PGfgGQ~--F~~~~l~KI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~l~~ 245 (246)
+|.+||++ |++||+ |.++..++|+++|++.+ ..|.|||||+ .++++++.+
T Consensus 165 gfiy~vs~~-G~TG~~~~~~~~~~~~i~~lr~~~~-----~pi~vgfGI~~~e~~~~~~~ 218 (256)
T TIGR00262 165 GFVYLVSRA-GVTGARNRAASALNELVKRLKAYSA-----KPVLVGFGISKPEQVKQAID 218 (256)
T ss_pred CCEEEEECC-CCCCCcccCChhHHHHHHHHHhhcC-----CCEEEeCCCCCHHHHHHHHH
Confidence 99999998 999996 99999999999999753 2599999997 999998754
No 22
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=99.84 E-value=1e-20 Score=161.66 Aligned_cols=166 Identities=19% Similarity=0.219 Sum_probs=126.4
Q ss_pred cccChhhHHHHH---HHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccC-CCCCeeEEEeccCcccc-hHHHHhcCC
Q 025927 65 LSANFAKLGEQV---KAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQR-VPDFIKAGA 139 (246)
Q Consensus 65 l~aD~~~l~~~i---~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~-t~~plDvHLMV~~P~~~-i~~~~~aga 139 (246)
++.|..++++.+ +.+.+. ++++=+ .+.=..++|++.++++|+. +++++++|+|+.+|.++ ++.+.++|+
T Consensus 5 ~a~d~~~~~~~~~~~~~l~~~-i~~iei-----g~~~~~~~g~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGa 78 (202)
T cd04726 5 VALDLLDLEEALELAKKVPDG-VDIIEA-----GTPLIKSEGMEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGA 78 (202)
T ss_pred EEEcCCCHHHHHHHHHHhhhc-CCEEEc-----CCHHHHHhCHHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCC
Confidence 344766665444 444444 555333 2211468899999999985 78999999999999877 688999999
Q ss_pred CEEEEccCCcccccHHHHHHHHHHcCCcEEEE-EcCCCChHHHHHhhhhcceEEE-EeecCCCCCCcccHHHHHHHHHHH
Q 025927 140 DIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVV-LNPATSLSAIECVLDVVDLVLI-MSVNPGFGGQSFIESQVKKISDLR 217 (246)
Q Consensus 140 d~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlA-lnP~Tpve~l~~~l~~vD~VLv-MsV~PGfgGQ~F~~~~l~KI~~lr 217 (246)
|+|++|.|+. ...+.++++.+|++|+++|++ ++|.|+.+.++.+-..+|+|.+ |++++++.| .+...+++++++
T Consensus 79 d~i~~h~~~~-~~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~~~~~d~v~~~~~~~~~~~~---~~~~~~~i~~~~ 154 (202)
T cd04726 79 DIVTVLGAAP-LSTIKKAVKAAKKYGKEVQVDLIGVEDPEKRAKLLKLGVDIVILHRGIDAQAAG---GWWPEDDLKKVK 154 (202)
T ss_pred CEEEEEeeCC-HHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHCCCCEEEEcCcccccccC---CCCCHHHHHHHH
Confidence 9999999962 235678999999999999996 9999999998844448999888 555444444 456677777777
Q ss_pred HHHHhcCCCCeEEEeCCCChhhhhhccc
Q 025927 218 RMCLEKGVNPWIEVDGGVGPKNAYKVPN 245 (246)
Q Consensus 218 ~l~~~~~~~~~I~VDGGI~~e~i~~l~~ 245 (246)
+. .++.|++|||||.+|++++.+
T Consensus 155 ~~-----~~~~i~~~GGI~~~~i~~~~~ 177 (202)
T cd04726 155 KL-----LGVKVAVAGGITPDTLPEFKK 177 (202)
T ss_pred hh-----cCCCEEEECCcCHHHHHHHHh
Confidence 65 356899999999999998764
No 23
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=99.78 E-value=7.8e-19 Score=147.00 Aligned_cols=166 Identities=20% Similarity=0.157 Sum_probs=132.9
Q ss_pred cEEeeeecccChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhc
Q 025927 58 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKA 137 (246)
Q Consensus 58 ~~IsPSIl~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~a 137 (246)
+.|+|+.++ ..++.+.++++.++|++++|+|++|+++.+++. .++++++.+. ++++|||+.+ +++.+.++
T Consensus 2 ~~it~~~~~--~~~~~~~l~~l~~~g~~~i~lr~~~~~~~~~~~----~~~~i~~~~~-~~~~~l~~~~---~~~~a~~~ 71 (196)
T cd00564 2 YLITDRRLD--GEDLLEVVEAALKGGVTLVQLREKDLSARELLE----LARALRELCR-KYGVPLIIND---RVDLALAV 71 (196)
T ss_pred EEEeCCccc--cchHHHHHHHHHhcCCCEEEEeCCCCCHHHHHH----HHHHHHHHHH-HhCCeEEEeC---hHHHHHHc
Confidence 468999887 457889999999999999999999999999874 4677776654 6799999976 57788999
Q ss_pred CCCEEEEccCCcccccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhh-hcceEEEEeecCCCCCCcc-cHHHHHHHHH
Q 025927 138 GADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSF-IESQVKKISD 215 (246)
Q Consensus 138 gad~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~-~vD~VLvMsV~PGfgGQ~F-~~~~l~KI~~ 215 (246)
|+| .+|++.. ......++.++..+.++|++.+ |+ +.+..... .+|+|.+|.+.|++.++.+ .+..++++++
T Consensus 72 g~~--~vh~~~~--~~~~~~~~~~~~~~~~~g~~~~--t~-~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (196)
T cd00564 72 GAD--GVHLGQD--DLPVAEARALLGPDLIIGVSTH--SL-EEALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLRE 144 (196)
T ss_pred CCC--EEecCcc--cCCHHHHHHHcCCCCEEEeeCC--CH-HHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHH
Confidence 999 5577742 2234566777778999999974 44 55555554 5999999999999999988 8888999988
Q ss_pred HHHHHHhcCCCCeEEEeCCCChhhhhhccc
Q 025927 216 LRRMCLEKGVNPWIEVDGGVGPKNAYKVPN 245 (246)
Q Consensus 216 lr~l~~~~~~~~~I~VDGGI~~e~i~~l~~ 245 (246)
+++. .+..+.++|||+.+|++++.+
T Consensus 145 ~~~~-----~~~pv~a~GGi~~~~i~~~~~ 169 (196)
T cd00564 145 IAEL-----VEIPVVAIGGITPENAAEVLA 169 (196)
T ss_pred HHHh-----CCCCEEEECCCCHHHHHHHHH
Confidence 8776 246799999999999988754
No 24
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=99.73 E-value=1.4e-17 Score=142.73 Aligned_cols=168 Identities=19% Similarity=0.149 Sum_probs=131.3
Q ss_pred CcEEeeeecccChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCC--CeeEEEeccCcccchHHH
Q 025927 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDL--PLDVHLMIVEPEQRVPDF 134 (246)
Q Consensus 57 ~~~IsPSIl~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~--plDvHLMV~~P~~~i~~~ 134 (246)
-+.|+|+.++.+ .++.++++.+.++|++++|+|+||... ++.++.+++...+ ..++|||+. .+++.+
T Consensus 9 ~~~it~~~~~~~-~~~~~~~~~~~~~gv~~v~lr~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~a 77 (212)
T PRK00043 9 LYLITDSRDDSG-RDLLEVVEAALEGGVTLVQLREKGLDT-------RERLELARALKELCRRYGVPLIVN---DRVDLA 77 (212)
T ss_pred EEEEECCccccc-ccHHHHHHHHHhcCCCEEEEeCCCCCH-------HHHHHHHHHHHHHHHHhCCeEEEe---ChHHHH
Confidence 467999988765 678899999999999999999999543 3444444443222 578999996 578899
Q ss_pred HhcCCCEEEEccCCcccccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhhhcceEEEEeecCCCCCCcccHHH-HHHH
Q 025927 135 IKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQ-VKKI 213 (246)
Q Consensus 135 ~~agad~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~~vD~VLvMsV~PGfgGQ~F~~~~-l~KI 213 (246)
.++|+|.+++|.+. .....++.++..|.++|++.+ |+.+..+.+...+|+|.++.+.|+...+...+.. ++++
T Consensus 78 ~~~gad~vh~~~~~----~~~~~~~~~~~~~~~~g~~~~--t~~e~~~a~~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~ 151 (212)
T PRK00043 78 LAVGADGVHLGQDD----LPVADARALLGPDAIIGLSTH--TLEEAAAALAAGADYVGVGPIFPTPTKKDAKAPQGLEGL 151 (212)
T ss_pred HHcCCCEEecCccc----CCHHHHHHHcCCCCEEEEeCC--CHHHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHH
Confidence 99999998888763 223566777788999999875 7677777777789999999999998877776544 8888
Q ss_pred HHHHHHHHhcCCCCeEEEeCCCChhhhhhccc
Q 025927 214 SDLRRMCLEKGVNPWIEVDGGVGPKNAYKVPN 245 (246)
Q Consensus 214 ~~lr~l~~~~~~~~~I~VDGGI~~e~i~~l~~ 245 (246)
+++++.++ ++.|.++||||.+|++++.+
T Consensus 152 ~~~~~~~~----~~~v~a~GGI~~~~i~~~~~ 179 (212)
T PRK00043 152 REIRAAVG----DIPIVAIGGITPENAPEVLE 179 (212)
T ss_pred HHHHHhcC----CCCEEEECCcCHHHHHHHHH
Confidence 88888763 26799999999999988754
No 25
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=99.68 E-value=1.9e-16 Score=151.44 Aligned_cols=166 Identities=21% Similarity=0.301 Sum_probs=137.0
Q ss_pred ecccChhhHHHHHHHHHH---cCCCEEEeeeccCcccCCC-CCCHHHHhhcccCC---CCCeeEEEeccCcccchHHHHh
Q 025927 64 ILSANFAKLGEQVKAVEL---AGCDWIHVDVMDGRFVPNI-TIGPLVVDALRPVT---DLPLDVHLMIVEPEQRVPDFIK 136 (246)
Q Consensus 64 Il~aD~~~l~~~i~~l~~---~g~d~lHiDIMDG~FVpN~-tfgp~~I~~ir~~t---~~plDvHLMV~~P~~~i~~~~~ 136 (246)
.+++|+.++++.++.+++ .|++|+|+ | + |+. .++.+.+++|++.. .+..|+|+|.. |..+++.+.+
T Consensus 7 ~~alD~~~~~~~~~~~~~~~~~Gv~~ie~----g-~-p~~~~~~~~~i~~l~~~~~~~~ii~D~kl~d~-g~~~v~~a~~ 79 (430)
T PRK07028 7 QVALDLLELDRAVEIAKEAVAGGADWIEA----G-T-PLIKSEGMNAIRTLRKNFPDHTIVADMKTMDT-GAIEVEMAAK 79 (430)
T ss_pred EEEeccCCHHHHHHHHHHHHhcCCcEEEe----C-C-HHHHHhhHHHHHHHHHHCCCCEEEEEeeeccc-hHHHHHHHHH
Confidence 356899999988888887 89999998 3 2 654 88999999997753 36789999998 9999999999
Q ss_pred cCCCEEEEccCCcccccHHHHHHHHHHcCCcEEE-EEcCCCChHHHHHhhhh-cceEEEEeecCCCCCCcccHHHHHHHH
Q 025927 137 AGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGV-VLNPATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKIS 214 (246)
Q Consensus 137 agad~It~H~E~~~~~~~~~~i~~Ik~~G~k~Gl-AlnP~Tpve~l~~~l~~-vD~VLvMsV~PGfgGQ~F~~~~l~KI~ 214 (246)
+|+|.|++|.+.. ...+.++++.+|+.|+++++ +++|.|+++.+..+.+. +|+| .+.|||.+|.+.+..++.++
T Consensus 80 aGAdgV~v~g~~~-~~~~~~~i~~a~~~G~~~~~g~~s~~t~~e~~~~a~~~GaD~I---~~~pg~~~~~~~~~~~~~l~ 155 (430)
T PRK07028 80 AGADIVCILGLAD-DSTIEDAVRAARKYGVRLMADLINVPDPVKRAVELEELGVDYI---NVHVGIDQQMLGKDPLELLK 155 (430)
T ss_pred cCCCEEEEecCCC-hHHHHHHHHHHHHcCCEEEEEecCCCCHHHHHHHHHhcCCCEE---EEEeccchhhcCCChHHHHH
Confidence 9999999998841 22467889999999999999 58999999988888765 9998 44599999999887777777
Q ss_pred HHHHHHHhcCCCCeEEEeCCCChhhhhhccc
Q 025927 215 DLRRMCLEKGVNPWIEVDGGVGPKNAYKVPN 245 (246)
Q Consensus 215 ~lr~l~~~~~~~~~I~VDGGI~~e~i~~l~~ 245 (246)
++++.. ++.|.++|||+.+|+.++.+
T Consensus 156 ~l~~~~-----~iPI~a~GGI~~~n~~~~l~ 181 (430)
T PRK07028 156 EVSEEV-----SIPIAVAGGLDAETAAKAVA 181 (430)
T ss_pred HHHhhC-----CCcEEEECCCCHHHHHHHHH
Confidence 776542 36799999999999987754
No 26
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=99.55 E-value=1.2e-14 Score=128.95 Aligned_cols=114 Identities=18% Similarity=0.216 Sum_probs=91.5
Q ss_pred ecccChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccC-CCCCeeEEE--eccCcccchHHHHhcCCC
Q 025927 64 ILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHL--MIVEPEQRVPDFIKAGAD 140 (246)
Q Consensus 64 Il~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~-t~~plDvHL--MV~~P~~~i~~~~~agad 140 (246)
++++|+.++++.++.+++.|.++.|+||||+.|+ +||+++|++|++. +.+++|+|| |.++|.++++.+.++|+|
T Consensus 6 ilAlD~~~~~~~l~~~~~~~~~~~~ikvg~~~f~---~~G~~~i~~l~~~~~~i~~D~Kl~Di~~t~~~~i~~~~~~gad 82 (230)
T PRK00230 6 IVALDFPSKEEALAFLDQLDPAVLFVKVGMELFT---AGGPQFVRELKQRGFKVFLDLKLHDIPNTVAKAVRALAKLGVD 82 (230)
T ss_pred EEEcCCCCHHHHHHHHHhcCCcccEEEEcHHHHH---hcCHHHHHHHHhcCCCEEEEeehhhccccHHHHHHHHHHcCCC
Confidence 5778999999999999999999999999999998 8999999999987 678999999 999999999999999999
Q ss_pred EEEEccCCcccccHHHHHHHHHHc--CCcEEEEEcCCCChHHH
Q 025927 141 IVSVHCEQSSTIHLHRTLNQIKDL--GAKAGVVLNPATSLSAI 181 (246)
Q Consensus 141 ~It~H~E~~~~~~~~~~i~~Ik~~--G~k~GlAlnP~Tpve~l 181 (246)
++|+|.|+- ..-+....+..++. +...||.+=-..+.+.+
T Consensus 83 ~itvH~~ag-~~~i~~~~~~~~~~~~~~~~~V~~lts~~~~~l 124 (230)
T PRK00230 83 MVNVHASGG-PRMMKAAREALEPKSRPLLIAVTVLTSMDEEDL 124 (230)
T ss_pred EEEEcccCC-HHHHHHHHHHhhccCCCeEEEEEECCCCCHHHH
Confidence 999999962 22233333333332 45667664433333444
No 27
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=99.52 E-value=2.1e-13 Score=123.89 Aligned_cols=180 Identities=14% Similarity=0.207 Sum_probs=142.9
Q ss_pred CCcEEeeeecccChh--hHHHHHHHHHHcCCCEEEeee------ccCcccCC---------CC--CCHHHHhhcccCCCC
Q 025927 56 SDIIVSPSILSANFA--KLGEQVKAVELAGCDWIHVDV------MDGRFVPN---------IT--IGPLVVDALRPVTDL 116 (246)
Q Consensus 56 ~~~~IsPSIl~aD~~--~l~~~i~~l~~~g~d~lHiDI------MDG~FVpN---------~t--fgp~~I~~ir~~t~~ 116 (246)
++..+-|=+.+.|+. ...+.++.+.++|+|.+-+-| .||--.-. ++ -..++++.+|+..+.
T Consensus 13 ~~~ali~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~ 92 (263)
T CHL00200 13 KQCALIPFITAGDPDIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKA 92 (263)
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCC
Confidence 455688888888764 345678889999999999974 67754321 11 235678888876677
Q ss_pred CeeEEEecc-Cc------ccchHHHHhcCCCEEEEccCCcccccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhhhcc
Q 025927 117 PLDVHLMIV-EP------EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVD 189 (246)
Q Consensus 117 plDvHLMV~-~P------~~~i~~~~~agad~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~~vD 189 (246)
|+- ||.. || ++|++.++++|+|.+++|-+. .++..++++.+|++|+.....++|+||.+.++.+....+
T Consensus 93 p~v--lm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP--~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~ 168 (263)
T CHL00200 93 PIV--IFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLP--YEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAP 168 (263)
T ss_pred CEE--EEecccHHHHhCHHHHHHHHHHcCCeEEEecCCC--HHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCC
Confidence 863 8887 66 568999999999999999986 467889999999999999999999999999999999999
Q ss_pred -eEEEEeecCCCCCCc--ccHHHHHHHHHHHHHHHhcCCCCeEEEeCCCC-hhhhhhccc
Q 025927 190 -LVLIMSVNPGFGGQS--FIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVPN 245 (246)
Q Consensus 190 -~VLvMsV~PGfgGQ~--F~~~~l~KI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~l~~ 245 (246)
+|.+|| .||++||+ +.++..+.++++|+. .+..|.|++||+ .++++++.+
T Consensus 169 gFIY~vS-~~GvTG~~~~~~~~~~~~i~~ir~~-----t~~Pi~vGFGI~~~e~~~~~~~ 222 (263)
T CHL00200 169 GCIYLVS-TTGVTGLKTELDKKLKKLIETIKKM-----TNKPIILGFGISTSEQIKQIKG 222 (263)
T ss_pred CcEEEEc-CCCCCCCCccccHHHHHHHHHHHHh-----cCCCEEEECCcCCHHHHHHHHh
Confidence 999999 89999995 445555555555553 245699999999 889988754
No 28
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=99.36 E-value=4.2e-11 Score=98.48 Aligned_cols=171 Identities=25% Similarity=0.205 Sum_probs=132.2
Q ss_pred hhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchH----HHHhcCCCEEEEc
Q 025927 70 AKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVP----DFIKAGADIVSVH 145 (246)
Q Consensus 70 ~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~----~~~~agad~It~H 145 (246)
.+..+.++.+.+.|++.+|+..++.++..+...++..++.++...+.|+-+|+++.++..+++ ...++|+|.|.+|
T Consensus 12 ~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v~l~ 91 (200)
T cd04722 12 GDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAAAAARAAGADGVEIH 91 (200)
T ss_pred HHHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhcCCcEEEEEccCCchhhhhHHHHHHHHcCCCEEEEe
Confidence 466788999999999999999999999988877766677777777899999999999998875 6788999999999
Q ss_pred cCCcc-cccHHHHHHHHHHc--CCcEEEEEcCCCChHHHHHhhhhcceEEEEeecCCCCCCcccHHHHHHHHHHHHHHHh
Q 025927 146 CEQSS-TIHLHRTLNQIKDL--GAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLE 222 (246)
Q Consensus 146 ~E~~~-~~~~~~~i~~Ik~~--G~k~GlAlnP~Tpve~l~~~l~~vD~VLvMsV~PGfgGQ~F~~~~l~KI~~lr~l~~~ 222 (246)
.+... .....++++.+|+. ++.+++.+.+.+..+...-.-.-+|+|.+....++..++...+.....++++++
T Consensus 92 ~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 167 (200)
T cd04722 92 GAVGYLAREDLELIRELREAVPDVKVVVKLSPTGELAAAAAEEAGVDEVGLGNGGGGGGGRDAVPIADLLLILAKR---- 167 (200)
T ss_pred ccCCcHHHHHHHHHHHHHHhcCCceEEEEECCCCccchhhHHHcCCCEEEEcCCcCCCCCccCchhHHHHHHHHHh----
Confidence 98410 01256788999987 899999999988776532112248999999888877777666544444444332
Q ss_pred cCCCCeEEEeCCCCh-hhhhhccc
Q 025927 223 KGVNPWIEVDGGVGP-KNAYKVPN 245 (246)
Q Consensus 223 ~~~~~~I~VDGGI~~-e~i~~l~~ 245 (246)
..+..|.++|||+. +++.++.+
T Consensus 168 -~~~~pi~~~GGi~~~~~~~~~~~ 190 (200)
T cd04722 168 -GSKVPVIAGGGINDPEDAAEALA 190 (200)
T ss_pred -cCCCCEEEECCCCCHHHHHHHHH
Confidence 23467999999999 88877643
No 29
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=98.68 E-value=3.1e-08 Score=86.76 Aligned_cols=100 Identities=19% Similarity=0.259 Sum_probs=84.2
Q ss_pred ecccChhhHHHHHHHHHHcC--CCE--EEeeeccCcccCCCCCCHHHHhhcccCCC-CCeeE--EEeccCcccchHHHHh
Q 025927 64 ILSANFAKLGEQVKAVELAG--CDW--IHVDVMDGRFVPNITIGPLVVDALRPVTD-LPLDV--HLMIVEPEQRVPDFIK 136 (246)
Q Consensus 64 Il~aD~~~l~~~i~~l~~~g--~d~--lHiDIMDG~FVpN~tfgp~~I~~ir~~t~-~plDv--HLMV~~P~~~i~~~~~ 136 (246)
++++|+.++++.++.+++.+ ++| +|+|+++ +||++.+++|++... +.+|+ |.|-+.+..+++.+.+
T Consensus 2 ivAlD~~~~~~a~~~~~~~~~~v~~iKig~~l~~-------~~G~~~v~~l~~~~~~v~lD~K~~Dig~t~~~~~~~~~~ 74 (213)
T TIGR01740 2 IVALDVTTKDEALDLADSLGPEIEVIKVGIDLLL-------DGGDKIIDELAKLNKLIFLDLKFADIPNTVKLQYESKIK 74 (213)
T ss_pred EEECCCCCHHHHHHHHHhcCCcCcEEEECHHHHH-------hcCHHHHHHHHHcCCCEEEEEeecchHHHHHHHHHHHHh
Confidence 57899999999999999998 889 9999999 789999999998654 45899 9999999999999999
Q ss_pred cCCCEEEEccCCcccccHHHHHHHHHHcCCcE-EEE
Q 025927 137 AGADIVSVHCEQSSTIHLHRTLNQIKDLGAKA-GVV 171 (246)
Q Consensus 137 agad~It~H~E~~~~~~~~~~i~~Ik~~G~k~-GlA 171 (246)
+|+|++|+|.++. ..-+..+++.+++.|.++ +++
T Consensus 75 ~gad~vTvh~~~g-~~~l~~~~~~~~~~~~~v~~v~ 109 (213)
T TIGR01740 75 QGADMVNVHGVAG-SESVEAAKEAASEGGRGLLAVT 109 (213)
T ss_pred cCCCEEEEcCCCC-HHHHHHHHHHhhcCCCeEEEEE
Confidence 9999999999962 333677888888777433 444
No 30
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=98.31 E-value=2.6e-05 Score=67.91 Aligned_cols=159 Identities=19% Similarity=0.198 Sum_probs=110.9
Q ss_pred hHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEEEccCCcc
Q 025927 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS 150 (246)
Q Consensus 71 ~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It~H~E~~~ 150 (246)
...+..+..+++|+++||+---|+.|--+ ++.++.+|+.+++|+.+.=.+.++ ..++.+.++|+|.+++-.....
T Consensus 32 ~~~~~A~~~~~~GA~~l~v~~~~~~~~g~----~~~~~~i~~~v~iPi~~~~~i~~~-~~v~~~~~~Gad~v~l~~~~~~ 106 (217)
T cd00331 32 DPVEIAKAYEKAGAAAISVLTEPKYFQGS----LEDLRAVREAVSLPVLRKDFIIDP-YQIYEARAAGADAVLLIVAALD 106 (217)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCccccCCC----HHHHHHHHHhcCCCEEECCeecCH-HHHHHHHHcCCCEEEEeeccCC
Confidence 45566777789999999998888776433 578999988888998876556666 4788999999999987654332
Q ss_pred cccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhhh-cceEEEEeecCCCCCCcccHHHHHHHHHHHHHHHhcCCCCeE
Q 025927 151 TIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWI 229 (246)
Q Consensus 151 ~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~~-vD~VLvMsV~PGfgGQ~F~~~~l~KI~~lr~l~~~~~~~~~I 229 (246)
...+.++++..+..|+.+=+.+. +.++++...+. +|++.+- |..++.+.+.. +.++++++.++ .+..+
T Consensus 107 ~~~~~~~~~~~~~~g~~~~v~v~---~~~e~~~~~~~g~~~i~~t----~~~~~~~~~~~-~~~~~l~~~~~---~~~pv 175 (217)
T cd00331 107 DEQLKELYELARELGMEVLVEVH---DEEELERALALGAKIIGIN----NRDLKTFEVDL-NTTERLAPLIP---KDVIL 175 (217)
T ss_pred HHHHHHHHHHHHHcCCeEEEEEC---CHHHHHHHHHcCCCEEEEe----CCCccccCcCH-HHHHHHHHhCC---CCCEE
Confidence 23567778888888888755554 55566665543 7877543 45555555443 55666655542 12457
Q ss_pred EEeCCCCh-hhhhhccc
Q 025927 230 EVDGGVGP-KNAYKVPN 245 (246)
Q Consensus 230 ~VDGGI~~-e~i~~l~~ 245 (246)
.+=|||+. ++++++.+
T Consensus 176 ia~gGI~s~edi~~~~~ 192 (217)
T cd00331 176 VSESGISTPEDVKRLAE 192 (217)
T ss_pred EEEcCCCCHHHHHHHHH
Confidence 77899965 99988764
No 31
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=98.09 E-value=7.5e-05 Score=64.54 Aligned_cols=154 Identities=19% Similarity=0.221 Sum_probs=101.3
Q ss_pred HHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCC-CeeEEEeccCcccchH-HHHhcCCCEEEEccCCccc
Q 025927 74 EQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDL-PLDVHLMIVEPEQRVP-DFIKAGADIVSVHCEQSST 151 (246)
Q Consensus 74 ~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~-plDvHLMV~~P~~~i~-~~~~agad~It~H~E~~~~ 151 (246)
++++.+.+.|+|++.+=.-+. .| =.+.++..+.|++.+.- .-.|-+.+.+....+. ...+.|+|.|.+|-+.
T Consensus 10 ed~~~a~~~Gvd~ig~i~~~~--s~-R~v~~~~a~~l~~~~~~~~~~V~v~vn~~~~~i~~ia~~~~~d~Vqlhg~e--- 83 (203)
T cd00405 10 EDALAAAEAGADAIGFIFAPK--SP-RYVSPEQAREIVAALPPFVKRVGVFVNEDLEEILEIAEELGLDVVQLHGDE--- 83 (203)
T ss_pred HHHHHHHHcCCCEEEEecCCC--CC-CCCCHHHHHHHHHhCCCCCcEEEEEeCCCHHHHHHHHHhcCCCEEEECCCC---
Confidence 578888899999999954331 11 23457788888776543 3567777776544444 4456899999999652
Q ss_pred ccHHHHHHHHHH-cCCcE--EEEEcCCCChHHHHHhhhhcceEEEEeecCCC---CCCcccHHHHHHHHHHHHHHHhcCC
Q 025927 152 IHLHRTLNQIKD-LGAKA--GVVLNPATSLSAIECVLDVVDLVLIMSVNPGF---GGQSFIESQVKKISDLRRMCLEKGV 225 (246)
Q Consensus 152 ~~~~~~i~~Ik~-~G~k~--GlAlnP~Tpve~l~~~l~~vD~VLvMsV~PGf---gGQ~F~~~~l~KI~~lr~l~~~~~~ 225 (246)
.+ ..++.+|+ .|.+. ++.++..+..+....+-..+|++++=|-.++. .|++|.-+.++++. .
T Consensus 84 -~~-~~~~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~aD~il~dt~~~~~~Gg~g~~~~~~~l~~~~----------~ 151 (203)
T cd00405 84 -SP-EYCAQLRARLGLPVIKAIRVKDEEDLEKAAAYAGEVDAILLDSKSGGGGGGTGKTFDWSLLRGLA----------S 151 (203)
T ss_pred -CH-HHHHHHHhhcCCcEEEEEecCChhhHHHhhhccccCCEEEEcCCCCCCCCCCcceEChHHhhccc----------c
Confidence 12 24556665 35443 35555555555545555679999987765532 47888887776554 1
Q ss_pred CCeEEEeCCCChhhhhhccc
Q 025927 226 NPWIEVDGGVGPKNAYKVPN 245 (246)
Q Consensus 226 ~~~I~VDGGI~~e~i~~l~~ 245 (246)
...+.+=||||.+|+.++.+
T Consensus 152 ~~PvilaGGI~~~Nv~~~i~ 171 (203)
T cd00405 152 RKPVILAGGLTPDNVAEAIR 171 (203)
T ss_pred CCCEEEECCCChHHHHHHHH
Confidence 24577899999999988753
No 32
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=97.91 E-value=0.00011 Score=64.07 Aligned_cols=126 Identities=15% Similarity=0.204 Sum_probs=87.4
Q ss_pred HHhhcccCCCCCeeEEEeccC----cccchHHHHhcCCCEEEEccCCcccccHHHHHHHHHHcCCcEEEEEcCCCChHHH
Q 025927 106 VVDALRPVTDLPLDVHLMIVE----PEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAI 181 (246)
Q Consensus 106 ~I~~ir~~t~~plDvHLMV~~----P~~~i~~~~~agad~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l 181 (246)
.++.+++..+.|+-+.+++.+ ..++++.+.++|+|.|.+|.. ...++++.+++.+++++..+.+ .+.+
T Consensus 44 ~~~~i~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~g~d~v~l~~~-----~~~~~~~~~~~~~i~~i~~v~~---~~~~ 115 (236)
T cd04730 44 EIRKIRALTDKPFGVNLLVPSSNPDFEALLEVALEEGVPVVSFSFG-----PPAEVVERLKAAGIKVIPTVTS---VEEA 115 (236)
T ss_pred HHHHHHHhcCCCeEEeEecCCCCcCHHHHHHHHHhCCCCEEEEcCC-----CCHHHHHHHHHcCCEEEEeCCC---HHHH
Confidence 455566544557789999875 345788888999999999864 2356788888889998876543 3444
Q ss_pred HHhhh-hcceEEEEeecCCCCCCcccHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCh-hhhhhcc
Q 025927 182 ECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP-KNAYKVP 244 (246)
Q Consensus 182 ~~~l~-~vD~VLvMsV~PGfgGQ~F~~~~l~KI~~lr~l~~~~~~~~~I~VDGGI~~-e~i~~l~ 244 (246)
+.+.+ -+|+|.+.+..+|..+..+....++-++++++.. +..+.+.|||+. +++.++.
T Consensus 116 ~~~~~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~-----~~Pvi~~GGI~~~~~v~~~l 175 (236)
T cd04730 116 RKAEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAV-----DIPVIAAGGIADGRGIAAAL 175 (236)
T ss_pred HHHHHcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHh-----CCCEEEECCCCCHHHHHHHH
Confidence 44433 4899998877665555555444566666666544 246889999997 8888754
No 33
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=97.90 E-value=0.00039 Score=60.77 Aligned_cols=167 Identities=20% Similarity=0.253 Sum_probs=106.8
Q ss_pred CcEEeeeecccChhh----HHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEe--------c
Q 025927 57 DIIVSPSILSANFAK----LGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLM--------I 124 (246)
Q Consensus 57 ~~~IsPSIl~aD~~~----l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLM--------V 124 (246)
.+++|--....|+.+ ..+..+.+.++|+..+.++ +++.++.+|+.+++|+-.-+. .
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~G~~~~~~~------------~~~~i~~i~~~~~~Pil~~~~~d~~~~~~~ 73 (221)
T PRK01130 6 GLIVSCQALPGEPLHSPEIMAAMALAAVQGGAVGIRAN------------GVEDIKAIRAVVDVPIIGIIKRDYPDSEVY 73 (221)
T ss_pred CEEEEecCCCCCCCCCHHHHHHHHHHHHHCCCeEEEcC------------CHHHHHHHHHhCCCCEEEEEecCCCCCCce
Confidence 567777777777765 4566677889999999873 278999999988888742221 1
Q ss_pred cCc-ccchHHHHhcCCCEEEEccCCc---ccccHHHHHHHHHH-cCCcEEEEEcCCCChHHHHHhhhh-cceEEEEeecC
Q 025927 125 VEP-EQRVPDFIKAGADIVSVHCEQS---STIHLHRTLNQIKD-LGAKAGVVLNPATSLSAIECVLDV-VDLVLIMSVNP 198 (246)
Q Consensus 125 ~~P-~~~i~~~~~agad~It~H~E~~---~~~~~~~~i~~Ik~-~G~k~GlAlnP~Tpve~l~~~l~~-vD~VLvMsV~P 198 (246)
..+ .++++.+.++|+|.|.+=.-.. ......++++.+|+ .|+.+.. +.++.+.++...+. +|+|.+- .-
T Consensus 74 ~~~~~~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~~~i~vi~---~v~t~ee~~~a~~~G~d~i~~~--~~ 148 (221)
T PRK01130 74 ITPTLKEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEYPGQLLMA---DCSTLEEGLAAQKLGFDFIGTT--LS 148 (221)
T ss_pred ECCCHHHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCeEEE---eCCCHHHHHHHHHcCCCEEEcC--Cc
Confidence 122 2468888999999887621100 01356788999998 7777553 34566777665543 7876431 11
Q ss_pred CCCCCc--ccHHHHHHHHHHHHHHHhcCCCCeEEEeCCC-Chhhhhhccc
Q 025927 199 GFGGQS--FIESQVKKISDLRRMCLEKGVNPWIEVDGGV-GPKNAYKVPN 245 (246)
Q Consensus 199 GfgGQ~--F~~~~l~KI~~lr~l~~~~~~~~~I~VDGGI-~~e~i~~l~~ 245 (246)
|+.+.. ..+..++.++++++.. +..+.+.||| +.+++.++.+
T Consensus 149 g~t~~~~~~~~~~~~~i~~i~~~~-----~iPvia~GGI~t~~~~~~~l~ 193 (221)
T PRK01130 149 GYTEETKKPEEPDFALLKELLKAV-----GCPVIAEGRINTPEQAKKALE 193 (221)
T ss_pred eeecCCCCCCCcCHHHHHHHHHhC-----CCCEEEECCCCCHHHHHHHHH
Confidence 333321 2233355566665543 3468899999 5889887653
No 34
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=97.90 E-value=0.00019 Score=65.35 Aligned_cols=180 Identities=20% Similarity=0.255 Sum_probs=129.5
Q ss_pred CCcEEeeeecccChh--hHHHHHHHHHHcCCCEEEeee------ccCcccCC---------CCC--CHHHHhhcc-cCCC
Q 025927 56 SDIIVSPSILSANFA--KLGEQVKAVELAGCDWIHVDV------MDGRFVPN---------ITI--GPLVVDALR-PVTD 115 (246)
Q Consensus 56 ~~~~IsPSIl~aD~~--~l~~~i~~l~~~g~d~lHiDI------MDG~FVpN---------~tf--gp~~I~~ir-~~t~ 115 (246)
++..+.|=+.+.++. ...+-++.+.+.|+|++-+-+ .||-.+-. +++ ..+.++++| +..+
T Consensus 10 ~~~~li~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~ 89 (258)
T PRK13111 10 GRKALIPYITAGDPDLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPT 89 (258)
T ss_pred CCccEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC
Confidence 355677888888644 555778899999999999874 66655432 121 356777888 4567
Q ss_pred CCeeEEEecc-Cc------ccchHHHHhcCCCEEEEccCCcccccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhhhc
Q 025927 116 LPLDVHLMIV-EP------EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVV 188 (246)
Q Consensus 116 ~plDvHLMV~-~P------~~~i~~~~~agad~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~~v 188 (246)
.|+- ||.. || ++|++.+.++|+|-+.+. +- ..++..++.+.++++|+..-.-+.|+||-+.++.+....
T Consensus 90 ~p~v--lm~Y~N~i~~~G~e~f~~~~~~aGvdGviip-DL-p~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s 165 (258)
T PRK13111 90 IPIV--LMTYYNPIFQYGVERFAADAAEAGVDGLIIP-DL-PPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHA 165 (258)
T ss_pred CCEE--EEecccHHhhcCHHHHHHHHHHcCCcEEEEC-CC-CHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhC
Confidence 7874 7774 44 467999999999999986 31 234667889999999999999999999999998887653
Q ss_pred -ceEEEEeecCCCCCC--cccHHHHHHHHHHHHHHHhcCCCCeEEEeCCC-Chhhhhhccc
Q 025927 189 -DLVLIMSVNPGFGGQ--SFIESQVKKISDLRRMCLEKGVNPWIEVDGGV-GPKNAYKVPN 245 (246)
Q Consensus 189 -D~VLvMsV~PGfgGQ--~F~~~~l~KI~~lr~l~~~~~~~~~I~VDGGI-~~e~i~~l~~ 245 (246)
++|-+.++. |-.|. .+.+...+.++++|+.. +..+.|-||| +.++++++.+
T Consensus 166 ~gfIY~vs~~-GvTG~~~~~~~~~~~~i~~vk~~~-----~~pv~vGfGI~~~e~v~~~~~ 220 (258)
T PRK13111 166 SGFVYYVSRA-GVTGARSADAADLAELVARLKAHT-----DLPVAVGFGISTPEQAAAIAA 220 (258)
T ss_pred CCcEEEEeCC-CCCCcccCCCccHHHHHHHHHhcC-----CCcEEEEcccCCHHHHHHHHH
Confidence 556665663 43343 45666677888887753 2468899999 6688887653
No 35
>PLN02591 tryptophan synthase
Probab=97.88 E-value=0.0003 Score=63.80 Aligned_cols=176 Identities=17% Similarity=0.268 Sum_probs=128.3
Q ss_pred EeeeecccChh--hHHHHHHHHHHcCCCEEEeee------ccCcccCC---------CC--CCHHHHhhcccCCCCCeeE
Q 025927 60 VSPSILSANFA--KLGEQVKAVELAGCDWIHVDV------MDGRFVPN---------IT--IGPLVVDALRPVTDLPLDV 120 (246)
Q Consensus 60 IsPSIl~aD~~--~l~~~i~~l~~~g~d~lHiDI------MDG~FVpN---------~t--fgp~~I~~ir~~t~~plDv 120 (246)
+-|=+.+.|+. ...+.++.+.++|+|.+-+-| .||--+-+ ++ =..+.++.+|+..+.|+-
T Consensus 4 li~yi~aG~P~~e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~i- 82 (250)
T PLN02591 4 FIPYITAGDPDLDTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIV- 82 (250)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEE-
Confidence 44556666543 456778899999999999974 67754432 11 135677888876677864
Q ss_pred EEecc-Cc------ccchHHHHhcCCCEEEEccCCcccccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhhhc-ceEE
Q 025927 121 HLMIV-EP------EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVV-DLVL 192 (246)
Q Consensus 121 HLMV~-~P------~~~i~~~~~agad~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~~v-D~VL 192 (246)
||.+ || ++|++.+.++|+|-+.++== ..++...+.+.++++|+..=.-+.|.|+-+.++.+.... ++|-
T Consensus 83 -lm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDL--P~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY 159 (250)
T PLN02591 83 -LFTYYNPILKRGIDKFMATIKEAGVHGLVVPDL--PLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVY 159 (250)
T ss_pred -EEecccHHHHhHHHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEE
Confidence 8887 55 56799999999999998732 234567889999999999999999999999999987765 5666
Q ss_pred EEeecCCCCCC--cccHHHHHHHHHHHHHHHhcCCCCeEEEeCCCC-hhhhhhccc
Q 025927 193 IMSVNPGFGGQ--SFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVPN 245 (246)
Q Consensus 193 vMsV~PGfgGQ--~F~~~~l~KI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~l~~ 245 (246)
+.++ .|-.|. .+.+...+.++++|+.. +.-+.|--||+ .++++++.+
T Consensus 160 ~Vs~-~GvTG~~~~~~~~~~~~i~~vk~~~-----~~Pv~vGFGI~~~e~v~~~~~ 209 (250)
T PLN02591 160 LVSS-TGVTGARASVSGRVESLLQELKEVT-----DKPVAVGFGISKPEHAKQIAG 209 (250)
T ss_pred EeeC-CCCcCCCcCCchhHHHHHHHHHhcC-----CCceEEeCCCCCHHHHHHHHh
Confidence 6666 566665 45566566688877742 34688888999 888887654
No 36
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=97.84 E-value=0.00082 Score=58.67 Aligned_cols=164 Identities=15% Similarity=0.173 Sum_probs=104.5
Q ss_pred ccChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEEEc
Q 025927 66 SANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVH 145 (246)
Q Consensus 66 ~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It~H 145 (246)
..|+..+. +.+++.|+|++|+==.|+.|. +-....++++.+++.+++|+.+==-+..+++ ++.+.++|||.|.+=
T Consensus 28 ~~dp~~~a---~~~~~~g~d~l~v~dl~~~~~-~~~~~~~~i~~i~~~~~~pv~~~GgI~~~e~-~~~~~~~Gad~vvig 102 (234)
T cd04732 28 SDDPVEVA---KKWEEAGAKWLHVVDLDGAKG-GEPVNLELIEEIVKAVGIPVQVGGGIRSLED-IERLLDLGVSRVIIG 102 (234)
T ss_pred CCCHHHHH---HHHHHcCCCEEEEECCCcccc-CCCCCHHHHHHHHHhcCCCEEEeCCcCCHHH-HHHHHHcCCCEEEEC
Confidence 45666655 445678999999965566653 3456688999998877777665445566665 567778999999887
Q ss_pred cCCcccccHHHHHHHHHHcCC-cEEEEEc---------------CCCChHHHHHhhhh-cceEEEEeecCCCCCCcccHH
Q 025927 146 CEQSSTIHLHRTLNQIKDLGA-KAGVVLN---------------PATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIES 208 (246)
Q Consensus 146 ~E~~~~~~~~~~i~~Ik~~G~-k~GlAln---------------P~Tpve~l~~~l~~-vD~VLvMsV~PGfgGQ~F~~~ 208 (246)
-+. ..++..+-+..++.|. ++-++++ +.++++.++.+.+. +|.++++.+...-..+...-+
T Consensus 103 s~~--l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~iii~~~~~~g~~~g~~~~ 180 (234)
T cd04732 103 TAA--VKNPELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELGVKAIIYTDISRDGTLSGPNFE 180 (234)
T ss_pred chH--HhChHHHHHHHHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcCCCEEEEEeecCCCccCCCCHH
Confidence 664 3455555555566664 4545543 33445555555554 899999999763322333434
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEeCCCCh-hhhhhcc
Q 025927 209 QVKKISDLRRMCLEKGVNPWIEVDGGVGP-KNAYKVP 244 (246)
Q Consensus 209 ~l~KI~~lr~l~~~~~~~~~I~VDGGI~~-e~i~~l~ 244 (246)
.+ +++++.. +..+.+-|||+. +.+.++.
T Consensus 181 ~i---~~i~~~~-----~ipvi~~GGi~~~~di~~~~ 209 (234)
T cd04732 181 LY---KELAAAT-----GIPVIASGGVSSLDDIKALK 209 (234)
T ss_pred HH---HHHHHhc-----CCCEEEecCCCCHHHHHHHH
Confidence 44 4444332 346889999985 3455543
No 37
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=97.82 E-value=0.0016 Score=57.04 Aligned_cols=164 Identities=18% Similarity=0.176 Sum_probs=102.7
Q ss_pred cccChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEEE
Q 025927 65 LSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSV 144 (246)
Q Consensus 65 l~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It~ 144 (246)
+..|+..+ ++.+++.|++++|+==-|+.+ -.-.-..++++.+++.+++|+.+===+.+++. ++.+.++|++.|.+
T Consensus 26 ~~~dp~~~---a~~~~~~g~~~l~v~dl~~~~-~g~~~~~~~i~~i~~~~~~pi~~ggGI~~~ed-~~~~~~~Ga~~vvl 100 (230)
T TIGR00007 26 YGDDPVEA---AKKWEEEGAERIHVVDLDGAK-EGGPVNLPVIKKIVRETGVPVQVGGGIRSLED-VEKLLDLGVDRVII 100 (230)
T ss_pred ecCCHHHH---HHHHHHcCCCEEEEEeCCccc-cCCCCcHHHHHHHHHhcCCCEEEeCCcCCHHH-HHHHHHcCCCEEEE
Confidence 34455555 555688999999992223333 12223467899998877777666445555544 56788899999988
Q ss_pred ccCCcccccHHHHHHHHHHcCC-cEEEEEc---------------CCCChHHHHHhhhh-cceEEEEeecCCCCCCcccH
Q 025927 145 HCEQSSTIHLHRTLNQIKDLGA-KAGVVLN---------------PATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIE 207 (246)
Q Consensus 145 H~E~~~~~~~~~~i~~Ik~~G~-k~GlAln---------------P~Tpve~l~~~l~~-vD~VLvMsV~PGfgGQ~F~~ 207 (246)
=.+. ..++..+.+..++.|. ++-++++ +.++++.++.+.+. +|.++++.+..-...+..+-
T Consensus 101 gs~~--l~d~~~~~~~~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~~ii~~~~~~~g~~~g~~~ 178 (230)
T TIGR00007 101 GTAA--VENPDLVKELLKEYGPERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEELGLEGIIYTDISRDGTLSGPNF 178 (230)
T ss_pred ChHH--hhCHHHHHHHHHHhCCCcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhCCCCEEEEEeecCCCCcCCCCH
Confidence 7664 3456667777888873 3555544 23445555556554 89999998876433334444
Q ss_pred HHHHHHHHHHHHHHhcCCCCeEEEeCCCCh-hhhhhc
Q 025927 208 SQVKKISDLRRMCLEKGVNPWIEVDGGVGP-KNAYKV 243 (246)
Q Consensus 208 ~~l~KI~~lr~l~~~~~~~~~I~VDGGI~~-e~i~~l 243 (246)
+.++ ++++. .+..+.+=|||+. +.++++
T Consensus 179 ~~i~---~i~~~-----~~ipvia~GGi~~~~di~~~ 207 (230)
T TIGR00007 179 ELTK---ELVKA-----VNVPVIASGGVSSIDDLIAL 207 (230)
T ss_pred HHHH---HHHHh-----CCCCEEEeCCCCCHHHHHHH
Confidence 4444 33333 2356888999965 355443
No 38
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=97.78 E-value=0.00045 Score=61.59 Aligned_cols=170 Identities=22% Similarity=0.317 Sum_probs=122.1
Q ss_pred cccChhhHHHHHHHHHHcCCCEEEeeecc-CcccCC-CCCCHHHHhhccc-CCCCCeeEEEeccCcccchHH-HHhcCCC
Q 025927 65 LSANFAKLGEQVKAVELAGCDWIHVDVMD-GRFVPN-ITIGPLVVDALRP-VTDLPLDVHLMIVEPEQRVPD-FIKAGAD 140 (246)
Q Consensus 65 l~aD~~~l~~~i~~l~~~g~d~lHiDIMD-G~FVpN-~tfgp~~I~~ir~-~t~~plDvHLMV~~P~~~i~~-~~~agad 140 (246)
++.|+.+|++.++.+++. .++ +||.. |+ |= ..+|.+.|+.||+ +.+.++-+-+=+.+--.+.-+ ..++|||
T Consensus 8 vALD~~~l~~Ai~~a~~v-~~~--~diiEvGT--pLik~eG~~aV~~lr~~~pd~~IvAD~Kt~D~G~~e~~ma~~aGAd 82 (217)
T COG0269 8 VALDLLDLEEAIEIAEEV-ADY--VDIIEVGT--PLIKAEGMRAVRALRELFPDKIIVADLKTADAGAIEARMAFEAGAD 82 (217)
T ss_pred eeecccCHHHHHHHHHHh-hhc--ceEEEeCc--HHHHHhhHHHHHHHHHHCCCCeEEeeeeecchhHHHHHHHHHcCCC
Confidence 357999999999888876 455 55544 32 32 3789999999998 478888888888887766544 4779999
Q ss_pred EEEEccCCcccccHHHHHHHHHHcCCcEEEE-EcCCCChHHHHHhh-hhcceEEEEe-ecCCCCCCcccHHHHHHHHHHH
Q 025927 141 IVSVHCEQSSTIHLHRTLNQIKDLGAKAGVV-LNPATSLSAIECVL-DVVDLVLIMS-VNPGFGGQSFIESQVKKISDLR 217 (246)
Q Consensus 141 ~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlA-lnP~Tpve~l~~~l-~~vD~VLvMs-V~PGfgGQ~F~~~~l~KI~~lr 217 (246)
.+|+=.=+ ....+...++..|+.|.++=+= +|-.||.+....+- --+|++++-. ++-=-.|+.+-.+.+++++++.
T Consensus 83 ~~tV~g~A-~~~TI~~~i~~A~~~~~~v~iDl~~~~~~~~~~~~l~~~gvd~~~~H~g~D~q~~G~~~~~~~l~~ik~~~ 161 (217)
T COG0269 83 WVTVLGAA-DDATIKKAIKVAKEYGKEVQIDLIGVWDPEQRAKWLKELGVDQVILHRGRDAQAAGKSWGEDDLEKIKKLS 161 (217)
T ss_pred EEEEEecC-CHHHHHHHHHHHHHcCCeEEEEeecCCCHHHHHHHHHHhCCCEEEEEecccHhhcCCCccHHHHHHHHHhh
Confidence 99986543 1234677888889999877554 45556666666654 3588888753 3322357777667787777765
Q ss_pred HHHHhcCCCCeEEEeCCCChhhhhhcccC
Q 025927 218 RMCLEKGVNPWIEVDGGVGPKNAYKVPNI 246 (246)
Q Consensus 218 ~l~~~~~~~~~I~VDGGI~~e~i~~l~~~ 246 (246)
.+ .+.+.|=|||++++++.+..+
T Consensus 162 ~~------g~~vAVaGGI~~~~i~~~~~~ 184 (217)
T COG0269 162 DL------GAKVAVAGGITPEDIPLFKGI 184 (217)
T ss_pred cc------CceEEEecCCCHHHHHHHhcC
Confidence 54 257999999999999988653
No 39
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=97.67 E-value=0.0016 Score=57.30 Aligned_cols=150 Identities=19% Similarity=0.201 Sum_probs=98.8
Q ss_pred HHHHHHHHcCCCEEEeeeccCcccCCC--CCCHHHHhhcccCCC--CCeeEEEecc-CcccchHHHHhcCCCEEEEccCC
Q 025927 74 EQVKAVELAGCDWIHVDVMDGRFVPNI--TIGPLVVDALRPVTD--LPLDVHLMIV-EPEQRVPDFIKAGADIVSVHCEQ 148 (246)
Q Consensus 74 ~~i~~l~~~g~d~lHiDIMDG~FVpN~--tfgp~~I~~ir~~t~--~plDvHLMV~-~P~~~i~~~~~agad~It~H~E~ 148 (246)
++++.+.++|+|++=+ .|.|+- ...++..+.|.+... +.. |=..+. +|+..++.+.+.+.|.|-+|-..
T Consensus 14 eda~~~~~~Gad~iGf-----I~~~~S~R~V~~~~a~~i~~~~~~~i~~-VgVf~~~~~~~i~~~~~~~~~d~vQLHg~e 87 (210)
T PRK01222 14 EDAEAAAELGADAIGF-----VFYPKSPRYVSPEQAAELAAALPPFVKV-VGVFVNASDEEIDEIVETVPLDLLQLHGDE 87 (210)
T ss_pred HHHHHHHHcCCCEEEE-----ccCCCCCCcCCHHHHHHHHHhCCCCCCE-EEEEeCCCHHHHHHHHHhcCCCEEEECCCC
Confidence 5788888999999988 355542 356777777765432 333 334444 55566666677899999999542
Q ss_pred cccccHHHHHHHHHH-cCCcEEEEEcCCC--ChHHHHHhhhhcceEEEEeecC--CCCCCcccHHHHHHHHHHHHHHHhc
Q 025927 149 SSTIHLHRTLNQIKD-LGAKAGVVLNPAT--SLSAIECVLDVVDLVLIMSVNP--GFGGQSFIESQVKKISDLRRMCLEK 223 (246)
Q Consensus 149 ~~~~~~~~~i~~Ik~-~G~k~GlAlnP~T--pve~l~~~l~~vD~VLvMsV~P--GfgGQ~F~~~~l~KI~~lr~l~~~~ 223 (246)
. ...++.+|+ .++++=-++.... .+..+.++.+.+|++|+=+-.| |-.|..|.-..+. +++
T Consensus 88 ----~-~~~~~~l~~~~~~~iik~i~v~~~~~l~~~~~~~~~~d~~L~Ds~~~~~GGtG~~~dw~~l~-----~~~---- 153 (210)
T PRK01222 88 ----T-PEFCRQLKRRYGLPVIKALRVRSAGDLEAAAAYYGDADGLLLDAYVGLPGGTGKTFDWSLLP-----AGL---- 153 (210)
T ss_pred ----C-HHHHHHHHhhcCCcEEEEEecCCHHHHHHHHhhhccCCEEEEcCCCCCCCCCCCccchHHhh-----hcc----
Confidence 2 234566665 4566655565543 3555555666789999988665 5568888876551 111
Q ss_pred CCCCeEEEeCCCChhhhhhccc
Q 025927 224 GVNPWIEVDGGVGPKNAYKVPN 245 (246)
Q Consensus 224 ~~~~~I~VDGGI~~e~i~~l~~ 245 (246)
...+.+-||++++|+.++++
T Consensus 154 --~~p~~LAGGi~peNv~~ai~ 173 (210)
T PRK01222 154 --AKPWILAGGLNPDNVAEAIR 173 (210)
T ss_pred --CCCEEEECCCCHHHHHHHHH
Confidence 22477899999999988653
No 40
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=97.47 E-value=0.00025 Score=64.71 Aligned_cols=86 Identities=12% Similarity=0.208 Sum_probs=60.8
Q ss_pred ccCCcccccHHHHHHHHHHcCC-cEEEEEcCCCChHHHHHhhhhcceEEEEeecCCCCCCcccHHHHHHHHHHHHHHHhc
Q 025927 145 HCEQSSTIHLHRTLNQIKDLGA-KAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEK 223 (246)
Q Consensus 145 H~E~~~~~~~~~~i~~Ik~~G~-k~GlAlnP~Tpve~l~~~l~~vD~VLvMsV~PGfgGQ~F~~~~l~KI~~lr~l~~~~ 223 (246)
|++. .......++.+|+..- ...+.+.+.|+-+..+.+...+|+|++..+.| +.++++.+++.+.
T Consensus 160 Hi~~--~g~~~~~v~~~r~~~~~~~~I~vev~t~eea~~A~~~gaD~I~ld~~~~------------e~l~~~v~~i~~~ 225 (269)
T cd01568 160 HIAA--AGGITEAVKRARAAAPFEKKIEVEVETLEEAEEALEAGADIIMLDNMSP------------EELKEAVKLLKGL 225 (269)
T ss_pred HHHH--hCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHcCCCEEEECCCCH------------HHHHHHHHHhccC
Confidence 5553 2345567888887754 56688888888777777667899999976555 3344444544433
Q ss_pred CCCCeEEEeCCCChhhhhhccc
Q 025927 224 GVNPWIEVDGGVGPKNAYKVPN 245 (246)
Q Consensus 224 ~~~~~I~VDGGI~~e~i~~l~~ 245 (246)
.+..|++.||||.+|++++.+
T Consensus 226 -~~i~i~asGGIt~~ni~~~a~ 246 (269)
T cd01568 226 -PRVLLEASGGITLENIRAYAE 246 (269)
T ss_pred -CCeEEEEECCCCHHHHHHHHH
Confidence 356899999999999998754
No 41
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=97.40 E-value=0.0036 Score=55.59 Aligned_cols=151 Identities=22% Similarity=0.305 Sum_probs=105.8
Q ss_pred HHHHHHHHcCCCEEEeeeccCcccCC--CCCCHHHHhhcccCCC-CCeeEEEeccCcccchHHH-HhcCCCEEEEccCCc
Q 025927 74 EQVKAVELAGCDWIHVDVMDGRFVPN--ITIGPLVVDALRPVTD-LPLDVHLMIVEPEQRVPDF-IKAGADIVSVHCEQS 149 (246)
Q Consensus 74 ~~i~~l~~~g~d~lHiDIMDG~FVpN--~tfgp~~I~~ir~~t~-~plDvHLMV~~P~~~i~~~-~~agad~It~H~E~~ 149 (246)
++++.+.++|+|++=+ .|+|. =...++..+.|.+... .+ -|=..+..+...+..+ .+.+.|.|=+|-+-
T Consensus 13 eda~~a~~~gad~iG~-----If~~~SpR~Vs~~~a~~i~~~v~~~~-~VgVf~n~~~~~i~~i~~~~~ld~VQlHG~e- 85 (208)
T COG0135 13 EDAKAAAKAGADYIGF-----IFVPKSPRYVSPEQAREIASAVPKVK-VVGVFVNESIEEILEIAEELGLDAVQLHGDE- 85 (208)
T ss_pred HHHHHHHHcCCCEEEE-----EEcCCCCCcCCHHHHHHHHHhCCCCC-EEEEECCCCHHHHHHHHHhcCCCEEEECCCC-
Confidence 5677888899999876 45553 2456677777765322 33 3455666666555555 55689999999752
Q ss_pred ccccHHHHHHHHHHcC-CcEEEEEcCCCC--hHHHHHhhhhcceEEEEee---cCCCCCCcccHHHHHHHHHHHHHHHhc
Q 025927 150 STIHLHRTLNQIKDLG-AKAGVVLNPATS--LSAIECVLDVVDLVLIMSV---NPGFGGQSFIESQVKKISDLRRMCLEK 223 (246)
Q Consensus 150 ~~~~~~~~i~~Ik~~G-~k~GlAlnP~Tp--ve~l~~~l~~vD~VLvMsV---~PGfgGQ~F~~~~l~KI~~lr~l~~~~ 223 (246)
+ ...++++|+.+ +++--|++.... .+....+...+|.+|+=+= .+|-.||.|.-+.+.+.+
T Consensus 86 ---~-~~~~~~l~~~~~~~v~kai~v~~~~~~~~~~~~~~~~d~~LlDa~~~~~~GGtG~~fDW~~l~~~~--------- 152 (208)
T COG0135 86 ---D-PEYIDQLKEELGVPVIKAISVSEEGDLELAAREEGPVDAILLDAKVPGLPGGTGQTFDWNLLPKLR--------- 152 (208)
T ss_pred ---C-HHHHHHHHhhcCCceEEEEEeCCccchhhhhhccCCccEEEEcCCCCCCCCCCCcEECHHHhcccc---------
Confidence 2 24677777654 777777766644 6777777889999999886 368899999998887651
Q ss_pred CCCCeEEEeCCCChhhhhhccc
Q 025927 224 GVNPWIEVDGGVGPKNAYKVPN 245 (246)
Q Consensus 224 ~~~~~I~VDGGI~~e~i~~l~~ 245 (246)
....+.+=||+|++|+.+.++
T Consensus 153 -~~~~~~LAGGL~p~NV~~ai~ 173 (208)
T COG0135 153 -LSKPVMLAGGLNPDNVAEAIA 173 (208)
T ss_pred -ccCCEEEECCCCHHHHHHHHH
Confidence 112477899999999988654
No 42
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=97.34 E-value=0.0014 Score=56.91 Aligned_cols=151 Identities=19% Similarity=0.276 Sum_probs=97.4
Q ss_pred HHHHHHHHcCCCEEEeeeccCcccCC--CCCCHHHHhhcccCCCCCeeEEEeccCccc-chHHHHhcCCCEEEEccCCcc
Q 025927 74 EQVKAVELAGCDWIHVDVMDGRFVPN--ITIGPLVVDALRPVTDLPLDVHLMIVEPEQ-RVPDFIKAGADIVSVHCEQSS 150 (246)
Q Consensus 74 ~~i~~l~~~g~d~lHiDIMDG~FVpN--~tfgp~~I~~ir~~t~~plDvHLMV~~P~~-~i~~~~~agad~It~H~E~~~ 150 (246)
++++.+.+.|+|++=+- |.|+ -...++..+.|.+... +.-|=+++..+.. .++.+.+++.|+|=+|-+.
T Consensus 10 ~da~~~~~~g~d~~Gfi-----~~~~S~R~v~~~~a~~l~~~~~-~~~VgVf~~~~~~~I~~~~~~~~ld~vQLHG~e-- 81 (197)
T PF00697_consen 10 EDARLAAELGADYLGFI-----FYPKSPRYVSPDQARELVSAVP-PKIVGVFVNQSPEEILEIVEELGLDVVQLHGDE-- 81 (197)
T ss_dssp HHHHHHHHHTSSEEEEE-------TTCTTB--HHHHHHHHCCSS-SSEEEEESSS-HHHHHHHHHHCTESEEEE-SGG--
T ss_pred HHHHHHHHcCCCEEeee-----cCCCCCCccCHHHHHHHHHhcC-CCEEEEEcCCCHHHHHHHHHHcCCCEEEECCCC--
Confidence 67888889999999984 3344 2567888888876544 3356677776665 4555566889999999662
Q ss_pred cccHHHHHHHHHHcCCcEEEEEcCCCCh---HHHHHhhhhcceEEEEeecCCCCCCcccHHHHHHHHHHHHHHHhcCCCC
Q 025927 151 TIHLHRTLNQIKDLGAKAGVVLNPATSL---SAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNP 227 (246)
Q Consensus 151 ~~~~~~~i~~Ik~~G~k~GlAlnP~Tpv---e~l~~~l~~vD~VLvMsV~PGfgGQ~F~~~~l~KI~~lr~l~~~~~~~~ 227 (246)
....++.++ .++++--++...... +.+..+ ..+|++|+= -..|-.|+.|.-+.+.++.+... ..
T Consensus 82 ---~~e~~~~l~-~~~~vi~~~~v~~~~~~~~~~~~~-~~~d~~LlD-~~~GgtG~~~dw~~~~~~~~~~~-------~~ 148 (197)
T PF00697_consen 82 ---SPEYIKLLR-AGLPVIKAIHVDKDIDLLDYLERY-ESVDYFLLD-SGSGGTGKTFDWSLLKKIVESYS-------PK 148 (197)
T ss_dssp ----HHHHHHHH-TTSEEEEEEEESSCHSCCHHCHCS-TT-SEEEEE-SSSTSSSS---GGGGCCCHHT-G-------TS
T ss_pred ---CHHHHHHhh-cCceEEEEEEeCCccchHHHHHhc-ccccEEeEc-cCCCcCCcccCHHHhhhhhhhcc-------cC
Confidence 334555655 578888888888744 344333 344998877 44677899999999887765322 23
Q ss_pred eEEEeCCCChhhhhhccc
Q 025927 228 WIEVDGGVGPKNAYKVPN 245 (246)
Q Consensus 228 ~I~VDGGI~~e~i~~l~~ 245 (246)
.+.+=||+|++|+.+.++
T Consensus 149 p~iLAGGl~p~NV~~ai~ 166 (197)
T PF00697_consen 149 PVILAGGLNPENVREAIR 166 (197)
T ss_dssp TEEEESS--TTTHHHHHH
T ss_pred cEEEEcCCChHHHHHHHH
Confidence 578899999999988753
No 43
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=97.26 E-value=0.01 Score=53.45 Aligned_cols=157 Identities=11% Similarity=0.058 Sum_probs=103.7
Q ss_pred HHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEEEccCCccccc
Q 025927 74 EQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIH 153 (246)
Q Consensus 74 ~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It~H~E~~~~~~ 153 (246)
+.++..++.|.+|+|++..||.+ .-.-..++|+++.+.+..|+.+===+.+. ..++.+.++|++.|.+=-++. .+
T Consensus 35 ~~a~~~~~~g~~~lhivDLd~a~--g~~~n~~~i~~i~~~~~~~v~vgGGIrs~-e~~~~~l~~Ga~~vvigT~a~--~~ 109 (243)
T TIGR01919 35 SAAKWWEQGGAEWIHLVDLDAAF--GGGNNEMMLEEVVKLLVVVEELSGGRRDD-SSLRAALTGGRARVNGGTAAL--EN 109 (243)
T ss_pred HHHHHHHhCCCeEEEEEECCCCC--CCcchHHHHHHHHHHCCCCEEEcCCCCCH-HHHHHHHHcCCCEEEECchhh--CC
Confidence 55677788999999999999987 44455678999887666554443334443 346678889999999977753 45
Q ss_pred HHHHHHHHHHcCCcEEEEEcCC---------------CCh---HHHHHhhhh-cceEEEEeecCCCCCCcccHHHHHHHH
Q 025927 154 LHRTLNQIKDLGAKAGVVLNPA---------------TSL---SAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKIS 214 (246)
Q Consensus 154 ~~~~i~~Ik~~G~k~GlAlnP~---------------Tpv---e~l~~~l~~-vD~VLvMsV~PGfgGQ~F~~~~l~KI~ 214 (246)
+.-+-+.+++.|-++-++|.-. |.+ +.++.+-+. +.-++++.|+---..+-++-+.+++++
T Consensus 110 p~~~~~~~~~~g~~ivvslD~k~~g~~~~v~~~Gw~~~~~~~~~~~~~~~~~g~~~ii~tdI~~dGt~~G~d~~l~~~l~ 189 (243)
T TIGR01919 110 PWWAAAVIRYGGDIVAVGLDVLEDGEWHTLGNRGWSDGGGDLEVLERLLDSGGCSRVVVTDSKKDGLSGGPNELLLEVVA 189 (243)
T ss_pred HHHHHHHHHHccccEEEEEEEecCCceEEEECCCeecCCCcHHHHHHHHHhCCCCEEEEEecCCcccCCCcCHHHHHHHH
Confidence 5544555566665544444321 222 333333222 578999999987777888888777665
Q ss_pred HHHHHHHhcCCCCeEEEeCCCCh-hhhhhc
Q 025927 215 DLRRMCLEKGVNPWIEVDGGVGP-KNAYKV 243 (246)
Q Consensus 215 ~lr~l~~~~~~~~~I~VDGGI~~-e~i~~l 243 (246)
+. . +..+.+=||++. +.+.++
T Consensus 190 ~~---~-----~~pviasGGv~s~eDl~~l 211 (243)
T TIGR01919 190 AR---T-----DAIVAASGGSSLLDDLRAI 211 (243)
T ss_pred hh---C-----CCCEEEECCcCCHHHHHHH
Confidence 42 1 346788899975 455543
No 44
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=97.18 E-value=0.019 Score=51.02 Aligned_cols=163 Identities=13% Similarity=0.108 Sum_probs=109.2
Q ss_pred cccChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEEE
Q 025927 65 LSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSV 144 (246)
Q Consensus 65 l~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It~ 144 (246)
+..|+..+ .+.+++.|+|++|+==.|+.. .-.-..+.+++|.+.+..|+.+===+... ..++.+..+||+.+.+
T Consensus 33 ~~~dp~~~---a~~~~~~g~~~l~i~DLd~~~--~~~~n~~~i~~i~~~~~~~v~vgGGir~~-edv~~~l~~Ga~~vii 106 (233)
T cd04723 33 STSDPLDV---ARAYKELGFRGLYIADLDAIM--GRGDNDEAIRELAAAWPLGLWVDGGIRSL-ENAQEWLKRGASRVIV 106 (233)
T ss_pred cCCCHHHH---HHHHHHCCCCEEEEEeCcccc--CCCccHHHHHHHHHhCCCCEEEecCcCCH-HHHHHHHHcCCCeEEE
Confidence 34455554 566678899999974446643 44455678888877666665554445453 4467888899999999
Q ss_pred ccCCcccccHHHHHHHHHHcCC-cEEEEEcCC-----------CChHHHHHhhhhcceEEEEeecCCCCCCcccHHHHHH
Q 025927 145 HCEQSSTIHLHRTLNQIKDLGA-KAGVVLNPA-----------TSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKK 212 (246)
Q Consensus 145 H~E~~~~~~~~~~i~~Ik~~G~-k~GlAlnP~-----------Tpve~l~~~l~~vD~VLvMsV~PGfgGQ~F~~~~l~K 212 (246)
=-|+. .+ .-+-+.+++.|- ++-++|... ++.+.++.+-..++.++++.++--..++..+-+.+++
T Consensus 107 gt~~~--~~-~~~~~~~~~~~~~~iivslD~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~di~~~G~~~g~~~~~~~~ 183 (233)
T cd04723 107 GTETL--PS-DDDEDRLAALGEQRLVLSLDFRGGQLLKPTDFIGPEELLRRLAKWPEELIVLDIDRVGSGQGPDLELLER 183 (233)
T ss_pred cceec--cc-hHHHHHHHhcCCCCeEEEEeccCCeeccccCcCCHHHHHHHHHHhCCeEEEEEcCccccCCCcCHHHHHH
Confidence 88864 33 334444566666 666777642 3556666665568999999999866777777777766
Q ss_pred HHHHHHHHHhcCCCCeEEEeCCCCh-hhhhhcc
Q 025927 213 ISDLRRMCLEKGVNPWIEVDGGVGP-KNAYKVP 244 (246)
Q Consensus 213 I~~lr~l~~~~~~~~~I~VDGGI~~-e~i~~l~ 244 (246)
+.+. .+..+++=|||+. +.+.++.
T Consensus 184 i~~~--------~~ipvi~~GGi~s~edi~~l~ 208 (233)
T cd04723 184 LAAR--------ADIPVIAAGGVRSVEDLELLK 208 (233)
T ss_pred HHHh--------cCCCEEEeCCCCCHHHHHHHH
Confidence 6542 1346889999975 5555443
No 45
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=97.17 E-value=0.01 Score=52.19 Aligned_cols=150 Identities=17% Similarity=0.151 Sum_probs=96.7
Q ss_pred HHHHHHHHcCCCEEEeeeccCcccCCC--CCCHHHHhhcccCCCCCe-eEEEeccCcccchHHH-HhcCCCEEEEccCCc
Q 025927 74 EQVKAVELAGCDWIHVDVMDGRFVPNI--TIGPLVVDALRPVTDLPL-DVHLMIVEPEQRVPDF-IKAGADIVSVHCEQS 149 (246)
Q Consensus 74 ~~i~~l~~~g~d~lHiDIMDG~FVpN~--tfgp~~I~~ir~~t~~pl-DvHLMV~~P~~~i~~~-~~agad~It~H~E~~ 149 (246)
++++.+.++|+|++=+ .|.|+- ...++..++|.+...-.+ -|=+.+..+...+..+ ...|.|++-+|-+.
T Consensus 12 eda~~~~~~GaD~iGf-----If~~~SpR~V~~~~a~~i~~~~~~~~~~VgVf~~~~~~~i~~~~~~~~~d~vQLHG~e- 85 (207)
T PRK13958 12 KDVTAASQLPIDAIGF-----IHYEKSKRHQTITQIKKLASAVPNHIDKVCVVVNPDLTTIEHILSNTSINTIQLHGTE- 85 (207)
T ss_pred HHHHHHHHcCCCEEEE-----ecCCCCcccCCHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHhCCCCEEEECCCC-
Confidence 6677888999999998 365653 366777787765322111 2556666555445444 56899999999762
Q ss_pred ccccHHHHHHHHHHc--CCcEEEEEcCCC-ChHHHHHhhhhcceEEEEeecC--CCCCCcccHHHHHHHHHHHHHHHhcC
Q 025927 150 STIHLHRTLNQIKDL--GAKAGVVLNPAT-SLSAIECVLDVVDLVLIMSVNP--GFGGQSFIESQVKKISDLRRMCLEKG 224 (246)
Q Consensus 150 ~~~~~~~~i~~Ik~~--G~k~GlAlnP~T-pve~l~~~l~~vD~VLvMsV~P--GfgGQ~F~~~~l~KI~~lr~l~~~~~ 224 (246)
. ...++.+|+. ++++=-+++.+. .++.+.+|.+.+|++|+=+..+ |-.|+.|.-+.+.++ . .
T Consensus 86 ---~-~~~~~~l~~~~~~~~iika~~~~~~~~~~~~~~~~~~d~~LlDs~~~~~GGtG~~~dw~~~~~~------~-~-- 152 (207)
T PRK13958 86 ---S-IDFIQEIKKKYSSIKIIKALPADENIIQNINKYKGFVDLFIIDTPSVSYGGTGQTYDWTILKHI------K-D-- 152 (207)
T ss_pred ---C-HHHHHHHhhcCCCceEEEEecccHHHHHHHHHHHhhCCEEEEcCCCCCCCcCCcEeChHHhhhc------c-C--
Confidence 2 2356667754 356655665532 2334555656689999988533 445788987666432 1 1
Q ss_pred CCCeEEEeCCCChhhhhhcc
Q 025927 225 VNPWIEVDGGVGPKNAYKVP 244 (246)
Q Consensus 225 ~~~~I~VDGGI~~e~i~~l~ 244 (246)
..+.+=||+|++|+.++.
T Consensus 153 --~p~iLAGGL~peNV~~a~ 170 (207)
T PRK13958 153 --IPYLIAGGINSENIQTVE 170 (207)
T ss_pred --CCEEEECCCCHHHHHHHH
Confidence 236689999999998754
No 46
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=97.16 E-value=0.011 Score=51.62 Aligned_cols=166 Identities=19% Similarity=0.217 Sum_probs=97.2
Q ss_pred CcEEeeeecccChh----hHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeE----EE-----e
Q 025927 57 DIIVSPSILSANFA----KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDV----HL-----M 123 (246)
Q Consensus 57 ~~~IsPSIl~aD~~----~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDv----HL-----M 123 (246)
-+++|--..+.++. ...+..+.+.++|+..+=+ =+++.++.+|+.+++|+-. |+ .
T Consensus 10 ~~~~~~~~~~~~~~~~~~~i~~~a~~~~~~G~~~~~~------------~~~~~~~~i~~~~~iPil~~~~~~~~~~~~~ 77 (219)
T cd04729 10 GLIVSCQALPGEPLHSPEIMAAMALAAVQGGAVGIRA------------NGVEDIRAIRARVDLPIIGLIKRDYPDSEVY 77 (219)
T ss_pred CeEEEccCCCCCCcCcHHHHHHHHHHHHHCCCeEEEc------------CCHHHHHHHHHhCCCCEEEEEecCCCCCCce
Confidence 45555555554444 4677778888999876432 2246888888877888742 21 1
Q ss_pred ccCcccchHHHHhcCCCEEEEccCCc---ccccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhh-hcceEEEEeecC-
Q 025927 124 IVEPEQRVPDFIKAGADIVSVHCEQS---STIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNP- 198 (246)
Q Consensus 124 V~~P~~~i~~~~~agad~It~H~E~~---~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~-~vD~VLvMsV~P- 198 (246)
+..-...++...++|++.|.+-.-.. ....+.++++.++++| ..=+...+.|+ +......+ -+|+|. +++
T Consensus 78 ig~~~~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g-~~~iiv~v~t~-~ea~~a~~~G~d~i~---~~~~ 152 (219)
T cd04729 78 ITPTIEEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEY-NCLLMADISTL-EEALNAAKLGFDIIG---TTLS 152 (219)
T ss_pred eCCCHHHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHh-CCeEEEECCCH-HHHHHHHHcCCCEEE---ccCc
Confidence 11111267888899999888742110 0125678999999998 33333344444 44444333 377763 322
Q ss_pred CCCCCc--ccHHHHHHHHHHHHHHHhcCCCCeEEEeCCC-Chhhhhhcc
Q 025927 199 GFGGQS--FIESQVKKISDLRRMCLEKGVNPWIEVDGGV-GPKNAYKVP 244 (246)
Q Consensus 199 GfgGQ~--F~~~~l~KI~~lr~l~~~~~~~~~I~VDGGI-~~e~i~~l~ 244 (246)
|+.++. .....++-++++++.. +..+.+.||| +.+++.++.
T Consensus 153 g~t~~~~~~~~~~~~~l~~i~~~~-----~ipvia~GGI~~~~~~~~~l 196 (219)
T cd04729 153 GYTEETAKTEDPDFELLKELRKAL-----GIPVIAEGRINSPEQAAKAL 196 (219)
T ss_pred cccccccCCCCCCHHHHHHHHHhc-----CCCEEEeCCCCCHHHHHHHH
Confidence 443322 1122344555555543 3568899999 688888764
No 47
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=97.16 E-value=0.018 Score=50.34 Aligned_cols=162 Identities=18% Similarity=0.174 Sum_probs=96.6
Q ss_pred hHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEEEccCCcc
Q 025927 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS 150 (246)
Q Consensus 71 ~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It~H~E~~~ 150 (246)
+..+.++.+++.|++++|+==.||.+-. -.-..+.++++++.+++|+-+==-+.+.++ ++.+.++||+.+.+=.+..
T Consensus 31 ~~~~~a~~~~~~g~~~i~v~dld~~~~g-~~~~~~~i~~i~~~~~~pv~~~GGI~~~ed-~~~~~~~Ga~~vilg~~~l- 107 (233)
T PRK00748 31 DPVAQAKAWEDQGAKWLHLVDLDGAKAG-KPVNLELIEAIVKAVDIPVQVGGGIRSLET-VEALLDAGVSRVIIGTAAV- 107 (233)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCccccC-CcccHHHHHHHHHHCCCCEEEcCCcCCHHH-HHHHHHcCCCEEEECchHH-
Confidence 4445566778899999998666887643 223467888888877777555334444443 5677888999998766542
Q ss_pred cccHHHHHHHHHHcCCcEEEEEcC---------------CCChHHHHHhhh-hcceEEEEeecCCCCCCcccHHHHHHHH
Q 025927 151 TIHLHRTLNQIKDLGAKAGVVLNP---------------ATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKIS 214 (246)
Q Consensus 151 ~~~~~~~i~~Ik~~G~k~GlAlnP---------------~Tpve~l~~~l~-~vD~VLvMsV~PGfgGQ~F~~~~l~KI~ 214 (246)
.++..+.+.+++.+-+.-+.++. ..+.+..+.+.+ -+|.|+++.+...-..+..+-+.+++++
T Consensus 108 -~~~~~l~ei~~~~~~~i~vsid~k~~~v~~~g~~~~~~~~~~e~~~~~~~~g~~~ii~~~~~~~g~~~G~d~~~i~~l~ 186 (233)
T PRK00748 108 -KNPELVKEACKKFPGKIVVGLDARDGKVATDGWLETSGVTAEDLAKRFEDAGVKAIIYTDISRDGTLSGPNVEATRELA 186 (233)
T ss_pred -hCHHHHHHHHHHhCCCceeeeeccCCEEEEccCeecCCCCHHHHHHHHHhcCCCEEEEeeecCcCCcCCCCHHHHHHHH
Confidence 33333333334433334444432 123444444444 2899999999885444445555555444
Q ss_pred HHHHHHHhcCCCCeEEEeCCCCh-hhhhhcc
Q 025927 215 DLRRMCLEKGVNPWIEVDGGVGP-KNAYKVP 244 (246)
Q Consensus 215 ~lr~l~~~~~~~~~I~VDGGI~~-e~i~~l~ 244 (246)
+.. +..+.+=|||+. +.+.++.
T Consensus 187 ---~~~-----~ipvia~GGi~~~~di~~~~ 209 (233)
T PRK00748 187 ---AAV-----PIPVIASGGVSSLDDIKALK 209 (233)
T ss_pred ---HhC-----CCCEEEeCCCCCHHHHHHHH
Confidence 332 245778899864 4555543
No 48
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=97.11 E-value=0.016 Score=52.65 Aligned_cols=161 Identities=20% Similarity=0.216 Sum_probs=106.1
Q ss_pred hhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEEEccCCc
Q 025927 70 AKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS 149 (246)
Q Consensus 70 ~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It~H~E~~ 149 (246)
....+..+..+++|++.+=+ ..|..| +.=+.+.++.+|+.+++|+-..=.+.+|. .++...++|||.|++-....
T Consensus 70 ~~~~~~A~~~~~~GA~aisv-lte~~~---f~g~~~~l~~v~~~v~iPvl~kdfi~~~~-qi~~a~~~GAD~VlLi~~~l 144 (260)
T PRK00278 70 FDPVEIAKAYEAGGAACLSV-LTDERF---FQGSLEYLRAARAAVSLPVLRKDFIIDPY-QIYEARAAGADAILLIVAAL 144 (260)
T ss_pred CCHHHHHHHHHhCCCeEEEE-eccccc---CCCCHHHHHHHHHhcCCCEEeeeecCCHH-HHHHHHHcCCCEEEEEeccC
Confidence 35567778889999999833 233333 33458899999998899988777777777 58888999999999998764
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhh-hcceEEEEeecCCCCCCcccHHHHHHHHHHHHHHHhcCCCCe
Q 025927 150 STIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPW 228 (246)
Q Consensus 150 ~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~-~vD~VLvMsV~PGfgGQ~F~~~~l~KI~~lr~l~~~~~~~~~ 228 (246)
....+.++++.+++.|+.+=+=+. ..++++...+ .+|+|- +++ ..=+.|.+. ++...++.+.+++ ..+.
T Consensus 145 ~~~~l~~li~~a~~lGl~~lvevh---~~~E~~~A~~~gadiIg---in~-rdl~~~~~d-~~~~~~l~~~~p~--~~~v 214 (260)
T PRK00278 145 DDEQLKELLDYAHSLGLDVLVEVH---DEEELERALKLGAPLIG---INN-RNLKTFEVD-LETTERLAPLIPS--DRLV 214 (260)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEeC---CHHHHHHHHHcCCCEEE---ECC-CCcccccCC-HHHHHHHHHhCCC--CCEE
Confidence 334688999999999876655444 3334444333 467554 342 222345444 5556666655432 1134
Q ss_pred EEEeCCCChhhhhhccc
Q 025927 229 IEVDGGVGPKNAYKVPN 245 (246)
Q Consensus 229 I~VDGGI~~e~i~~l~~ 245 (246)
|..=|+.+.++++.+.+
T Consensus 215 IaegGI~t~ed~~~~~~ 231 (260)
T PRK00278 215 VSESGIFTPEDLKRLAK 231 (260)
T ss_pred EEEeCCCCHHHHHHHHH
Confidence 55444447999988754
No 49
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=96.98 E-value=0.0099 Score=52.50 Aligned_cols=155 Identities=23% Similarity=0.295 Sum_probs=81.8
Q ss_pred HHHHHHHHcCCCEEEe--eeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCccc---------------chHHHHh
Q 025927 74 EQVKAVELAGCDWIHV--DVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQ---------------RVPDFIK 136 (246)
Q Consensus 74 ~~i~~l~~~g~d~lHi--DIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~---------------~i~~~~~ 136 (246)
+.+...++.|+|.|.+ +...|=..|+ ..+++.+++..++ .+|.|+. |.. -|+.+.+
T Consensus 11 ~~a~~A~~~GAdRiELc~~l~~GGlTPS----~g~i~~~~~~~~i--pv~vMIR-pr~gdF~Ys~~E~~~M~~dI~~~~~ 83 (201)
T PF03932_consen 11 EDALAAEAGGADRIELCSNLEVGGLTPS----LGLIRQAREAVDI--PVHVMIR-PRGGDFVYSDEEIEIMKEDIRMLRE 83 (201)
T ss_dssp HHHHHHHHTT-SEEEEEBTGGGT-B-------HHHHHHHHHHTTS--EEEEE---SSSS-S---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEECCCccCCCcCcC----HHHHHHHHhhcCC--ceEEEEC-CCCCCccCCHHHHHHHHHHHHHHHH
Confidence 4455667899999997 4566667776 5678888875454 5888986 532 2667888
Q ss_pred cCCCEEEEccCC-cccccHHHHHHHHHHcCCcEEEEEcCC-----CChHHHHHhhh-hcceEEEEeecCCCCCCcccHHH
Q 025927 137 AGADIVSVHCEQ-SSTIHLHRTLNQIKDLGAKAGVVLNPA-----TSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQ 209 (246)
Q Consensus 137 agad~It~H~E~-~~~~~~~~~i~~Ik~~G~k~GlAlnP~-----Tpve~l~~~l~-~vD~VLvMsV~PGfgGQ~F~~~~ 209 (246)
+|+|-+-|=+=. ....|..++-+.+...+ ..-++++-. .+.+.++.+++ -+|.|| |- ||..=..+-
T Consensus 84 ~GadG~VfG~L~~dg~iD~~~~~~Li~~a~-~~~~tFHRAfD~~~d~~~al~~L~~lG~~rVL--TS----Gg~~~a~~g 156 (201)
T PF03932_consen 84 LGADGFVFGALTEDGEIDEEALEELIEAAG-GMPVTFHRAFDEVPDPEEALEQLIELGFDRVL--TS----GGAPTALEG 156 (201)
T ss_dssp TT-SEEEE--BETTSSB-HHHHHHHHHHHT-TSEEEE-GGGGGSSTHHHHHHHHHHHT-SEEE--ES----TTSSSTTTC
T ss_pred cCCCeeEEEeECCCCCcCHHHHHHHHHhcC-CCeEEEeCcHHHhCCHHHHHHHHHhcCCCEEE--CC----CCCCCHHHH
Confidence 999988876411 01234333333333333 333344322 23345555544 366554 32 333333344
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEeCCCChhhhhhccc
Q 025927 210 VKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVPN 245 (246)
Q Consensus 210 l~KI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~l~~ 245 (246)
++.++++.+ ..+-.+.|.+=||||.+|++.+.+
T Consensus 157 ~~~L~~lv~---~a~~~i~Im~GgGv~~~nv~~l~~ 189 (201)
T PF03932_consen 157 IENLKELVE---QAKGRIEIMPGGGVRAENVPELVE 189 (201)
T ss_dssp HHHHHHHHH---HHTTSSEEEEESS--TTTHHHHHH
T ss_pred HHHHHHHHH---HcCCCcEEEecCCCCHHHHHHHHH
Confidence 555555444 444457899999999999998864
No 50
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.96 E-value=0.028 Score=49.50 Aligned_cols=161 Identities=15% Similarity=0.142 Sum_probs=94.8
Q ss_pred HHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEEEccCCccc
Q 025927 72 LGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 151 (246)
Q Consensus 72 l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It~H~E~~~~ 151 (246)
..+.++.+.+.|++++|+==-|+.. ....-....++++.+.++.|+.+|==+.++++ ++.+.++||+.|.+=.+. .
T Consensus 34 ~~e~a~~~~~~G~~~l~i~dl~~~~-~~~~~~~~~i~~i~~~~~~~l~v~GGi~~~~~-~~~~~~~Ga~~v~iGs~~--~ 109 (241)
T PRK13585 34 PVEVAKRWVDAGAETLHLVDLDGAF-EGERKNAEAIEKIIEAVGVPVQLGGGIRSAED-AASLLDLGVDRVILGTAA--V 109 (241)
T ss_pred HHHHHHHHHHcCCCEEEEEechhhh-cCCcccHHHHHHHHHHcCCcEEEcCCcCCHHH-HHHHHHcCCCEEEEChHH--h
Confidence 4455666788999999985555433 12222356788887766677666655566544 566778999998776553 3
Q ss_pred ccHHHHHHHHHHcCC-c--EEEEEc----------C--C-CChHHHHHhhh-hcceEEEEeecCCCCCCcccHHHHHHHH
Q 025927 152 IHLHRTLNQIKDLGA-K--AGVVLN----------P--A-TSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKIS 214 (246)
Q Consensus 152 ~~~~~~i~~Ik~~G~-k--~GlAln----------P--~-Tpve~l~~~l~-~vD~VLvMsV~PGfgGQ~F~~~~l~KI~ 214 (246)
.++..+.+..+..|- + +++-+. . + .+++..+.+.+ -+|.|++..+.+.-..+...-+.+ +
T Consensus 110 ~~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~G~~~i~~~~~~~~g~~~g~~~~~i---~ 186 (241)
T PRK13585 110 ENPEIVRELSEEFGSERVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEELGAGSILFTNVDVEGLLEGVNTEPV---K 186 (241)
T ss_pred hChHHHHHHHHHhCCCcEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEEeecCCCCcCCCCHHHH---H
Confidence 345444444445442 2 344332 1 1 33444444433 379999999876422222333333 3
Q ss_pred HHHHHHHhcCCCCeEEEeCCCC-hhhhhhcc
Q 025927 215 DLRRMCLEKGVNPWIEVDGGVG-PKNAYKVP 244 (246)
Q Consensus 215 ~lr~l~~~~~~~~~I~VDGGI~-~e~i~~l~ 244 (246)
++++.. +..+.+=|||+ .+.+.++.
T Consensus 187 ~i~~~~-----~iPvia~GGI~~~~di~~~~ 212 (241)
T PRK13585 187 ELVDSV-----DIPVIASGGVTTLDDLRALK 212 (241)
T ss_pred HHHHhC-----CCCEEEeCCCCCHHHHHHHH
Confidence 333332 35688999999 77877654
No 51
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=96.88 E-value=0.026 Score=48.46 Aligned_cols=155 Identities=17% Similarity=0.144 Sum_probs=98.1
Q ss_pred EeeeecccChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCC-CCeeEEEeccCcccchHHHHhcC
Q 025927 60 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTD-LPLDVHLMIVEPEQRVPDFIKAG 138 (246)
Q Consensus 60 IsPSIl~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~-~plDvHLMV~~P~~~i~~~~~ag 138 (246)
+-|=+=..|..++.+.++.+.++|++++-++.-+.. ..+.++.+++..+ ..+-+.... ++ ..++...++|
T Consensus 6 ~~~i~r~~~~~~~~~~~~~l~~~G~~~vev~~~~~~-------~~~~i~~l~~~~~~~~iGag~v~-~~-~~~~~a~~~G 76 (190)
T cd00452 6 LVAVLRGDDAEDALALAEALIEGGIRAIEITLRTPG-------ALEAIRALRKEFPEALIGAGTVL-TP-EQADAAIAAG 76 (190)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCChh-------HHHHHHHHHHHCCCCEEEEEeCC-CH-HHHHHHHHcC
Confidence 444455567888888999999999999999977653 3447888877533 333433333 22 3478889999
Q ss_pred CCEEEEccCCcccccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhh-hcceEEEEeecCCCCCCcccHHHHHHHHHHH
Q 025927 139 ADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLR 217 (246)
Q Consensus 139 ad~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~-~vD~VLvMsV~PGfgGQ~F~~~~l~KI~~lr 217 (246)
++.|..... + ..+++..|++|++. .+...|+ +++...++ -+|+|.+ .| ..+.-++. ++.++
T Consensus 77 a~~i~~p~~-----~-~~~~~~~~~~~~~~--i~gv~t~-~e~~~A~~~Gad~i~~---~p---~~~~g~~~---~~~l~ 138 (190)
T cd00452 77 AQFIVSPGL-----D-PEVVKAANRAGIPL--LPGVATP-TEIMQALELGADIVKL---FP---AEAVGPAY---IKALK 138 (190)
T ss_pred CCEEEcCCC-----C-HHHHHHHHHcCCcE--ECCcCCH-HHHHHHHHCCCCEEEE---cC---CcccCHHH---HHHHH
Confidence 999864322 1 34677778777653 2333344 44544443 4899987 23 11222333 34444
Q ss_pred HHHHhcCCCCeEEEeCCCChhhhhhccc
Q 025927 218 RMCLEKGVNPWIEVDGGVGPKNAYKVPN 245 (246)
Q Consensus 218 ~l~~~~~~~~~I~VDGGI~~e~i~~l~~ 245 (246)
+..+ +..+.+=||||.+|+.++.+
T Consensus 139 ~~~~----~~p~~a~GGI~~~n~~~~~~ 162 (190)
T cd00452 139 GPFP----QVRFMPTGGVSLDNAAEWLA 162 (190)
T ss_pred hhCC----CCeEEEeCCCCHHHHHHHHH
Confidence 3332 25688999999999988764
No 52
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=96.85 E-value=0.023 Score=52.82 Aligned_cols=118 Identities=17% Similarity=0.252 Sum_probs=80.3
Q ss_pred HHhhcccCCCCCeeEEEeccCcc--cchHHHHhcCCCEEEEccCCcccccHHHHHHHHHHcCCcEEEEEcCCCChHHHHH
Q 025927 106 VVDALRPVTDLPLDVHLMIVEPE--QRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIEC 183 (246)
Q Consensus 106 ~I~~ir~~t~~plDvHLMV~~P~--~~i~~~~~agad~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~ 183 (246)
.|+++|+.|+.|+-+.+++..|. ..++.+.+.|++.|.++.- .+.++++++|+.|+++-.- -++++..+.
T Consensus 53 ~i~~~~~~t~~pfgvn~~~~~~~~~~~~~~~~~~~v~~v~~~~g-----~p~~~i~~lk~~g~~v~~~---v~s~~~a~~ 124 (307)
T TIGR03151 53 EIRKVKELTDKPFGVNIMLLSPFVDELVDLVIEEKVPVVTTGAG-----NPGKYIPRLKENGVKVIPV---VASVALAKR 124 (307)
T ss_pred HHHHHHHhcCCCcEEeeecCCCCHHHHHHHHHhCCCCEEEEcCC-----CcHHHHHHHHHcCCEEEEE---cCCHHHHHH
Confidence 35666777888998988886665 5667778899999999753 3456899999999776322 255666655
Q ss_pred hhh-hcceEEEEeecCCC-CCCcccHHHHHHHHHHHHHHHhcCCCCeEEEeCCCChhh
Q 025927 184 VLD-VVDLVLIMSVNPGF-GGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKN 239 (246)
Q Consensus 184 ~l~-~vD~VLvMsV~PGf-gGQ~F~~~~l~KI~~lr~l~~~~~~~~~I~VDGGI~~e~ 239 (246)
..+ -+|.|.+-..+.|. .|+. ..+.-++++++.. +..|.+.|||+...
T Consensus 125 a~~~GaD~Ivv~g~eagGh~g~~---~~~~ll~~v~~~~-----~iPviaaGGI~~~~ 174 (307)
T TIGR03151 125 MEKAGADAVIAEGMESGGHIGEL---TTMALVPQVVDAV-----SIPVIAAGGIADGR 174 (307)
T ss_pred HHHcCCCEEEEECcccCCCCCCC---cHHHHHHHHHHHh-----CCCEEEECCCCCHH
Confidence 544 49999998887753 3432 2344444444332 35688999997543
No 53
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=96.82 E-value=0.072 Score=47.08 Aligned_cols=161 Identities=20% Similarity=0.152 Sum_probs=96.5
Q ss_pred hHHHHHHHHHHcCCCEEEeeeccCc-ccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEEEccCCc
Q 025927 71 KLGEQVKAVELAGCDWIHVDVMDGR-FVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS 149 (246)
Q Consensus 71 ~l~~~i~~l~~~g~d~lHiDIMDG~-FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It~H~E~~ 149 (246)
+..+.++.+++.|++++|+==.|+. ..+ ....+.++++++.+++|+-+==-+.+++. ++.+.+.|++.+.+=-+.
T Consensus 28 d~~~~a~~~~~~G~~~i~i~d~~~~~~~~--~~~~~~i~~i~~~~~~pv~~~GGI~s~~d-~~~~l~~G~~~v~ig~~~- 103 (243)
T cd04731 28 DPVELAKRYNEQGADELVFLDITASSEGR--ETMLDVVERVAEEVFIPLTVGGGIRSLED-ARRLLRAGADKVSINSAA- 103 (243)
T ss_pred CHHHHHHHHHHCCCCEEEEEcCCcccccC--cccHHHHHHHHHhCCCCEEEeCCCCCHHH-HHHHHHcCCceEEECchh-
Confidence 4445567788899998876333321 122 33567888898877777665555556554 456677899998886553
Q ss_pred ccccHHHHHHHHHHcCC-cEEEEEcC-----------------CCCh---HHHHHhhh-hcceEEEEeecCCCCCCcccH
Q 025927 150 STIHLHRTLNQIKDLGA-KAGVVLNP-----------------ATSL---SAIECVLD-VVDLVLIMSVNPGFGGQSFIE 207 (246)
Q Consensus 150 ~~~~~~~~i~~Ik~~G~-k~GlAlnP-----------------~Tpv---e~l~~~l~-~vD~VLvMsV~PGfgGQ~F~~ 207 (246)
..++..+.+..++.+. ++.++++. .|+. +.++.+.+ -+|.|++..+.+.-.++.+.-
T Consensus 104 -~~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~G~d~i~v~~i~~~g~~~g~~~ 182 (243)
T cd04731 104 -VENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMDRDGTKKGYDL 182 (243)
T ss_pred -hhChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHHCCCCEEEEeccCCCCCCCCCCH
Confidence 2345445555555553 35555541 1232 33333333 389999988887544555655
Q ss_pred HHHHHHHHHHHHHHhcCCCCeEEEeCCCC-hhhhhhcc
Q 025927 208 SQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVP 244 (246)
Q Consensus 208 ~~l~KI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~l~ 244 (246)
+.++++++ . .+..+.+=|||+ .+.+..+.
T Consensus 183 ~~i~~i~~---~-----~~~pvia~GGi~~~~di~~~l 212 (243)
T cd04731 183 ELIRAVSS---A-----VNIPVIASGGAGKPEHFVEAF 212 (243)
T ss_pred HHHHHHHh---h-----CCCCEEEeCCCCCHHHHHHHH
Confidence 55555443 2 235678889995 56666554
No 54
>PRK07094 biotin synthase; Provisional
Probab=96.76 E-value=0.026 Score=51.88 Aligned_cols=152 Identities=17% Similarity=0.173 Sum_probs=94.5
Q ss_pred ChhhHHHHHHHHHHcCCCEEEeeeccCc-ccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEEEcc
Q 025927 68 NFAKLGEQVKAVELAGCDWIHVDVMDGR-FVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHC 146 (246)
Q Consensus 68 D~~~l~~~i~~l~~~g~d~lHiDIMDG~-FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It~H~ 146 (246)
+..++.++++.+.+.|++.+++ ..|. +.-+...=.++++.|++..++.+.+++... ....++.+.++|++.+.+-+
T Consensus 71 s~eei~~~~~~~~~~g~~~i~l--~gG~~~~~~~~~l~~l~~~i~~~~~l~i~~~~g~~-~~e~l~~Lk~aG~~~v~~gl 147 (323)
T PRK07094 71 SPEEILECAKKAYELGYRTIVL--QSGEDPYYTDEKIADIIKEIKKELDVAITLSLGER-SYEEYKAWKEAGADRYLLRH 147 (323)
T ss_pred CHHHHHHHHHHHHHCCCCEEEE--ecCCCCCCCHHHHHHHHHHHHccCCceEEEecCCC-CHHHHHHHHHcCCCEEEecc
Confidence 5667778888888899999886 4543 111111112355555654444444444333 34578899999999999989
Q ss_pred CCcc------------cccHHHHHHHHHHcCCcE--EEEEc-CCCChHHHHHhhh-----hcceEEEEeecCCCCCCcc-
Q 025927 147 EQSS------------TIHLHRTLNQIKDLGAKA--GVVLN-PATSLSAIECVLD-----VVDLVLIMSVNPGFGGQSF- 205 (246)
Q Consensus 147 E~~~------------~~~~~~~i~~Ik~~G~k~--GlAln-P~Tpve~l~~~l~-----~vD~VLvMsV~PGfgGQ~F- 205 (246)
|+.+ .++..+.++.++++|+.+ |+.+. |+-..+.+...+. .+|.+-++...|- .|-+|
T Consensus 148 Es~~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~~~l~~l~~l~~~~v~~~~~~P~-pgTpl~ 226 (323)
T PRK07094 148 ETADKELYAKLHPGMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDILFLKELDLDMIGIGPFIPH-PDTPLK 226 (323)
T ss_pred ccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHHHHHHHHHhCCCCeeeeeccccC-CCCCcc
Confidence 9641 123557788889999865 45555 4655566655443 2567777666652 22222
Q ss_pred ------cHHHHHHHHHHHHHHHhc
Q 025927 206 ------IESQVKKISDLRRMCLEK 223 (246)
Q Consensus 206 ------~~~~l~KI~~lr~l~~~~ 223 (246)
..++++.++.+|.+++..
T Consensus 227 ~~~~~~~~~~~~~~a~~R~~lp~~ 250 (323)
T PRK07094 227 DEKGGSLELTLKVLALLRLLLPDA 250 (323)
T ss_pred cCCCCCHHHHHHHHHHHHHhCcCC
Confidence 345578888888888754
No 55
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=96.75 E-value=0.016 Score=49.27 Aligned_cols=165 Identities=18% Similarity=0.141 Sum_probs=95.6
Q ss_pred EEeeeecccChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcC
Q 025927 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAG 138 (246)
Q Consensus 59 ~IsPSIl~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~ag 138 (246)
.|+|.-++ ..++.+.++++.+.|++++|+-.-|..--.- .+.++.+.+.+. ..++.+++.+ +.+...+.|
T Consensus 3 ~It~~~~~--~~~~~~~l~~~~~~gv~~v~lR~k~~~~~~~----~~~a~~l~~~~~-~~~~~liin~---~~~la~~~~ 72 (180)
T PF02581_consen 3 LITDPRLC--GDDFLEQLEAALAAGVDLVQLREKDLSDEEL----LELARRLAELCQ-KYGVPLIIND---RVDLALELG 72 (180)
T ss_dssp EEE-STTS--TCHHHHHHHHHHHTT-SEEEEE-SSS-HHHH----HHHHHHHHHHHH-HTTGCEEEES----HHHHHHCT
T ss_pred EEeCCchh--cchHHHHHHHHHHCCCcEEEEcCCCCCccHH----HHHHHHHHHHhh-cceEEEEecC---CHHHHHhcC
Confidence 46677676 5667888999999999999998865221100 122333333221 1255677776 455667789
Q ss_pred CCEEEEccCCcccccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhh-hhcceEEEEeecCCCCCCcccHHHHHHHHHHH
Q 025927 139 ADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVL-DVVDLVLIMSVNPGFGGQSFIESQVKKISDLR 217 (246)
Q Consensus 139 ad~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l-~~vD~VLvMsV~PGfgGQ~F~~~~l~KI~~lr 217 (246)
+|.|.+-.+. ..+.+ .+.....+..+|.... +.+++.... ..+|+|.+=.|-|--.=..--+--++.+++++
T Consensus 73 ~dGvHl~~~~---~~~~~-~r~~~~~~~~ig~S~h---~~~e~~~a~~~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~ 145 (180)
T PF02581_consen 73 ADGVHLGQSD---LPPAE-ARKLLGPDKIIGASCH---SLEEAREAEELGADYVFLGPVFPTSSKPGAPPLGLDGLREIA 145 (180)
T ss_dssp -SEEEEBTTS---SSHHH-HHHHHTTTSEEEEEES---SHHHHHHHHHCTTSEEEEETSS--SSSSS-TTCHHHHHHHHH
T ss_pred CCEEEecccc---cchHH-hhhhcccceEEEeecC---cHHHHHHhhhcCCCEEEECCccCCCCCccccccCHHHHHHHH
Confidence 9998877653 12222 2333345678888766 344454443 46899999877554332223455566666666
Q ss_pred HHHHhcCCCCeEEEeCCCChhhhhhccc
Q 025927 218 RMCLEKGVNPWIEVDGGVGPKNAYKVPN 245 (246)
Q Consensus 218 ~l~~~~~~~~~I~VDGGI~~e~i~~l~~ 245 (246)
+..+ ..+.+=|||+.+|+.++.+
T Consensus 146 ~~~~-----~pv~AlGGI~~~~i~~l~~ 168 (180)
T PF02581_consen 146 RASP-----IPVYALGGITPENIPELRE 168 (180)
T ss_dssp HHTS-----SCEEEESS--TTTHHHHHH
T ss_pred HhCC-----CCEEEEcCCCHHHHHHHHH
Confidence 6543 4688889999999998764
No 56
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=96.58 E-value=0.057 Score=48.79 Aligned_cols=128 Identities=16% Similarity=0.148 Sum_probs=84.6
Q ss_pred CCCCeeEEEeccCcccch---HHHHhcCCCEEEEccCCc----------ccccHHHHHHHHHHc-CCcEEEEEcCCCChH
Q 025927 114 TDLPLDVHLMIVEPEQRV---PDFIKAGADIVSVHCEQS----------STIHLHRTLNQIKDL-GAKAGVVLNPATSLS 179 (246)
Q Consensus 114 t~~plDvHLMV~~P~~~i---~~~~~agad~It~H~E~~----------~~~~~~~~i~~Ik~~-G~k~GlAlnP~Tpve 179 (246)
++.|+-+-++-.+|+.|. +.+.++|+|.|-++.-+- ....+.++++.+|+. ++-+++=++|..+.+
T Consensus 97 ~~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~ 176 (289)
T cd02810 97 PGQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYFDLE 176 (289)
T ss_pred CCCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCCCHH
Confidence 568889999888888764 455667999999986420 012355788888876 667788888887754
Q ss_pred HHHHhhh---h--cceEEEEeecC------------------CCCCCcccHHHHHHHHHHHHHHHhcCCCCeEEEeCCCC
Q 025927 180 AIECVLD---V--VDLVLIMSVNP------------------GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG 236 (246)
Q Consensus 180 ~l~~~l~---~--vD~VLvMsV~P------------------GfgGQ~F~~~~l~KI~~lr~l~~~~~~~~~I~VDGGI~ 236 (246)
++.+++. + +|.|.+-...+ |++|....+..++-++++++..+ .++.|..-|||+
T Consensus 177 ~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~---~~ipiia~GGI~ 253 (289)
T cd02810 177 DIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQ---LDIPIIGVGGID 253 (289)
T ss_pred HHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcC---CCCCEEEECCCC
Confidence 4444432 2 79988753211 23444455667777777777653 236788999997
Q ss_pred -hhhhhhcc
Q 025927 237 -PKNAYKVP 244 (246)
Q Consensus 237 -~e~i~~l~ 244 (246)
.+.+.++.
T Consensus 254 ~~~da~~~l 262 (289)
T cd02810 254 SGEDVLEML 262 (289)
T ss_pred CHHHHHHHH
Confidence 57766654
No 57
>PRK06256 biotin synthase; Validated
Probab=96.56 E-value=0.076 Score=49.17 Aligned_cols=161 Identities=20% Similarity=0.155 Sum_probs=97.7
Q ss_pred cChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCC---CCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEE
Q 025927 67 ANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNIT---IGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVS 143 (246)
Q Consensus 67 aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~t---fgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It 143 (246)
.++.++.++++.+.+.|+..+++- +|-+-|+.. .=.+.++.|++.+++.+.+++-.-++ ..++.+.++|++.+.
T Consensus 91 ~s~eeI~~~~~~~~~~g~~~~~l~--~~g~~p~~~~~~~~~e~i~~i~~~~~i~~~~~~g~l~~-e~l~~LkeaG~~~v~ 167 (336)
T PRK06256 91 LDIEELIEAAKEAIEEGAGTFCIV--ASGRGPSGKEVDQVVEAVKAIKEETDLEICACLGLLTE-EQAERLKEAGVDRYN 167 (336)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEE--ecCCCCCchHHHHHHHHHHHHHhcCCCcEEecCCcCCH-HHHHHHHHhCCCEEe
Confidence 466788888888888898777653 333434321 11244555555444444444433333 457889999999999
Q ss_pred EccCCc-----------ccccHHHHHHHHHHcCCcEE--EEEcCCCChHHHHHhhh-----hcceEEEEeecC--C--CC
Q 025927 144 VHCEQS-----------STIHLHRTLNQIKDLGAKAG--VVLNPATSLSAIECVLD-----VVDLVLIMSVNP--G--FG 201 (246)
Q Consensus 144 ~H~E~~-----------~~~~~~~~i~~Ik~~G~k~G--lAlnP~Tpve~l~~~l~-----~vD~VLvMsV~P--G--fg 201 (246)
+-+|+. +.++..+.++.+++.|++++ +.+..+...+++...+. .+|.|-+....| | +.
T Consensus 168 ~~lEts~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~I~GlgEt~ed~~~~~~~l~~l~~~~v~i~~l~P~pGT~l~ 247 (336)
T PRK06256 168 HNLETSRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGGIIGMGESLEDRVEHAFFLKELDADSIPINFLNPIPGTPLE 247 (336)
T ss_pred cCCccCHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCeEEeCCCCHHHHHHHHHHHHhCCCCEEeecccccCCCCCCC
Confidence 877752 01124477888889997764 55555555655555443 366676655554 5 33
Q ss_pred CCcc--cHHHHHHHHHHHHHHHhcCCCCeEEEeCC
Q 025927 202 GQSF--IESQVKKISDLRRMCLEKGVNPWIEVDGG 234 (246)
Q Consensus 202 GQ~F--~~~~l~KI~~lr~l~~~~~~~~~I~VDGG 234 (246)
+++. ..+.++.+.-+|-+++.. .|.+=||
T Consensus 248 ~~~~~~~~e~l~~ia~~Rl~~p~~----~I~~~~g 278 (336)
T PRK06256 248 NHPELTPLECLKTIAIFRLINPDK----EIRIAGG 278 (336)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCC----eeEecCc
Confidence 4332 356666677777776643 5666677
No 58
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=96.39 E-value=0.19 Score=45.06 Aligned_cols=161 Identities=18% Similarity=0.141 Sum_probs=95.8
Q ss_pred hHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEEEccCCcc
Q 025927 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS 150 (246)
Q Consensus 71 ~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It~H~E~~~ 150 (246)
+..+.++.+++.|++++|+==.|+-. -.-.-..+.++++++.++.|+.+===+.+++. ++.+..+|++.+.+=-+.
T Consensus 31 dp~~~a~~~~~~G~~~l~v~Dl~~~~-~~~~~n~~~i~~i~~~~~~pv~~~GGi~s~~d-~~~~~~~Ga~~vivgt~~-- 106 (254)
T TIGR00735 31 DPVELAQRYDEEGADELVFLDITASS-EGRTTMIDVVERTAETVFIPLTVGGGIKSIED-VDKLLRAGADKVSINTAA-- 106 (254)
T ss_pred CHHHHHHHHHHcCCCEEEEEcCCccc-ccChhhHHHHHHHHHhcCCCEEEECCCCCHHH-HHHHHHcCCCEEEEChhH--
Confidence 45566777788999999973334431 12334466788887776666555444555554 556677899999987764
Q ss_pred cccHHHHHHHHHHcC-CcEEEEEc--CC---------------------CChHHHHHhhh-hcceEEEEeecCCCCCCcc
Q 025927 151 TIHLHRTLNQIKDLG-AKAGVVLN--PA---------------------TSLSAIECVLD-VVDLVLIMSVNPGFGGQSF 205 (246)
Q Consensus 151 ~~~~~~~i~~Ik~~G-~k~GlAln--P~---------------------Tpve~l~~~l~-~vD~VLvMsV~PGfgGQ~F 205 (246)
..++..+-+..+..| -++-++|. .+ .+++..+.+.+ -+|.|++.+++....++.+
T Consensus 107 ~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l~~~G~~~iivt~i~~~g~~~g~ 186 (254)
T TIGR00735 107 VKNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKEVEKLGAGEILLTSMDKDGTKSGY 186 (254)
T ss_pred hhChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHHHHHcCCCEEEEeCcCcccCCCCC
Confidence 345554555555666 34555554 11 12233333333 2799999888875445556
Q ss_pred cHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCh-hhhhhc
Q 025927 206 IESQVKKISDLRRMCLEKGVNPWIEVDGGVGP-KNAYKV 243 (246)
Q Consensus 206 ~~~~l~KI~~lr~l~~~~~~~~~I~VDGGI~~-e~i~~l 243 (246)
.-+.++++++ . . +..+.+=|||+. +.+.++
T Consensus 187 ~~~~~~~i~~---~---~--~ipvia~GGi~s~~di~~~ 217 (254)
T TIGR00735 187 DLELTKAVSE---A---V--KIPVIASGGAGKPEHFYEA 217 (254)
T ss_pred CHHHHHHHHH---h---C--CCCEEEeCCCCCHHHHHHH
Confidence 5555555443 2 1 345777788864 444443
No 59
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=96.30 E-value=0.071 Score=48.74 Aligned_cols=164 Identities=18% Similarity=0.166 Sum_probs=101.2
Q ss_pred CcEEeeeecccChhhHHHHHHHHHHcC-CCEEEeeec-----c-C-cccCCCCCCHHHHhhcccCCCCCeeEEEec--cC
Q 025927 57 DIIVSPSILSANFAKLGEQVKAVELAG-CDWIHVDVM-----D-G-RFVPNITIGPLVVDALRPVTDLPLDVHLMI--VE 126 (246)
Q Consensus 57 ~~~IsPSIl~aD~~~l~~~i~~l~~~g-~d~lHiDIM-----D-G-~FVpN~tfgp~~I~~ir~~t~~plDvHLMV--~~ 126 (246)
+..+.+||...+...+.+-.++++++| +|.+=+-+. . | .+-.+..|--++++++|+.+++|+-+.|-. ++
T Consensus 91 ~~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~ 170 (301)
T PRK07259 91 DTPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTPNVTD 170 (301)
T ss_pred CCcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCCCchh
Confidence 567889999999999999999999998 999866551 1 1 111122334667788888778999988863 23
Q ss_pred cccchHHHHhcCCCEEEEc---------cCCc-----------c----cccHHHHHHHHHHcCCcEEEEEcCCCChHHHH
Q 025927 127 PEQRVPDFIKAGADIVSVH---------CEQS-----------S----TIHLHRTLNQIKDLGAKAGVVLNPATSLSAIE 182 (246)
Q Consensus 127 P~~~i~~~~~agad~It~H---------~E~~-----------~----~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~ 182 (246)
...+.+.+.++|+|.|+++ .+.. + .....+.+..+++.--..=++..-=+..+..+
T Consensus 171 ~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI~~~~da~ 250 (301)
T PRK07259 171 IVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGISSAEDAI 250 (301)
T ss_pred HHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECCCCCHHHHH
Confidence 3456677788999998863 2210 0 00124667777765212233333335667777
Q ss_pred Hhh-hhcceEEEEeecCCCCCCcccHHHHHHHHH-HHHHHHhcCCC
Q 025927 183 CVL-DVVDLVLIMSVNPGFGGQSFIESQVKKISD-LRRMCLEKGVN 226 (246)
Q Consensus 183 ~~l-~~vD~VLvMsV~PGfgGQ~F~~~~l~KI~~-lr~l~~~~~~~ 226 (246)
+++ .-+|.|.+-+-- . ..|...+|+++ +.++++++|++
T Consensus 251 ~~l~aGAd~V~igr~l--l----~~P~~~~~i~~~l~~~~~~~g~~ 290 (301)
T PRK07259 251 EFIMAGASAVQVGTAN--F----YDPYAFPKIIEGLEAYLDKYGIK 290 (301)
T ss_pred HHHHcCCCceeEcHHH--h----cCcHHHHHHHHHHHHHHHHcCCC
Confidence 765 348877763321 1 13556666544 45666666653
No 60
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=96.30 E-value=0.19 Score=45.64 Aligned_cols=163 Identities=20% Similarity=0.144 Sum_probs=98.2
Q ss_pred CCcEEeeeecccChhhHHHHHHHHHHcCCCEEEeeecc-------CcccCCCCCCHHHHhhcccCCCCCeeEEEecc--C
Q 025927 56 SDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMD-------GRFVPNITIGPLVVDALRPVTDLPLDVHLMIV--E 126 (246)
Q Consensus 56 ~~~~IsPSIl~aD~~~l~~~i~~l~~~g~d~lHiDIMD-------G~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~--~ 126 (246)
.+..+.+||...+...+.+..++++++|+|.+=+-+.- ..|..+..+-.++++++|+.+++|+-+-|=.. +
T Consensus 88 ~~~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~~~~~ 167 (296)
T cd04740 88 FGTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTPNVTD 167 (296)
T ss_pred CCCcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEeCCCchh
Confidence 35678899999999999999999999999988776541 11222222233568888888788888876221 2
Q ss_pred cccchHHHHhcCCCEEEE---------ccCCcc-----------c----ccHHHHHHHHHHcCCcEEEEEcCC-CChHHH
Q 025927 127 PEQRVPDFIKAGADIVSV---------HCEQSS-----------T----IHLHRTLNQIKDLGAKAGVVLNPA-TSLSAI 181 (246)
Q Consensus 127 P~~~i~~~~~agad~It~---------H~E~~~-----------~----~~~~~~i~~Ik~~G~k~GlAlnP~-Tpve~l 181 (246)
.....+.+.++|+|.|++ |.+... . ....+.+..+++.- ++=|.-+=+ +..+.+
T Consensus 168 ~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~-~ipii~~GGI~~~~da 246 (296)
T cd04740 168 IVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAV-EIPIIGVGGIASGEDA 246 (296)
T ss_pred HHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhc-CCCEEEECCCCCHHHH
Confidence 334566678899998887 343210 0 00235677777642 222333333 456777
Q ss_pred HHhhh-hcceEEEEeecCCCCCCcccHHHHHHHHH-HHHHHHhcCC
Q 025927 182 ECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISD-LRRMCLEKGV 225 (246)
Q Consensus 182 ~~~l~-~vD~VLvMsV~PGfgGQ~F~~~~l~KI~~-lr~l~~~~~~ 225 (246)
.+++. -+|.|.+=+-- . ..|....||++ +.++++++|+
T Consensus 247 ~~~l~~GAd~V~igra~--l----~~p~~~~~i~~~l~~~~~~~g~ 286 (296)
T cd04740 247 LEFLMAGASAVQVGTAN--F----VDPEAFKEIIEGLEAYLDEEGI 286 (296)
T ss_pred HHHHHcCCCEEEEchhh--h----cChHHHHHHHHHHHHHHHHcCC
Confidence 77664 48887763221 1 13445555443 4566666654
No 61
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=96.28 E-value=0.067 Score=46.36 Aligned_cols=139 Identities=22% Similarity=0.262 Sum_probs=96.7
Q ss_pred CCCCCcEEeeeecccChhhHHHHHHHHHHcCCCEEEeee-----------ccCcccCCCCCCHHHHhhcccCCCCCeeEE
Q 025927 53 FSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDV-----------MDGRFVPNITIGPLVVDALRPVTDLPLDVH 121 (246)
Q Consensus 53 ~~~~~~~IsPSIl~aD~~~l~~~i~~l~~~g~d~lHiDI-----------MDG~FVpN~tfgp~~I~~ir~~t~~plDvH 121 (246)
....+..+.++|...|...+.+..+.+.++|+|.+=+-+ .-|....+..|--++++++|+..+.|+.+-
T Consensus 50 ~~~~~~p~~~qi~g~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk 129 (231)
T cd02801 50 RNPEERPLIVQLGGSDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVK 129 (231)
T ss_pred cCccCCCEEEEEcCCCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 344567899999999999999999999999999875543 123334455666788888888766777665
Q ss_pred Eec--c---CcccchHHHHhcCCCEEEEccCCc----c-cccHHHHHHHHHHcCCcEEEEEcCC-CChHHHHHhhhh--c
Q 025927 122 LMI--V---EPEQRVPDFIKAGADIVSVHCEQS----S-TIHLHRTLNQIKDLGAKAGVVLNPA-TSLSAIECVLDV--V 188 (246)
Q Consensus 122 LMV--~---~P~~~i~~~~~agad~It~H~E~~----~-~~~~~~~i~~Ik~~G~k~GlAlnP~-Tpve~l~~~l~~--v 188 (246)
+=. . +...+++.+.++|++.|++|.-.. . ..+ .+.++.+++. .++-|..+-+ +..+.++.++.. +
T Consensus 130 ~r~~~~~~~~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~-~~~~~~i~~~-~~ipvi~~Ggi~~~~d~~~~l~~~ga 207 (231)
T cd02801 130 IRLGWDDEEETLELAKALEDAGASALTVHGRTREQRYSGPAD-WDYIAEIKEA-VSIPVIANGDIFSLEDALRCLEQTGV 207 (231)
T ss_pred EeeccCCchHHHHHHHHHHHhCCCEEEECCCCHHHcCCCCCC-HHHHHHHHhC-CCCeEEEeCCCCCHHHHHHHHHhcCC
Confidence 422 1 345677788889999999997521 0 112 3456677763 4555666655 467888888775 8
Q ss_pred ceEEE
Q 025927 189 DLVLI 193 (246)
Q Consensus 189 D~VLv 193 (246)
|.|.+
T Consensus 208 d~V~i 212 (231)
T cd02801 208 DGVMI 212 (231)
T ss_pred CEEEE
Confidence 88766
No 62
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.26 E-value=0.2 Score=44.82 Aligned_cols=164 Identities=11% Similarity=0.084 Sum_probs=104.3
Q ss_pred ccChhhHHHHHHHHHH-cCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEEE
Q 025927 66 SANFAKLGEQVKAVEL-AGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSV 144 (246)
Q Consensus 66 ~aD~~~l~~~i~~l~~-~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It~ 144 (246)
..|+.. ..+.+++ .|+|++|+==.||.. .+-.-..++|++|.+.+++|+.+===+.+.+ -++.+.++||+.+.+
T Consensus 30 ~~dp~~---~a~~~~~~~Ga~~l~ivDLd~a~-~~~~~n~~~I~~i~~~~~~pi~vGGGIrs~e-~v~~~l~~Ga~kvvi 104 (234)
T PRK13587 30 SRSAEE---SIAYYSQFECVNRIHIVDLIGAK-AQHAREFDYIKSLRRLTTKDIEVGGGIRTKS-QIMDYFAAGINYCIV 104 (234)
T ss_pred CCCHHH---HHHHHHhccCCCEEEEEECcccc-cCCcchHHHHHHHHhhcCCeEEEcCCcCCHH-HHHHHHHCCCCEEEE
Confidence 345554 4566666 699999973335554 2333346789999877666654432334433 477788899999999
Q ss_pred ccCCcccccHHHHHHHHHHcCCcEEEEEcC--C----------CC---hHHHHHhhhh-cceEEEEeecCCCCCCcccHH
Q 025927 145 HCEQSSTIHLHRTLNQIKDLGAKAGVVLNP--A----------TS---LSAIECVLDV-VDLVLIMSVNPGFGGQSFIES 208 (246)
Q Consensus 145 H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP--~----------Tp---ve~l~~~l~~-vD~VLvMsV~PGfgGQ~F~~~ 208 (246)
=-++ ..++.-+-+..++.|-++-++|.- + +. ++.++.+.+. +..++++.++..-.+|.++-+
T Consensus 105 gt~a--~~~~~~l~~~~~~fg~~ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~~~~ 182 (234)
T PRK13587 105 GTKG--IQDTDWLKEMAHTFPGRIYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSDIPLGGIIYTDIAKDGKMSGPNFE 182 (234)
T ss_pred CchH--hcCHHHHHHHHHHcCCCEEEEEEeeCCEEEecCCcccCCCCHHHHHHHHHHcCCCEEEEecccCcCCCCccCHH
Confidence 8875 345554444555666666566553 1 22 4444454443 688999999987777888888
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEeCCCCh-hhhhhcc
Q 025927 209 QVKKISDLRRMCLEKGVNPWIEVDGGVGP-KNAYKVP 244 (246)
Q Consensus 209 ~l~KI~~lr~l~~~~~~~~~I~VDGGI~~-e~i~~l~ 244 (246)
.++++.+. .+..+.+=||++. +.+.++.
T Consensus 183 li~~l~~~--------~~ipvi~~GGi~s~edi~~l~ 211 (234)
T PRK13587 183 LTGQLVKA--------TTIPVIASGGIRHQQDIQRLA 211 (234)
T ss_pred HHHHHHHh--------CCCCEEEeCCCCCHHHHHHHH
Confidence 77766532 1346888899975 4555443
No 63
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=96.25 E-value=0.097 Score=47.77 Aligned_cols=151 Identities=23% Similarity=0.318 Sum_probs=86.7
Q ss_pred HHHHHHHHcCCCEEEe--eeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcc--c-------------chHHHHh
Q 025927 74 EQVKAVELAGCDWIHV--DVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPE--Q-------------RVPDFIK 136 (246)
Q Consensus 74 ~~i~~l~~~g~d~lHi--DIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~--~-------------~i~~~~~ 136 (246)
+.+...+++|+|.|.+ +...|=..| ++.+++.+++..++| +|.|+ +|. . -|+.+.+
T Consensus 12 ~~a~~A~~~GAdRiELc~~L~~GGlTP----S~g~i~~~~~~~~ip--v~vMI-RPR~gdF~Ys~~E~~~M~~di~~~~~ 84 (248)
T PRK11572 12 ECALTAQQAGADRIELCAAPKEGGLTP----SLGVLKSVRERVTIP--VHPII-RPRGGDFCYSDGEFAAMLEDIATVRE 84 (248)
T ss_pred HHHHHHHHcCCCEEEEccCcCCCCcCC----CHHHHHHHHHhcCCC--eEEEE-ecCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 3455667889999987 444554555 466788888765555 78888 554 1 3667788
Q ss_pred cCCCEEEEcc---CCcccccHHHHHHHHHHcCCcEEEEE----cCC-CChHHHHHhhhh-cceEEEEeecCCCCCCcccH
Q 025927 137 AGADIVSVHC---EQSSTIHLHRTLNQIKDLGAKAGVVL----NPA-TSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIE 207 (246)
Q Consensus 137 agad~It~H~---E~~~~~~~~~~i~~Ik~~G~k~GlAl----nP~-Tpve~l~~~l~~-vD~VLvMsV~PGfgGQ~F~~ 207 (246)
+|+|-+-|=+ +. ..|..++-+.++..+ ...+.+ .-- .+.+.++.+++. +|.|| |- ||++=..
T Consensus 85 ~GadGvV~G~L~~dg--~vD~~~~~~Li~~a~-~~~vTFHRAfD~~~d~~~al~~l~~lG~~rIL--TS----Gg~~~a~ 155 (248)
T PRK11572 85 LGFPGLVTGVLDVDG--HVDMPRMRKIMAAAG-PLAVTFHRAFDMCANPLNALKQLADLGVARIL--TS----GQQQDAE 155 (248)
T ss_pred cCCCEEEEeeECCCC--CcCHHHHHHHHHHhc-CCceEEechhhccCCHHHHHHHHHHcCCCEEE--CC----CCCCCHH
Confidence 8999887743 21 223333333333222 122333 221 233455555443 55544 22 4444344
Q ss_pred HHHHHHHHHHHHHHhcCCCCeEEEeCCCChhhhhhcc
Q 025927 208 SQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVP 244 (246)
Q Consensus 208 ~~l~KI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~l~ 244 (246)
+-++.|+++.++ .+ +..|.+=||||.+|++++.
T Consensus 156 ~g~~~L~~lv~~---a~-~~~Im~GgGV~~~Nv~~l~ 188 (248)
T PRK11572 156 QGLSLIMELIAA---SD-GPIIMAGAGVRLSNLHKFL 188 (248)
T ss_pred HHHHHHHHHHHh---cC-CCEEEeCCCCCHHHHHHHH
Confidence 555555554443 33 2349999999999998874
No 64
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=96.25 E-value=0.21 Score=45.73 Aligned_cols=178 Identities=20% Similarity=0.220 Sum_probs=122.1
Q ss_pred CCcEEeeeecccCh--hhHHHHHHHHHHcCCCEEEeee------ccCcccCC-------CCC----CHHHHhhcc-cCCC
Q 025927 56 SDIIVSPSILSANF--AKLGEQVKAVELAGCDWIHVDV------MDGRFVPN-------ITI----GPLVVDALR-PVTD 115 (246)
Q Consensus 56 ~~~~IsPSIl~aD~--~~l~~~i~~l~~~g~d~lHiDI------MDG~FVpN-------~tf----gp~~I~~ir-~~t~ 115 (246)
++..+.|=+.+.++ ....+.++.|.++|+|.+-+-| .||...-. -++ ..++++.+| +.++
T Consensus 8 ~~~~li~yitaG~P~~~~~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~ 87 (259)
T PF00290_consen 8 GRKALIPYITAGYPDLETTLEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPD 87 (259)
T ss_dssp TBTEEEEEEETTSSSHHHHHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTS
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCC
Confidence 35667777888876 4666888999999999999975 67755432 122 235678888 6667
Q ss_pred CCeeEEEecc-C------cccchHHHHhcCCCEEEEccCCcccccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhhhc
Q 025927 116 LPLDVHLMIV-E------PEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVV 188 (246)
Q Consensus 116 ~plDvHLMV~-~------P~~~i~~~~~agad~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~~v 188 (246)
.|+- ||.. | .++|++.+.++|+|-+.++== ..++...+.+.+++.|+..=.-+.|.||-+.++.+....
T Consensus 88 ~piv--lm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDL--P~ee~~~~~~~~~~~gl~~I~lv~p~t~~~Ri~~i~~~a 163 (259)
T PF00290_consen 88 IPIV--LMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDL--PPEESEELREAAKKHGLDLIPLVAPTTPEERIKKIAKQA 163 (259)
T ss_dssp SEEE--EEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTS--BGGGHHHHHHHHHHTT-EEEEEEETTS-HHHHHHHHHH-
T ss_pred CCEE--EEeeccHHhccchHHHHHHHHHcCCCEEEEcCC--ChHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhC
Confidence 7754 5655 4 456888888999999998732 123456777888999999999999999999999998764
Q ss_pred -ceEEEEeecCCCCCC--cccHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCh-hhhhhc
Q 025927 189 -DLVLIMSVNPGFGGQ--SFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP-KNAYKV 243 (246)
Q Consensus 189 -D~VLvMsV~PGfgGQ--~F~~~~l~KI~~lr~l~~~~~~~~~I~VDGGI~~-e~i~~l 243 (246)
.+|-++++ .|-.|. .+.+...+.|+++|+.. +.-+.|-=||+. +.++++
T Consensus 164 ~gFiY~vs~-~GvTG~~~~~~~~l~~~i~~ik~~~-----~~Pv~vGFGI~~~e~~~~~ 216 (259)
T PF00290_consen 164 SGFIYLVSR-MGVTGSRTELPDELKEFIKRIKKHT-----DLPVAVGFGISTPEQAKKL 216 (259)
T ss_dssp SSEEEEESS-SSSSSTTSSCHHHHHHHHHHHHHTT-----SS-EEEESSS-SHHHHHHH
T ss_pred CcEEEeecc-CCCCCCcccchHHHHHHHHHHHhhc-----CcceEEecCCCCHHHHHHH
Confidence 45555666 565444 36677888888888775 235777667765 455554
No 65
>PRK07695 transcriptional regulator TenI; Provisional
Probab=96.22 E-value=0.11 Score=44.81 Aligned_cols=162 Identities=17% Similarity=0.128 Sum_probs=92.1
Q ss_pred CcEEeeeecccChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHh
Q 025927 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIK 136 (246)
Q Consensus 57 ~~~IsPSIl~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~ 136 (246)
-..|+++-++. ..+.+.++ +-++|++++|+---+...-. =...++++++.+ .+ ...|++.++ .+...+
T Consensus 4 l~~it~~~~~~--~~~~~~~~-~~~~g~~~iqlR~k~~~~~~----~~~~~~~l~~~~-~~-~~~liin~~---~~la~~ 71 (201)
T PRK07695 4 LHVISNGHQSF--EELVAVAM-QIHSEVDYIHIREREKSAKE----LYEGVESLLKKG-VP-ASKLIINDR---VDIALL 71 (201)
T ss_pred EEEEECCcccc--chHHHHHH-HHhCCCCEEEEcCCCCCHHH----HHHHHHHHHHhC-CC-CCeEEEECH---HHHHHH
Confidence 35688886654 34555555 55779999999854422110 012344454432 22 346888875 445566
Q ss_pred cCCCEEEEccCCcccccHHHHHHHHHH--cCCcEEEEEcCCCChHHHHHhhh-hcceEEEEeecCCCCCCcccHHHHHHH
Q 025927 137 AGADIVSVHCEQSSTIHLHRTLNQIKD--LGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKI 213 (246)
Q Consensus 137 agad~It~H~E~~~~~~~~~~i~~Ik~--~G~k~GlAlnP~Tpve~l~~~l~-~vD~VLvMsV~PGfgGQ~F~~~~l~KI 213 (246)
.|++.+.+-.+. ..+ ..+|+ .+..+|+... +++.+....+ .+|+|.+-.+-|....+.+.+.-++.+
T Consensus 72 ~~~~gvHl~~~~---~~~----~~~r~~~~~~~ig~s~~---s~e~a~~a~~~Gadyi~~g~v~~t~~k~~~~~~g~~~l 141 (201)
T PRK07695 72 LNIHRVQLGYRS---FSV----RSVREKFPYLHVGYSVH---SLEEAIQAEKNGADYVVYGHVFPTDCKKGVPARGLEEL 141 (201)
T ss_pred cCCCEEEeCccc---CCH----HHHHHhCCCCEEEEeCC---CHHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCHHHH
Confidence 788877765432 112 22232 2677888643 4555555433 589987654544332222323234445
Q ss_pred HHHHHHHHhcCCCCeEEEeCCCChhhhhhccc
Q 025927 214 SDLRRMCLEKGVNPWIEVDGGVGPKNAYKVPN 245 (246)
Q Consensus 214 ~~lr~l~~~~~~~~~I~VDGGI~~e~i~~l~~ 245 (246)
+++++.. +..+.+=|||+.+|+.++.+
T Consensus 142 ~~~~~~~-----~ipvia~GGI~~~~~~~~~~ 168 (201)
T PRK07695 142 SDIARAL-----SIPVIAIGGITPENTRDVLA 168 (201)
T ss_pred HHHHHhC-----CCCEEEEcCCCHHHHHHHHH
Confidence 5554432 35677889999999988753
No 66
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=96.22 E-value=0.11 Score=52.61 Aligned_cols=156 Identities=16% Similarity=0.098 Sum_probs=99.5
Q ss_pred HHHHHHHHHcCCCEEEeeeccCcccCCC--CCCHHH-HhhcccC-C-CCCeeEEEeccCcccch-HHHHhcCCCEEEEcc
Q 025927 73 GEQVKAVELAGCDWIHVDVMDGRFVPNI--TIGPLV-VDALRPV-T-DLPLDVHLMIVEPEQRV-PDFIKAGADIVSVHC 146 (246)
Q Consensus 73 ~~~i~~l~~~g~d~lHiDIMDG~FVpN~--tfgp~~-I~~ir~~-t-~~plDvHLMV~~P~~~i-~~~~~agad~It~H~ 146 (246)
.++++.+.+.|+|++=+ .|.|+- ...++. .++|.+. . ...--|=+.+..+..-+ +...+.+.|.|-+|-
T Consensus 13 ~eda~~a~~~gaD~iGf-----If~~~SpR~V~~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~~~~ld~vQLHG 87 (610)
T PRK13803 13 SALISKAVDMLPDFIGF-----IFYEKSPRFVGNKFLAPNLEKAIRKAGGRPVGVFVNESAKAMLKFSKKNGIDFVQLHG 87 (610)
T ss_pred HHHHHHHHHcCCCEEEE-----EecCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECC
Confidence 36677888899999988 355553 356666 5555432 1 11123555565544444 444568999999997
Q ss_pred CCcccccHHHHHHHHHHcCCcEEEEEcCC--CChHHHHHhhhhcceEEEEeecCCC--CCCcccHHHHHHHHHHHHHHHh
Q 025927 147 EQSSTIHLHRTLNQIKDLGAKAGVVLNPA--TSLSAIECVLDVVDLVLIMSVNPGF--GGQSFIESQVKKISDLRRMCLE 222 (246)
Q Consensus 147 E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~--Tpve~l~~~l~~vD~VLvMsV~PGf--gGQ~F~~~~l~KI~~lr~l~~~ 222 (246)
+. .......++.+++.++++-=++... ..++.+.+|.+.+|++|+=+-.|++ .|+.|+-+.+.++. .
T Consensus 88 ~e--~~~~~~~~~~l~~~~~~iika~~v~~~~~~~~~~~~~~~~d~~LlDs~~~~~GGtG~~fdw~~~~~~~-------~ 158 (610)
T PRK13803 88 AE--SKAEPAYCQRIYKKSIKKIGSFLIDDAFGFEVLDEYRDHVKYFLFDNKTKIYGGSGKSFDWEKFYNYN-------F 158 (610)
T ss_pred CC--CcccHHHHHHhhhcCCcEEEEEEeCChhhHHHHHhhhccCCEEEEcCCCCCCCCCCCccChHHhhhcc-------c
Confidence 63 1111356777777777765555543 3466677777779999998876644 57889876653221 1
Q ss_pred cCCCCeEEEeCCCChhhhhhccc
Q 025927 223 KGVNPWIEVDGGVGPKNAYKVPN 245 (246)
Q Consensus 223 ~~~~~~I~VDGGI~~e~i~~l~~ 245 (246)
...+.+=||+|.+|+.++++
T Consensus 159 ---~~p~iLAGGL~peNV~~ai~ 178 (610)
T PRK13803 159 ---KFPFFLSGGLSPTNFDRIIN 178 (610)
T ss_pred ---CCcEEEEeCCCHHHHHHHHh
Confidence 12356779999999988754
No 67
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=96.21 E-value=0.05 Score=51.03 Aligned_cols=141 Identities=23% Similarity=0.231 Sum_probs=96.8
Q ss_pred CCcEEeeeecccChhhHHHHHHHHHHcCCCEEEeeeccCcccCC-------------CCCCHHHHhhcccCCCCCeeEEE
Q 025927 56 SDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPN-------------ITIGPLVVDALRPVTDLPLDVHL 122 (246)
Q Consensus 56 ~~~~IsPSIl~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN-------------~tfgp~~I~~ir~~t~~plDvHL 122 (246)
.+.-+..+|...|+..+.+..+.++++|+|.|=+-. |.=++| .-|--++++++|+.+++|+++-+
T Consensus 63 ~e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IdlN~--gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKi 140 (333)
T PRK11815 63 EEHPVALQLGGSDPADLAEAAKLAEDWGYDEINLNV--GCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKH 140 (333)
T ss_pred CCCcEEEEEeCCCHHHHHHHHHHHHhcCCCEEEEcC--CCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEE
Confidence 355688999999999999999999999988664432 433333 23334778888887789999976
Q ss_pred ec--cCc------ccchHHHHhcCCCEEEEccCCc-----c-c-------ccHHHHHHHHHHcCCcEEEEEcCC-CChHH
Q 025927 123 MI--VEP------EQRVPDFIKAGADIVSVHCEQS-----S-T-------IHLHRTLNQIKDLGAKAGVVLNPA-TSLSA 180 (246)
Q Consensus 123 MV--~~P------~~~i~~~~~agad~It~H~E~~-----~-~-------~~~~~~i~~Ik~~G~k~GlAlnP~-Tpve~ 180 (246)
-+ .+. ..+++.+.++|++.+++|.-.. . . .+ ...+..+++.-..+=|..|-+ ++.++
T Consensus 141 R~g~~~~~t~~~~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~-~~~i~~v~~~~~~iPVI~nGgI~s~ed 219 (333)
T PRK11815 141 RIGIDDQDSYEFLCDFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLD-YDRVYRLKRDFPHLTIEINGGIKTLEE 219 (333)
T ss_pred EeeeCCCcCHHHHHHHHHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcC-HHHHHHHHHhCCCCeEEEECCcCCHHH
Confidence 33 222 3556777889999999995420 0 0 11 346677776532333555555 68899
Q ss_pred HHHhhhhcceEEE---EeecCC
Q 025927 181 IECVLDVVDLVLI---MSVNPG 199 (246)
Q Consensus 181 l~~~l~~vD~VLv---MsV~PG 199 (246)
++.++..+|.|.+ +--+|.
T Consensus 220 a~~~l~~aDgVmIGRa~l~nP~ 241 (333)
T PRK11815 220 AKEHLQHVDGVMIGRAAYHNPY 241 (333)
T ss_pred HHHHHhcCCEEEEcHHHHhCCH
Confidence 9999988998887 334553
No 68
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=96.21 E-value=0.13 Score=46.87 Aligned_cols=126 Identities=16% Similarity=0.220 Sum_probs=84.4
Q ss_pred CCCCeeEEEeccCcccchHH---HHhcCCCEEEEccCCc-----------ccccHHHHHHHHHHc-CCcEEEEEcCCCC-
Q 025927 114 TDLPLDVHLMIVEPEQRVPD---FIKAGADIVSVHCEQS-----------STIHLHRTLNQIKDL-GAKAGVVLNPATS- 177 (246)
Q Consensus 114 t~~plDvHLMV~~P~~~i~~---~~~agad~It~H~E~~-----------~~~~~~~~i~~Ik~~-G~k~GlAlnP~Tp- 177 (246)
++.|+-+-|+-.+++.|.+. +.++|+|.|-+|+=.- ....+.++++.+|+. ++.+++=++|+.+
T Consensus 88 ~~~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~~~~~ 167 (296)
T cd04740 88 FGTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTPNVTD 167 (296)
T ss_pred CCCcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEeCCCchh
Confidence 56789999999998877654 4557999999985310 112355788999988 7888888888743
Q ss_pred hHHHHHhhhh--cceEEEEee-----------cC-------CCCCCcccHHHHHHHHHHHHHHHhcCCCCeEEEeCCC-C
Q 025927 178 LSAIECVLDV--VDLVLIMSV-----------NP-------GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGV-G 236 (246)
Q Consensus 178 ve~l~~~l~~--vD~VLvMsV-----------~P-------GfgGQ~F~~~~l~KI~~lr~l~~~~~~~~~I~VDGGI-~ 236 (246)
...+...+.. +|.|.+-.. .| |+.|....|..++-++++++.. ++.|..-||| +
T Consensus 168 ~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~-----~ipii~~GGI~~ 242 (296)
T cd04740 168 IVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAV-----EIPIIGVGGIAS 242 (296)
T ss_pred HHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhc-----CCCEEEECCCCC
Confidence 3333333332 787755311 12 4567777777787777777653 3568889999 5
Q ss_pred hhhhhhcc
Q 025927 237 PKNAYKVP 244 (246)
Q Consensus 237 ~e~i~~l~ 244 (246)
.+.+.++.
T Consensus 243 ~~da~~~l 250 (296)
T cd04740 243 GEDALEFL 250 (296)
T ss_pred HHHHHHHH
Confidence 67776654
No 69
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=96.04 E-value=0.16 Score=47.07 Aligned_cols=136 Identities=19% Similarity=0.228 Sum_probs=90.9
Q ss_pred CcEEeeeecccChhhHHHHHHHHHHcCCCEEEeeec-------cCcc----cCCCCCCHHHHhhcccCCCCCeeEEEec-
Q 025927 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVM-------DGRF----VPNITIGPLVVDALRPVTDLPLDVHLMI- 124 (246)
Q Consensus 57 ~~~IsPSIl~aD~~~l~~~i~~l~~~g~d~lHiDIM-------DG~F----VpN~tfgp~~I~~ir~~t~~plDvHLMV- 124 (246)
+.-+.++|...|...+.+..+.++++|+|.|=+-.- |..+ ..+..+--++++++|+.+++|+.|-+=.
T Consensus 62 ~~p~i~ql~g~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g 141 (319)
T TIGR00737 62 ETPISVQLFGSDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIG 141 (319)
T ss_pred cceEEEEEeCCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcc
Confidence 456889999999999999999999999997644321 1110 1122233466778888788999988732
Q ss_pred --c---CcccchHHHHhcCCCEEEEccCCcc----cccHHHHHHHHHHcCCcEEEEEcCC-CChHHHHHhhhh--cceEE
Q 025927 125 --V---EPEQRVPDFIKAGADIVSVHCEQSS----TIHLHRTLNQIKDLGAKAGVVLNPA-TSLSAIECVLDV--VDLVL 192 (246)
Q Consensus 125 --~---~P~~~i~~~~~agad~It~H~E~~~----~~~~~~~i~~Ik~~G~k~GlAlnP~-Tpve~l~~~l~~--vD~VL 192 (246)
. +...+++.+.++|+|.|++|..... .....+.+..|++. .++=|..|-+ ++.+.++.++.. +|.|.
T Consensus 142 ~~~~~~~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~-~~ipvi~nGgI~~~~da~~~l~~~gad~Vm 220 (319)
T TIGR00737 142 WDDAHINAVEAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQA-VRIPVIGNGDIFSPEDAKAMLETTGCDGVM 220 (319)
T ss_pred cCCCcchHHHHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHc-CCCcEEEeCCCCCHHHHHHHHHhhCCCEEE
Confidence 1 2345667778899999999975311 11124667777764 2333444434 777888888853 89887
Q ss_pred E
Q 025927 193 I 193 (246)
Q Consensus 193 v 193 (246)
+
T Consensus 221 i 221 (319)
T TIGR00737 221 I 221 (319)
T ss_pred E
Confidence 7
No 70
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=95.96 E-value=0.29 Score=43.68 Aligned_cols=157 Identities=14% Similarity=0.156 Sum_probs=93.7
Q ss_pred HHHHHHHHHHcCCCEEEe-eeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEEEccCCcc
Q 025927 72 LGEQVKAVELAGCDWIHV-DVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS 150 (246)
Q Consensus 72 l~~~i~~l~~~g~d~lHi-DIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It~H~E~~~ 150 (246)
..+.++.+++.|++++|+ |+ |+.. .-.-..++|++|.+.++.|+.+===+.+.+ .++.+..+||+.+.+=.+.
T Consensus 34 p~~~a~~~~~~g~~~l~ivDL-d~~~--g~~~n~~~i~~i~~~~~~pv~vgGGirs~e-dv~~~l~~Ga~kvviGs~~-- 107 (241)
T PRK14024 34 PLDAALAWQRDGAEWIHLVDL-DAAF--GRGSNRELLAEVVGKLDVKVELSGGIRDDE-SLEAALATGCARVNIGTAA-- 107 (241)
T ss_pred HHHHHHHHHHCCCCEEEEEec-cccC--CCCccHHHHHHHHHHcCCCEEEcCCCCCHH-HHHHHHHCCCCEEEECchH--
Confidence 334566778899999996 44 4542 223335788888776666654433344443 4778888999999987775
Q ss_pred cccHHHHHHHHHHcCCcEEEEEcC--C------------CChHHHHHhhhh-cceEEEEeecCCCCCCcccHHHHHHHHH
Q 025927 151 TIHLHRTLNQIKDLGAKAGVVLNP--A------------TSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISD 215 (246)
Q Consensus 151 ~~~~~~~i~~Ik~~G~k~GlAlnP--~------------Tpve~l~~~l~~-vD~VLvMsV~PGfgGQ~F~~~~l~KI~~ 215 (246)
..++..+-+.+++.+-++.+.+.- + ++++.++.+-+. ++.++++.+..--..+.+.-+.++++
T Consensus 108 l~~p~l~~~i~~~~~~~i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~G~~~iiv~~~~~~g~~~G~d~~~i~~i-- 185 (241)
T PRK14024 108 LENPEWCARVIAEHGDRVAVGLDVRGHTLAARGWTRDGGDLWEVLERLDSAGCSRYVVTDVTKDGTLTGPNLELLREV-- 185 (241)
T ss_pred hCCHHHHHHHHHHhhhhEEEEEEEeccEeccCCeeecCccHHHHHHHHHhcCCCEEEEEeecCCCCccCCCHHHHHHH--
Confidence 345555555555655555443322 1 123444444332 79999999988444444554444444
Q ss_pred HHHHHHhcCCCCeEEEeCCCCh-hhhhh
Q 025927 216 LRRMCLEKGVNPWIEVDGGVGP-KNAYK 242 (246)
Q Consensus 216 lr~l~~~~~~~~~I~VDGGI~~-e~i~~ 242 (246)
++.. +..+.+=|||+. +.+.+
T Consensus 186 -~~~~-----~ipviasGGi~s~~D~~~ 207 (241)
T PRK14024 186 -CART-----DAPVVASGGVSSLDDLRA 207 (241)
T ss_pred -HhhC-----CCCEEEeCCCCCHHHHHH
Confidence 3321 345777888864 44443
No 71
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=95.92 E-value=0.1 Score=51.41 Aligned_cols=141 Identities=11% Similarity=0.085 Sum_probs=85.5
Q ss_pred ecccChhhHHHHHHHHH-HcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEec----cC---cccchHHHH
Q 025927 64 ILSANFAKLGEQVKAVE-LAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMI----VE---PEQRVPDFI 135 (246)
Q Consensus 64 Il~aD~~~l~~~i~~l~-~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV----~~---P~~~i~~~~ 135 (246)
.-.-++.++-+||+.+. +.|+..++ +.|.+|..|-..-.+++++|.+. + ++++++.+ .+ -+..++.+.
T Consensus 219 ~R~rs~e~Vv~Ei~~l~~~~gv~~~~--~~Dd~f~~~~~~~~~l~~~l~~~-~-~l~i~w~~~~r~~~i~~d~ell~~l~ 294 (497)
T TIGR02026 219 YRHRDPKKFVDEIEWLVRTHGVGFFI--LADEEPTINRKKFQEFCEEIIAR-N-PISVTWGINTRVTDIVRDADILHLYR 294 (497)
T ss_pred eecCCHHHHHHHHHHHHHHcCCCEEE--EEecccccCHHHHHHHHHHHHhc-C-CCCeEEEEecccccccCCHHHHHHHH
Confidence 33456778888998885 57888665 47877654433333555555432 1 23333322 11 235788899
Q ss_pred hcCCCEEEEccCCccc------------ccHHHHHHHHHHcCCcEE--EEEc-CCCChHHHHHhhh-----hcceEEEEe
Q 025927 136 KAGADIVSVHCEQSST------------IHLHRTLNQIKDLGAKAG--VVLN-PATSLSAIECVLD-----VVDLVLIMS 195 (246)
Q Consensus 136 ~agad~It~H~E~~~~------------~~~~~~i~~Ik~~G~k~G--lAln-P~Tpve~l~~~l~-----~vD~VLvMs 195 (246)
++|+..|.+=+|+.+. ++..+.++.+|++|+.+. +.+. |+...+.++.-++ ..|.+.+..
T Consensus 295 ~aG~~~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~~~~~l~~~~~~~~~ 374 (497)
T TIGR02026 295 RAGLVHISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYRQLLDWDPDQANWLM 374 (497)
T ss_pred HhCCcEEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHHHHHHcCCCceEEEE
Confidence 9999999999997521 235678889999998664 4444 6666666655443 267666654
Q ss_pred ecCCCCCCcccHHH
Q 025927 196 VNPGFGGQSFIESQ 209 (246)
Q Consensus 196 V~PGfgGQ~F~~~~ 209 (246)
.-| +.|-++-...
T Consensus 375 ~tP-~PGT~l~~~~ 387 (497)
T TIGR02026 375 YTP-WPFTSLFGEL 387 (497)
T ss_pred ecC-CCCcHHHHHH
Confidence 444 3344443333
No 72
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=95.88 E-value=0.034 Score=54.03 Aligned_cols=117 Identities=15% Similarity=0.131 Sum_probs=74.7
Q ss_pred cChhhHHHHHHHHHHc--CCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEEE
Q 025927 67 ANFAKLGEQVKAVELA--GCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSV 144 (246)
Q Consensus 67 aD~~~l~~~i~~l~~~--g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It~ 144 (246)
-...++.+|++.+.+. |++.+.+ .|..|..|-..-.++++.|++. ++.+.+..-+.--...++.+.++|+..|.+
T Consensus 227 rs~e~V~~Ei~~~~~~~~~~~~i~f--~Dd~f~~~~~~~~~l~~~l~~~-~i~~~~~~~~~~~~e~l~~l~~aG~~~v~i 303 (472)
T TIGR03471 227 RSAESVIEEVKYALENFPEVREFFF--DDDTFTDDKPRAEEIARKLGPL-GVTWSCNARANVDYETLKVMKENGLRLLLV 303 (472)
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEE--eCCCCCCCHHHHHHHHHHHhhc-CceEEEEecCCCCHHHHHHHHHcCCCEEEE
Confidence 3556888888888765 6777776 5877765432223445555543 344433322222245788999999999999
Q ss_pred ccCCcc------------cccHHHHHHHHHHcCCcEEEE--Ec-CCCChHHHHHhhh
Q 025927 145 HCEQSS------------TIHLHRTLNQIKDLGAKAGVV--LN-PATSLSAIECVLD 186 (246)
Q Consensus 145 H~E~~~------------~~~~~~~i~~Ik~~G~k~GlA--ln-P~Tpve~l~~~l~ 186 (246)
=+|+.+ .++..+.++.++++|+.+..- +. |+...+.++..++
T Consensus 304 GiES~s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~~ti~ 360 (472)
T TIGR03471 304 GYESGDQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTID 360 (472)
T ss_pred cCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHHHHHH
Confidence 999752 123557888899999887644 34 6666666655443
No 73
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=95.88 E-value=0.49 Score=42.66 Aligned_cols=163 Identities=15% Similarity=0.091 Sum_probs=102.3
Q ss_pred cccChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEEE
Q 025927 65 LSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSV 144 (246)
Q Consensus 65 l~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It~ 144 (246)
+..|+.++ .+.+++.|+|++|+==.||.+- +-.-..++|++|.+.+ .|+.+===+.+ ..-++.+.++|++.+.+
T Consensus 28 ~~~dP~~~---A~~~~~~ga~~lhivDLd~a~~-g~~~n~~~i~~i~~~~-~~v~vGGGIrs-~e~~~~~l~~Ga~rvvi 101 (241)
T PRK14114 28 YEKDPAEL---VEKLIEEGFTLIHVVDLSKAIE-NSVENLPVLEKLSEFA-EHIQIGGGIRS-LDYAEKLRKLGYRRQIV 101 (241)
T ss_pred ECCCHHHH---HHHHHHCCCCEEEEEECCCccc-CCcchHHHHHHHHhhc-CcEEEecCCCC-HHHHHHHHHCCCCEEEE
Confidence 44566655 5556678999999755576552 3334567888887755 44322222233 23466788899999999
Q ss_pred ccCCcccccHHHHHHHHHHcCCcEEEEEcC------------CCC---hHHHHHhhhh-cceEEEEeecCCCCCCcccHH
Q 025927 145 HCEQSSTIHLHRTLNQIKDLGAKAGVVLNP------------ATS---LSAIECVLDV-VDLVLIMSVNPGFGGQSFIES 208 (246)
Q Consensus 145 H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP------------~Tp---ve~l~~~l~~-vD~VLvMsV~PGfgGQ~F~~~ 208 (246)
=-++. .++. +++.+.+.|-++-++|.- .|. ++.++.+-+. +..|++++++---..|-++-+
T Consensus 102 gT~a~--~~p~-~l~~~~~~~~~ivvslD~k~g~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~tdI~rdGt~~G~d~e 178 (241)
T PRK14114 102 SSKVL--EDPS-FLKFLKEIDVEPVFSLDTRGGKVAFKGWLAEEEIDPVSLLKRLKEYGLEEIVHTEIEKDGTLQEHDFS 178 (241)
T ss_pred Cchhh--CCHH-HHHHHHHhCCCEEEEEEccCCEEeeCCCeecCCCCHHHHHHHHHhcCCCEEEEEeechhhcCCCcCHH
Confidence 87753 4443 455555666666555542 122 3444444332 678999999987777888888
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEeCCCCh-hhhhhcc
Q 025927 209 QVKKISDLRRMCLEKGVNPWIEVDGGVGP-KNAYKVP 244 (246)
Q Consensus 209 ~l~KI~~lr~l~~~~~~~~~I~VDGGI~~-e~i~~l~ 244 (246)
.++++++. . +..+.+=||++. +.+.++.
T Consensus 179 l~~~l~~~---~-----~~pviasGGv~s~~Dl~~l~ 207 (241)
T PRK14114 179 LTRKIAIE---A-----EVKVFAAGGISSENSLKTAQ 207 (241)
T ss_pred HHHHHHHH---C-----CCCEEEECCCCCHHHHHHHH
Confidence 87766542 1 346788899875 5555543
No 74
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=95.82 E-value=0.29 Score=44.77 Aligned_cols=152 Identities=19% Similarity=0.097 Sum_probs=96.4
Q ss_pred HHHHHHHHcCCCEEEe-eeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEEEccCCccc-
Q 025927 74 EQVKAVELAGCDWIHV-DVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST- 151 (246)
Q Consensus 74 ~~i~~l~~~g~d~lHi-DIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It~H~E~~~~- 151 (246)
+..+..++.|++|+|+ |. | -. ..+.|++|.+.+++|+.+===+ +. ..++.+.++||+.+.+=--+...
T Consensus 42 ~~A~~~~~~Ga~~lHvVDL--g-----~~-n~~~i~~i~~~~~~~v~vGGGI-r~-e~v~~~l~aGa~rVvIGS~av~~~ 111 (253)
T TIGR02129 42 YYAKLYKDDGVKGCHVIML--G-----PN-NDDAAKEALHAYPGGLQVGGGI-ND-TNAQEWLDEGASHVIVTSWLFTKG 111 (253)
T ss_pred HHHHHHHHcCCCEEEEEEC--C-----CC-cHHHHHHHHHhCCCCEEEeCCc-CH-HHHHHHHHcCCCEEEECcHHHhCC
Confidence 4567778999999995 77 2 12 5688888887766665544444 44 77889999999999986532211
Q ss_pred -ccHHHHHHHHHHcC---CcEE------------EEEcCC---CC---h-HHHHHhhhhcceEEEEeecCCCCCCcccHH
Q 025927 152 -IHLHRTLNQIKDLG---AKAG------------VVLNPA---TS---L-SAIECVLDVVDLVLIMSVNPGFGGQSFIES 208 (246)
Q Consensus 152 -~~~~~~i~~Ik~~G---~k~G------------lAlnP~---Tp---v-e~l~~~l~~vD~VLvMsV~PGfgGQ~F~~~ 208 (246)
.++..+-+..++.| +-++ ++++-. |. + +.++.+-+.+.-|++=.|+-.-..|-++-+
T Consensus 112 ~i~~~~~~~i~~~fG~~~IvvsiD~k~~~~g~~~V~~~GW~~~t~~~~~~e~~~~~~~~~~~il~TdI~rDGtl~G~dle 191 (253)
T TIGR02129 112 KFDLKRLKEIVSLVGKDRLIVDLSCRKTQDGRWIVAMNKWQTITDLELNAETLEELSKYCDEFLIHAADVEGLCKGIDEE 191 (253)
T ss_pred CCCHHHHHHHHHHhCCCCEEEEEEEEEcCCCcEEEEECCCcccCCCChHHHHHHHHHhhCCEEEEeeecccCccccCCHH
Confidence 01333444445554 2222 333322 22 3 344455444788999999987778888888
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEeCCCC-hhhhhhc
Q 025927 209 QVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKV 243 (246)
Q Consensus 209 ~l~KI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~l 243 (246)
.++++.+. .+..+..=||++ .+.+.++
T Consensus 192 l~~~l~~~--------~~ipVIASGGv~s~eDi~~l 219 (253)
T TIGR02129 192 LVSKLGEW--------SPIPITYAGGAKSIDDLDLV 219 (253)
T ss_pred HHHHHHhh--------CCCCEEEECCCCCHHHHHHH
Confidence 88777543 234678889985 4455443
No 75
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=95.75 E-value=0.22 Score=49.08 Aligned_cols=146 Identities=16% Similarity=0.149 Sum_probs=93.2
Q ss_pred HHHHHHHHcCCCEEEeeeccCcccCCC--CCCHHHHhhcccCCCCCeeEEEeccCcccch-HHHHhcCCCEEEEccCCcc
Q 025927 74 EQVKAVELAGCDWIHVDVMDGRFVPNI--TIGPLVVDALRPVTDLPLDVHLMIVEPEQRV-PDFIKAGADIVSVHCEQSS 150 (246)
Q Consensus 74 ~~i~~l~~~g~d~lHiDIMDG~FVpN~--tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i-~~~~~agad~It~H~E~~~ 150 (246)
++++.+.++|+|++=+= |.|.- ...++..+.|.+.... --|=+.+..+...+ +.+.+++.|++-+|-..
T Consensus 268 eda~~a~~~GaD~lGfI-----f~~~SpR~V~~~~a~~i~~~l~v-~~VgVfv~~~~~~i~~i~~~~~lD~vQLHG~e-- 339 (454)
T PRK09427 268 QDAKAAYDAGAVYGGLI-----FVEKSPRYVSLEQAQEIIAAAPL-RYVGVFRNADIEDIVDIAKQLSLAAVQLHGDE-- 339 (454)
T ss_pred HHHHHHHhCCCCEEeeE-----eCCCCCCCCCHHHHHHHHHhCCC-CEEEEEeCCCHHHHHHHHHHcCCCEEEeCCCC--
Confidence 56677788999999882 54432 3567788877664332 12555555444444 44567899999999752
Q ss_pred cccHHHHHHHHHHc---CCcEEEEEcCCCChHHHHHhhhhcceEEEEeecCCCCCCcccHHHHHHHHHHHHHHHhcCCCC
Q 025927 151 TIHLHRTLNQIKDL---GAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNP 227 (246)
Q Consensus 151 ~~~~~~~i~~Ik~~---G~k~GlAlnP~Tpve~l~~~l~~vD~VLvMsV~PGfgGQ~F~~~~l~KI~~lr~l~~~~~~~~ 227 (246)
.+ ..++.+++. ++++-=++....... ..++ ..+|++|+=+ .+|-.|+.|+-..+.. .. ..
T Consensus 340 --~~-~~~~~l~~~~~~~~~iikai~v~~~~~-~~~~-~~~d~~LlDs-~~GGtG~~~DW~~l~~------~~-----~~ 402 (454)
T PRK09427 340 --DQ-AYIDALREALPKTCQIWKAISVGDTLP-ARDL-QHVDRYLLDN-GQGGTGQTFDWSLLPG------QS-----LD 402 (454)
T ss_pred --CH-HHHHHHHhhcCCCCeEEEEeecCchhh-hhhh-cCCCEEEEcC-CCCCCCCccChHHhhh------cc-----cC
Confidence 22 345666653 466666676654333 2233 2489988877 6677899998765431 11 12
Q ss_pred eEEEeCCCChhhhhhcc
Q 025927 228 WIEVDGGVGPKNAYKVP 244 (246)
Q Consensus 228 ~I~VDGGI~~e~i~~l~ 244 (246)
.+.+=||+|++|+.+.+
T Consensus 403 p~iLAGGL~peNV~~ai 419 (454)
T PRK09427 403 NVLLAGGLNPDNCQQAA 419 (454)
T ss_pred CEEEECCCCHHHHHHHH
Confidence 46789999999998754
No 76
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=95.65 E-value=0.2 Score=47.92 Aligned_cols=108 Identities=19% Similarity=0.308 Sum_probs=64.8
Q ss_pred cccchHHHHhcCCCEEEEccCCc-----cc-ccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhh-hcceEEEEeecCC
Q 025927 127 PEQRVPDFIKAGADIVSVHCEQS-----ST-IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPG 199 (246)
Q Consensus 127 P~~~i~~~~~agad~It~H~E~~-----~~-~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~-~vD~VLvMsV~PG 199 (246)
-.++++.+.++|+|.|++|.-+. .. .++..+.+.+|+.++.+ ++ .--.+.+..+.+++ -+|.|.+ ...||
T Consensus 143 ~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~~ipV-Ia-G~V~t~e~A~~l~~aGAD~V~V-G~G~G 219 (368)
T PRK08649 143 AQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYELDVPV-IV-GGCVTYTTALHLMRTGAAGVLV-GIGPG 219 (368)
T ss_pred HHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHCCCCE-EE-eCCCCHHHHHHHHHcCCCEEEE-CCCCC
Confidence 34677788999999999997321 01 25778888888888775 33 23455666666665 4999966 67776
Q ss_pred C--CCCcc----cHHHHHHHHHH----HHHHHhc-CCCCeEEEeCCCChh
Q 025927 200 F--GGQSF----IESQVKKISDL----RRMCLEK-GVNPWIEVDGGVGPK 238 (246)
Q Consensus 200 f--gGQ~F----~~~~l~KI~~l----r~l~~~~-~~~~~I~VDGGI~~e 238 (246)
. .+... .| .+.-|.+. +++..+. +.+..|-.||||+..
T Consensus 220 s~~~t~~~~g~g~p-~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~ 268 (368)
T PRK08649 220 AACTSRGVLGIGVP-MATAIADVAAARRDYLDETGGRYVHVIADGGIGTS 268 (368)
T ss_pred cCCCCcccCCCCcC-HHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCH
Confidence 3 11111 12 23233333 2333322 234678899999643
No 77
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=95.59 E-value=0.45 Score=42.48 Aligned_cols=164 Identities=16% Similarity=0.132 Sum_probs=93.0
Q ss_pred cccChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEEE
Q 025927 65 LSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSV 144 (246)
Q Consensus 65 l~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It~ 144 (246)
+..|+.++ ++.+++.|++++|+==.|+.-- .-....+.++++++.+++|+.+===+.+++. ++.+.+.|++.+.+
T Consensus 28 ~~~d~~~~---a~~~~~~G~~~i~i~dl~~~~~-~~~~~~~~i~~i~~~~~ipv~~~GGi~s~~~-~~~~l~~Ga~~Vii 102 (253)
T PRK02083 28 DAGDPVEL---AKRYNEEGADELVFLDITASSE-GRDTMLDVVERVAEQVFIPLTVGGGIRSVED-ARRLLRAGADKVSI 102 (253)
T ss_pred ecCCHHHH---HHHHHHcCCCEEEEEeCCcccc-cCcchHHHHHHHHHhCCCCEEeeCCCCCHHH-HHHHHHcCCCEEEE
Confidence 34455555 5556788999999744443211 1145567888887766655433223445444 45566689999999
Q ss_pred ccCCcccccHHHHHHHHHHcC-CcEEEEEc--C------------------C-CChHHHHHhhhh-cceEEEEeecCCCC
Q 025927 145 HCEQSSTIHLHRTLNQIKDLG-AKAGVVLN--P------------------A-TSLSAIECVLDV-VDLVLIMSVNPGFG 201 (246)
Q Consensus 145 H~E~~~~~~~~~~i~~Ik~~G-~k~GlAln--P------------------~-Tpve~l~~~l~~-vD~VLvMsV~PGfg 201 (246)
--+.. .++..+-+..+..| =++-++++ . + ++.+.++.+.+. +|.+++.++...-.
T Consensus 103 gt~~l--~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~ii~~~i~~~g~ 180 (253)
T PRK02083 103 NSAAV--ANPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMDRDGT 180 (253)
T ss_pred ChhHh--hCcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHHHHHHcCCCEEEEcCCcCCCC
Confidence 87743 45544444444444 23334443 1 1 223444444333 79999988876445
Q ss_pred CCcccHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCh-hhhhhc
Q 025927 202 GQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP-KNAYKV 243 (246)
Q Consensus 202 GQ~F~~~~l~KI~~lr~l~~~~~~~~~I~VDGGI~~-e~i~~l 243 (246)
+|.++-+.++++ ++.. +..+.+=||++. +.+.++
T Consensus 181 ~~g~d~~~i~~~---~~~~-----~ipvia~GGv~s~~d~~~~ 215 (253)
T PRK02083 181 KNGYDLELTRAV---SDAV-----NVPVIASGGAGNLEHFVEA 215 (253)
T ss_pred CCCcCHHHHHHH---HhhC-----CCCEEEECCCCCHHHHHHH
Confidence 566654444433 3321 345778888865 445443
No 78
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=95.57 E-value=0.65 Score=41.86 Aligned_cols=158 Identities=18% Similarity=0.138 Sum_probs=91.8
Q ss_pred hhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhccc---CCCCCeeEEEeccCcccchHHHHhcCCCEEEEcc
Q 025927 70 AKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRP---VTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHC 146 (246)
Q Consensus 70 ~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~---~t~~plDvHLMV~~P~~~i~~~~~agad~It~H~ 146 (246)
..+-++++.+.+.|+..+|+= ..|.. |+-.--.+.++.+++ ..++.+-+|.-..+ ...++.+.++|++.+.+=+
T Consensus 65 eei~~~~~~~~~~g~~~~~l~-~~g~~-~~~~~~~~~~~~i~~~~~~~~i~~~~~~g~~~-~e~l~~Lk~aG~~~v~i~~ 141 (296)
T TIGR00433 65 DEVLEEARKAKAAGATRFCLV-ASGRG-PKDREFMEYVEAMVQIVEEMGLKTCATLGLLD-PEQAKRLKDAGLDYYNHNL 141 (296)
T ss_pred HHHHHHHHHHHHCCCCEEEEE-EecCC-CChHHHHHHHHHHHHHHHhCCCeEEecCCCCC-HHHHHHHHHcCCCEEEEcc
Confidence 456677777788899888852 22322 322111445666643 23455555543223 4567899999999999888
Q ss_pred CCcc-----------cccHHHHHHHHHHcCCcEEEE--EcCCCChHHHHHhhh-----hcceEEE--EeecCCC--CCC-
Q 025927 147 EQSS-----------TIHLHRTLNQIKDLGAKAGVV--LNPATSLSAIECVLD-----VVDLVLI--MSVNPGF--GGQ- 203 (246)
Q Consensus 147 E~~~-----------~~~~~~~i~~Ik~~G~k~GlA--lnP~Tpve~l~~~l~-----~vD~VLv--MsV~PGf--gGQ- 203 (246)
|... .++..+.++.++++|++++.. +.++...+.+...+. .+|.|-+ +...||- ...
T Consensus 142 E~~~~~~~~i~~~~s~~~~~~ai~~l~~~Gi~v~~~~i~Gl~et~~d~~~~~~~l~~l~~~~i~l~~l~p~~gT~l~~~~ 221 (296)
T TIGR00433 142 DTSQEFYSNIISTHTYDDRVDTLENAKKAGLKVCSGGIFGLGETVEDRIGLALALANLPPESVPINFLVKIKGTPLADNK 221 (296)
T ss_pred cCCHHHHhhccCCCCHHHHHHHHHHHHHcCCEEEEeEEEeCCCCHHHHHHHHHHHHhCCCCEEEeeeeEEcCCCccCCCC
Confidence 8310 012345688889999987533 444555555555443 2565544 4444553 221
Q ss_pred ccc-HHHHHHHHHHHHHHHhcCCCCeEEEeCC
Q 025927 204 SFI-ESQVKKISDLRRMCLEKGVNPWIEVDGG 234 (246)
Q Consensus 204 ~F~-~~~l~KI~~lr~l~~~~~~~~~I~VDGG 234 (246)
+.. .+.++.+..+|.+++.. .|-+.||
T Consensus 222 ~~s~~~~~~~ia~~r~~lp~~----~i~~~~~ 249 (296)
T TIGR00433 222 ELSADDALKTIALARIIMPKA----EIRLAGG 249 (296)
T ss_pred CCCHHHHHHHHHHHHHHCCcc----eEEEeCC
Confidence 122 36778888888887653 3556655
No 79
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=95.51 E-value=0.64 Score=44.66 Aligned_cols=126 Identities=17% Similarity=0.206 Sum_probs=72.8
Q ss_pred HHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEEEccCC------cccccHHHHHHHHHHcCCcEEEEEcCCCChH
Q 025927 106 VVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQ------SSTIHLHRTLNQIKDLGAKAGVVLNPATSLS 179 (246)
Q Consensus 106 ~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It~H~E~------~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve 179 (246)
.++++|+. ...+=+-+--.+..++.+.+.++|+|.|++|--. ....++..+.+.+++.++.+- + .--.+.+
T Consensus 124 ii~~vr~a-~VtvkiRl~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~~IPVI-~-G~V~t~e 200 (369)
T TIGR01304 124 RIAEVRDS-GVITAVRVSPQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGELDVPVI-A-GGVNDYT 200 (369)
T ss_pred HHHHHHhc-ceEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHCCCCEE-E-eCCCCHH
Confidence 45666663 2222233311345577788899999999999421 012357778888888887663 2 3345566
Q ss_pred HHHHhhh-hcceEEEEeecCCCC--CCcc----cH--HHHHHHHHH-HHHHHhcC-CCCeEEEeCCCCh
Q 025927 180 AIECVLD-VVDLVLIMSVNPGFG--GQSF----IE--SQVKKISDL-RRMCLEKG-VNPWIEVDGGVGP 237 (246)
Q Consensus 180 ~l~~~l~-~vD~VLvMsV~PGfg--GQ~F----~~--~~l~KI~~l-r~l~~~~~-~~~~I~VDGGI~~ 237 (246)
....++. -+|.|+ +-+|-+ +... .| ..+..+..+ ++++++.+ ....+-.||||+.
T Consensus 201 ~A~~~~~aGaDgV~---~G~gg~~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~t 266 (369)
T TIGR01304 201 TALHLMRTGAAGVI---VGPGGANTTRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIET 266 (369)
T ss_pred HHHHHHHcCCCEEE---ECCCCCcccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCC
Confidence 6666665 589887 222211 1111 22 234444444 34556655 3356889999975
No 80
>PLN02363 phosphoribosylanthranilate isomerase
Probab=95.50 E-value=0.4 Score=43.75 Aligned_cols=155 Identities=17% Similarity=0.181 Sum_probs=92.5
Q ss_pred hhhHHHHHHHHHHcCCCEEEeeeccCcccCCC--CCCHHHHhhcccCCC-CCe-eEEEeccCcc-cchHHHHhcCCCEEE
Q 025927 69 FAKLGEQVKAVELAGCDWIHVDVMDGRFVPNI--TIGPLVVDALRPVTD-LPL-DVHLMIVEPE-QRVPDFIKAGADIVS 143 (246)
Q Consensus 69 ~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~--tfgp~~I~~ir~~t~-~pl-DvHLMV~~P~-~~i~~~~~agad~It 143 (246)
+.+. ++++.+.++|+|++=+ .|.|+- ...++..++|.+... ..+ -|=+.+..+. ..++.+.+.|.|.|-
T Consensus 54 it~~-eda~~a~~~GaD~iGf-----If~~~SpR~Vs~e~a~~I~~~l~~~~~~~VgVfv~~~~~~I~~~~~~~~ld~VQ 127 (256)
T PLN02363 54 ITSA-RDAAMAVEAGADFIGM-----ILWPKSKRSISLSVAKEISQVAREGGAKPVGVFVDDDANTILRAADSSDLELVQ 127 (256)
T ss_pred CCcH-HHHHHHHHcCCCEEEE-----ecCCCCCCcCCHHHHHHHHHhccccCccEEEEEeCCCHHHHHHHHHhcCCCEEE
Confidence 3444 6677778899999988 355652 356777777755321 111 2545555444 455555678999999
Q ss_pred EccCCcccccHHHHHHHHHHcCCcEEEEEcCCCCh---HHHHH-hhhhcceEEEEeecCCCCCCcccHHHHHHHHHHHHH
Q 025927 144 VHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSL---SAIEC-VLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRM 219 (246)
Q Consensus 144 ~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpv---e~l~~-~l~~vD~VLvMsV~PGfgGQ~F~~~~l~KI~~lr~l 219 (246)
+|-.. ++ ..++.+++ ++++==+++..... +.+.+ +-..+|++|+=+- .|-.|+.|.-..+.. ..+
T Consensus 128 LHG~e----~~-~~~~~l~~-~~~iikai~v~~~~~~~~~~~~~~~~~~D~~LlDs~-~GGtG~t~DW~~l~~----~~~ 196 (256)
T PLN02363 128 LHGNG----SR-AAFSRLVR-ERKVIYVLNANEDGKLLNVVPEEDCHLADWILVDSA-TGGSGKGFNWQNFKL----PSV 196 (256)
T ss_pred ECCCC----CH-HHHHHhhc-CCcEEEEEEECchHHHHHHHHhhccccCCEEEEeCC-CCCCCCccCHHHhcc----ccc
Confidence 99652 22 23455552 35555555554332 33333 2235899888874 477789998754421 011
Q ss_pred HHhcCCCCeEEEeCCCChhhhhhcc
Q 025927 220 CLEKGVNPWIEVDGGVGPKNAYKVP 244 (246)
Q Consensus 220 ~~~~~~~~~I~VDGGI~~e~i~~l~ 244 (246)
.. .....+-||++++|+.+.+
T Consensus 197 ~~----~~p~iLAGGL~peNV~~ai 217 (256)
T PLN02363 197 RS----RNGWLLAGGLTPENVHEAV 217 (256)
T ss_pred cc----CCCEEEECCCCHHHHHHHH
Confidence 11 1236789999999998865
No 81
>PLN02389 biotin synthase
Probab=95.48 E-value=0.33 Score=46.61 Aligned_cols=162 Identities=14% Similarity=0.142 Sum_probs=94.2
Q ss_pred cChhhHHHHHHHHHHcCCCEEEeeeccCcc--cCCCCCCHHHHhhcccCCCCCeeEEEecc-CcccchHHHHhcCCCEEE
Q 025927 67 ANFAKLGEQVKAVELAGCDWIHVDVMDGRF--VPNITIGPLVVDALRPVTDLPLDVHLMIV-EPEQRVPDFIKAGADIVS 143 (246)
Q Consensus 67 aD~~~l~~~i~~l~~~g~d~lHiDIMDG~F--VpN~tfgp~~I~~ir~~t~~plDvHLMV~-~P~~~i~~~~~agad~It 143 (246)
.+...+.+.++.+.+.|+..+|+ +..|+. -+...| ..+++.++.+....+.++.-.- -....++.|.++|+|.+.
T Consensus 116 Ls~EeIl~~a~~~~~~G~~~~~i-vts~rg~~~e~~~~-e~i~eiir~ik~~~l~i~~s~G~l~~E~l~~LkeAGld~~~ 193 (379)
T PLN02389 116 MSKDDVLEAAKRAKEAGSTRFCM-GAAWRDTVGRKTNF-NQILEYVKEIRGMGMEVCCTLGMLEKEQAAQLKEAGLTAYN 193 (379)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEE-EecccCCCCChhHH-HHHHHHHHHHhcCCcEEEECCCCCCHHHHHHHHHcCCCEEE
Confidence 56777888888888899999997 333322 111122 2333333332223344542211 123567788999999988
Q ss_pred EccCCcc--------c---ccHHHHHHHHHHcCCcE--EEEEcCCCChHHHHHh---hh----hcceEEEEeecC--CC-
Q 025927 144 VHCEQSS--------T---IHLHRTLNQIKDLGAKA--GVVLNPATSLSAIECV---LD----VVDLVLIMSVNP--GF- 200 (246)
Q Consensus 144 ~H~E~~~--------~---~~~~~~i~~Ik~~G~k~--GlAlnP~Tpve~l~~~---l~----~vD~VLvMsV~P--Gf- 200 (246)
.=+|+.. . ++..++++.+++.|+++ |+.+..+-..++.... +. .+|.|-+....| |-
T Consensus 194 ~~LeTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v~sg~IiGlgEt~edrv~~l~~Lr~L~~~~~~v~l~~l~P~~GTp 273 (379)
T PLN02389 194 HNLDTSREYYPNVITTRSYDDRLETLEAVREAGISVCSGGIIGLGEAEEDRVGLLHTLATLPEHPESVPINALVAVKGTP 273 (379)
T ss_pred eeecCChHHhCCcCCCCCHHHHHHHHHHHHHcCCeEeEEEEECCCCCHHHHHHHHHHHHhcccCCcEEecccceecCCCc
Confidence 7777420 1 12347888899999998 7777776655553332 22 246666655555 42
Q ss_pred -CCC-cccH-HHHHHHHHHHHHHHhcCCCCeEEEeCC
Q 025927 201 -GGQ-SFIE-SQVKKISDLRRMCLEKGVNPWIEVDGG 234 (246)
Q Consensus 201 -gGQ-~F~~-~~l~KI~~lr~l~~~~~~~~~I~VDGG 234 (246)
.+. +..+ +.++.|.-+|-+++++. |-+-||
T Consensus 274 L~~~~~~s~~e~lr~iAi~Rl~lP~~~----i~i~~g 306 (379)
T PLN02389 274 LEDQKPVEIWEMVRMIATARIVMPKAM----VRLSAG 306 (379)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCcc----cccccc
Confidence 222 2333 66777877788876653 444465
No 82
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=95.43 E-value=0.7 Score=40.64 Aligned_cols=158 Identities=16% Similarity=0.111 Sum_probs=101.4
Q ss_pred EEeeeecccChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCC--eeEEEeccCcccchHHHHh
Q 025927 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLP--LDVHLMIVEPEQRVPDFIK 136 (246)
Q Consensus 59 ~IsPSIl~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~p--lDvHLMV~~P~~~i~~~~~ 136 (246)
.+-|=+-..+..++.+.++.+.+.|+..+-+=. ++. -+.+.|+.+++...-+ +=+.= |-+++ .++...+
T Consensus 11 ~~~~v~r~~~~~~~~~~~~a~~~gGi~~iEvt~-~~~------~~~~~i~~l~~~~~~~~~iGaGT-V~~~~-~~~~a~~ 81 (206)
T PRK09140 11 PLIAILRGITPDEALAHVGALIEAGFRAIEIPL-NSP------DPFDSIAALVKALGDRALIGAGT-VLSPE-QVDRLAD 81 (206)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeC-CCc------cHHHHHHHHHHHcCCCcEEeEEe-cCCHH-HHHHHHH
Confidence 344556666888899999999999999998863 222 2345677776532211 11110 33444 4678899
Q ss_pred cCCCEEEEccCCcccccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhhhcceEEEEeecCCCCCCcccHHHHHHHHHH
Q 025927 137 AGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDL 216 (246)
Q Consensus 137 agad~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~~vD~VLvMsV~PGfgGQ~F~~~~l~KI~~l 216 (246)
+|++.+...... ..+++..++.|..++.. ..|+-|..+-+-.-+|+|-+ |....+- ++.++.+
T Consensus 82 aGA~fivsp~~~------~~v~~~~~~~~~~~~~G--~~t~~E~~~A~~~Gad~vk~------Fpa~~~G---~~~l~~l 144 (206)
T PRK09140 82 AGGRLIVTPNTD------PEVIRRAVALGMVVMPG--VATPTEAFAALRAGAQALKL------FPASQLG---PAGIKAL 144 (206)
T ss_pred cCCCEEECCCCC------HHHHHHHHHCCCcEEcc--cCCHHHHHHHHHcCCCEEEE------CCCCCCC---HHHHHHH
Confidence 999988876541 24566777788776666 56775555544456899886 3333333 3344555
Q ss_pred HHHHHhcCCCCeEEEeCCCChhhhhhccc
Q 025927 217 RRMCLEKGVNPWIEVDGGVGPKNAYKVPN 245 (246)
Q Consensus 217 r~l~~~~~~~~~I~VDGGI~~e~i~~l~~ 245 (246)
++.++ .+..+..=||||.+|++++.+
T Consensus 145 ~~~~~---~~ipvvaiGGI~~~n~~~~~~ 170 (206)
T PRK09140 145 RAVLP---PDVPVFAVGGVTPENLAPYLA 170 (206)
T ss_pred HhhcC---CCCeEEEECCCCHHHHHHHHH
Confidence 55543 135788999999999998754
No 83
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=95.38 E-value=0.1 Score=44.30 Aligned_cols=163 Identities=15% Similarity=0.121 Sum_probs=86.8
Q ss_pred EEeeeecccChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcC
Q 025927 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAG 138 (246)
Q Consensus 59 ~IsPSIl~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~ag 138 (246)
.|+|..++ ...+.+.++.+-+.|++++|+-.-|..- .-=...++.++..+. ...+.|++.+ +++...+.|
T Consensus 4 ~it~~~~~--~~~~~~~~~~~~~~g~~~v~lR~~~~~~----~~~~~~~~~l~~~~~-~~~~~l~i~~---~~~la~~~g 73 (196)
T TIGR00693 4 LITDPQDG--PADLLNRVEAALKGGVTLVQLRDKGSNT----RERLALAEKLQELCR-RYGVPFIVND---RVDLALALG 73 (196)
T ss_pred EEECCccc--cccHHHHHHHHHhcCCCEEEEecCCCCH----HHHHHHHHHHHHHHH-HhCCeEEEEC---HHHHHHHcC
Confidence 46666443 2346678888888999999997543210 000123334443321 2245566655 456667889
Q ss_pred CCEEEEccCCcccccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhh-hcceEEEEeecC-CC-CC--CcccHHHHHHH
Q 025927 139 ADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNP-GF-GG--QSFIESQVKKI 213 (246)
Q Consensus 139 ad~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~-~vD~VLvMsV~P-Gf-gG--Q~F~~~~l~KI 213 (246)
++.+.+-... .+. ...+.....+..+|+... +. +++....+ .+|+|.+=.+-| +. .+ .... ++.+
T Consensus 74 ~~GvHl~~~~---~~~-~~~r~~~~~~~~ig~s~h--~~-~e~~~a~~~g~dyi~~~~v~~t~~k~~~~~~~g---~~~l 143 (196)
T TIGR00693 74 ADGVHLGQDD---LPA-SEARALLGPDKIIGVSTH--NL-EELAEAEAEGADYIGFGPIFPTPTKKDPAPPAG---VELL 143 (196)
T ss_pred CCEEecCccc---CCH-HHHHHhcCCCCEEEEeCC--CH-HHHHHHhHcCCCEEEECCccCCCCCCCCCCCCC---HHHH
Confidence 9987664331 122 222322334556665544 33 44444433 689988633332 11 11 1122 3344
Q ss_pred HHHHHHHHhcCCCCeEEEeCCCChhhhhhccc
Q 025927 214 SDLRRMCLEKGVNPWIEVDGGVGPKNAYKVPN 245 (246)
Q Consensus 214 ~~lr~l~~~~~~~~~I~VDGGI~~e~i~~l~~ 245 (246)
+++++... +..+.+=|||+.+|++++.+
T Consensus 144 ~~~~~~~~----~~pv~a~GGI~~~~~~~~~~ 171 (196)
T TIGR00693 144 REIAATSI----DIPIVAIGGITLENAAEVLA 171 (196)
T ss_pred HHHHHhcC----CCCEEEECCcCHHHHHHHHH
Confidence 44444332 24577889999999988753
No 84
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=95.36 E-value=1.1 Score=40.43 Aligned_cols=162 Identities=14% Similarity=0.070 Sum_probs=94.3
Q ss_pred hHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEEEccCCcc
Q 025927 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS 150 (246)
Q Consensus 71 ~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It~H~E~~~ 150 (246)
+..+.++.+++.|++++|+==.|+.-. .-.-..++++++.+.++.|+.+===+..++. ++.+..+|++.+.+=.+.
T Consensus 31 dp~~~a~~~~~~g~~~l~i~Dl~~~~~-~~~~n~~~i~~i~~~~~~pv~~gGGi~s~~d-~~~l~~~G~~~vvigs~~-- 106 (258)
T PRK01033 31 DPINAVRIFNEKEVDELIVLDIDASKR-GSEPNYELIENLASECFMPLCYGGGIKTLEQ-AKKIFSLGVEKVSINTAA-- 106 (258)
T ss_pred CHHHHHHHHHHcCCCEEEEEECCCCcC-CCcccHHHHHHHHHhCCCCEEECCCCCCHHH-HHHHHHCCCCEEEEChHH--
Confidence 555667888999999999733344331 1223467888887766666422222223333 455667899999987664
Q ss_pred cccHHHHHHHHHHcC-CcEEEEEcC--------------------CCChHHHHHhhhh-cceEEEEeecCCCCCCcccHH
Q 025927 151 TIHLHRTLNQIKDLG-AKAGVVLNP--------------------ATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIES 208 (246)
Q Consensus 151 ~~~~~~~i~~Ik~~G-~k~GlAlnP--------------------~Tpve~l~~~l~~-vD~VLvMsV~PGfgGQ~F~~~ 208 (246)
..++..+-+.+++.| -++.++++. ..+.+.++.+.+. ++.++++.+.-.-..+.++-+
T Consensus 107 ~~~~~~~~~~~~~~~~~~i~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~~~i~~~G~~~G~d~~ 186 (258)
T PRK01033 107 LEDPDLITEAAERFGSQSVVVSIDVKKNLGGKFDVYTHNGTKKLKKDPLELAKEYEALGAGEILLNSIDRDGTMKGYDLE 186 (258)
T ss_pred hcCHHHHHHHHHHhCCCcEEEEEEEecCCCCcEEEEEcCCeecCCCCHHHHHHHHHHcCCCEEEEEccCCCCCcCCCCHH
Confidence 344544444445544 234455542 1233444444333 899999988874444555555
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEeCCCCh-hhhhhcc
Q 025927 209 QVKKISDLRRMCLEKGVNPWIEVDGGVGP-KNAYKVP 244 (246)
Q Consensus 209 ~l~KI~~lr~l~~~~~~~~~I~VDGGI~~-e~i~~l~ 244 (246)
.+++++ +. .+..+.+=|||+. +.+.++.
T Consensus 187 ~i~~~~---~~-----~~ipvIasGGv~s~eD~~~l~ 215 (258)
T PRK01033 187 LLKSFR---NA-----LKIPLIALGGAGSLDDIVEAI 215 (258)
T ss_pred HHHHHH---hh-----CCCCEEEeCCCCCHHHHHHHH
Confidence 554443 32 2356788899865 5665553
No 85
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=95.24 E-value=1.7 Score=38.13 Aligned_cols=160 Identities=15% Similarity=0.106 Sum_probs=92.1
Q ss_pred hHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEEEccCCcc
Q 025927 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS 150 (246)
Q Consensus 71 ~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It~H~E~~~ 150 (246)
+..+.++.+++.|++++|+==.|+..- .-....+.++.+++.++.|+.+==-+...+. ++.+.+.|++.+.+=-+.
T Consensus 31 dp~~~a~~~~~~g~~~i~i~dl~~~~~-~~~~n~~~~~~i~~~~~~pv~~~ggi~~~~d-~~~~~~~G~~~vilg~~~-- 106 (232)
T TIGR03572 31 DPVNAARIYNAKGADELIVLDIDASKR-GREPLFELISNLAEECFMPLTVGGGIRSLED-AKKLLSLGADKVSINTAA-- 106 (232)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCCccc-CCCCCHHHHHHHHHhCCCCEEEECCCCCHHH-HHHHHHcCCCEEEEChhH--
Confidence 445557777899999998733344321 1245567888888877777644334444443 445677899999887664
Q ss_pred cccHHHHHHHHHHcCCc---EEEEEcCC----------------C---ChHHHHHhhhh-cceEEEEeecCCCCCCcccH
Q 025927 151 TIHLHRTLNQIKDLGAK---AGVVLNPA----------------T---SLSAIECVLDV-VDLVLIMSVNPGFGGQSFIE 207 (246)
Q Consensus 151 ~~~~~~~i~~Ik~~G~k---~GlAlnP~----------------T---pve~l~~~l~~-vD~VLvMsV~PGfgGQ~F~~ 207 (246)
..++..+-+..++.|-+ +.+-++.+ | +++..+.+.+. +|.|++.++.+.-.++.+.-
T Consensus 107 l~~~~~~~~~~~~~~~~~i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~G~d~i~i~~i~~~g~~~g~~~ 186 (232)
T TIGR03572 107 LENPDLIEEAARRFGSQCVVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAREAEQLGAGEILLNSIDRDGTMKGYDL 186 (232)
T ss_pred hcCHHHHHHHHHHcCCceEEEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEeCCCccCCcCCCCH
Confidence 34554444444554533 23333221 1 23444444332 89999999887544444544
Q ss_pred HHHHHHHHHHHHHHhcCCCCeEEEeCCCC-hhhhhh
Q 025927 208 SQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYK 242 (246)
Q Consensus 208 ~~l~KI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~ 242 (246)
+.+++++ +.. +..+.+=|||+ .+.+.+
T Consensus 187 ~~~~~i~---~~~-----~ipvia~GGi~s~~di~~ 214 (232)
T TIGR03572 187 ELIKTVS---DAV-----SIPVIALGGAGSLDDLVE 214 (232)
T ss_pred HHHHHHH---hhC-----CCCEEEECCCCCHHHHHH
Confidence 4444443 221 34577889987 344443
No 86
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=95.15 E-value=0.43 Score=44.03 Aligned_cols=179 Identities=17% Similarity=0.205 Sum_probs=121.1
Q ss_pred CCcEEeeeecccChh--hHHHHHHHHHHcCCCEEEee------eccCcccC---------CCCC--CHHHHhhccc-CCC
Q 025927 56 SDIIVSPSILSANFA--KLGEQVKAVELAGCDWIHVD------VMDGRFVP---------NITI--GPLVVDALRP-VTD 115 (246)
Q Consensus 56 ~~~~IsPSIl~aD~~--~l~~~i~~l~~~g~d~lHiD------IMDG~FVp---------N~tf--gp~~I~~ir~-~t~ 115 (246)
++..+-|=+.+.|+. ...+-++.|.++|+|.|-+= +.||-..- ++++ -.++++.+|+ ..+
T Consensus 15 ~~~a~i~yit~GdP~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~ 94 (265)
T COG0159 15 NRGALIPYVTAGDPDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVK 94 (265)
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCC
Confidence 345677888888743 56678888999999999985 47775432 2322 2456677774 356
Q ss_pred CCeeEEEeccCcc------cchHHHHhcCCCEEEEccCCcccccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhhhc-
Q 025927 116 LPLDVHLMIVEPE------QRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVV- 188 (246)
Q Consensus 116 ~plDvHLMV~~P~------~~i~~~~~agad~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~~v- 188 (246)
.|+-. |+-.||. +|++.+.++|+|-+.+.== ..++..++.+..+++|+..=.-..|.|+-+.++.+....
T Consensus 95 ~Pivl-m~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDL--P~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a~ 171 (265)
T COG0159 95 VPIVL-MTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDL--PPEESDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAAS 171 (265)
T ss_pred CCEEE-EEeccHHHHhhHHHHHHHHHHcCCCEEEeCCC--ChHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCC
Confidence 67543 4455883 5788889999998887511 123445678888999999999999999999999998877
Q ss_pred ceEEEEeecC--CCCCCcccHHHHHHHHHHHHHHHhcCCCCeEEEeCCCC-hhhhhhc
Q 025927 189 DLVLIMSVNP--GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKV 243 (246)
Q Consensus 189 D~VLvMsV~P--GfgGQ~F~~~~l~KI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~l 243 (246)
-+|-+.|+.+ |-..+ ....+.+.|+++|++.+ .-|.|==||+ .++++++
T Consensus 172 GFiY~vs~~GvTG~~~~-~~~~~~~~v~~vr~~~~-----~Pv~vGFGIs~~e~~~~v 223 (265)
T COG0159 172 GFIYYVSRMGVTGARNP-VSADVKELVKRVRKYTD-----VPVLVGFGISSPEQAAQV 223 (265)
T ss_pred CcEEEEecccccCCCcc-cchhHHHHHHHHHHhcC-----CCeEEecCcCCHHHHHHH
Confidence 5666666654 33333 22337778888888752 2354444553 3454444
No 87
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=95.10 E-value=0.39 Score=44.85 Aligned_cols=139 Identities=18% Similarity=0.217 Sum_probs=89.1
Q ss_pred CcEEeeeecccChhhHHHHHHHHHHcCCCEEEeeeccCcccCC---CC-C-----CHHHHhhcccCCCCCeeEEEec--c
Q 025927 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPN---IT-I-----GPLVVDALRPVTDLPLDVHLMI--V 125 (246)
Q Consensus 57 ~~~IsPSIl~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN---~t-f-----gp~~I~~ir~~t~~plDvHLMV--~ 125 (246)
+..+..|+...+.....+.++.++++|+|.+++-+- ..|+ .. . -.+.++++++.+++|+-+-|-- .
T Consensus 101 ~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~s---cpp~~~~~~g~~~~~~~~eil~~v~~~~~iPV~vKl~p~~~ 177 (334)
T PRK07565 101 DIPVIASLNGSSAGGWVDYARQIEQAGADALELNIY---YLPTDPDISGAEVEQRYLDILRAVKSAVSIPVAVKLSPYFS 177 (334)
T ss_pred CCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCC---CCCCCCCCccccHHHHHHHHHHHHHhccCCcEEEEeCCCch
Confidence 467889998888888888999999999999999762 1111 00 0 1356788888888887776532 1
Q ss_pred CcccchHHHHhcCCCEEEEccCCcccccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhhhcceEEEEeecCCCCCCcc
Q 025927 126 EPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSF 205 (246)
Q Consensus 126 ~P~~~i~~~~~agad~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~~vD~VLvMsV~PGfgGQ~F 205 (246)
+.....+.+.++|+|.|++|--. . + ..++ .+...++. .-|++|...
T Consensus 178 ~~~~~a~~l~~~G~dgI~~~n~~---~------------~----~~~d----~~~~~~~~-----------~~glsg~~~ 223 (334)
T PRK07565 178 NLANMAKRLDAAGADGLVLFNRF---Y------------Q----PDID----LETLEVVP-----------GLVLSTPAE 223 (334)
T ss_pred hHHHHHHHHHHcCCCeEEEECCc---C------------C----CCcC----hhhccccc-----------CCCCCCchh
Confidence 23455566677888888887221 0 0 0000 11111110 237889999
Q ss_pred cHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCh
Q 025927 206 IESQVKKISDLRRMCLEKGVNPWIEVDGGVGP 237 (246)
Q Consensus 206 ~~~~l~KI~~lr~l~~~~~~~~~I~VDGGI~~ 237 (246)
.|.+++-|+++++.. ++.|-.-|||..
T Consensus 224 ~~~al~~v~~~~~~~-----~ipIig~GGI~s 250 (334)
T PRK07565 224 LRLPLRWIAILSGRV-----GADLAATTGVHD 250 (334)
T ss_pred hhHHHHHHHHHHhhc-----CCCEEEECCCCC
Confidence 999998888777643 355777899863
No 88
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=95.05 E-value=0.13 Score=46.55 Aligned_cols=85 Identities=21% Similarity=0.244 Sum_probs=66.1
Q ss_pred CcEEeeeecccChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCC------CH----HHHhhcccCCCCCeeEEEeccC
Q 025927 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITI------GP----LVVDALRPVTDLPLDVHLMIVE 126 (246)
Q Consensus 57 ~~~IsPSIl~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tf------gp----~~I~~ir~~t~~plDvHLMV~~ 126 (246)
+..+.+||...+...+.+.++.++++|+|.+=+++- +||... .+ ++++++|+.+++|+-+-|-...
T Consensus 98 ~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~----cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~ 173 (289)
T cd02810 98 GQPLIASVGGSSKEDYVELARKIERAGAKALELNLS----CPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYF 173 (289)
T ss_pred CCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcC----CCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCC
Confidence 567899999999999999999999999999888874 555432 22 4677788877888888776543
Q ss_pred c----ccchHHHHhcCCCEEEEc
Q 025927 127 P----EQRVPDFIKAGADIVSVH 145 (246)
Q Consensus 127 P----~~~i~~~~~agad~It~H 145 (246)
. ...++.+.++|+|.|++|
T Consensus 174 ~~~~~~~~a~~l~~~Gad~i~~~ 196 (289)
T cd02810 174 DLEDIVELAKAAERAGADGLTAI 196 (289)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEE
Confidence 3 456777788999999998
No 89
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=95.02 E-value=0.56 Score=42.89 Aligned_cols=162 Identities=22% Similarity=0.284 Sum_probs=105.0
Q ss_pred hHHHHHHHHHHcCCCEEEeee-ccCcccCCCCCCHHHHhhc-------ccCCCCCeeEEEeccCcccchHHHHhcCCCEE
Q 025927 71 KLGEQVKAVELAGCDWIHVDV-MDGRFVPNITIGPLVVDAL-------RPVTDLPLDVHLMIVEPEQRVPDFIKAGADIV 142 (246)
Q Consensus 71 ~l~~~i~~l~~~g~d~lHiDI-MDG~FVpN~tfgp~~I~~i-------r~~t~~plDvHLMV~~P~~~i~~~~~agad~I 142 (246)
...++++.|+++|+|.+=+-= .|.-|... .+|+++.++ ++..++|+=|.++-.+|..-+.--..+|++.|
T Consensus 30 ~A~~ea~~l~~~GvDgiiveN~~D~Py~~~--~~~etvaaM~~i~~~v~~~~~~p~GVnvL~nd~~aalaiA~A~ga~FI 107 (254)
T PF03437_consen 30 RAVREAEALEEGGVDGIIVENMGDVPYPKR--VGPETVAAMARIAREVRREVSVPVGVNVLRNDPKAALAIAAATGADFI 107 (254)
T ss_pred HHHHHHHHHHHCCCCEEEEecCCCCCccCC--CCHHHHHHHHHHHHHHHHhCCCCEEeeeecCCCHHHHHHHHHhCCCEE
Confidence 345888999999999998854 67777655 788888754 55568999999999888877766666788865
Q ss_pred E--EccCCc------ccccHHHHHHHHHHcCCcE----EEEEcCCCCh-----HH-HHHhh--hhcceEEEEeecCCCCC
Q 025927 143 S--VHCEQS------STIHLHRTLNQIKDLGAKA----GVVLNPATSL-----SA-IECVL--DVVDLVLIMSVNPGFGG 202 (246)
Q Consensus 143 t--~H~E~~------~~~~~~~~i~~Ik~~G~k~----GlAlnP~Tpv-----e~-l~~~l--~~vD~VLvMsV~PGfgG 202 (246)
= .+.++. ......+++++=|+.|.++ ++..+-..++ ++ .+.-+ ...|-|.|-.-.- |
T Consensus 108 Rv~~~~g~~~~d~G~~~~~a~e~~r~R~~l~a~v~ilaDV~~kh~~~l~~~~~~~~~~~a~~~~~aDaviVtG~~T---G 184 (254)
T PF03437_consen 108 RVNVFVGAYVTDEGIIEGCAGELLRYRKRLGADVKILADVHVKHSSPLATRDLEEAAKDAVERGGADAVIVTGKAT---G 184 (254)
T ss_pred EecCEEceecccCccccccHHHHHHHHHHcCCCeEEEeeechhhcccCCCCCHHHHHHHHHHhcCCCEEEECCccc---C
Confidence 4 222221 1234567777766767552 3333333333 22 22221 2489888864433 4
Q ss_pred CcccHHHHHHHHHHHHHHHhcCCCCeEEEeCCCChhhhhhccc
Q 025927 203 QSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVPN 245 (246)
Q Consensus 203 Q~F~~~~l~KI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~l~~ 245 (246)
++= .+++|+++|+..+ .-+-|-+|+|.+|+.++.+
T Consensus 185 ~~~---~~~~l~~vr~~~~-----~PVlvGSGvt~~Ni~~~l~ 219 (254)
T PF03437_consen 185 EPP---DPEKLKRVREAVP-----VPVLVGSGVTPENIAEYLS 219 (254)
T ss_pred CCC---CHHHHHHHHhcCC-----CCEEEecCCCHHHHHHHHH
Confidence 443 4555566666543 3577999999999988643
No 90
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=94.91 E-value=0.77 Score=40.41 Aligned_cols=149 Identities=19% Similarity=0.182 Sum_probs=91.8
Q ss_pred ChhhHHHHHHHHHHcCCCEEEeeeccC-cccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEEEcc
Q 025927 68 NFAKLGEQVKAVELAGCDWIHVDVMDG-RFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHC 146 (246)
Q Consensus 68 D~~~l~~~i~~l~~~g~d~lHiDIMDG-~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It~H~ 146 (246)
+.....+-++.|.+.|++++=+=..-. ..+|.+.-..+.++.+++... ..-+-.|+.+-.+.++...++|++.|.+-.
T Consensus 17 s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~-~~~~~~l~~~~~~~i~~a~~~g~~~i~i~~ 95 (265)
T cd03174 17 STEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVP-NVKLQALVRNREKGIERALEAGVDEVRIFD 95 (265)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccC-CcEEEEEccCchhhHHHHHhCCcCEEEEEE
Confidence 334555667888888988654421111 111333445667888876431 234445666558889999999999888877
Q ss_pred CCc--------------ccccHHHHHHHHHHcCCcEEEEEcCCC----ChHHHHHhhhh-----cceEEEEeecCCCCCC
Q 025927 147 EQS--------------STIHLHRTLNQIKDLGAKAGVVLNPAT----SLSAIECVLDV-----VDLVLIMSVNPGFGGQ 203 (246)
Q Consensus 147 E~~--------------~~~~~~~~i~~Ik~~G~k~GlAlnP~T----pve~l~~~l~~-----vD~VLvMsV~PGfgGQ 203 (246)
... ......+.++++|+.|+++.+.+...+ +.+.+.+++.. +|.|-+. ...|.
T Consensus 96 ~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~----Dt~G~ 171 (265)
T cd03174 96 SASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLK----DTVGL 171 (265)
T ss_pred ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEec----hhcCC
Confidence 642 123466788888999999988885444 44555554443 5655543 23555
Q ss_pred cccHHHHHHHHHHHHHHH
Q 025927 204 SFIESQVKKISDLRRMCL 221 (246)
Q Consensus 204 ~F~~~~l~KI~~lr~l~~ 221 (246)
..-+++.+-++.+++..+
T Consensus 172 ~~P~~v~~li~~l~~~~~ 189 (265)
T cd03174 172 ATPEEVAELVKALREALP 189 (265)
T ss_pred cCHHHHHHHHHHHHHhCC
Confidence 555555666666666654
No 91
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=94.88 E-value=0.66 Score=42.41 Aligned_cols=134 Identities=14% Similarity=0.186 Sum_probs=85.3
Q ss_pred HHhhccc---CCCCCeeEEEeccCcccchHH---HHhcC-CCEEEE-----ccCC----c--ccccHHHHHHHHHHc-CC
Q 025927 106 VVDALRP---VTDLPLDVHLMIVEPEQRVPD---FIKAG-ADIVSV-----HCEQ----S--STIHLHRTLNQIKDL-GA 166 (246)
Q Consensus 106 ~I~~ir~---~t~~plDvHLMV~~P~~~i~~---~~~ag-ad~It~-----H~E~----~--~~~~~~~~i~~Ik~~-G~ 166 (246)
+++.+++ ..+.|+-+-++-.+|+.|.+. +.++| +|.|-+ |... . ..+.+.++++.+|+. .+
T Consensus 79 ~~~~~~~~~~~~~~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~ 158 (301)
T PRK07259 79 FIEEELPWLEEFDTPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKV 158 (301)
T ss_pred HHHHHHHHHhccCCcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCC
Confidence 4555433 236789999999999988753 34578 999988 3331 0 012367888999987 67
Q ss_pred cEEEEEcCCC-ChHHHHHhhhh--cceEEEEeecC------------------CCCCCcccHHHHHHHHHHHHHHHhcCC
Q 025927 167 KAGVVLNPAT-SLSAIECVLDV--VDLVLIMSVNP------------------GFGGQSFIESQVKKISDLRRMCLEKGV 225 (246)
Q Consensus 167 k~GlAlnP~T-pve~l~~~l~~--vD~VLvMsV~P------------------GfgGQ~F~~~~l~KI~~lr~l~~~~~~ 225 (246)
.+++=++|+. .+..+...+.. +|.|.+..+-+ |+.|....|..++-++++++..
T Consensus 159 pv~vKl~~~~~~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~----- 233 (301)
T PRK07259 159 PVIVKLTPNVTDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAV----- 233 (301)
T ss_pred CEEEEcCCCchhHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhC-----
Confidence 7888788764 33334444443 78876643322 3445555666777777776643
Q ss_pred CCeEEEeCCC-Chhhhhhcc
Q 025927 226 NPWIEVDGGV-GPKNAYKVP 244 (246)
Q Consensus 226 ~~~I~VDGGI-~~e~i~~l~ 244 (246)
+..|-.-||| +.+.+.++.
T Consensus 234 ~ipvi~~GGI~~~~da~~~l 253 (301)
T PRK07259 234 DIPIIGMGGISSAEDAIEFI 253 (301)
T ss_pred CCCEEEECCCCCHHHHHHHH
Confidence 3568889999 566666543
No 92
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=94.84 E-value=0.65 Score=43.50 Aligned_cols=138 Identities=21% Similarity=0.195 Sum_probs=94.3
Q ss_pred CCCCCcEEeeeecccChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCC---CC----------HHHHhhcccCCCCCee
Q 025927 53 FSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNIT---IG----------PLVVDALRPVTDLPLD 119 (246)
Q Consensus 53 ~~~~~~~IsPSIl~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~t---fg----------p~~I~~ir~~t~~plD 119 (246)
++..+.-+...|...|...+.+-.+.+++.|+|.| |+-=|-=+++.. +| -++++++++.++.|+.
T Consensus 50 ~~~~e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~I--DlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVs 127 (318)
T TIGR00742 50 FSPEESPVALQLGGSDPNDLAKCAKIAEKRGYDEI--NLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVT 127 (318)
T ss_pred cCCCCCcEEEEEccCCHHHHHHHHHHHHhCCCCEE--EEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeE
Confidence 33445668899999999999999999999888865 444365544432 22 3456666777788988
Q ss_pred EEEec--cC------cccchHHHHhcCCCEEEEccCCc-----c-cc-------cHHHHHHHHHHcCCcEEEEEcCC-CC
Q 025927 120 VHLMI--VE------PEQRVPDFIKAGADIVSVHCEQS-----S-TI-------HLHRTLNQIKDLGAKAGVVLNPA-TS 177 (246)
Q Consensus 120 vHLMV--~~------P~~~i~~~~~agad~It~H~E~~-----~-~~-------~~~~~i~~Ik~~G~k~GlAlnP~-Tp 177 (246)
|=+=+ .+ ...+++.+.++|++.|++|.-+. + .. + .+.+.++++.-..+=|..|-+ ++
T Consensus 128 vKiR~g~~~~~~~~~~~~~~~~l~~~G~~~itvHgRt~~~qg~sg~~~~~~~~~~-~~~i~~vk~~~~~ipVi~NGdI~s 206 (318)
T TIGR00742 128 VKHRIGIDPLDSYEFLCDFVEIVSGKGCQNFIVHARKAWLSGLSPKENREIPPLR-YERVYQLKKDFPHLTIEINGGIKN 206 (318)
T ss_pred EEEecCCCCcchHHHHHHHHHHHHHcCCCEEEEeCCchhhcCCCccccccCCchh-HHHHHHHHHhCCCCcEEEECCcCC
Confidence 88855 22 12557777889999999998741 0 00 2 244666666432344555655 67
Q ss_pred hHHHHHhhhhcceEEE
Q 025927 178 LSAIECVLDVVDLVLI 193 (246)
Q Consensus 178 ve~l~~~l~~vD~VLv 193 (246)
.++++.++..+|.|++
T Consensus 207 ~~da~~~l~g~dgVMi 222 (318)
T TIGR00742 207 SEQIKQHLSHVDGVMV 222 (318)
T ss_pred HHHHHHHHhCCCEEEE
Confidence 7888888888998877
No 93
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=94.84 E-value=0.11 Score=46.00 Aligned_cols=168 Identities=16% Similarity=0.161 Sum_probs=96.4
Q ss_pred eeecccChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCE
Q 025927 62 PSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADI 141 (246)
Q Consensus 62 PSIl~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~ 141 (246)
+-....|+..+ .+.+++.|++++|+==.||.. ..-.-..+.|+.+.+.+..|+.+===+... .-++.+.++|++.
T Consensus 24 ~~~~~~dP~~~---a~~~~~~g~~~l~ivDLdaa~-~g~~~n~~~i~~i~~~~~~~i~vgGGIrs~-ed~~~ll~~Ga~~ 98 (229)
T PF00977_consen 24 ETVYSGDPVEV---AKAFNEQGADELHIVDLDAAK-EGRGSNLELIKEIAKETGIPIQVGGGIRSI-EDAERLLDAGADR 98 (229)
T ss_dssp EECECCCHHHH---HHHHHHTT-SEEEEEEHHHHC-CTHHHHHHHHHHHHHHSSSEEEEESSE-SH-HHHHHHHHTT-SE
T ss_pred eeEECcCHHHH---HHHHHHcCCCEEEEEEccCcc-cCchhHHHHHHHHHhcCCccEEEeCccCcH-HHHHHHHHhCCCE
Confidence 33455666665 455578899999973345543 111122367788877766554443334443 3466888999999
Q ss_pred EEEccCCcccccHHHHHHHHHHcCC---------cEE--EEEcCCC------ChHHHHHhhhh-cceEEEEeecCCCCCC
Q 025927 142 VSVHCEQSSTIHLHRTLNQIKDLGA---------KAG--VVLNPAT------SLSAIECVLDV-VDLVLIMSVNPGFGGQ 203 (246)
Q Consensus 142 It~H~E~~~~~~~~~~i~~Ik~~G~---------k~G--lAlnP~T------pve~l~~~l~~-vD~VLvMsV~PGfgGQ 203 (246)
+.+.-|+. .++.-+-+..++.|- +-| ++.+... +.+.++.+.+. +.-++++.|+---.+|
T Consensus 99 Vvigt~~~--~~~~~l~~~~~~~g~~~ivvslD~~~g~~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~ 176 (229)
T PF00977_consen 99 VVIGTEAL--EDPELLEELAERYGSQRIVVSLDARDGYKVATNGWQESSGIDLEEFAKRLEELGAGEIILTDIDRDGTMQ 176 (229)
T ss_dssp EEESHHHH--HCCHHHHHHHHHHGGGGEEEEEEEEETEEEEETTTTEEEEEEHHHHHHHHHHTT-SEEEEEETTTTTTSS
T ss_pred EEeChHHh--hchhHHHHHHHHcCcccEEEEEEeeeceEEEecCccccCCcCHHHHHHHHHhcCCcEEEEeeccccCCcC
Confidence 99998864 344434444455554 333 2222222 23444444333 7889999999877788
Q ss_pred cccHHHHHHHHHHHHHHHhcCCCCeEEEeCCC-Chhhhhhcc
Q 025927 204 SFIESQVKKISDLRRMCLEKGVNPWIEVDGGV-GPKNAYKVP 244 (246)
Q Consensus 204 ~F~~~~l~KI~~lr~l~~~~~~~~~I~VDGGI-~~e~i~~l~ 244 (246)
-++-+.++++++ .. +..+.+=||| +.+.+.++.
T Consensus 177 G~d~~~~~~l~~---~~-----~~~viasGGv~~~~Dl~~l~ 210 (229)
T PF00977_consen 177 GPDLELLKQLAE---AV-----NIPVIASGGVRSLEDLRELK 210 (229)
T ss_dssp S--HHHHHHHHH---HH-----SSEEEEESS--SHHHHHHHH
T ss_pred CCCHHHHHHHHH---Hc-----CCCEEEecCCCCHHHHHHHH
Confidence 887776655543 32 2468899999 557776654
No 94
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=94.82 E-value=0.53 Score=43.94 Aligned_cols=139 Identities=21% Similarity=0.200 Sum_probs=95.1
Q ss_pred CCcEEeeeecccChhhHHHHHHHHHHcCCCEEEeeeccCcccC---CCCCC----------HHHHhhcccCC--CCCeeE
Q 025927 56 SDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVP---NITIG----------PLVVDALRPVT--DLPLDV 120 (246)
Q Consensus 56 ~~~~IsPSIl~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVp---N~tfg----------p~~I~~ir~~t--~~plDv 120 (246)
.+.-+.++|+..|+..+.+..+.+++.|.| .+|+-=|.-+| .-+.| -++++++|+.+ ++|+.|
T Consensus 61 ~e~p~~vQl~g~~p~~~~~aA~~~~~~g~d--~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsv 138 (312)
T PRK10550 61 SGTLVRIQLLGQYPQWLAENAARAVELGSW--GVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTV 138 (312)
T ss_pred CCCcEEEEeccCCHHHHHHHHHHHHHcCCC--EEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEE
Confidence 345689999999999999999999999888 56776676543 22333 23455556655 488888
Q ss_pred EEec--cCcc---cchHHHHhcCCCEEEEccCCccc------ccHHHHHHHHHHcCCcEEEEEcCC-CChHHHHHhhhh-
Q 025927 121 HLMI--VEPE---QRVPDFIKAGADIVSVHCEQSST------IHLHRTLNQIKDLGAKAGVVLNPA-TSLSAIECVLDV- 187 (246)
Q Consensus 121 HLMV--~~P~---~~i~~~~~agad~It~H~E~~~~------~~~~~~i~~Ik~~G~k~GlAlnP~-Tpve~l~~~l~~- 187 (246)
-+=. .+++ .+.+.+.++|++.|++|..+... .++ ..+..+|+. .++=|..|-+ ++.++.+.++..
T Consensus 139 KiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~-~~i~~ik~~-~~iPVi~nGdI~t~~da~~~l~~~ 216 (312)
T PRK10550 139 KVRLGWDSGERKFEIADAVQQAGATELVVHGRTKEDGYRAEHINW-QAIGEIRQR-LTIPVIANGEIWDWQSAQQCMAIT 216 (312)
T ss_pred EEECCCCCchHHHHHHHHHHhcCCCEEEECCCCCccCCCCCcccH-HHHHHHHhh-cCCcEEEeCCcCCHHHHHHHHhcc
Confidence 8654 2323 44556677899999999874211 123 567788865 3455666666 677899998854
Q ss_pred -cceEEE---EeecC
Q 025927 188 -VDLVLI---MSVNP 198 (246)
Q Consensus 188 -vD~VLv---MsV~P 198 (246)
+|.|++ .--+|
T Consensus 217 g~DgVmiGRg~l~nP 231 (312)
T PRK10550 217 GCDAVMIGRGALNIP 231 (312)
T ss_pred CCCEEEEcHHhHhCc
Confidence 898887 44445
No 95
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=94.77 E-value=0.39 Score=42.77 Aligned_cols=166 Identities=17% Similarity=0.119 Sum_probs=106.0
Q ss_pred EeeeecccChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCC
Q 025927 60 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGA 139 (246)
Q Consensus 60 IsPSIl~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~aga 139 (246)
++++-.+-+.....+.++++.+.|++.+++=.-|... ..+ -...+.+++.+. ..++-|+|.+.. +.-.+.||
T Consensus 11 vt~~~~~~~~~~~~~~ve~al~~Gv~~vQlR~K~~~~-~~~---~~~a~~~~~lc~-~~~v~liINd~~---dlA~~~~A 82 (211)
T COG0352 11 VTDRPLIYDGVDLLEWVEAALKGGVTAVQLREKDLSD-EEY---LALAEKLRALCQ-KYGVPLIINDRV---DLALAVGA 82 (211)
T ss_pred EcCCccccccchhHHHHHHHHhCCCeEEEEecCCCCh-HHH---HHHHHHHHHHHH-HhCCeEEecCcH---HHHHhCCC
Confidence 4444444433331578888889999999997666433 111 334445554432 235667887754 34457899
Q ss_pred CEEEEccCCcccccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhhh-cceEEEEeecCCCCCCcccHHHHHHHHHHHH
Q 025927 140 DIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRR 218 (246)
Q Consensus 140 d~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~~-vD~VLvMsV~PGfgGQ~F~~~~l~KI~~lr~ 218 (246)
|.|++-.|. -+.....++...++.+|+..+ +.++++.-... +|||-+=.|-|=-.=+.--+.-++.++++++
T Consensus 83 dGVHlGq~D----~~~~~ar~~~~~~~iIG~S~h---~~eea~~A~~~g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~ 155 (211)
T COG0352 83 DGVHLGQDD----MPLAEARELLGPGLIIGLSTH---DLEEALEAEELGADYVGLGPIFPTSTKPDAPPLGLEGLREIRE 155 (211)
T ss_pred CEEEcCCcc----cchHHHHHhcCCCCEEEeecC---CHHHHHHHHhcCCCEEEECCcCCCCCCCCCCccCHHHHHHHHH
Confidence 988777662 233455666677788898887 77777776655 9999987776632212224555666666666
Q ss_pred HHHhcCCCCeEEEeCCCChhhhhhccc
Q 025927 219 MCLEKGVNPWIEVDGGVGPKNAYKVPN 245 (246)
Q Consensus 219 l~~~~~~~~~I~VDGGI~~e~i~~l~~ 245 (246)
... .-+.+=||||.+|++++++
T Consensus 156 ~~~-----iP~vAIGGi~~~nv~~v~~ 177 (211)
T COG0352 156 LVN-----IPVVAIGGINLENVPEVLE 177 (211)
T ss_pred hCC-----CCEEEEcCCCHHHHHHHHH
Confidence 532 2366679999999998865
No 96
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=94.71 E-value=0.7 Score=41.02 Aligned_cols=156 Identities=16% Similarity=0.173 Sum_probs=101.4
Q ss_pred cEEeeeecccChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhccc-CCCCCeeEEEeccCcccchHHHHh
Q 025927 58 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRP-VTDLPLDVHLMIVEPEQRVPDFIK 136 (246)
Q Consensus 58 ~~IsPSIl~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~-~t~~plDvHLMV~~P~~~i~~~~~ 136 (246)
..+-|=+-..|..+..+-++.+.+.|++.+=+= | +..-+.+.|+.+|+ +.+..+=+.- |.++ ..++...+
T Consensus 15 ~~~iaV~r~~~~~~a~~i~~al~~~Gi~~iEit-----l--~~~~~~~~I~~l~~~~p~~~IGAGT-Vl~~-~~a~~a~~ 85 (212)
T PRK05718 15 GPVVPVIVINKLEDAVPLAKALVAGGLPVLEVT-----L--RTPAALEAIRLIAKEVPEALIGAGT-VLNP-EQLAQAIE 85 (212)
T ss_pred CCEEEEEEcCCHHHHHHHHHHHHHcCCCEEEEe-----c--CCccHHHHHHHHHHHCCCCEEEEee-ccCH-HHHHHHHH
Confidence 345666777888888899999999999988775 2 33346778888876 3333333332 3344 44778899
Q ss_pred cCCCEEEEccCCcccccHHHHHHHHHHcCCcEEEEEcCC--CChHHHHHhhh-hcceEEEEeecCCCCCCcccHHHHHHH
Q 025927 137 AGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPA--TSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKI 213 (246)
Q Consensus 137 agad~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~--Tpve~l~~~l~-~vD~VLvMsV~PGfgGQ~F~~~~l~KI 213 (246)
+||+++....= +. .+++..++ .|+.+-|+ ||-| +...++ -+|.|=+ -| .+.+. -.+-+
T Consensus 86 aGA~FivsP~~-----~~-~vi~~a~~----~~i~~iPG~~TptE-i~~a~~~Ga~~vKl---FP---a~~~g--g~~~l 146 (212)
T PRK05718 86 AGAQFIVSPGL-----TP-PLLKAAQE----GPIPLIPGVSTPSE-LMLGMELGLRTFKF---FP---AEASG--GVKML 146 (212)
T ss_pred cCCCEEECCCC-----CH-HHHHHHHH----cCCCEeCCCCCHHH-HHHHHHCCCCEEEE---cc---chhcc--CHHHH
Confidence 99998886632 22 67888876 55666666 6666 444433 4777666 23 33331 12234
Q ss_pred HHHHHHHHhcCCCCeEEEeCCCChhhhhhccc
Q 025927 214 SDLRRMCLEKGVNPWIEVDGGVGPKNAYKVPN 245 (246)
Q Consensus 214 ~~lr~l~~~~~~~~~I~VDGGI~~e~i~~l~~ 245 (246)
+.++.-++ +..+.+=|||+.+|+++..+
T Consensus 147 k~l~~p~p----~~~~~ptGGV~~~ni~~~l~ 174 (212)
T PRK05718 147 KALAGPFP----DVRFCPTGGISPANYRDYLA 174 (212)
T ss_pred HHHhccCC----CCeEEEeCCCCHHHHHHHHh
Confidence 55555543 36788999999999988654
No 97
>PRK08508 biotin synthase; Provisional
Probab=94.62 E-value=1.8 Score=39.56 Aligned_cols=161 Identities=16% Similarity=0.167 Sum_probs=97.4
Q ss_pred cChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCC--CHHHHhhcccCCCCCeeEEEeccC---cccchHHHHhcCCCE
Q 025927 67 ANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITI--GPLVVDALRPVTDLPLDVHLMIVE---PEQRVPDFIKAGADI 141 (246)
Q Consensus 67 aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tf--gp~~I~~ir~~t~~plDvHLMV~~---P~~~i~~~~~agad~ 141 (246)
.++.++.++++...+.|+..+|+ +-.|...+...+ =-++++.||+.. .++|+.+.. ....++.|.++|+|.
T Consensus 40 ~s~eeI~~~a~~a~~~g~~~~~l-v~sg~~~~~~~~e~~~ei~~~ik~~~---p~l~i~~s~G~~~~e~l~~Lk~aGld~ 115 (279)
T PRK08508 40 KDIEQIVQEAKMAKANGALGFCL-VTSGRGLDDKKLEYVAEAAKAVKKEV---PGLHLIACNGTASVEQLKELKKAGIFS 115 (279)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEE-EeccCCCCcccHHHHHHHHHHHHhhC---CCcEEEecCCCCCHHHHHHHHHcCCCE
Confidence 46678888888888889999999 656654443222 124445555432 144443221 235677889999999
Q ss_pred EEEccCCc--------cccc---HHHHHHHHHHcCCcE--EEEEcCCCChHHHHHhhhh-----cceEEEEeecC--CC-
Q 025927 142 VSVHCEQS--------STIH---LHRTLNQIKDLGAKA--GVVLNPATSLSAIECVLDV-----VDLVLIMSVNP--GF- 200 (246)
Q Consensus 142 It~H~E~~--------~~~~---~~~~i~~Ik~~G~k~--GlAlnP~Tpve~l~~~l~~-----vD~VLvMsV~P--Gf- 200 (246)
+..-.|+. +... ..++++.+|+.|+++ |+.+..+-..+++.+.+.. .|.|-+--..| |.
T Consensus 116 ~~~~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg~I~GlGEt~ed~~~~l~~lr~L~~~svpl~~~~p~~~t~ 195 (279)
T PRK08508 116 YNHNLETSKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIFGLGESWEDRISFLKSLASLSPHSTPINFFIPNPALP 195 (279)
T ss_pred EcccccchHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecceeEEecCCCHHHHHHHHHHHHcCCCCEEeeCCcCCCCCCC
Confidence 99766653 1122 334777789999776 7777777777666665432 45555544444 32
Q ss_pred -CCCcccH-HHHHHHHHHHHHHHhcCCCCeEEEeCCC
Q 025927 201 -GGQSFIE-SQVKKISDLRRMCLEKGVNPWIEVDGGV 235 (246)
Q Consensus 201 -gGQ~F~~-~~l~KI~~lr~l~~~~~~~~~I~VDGGI 235 (246)
..++..+ +.++-|.-+|-+++. ..|.+=||-
T Consensus 196 ~~~~~~~~~~~lr~iAv~Rl~lp~----~~i~~~~gr 228 (279)
T PRK08508 196 LKAPTLSADEALEIVRLAKEALPN----ARLMVAGGR 228 (279)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCC----ceeeecCCh
Confidence 1222233 455555555666553 468888884
No 98
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=94.61 E-value=1.5 Score=40.36 Aligned_cols=154 Identities=18% Similarity=0.093 Sum_probs=99.9
Q ss_pred HHHHHHHHHHcCCCEEEe-eeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEEEccCCcc
Q 025927 72 LGEQVKAVELAGCDWIHV-DVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS 150 (246)
Q Consensus 72 l~~~i~~l~~~g~d~lHi-DIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It~H~E~~~ 150 (246)
..+..+..++.|++|+|+ |. ||---.| .+.|++|++ ++.|+.+===+. . ..++.+.++||++|.+=-=+
T Consensus 45 P~~~A~~~~~~Ga~~lHvVDL-dgg~~~n----~~~i~~i~~-~~~~vqvGGGIR-~-e~i~~~l~~Ga~rViigT~A-- 114 (262)
T PLN02446 45 AAEFAEMYKRDGLTGGHVIML-GADDASL----AAALEALRA-YPGGLQVGGGVN-S-ENAMSYLDAGASHVIVTSYV-- 114 (262)
T ss_pred HHHHHHHHHHCCCCEEEEEEC-CCCCccc----HHHHHHHHh-CCCCEEEeCCcc-H-HHHHHHHHcCCCEEEEchHH--
Confidence 345567778899999996 77 9822222 678999988 677777655554 4 77899999999999985332
Q ss_pred ccc----HHHHHHHHHHcC---CcEEEEEc--CC------------CC---hHHHHHhhh-hcceEEEEeecCCCCCCcc
Q 025927 151 TIH----LHRTLNQIKDLG---AKAGVVLN--PA------------TS---LSAIECVLD-VVDLVLIMSVNPGFGGQSF 205 (246)
Q Consensus 151 ~~~----~~~~i~~Ik~~G---~k~GlAln--P~------------Tp---ve~l~~~l~-~vD~VLvMsV~PGfgGQ~F 205 (246)
..+ |.-+-+.+++.| +-++|-.+ .+ |. ++.+..+.+ .++-+++-.|+-.-..+-+
T Consensus 115 v~~~~~~p~~v~~~~~~~G~~~IvvsiD~k~~~g~~~Va~~GW~~~t~~~~~e~~~~~~~~g~~eii~TdI~rDGtl~G~ 194 (262)
T PLN02446 115 FRDGQIDLERLKDLVRLVGKQRLVLDLSCRKKDGRYYVVTDRWQKFSDLAVDEETLEFLAAYCDEFLVHGVDVEGKRLGI 194 (262)
T ss_pred HhCCCCCHHHHHHHHHHhCCCCEEEEEEEEecCCCEEEEECCCcccCCCCHHHHHHHHHHhCCCEEEEEEEcCCCcccCC
Confidence 234 665666667775 22233322 22 22 333345443 3889999999886667777
Q ss_pred cHHHHHHHHHHHHHHHhcCCCCeEEEeCCCC-hhhhhhc
Q 025927 206 IESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKV 243 (246)
Q Consensus 206 ~~~~l~KI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~l 243 (246)
+-+.++++.+. .+..+.+=||++ .+.+.++
T Consensus 195 d~el~~~l~~~--------~~ipVIASGGv~sleDi~~L 225 (262)
T PLN02446 195 DEELVALLGEH--------SPIPVTYAGGVRSLDDLERV 225 (262)
T ss_pred CHHHHHHHHhh--------CCCCEEEECCCCCHHHHHHH
Confidence 77777666542 134677889985 3344443
No 99
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=94.58 E-value=2.5 Score=38.49 Aligned_cols=153 Identities=17% Similarity=0.177 Sum_probs=104.0
Q ss_pred HHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEEEccCCcccc
Q 025927 73 GEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTI 152 (246)
Q Consensus 73 ~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It~H~E~~~~~ 152 (246)
.+..+...+.|++|||+==-||-|.+ -.=..+.++.|.+.++.|+.+===+ +-.+.++.+.++|++++++=-=+ ..
T Consensus 34 ~~~a~~~~~~Ga~~lHlVDLdgA~~g-~~~n~~~i~~i~~~~~~~vQvGGGI-Rs~~~v~~ll~~G~~rViiGt~a--v~ 109 (241)
T COG0106 34 LEVAKKWSDQGAEWLHLVDLDGAKAG-GPRNLEAIKEILEATDVPVQVGGGI-RSLEDVEALLDAGVARVIIGTAA--VK 109 (241)
T ss_pred HHHHHHHHHcCCcEEEEeeccccccC-CcccHHHHHHHHHhCCCCEEeeCCc-CCHHHHHHHHHCCCCEEEEecce--ec
Confidence 35567778899999998778999963 3445567777777665554443333 45677899999999999986543 57
Q ss_pred cHHHHHHHHHHcCCcEEEEEcCC---------------CChHHHHHhhhh-cceEEEEeecCCCCCCcccHHHHHHHHHH
Q 025927 153 HLHRTLNQIKDLGAKAGVVLNPA---------------TSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDL 216 (246)
Q Consensus 153 ~~~~~i~~Ik~~G~k~GlAlnP~---------------Tpve~l~~~l~~-vD~VLvMsV~PGfgGQ~F~~~~l~KI~~l 216 (246)
+|..+.+.+++.|-++-++|.-. ++.+..+.|.+. +..+++--+.---.-+-.+.+.+.++.+
T Consensus 110 ~p~~v~~~~~~~g~rivv~lD~r~g~vav~GW~e~s~~~~~~l~~~~~~~g~~~ii~TdI~~DGtl~G~n~~l~~~l~~- 188 (241)
T COG0106 110 NPDLVKELCEEYGDRIVVALDARDGKVAVSGWQEDSGVELEELAKRLEEVGLAHILYTDISRDGTLSGPNVDLVKELAE- 188 (241)
T ss_pred CHHHHHHHHHHcCCcEEEEEEccCCccccccccccccCCHHHHHHHHHhcCCCeEEEEecccccccCCCCHHHHHHHHH-
Confidence 89999999999998888877643 334555556555 6677776666543344445555554443
Q ss_pred HHHHHhcCCCCeEEEeCCCCh
Q 025927 217 RRMCLEKGVNPWIEVDGGVGP 237 (246)
Q Consensus 217 r~l~~~~~~~~~I~VDGGI~~ 237 (246)
.. +..+..=|||+.
T Consensus 189 --~~-----~ipviaSGGv~s 202 (241)
T COG0106 189 --AV-----DIPVIASGGVSS 202 (241)
T ss_pred --Hh-----CcCEEEecCcCC
Confidence 22 345777888863
No 100
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=94.56 E-value=0.67 Score=42.58 Aligned_cols=147 Identities=22% Similarity=0.293 Sum_probs=83.6
Q ss_pred CcEEeeeeccc-ChhhHHHHHHHHHHcCCCEEEeeeccCcccCCC----C------CCHHH----HhhcccCCCCCeeEE
Q 025927 57 DIIVSPSILSA-NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNI----T------IGPLV----VDALRPVTDLPLDVH 121 (246)
Q Consensus 57 ~~~IsPSIl~a-D~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~----t------fgp~~----I~~ir~~t~~plDvH 121 (246)
+..+..|+.+. +...+.+.++.+++.|+|++=+.+- +||. . -.|+. ++++|+.+++|+-|=
T Consensus 99 ~~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~s----CP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~vK 174 (299)
T cd02940 99 DKILIASIMCEYNKEDWTELAKLVEEAGADALELNFS----CPHGMPERGMGAAVGQDPELVEEICRWVREAVKIPVIAK 174 (299)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECC----CCCCCCCCCCchhhccCHHHHHHHHHHHHHhcCCCeEEE
Confidence 35678999998 9999999999999889998888765 5553 1 12333 444455556665554
Q ss_pred EeccCcccchHHHHhcCCCEEEEccCCcccccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhhhcceEE-E--EeecC
Q 025927 122 LMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVL-I--MSVNP 198 (246)
Q Consensus 122 LMV~~P~~~i~~~~~agad~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~~vD~VL-v--MsV~P 198 (246)
|= |. ..++.++.+.+.+.|+..=+++|.-.....+. ++.--.++ + =+..=
T Consensus 175 l~---~~----------------------~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id--~~~~~~~~~~~~~~~~g 227 (299)
T cd02940 175 LT---PN----------------------ITDIREIARAAKEGGADGVSAINTVNSLMGVD--LDGTPPAPGVEGKTTYG 227 (299)
T ss_pred CC---CC----------------------chhHHHHHHHHHHcCCCEEEEecccccccccc--cccCCccccccCCCCcC
Confidence 31 11 01222334444444443333333111100000 00000000 0 01223
Q ss_pred CCCCCcccHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCh
Q 025927 199 GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP 237 (246)
Q Consensus 199 GfgGQ~F~~~~l~KI~~lr~l~~~~~~~~~I~VDGGI~~ 237 (246)
|++|....|-+++.|+++++..+ .++.|...|||..
T Consensus 228 g~sG~a~~p~~l~~v~~~~~~~~---~~ipIig~GGI~~ 263 (299)
T cd02940 228 GYSGPAVKPIALRAVSQIARAPE---PGLPISGIGGIES 263 (299)
T ss_pred cccCCCcchHHHHHHHHHHHhcC---CCCcEEEECCCCC
Confidence 78999999999999999988763 1367889999964
No 101
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=94.50 E-value=0.64 Score=44.20 Aligned_cols=160 Identities=13% Similarity=0.142 Sum_probs=94.7
Q ss_pred ccChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCC--CHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEE
Q 025927 66 SANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITI--GPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVS 143 (246)
Q Consensus 66 ~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tf--gp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It 143 (246)
-.+...+.++++.+.+.|++.+|+ +. |.-..+..+ =-+.++.|++... .+.+|...-.. ..++.|.++|++.++
T Consensus 103 ~ls~eEI~~~a~~~~~~Gv~~i~l-vg-Ge~p~~~~~e~l~~~i~~Ik~~~p-~i~i~~g~lt~-e~l~~Lk~aGv~r~~ 178 (371)
T PRK09240 103 TLDEEEIEREMAAIKKLGFEHILL-LT-GEHEAKVGVDYIRRALPIAREYFS-SVSIEVQPLSE-EEYAELVELGLDGVT 178 (371)
T ss_pred cCCHHHHHHHHHHHHhCCCCEEEE-ee-CCCCCCCCHHHHHHHHHHHHHhCC-CceeccCCCCH-HHHHHHHHcCCCEEE
Confidence 346678888888898999999988 33 553222221 1234445544211 12334333333 345789999999999
Q ss_pred EccCCcc------------c---ccHHHHHHHHHHcCCc---EEEEEcCCCChHHHHHhhh---h-----------cceE
Q 025927 144 VHCEQSS------------T---IHLHRTLNQIKDLGAK---AGVVLNPATSLSAIECVLD---V-----------VDLV 191 (246)
Q Consensus 144 ~H~E~~~------------~---~~~~~~i~~Ik~~G~k---~GlAlnP~Tpve~l~~~l~---~-----------vD~V 191 (246)
+-.|+.. . ++..+.++.++++|++ +|+.+.-+-..++..+++. . |-+.
T Consensus 179 i~lET~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~g~i~Glge~~~d~~~~a~~l~~L~~~~~~~~~sv~~~ 258 (371)
T PRK09240 179 VYQETYNPATYAKHHLRGPKRDFEYRLETPERAGRAGIRKIGLGALLGLSDWRTDALMTALHLRYLQRKYWQAEYSISFP 258 (371)
T ss_pred EEEecCCHHHHHHhCcCCCCCCHHHHHHHHHHHHHcCCCeeceEEEecCCccHHHHHHHHHHHHHHHHhCCCCceeeecC
Confidence 9999741 1 1234577788899986 5666666655554544432 1 2223
Q ss_pred EEEeecCC-CCCCc-ccH-HHHHHHHHHHHHHHhcCCCCeEEEeCC
Q 025927 192 LIMSVNPG-FGGQS-FIE-SQVKKISDLRRMCLEKGVNPWIEVDGG 234 (246)
Q Consensus 192 LvMsV~PG-fgGQ~-F~~-~~l~KI~~lr~l~~~~~~~~~I~VDGG 234 (246)
-+|.+ || +.+++ ..+ +.++-|..+|-+++.. .|.+=||
T Consensus 259 ~l~P~-~g~~~~~~~~~~~e~l~~ia~~Rl~lP~~----~i~~s~g 299 (371)
T PRK09240 259 RLRPC-TGGIEPASIVSDKQLVQLICAFRLFLPDV----EISLSTR 299 (371)
T ss_pred ccccC-CCCCCCCCCCCHHHHHHHHHHHHHHCccc----ccEEecC
Confidence 45555 55 54444 223 5666677777777653 5777777
No 102
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=94.46 E-value=0.79 Score=42.75 Aligned_cols=146 Identities=22% Similarity=0.261 Sum_probs=91.8
Q ss_pred cccCCCCC---CH-HHHhhcccC--CCCCeeEEEeccC-------cccchHHHHhcC--CCEEEEccCC-----c----c
Q 025927 95 RFVPNITI---GP-LVVDALRPV--TDLPLDVHLMIVE-------PEQRVPDFIKAG--ADIVSVHCEQ-----S----S 150 (246)
Q Consensus 95 ~FVpN~tf---gp-~~I~~ir~~--t~~plDvHLMV~~-------P~~~i~~~~~ag--ad~It~H~E~-----~----~ 150 (246)
-|.+.+++ |. .+++.+++. .+.|+-+-+.-.+ ++.|.+...+++ +|+|-+-+=. . .
T Consensus 102 ~~~n~~g~~n~g~~~~~~~l~~~~~~~~plivsi~g~~~~~~~~~~~d~~~~~~~~~~~ad~ielN~scP~~~g~~~~~~ 181 (327)
T cd04738 102 ALINRMGFNNDGADAVAKRLKKRRPRGGPLGVNIGKNKDTPLEDAVEDYVIGVRKLGPYADYLVVNVSSPNTPGLRDLQG 181 (327)
T ss_pred ceeecCCCCCccHHHHHHHHHHhccCCCeEEEEEeCCCCCcccccHHHHHHHHHHHHhhCCEEEEECCCCCCCccccccC
Confidence 34444555 22 345666543 3678888887665 355665444444 8888774310 0 0
Q ss_pred cccHHHHHHHHHHc-C-----CcEEEEEcCCCChHHHHHhhh-----hcceEEEEeecC---------------CCCCCc
Q 025927 151 TIHLHRTLNQIKDL-G-----AKAGVVLNPATSLSAIECVLD-----VVDLVLIMSVNP---------------GFGGQS 204 (246)
Q Consensus 151 ~~~~~~~i~~Ik~~-G-----~k~GlAlnP~Tpve~l~~~l~-----~vD~VLvMsV~P---------------GfgGQ~ 204 (246)
.+.+.++++.+|+. + +.+.+=|.|+.+.+.+..+.. -+|.|.+...-+ |++|..
T Consensus 182 ~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~ 261 (327)
T cd04738 182 KEALRELLTAVKEERNKLGKKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAP 261 (327)
T ss_pred HHHHHHHHHHHHHHHhhcccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChh
Confidence 12356777777764 2 678888888876555555433 278888765321 678888
Q ss_pred ccHHHHHHHHHHHHHHHhcCCCCeEEEeCCC-Chhhhhhc
Q 025927 205 FIESQVKKISDLRRMCLEKGVNPWIEVDGGV-GPKNAYKV 243 (246)
Q Consensus 205 F~~~~l~KI~~lr~l~~~~~~~~~I~VDGGI-~~e~i~~l 243 (246)
..+.+++-++++++... .++.|-.-||| +.+.+.++
T Consensus 262 ~~~~~l~~v~~l~~~~~---~~ipIi~~GGI~t~~da~e~ 298 (327)
T cd04738 262 LKERSTEVLRELYKLTG---GKIPIIGVGGISSGEDAYEK 298 (327)
T ss_pred hhHHHHHHHHHHHHHhC---CCCcEEEECCCCCHHHHHHH
Confidence 88888999988888753 23568889999 55555443
No 103
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=94.36 E-value=0.23 Score=45.30 Aligned_cols=154 Identities=14% Similarity=0.118 Sum_probs=106.4
Q ss_pred hHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEEEccCCcc
Q 025927 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS 150 (246)
Q Consensus 71 ~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It~H~E~~~ 150 (246)
+..+..+.++++|+..|=+. .|++| |..+.+.++.+|+.+++|+-.+=-+-+|.+..+... +|||.|.+++....
T Consensus 62 d~~~~A~~y~~~GA~aISVl-Te~~~---F~Gs~~~l~~v~~~v~~PvL~KDFIid~~QI~ea~~-~GADavLLI~~~L~ 136 (247)
T PRK13957 62 HPVQIAKTYETLGASAISVL-TDQSY---FGGSLEDLKSVSSELKIPVLRKDFILDEIQIREARA-FGASAILLIVRILT 136 (247)
T ss_pred CHHHHHHHHHHCCCcEEEEE-cCCCc---CCCCHHHHHHHHHhcCCCEEeccccCCHHHHHHHHH-cCCCEEEeEHhhCC
Confidence 45566778899999999775 56766 677889999999988899888877888888777665 89999999998754
Q ss_pred cccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhh-hcceEEEEeecCC-CCCCcccHHHHHHHHHHHHHHHhcCCCCe
Q 025927 151 TIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPG-FGGQSFIESQVKKISDLRRMCLEKGVNPW 228 (246)
Q Consensus 151 ~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~-~vD~VLvMsV~PG-fgGQ~F~~~~l~KI~~lr~l~~~~~~~~~ 228 (246)
...+.++++..++.|+.+=|=+.-. ++++..++ ..+. ..||.- ...=.-...+. .+|..++++ +..
T Consensus 137 ~~~l~~l~~~a~~lGle~LVEVh~~---~El~~a~~~ga~i---iGINnRdL~t~~vd~~~~---~~L~~~ip~---~~~ 204 (247)
T PRK13957 137 PSQIKSFLKHASSLGMDVLVEVHTE---DEAKLALDCGAEI---IGINTRDLDTFQIHQNLV---EEVAAFLPP---NIV 204 (247)
T ss_pred HHHHHHHHHHHHHcCCceEEEECCH---HHHHHHHhCCCCE---EEEeCCCCccceECHHHH---HHHHhhCCC---CcE
Confidence 4568899999999999998877643 44444433 4444 334431 22222333333 455666653 234
Q ss_pred EEEeCCCCh-hhhh
Q 025927 229 IEVDGGVGP-KNAY 241 (246)
Q Consensus 229 I~VDGGI~~-e~i~ 241 (246)
.-.-+||+. +.+.
T Consensus 205 ~IsESGI~t~~d~~ 218 (247)
T PRK13957 205 KVGESGIESRSDLD 218 (247)
T ss_pred EEEcCCCCCHHHHH
Confidence 445788864 3343
No 104
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=94.35 E-value=1 Score=43.01 Aligned_cols=157 Identities=15% Similarity=0.197 Sum_probs=93.0
Q ss_pred ecccChhhHHHHHHHHHHcCCCEEEe-eeccCcccCCC---CCCHHHHhhcccCCCCCeeEEEeccCccc----chHHHH
Q 025927 64 ILSANFAKLGEQVKAVELAGCDWIHV-DVMDGRFVPNI---TIGPLVVDALRPVTDLPLDVHLMIVEPEQ----RVPDFI 135 (246)
Q Consensus 64 Il~aD~~~l~~~i~~l~~~g~d~lHi-DIMDG~FVpN~---tfgp~~I~~ir~~t~~plDvHLMV~~P~~----~i~~~~ 135 (246)
.-+-++.++-+|++.+.+.|++.+.+ |.-.+.|.+.+ .-=.+.++.|++..+. .-+++...+|.. .++.+.
T Consensus 164 ~r~r~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~~d~~~~~~l~~Ll~~l~~~~~~-~~ir~~~~~p~~~~~ell~~m~ 242 (414)
T TIGR01579 164 SRSVPMEAILKQVKILVAKGYKEIVLTGVNLGSYGDDLKNGTSLAKLLEQILQIPGI-KRIRLSSIDPEDIDEELLEAIA 242 (414)
T ss_pred CccCCHHHHHHHHHHHHHCCCceEEEeeEccchhccCCCCCCcHHHHHHHHhcCCCC-cEEEEeCCChhhCCHHHHHHHH
Confidence 44567888999999999999988775 33233343322 1123566666654333 246777667775 566666
Q ss_pred hcC--CCEEEEccCCcc------------cccHHHHHHHHHH--cCCcEEEEEc---CCCChHHHHHhhhh-----cceE
Q 025927 136 KAG--ADIVSVHCEQSS------------TIHLHRTLNQIKD--LGAKAGVVLN---PATSLSAIECVLDV-----VDLV 191 (246)
Q Consensus 136 ~ag--ad~It~H~E~~~------------~~~~~~~i~~Ik~--~G~k~GlAln---P~Tpve~l~~~l~~-----vD~V 191 (246)
++| +..+.+-+|+.+ .++..+.++.+|+ .|+.++.-+- |+-..+.++..++. +|.+
T Consensus 243 ~~~~~~~~l~lglESgs~~vLk~m~R~~~~~~~~~~v~~l~~~~~gi~i~~~~IvG~PgET~ed~~~tl~~i~~~~~~~~ 322 (414)
T TIGR01579 243 SEKRLCPHLHLSLQSGSDRVLKRMRRKYTRDDFLKLVNKLRSVRPDYAFGTDIIVGFPGESEEDFQETLRMVKEIEFSHL 322 (414)
T ss_pred hcCccCCCeEECCCcCChHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeeeeeEEEECCCCCHHHHHHHHHHHHhCCCCEE
Confidence 666 678888889742 1246678888888 7776653333 56566666554442 5665
Q ss_pred EE--EeecCCC-----CCCcccHHHHHHHHHHHHHHH
Q 025927 192 LI--MSVNPGF-----GGQSFIESQVKKISDLRRMCL 221 (246)
Q Consensus 192 Lv--MsV~PGf-----gGQ~F~~~~l~KI~~lr~l~~ 221 (246)
.+ ++..||- .+|-=-+..-+|.++|+++..
T Consensus 323 ~~~~~sp~pGT~~~~~~~~v~~~~~~~r~~~l~~~~~ 359 (414)
T TIGR01579 323 HIFPYSARPGTPASTMKDKVPETIKKERVKRLKELAE 359 (414)
T ss_pred EeeecCCCCCCchhhCCCCCCHHHHHHHHHHHHHHHH
Confidence 55 4556673 222222344455555554443
No 105
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=94.31 E-value=1.8 Score=39.92 Aligned_cols=115 Identities=17% Similarity=0.197 Sum_probs=69.4
Q ss_pred cChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccC---cccchHHHHhcCCCEEE
Q 025927 67 ANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVE---PEQRVPDFIKAGADIVS 143 (246)
Q Consensus 67 aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~---P~~~i~~~~~agad~It 143 (246)
.++..+.+.++.+.+.|+..+. ++.|.-.-+--+ .++++.+++..+ ..++.+ +.| ..++++.+.++|.+.|.
T Consensus 49 ls~eei~~~i~~~~~~gi~~I~--~tGGEPll~~~l-~~li~~i~~~~~-~~~i~i-tTNG~ll~~~~~~L~~agl~~i~ 123 (331)
T PRK00164 49 LSLEEIERLVRAFVALGVRKVR--LTGGEPLLRKDL-EDIIAALAALPG-IRDLAL-TTNGYLLARRAAALKDAGLDRVN 123 (331)
T ss_pred CCHHHHHHHHHHHHHCCCCEEE--EECCCCcCccCH-HHHHHHHHhcCC-CceEEE-EcCchhHHHHHHHHHHcCCCEEE
Confidence 4556777788888888887655 588874333222 244555554322 235554 334 23567888899999998
Q ss_pred EccCCcc------------cccHHHHHHHHHHcCC-c--EEEEEcCCCChHHHHHhhh
Q 025927 144 VHCEQSS------------TIHLHRTLNQIKDLGA-K--AGVVLNPATSLSAIECVLD 186 (246)
Q Consensus 144 ~H~E~~~------------~~~~~~~i~~Ik~~G~-k--~GlAlnP~Tpve~l~~~l~ 186 (246)
+.+++.. .+.+.+.++.+++.|. . +..++-|+...+++.++++
T Consensus 124 ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~ 181 (331)
T PRK00164 124 VSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLE 181 (331)
T ss_pred EEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHH
Confidence 8887531 1123455666677776 4 4456667766666665544
No 106
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=94.30 E-value=0.72 Score=43.05 Aligned_cols=131 Identities=15% Similarity=0.204 Sum_probs=87.0
Q ss_pred CcEEeeeecccChhhHHHHHHHHHHcCCCEEEeeeccCcccCC---------------CCCCHHHHhhcccCCCCCeeEE
Q 025927 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPN---------------ITIGPLVVDALRPVTDLPLDVH 121 (246)
Q Consensus 57 ~~~IsPSIl~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN---------------~tfgp~~I~~ir~~t~~plDvH 121 (246)
+..++++++..|+..+.+..+.+++.|+|.+ |+-=| +|+ -.+--++++++++.+++|+.+-
T Consensus 64 ~~~~~vQl~g~~~~~~~~aa~~~~~~g~d~I--dlN~g--CP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vK 139 (321)
T PRK10415 64 PGIRTVQIAGSDPKEMADAARINVESGAQII--DINMG--CPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLK 139 (321)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHHCCCCEE--EEeCC--CCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEE
Confidence 4557799999999999999988888888754 44333 343 1122234555566678888876
Q ss_pred Eec---c---CcccchHHHHhcCCCEEEEccCCcc-----cccHHHHHHHHHHcCCcEEEEEcCC-CChHHHHHhhh--h
Q 025927 122 LMI---V---EPEQRVPDFIKAGADIVSVHCEQSS-----TIHLHRTLNQIKDLGAKAGVVLNPA-TSLSAIECVLD--V 187 (246)
Q Consensus 122 LMV---~---~P~~~i~~~~~agad~It~H~E~~~-----~~~~~~~i~~Ik~~G~k~GlAlnP~-Tpve~l~~~l~--~ 187 (246)
+=. . +...+++.+.++|++.|++|..+.. ..+ .+.+..+++. .++=|..|-+ ++.+..+.+++ .
T Consensus 140 iR~G~~~~~~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~a~-~~~i~~ik~~-~~iPVI~nGgI~s~~da~~~l~~~g 217 (321)
T PRK10415 140 IRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRTRACLFNGEAE-YDSIRAVKQK-VSIPVIANGDITDPLKARAVLDYTG 217 (321)
T ss_pred EEccccCCcchHHHHHHHHHHhCCCEEEEecCccccccCCCcC-hHHHHHHHHh-cCCcEEEeCCCCCHHHHHHHHhccC
Confidence 622 1 2335666778899999999976421 122 3577777764 3444555655 68888888886 4
Q ss_pred cceEEE
Q 025927 188 VDLVLI 193 (246)
Q Consensus 188 vD~VLv 193 (246)
+|.|++
T Consensus 218 adgVmi 223 (321)
T PRK10415 218 ADALMI 223 (321)
T ss_pred CCEEEE
Confidence 888776
No 107
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=94.22 E-value=3.1 Score=38.20 Aligned_cols=163 Identities=17% Similarity=0.221 Sum_probs=105.4
Q ss_pred hHHHHHHHHHHcCCCEEEeee-ccCcccCCCCCCHHHHhhc-------ccCCCCCeeEEEeccCcccchHHHHhcCCCEE
Q 025927 71 KLGEQVKAVELAGCDWIHVDV-MDGRFVPNITIGPLVVDAL-------RPVTDLPLDVHLMIVEPEQRVPDFIKAGADIV 142 (246)
Q Consensus 71 ~l~~~i~~l~~~g~d~lHiDI-MDG~FVpN~tfgp~~I~~i-------r~~t~~plDvHLMV~~P~~~i~~~~~agad~I 142 (246)
+-.++++.|++.|+|.+=+-= .|.-|.+ ..+|+++.++ |+..++|+=|.++-.+|..-+..-..+|++.|
T Consensus 29 ~A~~ea~~l~~~GvD~viveN~~d~P~~~--~~~p~tva~m~~i~~~v~~~~~~p~GvnvL~nd~~aal~iA~a~ga~FI 106 (257)
T TIGR00259 29 KAWKDAMALEEGGVDAVMFENFFDAPFLK--EVDPETVAAMAVIAGQLKSDVSIPLGINVLRNDAVAALAIAMAVGAKFI 106 (257)
T ss_pred HHHHHHHHHHhCCCCEEEEecCCCCCCcC--CCCHHHHHHHHHHHHHHHHhcCCCeeeeeecCCCHHHHHHHHHhCCCEE
Confidence 345788999999999987743 3555544 5788877665 45567799999999898877766677898866
Q ss_pred EE-----ccCC---cccccHHHHHHHHHHcCCcE----EEEEcC-----CCChH-HHHHhhh--hcceEEEEeecCCCCC
Q 025927 143 SV-----HCEQ---SSTIHLHRTLNQIKDLGAKA----GVVLNP-----ATSLS-AIECVLD--VVDLVLIMSVNPGFGG 202 (246)
Q Consensus 143 t~-----H~E~---~~~~~~~~~i~~Ik~~G~k~----GlAlnP-----~Tpve-~l~~~l~--~vD~VLvMsV~PGfgG 202 (246)
=. ++-+ .-.....+++++-|+.|..+ .+-.+- +.|++ .++..+. ..|-|.|=.. -.|
T Consensus 107 Rv~~~~g~~~~d~G~~~~~a~e~~r~r~~l~~~v~i~adV~~kh~~~l~~~~~~e~a~~~~~~~~aDavivtG~---~TG 183 (257)
T TIGR00259 107 RVNVLTGVYASDQGIIEGNAGELIRYKKLLGSEVKILADIVVKHAVHLGNRDLESIALDTVERGLADAVILSGK---TTG 183 (257)
T ss_pred EEccEeeeEecccccccccHHHHHHHHHHcCCCcEEEeceeecccCcCCCCCHHHHHHHHHHhcCCCEEEECcC---CCC
Confidence 54 3221 01234667777766666432 222222 33443 3333222 3798877533 358
Q ss_pred CcccHHHHHHHHHHHHHHHhcCCCCeEEEeCCCChhhhhhccc
Q 025927 203 QSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVPN 245 (246)
Q Consensus 203 Q~F~~~~l~KI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~l~~ 245 (246)
+++..+.++++++ ... +.-+-+=||+|.+|+.++.+
T Consensus 184 ~~~d~~~l~~vr~---~~~----~~PvllggGvt~eNv~e~l~ 219 (257)
T TIGR00259 184 TEVDLELLKLAKE---TVK----DTPVLAGSGVNLENVEELLS 219 (257)
T ss_pred CCCCHHHHHHHHh---ccC----CCeEEEECCCCHHHHHHHHh
Confidence 8999888876654 111 23588999999999998754
No 108
>PLN02428 lipoic acid synthase
Probab=94.21 E-value=0.42 Score=45.63 Aligned_cols=121 Identities=17% Similarity=0.254 Sum_probs=81.5
Q ss_pred ccChhhHHHHHHHHHHcCCCEEEe------eeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcc-----cchHHH
Q 025927 66 SANFAKLGEQVKAVELAGCDWIHV------DVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPE-----QRVPDF 134 (246)
Q Consensus 66 ~aD~~~l~~~i~~l~~~g~d~lHi------DIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~-----~~i~~~ 134 (246)
-.|.....+.++.+.+.|++.+++ |.-|+- ...=.+.+++||+.. | ++++.+-.|. ..++.+
T Consensus 129 ~~d~~Ep~~vA~~v~~~Glk~vvltSg~rddl~D~g----a~~~~elir~Ir~~~--P-~i~Ie~L~pdf~~d~elL~~L 201 (349)
T PLN02428 129 PPDPDEPENVAEAIASWGVDYVVLTSVDRDDLPDGG----SGHFAETVRRLKQLK--P-EILVEALVPDFRGDLGAVETV 201 (349)
T ss_pred CCChhhHHHHHHHHHHcCCCEEEEEEcCCCCCCccc----HHHHHHHHHHHHHhC--C-CcEEEEeCccccCCHHHHHHH
Confidence 456677778888888899999988 333431 112235667777632 2 5566666554 368889
Q ss_pred HhcCCCEEEEccCCc------------ccccHHHHHHHHHHc--CCc--EEEEEcCCCChHHHHHhhhh-----cceEEE
Q 025927 135 IKAGADIVSVHCEQS------------STIHLHRTLNQIKDL--GAK--AGVVLNPATSLSAIECVLDV-----VDLVLI 193 (246)
Q Consensus 135 ~~agad~It~H~E~~------------~~~~~~~~i~~Ik~~--G~k--~GlAlnP~Tpve~l~~~l~~-----vD~VLv 193 (246)
.++|.|.+...+|+. +.++..++++.+|+. |+. .|+.+.-+-..+++...+.. +|++++
T Consensus 202 ~eAG~d~i~hnlETv~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tkSg~MvGLGET~Edv~e~l~~Lrelgvd~vti 281 (349)
T PLN02428 202 ATSGLDVFAHNIETVERLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTKTSIMLGLGETDEEVVQTMEDLRAAGVDVVTF 281 (349)
T ss_pred HHcCCCEEccCccCcHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEecCCCHHHHHHHHHHHHHcCCCEEee
Confidence 999999999999962 112345677777887 755 48888777666777666553 777766
No 109
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=94.06 E-value=1.1 Score=41.83 Aligned_cols=141 Identities=19% Similarity=0.201 Sum_probs=88.6
Q ss_pred CcEEeeeecccChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCC-------HHHHhhcccCCCCCeeEEEecc--Cc
Q 025927 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIG-------PLVVDALRPVTDLPLDVHLMIV--EP 127 (246)
Q Consensus 57 ~~~IsPSIl~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfg-------p~~I~~ir~~t~~plDvHLMV~--~P 127 (246)
+..+..|+...+...+.+-++.++++|+|++-+.+-=-.--|+. .| .++++++|+.+++|+-|=|=.. +.
T Consensus 99 ~~pvi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~-~g~~~~~~~~eiv~~v~~~~~iPv~vKl~p~~~~~ 177 (325)
T cd04739 99 SIPVIASLNGVSAGGWVDYARQIEEAGADALELNIYALPTDPDI-SGAEVEQRYLDILRAVKSAVTIPVAVKLSPFFSAL 177 (325)
T ss_pred CCeEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCc-ccchHHHHHHHHHHHHHhccCCCEEEEcCCCccCH
Confidence 45678899888888888889999999999987766310000121 22 3678888887788877765321 22
Q ss_pred ccchHHHHhcCCCEEEEccCCcccccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhhhcceEEEEeecCCCCCCcccH
Q 025927 128 EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIE 207 (246)
Q Consensus 128 ~~~i~~~~~agad~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~~vD~VLvMsV~PGfgGQ~F~~ 207 (246)
....+.+.++|+|.|++|--. . +..++.+| ..+ .-..|++|....|
T Consensus 178 ~~~a~~l~~~Gadgi~~~nt~---~----------------~~~id~~~----~~~-----------~~~~glSG~~~~~ 223 (325)
T cd04739 178 AHMAKQLDAAGADGLVLFNRF---Y----------------QPDIDLET----LEV-----------VPNLLLSSPAEIR 223 (325)
T ss_pred HHHHHHHHHcCCCeEEEEcCc---C----------------CCCccccc----cce-----------ecCCCcCCccchh
Confidence 345556667788888776321 0 00111111 000 0135788999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCeEEEeCCCCh
Q 025927 208 SQVKKISDLRRMCLEKGVNPWIEVDGGVGP 237 (246)
Q Consensus 208 ~~l~KI~~lr~l~~~~~~~~~I~VDGGI~~ 237 (246)
..++-|+++++.. ++.|-.-|||..
T Consensus 224 ~al~~v~~v~~~~-----~ipIig~GGI~s 248 (325)
T cd04739 224 LPLRWIAILSGRV-----KASLAASGGVHD 248 (325)
T ss_pred HHHHHHHHHHccc-----CCCEEEECCCCC
Confidence 9988887776543 467888999964
No 110
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=93.92 E-value=0.72 Score=39.89 Aligned_cols=122 Identities=13% Similarity=0.184 Sum_probs=70.6
Q ss_pred CCCCeeEEEeccCcccchH---HHHhcCCCEEEEccCCc---------------ccccHHHHHHHHHHc-CCcEEEEEcC
Q 025927 114 TDLPLDVHLMIVEPEQRVP---DFIKAGADIVSVHCEQS---------------STIHLHRTLNQIKDL-GAKAGVVLNP 174 (246)
Q Consensus 114 t~~plDvHLMV~~P~~~i~---~~~~agad~It~H~E~~---------------~~~~~~~~i~~Ik~~-G~k~GlAlnP 174 (246)
.+.|+-+.|...+|+.|.+ .+.++|+|.|-+|.=.- ....+.++++.+|+. +..+.+-++.
T Consensus 53 ~~~p~~~qi~g~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~ 132 (231)
T cd02801 53 EERPLIVQLGGSDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRL 132 (231)
T ss_pred cCCCEEEEEcCCCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEee
Confidence 4679999999999997765 34557999999995210 122356788888754 3344444443
Q ss_pred C--CC--hHHHHHhhhh--cceEEEEeecC--CCCCCcccHHHHHHHHHHHHHHHhcCCCCeEEEeCCC-Chhhhhhcc
Q 025927 175 A--TS--LSAIECVLDV--VDLVLIMSVNP--GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGV-GPKNAYKVP 244 (246)
Q Consensus 175 ~--Tp--ve~l~~~l~~--vD~VLvMsV~P--GfgGQ~F~~~~l~KI~~lr~l~~~~~~~~~I~VDGGI-~~e~i~~l~ 244 (246)
+ .. ...+.+.+.. +|+|.+....+ ++.+. ..++-++++++ ..+..|.++||| +.+.+.++.
T Consensus 133 ~~~~~~~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~----~~~~~~~~i~~-----~~~ipvi~~Ggi~~~~d~~~~l 202 (231)
T cd02801 133 GWDDEEETLELAKALEDAGASALTVHGRTREQRYSGP----ADWDYIAEIKE-----AVSIPVIANGDIFSLEDALRCL 202 (231)
T ss_pred ccCCchHHHHHHHHHHHhCCCEEEECCCCHHHcCCCC----CCHHHHHHHHh-----CCCCeEEEeCCCCCHHHHHHHH
Confidence 3 22 2222222332 78887755432 12222 22333444444 234679999999 566666553
No 111
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=93.90 E-value=0.69 Score=36.31 Aligned_cols=80 Identities=16% Similarity=0.168 Sum_probs=51.8
Q ss_pred cChhhHHHHHHHH-HHcCCCEEEeeeccCcccCCCCCCHHHHhhcccC--CCCCeeEEEeccCc-ccchHHHHhcCCCEE
Q 025927 67 ANFAKLGEQVKAV-ELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV--TDLPLDVHLMIVEP-EQRVPDFIKAGADIV 142 (246)
Q Consensus 67 aD~~~l~~~i~~l-~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~--t~~plDvHLMV~~P-~~~i~~~~~agad~I 142 (246)
.....+.++++.+ ...|+..+ -+.+|.+..+..+... +..+++. -+.++.++---..+ ..+++.+.++|.+.+
T Consensus 28 ~~~e~i~~~~~~~~~~~~~~~i--~~~~gep~~~~~~~~~-~~~~~~~~~~~~~i~~~t~~~~~~~~~l~~l~~~~~~~i 104 (166)
T PF04055_consen 28 MSPEEILEEIKELKQDKGVKEI--FFGGGEPTLHPDFIEL-LELLRKIKKRGIRISINTNGTLLDEELLDELKKLGVDRI 104 (166)
T ss_dssp CHHHHHHHHHHHHHHHTTHEEE--EEESSTGGGSCHHHHH-HHHHHHCTCTTEEEEEEEESTTHCHHHHHHHHHTTCSEE
T ss_pred CCHHHHHHHHHHHhHhcCCcEE--EEeecCCCcchhHHHH-HHHHHHhhccccceeeeccccchhHHHHHHHHhcCccEE
Confidence 3456777888888 46664444 4568877666544333 3333333 23444444444555 678999999999999
Q ss_pred EEccCCc
Q 025927 143 SVHCEQS 149 (246)
Q Consensus 143 t~H~E~~ 149 (246)
.+++|+.
T Consensus 105 ~~~l~s~ 111 (166)
T PF04055_consen 105 RISLESL 111 (166)
T ss_dssp EEEEBSS
T ss_pred ecccccC
Confidence 9999974
No 112
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=93.87 E-value=4.9 Score=36.52 Aligned_cols=149 Identities=17% Similarity=0.094 Sum_probs=89.6
Q ss_pred cChhhHHHHHHHHHHcCCCEEEeeeccC---cccCCCCCC-HHHHhhcccCCCCCeeEEEeccCc---ccchHHHHhcCC
Q 025927 67 ANFAKLGEQVKAVELAGCDWIHVDVMDG---RFVPNITIG-PLVVDALRPVTDLPLDVHLMIVEP---EQRVPDFIKAGA 139 (246)
Q Consensus 67 aD~~~l~~~i~~l~~~g~d~lHiDIMDG---~FVpN~tfg-p~~I~~ir~~t~~plDvHLMV~~P---~~~i~~~~~aga 139 (246)
.+.....+-.+.|.++|+|+|=+=.-.+ .+..-..|. .+.++++++.......+-.|+..- ...++...+.|+
T Consensus 17 f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~gv 96 (266)
T cd07944 17 FGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGNDDIDLLEPASGSVV 96 (266)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCCCCHHHHHHHhcCCc
Confidence 3445556777889999999986543222 222222333 577777765421123344444332 356777778899
Q ss_pred CE--EEEccCCcccccHHHHHHHHHHcCCcEEEEEc--CCCChHHHHHhhhh-----cceEEEEeecCCCCCCcccHHHH
Q 025927 140 DI--VSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLN--PATSLSAIECVLDV-----VDLVLIMSVNPGFGGQSFIESQV 210 (246)
Q Consensus 140 d~--It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAln--P~Tpve~l~~~l~~-----vD~VLvMsV~PGfgGQ~F~~~~l 210 (246)
+. |.++.+. .+...+.++++|+.|+++-+.+- ..++.+.+.+++.. +|.|-+ + .-.|...-.++.
T Consensus 97 ~~iri~~~~~~--~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~l--~--DT~G~~~P~~v~ 170 (266)
T cd07944 97 DMIRVAFHKHE--FDEALPLIKAIKEKGYEVFFNLMAISGYSDEELLELLELVNEIKPDVFYI--V--DSFGSMYPEDIK 170 (266)
T ss_pred CEEEEeccccc--HHHHHHHHHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEEEE--e--cCCCCCCHHHHH
Confidence 96 5555553 45677889999999998765543 34667777777654 444333 2 334555556666
Q ss_pred HHHHHHHHHHH
Q 025927 211 KKISDLRRMCL 221 (246)
Q Consensus 211 ~KI~~lr~l~~ 221 (246)
+.++.+|+..+
T Consensus 171 ~lv~~l~~~~~ 181 (266)
T cd07944 171 RIISLLRSNLD 181 (266)
T ss_pred HHHHHHHHhcC
Confidence 77777776543
No 113
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=93.82 E-value=0.75 Score=44.78 Aligned_cols=109 Identities=19% Similarity=0.325 Sum_probs=64.7
Q ss_pred Ccc--cchHHHHhcCCCEEEEccCCcccccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhh-hcceEEEEeecCCC--
Q 025927 126 EPE--QRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGF-- 200 (246)
Q Consensus 126 ~P~--~~i~~~~~agad~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~-~vD~VLvMsV~PGf-- 200 (246)
+|+ +.++.++++|+|.|.+-.=.-......+++++||+.--..-|...--...+..+.+++ -+|.|-+ ++.||-
T Consensus 151 ~~~~~~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~aGaD~I~v-G~g~Gs~c 229 (404)
T PRK06843 151 DIDTIERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKV-GIGPGSIC 229 (404)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHcCCCEEEE-CCCCCcCC
Confidence 455 6788999999999997332100234567777887643223344433344555556655 4999886 777863
Q ss_pred CCCccc---HHHHHHHHHHHHHHHhcCCCCeEEEeCCCCh
Q 025927 201 GGQSFI---ESQVKKISDLRRMCLEKGVNPWIEVDGGVGP 237 (246)
Q Consensus 201 gGQ~F~---~~~l~KI~~lr~l~~~~~~~~~I~VDGGI~~ 237 (246)
+++... ...+.-+..+++..++. +..|..||||+.
T Consensus 230 ~tr~~~g~g~p~ltai~~v~~~~~~~--~vpVIAdGGI~~ 267 (404)
T PRK06843 230 TTRIVAGVGVPQITAICDVYEVCKNT--NICIIADGGIRF 267 (404)
T ss_pred cceeecCCCCChHHHHHHHHHHHhhc--CCeEEEeCCCCC
Confidence 333221 12444455556665443 356889999954
No 114
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=93.78 E-value=3.1 Score=37.27 Aligned_cols=158 Identities=11% Similarity=0.106 Sum_probs=95.8
Q ss_pred ChhhHHHHHHHHHHcCCCEEEe-eeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEEEcc
Q 025927 68 NFAKLGEQVKAVELAGCDWIHV-DVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHC 146 (246)
Q Consensus 68 D~~~l~~~i~~l~~~g~d~lHi-DIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It~H~ 146 (246)
|+..+ .+.+.+.|++++|+ |+ |+.+ +-.-..++|+++.+.+..|+.+===+... ..++.+.+.|++.|.+=-
T Consensus 31 dP~~~---a~~~~~~ga~~lhivDL-d~a~--~~~~n~~~i~~i~~~~~~~v~vGGGIrs~-e~~~~~l~~Ga~kvvigt 103 (232)
T PRK13586 31 NPIEI---ASKLYNEGYTRIHVVDL-DAAE--GVGNNEMYIKEISKIGFDWIQVGGGIRDI-EKAKRLLSLDVNALVFST 103 (232)
T ss_pred CHHHH---HHHHHHCCCCEEEEEEC-CCcC--CCcchHHHHHHHHhhCCCCEEEeCCcCCH-HHHHHHHHCCCCEEEECc
Confidence 66655 55567789999997 55 7764 44444588888876322243332233443 346778889999999988
Q ss_pred CCcccccHHHHHHHHHHcC-CcEEEEEcC------------CC---ChHHHHHhhhh-cceEEEEeecCCCCCCcccHHH
Q 025927 147 EQSSTIHLHRTLNQIKDLG-AKAGVVLNP------------AT---SLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQ 209 (246)
Q Consensus 147 E~~~~~~~~~~i~~Ik~~G-~k~GlAlnP------------~T---pve~l~~~l~~-vD~VLvMsV~PGfgGQ~F~~~~ 209 (246)
++ ..+++.+-+..++.| -++-++|.. .| +.+.++.+-+. +.-+++++++---.++-++-+.
T Consensus 104 ~a--~~~p~~~~~~~~~~g~~~ivvslD~~~~~~v~~~gw~~~~~~~~e~~~~l~~~g~~~ii~tdI~~dGt~~G~d~el 181 (232)
T PRK13586 104 IV--FTNFNLFHDIVREIGSNRVLVSIDYDNTKRVLIRGWKEKSMEVIDGIKKVNELELLGIIFTYISNEGTTKGIDYNV 181 (232)
T ss_pred hh--hCCHHHHHHHHHHhCCCCEEEEEEcCCCCEEEccCCeeCCCCHHHHHHHHHhcCCCEEEEecccccccCcCcCHHH
Confidence 86 356655555566664 233333433 11 22333333222 5689999999876778888887
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEeCCCCh-hhhhhc
Q 025927 210 VKKISDLRRMCLEKGVNPWIEVDGGVGP-KNAYKV 243 (246)
Q Consensus 210 l~KI~~lr~l~~~~~~~~~I~VDGGI~~-e~i~~l 243 (246)
++++++ . . +. +.+=||++. +.+.++
T Consensus 182 ~~~~~~---~---~--~~-viasGGv~s~~Dl~~l 207 (232)
T PRK13586 182 KDYARL---I---R--GL-KEYAGGVSSDADLEYL 207 (232)
T ss_pred HHHHHh---C---C--CC-EEEECCCCCHHHHHHH
Confidence 766543 1 1 23 455799976 455544
No 115
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=93.69 E-value=1.4 Score=39.34 Aligned_cols=134 Identities=12% Similarity=0.184 Sum_probs=82.9
Q ss_pred ccChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccC---C-CCCeeEEEe----ccCcc---------
Q 025927 66 SANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV---T-DLPLDVHLM----IVEPE--------- 128 (246)
Q Consensus 66 ~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~---t-~~plDvHLM----V~~P~--------- 128 (246)
|++ ..+.+.++.+.+.|.|.+.+++-.....++...+++.++++++. . ++.+.+|.- ..+|.
T Consensus 7 ~~~-~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~ 85 (279)
T cd00019 7 AAG-FGLENALKRAKEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKAIAEEGPSICLSVHAPYLINLASPDKEKREKSIE 85 (279)
T ss_pred ccc-ccHHHHHHHHHHcCCCEEEEEcCCCCccCCCCCCHHHHHHHHHHHHHcCCCcEEEEcCceeccCCCCHHHHHHHHH
Confidence 344 78899999999999999999865544444444577888888663 2 456777731 11332
Q ss_pred ---cchHHHHhcCCCEEEEccCCcc----c-------ccHHHHHHHHHHcCCcEEEEEcCC------CChHHHHHhhhhc
Q 025927 129 ---QRVPDFIKAGADIVSVHCEQSS----T-------IHLHRTLNQIKDLGAKAGVVLNPA------TSLSAIECVLDVV 188 (246)
Q Consensus 129 ---~~i~~~~~agad~It~H~E~~~----~-------~~~~~~i~~Ik~~G~k~GlAlnP~------Tpve~l~~~l~~v 188 (246)
+.++...+.|++++.+|.-... . ..+.++.+..++.|++.++=-.+. +++..+..+++.+
T Consensus 86 ~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn~~~~~~~~~~t~~~~~~li~~v 165 (279)
T cd00019 86 RLKDEIERCEELGIRLLVFHPGSYLGQSKEEGLKRVIEALNELIDKAETKGVVIALETMAGQGNEIGSSFEELKEIIDLI 165 (279)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHhc
Confidence 3455556679999999876321 0 112233333345666655533222 3457777888888
Q ss_pred c-e-EEEEeecCCC
Q 025927 189 D-L-VLIMSVNPGF 200 (246)
Q Consensus 189 D-~-VLvMsV~PGf 200 (246)
| . -+=+..++|-
T Consensus 166 ~~~~~~g~~lD~~h 179 (279)
T cd00019 166 KEKPRVGVCIDTCH 179 (279)
T ss_pred CCCCCeEEEEEhhh
Confidence 7 3 3446777763
No 116
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=93.58 E-value=3.6 Score=35.51 Aligned_cols=157 Identities=14% Similarity=0.083 Sum_probs=95.4
Q ss_pred EEeeeecccChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCC-e-eEEEeccCcccchHHHHh
Q 025927 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLP-L-DVHLMIVEPEQRVPDFIK 136 (246)
Q Consensus 59 ~IsPSIl~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~p-l-DvHLMV~~P~~~i~~~~~ 136 (246)
.+-|=+-..|.....+.++.+.+.|++++.+=.-+-. ..+.++.+++....- . ...+++. ..++...+
T Consensus 13 ~~~~v~r~~~~~~~~~~~~~~~~~Gv~~vqlr~k~~~-------~~e~~~~~~~~~~~~~~g~gtvl~~---d~~~~A~~ 82 (187)
T PRK07455 13 RAIAVIRAPDLELGLQMAEAVAAGGMRLIEITWNSDQ-------PAELISQLREKLPECIIGTGTILTL---EDLEEAIA 82 (187)
T ss_pred CEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCC-------HHHHHHHHHHhCCCcEEeEEEEEcH---HHHHHHHH
Confidence 3455566678888889999999999999998543321 235666665543321 1 2233333 56788899
Q ss_pred cCCCEEEEccCCcccccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhhhcceEEEEeecCCCCCCcccHHHHHHHHHH
Q 025927 137 AGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDL 216 (246)
Q Consensus 137 agad~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~~vD~VLvMsV~PGfgGQ~F~~~~l~KI~~l 216 (246)
+|||.+...... . ..+...+.++.. ..+...|+-|..+-.-.-+|+|=+ -| .... .-++-++.+
T Consensus 83 ~gAdgv~~p~~~---~---~~~~~~~~~~~~--~i~G~~t~~e~~~A~~~Gadyv~~---Fp---t~~~--~G~~~l~~~ 146 (187)
T PRK07455 83 AGAQFCFTPHVD---P---ELIEAAVAQDIP--IIPGALTPTEIVTAWQAGASCVKV---FP---VQAV--GGADYIKSL 146 (187)
T ss_pred cCCCEEECCCCC---H---HHHHHHHHcCCC--EEcCcCCHHHHHHHHHCCCCEEEE---Cc---CCcc--cCHHHHHHH
Confidence 999987554331 1 234455556654 223345666655554456899887 22 2221 113445555
Q ss_pred HHHHHhcCCCCeEEEeCCCChhhhhhccc
Q 025927 217 RRMCLEKGVNPWIEVDGGVGPKNAYKVPN 245 (246)
Q Consensus 217 r~l~~~~~~~~~I~VDGGI~~e~i~~l~~ 245 (246)
++.++ +..+..=||||.+|++++.+
T Consensus 147 ~~~~~----~ipvvaiGGI~~~n~~~~l~ 171 (187)
T PRK07455 147 QGPLG----HIPLIPTGGVTLENAQAFIQ 171 (187)
T ss_pred HhhCC----CCcEEEeCCCCHHHHHHHHH
Confidence 55442 24688899999999988764
No 117
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=93.56 E-value=3 Score=38.03 Aligned_cols=180 Identities=16% Similarity=0.221 Sum_probs=102.1
Q ss_pred CCcEEeeeecccChhhHHHHHHHHHHcCCCEEEe-----eeccCc-----------ccCCCCC---CH-HHHhhccc---
Q 025927 56 SDIIVSPSILSANFAKLGEQVKAVELAGCDWIHV-----DVMDGR-----------FVPNITI---GP-LVVDALRP--- 112 (246)
Q Consensus 56 ~~~~IsPSIl~aD~~~l~~~i~~l~~~g~d~lHi-----DIMDG~-----------FVpN~tf---gp-~~I~~ir~--- 112 (246)
+.+.++|+.+..+ .+.++.+.+.|+..+=+ +-..|+ ++..+++ |. .+++.+++
T Consensus 12 npi~~aag~~~~~----~~~~~~~~~~G~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~g~~~~~~~~~~~~~ 87 (300)
T TIGR01037 12 NPLILASGIMGSG----VESLRRIDRSGAGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNPGVEAFLEELKPVRE 87 (300)
T ss_pred CCCEeCCcCCCCC----HHHHHHHHHcCCcEEEeCccccccccCCCCCeEEecccHHhhhccCCCcCHHHHHHHHHHHhc
Confidence 4677777775332 23344555667665544 222332 3333333 22 23444433
Q ss_pred CCCCCeeEEEeccCcccchHH---HHhc--CCCEEEEccCC--c---------ccccHHHHHHHHHHc-CCcEEEEEcCC
Q 025927 113 VTDLPLDVHLMIVEPEQRVPD---FIKA--GADIVSVHCEQ--S---------STIHLHRTLNQIKDL-GAKAGVVLNPA 175 (246)
Q Consensus 113 ~t~~plDvHLMV~~P~~~i~~---~~~a--gad~It~H~E~--~---------~~~~~~~~i~~Ik~~-G~k~GlAlnP~ 175 (246)
..+.|+-+.++-.+|+.|.+. +.++ ++|.|-+-+=. . ..+.+.++++.+|+. ++.+.+=++|+
T Consensus 88 ~~~~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~~pv~vKi~~~ 167 (300)
T TIGR01037 88 EFPTPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKTDVPVFAKLSPN 167 (300)
T ss_pred cCCCcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEECCCC
Confidence 234589999999999988653 3334 38888774321 0 112356788888875 67778777765
Q ss_pred C-ChHHHHHhhhh--cceEEEEeecC------------------CCCCCcccHHHHHHHHHHHHHHHhcCCCCeEEEeCC
Q 025927 176 T-SLSAIECVLDV--VDLVLIMSVNP------------------GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGG 234 (246)
Q Consensus 176 T-pve~l~~~l~~--vD~VLvMsV~P------------------GfgGQ~F~~~~l~KI~~lr~l~~~~~~~~~I~VDGG 234 (246)
. ....+...+.. +|.|.+-..-+ |+.|....|-.++-++++++.. ++.|..-||
T Consensus 168 ~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~-----~ipvi~~GG 242 (300)
T TIGR01037 168 VTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMV-----DIPIIGVGG 242 (300)
T ss_pred hhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcC-----CCCEEEECC
Confidence 3 33344444443 89988742211 3445545555566666655532 356788999
Q ss_pred C-Chhhhhhcc
Q 025927 235 V-GPKNAYKVP 244 (246)
Q Consensus 235 I-~~e~i~~l~ 244 (246)
| +.+.+.++.
T Consensus 243 I~s~~da~~~l 253 (300)
T TIGR01037 243 ITSFEDALEFL 253 (300)
T ss_pred CCCHHHHHHHH
Confidence 9 566665543
No 118
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=93.46 E-value=0.59 Score=43.73 Aligned_cols=116 Identities=15% Similarity=0.192 Sum_probs=75.4
Q ss_pred ccChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCC--HHHHhhcccCCCCCeeEEEec------------cCcccch
Q 025927 66 SANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIG--PLVVDALRPVTDLPLDVHLMI------------VEPEQRV 131 (246)
Q Consensus 66 ~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfg--p~~I~~ir~~t~~plDvHLMV------------~~P~~~i 131 (246)
..+..++.++++.+.+.|+..+|+- +|.. |...+. .++++.|++.. ..+.+|..+ ......+
T Consensus 69 ~ls~eeI~e~~~~~~~~G~~~i~l~--gG~~-p~~~~~~~~~i~~~Ik~~~-~~i~~~~~t~~ei~~~~~~~g~~~~e~l 144 (343)
T TIGR03551 69 LLSLEEIAERAAEAWKAGATEVCIQ--GGIH-PDLDGDFYLDILRAVKEEV-PGMHIHAFSPMEVYYGARNSGLSVEEAL 144 (343)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEE--eCCC-CCCCHHHHHHHHHHHHHHC-CCceEEecCHHHHHHHHHHcCCCHHHHH
Confidence 3578889999999999999988876 7755 544443 35677777642 223444421 1124668
Q ss_pred HHHHhcCCCEEE-EccCCc-------------ccccHHHHHHHHHHcCCcE--EEEEcCCCChHHHHHhh
Q 025927 132 PDFIKAGADIVS-VHCEQS-------------STIHLHRTLNQIKDLGAKA--GVVLNPATSLSAIECVL 185 (246)
Q Consensus 132 ~~~~~agad~It-~H~E~~-------------~~~~~~~~i~~Ik~~G~k~--GlAlnP~Tpve~l~~~l 185 (246)
+.|.+||.+.+. .-.|.. +.++..++++.++++|+++ |+.+...-..++..+.+
T Consensus 145 ~~LkeAGl~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi~v~s~~i~G~~Et~ed~~~~l 214 (343)
T TIGR03551 145 KRLKEAGLDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTATIMYGHVETPEHWVDHL 214 (343)
T ss_pred HHHHHhCcccccCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcccceEEEecCCCHHHHHHHH
Confidence 899999999775 223322 1123568899999999887 77777555555555443
No 119
>PRK12928 lipoyl synthase; Provisional
Probab=93.41 E-value=0.8 Score=42.37 Aligned_cols=180 Identities=12% Similarity=0.162 Sum_probs=104.1
Q ss_pred CCCCCceeccccceeeeeeccccccCCCCCcEEee----eecccChhhHHHHHHHHHHcCCCEEEeeeccCcccCCC-CC
Q 025927 28 NQPSSLSFTRRRIQTIVKASARVDKFSKSDIIVSP----SILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNI-TI 102 (246)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IsP----SIl~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~-tf 102 (246)
+-|+--.|..+++.+.+.-+ +-|.. .+..+. .-...++..+.+.++.+.+.|++.+|+-=-+ .+++ ..
T Consensus 48 ~~~~~~~~~~~~~~tfv~is---~gC~~-~C~FCa~~~g~~~~~~~eei~~~a~~~~~~G~keivitg~~---~dDl~d~ 120 (290)
T PRK12928 48 RCPNRGECYAQGTATFLIMG---SICTR-RCAFCQVDKGRPMPLDPDEPERVAEAVAALGLRYVVLTSVA---RDDLPDG 120 (290)
T ss_pred CCCcccccCCCCEEEEEEec---ccccC-cCCCCCccCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEe---CCccccc
Confidence 44555566555566655542 11211 111110 0235788899999999999999999982111 1111 12
Q ss_pred C----HHHHhhcccCCCCCeeEEEeccCcc----cchHHHHhcCCCEEEEccCCc-----------ccccHHHHHHHHHH
Q 025927 103 G----PLVVDALRPVTDLPLDVHLMIVEPE----QRVPDFIKAGADIVSVHCEQS-----------STIHLHRTLNQIKD 163 (246)
Q Consensus 103 g----p~~I~~ir~~t~~plDvHLMV~~P~----~~i~~~~~agad~It~H~E~~-----------~~~~~~~~i~~Ik~ 163 (246)
| .+++++|++... .+.+++.+.++. ..+..+.++|++.+..-+|+. +.++..++++.+|+
T Consensus 121 g~~~~~ell~~Ik~~~p-~~~I~~ltp~~~~~~~e~L~~l~~Ag~~i~~hnlEt~~~vl~~m~r~~t~e~~le~l~~ak~ 199 (290)
T PRK12928 121 GAAHFVATIAAIRARNP-GTGIEVLTPDFWGGQRERLATVLAAKPDVFNHNLETVPRLQKAVRRGADYQRSLDLLARAKE 199 (290)
T ss_pred CHHHHHHHHHHHHhcCC-CCEEEEeccccccCCHHHHHHHHHcCchhhcccCcCcHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 3 467778877531 235565555442 346778889998877666743 12235577788888
Q ss_pred cC--C--cEEEEEcCCCChHHHHHhhhh-----cceEEEEe-ecCCCCCCc----ccHHHHHHHHH
Q 025927 164 LG--A--KAGVVLNPATSLSAIECVLDV-----VDLVLIMS-VNPGFGGQS----FIESQVKKISD 215 (246)
Q Consensus 164 ~G--~--k~GlAlnP~Tpve~l~~~l~~-----vD~VLvMs-V~PGfgGQ~----F~~~~l~KI~~ 215 (246)
.| + +.|+.+..+-..+++...+.. +|.|.+.. ..|.-..-+ ..|+.+++.++
T Consensus 200 ~gp~i~~~s~iIvG~GET~ed~~etl~~Lrel~~d~v~i~~Yl~p~~~~~~v~~~~~~~~f~~~~~ 265 (290)
T PRK12928 200 LAPDIPTKSGLMLGLGETEDEVIETLRDLRAVGCDRLTIGQYLRPSLAHLPVQRYWTPEEFEALGQ 265 (290)
T ss_pred hCCCceecccEEEeCCCCHHHHHHHHHHHHhcCCCEEEEEcCCCCCccCCceeeccCHHHHHHHHH
Confidence 87 4 457777777666666665543 67777643 345433222 45666655544
No 120
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=93.23 E-value=2 Score=39.06 Aligned_cols=160 Identities=23% Similarity=0.308 Sum_probs=98.9
Q ss_pred HHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEEEccCCc---c
Q 025927 74 EQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS---S 150 (246)
Q Consensus 74 ~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It~H~E~~---~ 150 (246)
+-....+.+|+|.|=+=.-.= -=-+-.+.+..|++..+.++.+=+-. -+.+++...+..++++|+=+|.- +
T Consensus 26 ~aA~~a~~aGAdgITvHlReD----rRHI~d~Dv~~L~~~~~~~lNlE~a~--t~e~~~ia~~~kP~~vtLVPE~r~e~T 99 (239)
T PF03740_consen 26 EAARIAEEAGADGITVHLRED----RRHIQDRDVRRLRELVKTPLNLEMAP--TEEMVDIALKVKPDQVTLVPEKREELT 99 (239)
T ss_dssp HHHHHHHHTT-SEEEEEB-TT-----SSS-HHHHHHHHHH-SSEEEEEEES--SHHHHHHHHHH--SEEEEE--SGGGBS
T ss_pred HHHHHHHHcCCCEEEeccCCC----cCcCCHHHHHHHHHHcccCEEeccCC--CHHHHHHHHhCCcCEEEECCCCCCCcC
Confidence 445666789999886644331 13556778888998777775554433 34677777888999999999842 1
Q ss_pred ----------cccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhh-hcceEEEEeecCCCCCCccc------HHHHHHH
Q 025927 151 ----------TIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFI------ESQVKKI 213 (246)
Q Consensus 151 ----------~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~-~vD~VLvMsV~PGfgGQ~F~------~~~l~KI 213 (246)
...+..+++.+|+.|+++.|-++|+ .+.++.-.. -+|.|-+-|- -....|. ++.++|+
T Consensus 100 TegGldv~~~~~~l~~~i~~L~~~gIrvSLFiDP~--~~qi~~A~~~Gad~VELhTG---~yA~a~~~~~~~~~ell~~l 174 (239)
T PF03740_consen 100 TEGGLDVAGNRDRLKPVIKRLKDAGIRVSLFIDPD--PEQIEAAKELGADRVELHTG---PYANAFDDAEEAEEELLERL 174 (239)
T ss_dssp TTSSB-TCGGHHHHHHHHHHHHHTT-EEEEEE-S---HHHHHHHHHTT-SEEEEETH---HHHHHSSHHHHHHHHHHHHH
T ss_pred CCcCChhhcCHHHHHHHHHHHHhCCCEEEEEeCCC--HHHHHHHHHcCCCEEEEehh---HhhhhcCCHHHHHHHHHHHH
Confidence 1237789999999999999999998 444443222 4899888764 2222332 2236888
Q ss_pred HHHHHHHHhcCCCCeEEEeCCCChhhhhhcccC
Q 025927 214 SDLRRMCLEKGVNPWIEVDGGVGPKNAYKVPNI 246 (246)
Q Consensus 214 ~~lr~l~~~~~~~~~I~VDGGI~~e~i~~l~~~ 246 (246)
...-++..+.|+ .+..=.|+|.+|++.+.++
T Consensus 175 ~~aa~~a~~lGL--~VnAGHgL~y~N~~~i~~i 205 (239)
T PF03740_consen 175 RDAARYAHELGL--GVNAGHGLNYDNVRPIAAI 205 (239)
T ss_dssp HHHHHHHHHTT---EEEEETT--TTTHHHHHTS
T ss_pred HHHHHHHHHcCC--EEecCCCCCHHHHHHHHhC
Confidence 888777766664 6778899999999887653
No 121
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=93.21 E-value=0.33 Score=43.01 Aligned_cols=73 Identities=21% Similarity=0.316 Sum_probs=58.1
Q ss_pred ChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEEE
Q 025927 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSV 144 (246)
Q Consensus 68 D~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It~ 144 (246)
++..........+..|++|+|++--||-+ ..-.+++++.+|+.++.|+-+=--+.+|++ ++.+.++|||.|.+
T Consensus 132 ~~e~~~~~a~aa~~~G~~~i~Le~~sGa~---~~v~~e~i~~Vk~~~~~Pv~vGGGIrs~e~-a~~l~~~GAD~VVV 204 (205)
T TIGR01769 132 KPEIAAAYCLAAKYFGMKWVYLEAGSGAS---YPVNPETISLVKKASGIPLIVGGGIRSPEI-AYEIVLAGADAIVT 204 (205)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEcCCCCC---CCCCHHHHHHHHHhhCCCEEEeCCCCCHHH-HHHHHHcCCCEEEe
Confidence 33444555666778899999999989874 224499999999999999999999999887 45778889998864
No 122
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=92.99 E-value=5.2 Score=37.59 Aligned_cols=156 Identities=10% Similarity=0.114 Sum_probs=90.9
Q ss_pred ChhhHHHHHHHHHH----cCCCEEEeeeccCcccCCCCCCHHHH----hhcccCCCCCeeEEEeccCcc----cchHHHH
Q 025927 68 NFAKLGEQVKAVEL----AGCDWIHVDVMDGRFVPNITIGPLVV----DALRPVTDLPLDVHLMIVEPE----QRVPDFI 135 (246)
Q Consensus 68 D~~~l~~~i~~l~~----~g~d~lHiDIMDG~FVpN~tfgp~~I----~~ir~~t~~plDvHLMV~~P~----~~i~~~~ 135 (246)
.+..|.+||+...+ .+++.++ +-+|++ ..+.++.+ +.|++......++-+- .||. ..++.+.
T Consensus 32 y~~~L~~Ei~~~~~~~~~~~v~~iy--fGGGTP---s~l~~~~l~~ll~~i~~~~~~~~eitiE-~nP~~~~~e~l~~l~ 105 (350)
T PRK08446 32 YMQALCLDLKFELEQFTDEKIESVF--IGGGTP---STVSAKFYEPIFEIISPYLSKDCEITTE-ANPNSATKAWLKGMK 105 (350)
T ss_pred HHHHHHHHHHHHHhhccCCceeEEE--ECCCcc---ccCCHHHHHHHHHHHHHhcCCCceEEEE-eCCCCCCHHHHHHHH
Confidence 45677777775432 1445444 567765 23444444 4444431222233333 3676 5788889
Q ss_pred hcCCCEEEEccCCcc------------cccHHHHHHHHHHcCCc-EEEEEc---CCCChHHHHHhhhh-----cceEEE-
Q 025927 136 KAGADIVSVHCEQSS------------TIHLHRTLNQIKDLGAK-AGVVLN---PATSLSAIECVLDV-----VDLVLI- 193 (246)
Q Consensus 136 ~agad~It~H~E~~~------------~~~~~~~i~~Ik~~G~k-~GlAln---P~Tpve~l~~~l~~-----vD~VLv- 193 (246)
++|+++|++=+++.. .++..+.++.+|+.|+. +.+=+- |+...+.++.-++. +|.|-+
T Consensus 106 ~~GvnRiSiGvQS~~~~~L~~lgR~~~~~~~~~ai~~lr~~g~~~v~iDli~GlPgqt~~~~~~~l~~~~~l~~~~is~y 185 (350)
T PRK08446 106 NLGVNRISFGVQSFNEDKLKFLGRIHSQKQIIKAIENAKKAGFENISIDLIYDTPLDNKKLLKEELKLAKELPINHLSAY 185 (350)
T ss_pred HcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEec
Confidence 999999999988652 12355688889999986 444333 66666666555543 666655
Q ss_pred -EeecCCCC--C--C-cccHHHHHHHHHHHHHHHhcCCCCeEEEe
Q 025927 194 -MSVNPGFG--G--Q-SFIESQVKKISDLRRMCLEKGVNPWIEVD 232 (246)
Q Consensus 194 -MsV~PGfg--G--Q-~F~~~~l~KI~~lr~l~~~~~~~~~I~VD 232 (246)
++++||-. . | ...+ -+-.+.+.+.+.++|+. ..+++
T Consensus 186 ~L~~~~gT~l~~~~~~~~~~--~~~~~~~~~~l~~~Gy~-~yeis 227 (350)
T PRK08446 186 SLTIEENTPFFEKNHKKKDD--ENLAKFFIEQLEELGFK-QYEIS 227 (350)
T ss_pred cceecCCChhHHhhhcCCCH--HHHHHHHHHHHHHCCCc-EEEee
Confidence 77778721 1 1 1112 23345667788888875 46665
No 123
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=92.94 E-value=3.5 Score=38.87 Aligned_cols=159 Identities=19% Similarity=0.180 Sum_probs=92.3
Q ss_pred hhHHHHHHHHHHc-C---CCEEEeeeccCcccCCCCCCHHHHhhc----ccCCCCCeeEEEec-cCcc----cchHHHHh
Q 025927 70 AKLGEQVKAVELA-G---CDWIHVDVMDGRFVPNITIGPLVVDAL----RPVTDLPLDVHLMI-VEPE----QRVPDFIK 136 (246)
Q Consensus 70 ~~l~~~i~~l~~~-g---~d~lHiDIMDG~FVpN~tfgp~~I~~i----r~~t~~plDvHLMV-~~P~----~~i~~~~~ 136 (246)
..|.+|++...+. | ...-.+-+-+|++ ..++++.++.| ++.-++..++.+-+ .+|. ..++.+.+
T Consensus 40 ~~l~~Ei~~~~~~~~~~~~~i~~i~~GGGTP---s~l~~~~l~~ll~~i~~~~~~~~~~e~t~e~~p~~i~~e~l~~l~~ 116 (375)
T PRK05628 40 DALRAELELAAAVLGDPAPPVSTVFVGGGTP---SLLGAEGLARVLDAVRDTFGLAPGAEVTTEANPESTSPEFFAALRA 116 (375)
T ss_pred HHHHHHHHHHHHhhccCCCceeEEEeCCCcc---ccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCCCCHHHHHHHHH
Confidence 5677777665432 1 1122333456654 22344444443 44333322333333 2666 46778889
Q ss_pred cCCCEEEEccCCcc------------cccHHHHHHHHHHcCCc-EEEEEc---CCCChHHHHHhhhh-----cceEEE--
Q 025927 137 AGADIVSVHCEQSS------------TIHLHRTLNQIKDLGAK-AGVVLN---PATSLSAIECVLDV-----VDLVLI-- 193 (246)
Q Consensus 137 agad~It~H~E~~~------------~~~~~~~i~~Ik~~G~k-~GlAln---P~Tpve~l~~~l~~-----vD~VLv-- 193 (246)
+|+++|++=+|+.. .++..+.++.+|+.|++ +++-+- |+...+.+..-++. +|.|.+
T Consensus 117 ~G~~rvslGvQS~~~~~L~~l~R~~s~~~~~~a~~~l~~~g~~~v~~dli~GlPgqt~~~~~~tl~~~~~l~~~~i~~y~ 196 (375)
T PRK05628 117 AGFTRVSLGMQSAAPHVLAVLDRTHTPGRAVAAAREARAAGFEHVNLDLIYGTPGESDDDWRASLDAALEAGVDHVSAYA 196 (375)
T ss_pred cCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEeccCCCCCHHHHHHHHHHHHhcCCCEEEeee
Confidence 99999999999752 12355778888999988 765543 77777766655543 566544
Q ss_pred EeecCCC--------CCCcc--cHHHHHHHHHHHHHHHhcCCCCeEEEe
Q 025927 194 MSVNPGF--------GGQSF--IESQVKKISDLRRMCLEKGVNPWIEVD 232 (246)
Q Consensus 194 MsV~PGf--------gGQ~F--~~~~l~KI~~lr~l~~~~~~~~~I~VD 232 (246)
+++.||- ++.+. .+...+....+++.+.+.|+. ..+++
T Consensus 197 l~~~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~G~~-~ye~s 244 (375)
T PRK05628 197 LIVEDGTALARRVRRGELPAPDDDVLADRYELADARLSAAGFD-WYEVS 244 (375)
T ss_pred eecCCCChHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHcCCC-eeeec
Confidence 5677873 12221 233455667778888888875 34543
No 124
>PRK09121 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=92.93 E-value=0.4 Score=45.15 Aligned_cols=140 Identities=20% Similarity=0.233 Sum_probs=78.8
Q ss_pred hHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCH--------HHHhhcccCCCCCeeEEEeccCc---------------
Q 025927 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGP--------LVVDALRPVTDLPLDVHLMIVEP--------------- 127 (246)
Q Consensus 71 ~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp--------~~I~~ir~~t~~plDvHLMV~~P--------------- 127 (246)
-+.+|++.|.++|+++|.+| | |.++.++ +.++..-+--+.++-+|+.--+.
T Consensus 157 al~~Ei~~L~~aG~~~IQiD--e----P~l~~~~~~~~~~~v~~~n~~~~g~~~~v~~HvC~G~~~~~~~~~~~~~~~~~ 230 (339)
T PRK09121 157 ILNQEAKELEAAGVDIIQFD--E----PAFNVFFDEVNDWGVAALERAIEGLKCETAVHICYGYGIKANTDWKKTLGSEW 230 (339)
T ss_pred HHHHHHHHHHHCCCCEEEec--c----cHHhhhhHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCcccccccccccc
Confidence 35688999999999999999 4 4443332 22332222123455567765554
Q ss_pred ---ccchHHHHhcCCCEEEEccCCcccccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhh----hcceE--EEEeecC
Q 025927 128 ---EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD----VVDLV--LIMSVNP 198 (246)
Q Consensus 128 ---~~~i~~~~~agad~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~----~vD~V--LvMsV~P 198 (246)
+...+.+.++.+|.+.+-+.. .....+.++.+++..+-.||.=.-.+-+|..+.+.. -+++| -=+.+.|
T Consensus 231 g~y~~i~~~l~~~~vd~~~lE~~~--~r~~~~~l~~~~~~~v~lGvvd~k~~~lE~~e~I~~rI~~a~~~v~~~~l~lsp 308 (339)
T PRK09121 231 RQYEEAFPKLQKSNIDIISLECHN--SRVPMDLLELIRGKKVMVGAIDVASDTIETPEEVADTLRKALQFVDADKLYPCT 308 (339)
T ss_pred ccHHHHHHHHHhCCCCEEEEEecC--CCCCcHHHHhcccCeEEeeeEeCCCCCCCCHHHHHHHHHHHHHhCCHHHEEECC
Confidence 244677888999999987643 232345677775333444554333444444444332 23333 2366777
Q ss_pred --CCCCCcccHHHHHHHHHHHHH
Q 025927 199 --GFGGQSFIESQVKKISDLRRM 219 (246)
Q Consensus 199 --GfgGQ~F~~~~l~KI~~lr~l 219 (246)
||+- --.+...+|++.+.+.
T Consensus 309 dCGf~~-l~~~~a~~KL~~l~~~ 330 (339)
T PRK09121 309 NCGMAP-LSRDVARGKLNALSAG 330 (339)
T ss_pred CCCCCc-CCHHHHHHHHHHHHHH
Confidence 5542 2234567777776654
No 125
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=92.78 E-value=3.6 Score=38.95 Aligned_cols=101 Identities=10% Similarity=0.211 Sum_probs=67.5
Q ss_pred Cccc----chHHHHhcCCCEEEEccCCcc------------cccHHHHHHHHHHcCCc-EEEEEc---CCCChHHHHHhh
Q 025927 126 EPEQ----RVPDFIKAGADIVSVHCEQSS------------TIHLHRTLNQIKDLGAK-AGVVLN---PATSLSAIECVL 185 (246)
Q Consensus 126 ~P~~----~i~~~~~agad~It~H~E~~~------------~~~~~~~i~~Ik~~G~k-~GlAln---P~Tpve~l~~~l 185 (246)
||.. .++.+.++|+++|++=+|+.. .++..+.++.+|+.|.. +++-+- |+...+.++.-+
T Consensus 97 nP~~lt~e~l~~lk~~G~nrisiGvQS~~d~vL~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dlI~GlPgqt~e~~~~tl 176 (353)
T PRK05904 97 NPELITQSQINLLKKNKVNRISLGVQSMNNNILKQLNRTHTIQDSKEAINLLHKNGIYNISCDFLYCLPILKLKDLDEVF 176 (353)
T ss_pred ccCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEeecCCCCCHHHHHHHH
Confidence 5654 467888899999999998751 12366788889999976 665544 566666655544
Q ss_pred hh-----cceEEE--EeecCC--CCCC--ccc-HHHHHHHHHHHHHHHhcCCC
Q 025927 186 DV-----VDLVLI--MSVNPG--FGGQ--SFI-ESQVKKISDLRRMCLEKGVN 226 (246)
Q Consensus 186 ~~-----vD~VLv--MsV~PG--fgGQ--~F~-~~~l~KI~~lr~l~~~~~~~ 226 (246)
+. +|.|-+ ++++|| +..+ ++. +...+..+.+++.+.+.|+.
T Consensus 177 ~~~~~l~p~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~ 229 (353)
T PRK05904 177 NFILKHKINHISFYSLEIKEGSILKKYHYTIDEDKEAEQLNYIKAKFNKLNYK 229 (353)
T ss_pred HHHHhcCCCEEEEEeeEecCCChHhhcCCCCChHHHHHHHHHHHHHHHHcCCc
Confidence 43 566555 677888 3322 222 34566777888888888875
No 126
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=92.76 E-value=1.4 Score=38.18 Aligned_cols=123 Identities=18% Similarity=0.192 Sum_probs=76.3
Q ss_pred ecccChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhccc-CCCCCeeEEEeccCcccchHHHHhcCCCEE
Q 025927 64 ILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRP-VTDLPLDVHLMIVEPEQRVPDFIKAGADIV 142 (246)
Q Consensus 64 Il~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~-~t~~plDvHLMV~~P~~~i~~~~~agad~I 142 (246)
++..|+..-.++++.+.++|+|.+|++..|-.. +.++.+.+ ....-+++...+.++++ ++...+.|++++
T Consensus 75 i~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~~--------~~~~~~~~~~~~~g~~~~v~v~~~~e-~~~~~~~g~~~i 145 (217)
T cd00331 75 VLRKDFIIDPYQIYEARAAGADAVLLIVAALDD--------EQLKELYELARELGMEVLVEVHDEEE-LERALALGAKII 145 (217)
T ss_pred EEECCeecCHHHHHHHHHcCCCEEEEeeccCCH--------HHHHHHHHHHHHcCCeEEEEECCHHH-HHHHHHcCCCEE
Confidence 334565555568999999999999998887331 33333321 11234455444545554 677788999999
Q ss_pred EEccCCc--ccccHHHHHHHHHHc--CCcEEEEEcCCCChHHHHHhhhh-cceEEEEee
Q 025927 143 SVHCEQS--STIHLHRTLNQIKDL--GAKAGVVLNPATSLSAIECVLDV-VDLVLIMSV 196 (246)
Q Consensus 143 t~H~E~~--~~~~~~~~i~~Ik~~--G~k~GlAlnP~Tpve~l~~~l~~-vD~VLvMsV 196 (246)
.++.... ...++ ..++.+++. .-.+=+|.-==++.+.+..++.. +|-|.+.+-
T Consensus 146 ~~t~~~~~~~~~~~-~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~Ga~gvivGsa 203 (217)
T cd00331 146 GINNRDLKTFEVDL-NTTERLAPLIPKDVILVSESGISTPEDVKRLAEAGADAVLIGES 203 (217)
T ss_pred EEeCCCccccCcCH-HHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcCCCEEEECHH
Confidence 9984321 11233 445666554 22344555555677888888876 899888653
No 127
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=92.60 E-value=0.59 Score=44.44 Aligned_cols=87 Identities=23% Similarity=0.310 Sum_probs=55.8
Q ss_pred HHhhcccCCCCCeeEEEec--cCcc-cchHHHHhcCCCEEEEccC--Cc-ccccHHHHHHHHHHcCCcEEEEEcCCCChH
Q 025927 106 VVDALRPVTDLPLDVHLMI--VEPE-QRVPDFIKAGADIVSVHCE--QS-STIHLHRTLNQIKDLGAKAGVVLNPATSLS 179 (246)
Q Consensus 106 ~I~~ir~~t~~plDvHLMV--~~P~-~~i~~~~~agad~It~H~E--~~-~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve 179 (246)
+++.+++--+-.+++||.+ ..+. .-++.|.+||-|=|-||+- +. ......+.+...|+.|+-+|+=+ |.+|-+
T Consensus 99 ~ir~LK~efG~~fHiHLYT~g~~~~~e~l~~L~eAGLDEIRfHp~~~~~~~~e~~i~~l~~A~~~g~dvG~Ei-Paipg~ 177 (353)
T COG2108 99 YIRLLKDEFGEDFHIHLYTTGILATEEALKALAEAGLDEIRFHPPRPGSKSSEKYIENLKIAKKYGMDVGVEI-PAIPGE 177 (353)
T ss_pred HHHHHHHhhccceeEEEeeccccCCHHHHHHHHhCCCCeEEecCCCccccccHHHHHHHHHHHHhCccceeec-CCCcch
Confidence 3444444445569999999 3333 4688999999999999992 21 11223344444459999999987 466653
Q ss_pred -----HHHHhhhh--cceEEE
Q 025927 180 -----AIECVLDV--VDLVLI 193 (246)
Q Consensus 180 -----~l~~~l~~--vD~VLv 193 (246)
.+.++++. +|++.+
T Consensus 178 e~~i~e~~~~~~~~~~~FlNi 198 (353)
T COG2108 178 EEAILEFAKALDENGLDFLNI 198 (353)
T ss_pred HHHHHHHHHHHHhcccceeee
Confidence 34444443 466665
No 128
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=92.60 E-value=6.4 Score=38.12 Aligned_cols=130 Identities=14% Similarity=0.253 Sum_probs=81.8
Q ss_pred ccChhhHHHHHHHHHHcCCCEEEeeeccCcccC------CCCCCHHHHhhcccCCCCCeeEEEeccCccc----chHHHH
Q 025927 66 SANFAKLGEQVKAVELAGCDWIHVDVMDGRFVP------NITIGPLVVDALRPVTDLPLDVHLMIVEPEQ----RVPDFI 135 (246)
Q Consensus 66 ~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVp------N~tfgp~~I~~ir~~t~~plDvHLMV~~P~~----~i~~~~ 135 (246)
+-++.++-+|++.+.+.|++.+.+ .|.+|.. +..| .+.++.+.+..+. ..+.+...+|.. .++.+.
T Consensus 174 sr~~e~V~~Ei~~l~~~g~~eI~l--~d~~~~~y~~~~~~~~~-~~Ll~~l~~~~g~-~~i~~~~~~p~~l~~ell~~~~ 249 (437)
T PRK14331 174 SRRLGSILDEVQWLVDDGVKEIHL--IGQNVTAYGKDIGDVPF-SELLYAVAEIDGV-ERIRFTTGHPRDLDEDIIKAMA 249 (437)
T ss_pred cCCHHHHHHHHHHHHHCCCeEEEE--eeeccccccCCCCCCCH-HHHHHHHhcCCCc-cEEEEeccCcccCCHHHHHHHH
Confidence 446778889999999889887765 3433321 1111 3456665554333 357777777754 566677
Q ss_pred hc--CCCEEEEccCCcc------------cccHHHHHHHHHHc--CCcEE--EEEc-CCCChHHHHHhhhh-----cceE
Q 025927 136 KA--GADIVSVHCEQSS------------TIHLHRTLNQIKDL--GAKAG--VVLN-PATSLSAIECVLDV-----VDLV 191 (246)
Q Consensus 136 ~a--gad~It~H~E~~~------------~~~~~~~i~~Ik~~--G~k~G--lAln-P~Tpve~l~~~l~~-----vD~V 191 (246)
++ |+.++.+-+|+.+ .++..+.++.+|+. |+.++ +.+. |+...++++..++. .|.+
T Consensus 250 ~~~~~~~~l~igiqSgsd~vLk~m~R~~t~~~~~~~v~~lr~~~~gi~i~~d~IvG~PgET~ed~~~tl~~l~~l~~~~i 329 (437)
T PRK14331 250 DIPQVCEHLHLPFQAGSDRILKLMDRGYTKEEYLEKIELLKEYIPDITFSTDIIVGFPTETEEDFEETLDVLKKVEFEQV 329 (437)
T ss_pred cCCccCCceecccccCChHHHHHcCCCCCHHHHHHHHHHHHHhCCCCEEecCEEEECCCCCHHHHHHHHHHHHhcCccee
Confidence 76 4889999999642 22356778888887 77654 3333 77777777665543 3554
Q ss_pred EE--EeecCC
Q 025927 192 LI--MSVNPG 199 (246)
Q Consensus 192 Lv--MsV~PG 199 (246)
.+ .+-.||
T Consensus 330 ~~f~~sp~pG 339 (437)
T PRK14331 330 FSFKYSPRPG 339 (437)
T ss_pred eeeEecCCCC
Confidence 44 666788
No 129
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=92.52 E-value=0.6 Score=43.35 Aligned_cols=78 Identities=14% Similarity=0.250 Sum_probs=55.7
Q ss_pred cHHHHHHHHHHc--CCcEEEEEcCCCChHHHHHhhhh-cceEEEEeecCCCCCCcccHHHHHHHHHHHHHHHhcCCCCeE
Q 025927 153 HLHRTLNQIKDL--GAKAGVVLNPATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWI 229 (246)
Q Consensus 153 ~~~~~i~~Ik~~--G~k~GlAlnP~Tpve~l~~~l~~-vD~VLvMsV~PGfgGQ~F~~~~l~KI~~lr~l~~~~~~~~~I 229 (246)
.+...++.+|+. ..+ +.+-.. +++.+++.++. +|.|++ -+|.|+.++++.+ ++++.+.+..+
T Consensus 175 ~i~~av~~~r~~~~~~k--IeVEv~-tleqa~ea~~agaDiI~L---------Dn~~~e~l~~av~---~~~~~~~~~~l 239 (284)
T PRK06096 175 DWSGAINQLRRHAPEKK--IVVEAD-TPKEAIAALRAQPDVLQL---------DKFSPQQATEIAQ---IAPSLAPHCTL 239 (284)
T ss_pred cHHHHHHHHHHhCCCCC--EEEECC-CHHHHHHHHHcCCCEEEE---------CCCCHHHHHHHHH---HhhccCCCeEE
Confidence 355677888876 334 555544 67777777765 999998 5777887766654 44433456789
Q ss_pred EEeCCCChhhhhhccc
Q 025927 230 EVDGGVGPKNAYKVPN 245 (246)
Q Consensus 230 ~VDGGI~~e~i~~l~~ 245 (246)
++=||||.+|++++++
T Consensus 240 eaSGGI~~~ni~~yA~ 255 (284)
T PRK06096 240 SLAGGINLNTLKNYAD 255 (284)
T ss_pred EEECCCCHHHHHHHHh
Confidence 9999999999998754
No 130
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=92.51 E-value=1.6 Score=43.59 Aligned_cols=158 Identities=19% Similarity=0.274 Sum_probs=85.6
Q ss_pred hhHHHHHHHHHHcCCCEEEeeecc--CcccCCCCCCHHHHhhcccCCCCC-----eeEEEec------cCcccchHHHHh
Q 025927 70 AKLGEQVKAVELAGCDWIHVDVMD--GRFVPNITIGPLVVDALRPVTDLP-----LDVHLMI------VEPEQRVPDFIK 136 (246)
Q Consensus 70 ~~l~~~i~~l~~~g~d~lHiDIMD--G~FVpN~tfgp~~I~~ir~~t~~p-----lDvHLMV------~~P~~~i~~~~~ 136 (246)
..+.+-++.+.+.++..+= |.| |+.+ |.-..++|.+....| -.=+|+| .+-..-++.+++
T Consensus 180 ~~l~eAl~lM~e~~i~~LP--VVD~~g~Lv-----GIIT~~Dilk~~~~P~a~~d~~grL~V~~av~~~~~~~ra~~Lv~ 252 (502)
T PRK07107 180 TTLKEANDIIWDHKLNTLP--IVDKNGNLV-----YLVFRKDYDSHKENPLELLDSSKRYVVGAGINTRDYAERVPALVE 252 (502)
T ss_pred CcHHHHHHHHHHcCCCEEE--EEcCCCeEE-----EEEEhHHHHhcccChhhhhhhccCeeeeeccChhhHHHHHHHHHH
Confidence 4667778888888887654 444 3332 111122221111111 1223332 121245778899
Q ss_pred cCCCEEEEccCCcccccHHHHHHHHHHc-CCcEEEEEcCC--CChHHHHHhhh-hcceEEEEeecCC-----C----CCC
Q 025927 137 AGADIVSVHCEQSSTIHLHRTLNQIKDL-GAKAGVVLNPA--TSLSAIECVLD-VVDLVLIMSVNPG-----F----GGQ 203 (246)
Q Consensus 137 agad~It~H~E~~~~~~~~~~i~~Ik~~-G~k~GlAlnP~--Tpve~l~~~l~-~vD~VLvMsV~PG-----f----gGQ 203 (246)
+|+|.|.+-.-........+.++++|+. +-+ +.|.-+ ...+..+.+++ -+|.|.| ++-|| . .|-
T Consensus 253 aGvd~i~vd~a~g~~~~~~~~i~~ir~~~~~~--~~V~aGnV~t~e~a~~li~aGAd~I~v-g~g~Gs~c~tr~~~~~g~ 329 (502)
T PRK07107 253 AGADVLCIDSSEGYSEWQKRTLDWIREKYGDS--VKVGAGNVVDREGFRYLAEAGADFVKV-GIGGGSICITREQKGIGR 329 (502)
T ss_pred hCCCeEeecCcccccHHHHHHHHHHHHhCCCC--ceEEeccccCHHHHHHHHHcCCCEEEE-CCCCCcCcccccccCCCc
Confidence 9999998741100011235678888864 212 333333 33456667666 5899888 88888 2 233
Q ss_pred cccHHHHHHHHHH-HHHHHhcCCCCeEEEeCCCChh
Q 025927 204 SFIESQVKKISDL-RRMCLEKGVNPWIEVDGGVGPK 238 (246)
Q Consensus 204 ~F~~~~l~KI~~l-r~l~~~~~~~~~I~VDGGI~~e 238 (246)
+-.. ++..+.++ ++++++.|.+..|..||||+..
T Consensus 330 ~~~~-ai~~~~~a~~~~~~~~g~~~~viadgGir~~ 364 (502)
T PRK07107 330 GQAT-ALIEVAKARDEYFEETGVYIPICSDGGIVYD 364 (502)
T ss_pred cHHH-HHHHHHHHHHHHHhhcCCcceEEEcCCCCch
Confidence 3222 33333333 4566677766789999999753
No 131
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=92.48 E-value=2.4 Score=35.05 Aligned_cols=152 Identities=17% Similarity=0.209 Sum_probs=90.6
Q ss_pred ChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCC---CCCeeEEEeccC-------cccchHHHHhc
Q 025927 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVT---DLPLDVHLMIVE-------PEQRVPDFIKA 137 (246)
Q Consensus 68 D~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t---~~plDvHLMV~~-------P~~~i~~~~~a 137 (246)
|+..+++.++.+.+.|++.+ +++ ..+++.+++.. +.|+-++..... -...++...++
T Consensus 11 d~~~~~~~~~~~~~~gv~gi--------~~~-----g~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~ 77 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAV--------CVN-----PGYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDL 77 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEE--------EEC-----HHHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHc
Confidence 88899999999999997754 322 26777776542 378888887665 23566777889
Q ss_pred CCCEEEEccCCc---c--cccHHHHHHHHHHc---CCcEEEEEcCCCC--hHHHHHhh-----hhcceEEEEeecCCCCC
Q 025927 138 GADIVSVHCEQS---S--TIHLHRTLNQIKDL---GAKAGVVLNPATS--LSAIECVL-----DVVDLVLIMSVNPGFGG 202 (246)
Q Consensus 138 gad~It~H~E~~---~--~~~~~~~i~~Ik~~---G~k~GlAlnP~Tp--ve~l~~~l-----~~vD~VLvMsV~PGfgG 202 (246)
|+|.+.++.-.- + .+.+.+.++.+.+. ++.+-+-..|... .+.+.++. ..+|.| -+.+|+..
T Consensus 78 Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~i---K~~~~~~~ 154 (201)
T cd00945 78 GADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGADFI---KTSTGFGG 154 (201)
T ss_pred CCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCCEE---EeCCCCCC
Confidence 999998863210 0 12334555566665 7777777777643 45555432 235543 34444432
Q ss_pred CcccHHHHHHHHHHHHHHHhcCCCCeEEEeCCCC-hhhhh
Q 025927 203 QSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAY 241 (246)
Q Consensus 203 Q~F~~~~l~KI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~ 241 (246)
..+. ++.++++++..+ .++.+.+-||++ .+++.
T Consensus 155 ~~~~---~~~~~~i~~~~~---~~~~v~~~gg~~~~~~~~ 188 (201)
T cd00945 155 GGAT---VEDVKLMKEAVG---GRVGVKAAGGIKTLEDAL 188 (201)
T ss_pred CCCC---HHHHHHHHHhcc---cCCcEEEECCCCCHHHHH
Confidence 2222 233344443332 235688999988 44443
No 132
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=92.36 E-value=8.6 Score=37.18 Aligned_cols=153 Identities=17% Similarity=0.273 Sum_probs=88.8
Q ss_pred hhHHHHHHHHHHc--CCCEEEeeeccCcccCCCCCCH----HHHhhcccCCCCC---eeEEEeccCcc----cchHHHHh
Q 025927 70 AKLGEQVKAVELA--GCDWIHVDVMDGRFVPNITIGP----LVVDALRPVTDLP---LDVHLMIVEPE----QRVPDFIK 136 (246)
Q Consensus 70 ~~l~~~i~~l~~~--g~d~lHiDIMDG~FVpN~tfgp----~~I~~ir~~t~~p---lDvHLMV~~P~----~~i~~~~~ 136 (246)
..|.+|++.+.+. +.+...+-+..|+ |. .+.+ ++++.|++..++. .++.+-+ +|. ..++.+.+
T Consensus 74 ~~L~~Ei~~~~~~~~~~~i~~i~~GGGT--Ps-~l~~~~l~~Ll~~i~~~~~~~~~~~eitiE~-~P~~lt~e~l~~l~~ 149 (430)
T PRK08208 74 DALIRQAEQVAEALAPARFASFAVGGGT--PT-LLNAAELEKLFDSVERVLGVDLGNIPKSVET-SPATTTAEKLALLAA 149 (430)
T ss_pred HHHHHHHHHHHHHcCCCceeEEEEcCCc--cc-cCCHHHHHHHHHHHHHhCCCCCCCceEEEEe-CcCcCCHHHHHHHHH
Confidence 4566677655432 2223333344553 32 2443 4455555543332 2333332 464 56788889
Q ss_pred cCCCEEEEccCCcc------------cccHHHHHHHHHHcCCcE---EEEEc-CCCChHHHHHhhhh-----cceEEE--
Q 025927 137 AGADIVSVHCEQSS------------TIHLHRTLNQIKDLGAKA---GVVLN-PATSLSAIECVLDV-----VDLVLI-- 193 (246)
Q Consensus 137 agad~It~H~E~~~------------~~~~~~~i~~Ik~~G~k~---GlAln-P~Tpve~l~~~l~~-----vD~VLv-- 193 (246)
+|+++|++=+|+.. .++..+.++.+|+.|+.. -+.+. |+...+.++.-++. +|.|-+
T Consensus 150 ~G~~rvslGvQS~~~~~L~~l~R~~~~~~~~~ai~~l~~~g~~~i~~dlI~GlP~qt~e~~~~~l~~~~~l~~~~is~y~ 229 (430)
T PRK08208 150 RGVNRLSIGVQSFHDSELHALHRPQKRADVHQALEWIRAAGFPILNIDLIYGIPGQTHASWMESLDQALVYRPEELFLYP 229 (430)
T ss_pred cCCCEEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHhCCCCEEEEcc
Confidence 99999999999752 124667888999999874 34555 66666666655543 566655
Q ss_pred EeecCCC--CC--CcccHHHHHHHHHHHHHHHhcCCC
Q 025927 194 MSVNPGF--GG--QSFIESQVKKISDLRRMCLEKGVN 226 (246)
Q Consensus 194 MsV~PGf--gG--Q~F~~~~l~KI~~lr~l~~~~~~~ 226 (246)
+++.||- +. .+-.+...+-.+.+++.+.+.|+.
T Consensus 230 L~~~~~T~l~~~~~~~~~~~~~m~~~~~~~L~~~Gy~ 266 (430)
T PRK08208 230 LYVRPLTGLGRRARAWDDQRLSLYRLARDLLLEAGYT 266 (430)
T ss_pred ccccCCCccchhcCCCHHHHHHHHHHHHHHHHHcCCe
Confidence 4566762 22 222355555566677888888874
No 133
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=92.33 E-value=3 Score=40.48 Aligned_cols=158 Identities=15% Similarity=0.179 Sum_probs=88.3
Q ss_pred cEEeeeecccChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEE-ec--cCcccchHHH
Q 025927 58 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHL-MI--VEPEQRVPDF 134 (246)
Q Consensus 58 ~~IsPSIl~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHL-MV--~~P~~~i~~~ 134 (246)
..|-.=++-.|..+.. ++.+.++|+|++-+ |+..+...-...++.+|+. ++ .+=+ |. .+|...++.+
T Consensus 227 ~~I~~DLK~~Di~~~v--v~~~a~aGAD~vTV-----H~ea~~~ti~~ai~~akk~-Gi--kvgVD~lnp~tp~e~i~~l 296 (391)
T PRK13307 227 AFIVADLKTLDTGNLE--ARMAADATADAVVI-----SGLAPISTIEKAIHEAQKT-GI--YSILDMLNVEDPVKLLESL 296 (391)
T ss_pred CeEEEEecccChhhHH--HHHHHhcCCCEEEE-----eccCCHHHHHHHHHHHHHc-CC--EEEEEEcCCCCHHHHHHHh
Confidence 3455555666666554 66667778777654 2221110112245555554 43 3333 22 3566666666
Q ss_pred HhcCCCEEEEcc--CCcccccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhhh-cceEEEEeecCCCCCCcccHHHHH
Q 025927 135 IKAGADIVSVHC--EQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVK 211 (246)
Q Consensus 135 ~~agad~It~H~--E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~~-vD~VLvMsV~PGfgGQ~F~~~~l~ 211 (246)
..++|+|.+|. +........+-++.+|+.+...=+++.++-..+.+..++.. +|.+.+=+-- | +.+ +-.+
T Consensus 297 -~~~vD~Vllht~vdp~~~~~~~~kI~~ikk~~~~~~I~VdGGI~~eti~~l~~aGADivVVGsaI--f-~a~---Dp~~ 369 (391)
T PRK13307 297 -KVKPDVVELHRGIDEEGTEHAWGNIKEIKKAGGKILVAVAGGVRVENVEEALKAGADILVVGRAI--T-KSK---DVRR 369 (391)
T ss_pred -hCCCCEEEEccccCCCcccchHHHHHHHHHhCCCCcEEEECCcCHHHHHHHHHcCCCEEEEeHHH--h-CCC---CHHH
Confidence 77999999994 32112234456788888776777888899889999888764 7865442110 1 222 2334
Q ss_pred HHHHHHHHHHhcCCCCeEEEe
Q 025927 212 KISDLRRMCLEKGVNPWIEVD 232 (246)
Q Consensus 212 KI~~lr~l~~~~~~~~~I~VD 232 (246)
.++++++.+...--+|.|.-|
T Consensus 370 aak~l~~~i~~~~~~~~~~~~ 390 (391)
T PRK13307 370 AAEDFLNKLKPDIDQFRLMTD 390 (391)
T ss_pred HHHHHHHhhccCchhheeecC
Confidence 455556655333223445443
No 134
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=92.31 E-value=2.4 Score=38.91 Aligned_cols=120 Identities=11% Similarity=0.091 Sum_probs=73.9
Q ss_pred hcccCCCCCeeEEEecc-Ccccc---hHHHHhcCCCEEEEccCCccc--ccHHHHHHHHHHc-CCcEEEEEcCCCChHHH
Q 025927 109 ALRPVTDLPLDVHLMIV-EPEQR---VPDFIKAGADIVSVHCEQSST--IHLHRTLNQIKDL-GAKAGVVLNPATSLSAI 181 (246)
Q Consensus 109 ~ir~~t~~plDvHLMV~-~P~~~---i~~~~~agad~It~H~E~~~~--~~~~~~i~~Ik~~-G~k~GlAlnP~Tpve~l 181 (246)
.+++....|+-+.|... +|+.. ++...+.|++.|.+|...... ....+.++++|+. +..+.+-. -.+.+..
T Consensus 109 ~i~~~~~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~~~~~~i~~l~~~~~~pvivK~--v~s~~~a 186 (299)
T cd02809 109 EVAAAAPGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLGRRLTWDDLAWLRSQWKGPLILKG--ILTPEDA 186 (299)
T ss_pred HHHHhcCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCCHHHHHHHHHhcCCCEEEee--cCCHHHH
Confidence 34443447888999876 66643 444466899999999974210 0113578888875 55544432 2556666
Q ss_pred HHhhhh-cceEEEEeecCCCCCCc--ccHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCh
Q 025927 182 ECVLDV-VDLVLIMSVNPGFGGQS--FIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP 237 (246)
Q Consensus 182 ~~~l~~-vD~VLvMsV~PGfgGQ~--F~~~~l~KI~~lr~l~~~~~~~~~I~VDGGI~~ 237 (246)
....+. +|.|.+- |.||.. .-+.+++-+.++++.... +..|-.||||+.
T Consensus 187 ~~a~~~G~d~I~v~----~~gG~~~~~g~~~~~~l~~i~~~~~~---~ipvia~GGI~~ 238 (299)
T cd02809 187 LRAVDAGADGIVVS----NHGGRQLDGAPATIDALPEIVAAVGG---RIEVLLDGGIRR 238 (299)
T ss_pred HHHHHCCCCEEEEc----CCCCCCCCCCcCHHHHHHHHHHHhcC---CCeEEEeCCCCC
Confidence 666553 8888775 233333 245566667777665432 367889999964
No 135
>PRK15108 biotin synthase; Provisional
Probab=92.28 E-value=5.1 Score=37.84 Aligned_cols=161 Identities=16% Similarity=0.201 Sum_probs=97.5
Q ss_pred cChhhHHHHHHHHHHcCCCEEEeeeccCcccC---CCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEE
Q 025927 67 ANFAKLGEQVKAVELAGCDWIHVDVMDGRFVP---NITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVS 143 (246)
Q Consensus 67 aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVp---N~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It 143 (246)
.+...+.+.++.+.+.|++.+|+ +.-|. -| .+-+=.+.++.+|+ .++.+-+++-... ...++.|.++|+|.+.
T Consensus 76 ls~eEI~~~a~~~~~~G~~~i~i-~~~g~-~p~~~~~e~i~~~i~~ik~-~~i~v~~s~G~ls-~e~l~~LkeAGld~~n 151 (345)
T PRK15108 76 MEVEQVLESARKAKAAGSTRFCM-GAAWK-NPHERDMPYLEQMVQGVKA-MGLETCMTLGTLS-ESQAQRLANAGLDYYN 151 (345)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEE-EecCC-CCCcchHHHHHHHHHHHHh-CCCEEEEeCCcCC-HHHHHHHHHcCCCEEe
Confidence 35577778888888899999976 43332 22 12223345666664 3555555555444 6778899999999998
Q ss_pred EccCCc--------c---cccHHHHHHHHHHcCCcE--EEEEcCCCChHHHHHhhh-------hcceEEEEeecC--CC-
Q 025927 144 VHCEQS--------S---TIHLHRTLNQIKDLGAKA--GVVLNPATSLSAIECVLD-------VVDLVLIMSVNP--GF- 200 (246)
Q Consensus 144 ~H~E~~--------~---~~~~~~~i~~Ik~~G~k~--GlAlnP~Tpve~l~~~l~-------~vD~VLvMsV~P--Gf- 200 (246)
+=.|+. . ..+..++++.+++.|+++ |+.+..+-..++....+. .+|.|-+.-..| |-
T Consensus 152 ~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~GlgEt~ed~v~~~~~l~~l~~~~~~ip~~~~~P~~gTp 231 (345)
T PRK15108 152 HNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTP 231 (345)
T ss_pred eccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEeCCCCHHHHHHHHHHHHhccCCCCEEEeCCccCCCCCC
Confidence 877753 0 113557777788889776 566777756655544432 245666655544 42
Q ss_pred -CCCc-c-cHHHHHHHHHHHHHHHhcCCCCeEEEeCCC
Q 025927 201 -GGQS-F-IESQVKKISDLRRMCLEKGVNPWIEVDGGV 235 (246)
Q Consensus 201 -gGQ~-F-~~~~l~KI~~lr~l~~~~~~~~~I~VDGGI 235 (246)
.+.+ . ..+.++.|.-+|-+++.. .|-+.||-
T Consensus 232 l~~~~~~~~~e~lr~iAi~Rl~lp~~----~i~i~~g~ 265 (345)
T PRK15108 232 LADNDDVDAFDFIRTIAVARIMMPTS----YVRLSAGR 265 (345)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCc----eeeecccH
Confidence 2322 1 235566666666666542 46666764
No 136
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=92.27 E-value=2.2 Score=38.75 Aligned_cols=154 Identities=22% Similarity=0.277 Sum_probs=87.6
Q ss_pred HHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcc---------------cchHHHHhcCCC
Q 025927 76 VKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPE---------------QRVPDFIKAGAD 140 (246)
Q Consensus 76 i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~---------------~~i~~~~~agad 140 (246)
+....++|+|.+- +-|+-=+-.+|=+.-+++..++. .++-+|.|+ +|. +-|+...++|++
T Consensus 14 l~~A~~~GAdRiE--LC~~La~GG~TPSyG~~k~a~~~--~~ipv~~MI-RPRgGdFvY~~~E~~iM~~DI~~~~~lG~~ 88 (241)
T COG3142 14 LLAAQAAGADRIE--LCDALAEGGLTPSYGVIKEAVEL--SKIPVYVMI-RPRGGDFVYSDDELEIMLEDIRLARELGVQ 88 (241)
T ss_pred HHHHHHcCCceee--hhhccccCCCCCCHHHHHHHHhh--cCCceEEEE-ecCCCCcccChHHHHHHHHHHHHHHHcCCC
Confidence 4556788999864 34443444455556788888876 445578888 453 236667778888
Q ss_pred EEEEccCCc-ccccHHHHHHHHHHcCCcEEEEEcCC-----CChHHHHHhhhh-cceEEEEeecCCCCCCcccHHHHHHH
Q 025927 141 IVSVHCEQS-STIHLHRTLNQIKDLGAKAGVVLNPA-----TSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKI 213 (246)
Q Consensus 141 ~It~H~E~~-~~~~~~~~i~~Ik~~G~k~GlAlnP~-----Tpve~l~~~l~~-vD~VLvMsV~PGfgGQ~F~~~~l~KI 213 (246)
-|.+=.=+. ...|..++=+.+...| --|+.+.-. .|.+.++.+++. +..|| | .||+ ...++-+
T Consensus 89 GVV~G~lt~dg~iD~~~le~Li~aA~-gL~vTFHrAFD~~~d~~~ale~li~~Gv~RIL--T-----sGg~--~sa~eg~ 158 (241)
T COG3142 89 GVVLGALTADGNIDMPRLEKLIEAAG-GLGVTFHRAFDECPDPLEALEQLIELGVERIL--T-----SGGK--ASALEGL 158 (241)
T ss_pred cEEEeeecCCCccCHHHHHHHHHHcc-CCceeeehhhhhcCCHHHHHHHHHHCCCcEEe--c-----CCCc--CchhhhH
Confidence 777654321 1123222222222222 233333211 255666655432 33333 2 3444 4555555
Q ss_pred HHHHHHHHhcCCCCeEEEeCCCChhhhhhcc
Q 025927 214 SDLRRMCLEKGVNPWIEVDGGVGPKNAYKVP 244 (246)
Q Consensus 214 ~~lr~l~~~~~~~~~I~VDGGI~~e~i~~l~ 244 (246)
..++++++..+-.+.|.+=|||+.+|+..+.
T Consensus 159 ~~l~~li~~a~gri~Im~GaGV~~~N~~~l~ 189 (241)
T COG3142 159 DLLKRLIEQAKGRIIIMAGAGVRAENIAELV 189 (241)
T ss_pred HHHHHHHHHhcCCEEEEeCCCCCHHHHHHHH
Confidence 6666666655556889999999999998874
No 137
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=92.18 E-value=2.4 Score=39.75 Aligned_cols=111 Identities=16% Similarity=0.267 Sum_probs=67.5
Q ss_pred ccchHHHHhcCCCEEEEccCCcccccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhhh-cceEEEEeecCCCC--CCc
Q 025927 128 EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV-VDLVLIMSVNPGFG--GQS 204 (246)
Q Consensus 128 ~~~i~~~~~agad~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~~-vD~VLvMsV~PGfg--GQ~ 204 (246)
...++.++++|++.|.+....-....+.+.++++|+.+-++-+....-++.+....+++. +|.|.+ .+-||.. ++.
T Consensus 96 ~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~v-g~g~G~~~~t~~ 174 (325)
T cd00381 96 KERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKV-GIGPGSICTTRI 174 (325)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhcCCCEEEE-CCCCCcCcccce
Confidence 367888899999998875532112356778999998762333434444666777777664 999876 5556531 111
Q ss_pred ---ccHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCh-hhhh
Q 025927 205 ---FIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP-KNAY 241 (246)
Q Consensus 205 ---F~~~~l~KI~~lr~l~~~~~~~~~I~VDGGI~~-e~i~ 241 (246)
.-...+.-|.++++..++. +..+-.||||+. ..+.
T Consensus 175 ~~g~g~p~~~~i~~v~~~~~~~--~vpVIA~GGI~~~~di~ 213 (325)
T cd00381 175 VTGVGVPQATAVADVAAAARDY--GVPVIADGGIRTSGDIV 213 (325)
T ss_pred eCCCCCCHHHHHHHHHHHHhhc--CCcEEecCCCCCHHHHH
Confidence 1112344455555555443 345779999975 4443
No 138
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=92.16 E-value=3.3 Score=37.71 Aligned_cols=149 Identities=17% Similarity=0.203 Sum_probs=83.9
Q ss_pred eecccChhhHHHHHHHHHHcCCCEEEeeeccCcccCC--CCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhc--C
Q 025927 63 SILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPN--ITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKA--G 138 (246)
Q Consensus 63 SIl~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN--~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~a--g 138 (246)
.+..-|+....+..++..+.|+|+|=+-.. . -+. ..-=.+.|+.+++.++.|+ =+-+.+|+..- .-.++ |
T Consensus 18 ~~~~~d~~~i~~~A~~~~~~GAdiIDVg~~--~-~~~eE~~r~~~~v~~l~~~~~~pl--sIDT~~~~v~e-aaL~~~~G 91 (261)
T PRK07535 18 AIEAKDAAFIQKLALKQAEAGADYLDVNAG--T-AVEEEPETMEWLVETVQEVVDVPL--CIDSPNPAAIE-AGLKVAKG 91 (261)
T ss_pred HHHcCCHHHHHHHHHHHHHCCCCEEEECCC--C-CchhHHHHHHHHHHHHHHhCCCCE--EEeCCCHHHHH-HHHHhCCC
Confidence 456678889999999999999999866643 1 110 0001124555665556663 34555666544 33444 8
Q ss_pred CCEEE-EccCCcccccHHHHHHHHHHcCCcEEEEEc--CCCC------hHHHHHhhhhcce--E--EEEeecCCCC----
Q 025927 139 ADIVS-VHCEQSSTIHLHRTLNQIKDLGAKAGVVLN--PATS------LSAIECVLDVVDL--V--LIMSVNPGFG---- 201 (246)
Q Consensus 139 ad~It-~H~E~~~~~~~~~~i~~Ik~~G~k~GlAln--P~Tp------ve~l~~~l~~vD~--V--LvMsV~PGfg---- 201 (246)
+++|- +-.| .....+++..++++|+.+-+... .++| ++.++..++.+.- | -=+-++||++
T Consensus 92 ~~iINsIs~~---~~~~~~~~~l~~~~g~~vv~m~~~~~g~P~t~~~~~~~l~~~v~~a~~~GI~~~~IilDPgi~~~~~ 168 (261)
T PRK07535 92 PPLINSVSAE---GEKLEVVLPLVKKYNAPVVALTMDDTGIPKDAEDRLAVAKELVEKADEYGIPPEDIYIDPLVLPLSA 168 (261)
T ss_pred CCEEEeCCCC---CccCHHHHHHHHHhCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHcCCCHhHEEEeCCCCcccC
Confidence 88653 2232 11234678888999987765443 3344 3444444432211 1 1134688776
Q ss_pred CCcccHHHHHHHHHHHHHH
Q 025927 202 GQSFIESQVKKISDLRRMC 220 (246)
Q Consensus 202 GQ~F~~~~l~KI~~lr~l~ 220 (246)
++.-.-++++.++.+++++
T Consensus 169 ~~~~~~~~l~~i~~l~~~~ 187 (261)
T PRK07535 169 AQDAGPEVLETIRRIKELY 187 (261)
T ss_pred ChHHHHHHHHHHHHHHHhC
Confidence 3334455677777766654
No 139
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=92.15 E-value=8.7 Score=36.26 Aligned_cols=146 Identities=16% Similarity=0.215 Sum_probs=91.0
Q ss_pred ChhhHHHHHHHHHHcCCCEEEeeeccC----cccCCCC-C-CHHHHhhccc-CCCCCeeEEEec--cCcccchHHHHhcC
Q 025927 68 NFAKLGEQVKAVELAGCDWIHVDVMDG----RFVPNIT-I-GPLVVDALRP-VTDLPLDVHLMI--VEPEQRVPDFIKAG 138 (246)
Q Consensus 68 D~~~l~~~i~~l~~~g~d~lHiDIMDG----~FVpN~t-f-gp~~I~~ir~-~t~~plDvHLMV--~~P~~~i~~~~~ag 138 (246)
......+-++.|.++|++.+=+=--|| .|+.+++ + ..+.++++++ ..+..+-+.+.- .+ ...++...++|
T Consensus 23 ~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~-~~dl~~a~~~g 101 (337)
T PRK08195 23 TLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVVKQAKIAALLLPGIGT-VDDLKMAYDAG 101 (337)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhCCCCEEEEEeccCccc-HHHHHHHHHcC
Confidence 345566778899999999875532232 4432321 1 3466777754 334444444421 12 35577888899
Q ss_pred CCE--EEEccCCcccccHHHHHHHHHHcCCcEEEEE--cCCCChHHHHHhhhh-----cceEEEEeecCCCCCCcccHHH
Q 025927 139 ADI--VSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL--NPATSLSAIECVLDV-----VDLVLIMSVNPGFGGQSFIESQ 209 (246)
Q Consensus 139 ad~--It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAl--nP~Tpve~l~~~l~~-----vD~VLvMsV~PGfgGQ~F~~~~ 209 (246)
++. |.+|... .+...+.++++|+.|+++-+.+ .+.++.+.+..++.. +|.|-+. .-.|...-.++
T Consensus 102 vd~iri~~~~~e--~~~~~~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i~i~----DT~G~~~P~~v 175 (337)
T PRK08195 102 VRVVRVATHCTE--ADVSEQHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQCVYVV----DSAGALLPEDV 175 (337)
T ss_pred CCEEEEEEecch--HHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCEEEeC----CCCCCCCHHHH
Confidence 996 6688763 3456789999999999875544 445666777666543 5544332 34566666777
Q ss_pred HHHHHHHHHHH
Q 025927 210 VKKISDLRRMC 220 (246)
Q Consensus 210 l~KI~~lr~l~ 220 (246)
.+.++.+|+.+
T Consensus 176 ~~~v~~l~~~l 186 (337)
T PRK08195 176 RDRVRALRAAL 186 (337)
T ss_pred HHHHHHHHHhc
Confidence 77788877765
No 140
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=92.02 E-value=1.2 Score=36.48 Aligned_cols=129 Identities=18% Similarity=0.234 Sum_probs=72.2
Q ss_pred cChhhHHHHHHHHHHcCCCEE--E-eeeccCcccCCCCCC----HHHHhhcccCCCC--CeeEEEecc---CcccchHHH
Q 025927 67 ANFAKLGEQVKAVELAGCDWI--H-VDVMDGRFVPNITIG----PLVVDALRPVTDL--PLDVHLMIV---EPEQRVPDF 134 (246)
Q Consensus 67 aD~~~l~~~i~~l~~~g~d~l--H-iDIMDG~FVpN~tfg----p~~I~~ir~~t~~--plDvHLMV~---~P~~~i~~~ 134 (246)
.+...+.++++.+.+.|.... . +=+..|.. .... .++++.+++.... .+.+++-+. --..+++.+
T Consensus 30 ~~~e~i~~~~~~~~~~~~~~~~~~~i~~~gg~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tn~~~~~~~~~~~l 106 (216)
T smart00729 30 RYLEALVREIELLAEKGEKEILVGTVFIGGGTP---TLLSPEQLEELLEAIREILGLADDVEITIETRPGTLTEELLEAL 106 (216)
T ss_pred HHHHHHHHHHHHHHhcccCCcceeEEEECCCCC---CCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCcccCCHHHHHHH
Confidence 445566677777755554332 2 22224433 2222 2366666664322 345555443 113678889
Q ss_pred HhcCCCEEEEccCCcc------------cccHHHHHHHHHHcC-CcEEEEEcCC---CChHHHHHhhh-----hcceEEE
Q 025927 135 IKAGADIVSVHCEQSS------------TIHLHRTLNQIKDLG-AKAGVVLNPA---TSLSAIECVLD-----VVDLVLI 193 (246)
Q Consensus 135 ~~agad~It~H~E~~~------------~~~~~~~i~~Ik~~G-~k~GlAlnP~---Tpve~l~~~l~-----~vD~VLv 193 (246)
.++|.+.+.+.+|+.. ..+..+.++.+++.| .++.+.+-++ ...+.+..+++ .++.|.+
T Consensus 107 ~~~~~~~i~isl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~ 186 (216)
T smart00729 107 KEAGVNRVSLGVQSGSDEVLKAINRGHTVEDVLEAVEKLREAGPIKVSTDLIVGLPGETEEDFEETLKLLKELGPDRVSI 186 (216)
T ss_pred HHcCCCeEEEecccCCHHHHHHhcCCCCHHHHHHHHHHHHHhCCcceEEeEEecCCCCCHHHHHHHHHHHHHcCCCeEEe
Confidence 9999999999998531 123456777788888 5655544443 44566655554 2555555
Q ss_pred EeecC
Q 025927 194 MSVNP 198 (246)
Q Consensus 194 MsV~P 198 (246)
+...|
T Consensus 187 ~~~~p 191 (216)
T smart00729 187 FPLSP 191 (216)
T ss_pred eeeee
Confidence 55443
No 141
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=92.02 E-value=3.9 Score=36.25 Aligned_cols=130 Identities=9% Similarity=0.158 Sum_probs=82.0
Q ss_pred hHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccC---CCCCeeEEEec------cCccc----------ch
Q 025927 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV---TDLPLDVHLMI------VEPEQ----------RV 131 (246)
Q Consensus 71 ~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~---t~~plDvHLMV------~~P~~----------~i 131 (246)
.+++.++.+.+.|.+.+.+....-++.....+.+..++++++. .++++-+|.-. .+|.. .+
T Consensus 11 ~~~~~~~~~~~~G~~~vel~~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~ls~h~p~~~nl~s~d~~~r~~~~~~l~~~i 90 (273)
T smart00518 11 GLYKAFIEAVDIGARSFQLFLGNPRSWKGVRLSEETAEKFKEALKENNIDVSVHAPYLINLASPDKEKVEKSIERLIDEI 90 (273)
T ss_pred cHhHHHHHHHHcCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCceecCCCCCHHHHHHHHHHHHHHH
Confidence 4778999999999999999999988865456777777777553 57788888522 23321 23
Q ss_pred HHHHhcCCCEEEEccCCcc----cccHHHHHHHHHH-----cCCcEEEEEcCC------CChHHHHHhhhhcceE--EEE
Q 025927 132 PDFIKAGADIVSVHCEQSS----TIHLHRTLNQIKD-----LGAKAGVVLNPA------TSLSAIECVLDVVDLV--LIM 194 (246)
Q Consensus 132 ~~~~~agad~It~H~E~~~----~~~~~~~i~~Ik~-----~G~k~GlAlnP~------Tpve~l~~~l~~vD~V--LvM 194 (246)
+...+.|++.|.+|.-... .....++.+.+++ .|++.+|=--|. ++++.+..+++.++-. +-.
T Consensus 91 ~~A~~lGa~~vv~h~g~~~~~~~e~~~~~~~~~l~~l~~~~~gv~l~lEn~~~~~~~~~~~~~~~~~ll~~v~~~~~~g~ 170 (273)
T smart00518 91 KRCEELGIKALVFHPGSYLKQSKEEALNRIIESLNEVIDETKGVVILLETTAGKGSQIGSTFEDLKEIIDLIKELDRIGV 170 (273)
T ss_pred HHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHHHHhccCCcEEEEeccCCCCCccCCCHHHHHHHHHhcCCCCCeEE
Confidence 3445579999999974210 1123333334333 333333221111 3557788888888752 667
Q ss_pred eecCCC
Q 025927 195 SVNPGF 200 (246)
Q Consensus 195 sV~PGf 200 (246)
+.++|-
T Consensus 171 ~lD~gH 176 (273)
T smart00518 171 CIDTCH 176 (273)
T ss_pred EEEccc
Confidence 788874
No 142
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=91.97 E-value=0.79 Score=44.68 Aligned_cols=132 Identities=17% Similarity=0.250 Sum_probs=85.0
Q ss_pred cccChhhHHHHHHHHHHcCCCEEEe---eeccCcccC-CC--CCCHHHHhhcccCCCCCeeEEEeccCccc----chHHH
Q 025927 65 LSANFAKLGEQVKAVELAGCDWIHV---DVMDGRFVP-NI--TIGPLVVDALRPVTDLPLDVHLMIVEPEQ----RVPDF 134 (246)
Q Consensus 65 l~aD~~~l~~~i~~l~~~g~d~lHi---DIMDG~FVp-N~--tfgp~~I~~ir~~t~~plDvHLMV~~P~~----~i~~~ 134 (246)
-+-++..+-+|++.+.+.|++.+.+ |+.. |.. +. .| .+.++.|.++.. .+.+.+++.+|.. .++.+
T Consensus 176 rsr~~e~Vv~Ei~~l~~~G~~ei~l~~~~~~~--y~d~~~~~~l-~~Ll~~l~~~~~-~~rir~~~~~p~~l~~ell~~~ 251 (445)
T PRK14340 176 RSHPFASVLDEVRALAEAGYREITLLGQNVNS--YSDPEAGADF-AGLLDAVSRAAP-EMRIRFTTSHPKDISESLVRTI 251 (445)
T ss_pred cCCCHHHHHHHHHHHHHCCCeEEEEeecccch--hhccCCCchH-HHHHHHHhhcCC-CcEEEEccCChhhcCHHHHHHH
Confidence 3566778889999999999988877 4332 221 11 12 355666655422 4578888888854 56666
Q ss_pred Hhc--CCCEEEEccCCcc------------cccHHHHHHHHHHc--CCcEEE--EEc-CCCChHHHHHhhhh-----cce
Q 025927 135 IKA--GADIVSVHCEQSS------------TIHLHRTLNQIKDL--GAKAGV--VLN-PATSLSAIECVLDV-----VDL 190 (246)
Q Consensus 135 ~~a--gad~It~H~E~~~------------~~~~~~~i~~Ik~~--G~k~Gl--Aln-P~Tpve~l~~~l~~-----vD~ 190 (246)
+++ |+.++.+-+|+.+ ..+..+.++.+|+. |+.++. .+. |+-..++++..++. .|.
T Consensus 252 ~~~~~g~~~l~iglQSgsd~vLk~m~R~~t~~~~~~~v~~lr~~~pgi~i~td~IvGfPgET~edf~~tl~~~~~~~~~~ 331 (445)
T PRK14340 252 AARPNICNHIHLPVQSGSSRMLRRMNRGHTIEEYLEKIALIRSAIPGVTLSTDLIAGFCGETEEDHRATLSLMEEVRFDS 331 (445)
T ss_pred HhCCCCCCeEEECCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEeccEEEECCCCCHHHHHHHHHHHHhcCCCE
Confidence 664 7899999999752 22356788888888 776652 222 77777776665543 565
Q ss_pred EEE--EeecCCC
Q 025927 191 VLI--MSVNPGF 200 (246)
Q Consensus 191 VLv--MsV~PGf 200 (246)
+-+ .+..||-
T Consensus 332 ~~~f~~sp~pGT 343 (445)
T PRK14340 332 AFMFYYSVRPGT 343 (445)
T ss_pred EeeEEecCCCCC
Confidence 544 5666773
No 143
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=91.94 E-value=3.4 Score=37.68 Aligned_cols=159 Identities=17% Similarity=0.209 Sum_probs=108.2
Q ss_pred HHHHHHHHcCCCEEEeeeccCcccCC-CCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEEEccCCc---
Q 025927 74 EQVKAVELAGCDWIHVDVMDGRFVPN-ITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS--- 149 (246)
Q Consensus 74 ~~i~~l~~~g~d~lHiDIMDG~FVpN-~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It~H~E~~--- 149 (246)
+-....+++|+|.|=+=.- |. =-+..+.+..|++....+ ..|-..--+.+++...+..++++|+=+|.-
T Consensus 28 ~aA~~a~~aGAdgITvHlR-----eDrRHI~d~Dv~~L~~~~~~~--lNlE~a~~~em~~ia~~~kP~~vtLVPE~r~E~ 100 (239)
T PRK05265 28 RAALIAEQAGADGITVHLR-----EDRRHIRDRDVRLLRETLKTE--LNLEMAATEEMLDIALEVKPHQVTLVPEKREEL 100 (239)
T ss_pred HHHHHHHHcCCCEEEecCC-----CCcccCCHHHHHHHHHhcCCC--EEeccCCCHHHHHHHHHCCCCEEEECCCCCCCc
Confidence 4456678889998755332 22 245567888888865544 445444445688888889999999999841
Q ss_pred cc----------ccHHHHHHHHHHcCCcEEEEEcCCCCh-HHHHHhhhhcceEEEEeecCC--CCCCcccHHHHHHHHHH
Q 025927 150 ST----------IHLHRTLNQIKDLGAKAGVVLNPATSL-SAIECVLDVVDLVLIMSVNPG--FGGQSFIESQVKKISDL 216 (246)
Q Consensus 150 ~~----------~~~~~~i~~Ik~~G~k~GlAlnP~Tpv-e~l~~~l~~vD~VLvMsV~PG--fgGQ~F~~~~l~KI~~l 216 (246)
++ ..+..+++.+|+.|+++.|-+.|+..- +.-..+ -+|.|-+-|-.=. |+.+ ...-+++++..
T Consensus 101 TTegGldv~~~~~~l~~~i~~L~~~gIrVSLFidP~~~qi~~A~~~--GAd~VELhTG~yA~a~~~~--~~~el~~~~~a 176 (239)
T PRK05265 101 TTEGGLDVAGQFDKLKPAIARLKDAGIRVSLFIDPDPEQIEAAAEV--GADRIELHTGPYADAKTEA--EAAELERIAKA 176 (239)
T ss_pred cCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHh--CcCEEEEechhhhcCCCcc--hHHHHHHHHHH
Confidence 11 136788999999999999999886332 333332 5888888764321 2222 24458888888
Q ss_pred HHHHHhcCCCCeEEEeCCCChhhhhhccc
Q 025927 217 RRMCLEKGVNPWIEVDGGVGPKNAYKVPN 245 (246)
Q Consensus 217 r~l~~~~~~~~~I~VDGGI~~e~i~~l~~ 245 (246)
-++..+.|+ .+..=.|+|.+|++.+.+
T Consensus 177 a~~a~~lGL--~VnAGHgLny~Nv~~i~~ 203 (239)
T PRK05265 177 AKLAASLGL--GVNAGHGLNYHNVKPIAA 203 (239)
T ss_pred HHHHHHcCC--EEecCCCCCHHhHHHHhh
Confidence 888776654 577788999999987654
No 144
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=91.85 E-value=2.2 Score=38.75 Aligned_cols=126 Identities=18% Similarity=0.156 Sum_probs=80.4
Q ss_pred eeecccChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCC-CCCeeEEEeccCcccchHHHHhcCCC
Q 025927 62 PSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVT-DLPLDVHLMIVEPEQRVPDFIKAGAD 140 (246)
Q Consensus 62 PSIl~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t-~~plDvHLMV~~P~~~i~~~~~agad 140 (246)
.-+++-|+--..-|++....+|+|.+|++..+- + +..++++-+.. .+-+++=.-|.+.+.. +...++|+|
T Consensus 112 iPvl~kdfi~~~~qi~~a~~~GAD~VlLi~~~l---~-----~~~l~~li~~a~~lGl~~lvevh~~~E~-~~A~~~gad 182 (260)
T PRK00278 112 LPVLRKDFIIDPYQIYEARAAGADAILLIVAAL---D-----DEQLKELLDYAHSLGLDVLVEVHDEEEL-ERALKLGAP 182 (260)
T ss_pred CCEEeeeecCCHHHHHHHHHcCCCEEEEEeccC---C-----HHHHHHHHHHHHHcCCeEEEEeCCHHHH-HHHHHcCCC
Confidence 345668888778899999999999999999882 2 23444442221 1222322223355543 456788999
Q ss_pred EEEEccCCcc--cccHHHHHHHHHHc-CCcEEEEEcCCCChHHHHHhhhh-cceEEEEee
Q 025927 141 IVSVHCEQSS--TIHLHRTLNQIKDL-GAKAGVVLNPATSLSAIECVLDV-VDLVLIMSV 196 (246)
Q Consensus 141 ~It~H~E~~~--~~~~~~~i~~Ik~~-G~k~GlAlnP~Tpve~l~~~l~~-vD~VLvMsV 196 (246)
+|.+|-.... ..++..+.+.++.. +-.+-++..--...+.+..++.. +|.|+|.+-
T Consensus 183 iIgin~rdl~~~~~d~~~~~~l~~~~p~~~~vIaegGI~t~ed~~~~~~~Gad~vlVGsa 242 (260)
T PRK00278 183 LIGINNRNLKTFEVDLETTERLAPLIPSDRLVVSESGIFTPEDLKRLAKAGADAVLVGES 242 (260)
T ss_pred EEEECCCCcccccCCHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHHcCCCEEEECHH
Confidence 9999964221 22444444443332 22366777777788999998886 899998664
No 145
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=91.73 E-value=2.7 Score=37.30 Aligned_cols=160 Identities=14% Similarity=0.074 Sum_probs=91.1
Q ss_pred cEEeeeecccChhhHHHHHHHHHHcC-CCEEEee---eccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHH
Q 025927 58 IIVSPSILSANFAKLGEQVKAVELAG-CDWIHVD---VMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPD 133 (246)
Q Consensus 58 ~~IsPSIl~aD~~~l~~~i~~l~~~g-~d~lHiD---IMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~ 133 (246)
..|+|+.. +...+.+.++++-+.| ++++++= .-+..| -...+++++.+. ...+.|.+.+. ++.
T Consensus 16 y~It~~~~--~~~~~~~~l~~al~~G~v~~vQlR~K~l~~~~~-------~~~a~~l~~l~~-~~gv~liINd~---~dl 82 (221)
T PRK06512 16 VLVAPPIA--DGAELAKLLRAALQGGDVASVILPQYGLDEATF-------QKQAEKLVPVIQ-EAGAAALIAGD---SRI 82 (221)
T ss_pred EEEeCCCc--ccccHHHHHHHHHcCCCccEEEEeCCCCCHHHH-------HHHHHHHHHHHH-HhCCEEEEeCH---HHH
Confidence 45677644 3356778899998999 7999993 322222 123444444332 22466777763 555
Q ss_pred HHhcCCCEEEEccCCcccccHHHHHHHHH-HcC--CcEEEEEcCCCChHHHHHhh-hhcceEEEEeecCCCCCCcccHHH
Q 025927 134 FIKAGADIVSVHCEQSSTIHLHRTLNQIK-DLG--AKAGVVLNPATSLSAIECVL-DVVDLVLIMSVNPGFGGQSFIESQ 209 (246)
Q Consensus 134 ~~~agad~It~H~E~~~~~~~~~~i~~Ik-~~G--~k~GlAlnP~Tpve~l~~~l-~~vD~VLvMsV~PGfgGQ~F~~~~ 209 (246)
-.+.|+|-|++-.+. ..+ ...| ..| .-+|+. ..++.+....-. .-+|||.+=.|.+-.. ...-|..
T Consensus 83 A~~~~adGVHLg~~d---~~~----~~~r~~~~~~~iiG~s--~~~s~~~a~~A~~~gaDYv~~Gpv~t~tK-~~~~p~g 152 (221)
T PRK06512 83 AGRVKADGLHIEGNL---AAL----AEAIEKHAPKMIVGFG--NLRDRHGAMEIGELRPDYLFFGKLGADNK-PEAHPRN 152 (221)
T ss_pred HHHhCCCEEEECccc---cCH----HHHHHhcCCCCEEEec--CCCCHHHHHHhhhcCCCEEEECCCCCCCC-CCCCCCC
Confidence 677899977665431 122 2222 333 334443 345566554432 3589998866643211 1233444
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEeCCCChhhhhhccc
Q 025927 210 VKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVPN 245 (246)
Q Consensus 210 l~KI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~l~~ 245 (246)
++.++++++.. +.-+..=||||.+|+.++.+
T Consensus 153 l~~l~~~~~~~-----~iPvvAIGGI~~~n~~~~~~ 183 (221)
T PRK06512 153 LSLAEWWAEMI-----EIPCIVQAGSDLASAVEVAE 183 (221)
T ss_pred hHHHHHHHHhC-----CCCEEEEeCCCHHHHHHHHH
Confidence 55555554432 34577789999999998754
No 146
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=91.65 E-value=7.2 Score=37.40 Aligned_cols=103 Identities=16% Similarity=0.267 Sum_probs=64.5
Q ss_pred cchHHHHhcCCCEEEEccCCcc------------cccHHHHHHHHHHcCCc-EEEEEc---CCCChHHHHHhhhh-----
Q 025927 129 QRVPDFIKAGADIVSVHCEQSS------------TIHLHRTLNQIKDLGAK-AGVVLN---PATSLSAIECVLDV----- 187 (246)
Q Consensus 129 ~~i~~~~~agad~It~H~E~~~------------~~~~~~~i~~Ik~~G~k-~GlAln---P~Tpve~l~~~l~~----- 187 (246)
..++.+.++|+++|++=+|+.. .++..+.++.+|+.|+. +++-+- |+...+.++.-+..
T Consensus 116 e~l~~l~~~GvnrislGvQS~~d~~L~~l~R~~~~~~~~~ai~~l~~~G~~~v~~dlI~GlPgqt~e~~~~tl~~~~~l~ 195 (400)
T PRK07379 116 EQLQGYRSLGVNRVSLGVQAFQDELLALCGRSHRVKDIFAAVDLIHQAGIENFSLDLISGLPHQTLEDWQASLEAAIALN 195 (400)
T ss_pred HHHHHHHHCCCCEEEEEcccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHcCC
Confidence 4678888999999999999751 22366788889999988 665444 55555554443332
Q ss_pred cceEEE--EeecCCC--C-----CCc---ccHHHHHHHHHHHHHHHhcCCCCeEEEe
Q 025927 188 VDLVLI--MSVNPGF--G-----GQS---FIESQVKKISDLRRMCLEKGVNPWIEVD 232 (246)
Q Consensus 188 vD~VLv--MsV~PGf--g-----GQ~---F~~~~l~KI~~lr~l~~~~~~~~~I~VD 232 (246)
.|.|-+ +++.||- . |+. =.+...+-...+++.+.++|+. ..+++
T Consensus 196 p~~is~y~L~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~Gy~-~yeis 251 (400)
T PRK07379 196 PTHLSCYDLVLEPGTAFGKQYQPGKAPLPSDETTAAMYRLAQEILTQAGYE-HYEIS 251 (400)
T ss_pred CCEEEEecceecCCchhHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHcCCc-eeeee
Confidence 555554 6777872 1 221 1223333445567888888875 45553
No 147
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=91.63 E-value=0.83 Score=47.51 Aligned_cols=170 Identities=16% Similarity=0.206 Sum_probs=96.6
Q ss_pred cEEeeeecccChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhc
Q 025927 58 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKA 137 (246)
Q Consensus 58 ~~IsPSIl~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~a 137 (246)
..|+++..+.+...+.+.++++-++|++++++-.-|. +.-.+ ...++++++.+. ...+.|+|.+. ++.-.++
T Consensus 7 y~It~~~~~~~~~~~~~~l~~~l~~g~~~iqlR~K~~---~~~~~-~~~a~~l~~l~~-~~~~~liind~---~~la~~~ 78 (755)
T PRK09517 7 YLVTDPVLGGGPEKVAGIVDSAISGGVSVVQLRDKNA---GVEDV-RAAAKELKELCD-ARGVALVVNDR---LDVAVEL 78 (755)
T ss_pred EEEECCccccCcccHHHHHHHHHhcCCCEEEEeCCCC---CHHHH-HHHHHHHHHHHH-HhCCeEEEeCh---HHHHHHc
Confidence 4577777766656677888888889999999953332 11001 123444444332 23577888774 5555678
Q ss_pred CCCEEEEccCCcccccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhh---h-----hcceEEEEeecCCCCCCcc-cHH
Q 025927 138 GADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVL---D-----VVDLVLIMSVNPGFGGQSF-IES 208 (246)
Q Consensus 138 gad~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l---~-----~vD~VLvMsV~PGfgGQ~F-~~~ 208 (246)
|+| +|+... +-+.+..+++...+..+|++.+ ..+.++... . .+|+|.+=.|-|=-.-..- -+-
T Consensus 79 ~~d---VHlg~~--dl~~~~~r~~~~~~~~iG~S~h---~~~e~~~~~~~~~~~g~~gaDYi~~Gpvf~T~tK~~~~~~l 150 (755)
T PRK09517 79 GLH---VHIGQG--DTPYTQARRLLPAHLELGLTIE---TLDQLEAVIAQCAETGVALPDVIGIGPVASTATKPDAPPAL 150 (755)
T ss_pred CCC---eecCCC--cCCHHHHHHhcCCCCEEEEeCC---CHHHHHHHHhhhccCCCCCCCEEEECCccccCCCCCCCCCC
Confidence 999 787631 1112233332223455677544 344443322 1 2899988766542111111 112
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEeCCCChhhhhhccc
Q 025927 209 QVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVPN 245 (246)
Q Consensus 209 ~l~KI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~l~~ 245 (246)
-++.++++++..++. ++-+.+=|||+.+|++++.+
T Consensus 151 G~~~l~~~~~~~~~~--~iPv~AiGGI~~~~~~~~~~ 185 (755)
T PRK09517 151 GVDGIAEIAAVAQDH--GIASVAIGGVGLRNAAELAA 185 (755)
T ss_pred CHHHHHHHHHhcCcC--CCCEEEECCCCHHHHHHHHH
Confidence 345566666665321 24577889999999998764
No 148
>PRK04302 triosephosphate isomerase; Provisional
Probab=91.48 E-value=5.4 Score=35.00 Aligned_cols=133 Identities=14% Similarity=0.113 Sum_probs=69.5
Q ss_pred HHHHhhcccCCCCCeeEEEecc------CcccchHHHHhcCCCEEE-EccCCc-ccccHHHHHHHHHHcCCcEEEEEcCC
Q 025927 104 PLVVDALRPVTDLPLDVHLMIV------EPEQRVPDFIKAGADIVS-VHCEQS-STIHLHRTLNQIKDLGAKAGVVLNPA 175 (246)
Q Consensus 104 p~~I~~ir~~t~~plDvHLMV~------~P~~~i~~~~~agad~It-~H~E~~-~~~~~~~~i~~Ik~~G~k~GlAlnP~ 175 (246)
...++.+++.+++++-+.=+-. ..+..++.+.++|+|.+. -|.|-- ...+..+.++.++++|+.+=+.. .
T Consensus 45 ~~~l~~v~~~~~i~v~aq~~~~~~~G~~tg~~~~~~l~~~G~~~vii~~ser~~~~~e~~~~v~~a~~~Gl~~I~~v--~ 122 (223)
T PRK04302 45 ALDIRRVAEEVDIPVYAQHVDPVEPGSHTGHILPEAVKDAGAVGTLINHSERRLTLADIEAVVERAKKLGLESVVCV--N 122 (223)
T ss_pred HHHHHHHHHhcCCeEEeccCCCCCCCCchhhhHHHHHHHcCCCEEEEeccccccCHHHHHHHHHHHHHCCCeEEEEc--C
Confidence 3446666665565544321111 122357788999999655 454531 12345678888899998876433 2
Q ss_pred CChHHHHHhhh-hcceEEEEeecC-CCC-C-CcccHHHHHHHHHHHHHHHhcCCCCeEEEeCCCChh-hhhh
Q 025927 176 TSLSAIECVLD-VVDLVLIMSVNP-GFG-G-QSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPK-NAYK 242 (246)
Q Consensus 176 Tpve~l~~~l~-~vD~VLvMsV~P-Gfg-G-Q~F~~~~l~KI~~lr~l~~~~~~~~~I~VDGGI~~e-~i~~ 242 (246)
+ .+.++.+.. ..|+|-++.+.- |.+ + +.-.|+.++ ++.+.+.+...+..|.+-|||+.. .+..
T Consensus 123 ~-~~~~~~~~~~~~~~I~~~p~~~igt~~~~~~~~~~~i~---~~~~~ir~~~~~~pvi~GggI~~~e~~~~ 190 (223)
T PRK04302 123 N-PETSAAAAALGPDYVAVEPPELIGTGIPVSKAKPEVVE---DAVEAVKKVNPDVKVLCGAGISTGEDVKA 190 (223)
T ss_pred C-HHHHHHHhcCCCCEEEEeCccccccCCCCCcCCHHHHH---HHHHHHHhccCCCEEEEECCCCCHHHHHH
Confidence 3 455554433 256666665431 322 1 112344333 322333322224578889999554 4443
No 149
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=91.36 E-value=5.6 Score=36.22 Aligned_cols=161 Identities=14% Similarity=0.131 Sum_probs=107.3
Q ss_pred HHHHHHHHcCCCEEEeeeccCcccCC-CCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEEEccCCc---
Q 025927 74 EQVKAVELAGCDWIHVDVMDGRFVPN-ITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS--- 149 (246)
Q Consensus 74 ~~i~~l~~~g~d~lHiDIMDG~FVpN-~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It~H~E~~--- 149 (246)
+-....+++|+|.|=+=.- |. =-+-...+..|++....+ ..|-..--+.+++...+..++++|+=+|.-
T Consensus 25 ~aA~~a~~aGAdgITvHlR-----eDrRHI~d~Dv~~l~~~~~~~--lNlE~a~~~emi~ia~~vkP~~vtLVPEkr~El 97 (237)
T TIGR00559 25 RAALIAEQAGADGITVHLR-----EDRRHIQDRDVYDLKEALTTP--FNIEMAPTEEMIRIAEEIKPEQVTLVPEARDEV 97 (237)
T ss_pred HHHHHHHHcCCCEEEecCC-----CCcCcCCHHHHHHHHHHcCCC--EEeccCCCHHHHHHHHHcCCCEEEECCCCCCCc
Confidence 4455667889998755322 22 244566788888865544 445454455778877888999999999841
Q ss_pred cc----------ccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhh-hcceEEEEeecCCC-CCCcccHHHHHHHHHHH
Q 025927 150 ST----------IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGF-GGQSFIESQVKKISDLR 217 (246)
Q Consensus 150 ~~----------~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~-~vD~VLvMsV~PGf-gGQ~F~~~~l~KI~~lr 217 (246)
++ ..+..+++.+|+.|+++.|-+.|+ .+.++.-.. -+|.|-+-|-.=.- -++.-...-++|++..-
T Consensus 98 TTegGldv~~~~~~l~~~i~~l~~~gI~VSLFiDP~--~~qi~~A~~~GAd~VELhTG~YA~a~~~~~~~~el~~i~~aa 175 (237)
T TIGR00559 98 TTEGGLDVARLKDKLCELVKRFHAAGIEVSLFIDAD--KDQISAAAEVGADRIEIHTGPYANAYNKKEMAEELQRIVKAS 175 (237)
T ss_pred cCCcCchhhhCHHHHHHHHHHHHHCCCEEEEEeCCC--HHHHHHHHHhCcCEEEEechhhhcCCCchhHHHHHHHHHHHH
Confidence 11 126788999999999999999998 344433222 48998887643110 02222233478888877
Q ss_pred HHHHhcCCCCeEEEeCCCChhhhhhccc
Q 025927 218 RMCLEKGVNPWIEVDGGVGPKNAYKVPN 245 (246)
Q Consensus 218 ~l~~~~~~~~~I~VDGGI~~e~i~~l~~ 245 (246)
++..+.| ..+..=.|+|.+|++.+.+
T Consensus 176 ~~A~~lG--L~VnAGHgLny~Nv~~i~~ 201 (237)
T TIGR00559 176 VHAHSLG--LKVNAGHGLNYHNVKYFAE 201 (237)
T ss_pred HHHHHcC--CEEecCCCCCHHhHHHHHh
Confidence 7766665 4677788999999987754
No 150
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=91.27 E-value=1 Score=43.35 Aligned_cols=92 Identities=24% Similarity=0.325 Sum_probs=59.6
Q ss_pred cCcccchHHHHhcCCCEEEE---ccCCcc----------------ccc-HHHHHHHHHHcCCcEEEEEcCCCChHHHHHh
Q 025927 125 VEPEQRVPDFIKAGADIVSV---HCEQSS----------------TIH-LHRTLNQIKDLGAKAGVVLNPATSLSAIECV 184 (246)
Q Consensus 125 ~~P~~~i~~~~~agad~It~---H~E~~~----------------~~~-~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~ 184 (246)
-||+.|++.+.++|+.++.+ |-+.++ ..| +.++.+.+|+.|+|+|+-.++ .+--
T Consensus 81 fD~~~Wa~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~Y~S~---~DW~--- 154 (384)
T smart00812 81 FDPEEWADLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGPKRDLVGELADAVRKRGLKFGLYHSL---FDWF--- 154 (384)
T ss_pred CCHHHHHHHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCCCcchHHHHHHHHHHcCCeEEEEcCH---HHhC---
Confidence 38999999999999998766 544220 112 567888899999999997765 2111
Q ss_pred hhhcceEEEEeecCCCCC-----------CcccHHHHHHHHHHHHHHHhcCCCCeEEEeCCC
Q 025927 185 LDVVDLVLIMSVNPGFGG-----------QSFIESQVKKISDLRRMCLEKGVNPWIEVDGGV 235 (246)
Q Consensus 185 l~~vD~VLvMsV~PGfgG-----------Q~F~~~~l~KI~~lr~l~~~~~~~~~I~VDGGI 235 (246)
+|.|+. ..+....-+=..++++++..-|. -.|..||+.
T Consensus 155 ------------~p~y~~~~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Ygp-d~lWfD~~~ 203 (384)
T smart00812 155 ------------NPLYAGPTSSDEDPDNWPRFQEFVDDWLPQLRELVTRYKP-DLLWFDGGW 203 (384)
T ss_pred ------------CCccccccccccccccchhHHHHHHHHHHHHHHHHhcCCC-ceEEEeCCC
Confidence 232221 12333331113577788877666 579999986
No 151
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=91.13 E-value=9.2 Score=33.11 Aligned_cols=118 Identities=14% Similarity=0.108 Sum_probs=71.6
Q ss_pred hhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEEEcc-CC
Q 025927 70 AKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHC-EQ 148 (246)
Q Consensus 70 ~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It~H~-E~ 148 (246)
....+.++.+.++|+|.+|+- |+ ..+++++++++. ++++-+ .+ .+...++.+.+.|+|+|.+|. +.
T Consensus 67 ~~~~~~~~~~~~~g~d~v~l~--~~-------~~~~~~~~~~~~-~i~~i~--~v-~~~~~~~~~~~~gad~i~~~~~~~ 133 (236)
T cd04730 67 PDFEALLEVALEEGVPVVSFS--FG-------PPAEVVERLKAA-GIKVIP--TV-TSVEEARKAEAAGADALVAQGAEA 133 (236)
T ss_pred cCHHHHHHHHHhCCCCEEEEc--CC-------CCHHHHHHHHHc-CCEEEE--eC-CCHHHHHHHHHcCCCEEEEeCcCC
Confidence 356678889999999999973 22 236778888763 444321 22 344556778889999999864 11
Q ss_pred cc---c--ccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhhh-cceEEEEeecCCC
Q 025927 149 SS---T--IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV-VDLVLIMSVNPGF 200 (246)
Q Consensus 149 ~~---~--~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~~-vD~VLvMsV~PGf 200 (246)
.. . .....+++.+++.--..=++..-=++.+.+.+++.. +|.|.+.|--=..
T Consensus 134 ~G~~~~~~~~~~~~i~~i~~~~~~Pvi~~GGI~~~~~v~~~l~~GadgV~vgS~l~~~ 191 (236)
T cd04730 134 GGHRGTFDIGTFALVPEVRDAVDIPVIAAGGIADGRGIAAALALGADGVQMGTRFLAT 191 (236)
T ss_pred CCCCCccccCHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHcCCcEEEEchhhhcC
Confidence 00 0 123457777776432232333323445777776654 9999998654333
No 152
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=91.12 E-value=5.9 Score=39.41 Aligned_cols=163 Identities=18% Similarity=0.251 Sum_probs=90.5
Q ss_pred hhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCee--EEEec----c-Cc--ccchHHHHhcCCC
Q 025927 70 AKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLD--VHLMI----V-EP--EQRVPDFIKAGAD 140 (246)
Q Consensus 70 ~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plD--vHLMV----~-~P--~~~i~~~~~agad 140 (246)
..+.+.++.+.+.++.++=+-=-+|.++--++.. ++++. +.+.+.-.| =+|+| . +| ...++.++++|+|
T Consensus 178 ~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~-DIl~~-~~~p~a~~D~~GrL~Vgaavg~~~~~~~~~~~l~~ag~d 255 (495)
T PTZ00314 178 ISLEEANEVLRESRKGKLPIVNDNGELVALVSRS-DLKKN-RGYPNASLDSNGQLLVGAAISTRPEDIERAAALIEAGVD 255 (495)
T ss_pred CCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEeh-Hhhhc-ccCchhhhccCCCEEEEEEECCCHHHHHHHHHHHHCCCC
Confidence 4567778888888888775522334444333332 22221 112211111 23333 2 23 3567788999999
Q ss_pred EEEEccCCcccccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhhh-cceEEEEeecCCC--CCCcc----cHHHHHHH
Q 025927 141 IVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV-VDLVLIMSVNPGF--GGQSF----IESQVKKI 213 (246)
Q Consensus 141 ~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~~-vD~VLvMsV~PGf--gGQ~F----~~~~l~KI 213 (246)
.|.+-.-.-......+.+++||+.--.+-|...--...+..+.+++. +|.|-+ ++-||. ..+.. .| .+.-|
T Consensus 256 ~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aGad~I~v-g~g~Gs~~~t~~~~~~g~p-~~~ai 333 (495)
T PTZ00314 256 VLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDAGADGLRI-GMGSGSICITQEVCAVGRP-QASAV 333 (495)
T ss_pred EEEEecCCCCchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHcCCCEEEE-CCcCCcccccchhccCCCC-hHHHH
Confidence 98875421012234568999998632333444444556777777765 898766 777873 11111 12 23445
Q ss_pred HHHHHHHHhcCCCCeEEEeCCCChh
Q 025927 214 SDLRRMCLEKGVNPWIEVDGGVGPK 238 (246)
Q Consensus 214 ~~lr~l~~~~~~~~~I~VDGGI~~e 238 (246)
.++++...+.+ ..+..||||...
T Consensus 334 ~~~~~~~~~~~--v~vIadGGi~~~ 356 (495)
T PTZ00314 334 YHVARYARERG--VPCIADGGIKNS 356 (495)
T ss_pred HHHHHHHhhcC--CeEEecCCCCCH
Confidence 55666655544 578899998643
No 153
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=91.10 E-value=3 Score=40.11 Aligned_cols=155 Identities=15% Similarity=0.150 Sum_probs=89.1
Q ss_pred cccChhhHHHHHHHHHHcCCCEEEe-eeccCcccCCC---CCCHHHHhhcccCCCCCeeEEEeccCcc----cchHHHHh
Q 025927 65 LSANFAKLGEQVKAVELAGCDWIHV-DVMDGRFVPNI---TIGPLVVDALRPVTDLPLDVHLMIVEPE----QRVPDFIK 136 (246)
Q Consensus 65 l~aD~~~l~~~i~~l~~~g~d~lHi-DIMDG~FVpN~---tfgp~~I~~ir~~t~~plDvHLMV~~P~----~~i~~~~~ 136 (246)
-+-++.++-+|++.+.+.|++.+++ |.--+.|-.++ .-=.+.+++|++..+. ..+.+...+|. .+++.+.+
T Consensus 166 r~r~~e~Vv~Ei~~l~~~g~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~~g~-~~i~~~~~~p~~i~~ell~~m~~ 244 (429)
T TIGR00089 166 RSRPPEDILEEVKELVSKGVKEIVLLGQNVGAYGKDLKGETNLADLLRELSKIDGI-ERIRFGSSHPDDVTDDLIELIAE 244 (429)
T ss_pred CCCCHHHHHHHHHHHHHCCCceEEEEeeccccccCCCCCCcCHHHHHHHHhcCCCC-CEEEECCCChhhcCHHHHHHHHh
Confidence 3556778889999999999887764 22222231111 1113456666554332 24667666775 45667777
Q ss_pred cC--CCEEEEccCCcc------------cccHHHHHHHHHHcC--CcEEE--EEc-CCCChHHHHHhhhh-----cceEE
Q 025927 137 AG--ADIVSVHCEQSS------------TIHLHRTLNQIKDLG--AKAGV--VLN-PATSLSAIECVLDV-----VDLVL 192 (246)
Q Consensus 137 ag--ad~It~H~E~~~------------~~~~~~~i~~Ik~~G--~k~Gl--Aln-P~Tpve~l~~~l~~-----vD~VL 192 (246)
+| +..+.+-+|+.+ ..+..+.++.+|+.| +.++. .+. |+-..+.++..++. +|.+.
T Consensus 245 ~~~~~~~l~igiES~s~~vLk~m~R~~~~~~~~~~i~~lr~~~~~i~i~~~~IvG~PgET~ed~~~tl~~i~~~~~~~~~ 324 (429)
T TIGR00089 245 NPKVCKHLHLPVQSGSDRILKRMNRKYTREEYLDIVEKIRAKIPDAAITTDIIVGFPGETEEDFEETLDLVEEVKFDKLH 324 (429)
T ss_pred CCCccCceeeccccCChHHHHhCCCCCCHHHHHHHHHHHHHHCCCCEEEeeEEEECCCCCHHHHHHHHHHHHhcCCCEee
Confidence 74 788888888642 123567888889888 44433 333 66666666554443 56655
Q ss_pred E--EeecCCCC-----CCcccHHHHHHHHHHHHHH
Q 025927 193 I--MSVNPGFG-----GQSFIESQVKKISDLRRMC 220 (246)
Q Consensus 193 v--MsV~PGfg-----GQ~F~~~~l~KI~~lr~l~ 220 (246)
+ ++..||-. +|--.+...+|++.|+++.
T Consensus 325 ~~~~sp~pgT~~~~~~~~v~~~~~~~r~~~l~~~~ 359 (429)
T TIGR00089 325 SFIYSPRPGTPAADMKDQVPEEVKKERLERLIALQ 359 (429)
T ss_pred ccccCCCCCCchhhCCCCCCHHHHHHHHHHHHHHH
Confidence 5 55566732 2222234445555555433
No 154
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=90.97 E-value=1.5 Score=38.25 Aligned_cols=95 Identities=18% Similarity=0.242 Sum_probs=68.2
Q ss_pred hhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccC---CCCCeeEEEeccCcccchHHHHhcCCCEEEEcc
Q 025927 70 AKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV---TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHC 146 (246)
Q Consensus 70 ~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~---t~~plDvHLMV~~P~~~i~~~~~agad~It~H~ 146 (246)
..+++.++.+.+.|+|.+.+. | +..+..+|+. ..+..|..+-|.|+.. +..|.+.|++.+++..
T Consensus 2 ~~~~~~l~~l~~~g~dgi~v~--------~----~g~~~~~k~~~~~~~i~~~~~~nv~N~~s-~~~~~~~G~~~i~ls~ 68 (233)
T PF01136_consen 2 EELEKYLDKLKELGVDGILVS--------N----PGLLELLKELGPDLKIIADYSLNVFNSES-ARFLKELGASRITLSP 68 (233)
T ss_pred hHHHHHHHHHHhCCCCEEEEc--------C----HHHHHHHHHhCCCCcEEEecCccCCCHHH-HHHHHHcCCCEEEECc
Confidence 357889999999999876553 3 4566666664 2456677788888776 6688889999999999
Q ss_pred CCcccccHHHHHHHHHHc-CCcEEEEEcCCCChHHH
Q 025927 147 EQSSTIHLHRTLNQIKDL-GAKAGVVLNPATSLSAI 181 (246)
Q Consensus 147 E~~~~~~~~~~i~~Ik~~-G~k~GlAlnP~Tpve~l 181 (246)
|- ....+-+..+.. ++...+.+.-.+|+..-
T Consensus 69 EL----~~~ei~~i~~~~~~~~~Ev~v~G~~~~m~s 100 (233)
T PF01136_consen 69 EL----SLEEIKEIAENSPGVPLEVIVHGNLPMMVS 100 (233)
T ss_pred cC----CHHHHHHHHHhCCCCeEEEEEeCCcccccC
Confidence 95 233333334455 88999988877776433
No 155
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=90.94 E-value=3 Score=36.95 Aligned_cols=153 Identities=17% Similarity=0.206 Sum_probs=99.1
Q ss_pred EEeeeecccChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEe---ccCcccchHHHH
Q 025927 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLM---IVEPEQRVPDFI 135 (246)
Q Consensus 59 ~IsPSIl~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLM---V~~P~~~i~~~~ 135 (246)
.+-|=+-..|.....+.++.|.+.|++.+-+.. |..-..+.|+++++. .| ++.+= |.+++. ++..+
T Consensus 9 ~liaVlr~~~~e~a~~~~~al~~~Gi~~iEit~-------~t~~a~~~i~~l~~~--~~-~~~vGAGTVl~~~~-a~~a~ 77 (204)
T TIGR01182 9 KIVPVIRIDDVDDALPLAKALIEGGLRVLEVTL-------RTPVALDAIRLLRKE--VP-DALIGAGTVLNPEQ-LRQAV 77 (204)
T ss_pred CEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeC-------CCccHHHHHHHHHHH--CC-CCEEEEEeCCCHHH-HHHHH
Confidence 345555666788888899999999999998876 223345677777763 23 33332 345554 77889
Q ss_pred hcCCCEEEE-ccCCcccccHHHHHHHHHHcCCcEEEEEcCC--CChHHHHHhhhhcceEEEEeecCCCCCCcccHHHHHH
Q 025927 136 KAGADIVSV-HCEQSSTIHLHRTLNQIKDLGAKAGVVLNPA--TSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKK 212 (246)
Q Consensus 136 ~agad~It~-H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~--Tpve~l~~~l~~vD~VLvMsV~PGfgGQ~F~~~~l~K 212 (246)
++||+.|.- |.. .++++..+++|+ ..-|+ ||-|...-+-.-.|.|=+.-.+- +||-+|
T Consensus 78 ~aGA~FivsP~~~-------~~v~~~~~~~~i----~~iPG~~TptEi~~A~~~Ga~~vKlFPA~~-~GG~~y------- 138 (204)
T TIGR01182 78 DAGAQFIVSPGLT-------PELAKHAQDHGI----PIIPGVATPSEIMLALELGITALKLFPAEV-SGGVKM------- 138 (204)
T ss_pred HcCCCEEECCCCC-------HHHHHHHHHcCC----cEECCCCCHHHHHHHHHCCCCEEEECCchh-cCCHHH-------
Confidence 999997642 221 257888886654 45555 77776666544577776653211 234333
Q ss_pred HHHHHHHHHhcCCCCeEEEeCCCChhhhhhccc
Q 025927 213 ISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVPN 245 (246)
Q Consensus 213 I~~lr~l~~~~~~~~~I~VDGGI~~e~i~~l~~ 245 (246)
|+.|+.-++ +..+..=|||+.+|+.+..+
T Consensus 139 ikal~~plp----~i~~~ptGGV~~~N~~~~l~ 167 (204)
T TIGR01182 139 LKALAGPFP----QVRFCPTGGINLANVRDYLA 167 (204)
T ss_pred HHHHhccCC----CCcEEecCCCCHHHHHHHHh
Confidence 455555554 35788999999999987643
No 156
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=90.89 E-value=7.6 Score=36.28 Aligned_cols=163 Identities=10% Similarity=0.118 Sum_probs=97.9
Q ss_pred eccccC-CCCCCceeccccceeeeeeccccc-cCCCCCcEEeeeecccChhhHHHHHHHHHHcCCCEEEeeeccC-cccC
Q 025927 22 LQKTNL-NQPSSLSFTRRRIQTIVKASARVD-KFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDG-RFVP 98 (246)
Q Consensus 22 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~IsPSIl~aD~~~l~~~i~~l~~~g~d~lHiDIMDG-~FVp 98 (246)
+..|.. +-||-..|-.+++.+.+.-..-=. .|+==.+.-.-.-...|...+.++++.+.+.|++.+++==-|. .+ +
T Consensus 44 ~tvc~~a~cpn~~ec~~~~tatfm~i~~gC~~~C~FC~v~~~rg~~~~~~eei~~~a~~~~~~GlkevvLTsv~~ddl-~ 122 (302)
T TIGR00510 44 HTVCEEASCPNLTECWNHGTATFMILGDICTRRCPFCDVAHGRNPLPPDPEEPAKLAETIKDMGLKYVVITSVDRDDL-E 122 (302)
T ss_pred ceeecCCCCCCcccccCCCEEEEEecCcCcCCCCCcCCccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeecCCCc-c
Confidence 344444 668888888888888888543222 2221000000001113778899999999999999988754332 12 2
Q ss_pred CCC--CCHHHHhhcccCCCCCeeEEEeccCc---ccchHHHHhcCCCEEEEccCCcc-----------cccHHHHHHHHH
Q 025927 99 NIT--IGPLVVDALRPVTDLPLDVHLMIVEP---EQRVPDFIKAGADIVSVHCEQSS-----------TIHLHRTLNQIK 162 (246)
Q Consensus 99 N~t--fgp~~I~~ir~~t~~plDvHLMV~~P---~~~i~~~~~agad~It~H~E~~~-----------~~~~~~~i~~Ik 162 (246)
.-+ -=.+.|++|++... .+-+++.+.++ ...++.+.++|+|.+....|+.. .+...++++++|
T Consensus 123 d~g~~~l~~li~~I~~~~p-~i~Ievl~~d~~g~~e~l~~l~~aG~dv~~hnlEt~~~l~~~vrr~~t~e~~Le~l~~ak 201 (302)
T TIGR00510 123 DGGASHLAECIEAIREKLP-NIKIETLVPDFRGNIAALDILLDAPPDVYNHNLETVERLTPFVRPGATYRWSLKLLERAK 201 (302)
T ss_pred cccHHHHHHHHHHHHhcCC-CCEEEEeCCcccCCHHHHHHHHHcCchhhcccccchHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 211 12466777766321 13455565554 45788899999998888777530 112346788888
Q ss_pred Hc--CC--cEEEEEcCCCChHHHHHhhh
Q 025927 163 DL--GA--KAGVVLNPATSLSAIECVLD 186 (246)
Q Consensus 163 ~~--G~--k~GlAlnP~Tpve~l~~~l~ 186 (246)
+. |+ +.|+.+.-+-..+++...+.
T Consensus 202 ~~~pgi~~~TgiIVGlGETeee~~etl~ 229 (302)
T TIGR00510 202 EYLPNLPTKSGIMVGLGETNEEIKQTLK 229 (302)
T ss_pred HhCCCCeecceEEEECCCCHHHHHHHHH
Confidence 87 44 56888887766666666554
No 157
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=90.74 E-value=1.4 Score=40.71 Aligned_cols=78 Identities=15% Similarity=0.255 Sum_probs=54.9
Q ss_pred cHHHHHHHHHHc--CCcEEEEEcCCCChHHHHHhhhh-cceEEEEeecCCCCCCcccHHHHHHHHHHHHHHHhcCCCCeE
Q 025927 153 HLHRTLNQIKDL--GAKAGVVLNPATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWI 229 (246)
Q Consensus 153 ~~~~~i~~Ik~~--G~k~GlAlnP~Tpve~l~~~l~~-vD~VLvMsV~PGfgGQ~F~~~~l~KI~~lr~l~~~~~~~~~I 229 (246)
.+...++.+|+. +.| +.+-.. +++..++.++. +|.|++= +|.|+.+++. -+++++.+.+..+
T Consensus 174 ~i~~av~~~r~~~~~~k--IeVEv~-tleea~ea~~~GaDiI~lD---------n~~~e~l~~~---v~~l~~~~~~~~l 238 (277)
T TIGR01334 174 DWGGAIGRLKQTAPERK--ITVEAD-TIEQALTVLQASPDILQLD---------KFTPQQLHHL---HERLKFFDHIPTL 238 (277)
T ss_pred cHHHHHHHHHHhCCCCC--EEEECC-CHHHHHHHHHcCcCEEEEC---------CCCHHHHHHH---HHHHhccCCCEEE
Confidence 466788888876 455 444433 77888887765 9998875 5566655544 3444444556789
Q ss_pred EEeCCCChhhhhhccc
Q 025927 230 EVDGGVGPKNAYKVPN 245 (246)
Q Consensus 230 ~VDGGI~~e~i~~l~~ 245 (246)
++=||||.+|++++++
T Consensus 239 easGGI~~~ni~~ya~ 254 (277)
T TIGR01334 239 AAAGGINPENIADYIE 254 (277)
T ss_pred EEECCCCHHHHHHHHh
Confidence 9999999999988754
No 158
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=90.70 E-value=0.84 Score=39.14 Aligned_cols=80 Identities=13% Similarity=0.204 Sum_probs=51.4
Q ss_pred cHHHHHHHHHHcCCcE-EEEEcCCCChHHHHHhhh-hcceEEEEeecCCCCCCcccHHHHHHHHHHHHHHHhcCCCCeEE
Q 025927 153 HLHRTLNQIKDLGAKA-GVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIE 230 (246)
Q Consensus 153 ~~~~~i~~Ik~~G~k~-GlAlnP~Tpve~l~~~l~-~vD~VLvMsV~PGfgGQ~F~~~~l~KI~~lr~l~~~~~~~~~I~ 230 (246)
.+.+.++.+|+.--.. -+.+.-++ ++++++.+. .+|.|++=.. .|+. ++++.+.+.+.+.+..|+
T Consensus 65 ~i~~av~~~~~~~~~~~~I~VEv~~-~ee~~ea~~~g~d~I~lD~~---------~~~~---~~~~v~~l~~~~~~v~ie 131 (169)
T PF01729_consen 65 GIEEAVKAARQAAPEKKKIEVEVEN-LEEAEEALEAGADIIMLDNM---------SPED---LKEAVEELRELNPRVKIE 131 (169)
T ss_dssp SHHHHHHHHHHHSTTTSEEEEEESS-HHHHHHHHHTT-SEEEEES----------CHHH---HHHHHHHHHHHTTTSEEE
T ss_pred CHHHHHHHHHHhCCCCceEEEEcCC-HHHHHHHHHhCCCEEEecCc---------CHHH---HHHHHHHHhhcCCcEEEE
Confidence 4667777777653222 26666555 566666554 5899988543 3343 444444445556668999
Q ss_pred EeCCCChhhhhhccc
Q 025927 231 VDGGVGPKNAYKVPN 245 (246)
Q Consensus 231 VDGGI~~e~i~~l~~ 245 (246)
+=||||.+|+.++.+
T Consensus 132 ~SGGI~~~ni~~ya~ 146 (169)
T PF01729_consen 132 ASGGITLENIAEYAK 146 (169)
T ss_dssp EESSSSTTTHHHHHH
T ss_pred EECCCCHHHHHHHHh
Confidence 999999999998754
No 159
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=90.67 E-value=6.8 Score=38.62 Aligned_cols=161 Identities=18% Similarity=0.203 Sum_probs=94.0
Q ss_pred hhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCe-------eEEEeccCc--ccchHHHHhcCCC
Q 025927 70 AKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL-------DVHLMIVEP--EQRVPDFIKAGAD 140 (246)
Q Consensus 70 ~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~pl-------DvHLMV~~P--~~~i~~~~~agad 140 (246)
..+.+-++.+.+.+++++=+.=-+|+++--++. -++++.+. +.+... -.-.|..+| ...++.+.++|++
T Consensus 165 ~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~-~DLl~~~~-~p~a~~d~~g~l~V~aai~~~~~~~e~a~~L~~agvd 242 (486)
T PRK05567 165 TTLEEALELLHEHRIEKLPVVDDNGRLKGLITV-KDIEKAEE-FPNACKDEQGRLRVGAAVGVGADNEERAEALVEAGVD 242 (486)
T ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEh-HHhhhhhh-CCCcccccCCCEEEEeecccCcchHHHHHHHHHhCCC
Confidence 456677888888888888776667777655543 23343332 111111 123455455 4678889999999
Q ss_pred EEEE---ccCCcccccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhh-hcceEEEEeecCC--CCCCcc---cHHHHH
Q 025927 141 IVSV---HCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPG--FGGQSF---IESQVK 211 (246)
Q Consensus 141 ~It~---H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~-~vD~VLvMsV~PG--fgGQ~F---~~~~l~ 211 (246)
.+.+ |-. .......++++|+..-.+=|...--...+....+++ -+|.|-+ ++-|| .+++.+ -...+.
T Consensus 243 vivvD~a~g~---~~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~aGad~i~v-g~g~gs~~~~r~~~~~g~p~~~ 318 (486)
T PRK05567 243 VLVVDTAHGH---SEGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEAGADAVKV-GIGPGSICTTRIVAGVGVPQIT 318 (486)
T ss_pred EEEEECCCCc---chhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHcCCCEEEE-CCCCCccccceeecCCCcCHHH
Confidence 8876 322 235667888888764333333455566677777765 4888875 33344 223322 112344
Q ss_pred HHHHHHHHHHhcCCCCeEEEeCCCChh
Q 025927 212 KISDLRRMCLEKGVNPWIEVDGGVGPK 238 (246)
Q Consensus 212 KI~~lr~l~~~~~~~~~I~VDGGI~~e 238 (246)
-+.++++...+. +..|..||||+..
T Consensus 319 ~~~~~~~~~~~~--~~~viadGGi~~~ 343 (486)
T PRK05567 319 AIADAAEAAKKY--GIPVIADGGIRYS 343 (486)
T ss_pred HHHHHHHHhccC--CCeEEEcCCCCCH
Confidence 444555544332 4578999999754
No 160
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=90.67 E-value=10 Score=34.41 Aligned_cols=112 Identities=13% Similarity=0.159 Sum_probs=70.3
Q ss_pred ChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCe-eEEEeccCcc---cchHHHHhcCCCEEE
Q 025927 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL-DVHLMIVEPE---QRVPDFIKAGADIVS 143 (246)
Q Consensus 68 D~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~pl-DvHLMV~~P~---~~i~~~~~agad~It 143 (246)
+...+.+.++.+.+.|++.+ .+..|.-.-+-.| .++++.+++. .+ ++.+-+ |.. .+++.+.++|.+.|.
T Consensus 41 s~eei~~~i~~~~~~gi~~I--~~tGGEPll~~~l-~~iv~~l~~~---g~~~v~i~T-NG~ll~~~~~~l~~~g~~~v~ 113 (302)
T TIGR02668 41 SPEEIERIVRVASEFGVRKV--KITGGEPLLRKDL-IEIIRRIKDY---GIKDVSMTT-NGILLEKLAKKLKEAGLDRVN 113 (302)
T ss_pred CHHHHHHHHHHHHHcCCCEE--EEECcccccccCH-HHHHHHHHhC---CCceEEEEc-CchHHHHHHHHHHHCCCCEEE
Confidence 34456666777777888764 4577863322233 3566666653 33 666644 442 566778889999999
Q ss_pred EccCCcc------------cccHHHHHHHHHHcCCc---EEEEEcCCCChHHHHHhhh
Q 025927 144 VHCEQSS------------TIHLHRTLNQIKDLGAK---AGVVLNPATSLSAIECVLD 186 (246)
Q Consensus 144 ~H~E~~~------------~~~~~~~i~~Ik~~G~k---~GlAlnP~Tpve~l~~~l~ 186 (246)
+-+++.. .+...+.++.+++.|+. +..++.|+...+.+.++++
T Consensus 114 iSld~~~~~~~~~i~~~~~~~~vl~~i~~~~~~G~~~v~i~~v~~~g~n~~ei~~~~~ 171 (302)
T TIGR02668 114 VSLDTLDPEKYKKITGRGALDRVIEGIESAVDAGLTPVKLNMVVLKGINDNEIPDMVE 171 (302)
T ss_pred EEecCCCHHHhhhccCCCcHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHH
Confidence 8887631 11234556666778754 4567888777777777665
No 161
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=90.66 E-value=5.6 Score=37.49 Aligned_cols=156 Identities=11% Similarity=0.180 Sum_probs=90.0
Q ss_pred hhHHHHHHHHHHc---CCCEEEeeeccCcccCCCCCCHHHHhh----cccCCCCC--eeEEEeccCcc----cchHHHHh
Q 025927 70 AKLGEQVKAVELA---GCDWIHVDVMDGRFVPNITIGPLVVDA----LRPVTDLP--LDVHLMIVEPE----QRVPDFIK 136 (246)
Q Consensus 70 ~~l~~~i~~l~~~---g~d~lHiDIMDG~FVpN~tfgp~~I~~----ir~~t~~p--lDvHLMV~~P~----~~i~~~~~ 136 (246)
..+.+|++.+... +++.++ +-+|++. .+.++.++. +++..++. .++.+. .+|. ..++.+.+
T Consensus 35 ~~l~~Ei~~~~~~~~~~i~~i~--~gGGtpt---~l~~~~l~~ll~~i~~~~~~~~~~eit~e-~~p~~l~~e~l~~l~~ 108 (377)
T PRK08599 35 DALIKEMNTYAIRPFDKLKTIY--IGGGTPT---ALSAEQLERLLTAIHRNLPLSGLEEFTFE-ANPGDLTKEKLQVLKD 108 (377)
T ss_pred HHHHHHHHHhhhcCCCceeEEE--eCCCCcc---cCCHHHHHHHHHHHHHhCCCCCCCEEEEE-eCCCCCCHHHHHHHHH
Confidence 4677777666544 344443 3566553 234444444 45443322 234443 3664 56778889
Q ss_pred cCCCEEEEccCCcc------------cccHHHHHHHHHHcCCc-EEE--EEc-CCCChHHHHHhhhh-----cceEEE--
Q 025927 137 AGADIVSVHCEQSS------------TIHLHRTLNQIKDLGAK-AGV--VLN-PATSLSAIECVLDV-----VDLVLI-- 193 (246)
Q Consensus 137 agad~It~H~E~~~------------~~~~~~~i~~Ik~~G~k-~Gl--Aln-P~Tpve~l~~~l~~-----vD~VLv-- 193 (246)
+|+++|++=+|+.. .++..+.++.+++.|+. +++ .+. |+...+.++.-++. +|.|-+
T Consensus 109 ~G~~rvsiGvqS~~~~~l~~l~r~~~~~~~~~~i~~l~~~g~~~v~~dli~GlPgqt~~~~~~~l~~~~~l~~~~i~~y~ 188 (377)
T PRK08599 109 SGVNRISLGVQTFNDELLKKIGRTHNEEDVYEAIANAKKAGFDNISIDLIYALPGQTIEDFKESLAKALALDIPHYSAYS 188 (377)
T ss_pred cCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEeeecCCCCCCHHHHHHHHHHHHccCCCEEeeec
Confidence 99999999999752 12366788889999976 444 334 66666666655543 555544
Q ss_pred EeecCC--CC-----CCc-c--cHHHHHHHHHHHHHHHhcCCCCeEEEe
Q 025927 194 MSVNPG--FG-----GQS-F--IESQVKKISDLRRMCLEKGVNPWIEVD 232 (246)
Q Consensus 194 MsV~PG--fg-----GQ~-F--~~~~l~KI~~lr~l~~~~~~~~~I~VD 232 (246)
+++.|| +. |.. . .+...+-.+.+.+.+.+.|+. .++++
T Consensus 189 l~~~pgT~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy~-~~~~~ 236 (377)
T PRK08599 189 LILEPKTVFYNLMRKGKLRLPGEDLEAEMYEYLMDEMEAHGFH-QYEIS 236 (377)
T ss_pred eeecCCChhHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcCCc-Eeeee
Confidence 457777 21 211 1 223333445567788888875 35543
No 162
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=90.66 E-value=7.7 Score=39.14 Aligned_cols=165 Identities=18% Similarity=0.126 Sum_probs=103.4
Q ss_pred hHHHHHHHHHHcCCCEEEeeeccCccc--CCCCCCHHHHhhcccCCCCCeeEEEeccCc----------ccchHHHHhcC
Q 025927 71 KLGEQVKAVELAGCDWIHVDVMDGRFV--PNITIGPLVVDALRPVTDLPLDVHLMIVEP----------EQRVPDFIKAG 138 (246)
Q Consensus 71 ~l~~~i~~l~~~g~d~lHiDIMDG~FV--pN~tfgp~~I~~ir~~t~~plDvHLMV~~P----------~~~i~~~~~ag 138 (246)
+.-+..+..++.|+|+||+==.|+..- ++-.--.++|+++.+.+.+|+.+===+.+. ...++.+.++|
T Consensus 268 dPve~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~~G 347 (538)
T PLN02617 268 KPVELAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASENVFVPLTVGGGIRDFTDANGRYYSSLEVASEYFRSG 347 (538)
T ss_pred CHHHHHHHHHHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhCCCCEEEcCCccccccccccccchHHHHHHHHHcC
Confidence 334667888899999999644455321 111112567888877667777765445553 24478899999
Q ss_pred CCEEEEccCCccc----------ccHHHHHHHHHHcCCc-EEEEEcCC--------------------------------
Q 025927 139 ADIVSVHCEQSST----------IHLHRTLNQIKDLGAK-AGVVLNPA-------------------------------- 175 (246)
Q Consensus 139 ad~It~H~E~~~~----------~~~~~~i~~Ik~~G~k-~GlAlnP~-------------------------------- 175 (246)
||.|++=-.+... .++.-+-+..++.|-+ +-++|.+.
T Consensus 348 adkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~fg~q~ivvsiD~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 427 (538)
T PLN02617 348 ADKISIGSDAVYAAEEYIASGVKTGKTSIEQISRVYGNQAVVVSIDPRRVYVKDPSDVPFKTVKVTNPGPNGEEYAWYQC 427 (538)
T ss_pred CCEEEEChHHHhChhhhhccccccCHHHHHHHHHHcCCceEEEEEecCcCcccCccccccccccccccCcCcccceEEEE
Confidence 9999997643211 1234444555677877 67777742
Q ss_pred --------CCh---HHHHHhhhh-cceEEEEeecCCCCCCcccHHHHHHHHHHHHHHHhcCCCCeEEEeCCC-Chhhhhh
Q 025927 176 --------TSL---SAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGV-GPKNAYK 242 (246)
Q Consensus 176 --------Tpv---e~l~~~l~~-vD~VLvMsV~PGfgGQ~F~~~~l~KI~~lr~l~~~~~~~~~I~VDGGI-~~e~i~~ 242 (246)
|.+ +..+.+-+. +--||+-+++-.-..+-|+-+.+++|++. .+..+.+=||+ +.+.+.+
T Consensus 428 ~~~gg~~~~~~~~~~~~~~~~~~Gageil~t~id~DGt~~G~d~~l~~~v~~~--------~~ipviasGG~g~~~d~~~ 499 (538)
T PLN02617 428 TVKGGREGRPIGAYELAKAVEELGAGEILLNCIDCDGQGKGFDIELVKLVSDA--------VTIPVIASSGAGTPEHFSD 499 (538)
T ss_pred EEecCcccCCCCHHHHHHHHHhcCCCEEEEeeccccccccCcCHHHHHHHHhh--------CCCCEEEECCCCCHHHHHH
Confidence 122 333444333 66799999998778888998888777643 23345566665 4555554
Q ss_pred c
Q 025927 243 V 243 (246)
Q Consensus 243 l 243 (246)
+
T Consensus 500 ~ 500 (538)
T PLN02617 500 V 500 (538)
T ss_pred H
Confidence 4
No 163
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=90.64 E-value=0.86 Score=42.35 Aligned_cols=115 Identities=14% Similarity=0.172 Sum_probs=71.8
Q ss_pred cChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCC--HHHHhhcccCCCCCeeEEEecc---------C---cccchH
Q 025927 67 ANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIG--PLVVDALRPVTDLPLDVHLMIV---------E---PEQRVP 132 (246)
Q Consensus 67 aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfg--p~~I~~ir~~t~~plDvHLMV~---------~---P~~~i~ 132 (246)
.+...+.+.++.+.+.|++.+|+ .+|.. |+..+. .+.++.|++.. ..+.+|-++. + -...++
T Consensus 72 ls~eei~~~~~~~~~~G~~~i~l--~gG~~-p~~~~~~~~~li~~Ik~~~-~~i~~~~~s~~ei~~~~~~~g~~~~e~l~ 147 (340)
T TIGR03699 72 LSVEEILQKIEELVAYGGTQILL--QGGVN-PDLGLDYYEDLFRAIKARF-PHIHIHSFSPVEIVYIAKKEGLSLREVLE 147 (340)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEE--ecCCC-CCCCHHHHHHHHHHHHHHC-CCcCCCCCCHHHHHHHhccCCCCHHHHHH
Confidence 46678888899999999999998 46643 443332 24566666532 1244443211 1 145668
Q ss_pred HHHhcCCCEEEE-ccCCc-------------ccccHHHHHHHHHHcCCcE--EEEEcCCCChHHHHHhh
Q 025927 133 DFIKAGADIVSV-HCEQS-------------STIHLHRTLNQIKDLGAKA--GVVLNPATSLSAIECVL 185 (246)
Q Consensus 133 ~~~~agad~It~-H~E~~-------------~~~~~~~~i~~Ik~~G~k~--GlAlnP~Tpve~l~~~l 185 (246)
.+.++|++.+.. -.|.. +..+..++++.+|+.|+++ |+.+.++-..+.+.+.+
T Consensus 148 ~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~~~iiGlgEt~ed~~~~l 216 (340)
T TIGR03699 148 RLKEAGLDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTATMMFGHVETLEDRIEHL 216 (340)
T ss_pred HHHHcCCCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEeeCCCCHHHHHHHH
Confidence 899999998762 23432 1223568888899999765 67777776665555544
No 164
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=90.61 E-value=15 Score=34.59 Aligned_cols=146 Identities=19% Similarity=0.233 Sum_probs=89.8
Q ss_pred ChhhHHHHHHHHHHcCCCEEEeeeccC----cccCCCC-C-CHHHHhhcccC-CCCCeeEEEec--cCcccchHHHHhcC
Q 025927 68 NFAKLGEQVKAVELAGCDWIHVDVMDG----RFVPNIT-I-GPLVVDALRPV-TDLPLDVHLMI--VEPEQRVPDFIKAG 138 (246)
Q Consensus 68 D~~~l~~~i~~l~~~g~d~lHiDIMDG----~FVpN~t-f-gp~~I~~ir~~-t~~plDvHLMV--~~P~~~i~~~~~ag 138 (246)
......+-++.|.++|++.+=+=--|| .|..+++ + ..+.++++++. .+..+-+.+.- .+ .+.++...++|
T Consensus 22 ~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~-~~dl~~a~~~g 100 (333)
T TIGR03217 22 TIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVAVLLLPGIGT-VHDLKAAYDAG 100 (333)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCEEEEEeccCccC-HHHHHHHHHCC
Confidence 445666778899999999875532233 5544332 2 23455555442 23334333321 12 34577878889
Q ss_pred CCEEE--EccCCcccccHHHHHHHHHHcCCcEEEEE--cCCCChHHHHHhhhh-----cceEEEEeecCCCCCCcccHHH
Q 025927 139 ADIVS--VHCEQSSTIHLHRTLNQIKDLGAKAGVVL--NPATSLSAIECVLDV-----VDLVLIMSVNPGFGGQSFIESQ 209 (246)
Q Consensus 139 ad~It--~H~E~~~~~~~~~~i~~Ik~~G~k~GlAl--nP~Tpve~l~~~l~~-----vD~VLvMsV~PGfgGQ~F~~~~ 209 (246)
++.|- +|... .+.....++++|+.|+++...+ ...++.+.+.++... +|.|-+. .-.|...-.++
T Consensus 101 vd~iri~~~~~e--~d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i~i~----DT~G~~~P~~v 174 (333)
T TIGR03217 101 ARTVRVATHCTE--ADVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCVYIV----DSAGAMLPDDV 174 (333)
T ss_pred CCEEEEEeccch--HHHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcCCCEEEEc----cCCCCCCHHHH
Confidence 99554 66642 2456788999999999986555 555677777766543 5554332 34566666777
Q ss_pred HHHHHHHHHHH
Q 025927 210 VKKISDLRRMC 220 (246)
Q Consensus 210 l~KI~~lr~l~ 220 (246)
.+.++.+|+..
T Consensus 175 ~~~v~~l~~~l 185 (333)
T TIGR03217 175 RDRVRALKAVL 185 (333)
T ss_pred HHHHHHHHHhC
Confidence 77888877665
No 165
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=90.52 E-value=11 Score=36.61 Aligned_cols=159 Identities=13% Similarity=0.222 Sum_probs=90.9
Q ss_pred hhhHHHHHHHHHHc---CCCEEEeeeccCcccCCCCCCHHH----HhhcccCCCC--CeeEEEeccCcc----cchHHHH
Q 025927 69 FAKLGEQVKAVELA---GCDWIHVDVMDGRFVPNITIGPLV----VDALRPVTDL--PLDVHLMIVEPE----QRVPDFI 135 (246)
Q Consensus 69 ~~~l~~~i~~l~~~---g~d~lHiDIMDG~FVpN~tfgp~~----I~~ir~~t~~--plDvHLMV~~P~----~~i~~~~ 135 (246)
+..|.+||+.+.+. +-..-.+-+.+|++. .+.++. ++.+++...+ ..++.+-+ ||. ..++.+.
T Consensus 83 ~~~L~~Ei~~~~~~~~~~~~v~~I~fgGGtP~---~l~~~~l~~ll~~i~~~~~~~~~~eitie~-np~~l~~e~l~~lk 158 (455)
T TIGR00538 83 LDALEKEIALVAPLFDGNRHVSQLHWGGGTPT---YLSPEQISRLMKLIRENFPFNADAEISIEI-DPRYITKDVIDALR 158 (455)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEEECCCCcC---CCCHHHHHHHHHHHHHhCCCCCCCeEEEEe-ccCcCCHHHHHHHH
Confidence 45666777665331 113345556777653 123344 4444543221 22344432 564 5688889
Q ss_pred hcCCCEEEEccCCcc------------cccHHHHHHHHHHcCCc-EE--EEEc-CCCChHHHHHhhhh-----cceEEEE
Q 025927 136 KAGADIVSVHCEQSS------------TIHLHRTLNQIKDLGAK-AG--VVLN-PATSLSAIECVLDV-----VDLVLIM 194 (246)
Q Consensus 136 ~agad~It~H~E~~~------------~~~~~~~i~~Ik~~G~k-~G--lAln-P~Tpve~l~~~l~~-----vD~VLvM 194 (246)
++|+++|++=+|+.. .++..+.++.+|+.|++ +. +.+. |+...+.+..-++. +|.|-+.
T Consensus 159 ~~G~~risiGvqS~~~~~l~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~e~~~~tl~~~~~l~~~~is~y 238 (455)
T TIGR00538 159 DEGFNRLSFGVQDFNKEVQQAVNRIQPEEMIFELMNHAREAGFTSINIDLIYGLPKQTKESFAKTLEKVAELNPDRLAVF 238 (455)
T ss_pred HcCCCEEEEcCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEe
Confidence 999999999888652 12356788889999985 44 4444 77777777665543 6777664
Q ss_pred --eecCCC-C-----CC-cc--cHHHHHHHHHHHHHHHhcCCCCeEEEe
Q 025927 195 --SVNPGF-G-----GQ-SF--IESQVKKISDLRRMCLEKGVNPWIEVD 232 (246)
Q Consensus 195 --sV~PGf-g-----GQ-~F--~~~~l~KI~~lr~l~~~~~~~~~I~VD 232 (246)
++.|+. . +. .+ .++..+-.+.+.+.+.+.|+. .++++
T Consensus 239 ~L~~~p~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~L~~~Gy~-~~~~~ 286 (455)
T TIGR00538 239 NYAHVPWVKPAQRKIPEAALPSAEEKLDILQETIAFLTEAGYQ-FIGMD 286 (455)
T ss_pred cCccccchhHHHhcccccCCCCHHHHHHHHHHHHHHHHHCCCE-EEecc
Confidence 445652 1 11 11 234444556667777777774 35443
No 166
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=90.49 E-value=0.6 Score=42.99 Aligned_cols=114 Identities=16% Similarity=0.169 Sum_probs=70.1
Q ss_pred cChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCC--CHHHHhhcccCCCCCeeEEEecc------------CcccchH
Q 025927 67 ANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITI--GPLVVDALRPVTDLPLDVHLMIV------------EPEQRVP 132 (246)
Q Consensus 67 aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tf--gp~~I~~ir~~t~~plDvHLMV~------------~P~~~i~ 132 (246)
.+..++.++++...+.|++.+|+= +|.. |...+ =.++++.|++.. ..+.+|-++. .....++
T Consensus 36 ls~eeI~~~~~~~~~~G~~~i~l~--gg~~-~~~~~~~~~~i~~~Ik~~~-~~i~~~~~s~~e~~~~~~~~g~~~~e~l~ 111 (309)
T TIGR00423 36 LSLEEILEKVKEAVAKGATEVCIQ--GGLN-PQLDIEYYEELFRAIKQEF-PDVHIHAFSPMEVYFLAKNEGLSIEEVLK 111 (309)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEe--cCCC-CCCCHHHHHHHHHHHHHHC-CCceEEecCHHHHHHHHHHcCCCHHHHHH
Confidence 577888899999989999999984 5543 33222 234666666642 1234443321 1356788
Q ss_pred HHHhcCCCEEE-EccCCc-------------ccccHHHHHHHHHHcCCcE--EEEEcCCCChHHHHHh
Q 025927 133 DFIKAGADIVS-VHCEQS-------------STIHLHRTLNQIKDLGAKA--GVVLNPATSLSAIECV 184 (246)
Q Consensus 133 ~~~~agad~It-~H~E~~-------------~~~~~~~~i~~Ik~~G~k~--GlAlnP~Tpve~l~~~ 184 (246)
.|.++|++.+. .-.|.. +.++..++++.+++.|+++ |+.+...-..++....
T Consensus 112 ~LkeAGl~~i~~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~~Gi~~~s~~iiG~~Et~ed~~~~ 179 (309)
T TIGR00423 112 RLKKAGLDSMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHRLGIPTTATMMFGHVENPEHRVEH 179 (309)
T ss_pred HHHHcCCCcCCCCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCceeeEEecCCCCHHHHHHH
Confidence 99999999885 334432 1223467888999999886 5556533334443333
No 167
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=90.36 E-value=4.4 Score=39.46 Aligned_cols=158 Identities=15% Similarity=0.226 Sum_probs=90.9
Q ss_pred hhHHHHHHHHHHc---CCCEEEeeeccCcccCCCCCCHHHHhh----cccCCCC--CeeEEEeccCcc----cchHHHHh
Q 025927 70 AKLGEQVKAVELA---GCDWIHVDVMDGRFVPNITIGPLVVDA----LRPVTDL--PLDVHLMIVEPE----QRVPDFIK 136 (246)
Q Consensus 70 ~~l~~~i~~l~~~---g~d~lHiDIMDG~FVpN~tfgp~~I~~----ir~~t~~--plDvHLMV~~P~----~~i~~~~~ 136 (246)
..|.+||+...+. +...-.+-+-+|++ ..+.++.+.+ |++..++ ..++.+- .||. ..++.+.+
T Consensus 85 ~~L~~Ei~~~~~~~~~~~~v~~i~fgGGTP---s~l~~~~l~~ll~~i~~~~~~~~~~e~tie-~~p~~lt~e~l~~L~~ 160 (453)
T PRK13347 85 AALIREIRLVAASLPQRRRVSQLHWGGGTP---TILNPDQFERLMAALRDAFDFAPEAEIAVE-IDPRTVTAEMLQALAA 160 (453)
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEEEcCccc---ccCCHHHHHHHHHHHHHhCCCCCCceEEEE-eccccCCHHHHHHHHH
Confidence 4566677655432 12334444556654 2234444444 4443222 2344544 3675 56788899
Q ss_pred cCCCEEEEccCCcc------------cccHHHHHHHHHHcCCc-EE--EEEc-CCCChHHHHHhhhh-----cceEEEEe
Q 025927 137 AGADIVSVHCEQSS------------TIHLHRTLNQIKDLGAK-AG--VVLN-PATSLSAIECVLDV-----VDLVLIMS 195 (246)
Q Consensus 137 agad~It~H~E~~~------------~~~~~~~i~~Ik~~G~k-~G--lAln-P~Tpve~l~~~l~~-----vD~VLvMs 195 (246)
+|+++|++=+|+.. .++..+.++.+|+.|++ ++ +... |+...+.+..-++. +|.|-+..
T Consensus 161 ~G~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dli~GlPgqt~e~~~~tl~~~~~l~p~~i~~y~ 240 (453)
T PRK13347 161 LGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAAGFESINFDLIYGLPHQTVESFRETLDKVIALSPDRIAVFG 240 (453)
T ss_pred cCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEec
Confidence 99999999998752 12356788889999986 44 4444 66777666655543 67776654
Q ss_pred --ecCCCC-CCc-----ccH---HHHHHHHHHHHHHHhcCCCCeEEEe
Q 025927 196 --VNPGFG-GQS-----FIE---SQVKKISDLRRMCLEKGVNPWIEVD 232 (246)
Q Consensus 196 --V~PGfg-GQ~-----F~~---~~l~KI~~lr~l~~~~~~~~~I~VD 232 (246)
..|++. .|+ -.| +.++-.+.+.+.+.++|+. .+++|
T Consensus 241 l~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy~-~~~~~ 287 (453)
T PRK13347 241 YAHVPSRRKNQRLIDEAALPDAEERLRQARAVADRLLAAGYV-PIGLD 287 (453)
T ss_pred cccccchhhHHhcCCccCCcCHHHHHHHHHHHHHHHHHCCCE-EEecc
Confidence 346532 221 122 3333344567777888874 46654
No 168
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=90.27 E-value=8.1 Score=34.22 Aligned_cols=154 Identities=18% Similarity=0.127 Sum_probs=97.7
Q ss_pred EEeeeecccChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCC-CCeeEEEe---ccCcccchHHH
Q 025927 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTD-LPLDVHLM---IVEPEQRVPDF 134 (246)
Q Consensus 59 ~IsPSIl~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~-~plDvHLM---V~~P~~~i~~~ 134 (246)
.+-|=+-..|.....+.++.|.+.|+..+=+=. +..-..+.|+.+++... .| ++.+= |.+++ .++..
T Consensus 14 ~vi~vir~~~~~~a~~~~~al~~~Gi~~iEit~-------~~~~a~~~i~~l~~~~~~~p-~~~vGaGTV~~~~-~~~~a 84 (213)
T PRK06552 14 GVVAVVRGESKEEALKISLAVIKGGIKAIEVTY-------TNPFASEVIKELVELYKDDP-EVLIGAGTVLDAV-TARLA 84 (213)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEC-------CCccHHHHHHHHHHHcCCCC-CeEEeeeeCCCHH-HHHHH
Confidence 455556667888888999999999999887643 22335567777766321 12 33332 34544 36788
Q ss_pred HhcCCCEEEEc-cCCcccccHHHHHHHHHHcCCcEEEEEcCC--CChHHHHHhhhhcceEEEEeecCCCCCCcccHHHHH
Q 025927 135 IKAGADIVSVH-CEQSSTIHLHRTLNQIKDLGAKAGVVLNPA--TSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 211 (246)
Q Consensus 135 ~~agad~It~H-~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~--Tpve~l~~~l~~vD~VLvMsV~PGfgGQ~F~~~~l~ 211 (246)
.++|+++|--+ +. .+++++.+++| +.+-|+ ||-|...-+-.-+|+|-+ |....+-++.
T Consensus 85 ~~aGA~FivsP~~~-------~~v~~~~~~~~----i~~iPG~~T~~E~~~A~~~Gad~vkl------FPa~~~G~~~-- 145 (213)
T PRK06552 85 ILAGAQFIVSPSFN-------RETAKICNLYQ----IPYLPGCMTVTEIVTALEAGSEIVKL------FPGSTLGPSF-- 145 (213)
T ss_pred HHcCCCEEECCCCC-------HHHHHHHHHcC----CCEECCcCCHHHHHHHHHcCCCEEEE------CCcccCCHHH--
Confidence 99999976533 22 35777778665 444555 554555444456899887 3233333333
Q ss_pred HHHHHHHHHHhcCCCCeEEEeCCCChhhhhhccc
Q 025927 212 KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVPN 245 (246)
Q Consensus 212 KI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~l~~ 245 (246)
|+.++..++ +..+..=||||.+|+.++.+
T Consensus 146 -ik~l~~~~p----~ip~~atGGI~~~N~~~~l~ 174 (213)
T PRK06552 146 -IKAIKGPLP----QVNVMVTGGVNLDNVKDWFA 174 (213)
T ss_pred -HHHHhhhCC----CCEEEEECCCCHHHHHHHHH
Confidence 455555543 25788999999999988754
No 169
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=90.22 E-value=2.5 Score=42.06 Aligned_cols=128 Identities=19% Similarity=0.190 Sum_probs=78.8
Q ss_pred CCCcEEeeeecccChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcc--cchH
Q 025927 55 KSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPE--QRVP 132 (246)
Q Consensus 55 ~~~~~IsPSIl~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~--~~i~ 132 (246)
.++.++..++-.-+ .-.+.++.|.++|+|.||+|.-+||=. +-.+.|++||+.. | ++-+++-|-. .-..
T Consensus 227 ~GrL~Vgaavg~~~--~~~~~~~~l~~ag~d~i~id~a~G~s~----~~~~~i~~ik~~~--~-~~~v~aG~V~t~~~a~ 297 (495)
T PTZ00314 227 NGQLLVGAAISTRP--EDIERAAALIEAGVDVLVVDSSQGNSI----YQIDMIKKLKSNY--P-HVDIIAGNVVTADQAK 297 (495)
T ss_pred CCCEEEEEEECCCH--HHHHHHHHHHHCCCCEEEEecCCCCch----HHHHHHHHHHhhC--C-CceEEECCcCCHHHHH
Confidence 34556656554322 236778889999999999999987542 1256889998753 2 5667765544 3466
Q ss_pred HHHhcCCCEEEEccC-----Cc------ccccH---HHHHHHHHHcCCcEEEEEcC----CCChHHHHHhhhhcceEEEE
Q 025927 133 DFIKAGADIVSVHCE-----QS------STIHL---HRTLNQIKDLGAKAGVVLNP----ATSLSAIECVLDVVDLVLIM 194 (246)
Q Consensus 133 ~~~~agad~It~H~E-----~~------~~~~~---~~~i~~Ik~~G~k~GlAlnP----~Tpve~l~~~l~~vD~VLvM 194 (246)
.++++|||.|-+=.. .+ ..+++ .++.+..++. |+.+-+ .||-+..+-+--=+|.|++=
T Consensus 298 ~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~----~v~vIadGGi~~~~di~kAla~GA~~Vm~G 373 (495)
T PTZ00314 298 NLIDAGADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARER----GVPCIADGGIKNSGDICKALALGADCVMLG 373 (495)
T ss_pred HHHHcCCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhc----CCeEEecCCCCCHHHHHHHHHcCCCEEEEC
Confidence 889999999854211 00 01222 2233334444 455555 47777777665568888773
Q ss_pred e
Q 025927 195 S 195 (246)
Q Consensus 195 s 195 (246)
+
T Consensus 374 ~ 374 (495)
T PTZ00314 374 S 374 (495)
T ss_pred c
Confidence 3
No 170
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=90.11 E-value=2.6 Score=38.70 Aligned_cols=78 Identities=12% Similarity=0.205 Sum_probs=54.3
Q ss_pred EEeccCcc---cchHHH----HhcCCCEEEEccCCccccc---HHHHHHHH----HHcCCcEEEEEcCCCChHHHHHhhh
Q 025927 121 HLMIVEPE---QRVPDF----IKAGADIVSVHCEQSSTIH---LHRTLNQI----KDLGAKAGVVLNPATSLSAIECVLD 186 (246)
Q Consensus 121 HLMV~~P~---~~i~~~----~~agad~It~H~E~~~~~~---~~~~i~~I----k~~G~k~GlAlnP~Tpve~l~~~l~ 186 (246)
|-|+.+|. ++++.+ .+.|-|-|-+.+|.....+ ...+++.+ ++.|...-+++.+.+....+..+.+
T Consensus 80 ~~~l~~~~~R~~fi~~iv~~~~~~~~dGidiD~E~~~~~d~~~~~~fl~eL~~~l~~~~~~lsv~v~~~~~~~d~~~l~~ 159 (298)
T cd06549 80 ARLLADPSARAKFIANIAAYLERNQADGIVLDFEELPADDLPKYVAFLSELRRRLPAQGKQLTVTVPADEADWNLKALAR 159 (298)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHhCCCCEEEecCCCChhHHHHHHHHHHHHHHHhhhcCcEEEEEecCCCCCCCHHHHHH
Confidence 44566665 344443 4578999999999642222 23344443 4558888999988877777888889
Q ss_pred hcceEEEEeecC
Q 025927 187 VVDLVLIMSVNP 198 (246)
Q Consensus 187 ~vD~VLvMsV~P 198 (246)
.+|+|.||+=+=
T Consensus 160 ~~D~v~lMtYD~ 171 (298)
T cd06549 160 NADKLILMAYDE 171 (298)
T ss_pred hCCEEEEEEecc
Confidence 999999999983
No 171
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=90.01 E-value=1.4 Score=40.37 Aligned_cols=76 Identities=21% Similarity=0.340 Sum_probs=50.1
Q ss_pred EeccCcc---cchHHH----HhcCCCEEEEccCCcccc---cHHHHHHHHH----HcCCcEEEEEcCCCChH--------
Q 025927 122 LMIVEPE---QRVPDF----IKAGADIVSVHCEQSSTI---HLHRTLNQIK----DLGAKAGVVLNPATSLS-------- 179 (246)
Q Consensus 122 LMV~~P~---~~i~~~----~~agad~It~H~E~~~~~---~~~~~i~~Ik----~~G~k~GlAlnP~Tpve-------- 179 (246)
-|+.+|. ++++.+ .+.|-|-|-+.+|..... ....+++.+| +.|....+++.|.++..
T Consensus 80 ~~l~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~~~~~d~~~~~~fl~~lr~~l~~~~~~lsv~~~p~~~~~~~~~~~~~ 159 (313)
T cd02874 80 AVLSNPEARQRLINNILALAKKYGYDGVNIDFENVPPEDREAYTQFLRELSDRLHPAGYTLSTAVVPKTSADQFGNWSGA 159 (313)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHhCCCcEEEecccCCHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCccccccccccccc
Confidence 3455555 344433 357899999999963211 2344555544 45788888888876532
Q ss_pred -HHHHhhhhcceEEEEeec
Q 025927 180 -AIECVLDVVDLVLIMSVN 197 (246)
Q Consensus 180 -~l~~~l~~vD~VLvMsV~ 197 (246)
.+..+.+.+|+|.+|+-+
T Consensus 160 ~~~~~l~~~vD~v~lm~YD 178 (313)
T cd02874 160 YDYAAIGKIVDFVVLMTYD 178 (313)
T ss_pred cCHHHHHhhCCEEEEEEec
Confidence 356677789999999986
No 172
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=89.76 E-value=0.81 Score=41.73 Aligned_cols=162 Identities=17% Similarity=0.117 Sum_probs=95.3
Q ss_pred cEEeeeecccChhhHHHHHHHHHHcC--CCEEEeeecc-------CcccCCCCCCHHHHhhcccCCCCCeeEEEec--cC
Q 025927 58 IIVSPSILSANFAKLGEQVKAVELAG--CDWIHVDVMD-------GRFVPNITIGPLVVDALRPVTDLPLDVHLMI--VE 126 (246)
Q Consensus 58 ~~IsPSIl~aD~~~l~~~i~~l~~~g--~d~lHiDIMD-------G~FVpN~tfgp~~I~~ir~~t~~plDvHLMV--~~ 126 (246)
.-+.+||...|...+.+..+.+++++ +|.+=+.+-= ..+..+..+--++++++|+.+++|+-+=+-. ++
T Consensus 91 ~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~~pv~vKi~~~~~~ 170 (300)
T TIGR01037 91 TPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKTDVPVFAKLSPNVTD 170 (300)
T ss_pred CcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEECCCChhh
Confidence 35889999999999999999998763 7776665431 1122222233456777788778887776631 22
Q ss_pred cccchHHHHhcCCCEEEEcc---------CCc-----------cccc----HHHHHHHHHHcCCcEEEEEcCC-CChHHH
Q 025927 127 PEQRVPDFIKAGADIVSVHC---------EQS-----------STIH----LHRTLNQIKDLGAKAGVVLNPA-TSLSAI 181 (246)
Q Consensus 127 P~~~i~~~~~agad~It~H~---------E~~-----------~~~~----~~~~i~~Ik~~G~k~GlAlnP~-Tpve~l 181 (246)
...+.+.+.++|+|.|++|- +.. +... ..+.+.++++.- .+=|..+=+ +..++.
T Consensus 171 ~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~-~ipvi~~GGI~s~~da 249 (300)
T TIGR01037 171 ITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMV-DIPIIGVGGITSFEDA 249 (300)
T ss_pred HHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcC-CCCEEEECCCCCHHHH
Confidence 33456667789999999972 100 0000 125666676642 222333333 566777
Q ss_pred HHhhh-hcceEEEEeecCCCCCCcccHHHHHHH-HHHHHHHHhcCCC
Q 025927 182 ECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKI-SDLRRMCLEKGVN 226 (246)
Q Consensus 182 ~~~l~-~vD~VLvMsV~PGfgGQ~F~~~~l~KI-~~lr~l~~~~~~~ 226 (246)
.+++. -+|.|.+=+- --..|....|+ +.++++.+++|++
T Consensus 250 ~~~l~~GAd~V~igr~------~l~~p~~~~~i~~~l~~~~~~~g~~ 290 (300)
T TIGR01037 250 LEFLMAGASAVQVGTA------VYYRGFAFKKIIEGLIAFLKAEGFT 290 (300)
T ss_pred HHHHHcCCCceeecHH------HhcCchHHHHHHHHHHHHHHHcCCC
Confidence 77764 4887776321 11123344443 4567777777764
No 173
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=89.63 E-value=3.5 Score=37.82 Aligned_cols=121 Identities=22% Similarity=0.249 Sum_probs=72.5
Q ss_pred HHHHHHHHHHcCCCEEEeeeccCccc-----C--C-------------CCCCHHHHhhcccCC--CCCeeEEEecc----
Q 025927 72 LGEQVKAVELAGCDWIHVDVMDGRFV-----P--N-------------ITIGPLVVDALRPVT--DLPLDVHLMIV---- 125 (246)
Q Consensus 72 l~~~i~~l~~~g~d~lHiDIMDG~FV-----p--N-------------~tfgp~~I~~ir~~t--~~plDvHLMV~---- 125 (246)
+.+..+++.++|.|.+-+-.--|... | | ..|--++++++|+.. ++++-+-+=..
T Consensus 143 ~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~ 222 (327)
T cd02803 143 FAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVP 222 (327)
T ss_pred HHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCC
Confidence 33455677788999998887655432 2 1 122357899998865 45555544322
Q ss_pred ------CcccchHHHHhcCCCEEEEccCCcc---c---------ccHHHHHHHHHHcCCcEEEEEcCC-CChHHHHHhhh
Q 025927 126 ------EPEQRVPDFIKAGADIVSVHCEQSS---T---------IHLHRTLNQIKDLGAKAGVVLNPA-TSLSAIECVLD 186 (246)
Q Consensus 126 ------~P~~~i~~~~~agad~It~H~E~~~---~---------~~~~~~i~~Ik~~G~k~GlAlnP~-Tpve~l~~~l~ 186 (246)
+...+++.+.++|+|+|.+|.=... . ..-...++.+|+.- ++=|+.+-+ +..+..+++|.
T Consensus 223 ~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~-~iPVi~~Ggi~t~~~a~~~l~ 301 (327)
T cd02803 223 GGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAV-KIPVIAVGGIRDPEVAEEILA 301 (327)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHC-CCCEEEeCCCCCHHHHHHHHH
Confidence 1234567788899999998742110 0 11225666777642 333444444 45777888886
Q ss_pred h--cceEEE
Q 025927 187 V--VDLVLI 193 (246)
Q Consensus 187 ~--vD~VLv 193 (246)
. +|+|.+
T Consensus 302 ~g~aD~V~i 310 (327)
T cd02803 302 EGKADLVAL 310 (327)
T ss_pred CCCCCeeee
Confidence 5 887655
No 174
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=89.52 E-value=1.5 Score=40.46 Aligned_cols=75 Identities=9% Similarity=0.192 Sum_probs=50.1
Q ss_pred cHHHHHHHHHHc---CCcEEEEEcCCCChHHHHHhh-hhcceEEEEeecCCCCCCcccHHHHHHHHHHHHHHHhcCCCCe
Q 025927 153 HLHRTLNQIKDL---GAKAGVVLNPATSLSAIECVL-DVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPW 228 (246)
Q Consensus 153 ~~~~~i~~Ik~~---G~k~GlAlnP~Tpve~l~~~l-~~vD~VLvMsV~PGfgGQ~F~~~~l~KI~~lr~l~~~~~~~~~ 228 (246)
.+.+.++.+|+. +.++|+..+ .++.+...+ ..+|+|++ .+|-++.++++ +++.+ ....
T Consensus 173 ~~~~~v~~aR~~~~~~~~Igvsv~---tleea~~A~~~gaDyI~l---------D~~~~e~l~~~---~~~~~---~~i~ 234 (277)
T PRK08072 173 SITKAVTSVREKLGHMVKIEVETE---TEEQVREAVAAGADIIMF---------DNRTPDEIREF---VKLVP---SAIV 234 (277)
T ss_pred CHHHHHHHHHHhCCCCCEEEEEeC---CHHHHHHHHHcCCCEEEE---------CCCCHHHHHHH---HHhcC---CCce
Confidence 356677777766 467788775 456665555 45999988 13555555444 44332 2356
Q ss_pred EEEeCCCChhhhhhccc
Q 025927 229 IEVDGGVGPKNAYKVPN 245 (246)
Q Consensus 229 I~VDGGI~~e~i~~l~~ 245 (246)
+++=||||.+|++++.+
T Consensus 235 i~AiGGIt~~ni~~~a~ 251 (277)
T PRK08072 235 TEASGGITLENLPAYGG 251 (277)
T ss_pred EEEECCCCHHHHHHHHH
Confidence 88999999999998764
No 175
>cd03310 CIMS_like CIMS - Cobalamine-independent methonine synthase, or MetE. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers both the N-and C-terminal barrel, and some single-barrel sequences, mostly from Archaea. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains from both barrels contribute to the binding o
Probab=89.29 E-value=13 Score=33.75 Aligned_cols=143 Identities=18% Similarity=0.226 Sum_probs=76.2
Q ss_pred hHHHHHHHHHHcCCCEEEeeeccCcccCCCC---CCHHHHhhccc-C---CCCCeeEEEeccCcccchHHHHhcCCCEEE
Q 025927 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNIT---IGPLVVDALRP-V---TDLPLDVHLMIVEPEQRVPDFIKAGADIVS 143 (246)
Q Consensus 71 ~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~t---fgp~~I~~ir~-~---t~~plDvHLMV~~P~~~i~~~~~agad~It 143 (246)
.+.+++++|.++|++++.+| |-.+..+.. +..+.++.+-+ . .+...-+|+... ...+.+.+.|+|.++
T Consensus 152 ~~~~~~~~l~~~G~~~iqid--EP~l~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~lHic~~---~~~~~l~~~~vd~l~ 226 (321)
T cd03310 152 FLREQVKELKNRGIVVVQID--EPSLGAVGAGAFEDLEIVDAALEEVSLKSGGDVEVHLCAP---LDYEALLELGVDVIG 226 (321)
T ss_pred HHHHHHHHHHhcCCcEEEeC--CCccccccccccchHHHHHHHHHHHhhccCCceEEEECCC---CCHHHHHhCCCCEEE
Confidence 34578889999999999987 444444432 33344433322 1 233557787766 446788899999999
Q ss_pred EccCCcccccHHHHHHHHHHcC---CcEEEEE-cC----CCCh---HHHHHhhhhcceEE-----EEeecCCCCCCcc-c
Q 025927 144 VHCEQSSTIHLHRTLNQIKDLG---AKAGVVL-NP----ATSL---SAIECVLDVVDLVL-----IMSVNPGFGGQSF-I 206 (246)
Q Consensus 144 ~H~E~~~~~~~~~~i~~Ik~~G---~k~GlAl-nP----~Tpv---e~l~~~l~~vD~VL-----vMsV~PGfgGQ~F-~ 206 (246)
+-.-...... ..-+..+.+.| ...|+.+ +. .+.. +.++..+..+.... -..|.|.+|=... .
T Consensus 227 ~D~~~~~~~~-~~~l~~~~~~g~~~~~lg~gvid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vtpscgL~~~p~ 305 (321)
T cd03310 227 FDAAALPSKY-LEDLKKLLRIGVRTLILGLVVTDNEAKGRNAWKEIERLEKLVRRLEEPGEVLDEILYLTPDCGLAFLPP 305 (321)
T ss_pred EecccCcccc-hhHHHHHHhcCCceEEEEeeecCCcccCCCHHHHHHHHHHHHHHhccchhhhhhceeeCCCccCCCCCH
Confidence 8754211000 13445555554 2234433 22 2222 24555555554443 2567785543322 2
Q ss_pred HHHHHHHHHHHHH
Q 025927 207 ESQVKKISDLRRM 219 (246)
Q Consensus 207 ~~~l~KI~~lr~l 219 (246)
..+.+|++.+++.
T Consensus 306 ~~a~~kl~~l~~~ 318 (321)
T cd03310 306 QEARRKLALLAEA 318 (321)
T ss_pred HHHHHHHHHHHHH
Confidence 3455566655553
No 176
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=89.27 E-value=4.5 Score=37.75 Aligned_cols=162 Identities=16% Similarity=0.131 Sum_probs=88.5
Q ss_pred HHHHHHHHcCCCEEEe------eeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEEEccC
Q 025927 74 EQVKAVELAGCDWIHV------DVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCE 147 (246)
Q Consensus 74 ~~i~~l~~~g~d~lHi------DIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It~H~E 147 (246)
+|.+-.|++|+=.+-+ |+----=|- -.=+|+.|++|++..++|+--=.=..+ ..-++.+.++|+|+|- |
T Consensus 19 ~qa~~ae~aga~~v~~~~~~~~~~~~~~~v~-R~~~~~~I~~Ik~~V~iPVIGi~K~~~-~~Ea~~L~eaGvDiID---a 93 (283)
T cd04727 19 EQARIAEEAGAVAVMALERVPADIRAAGGVA-RMADPKMIKEIMDAVSIPVMAKVRIGH-FVEAQILEALGVDMID---E 93 (283)
T ss_pred HHHHHHHHcCceEEeeeccCchhhhhcCCee-ecCCHHHHHHHHHhCCCCeEEeeehhH-HHHHHHHHHcCCCEEe---c
Confidence 5666777777533322 332211111 133899999999988888654222222 4456788999999993 4
Q ss_pred CcccccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhhh-cceEEEEeecCCCCCC-------------------cccH
Q 025927 148 QSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV-VDLVLIMSVNPGFGGQ-------------------SFIE 207 (246)
Q Consensus 148 ~~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~~-vD~VLvMsV~PGfgGQ-------------------~F~~ 207 (246)
+.-......+++.+|..- . =+.++....+++-..-... +|+|= -|.+ ||.|. .+.+
T Consensus 94 T~r~rP~~~~~~~iK~~~-~-~l~MAD~stleEal~a~~~Gad~I~-TTl~-gyT~~~~~~~~~~~~i~~~i~~~~gyt~ 169 (283)
T cd04727 94 SEVLTPADEEHHIDKHKF-K-VPFVCGARNLGEALRRISEGAAMIR-TKGE-AGTGNVVEAVRHMRAVNGEIRKLQSMSE 169 (283)
T ss_pred cCCCCcHHHHHHHHHHHc-C-CcEEccCCCHHHHHHHHHCCCCEEE-ecCC-CCCCcHHHHHHHHHHHHHHHHHHhCCCH
Confidence 321122467888888642 2 2344445556544443333 77753 2222 44443 3444
Q ss_pred HHH-H-------HHHHHHHHHHhcCCCCeE-EEeCCC-Chhhhhhccc
Q 025927 208 SQV-K-------KISDLRRMCLEKGVNPWI-EVDGGV-GPKNAYKVPN 245 (246)
Q Consensus 208 ~~l-~-------KI~~lr~l~~~~~~~~~I-~VDGGI-~~e~i~~l~~ 245 (246)
++. . -+..++++....+. +.| -..||| ++++++++.+
T Consensus 170 ~t~~~~~~~~~~d~elLk~l~~~~~i-PVV~iAeGGI~Tpena~~v~e 216 (283)
T cd04727 170 EELYAVAKEIQAPYELVKETAKLGRL-PVVNFAAGGVATPADAALMMQ 216 (283)
T ss_pred HHHHhhhcccCCCHHHHHHHHHhcCC-CeEEEEeCCCCCHHHHHHHHH
Confidence 442 0 11233444333222 223 379999 9999988764
No 177
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=89.26 E-value=3.2 Score=38.15 Aligned_cols=167 Identities=22% Similarity=0.294 Sum_probs=109.8
Q ss_pred Eeeee--cccChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhc
Q 025927 60 VSPSI--LSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKA 137 (246)
Q Consensus 60 IsPSI--l~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~a 137 (246)
-|||- +..|+ +..+..+..+++|+..|=| +.|.+| |.-.++.++.+|..+++|+=++=-+-+|.+ |..-..+
T Consensus 55 aSPS~G~ir~d~-dp~~ia~~Ye~~GAa~iSV-LTd~~~---F~Gs~e~L~~v~~~v~~PvL~KDFiiD~yQ-I~~Ar~~ 128 (254)
T COG0134 55 ASPSKGLIREDF-DPVEIAKAYEEGGAAAISV-LTDPKY---FQGSFEDLRAVRAAVDLPVLRKDFIIDPYQ-IYEARAA 128 (254)
T ss_pred CCCCCCcccccC-CHHHHHHHHHHhCCeEEEE-ecCccc---cCCCHHHHHHHHHhcCCCeeeccCCCCHHH-HHHHHHc
Confidence 46776 45553 4445788889999999987 566666 556788999999989999877766667665 3344567
Q ss_pred CCCEEEEccCCcccccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhhhcceEEEEeecC-CCCCCcccHHHHHHHHHH
Q 025927 138 GADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNP-GFGGQSFIESQVKKISDL 216 (246)
Q Consensus 138 gad~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~~vD~VLvMsV~P-GfgGQ~F~~~~l~KI~~l 216 (246)
|||.|-+=+.......+.++.++.+++|+.+=+-++ ..++++..++ .+- -+..||- +...=.-..++.. +|
T Consensus 129 GADavLLI~~~L~~~~l~el~~~A~~LGm~~LVEVh---~~eEl~rAl~-~ga-~iIGINnRdL~tf~vdl~~t~---~l 200 (254)
T COG0134 129 GADAVLLIVAALDDEQLEELVDRAHELGMEVLVEVH---NEEELERALK-LGA-KIIGINNRDLTTLEVDLETTE---KL 200 (254)
T ss_pred CcccHHHHHHhcCHHHHHHHHHHHHHcCCeeEEEEC---CHHHHHHHHh-CCC-CEEEEeCCCcchheecHHHHH---HH
Confidence 999888877765455688999999999999988877 4455555554 333 2334443 2222233334433 33
Q ss_pred HHHHHhcCCCCeEEEeCCCC-hhhhhhc
Q 025927 217 RRMCLEKGVNPWIEVDGGVG-PKNAYKV 243 (246)
Q Consensus 217 r~l~~~~~~~~~I~VDGGI~-~e~i~~l 243 (246)
..++++ +..+-.-.||+ .+.+..+
T Consensus 201 a~~~p~---~~~~IsESGI~~~~dv~~l 225 (254)
T COG0134 201 APLIPK---DVILISESGISTPEDVRRL 225 (254)
T ss_pred HhhCCC---CcEEEecCCCCCHHHHHHH
Confidence 344433 34566788887 5555544
No 178
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=89.20 E-value=14 Score=37.11 Aligned_cols=167 Identities=15% Similarity=0.102 Sum_probs=91.8
Q ss_pred cCCCC--CcEEeeeecccChh-hHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcc
Q 025927 52 KFSKS--DIIVSPSILSANFA-KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPE 128 (246)
Q Consensus 52 ~~~~~--~~~IsPSIl~aD~~-~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~ 128 (246)
+.+.. .++|-.=|..+... .+.+..+++.+.|+|.| ||-=+...|+..-=.+.|+.+++.++.|+. +=+.+|.
T Consensus 144 ~i~~~~p~~~v~aEI~~a~~l~~i~~~A~~~~~~GADII--DIG~~st~p~~~~v~~~V~~l~~~~~~pIS--IDT~~~~ 219 (499)
T TIGR00284 144 KIPLKPPPLRVVAEIPPTVAEDGIEGLAARMERDGADMV--ALGTGSFDDDPDVVKEKVKTALDALDSPVI--ADTPTLD 219 (499)
T ss_pred CCCCCCCCeEEEEEEcCCcchHHHHHHHHHHHHCCCCEE--EECCCcCCCcHHHHHHHHHHHHhhCCCcEE--EeCCCHH
Confidence 34444 45666666555544 35677778888999986 444333344211112456666665555532 2333444
Q ss_pred cchHHHHhcCCCEEEEccCCcccccHHHHHHHHHHcCCcEEEEEcCC---CChHHHHHhhhhcce--EEEEeecCCCCCC
Q 025927 129 QRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPA---TSLSAIECVLDVVDL--VLIMSVNPGFGGQ 203 (246)
Q Consensus 129 ~~i~~~~~agad~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~---Tpve~l~~~l~~vD~--VLvMsV~PGfgGQ 203 (246)
. ++.-.++|+++|- -+.. ....+++..+++.|+.+ .+-|. ...+.++..++.+.- |-=.-++||++-+
T Consensus 220 v-~eaAL~aGAdiIN-sVs~---~~~d~~~~l~a~~g~~v--Vlm~~~~~~~~~~l~~~ie~a~~~Gi~~IIlDPglg~~ 292 (499)
T TIGR00284 220 E-LYEALKAGASGVI-MPDV---ENAVELASEKKLPEDAF--VVVPGNQPTNYEELAKAVKKLRTSGYSKVAADPSLSPP 292 (499)
T ss_pred H-HHHHHHcCCCEEE-ECCc---cchhHHHHHHHHcCCeE--EEEcCCCCchHHHHHHHHHHHHHCCCCcEEEeCCCCcc
Confidence 4 4455678999876 3332 23446777777777654 44343 333445444432111 1125679999755
Q ss_pred cccHHHHHHHHHHHHHHHhcCCCCeEEE
Q 025927 204 SFIESQVKKISDLRRMCLEKGVNPWIEV 231 (246)
Q Consensus 204 ~F~~~~l~KI~~lr~l~~~~~~~~~I~V 231 (246)
.+ ..++.|..++.+++..+....+.+
T Consensus 293 ~~--~l~~sL~~l~~~r~~~~~Pil~Gv 318 (499)
T TIGR00284 293 LL--GLLESIIRFRRASRLLNVPLVFGA 318 (499)
T ss_pred hH--HHHHHHHHHHHHHHhcCCcEEEee
Confidence 44 467777777776655565444443
No 179
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=89.14 E-value=7.1 Score=37.70 Aligned_cols=131 Identities=12% Similarity=0.232 Sum_probs=82.1
Q ss_pred ccChhhHHHHHHHHHHcCCCEEEeeeccCcccC---CCCCC---HHHHhhcccCCCCCeeEEEeccCcc----cchHHHH
Q 025927 66 SANFAKLGEQVKAVELAGCDWIHVDVMDGRFVP---NITIG---PLVVDALRPVTDLPLDVHLMIVEPE----QRVPDFI 135 (246)
Q Consensus 66 ~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVp---N~tfg---p~~I~~ir~~t~~plDvHLMV~~P~----~~i~~~~ 135 (246)
+-++.++-+|++.+.+.|+..+.+ .|.+|.. +..-. .+.++.++++.+. ..+.+...+|. .+++.+.
T Consensus 152 srs~e~Iv~Ei~~l~~~G~~ei~l--~~~~~~~yg~d~~~~~~l~~Ll~~l~~~~~~-~~ir~~~~~p~~i~~ell~~l~ 228 (418)
T PRK14336 152 SRSIAEIGCEVAELVRRGSREVVL--LGQNVDSYGHDLPEKPCLADLLSALHDIPGL-LRIRFLTSHPKDISQKLIDAMA 228 (418)
T ss_pred cCCHHHHHHHHHHHHHCCCeEEEE--EecCccccccCCCCcccHHHHHHHHHhcCCc-cEEEEeccChhhcCHHHHHHHH
Confidence 666788999999999999988875 5544421 11001 2355555554332 46788888885 4566666
Q ss_pred hc--CCCEEEEccCCcc------------cccHHHHHHHHHHc--CCcEE--EEEc-CCCChHHHHHhhhh-----cceE
Q 025927 136 KA--GADIVSVHCEQSS------------TIHLHRTLNQIKDL--GAKAG--VVLN-PATSLSAIECVLDV-----VDLV 191 (246)
Q Consensus 136 ~a--gad~It~H~E~~~------------~~~~~~~i~~Ik~~--G~k~G--lAln-P~Tpve~l~~~l~~-----vD~V 191 (246)
+. ++..+.+.+|+.+ ..+..+.++.+|+. |+.++ +.+. |+-..+.++..++. .|.+
T Consensus 229 ~~~~~~~~l~lglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~pgi~i~~d~IvGfPGET~edf~~tl~fi~~~~~~~~ 308 (418)
T PRK14336 229 HLPKVCRSLSLPVQAGDDTILAAMRRGYTNQQYRELVERLKTAMPDISLQTDLIVGFPSETEEQFNQSYKLMADIGYDAI 308 (418)
T ss_pred hcCccCCceecCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCEEEEEEEEECCCCCHHHHHHHHHHHHhcCCCEE
Confidence 64 4788888888641 22456778888888 77764 3333 66666666655442 4554
Q ss_pred --EEEeecCC
Q 025927 192 --LIMSVNPG 199 (246)
Q Consensus 192 --LvMsV~PG 199 (246)
...+-.||
T Consensus 309 ~v~~ysp~pG 318 (418)
T PRK14336 309 HVAAYSPRPQ 318 (418)
T ss_pred EeeecCCCCC
Confidence 44666677
No 180
>PRK06267 hypothetical protein; Provisional
Probab=89.06 E-value=10 Score=35.82 Aligned_cols=147 Identities=15% Similarity=0.122 Sum_probs=86.0
Q ss_pred ccChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHH----HHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCE
Q 025927 66 SANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPL----VVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADI 141 (246)
Q Consensus 66 ~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~----~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~ 141 (246)
..++.++.++++.+.+.|++.++ +.+|.- +..+ +++.++...+..+.+.+...++... .....+|.
T Consensus 62 ~~s~eeI~eea~~~~~~Gv~~~~--lsgG~~-----~~~~el~~i~e~I~~~~~~~~~~s~G~~d~~~~-~~~~l~Gv-- 131 (350)
T PRK06267 62 RRRVESILAEAILMKRIGWKLEF--ISGGYG-----YTTEEINDIAEMIAYIQGCKQYLNVGIIDFLNI-NLNEIEGV-- 131 (350)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEE--EecCCC-----CCHHHHHHHHHHHHHhhCCceEeecccCCHHHH-hhccccCc--
Confidence 35788899999999999998776 446632 3444 3444455444445566655565432 22233342
Q ss_pred EEEccCCc------------ccccHHHHHHHHHHcCCc--EEEEEcCCCChHHHHHhhh-----hcceEEEEeec--CC-
Q 025927 142 VSVHCEQS------------STIHLHRTLNQIKDLGAK--AGVVLNPATSLSAIECVLD-----VVDLVLIMSVN--PG- 199 (246)
Q Consensus 142 It~H~E~~------------~~~~~~~~i~~Ik~~G~k--~GlAlnP~Tpve~l~~~l~-----~vD~VLvMsV~--PG- 199 (246)
+.=.|+. +.++..+.++.++++|++ +|+.+.++-..+++...+. .+|.|-+.... ||
T Consensus 132 -~g~~ET~~~~~~~~i~~~~s~ed~~~~l~~ak~aGi~v~~g~IiGlgEt~ed~~~~l~~l~~l~~d~v~~~~L~P~pGT 210 (350)
T PRK06267 132 -VGAVETVNPKLHREICPGKPLDKIKEMLLKAKDLGLKTGITIILGLGETEDDIEKLLNLIEELDLDRITFYSLNPQKGT 210 (350)
T ss_pred -eeeeecCCHHHHHhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEeCCCCHHHHHHHHHHHHHcCCCEEEEEeeeECCCC
Confidence 2223321 123456788899999999 6677766666766666443 35766554444 45
Q ss_pred -CCCCc--ccHHHHHHHHHHHHHHHhc
Q 025927 200 -FGGQS--FIESQVKKISDLRRMCLEK 223 (246)
Q Consensus 200 -fgGQ~--F~~~~l~KI~~lr~l~~~~ 223 (246)
+.+++ =..+.++-|..+|-+++..
T Consensus 211 p~~~~~~~s~~e~lr~ia~~Rl~lP~~ 237 (350)
T PRK06267 211 IFENKPSVTTLEYMNWVSSVRLNFPKI 237 (350)
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHCCCC
Confidence 23322 2235666666677776643
No 181
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=89.00 E-value=9 Score=37.08 Aligned_cols=134 Identities=10% Similarity=0.166 Sum_probs=77.0
Q ss_pred ccChhhHHHHHHHHHHcCCCEEEe-eeccCccc-----CCCCCCHHHHhhcccCCCCCeeEEEeccCcccc----hHHHH
Q 025927 66 SANFAKLGEQVKAVELAGCDWIHV-DVMDGRFV-----PNITIGPLVVDALRPVTDLPLDVHLMIVEPEQR----VPDFI 135 (246)
Q Consensus 66 ~aD~~~l~~~i~~l~~~g~d~lHi-DIMDG~FV-----pN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~----i~~~~ 135 (246)
+-.+.++-+|++.+.+.|+..+.+ |.--+.|- ++..-=.+.++.|.+..+. ..+.+...+|... ++.+.
T Consensus 175 sr~~e~Iv~Ei~~l~~~g~~ei~l~d~~~~~y~~~~~~~~~~~l~~Ll~~l~~~~~~-~~ir~~~~~p~~~~~ell~~l~ 253 (444)
T PRK14325 175 SRPVDDVLAEVAQLAEQGVREITLLGQNVNAYRGEGPDGEIADFAELLRLVAAIDGI-ERIRYTTSHPRDFTDDLIEAYA 253 (444)
T ss_pred cCCHHHHHHHHHHHHHCCCcEEEEEeeccccccCCCCCCCcchHHHHHHHHHhcCCc-cEEEEccCCcccCCHHHHHHHH
Confidence 566788889999999889887753 22112221 1111113455555544332 2467777777754 44555
Q ss_pred hcC--CCEEEEccCCcc------------cccHHHHHHHHHHc--CCcEEEEEc---CCCChHHHHHhhhh-----cceE
Q 025927 136 KAG--ADIVSVHCEQSS------------TIHLHRTLNQIKDL--GAKAGVVLN---PATSLSAIECVLDV-----VDLV 191 (246)
Q Consensus 136 ~ag--ad~It~H~E~~~------------~~~~~~~i~~Ik~~--G~k~GlAln---P~Tpve~l~~~l~~-----vD~V 191 (246)
++| +.++.+-+|+.+ ..+..+.++.+|+. |+.++.-+= |+-..+.++..++. .|.+
T Consensus 254 ~~~~~~~~l~igiqSgs~~vLk~m~R~~~~~~~~~~i~~lr~~~~gi~v~~~~IvG~PgET~ed~~~tl~~i~~~~~~~~ 333 (444)
T PRK14325 254 DLPKLVPFLHLPVQSGSDRILKAMNRGHTALEYKSIIRKLRAARPDIAISSDFIVGFPGETDEDFEATMKLIEDVGFDQS 333 (444)
T ss_pred cCCcccCceeccCCcCCHHHHHhCCCCCCHHHHHHHHHHHHHHCCCCEEEeeEEEECCCCCHHHHHHHHHHHHhcCCCee
Confidence 554 778888888642 12356777788887 555544322 56556666655543 4554
Q ss_pred E--EEeecCCC
Q 025927 192 L--IMSVNPGF 200 (246)
Q Consensus 192 L--vMsV~PGf 200 (246)
. .++..||=
T Consensus 334 ~~~~~sp~pGT 344 (444)
T PRK14325 334 FSFIYSPRPGT 344 (444)
T ss_pred eeeeccCCCCC
Confidence 3 46667773
No 182
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=88.92 E-value=1.7 Score=39.22 Aligned_cols=71 Identities=18% Similarity=0.279 Sum_probs=36.1
Q ss_pred HHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhh-----cccC------CCCCeeEEEeccCcccchHHHHhcCCC
Q 025927 72 LGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDA-----LRPV------TDLPLDVHLMIVEPEQRVPDFIKAGAD 140 (246)
Q Consensus 72 l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~-----ir~~------t~~plDvHLMV~~P~~~i~~~~~agad 140 (246)
+.+.++.+.++|+|.+-+|-.=+.... .-++|+.-+. ++++ .+.++-+|..=.. ...++.+.+.|+|
T Consensus 146 ~~~~~~~~~eaG~d~i~i~dp~~~~~~-~~is~~~~~e~~~p~~k~i~~~i~~~~~~~~lH~cg~~-~~~~~~l~~~~~d 223 (306)
T cd00465 146 ILEYAKTLIEAGAKALQIHEPAFSQIN-SFLGPKMFKKFALPAYKKVAEYKAAGEVPIVHHSCYDA-ADLLEEMIQLGVD 223 (306)
T ss_pred HHHHHHHHHHhCCCEEEEecccccccC-CCCCHHHHHHHHHHHHHHHHHHHhhcCCceEEEECCCH-HHHHHHHHHhCcc
Confidence 446667788899999988743222110 0123333222 1221 1334445554332 3456666666666
Q ss_pred EEEE
Q 025927 141 IVSV 144 (246)
Q Consensus 141 ~It~ 144 (246)
.+++
T Consensus 224 ~~~~ 227 (306)
T cd00465 224 VISF 227 (306)
T ss_pred eEec
Confidence 6654
No 183
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=88.85 E-value=3.7 Score=39.19 Aligned_cols=160 Identities=15% Similarity=0.090 Sum_probs=86.5
Q ss_pred cEEeeeecccChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhc
Q 025927 58 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKA 137 (246)
Q Consensus 58 ~~IsPSIl~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~a 137 (246)
..|+++ . ..+.+.++++-++|++++|+-.-+..-- .+ -...+.+++.+. ..++.++|.+ .++.-.+.
T Consensus 150 ylIT~~--~---~~ll~~l~~al~~Gv~~VQLR~K~~~~~---~~-~~~a~~L~~l~~-~~~~~lIIND---~vdlAl~~ 216 (347)
T PRK02615 150 YLITSP--S---ENLLEVVEAALKGGVTLVQYRDKTADDR---QR-LEEAKKLKELCH-RYGALFIVND---RVDIALAV 216 (347)
T ss_pred EEEECC--c---hhHHHHHHHHHHcCCCEEEECCCCCCHH---HH-HHHHHHHHHHHH-HhCCeEEEeC---hHHHHHHc
Confidence 456666 2 3466778888899999999964432110 00 122333433321 2356677776 35556778
Q ss_pred CCCEEEEccCCcccccHHHHHHHHHH-cC--CcEEEEEcCCCChHHHHHhh-hhcceEEEEeecCCCCCCcccHHHHHHH
Q 025927 138 GADIVSVHCEQSSTIHLHRTLNQIKD-LG--AKAGVVLNPATSLSAIECVL-DVVDLVLIMSVNPGFGGQSFIESQVKKI 213 (246)
Q Consensus 138 gad~It~H~E~~~~~~~~~~i~~Ik~-~G--~k~GlAlnP~Tpve~l~~~l-~~vD~VLvMsV~PGfgGQ~F~~~~l~KI 213 (246)
|+|.|++-.+. -+ +...|+ .| ..+|+..+ + .+++..-. .-+|+|.+=.|-|--.-..-.+-.++.+
T Consensus 217 ~aDGVHLgq~d----l~---~~~aR~llg~~~iIG~S~H--s-~~e~~~A~~~GaDYI~lGPvf~T~tKp~~~~~Gle~l 286 (347)
T PRK02615 217 DADGVHLGQED----LP---LAVARQLLGPEKIIGRSTT--N-PEEMAKAIAEGADYIGVGPVFPTPTKPGKAPAGLEYL 286 (347)
T ss_pred CCCEEEeChhh----cC---HHHHHHhcCCCCEEEEecC--C-HHHHHHHHHcCCCEEEECCCcCCCCCCCCCCCCHHHH
Confidence 89977654331 11 122233 33 44565553 4 55555533 4799988754433110000112335555
Q ss_pred HHHHHHHHhcCCCCeEEEeCCCChhhhhhccc
Q 025927 214 SDLRRMCLEKGVNPWIEVDGGVGPKNAYKVPN 245 (246)
Q Consensus 214 ~~lr~l~~~~~~~~~I~VDGGI~~e~i~~l~~ 245 (246)
+++.+.. +..+..=||||.+|+.++.+
T Consensus 287 ~~~~~~~-----~iPv~AiGGI~~~ni~~l~~ 313 (347)
T PRK02615 287 KYAAKEA-----PIPWFAIGGIDKSNIPEVLQ 313 (347)
T ss_pred HHHHHhC-----CCCEEEECCCCHHHHHHHHH
Confidence 5555433 23455569999999988753
No 184
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=88.84 E-value=7.3 Score=37.87 Aligned_cols=133 Identities=14% Similarity=0.236 Sum_probs=75.6
Q ss_pred ccChhhHHHHHHHHHHcCCCEEEe---eecc-Cccc----CCC----CCCHHHHhhcccCCCCCeeEEEeccCccc----
Q 025927 66 SANFAKLGEQVKAVELAGCDWIHV---DVMD-GRFV----PNI----TIGPLVVDALRPVTDLPLDVHLMIVEPEQ---- 129 (246)
Q Consensus 66 ~aD~~~l~~~i~~l~~~g~d~lHi---DIMD-G~FV----pN~----tfgp~~I~~ir~~t~~plDvHLMV~~P~~---- 129 (246)
+-.+.++-+|++.+.+.|+..+.+ |+.+ |... |+. .| .+.++.|++..++ ..+.+...+|..
T Consensus 176 sr~~e~V~~Ei~~l~~~g~kei~l~~~~~~~yg~d~~~~~p~~~~~~~l-~~Ll~~i~~~~~~-~rir~~~~~p~~~~~e 253 (448)
T PRK14333 176 SRTPEAIRAEIEELAAQGYKEITLLGQNIDAYGRDLPGTTPEGRHQHTL-TDLLYYIHDVEGI-ERIRFATSHPRYFTER 253 (448)
T ss_pred ccCHHHHHHHHHHHHHCCCcEEEEEecccchhcCCCCCccccccccccH-HHHHHHHHhcCCC-eEEEECCCChhhhhHH
Confidence 567788999999998889887754 1211 1111 111 11 2334455554333 256777778854
Q ss_pred chHHHHhc--CCCEEEEccCCcc------------cccHHHHHHHHHHc--CCcEEEEE--c-CCCChHHHHHhhhh---
Q 025927 130 RVPDFIKA--GADIVSVHCEQSS------------TIHLHRTLNQIKDL--GAKAGVVL--N-PATSLSAIECVLDV--- 187 (246)
Q Consensus 130 ~i~~~~~a--gad~It~H~E~~~------------~~~~~~~i~~Ik~~--G~k~GlAl--n-P~Tpve~l~~~l~~--- 187 (246)
+++.+.+. ++..+.+-+|+.+ .++..+.++.+|+. |+.++.-+ . |+-..+.++..++.
T Consensus 254 li~~~~~~~~~~~~l~igiQSgsd~vLk~m~R~~t~e~~~~~i~~lr~~~p~i~i~~d~IvGfPgET~edf~~tl~~l~~ 333 (448)
T PRK14333 254 LIKACAELPKVCEHFHIPFQSGDNEILKAMARGYTHEKYRRIIDKIREYMPDASISADAIVGFPGETEAQFENTLKLVEE 333 (448)
T ss_pred HHHHHhcCCcccccccCCCccCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCcEEEeeEEEECCCCCHHHHHHHHHHHHH
Confidence 45555554 4677777778642 12355678888888 54444322 2 66666666554432
Q ss_pred --cceE--EEEeecCCC
Q 025927 188 --VDLV--LIMSVNPGF 200 (246)
Q Consensus 188 --vD~V--LvMsV~PGf 200 (246)
.|.+ ...+..||-
T Consensus 334 ~~~~~~~~~~~sp~pGT 350 (448)
T PRK14333 334 IGFDQLNTAAYSPRPGT 350 (448)
T ss_pred cCCCEEeeeeeecCCCC
Confidence 4444 446667773
No 185
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=88.80 E-value=7.6 Score=35.31 Aligned_cols=161 Identities=19% Similarity=0.250 Sum_probs=107.9
Q ss_pred HHHHHHHHcCCCEEEeeeccCcccCC-CCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEEEccCCc---
Q 025927 74 EQVKAVELAGCDWIHVDVMDGRFVPN-ITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS--- 149 (246)
Q Consensus 74 ~~i~~l~~~g~d~lHiDIMDG~FVpN-~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It~H~E~~--- 149 (246)
+-....+++|+|.|=+=.- |. =-+-.+.+..|++....+ ..|-..--+.+++.-.+..++++|+=+|.-
T Consensus 25 ~aA~~a~~aGAdgITvHlR-----eDrRHI~d~Dv~~L~~~~~~~--lNlE~a~t~em~~ia~~~kP~~vtLVPEkr~E~ 97 (234)
T cd00003 25 EAALLAEKAGADGITVHLR-----EDRRHIQDRDVRLLRELVRTE--LNLEMAPTEEMLEIALEVKPHQVTLVPEKREEL 97 (234)
T ss_pred HHHHHHHHcCCCEEEecCC-----CCcCcCCHHHHHHHHHHcCCC--EEeccCCCHHHHHHHHHCCCCEEEECCCCCCCc
Confidence 4456678899998755322 22 244567788888865544 444444455777777888999999999841
Q ss_pred cc----------ccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhh-hcceEEEEeecCCCC-CCcccHHHHHHHHHHH
Q 025927 150 ST----------IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFG-GQSFIESQVKKISDLR 217 (246)
Q Consensus 150 ~~----------~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~-~vD~VLvMsV~PGfg-GQ~F~~~~l~KI~~lr 217 (246)
++ ..+..+++.+|+.|+++.|-+.|+ .+.++.-.. -+|.|-+-|-.=.-+ ++.-...-++++...-
T Consensus 98 TTegGldv~~~~~~l~~~i~~l~~~gI~VSLFiDPd--~~qi~~A~~~GAd~VELhTG~Ya~a~~~~~~~~el~~i~~aa 175 (234)
T cd00003 98 TTEGGLDVAGQAEKLKPIIERLKDAGIRVSLFIDPD--PEQIEAAKEVGADRVELHTGPYANAYDKAEREAELERIAKAA 175 (234)
T ss_pred cCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeCCC--HHHHHHHHHhCcCEEEEechhhhcCCCchhHHHHHHHHHHHH
Confidence 11 136788999999999999999998 333333222 589888876432111 2222244588888887
Q ss_pred HHHHhcCCCCeEEEeCCCChhhhhhccc
Q 025927 218 RMCLEKGVNPWIEVDGGVGPKNAYKVPN 245 (246)
Q Consensus 218 ~l~~~~~~~~~I~VDGGI~~e~i~~l~~ 245 (246)
++..+.|+ .+..=.|+|.+|++.+.+
T Consensus 176 ~~a~~~GL--~VnAGHgLny~Nv~~i~~ 201 (234)
T cd00003 176 KLARELGL--GVNAGHGLNYENVKPIAK 201 (234)
T ss_pred HHHHHcCC--EEecCCCCCHHHHHHHHh
Confidence 77766654 677788999999987754
No 186
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=88.79 E-value=2.1 Score=39.49 Aligned_cols=78 Identities=14% Similarity=0.216 Sum_probs=49.4
Q ss_pred cHHHHHHHHHHc-C--CcEEEEEcCCCChHHHHHhhhh-cceEEEEeecCCCCCCcccHHHHHHHHHHHHHHHhcCCCCe
Q 025927 153 HLHRTLNQIKDL-G--AKAGVVLNPATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPW 228 (246)
Q Consensus 153 ~~~~~i~~Ik~~-G--~k~GlAlnP~Tpve~l~~~l~~-vD~VLvMsV~PGfgGQ~F~~~~l~KI~~lr~l~~~~~~~~~ 228 (246)
.+...++.+|+. . .+ +.+-.+ .+|+....++. +|.|++ .+|.++.++++ .+++.....+..
T Consensus 167 ~i~~~v~~~k~~~p~~~~--I~VEv~-tleea~~A~~~GaDiI~L---------Dn~~~e~l~~~---v~~~~~~~~~~~ 231 (273)
T PRK05848 167 DLKEFIQHARKNIPFTAK--IEIECE-SLEEAKNAMNAGADIVMC---------DNMSVEEIKEV---VAYRNANYPHVL 231 (273)
T ss_pred cHHHHHHHHHHhCCCCce--EEEEeC-CHHHHHHHHHcCCCEEEE---------CCCCHHHHHHH---HHHhhccCCCeE
Confidence 456778888764 2 33 444433 56666666655 898773 23455555444 444444334578
Q ss_pred EEEeCCCChhhhhhccc
Q 025927 229 IEVDGGVGPKNAYKVPN 245 (246)
Q Consensus 229 I~VDGGI~~e~i~~l~~ 245 (246)
|++=||||++|++++.+
T Consensus 232 ieAsGgIt~~ni~~ya~ 248 (273)
T PRK05848 232 LEASGNITLENINAYAK 248 (273)
T ss_pred EEEECCCCHHHHHHHHH
Confidence 99999999999998764
No 187
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=88.75 E-value=3.4 Score=38.79 Aligned_cols=113 Identities=16% Similarity=0.202 Sum_probs=69.0
Q ss_pred eeEEEeccCccc----chHHHHhcCCCEEEEccCCcc------------cccHHHHHHHHHHcCCc-EEEE--Ec-CCCC
Q 025927 118 LDVHLMIVEPEQ----RVPDFIKAGADIVSVHCEQSS------------TIHLHRTLNQIKDLGAK-AGVV--LN-PATS 177 (246)
Q Consensus 118 lDvHLMV~~P~~----~i~~~~~agad~It~H~E~~~------------~~~~~~~i~~Ik~~G~k-~GlA--ln-P~Tp 177 (246)
.++-+-+ ||.. .++.+.++|+++|++=+|+.. .++..+.++.+|+.|++ +++- +. |+..
T Consensus 87 ~eitie~-np~~lt~e~l~~l~~~Gv~risiGvqS~~~~~l~~lgR~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt 165 (360)
T TIGR00539 87 CEITTEA-NPELITAEWCKGLKGAGINRLSLGVQSFRDDKLLFLGRQHSAKNIAPAIETALKSGIENISLDLMYGLPLQT 165 (360)
T ss_pred CEEEEEe-CCCCCCHHHHHHHHHcCCCEEEEecccCChHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEeccCCCCCCC
Confidence 3444433 6764 577888999999999998652 12356788888999985 5653 33 5666
Q ss_pred hHHHHHhhhh-----cceEEE--EeecCC--CCCC----cccHHHHHHHHHHHHHHHhcCCCCeEEEe
Q 025927 178 LSAIECVLDV-----VDLVLI--MSVNPG--FGGQ----SFIESQVKKISDLRRMCLEKGVNPWIEVD 232 (246)
Q Consensus 178 ve~l~~~l~~-----vD~VLv--MsV~PG--fgGQ----~F~~~~l~KI~~lr~l~~~~~~~~~I~VD 232 (246)
.+.+..-++. +|.|-+ +++.|| +..+ +-.+...+-...+++.+.++|+. ..+++
T Consensus 166 ~~~~~~~l~~~~~l~~~~is~y~l~~~~gT~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~-~yei~ 232 (360)
T TIGR00539 166 LNSLKEELKLAKELPINHLSAYALSVEPNTNFEKNAKKLPDDDSCAHFDEVVREILEGFGFK-QYEVS 232 (360)
T ss_pred HHHHHHHHHHHHccCCCEEEeecceEcCCChhhhhhhcCcCHHHHHHHHHHHHHHHHHcCCc-eeehh
Confidence 6666555543 565544 677787 3322 11222333445556777777775 34444
No 188
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=88.67 E-value=6.2 Score=34.35 Aligned_cols=163 Identities=15% Similarity=0.183 Sum_probs=96.9
Q ss_pred HHHHHHHHcCCCEEEeeeccCcccCCCCCC----HHHHhhcccCCCCCeeEEEeccCccc-chHH---HHhcCCCEEEEc
Q 025927 74 EQVKAVELAGCDWIHVDVMDGRFVPNITIG----PLVVDALRPVTDLPLDVHLMIVEPEQ-RVPD---FIKAGADIVSVH 145 (246)
Q Consensus 74 ~~i~~l~~~g~d~lHiDIMDG~FVpN~tfg----p~~I~~ir~~t~~plDvHLMV~~P~~-~i~~---~~~agad~It~H 145 (246)
+-++.+...|+|++=+|.-||.=...-... ...+..++........+-.=|..++. ++.. ..+.|++.|.+.
T Consensus 12 ~~~~~a~~~g~D~vilDlEd~~~~~~K~~ar~~~~~~~~~~~~~~~~~~~~~VRvn~~~~~~~~~Dl~~l~~g~~gI~lP 91 (221)
T PF03328_consen 12 KMLEKAAASGADFVILDLEDGVPPDEKDEAREDLAEALRSIRAARAAGSEIIVRVNSLDSPHIERDLEALDAGADGIVLP 91 (221)
T ss_dssp HHHHHHHTTCSSEEEEESSTTSSGGGHHHHHHHHHHHHHHHHHHTTSSSEEEEE-SSTTCHHHHHHHHHHHTTSSEEEET
T ss_pred HHHHHHHhcCCCEEEEeCcccCCcccchhhHHHHHHHHHhhcccccccccceecCCCCCcchhhhhhhhcccCCCeeecc
Confidence 446667789999999999998610000111 13344443322333445555555443 5666 888999987776
Q ss_pred -cCCcccccHHHHHHHHHHcC---------CcEEEEEcCCCChHHHHHhh--hhcceEEE----EeecCCCCCCcccHHH
Q 025927 146 -CEQSSTIHLHRTLNQIKDLG---------AKAGVVLNPATSLSAIECVL--DVVDLVLI----MSVNPGFGGQSFIESQ 209 (246)
Q Consensus 146 -~E~~~~~~~~~~i~~Ik~~G---------~k~GlAlnP~Tpve~l~~~l--~~vD~VLv----MsV~PGfgGQ~F~~~~ 209 (246)
+|+ ..++..+.+.++..- .+..+.|--...++.+++++ +.+|.+.+ ++.+=|..++.-.++.
T Consensus 92 ~ves--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~IET~~gv~~~~eI~a~~~v~~l~~G~~Dls~~lG~~~~~~~~~~ 169 (221)
T PF03328_consen 92 KVES--AEDARQAVAALRYPPAGRRGANGSTKIIPMIETPEGVENLEEIAAVPGVDGLFFGPADLSASLGIPGQPDHPEV 169 (221)
T ss_dssp T--S--HHHHHHHHHHHSHTTTCTTTHHCHSEEEEEE-SHHHHHTHHHHHTSTTEEEEEE-HHHHHHHTTTTTSTTSHHH
T ss_pred ccCc--HHHHHHHHHHHhhcccccccccCceEEEEeeccHHHHhCHHhhcccCCeeEEEeCcHHHHhhhccCCCCcchHH
Confidence 563 456777777777542 33444443334457788876 23555555 4444588888888888
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEeC-CCChhhhh
Q 025927 210 VKKISDLRRMCLEKGVNPWIEVDG-GVGPKNAY 241 (246)
Q Consensus 210 l~KI~~lr~l~~~~~~~~~I~VDG-GI~~e~i~ 241 (246)
..-.+++.....+.|.. .+|| -.+.++..
T Consensus 170 ~~a~~~v~~aa~a~g~~---~i~~~~~~~~d~~ 199 (221)
T PF03328_consen 170 LEARSKVVLAARAAGKP---AIDGVFPDFEDAE 199 (221)
T ss_dssp HHHHHHHHHHHHHTTEE---EEEEEESSSSHHH
T ss_pred HHHHHHHHHHHHHcCCC---eEEEeeCCHHHHH
Confidence 88888887777777642 4676 33444443
No 189
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=88.61 E-value=11 Score=30.30 Aligned_cols=86 Identities=19% Similarity=0.173 Sum_probs=55.1
Q ss_pred CcEEeeeecccChhhHHH-HHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCC-CCCeeEEEeccCcccchHH-
Q 025927 57 DIIVSPSILSANFAKLGE-QVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVT-DLPLDVHLMIVEPEQRVPD- 133 (246)
Q Consensus 57 ~~~IsPSIl~aD~~~l~~-~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t-~~plDvHLMV~~P~~~i~~- 133 (246)
.+.+..+++..+.....+ ..+.+.++|+|++|+..-++.. ..+-.++++++++.. ++++-+=+-... ...+.
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v~l~~~~~~~---~~~~~~~~~~i~~~~~~~~v~~~~~~~~--~~~~~~ 131 (200)
T cd04722 57 DLPLGVQLAINDAAAAVDIAAAAARAAGADGVEIHGAVGYL---AREDLELIRELREAVPDVKVVVKLSPTG--ELAAAA 131 (200)
T ss_pred CCcEEEEEccCCchhhhhHHHHHHHHcCCCEEEEeccCCcH---HHHHHHHHHHHHHhcCCceEEEEECCCC--ccchhh
Confidence 456777888777655432 2467888999999999888643 234466788888764 444333221112 22222
Q ss_pred HHhcCCCEEEEccC
Q 025927 134 FIKAGADIVSVHCE 147 (246)
Q Consensus 134 ~~~agad~It~H~E 147 (246)
+.+.|+|++.++.-
T Consensus 132 ~~~~g~d~i~~~~~ 145 (200)
T cd04722 132 AEEAGVDEVGLGNG 145 (200)
T ss_pred HHHcCCCEEEEcCC
Confidence 67889999999864
No 190
>PRK04326 methionine synthase; Provisional
Probab=88.60 E-value=6.7 Score=36.22 Aligned_cols=138 Identities=18% Similarity=0.327 Sum_probs=77.5
Q ss_pred hHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHH----hhcccC---CCCCeeEEEeccCcccchHHHHhcCCCEEE
Q 025927 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVV----DALRPV---TDLPLDVHLMIVEPEQRVPDFIKAGADIVS 143 (246)
Q Consensus 71 ~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I----~~ir~~---t~~plDvHLMV~~P~~~i~~~~~agad~It 143 (246)
.+.++++.|.++|++++.+|= |.++..+... +.+++. .+..+-+|..-.+....++.+.++++|.++
T Consensus 162 ~~~~~i~~l~~~G~~~iqidE------P~l~~~~~~~~~~~~~l~~~~~~~~~~v~lH~C~G~~~~~~~~l~~~~vd~i~ 235 (330)
T PRK04326 162 VINEEIKNLVEAGAKYIQIDE------PALATHPEDVEIAVEALNRIVKGINAKLGLHVCYGDYSRIAPYILEFPVDQFD 235 (330)
T ss_pred HHHHHHHHHHHCCCCEEEecC------chhhcCHHHHHHHHHHHHHHHhCCCCEEEEEEeCCCcHHHHHHHHhCCCCEEE
Confidence 456888999999999999985 3333334332 333332 134556777766766678889999999998
Q ss_pred EccCCcccccHHHHHHHHHHc--CCcE--EEEEcCCCC-hHHHHHhhh----hcceEE--EEeecCC--CCCCcccHHHH
Q 025927 144 VHCEQSSTIHLHRTLNQIKDL--GAKA--GVVLNPATS-LSAIECVLD----VVDLVL--IMSVNPG--FGGQSFIESQV 210 (246)
Q Consensus 144 ~H~E~~~~~~~~~~i~~Ik~~--G~k~--GlAlnP~Tp-ve~l~~~l~----~vD~VL--vMsV~PG--fgGQ~F~~~~l 210 (246)
|-.-. .. ...+..+++. |..+ |++ ++.++ ++..+.+.+ .++.+- -+.+.|+ ++..+ .+...
T Consensus 236 ~d~~~---~~-~~~l~~~~~~~~~~~l~~Gvv-~~~~~~~~~~e~v~~~v~~~~~~~~~~~~~lsp~Cgl~~~~-~~~a~ 309 (330)
T PRK04326 236 LEFAN---GN-YKLLDLLKEYGFDKELGLGVI-DVHSARVESVEEIKEAIKKGLEYVPPEKLYINPDCGLKLLP-REIAY 309 (330)
T ss_pred EEeCC---CC-chhHHHhhccCCCCeEEeEEE-eCCCCCCCCHHHHHHHHHHHHHhCChhhEEECCCCCCCcCC-HHHHH
Confidence 86531 11 1245556665 5444 444 33332 222222221 122220 1234564 44433 46677
Q ss_pred HHHHHHHHHH
Q 025927 211 KKISDLRRMC 220 (246)
Q Consensus 211 ~KI~~lr~l~ 220 (246)
+|++.+.+..
T Consensus 310 ~kl~~l~~~a 319 (330)
T PRK04326 310 QKLVNMVKAT 319 (330)
T ss_pred HHHHHHHHHH
Confidence 8887776654
No 191
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=88.57 E-value=8.2 Score=35.62 Aligned_cols=170 Identities=15% Similarity=0.174 Sum_probs=95.2
Q ss_pred ccChhhHHHHHHHHHHcCCCEEEeeeccCcc--cCCC-CCCHHHHhhcccCCC-CCeeEEEeccCcccchHHHHhcCCCE
Q 025927 66 SANFAKLGEQVKAVELAGCDWIHVDVMDGRF--VPNI-TIGPLVVDALRPVTD-LPLDVHLMIVEPEQRVPDFIKAGADI 141 (246)
Q Consensus 66 ~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~F--VpN~-tfgp~~I~~ir~~t~-~plDvHLMV~~P~~~i~~~~~agad~ 141 (246)
+.|+.-+.--++..++.+...| +-+.-++. .+.+ .| ...++++.+..+ .|+-+||==..+...++..++.|.+.
T Consensus 23 ~~n~e~~~avi~aAe~~~~PvI-l~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~vpv~lhlDH~~~~e~i~~ai~~Gf~s 100 (282)
T TIGR01859 23 FNNLEWTQAILEAAEEENSPVI-IQVSEGAIKYMGGYKMA-VAMVKTLIERMSIVPVALHLDHGSSYESCIKAIKAGFSS 100 (282)
T ss_pred ECCHHHHHHHHHHHHHhCCCEE-EEcCcchhhccCcHHHH-HHHHHHHHHHCCCCeEEEECCCCCCHHHHHHHHHcCCCE
Confidence 3455556667777777766644 22322221 1111 12 223444444456 89999994444666777888889887
Q ss_pred EEEccCCcccc----cHHHHHHHHHHcCCcEEEEEcC--------------CCChHHHHHhhh--hcceEEE--EeecCC
Q 025927 142 VSVHCEQSSTI----HLHRTLNQIKDLGAKAGVVLNP--------------ATSLSAIECVLD--VVDLVLI--MSVNPG 199 (246)
Q Consensus 142 It~H~E~~~~~----~~~~~i~~Ik~~G~k~GlAlnP--------------~Tpve~l~~~l~--~vD~VLv--MsV~PG 199 (246)
|-+=.-....+ ...++.+..++.|+.+-..|.- .|.+++..++.. .+|++-+ =++-+=
T Consensus 101 Vmid~s~l~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~~~~~t~~eea~~f~~~tgvD~Lavs~Gt~hg~ 180 (282)
T TIGR01859 101 VMIDGSHLPFEENLALTKKVVEIAHAKGVSVEAELGTLGGIEDGVDEKEAELADPDEAEQFVKETGVDYLAAAIGTSHGK 180 (282)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCccccccccccccCCHHHHHHHHHHHCcCEEeeccCccccc
Confidence 65432111111 1335556667778655433332 467888888875 5998653 111111
Q ss_pred CCC-CcccHHHHHHHHHHHHHHHhcCCCCeEEEeC--CCChhhhhhccc
Q 025927 200 FGG-QSFIESQVKKISDLRRMCLEKGVNPWIEVDG--GVGPKNAYKVPN 245 (246)
Q Consensus 200 fgG-Q~F~~~~l~KI~~lr~l~~~~~~~~~I~VDG--GI~~e~i~~l~~ 245 (246)
|.+ -++. ++.++++++.. +.-+..=| ||+.++++++++
T Consensus 181 ~~~~~~l~---~e~L~~i~~~~-----~iPlv~hGgSGi~~e~i~~~i~ 221 (282)
T TIGR01859 181 YKGEPGLD---FERLKEIKELT-----NIPLVLHGASGIPEEQIKKAIK 221 (282)
T ss_pred cCCCCccC---HHHHHHHHHHh-----CCCEEEECCCCCCHHHHHHHHH
Confidence 222 2233 44455555443 24577889 999999988764
No 192
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=88.55 E-value=9.5 Score=35.08 Aligned_cols=119 Identities=14% Similarity=0.166 Sum_probs=77.7
Q ss_pred CCCCeeEEEeccCcccchHHHH---hc---CCCEEEEccCC--------c--ccccHHHHHHHHHHc-CCcEEEEEcCCC
Q 025927 114 TDLPLDVHLMIVEPEQRVPDFI---KA---GADIVSVHCEQ--------S--STIHLHRTLNQIKDL-GAKAGVVLNPAT 176 (246)
Q Consensus 114 t~~plDvHLMV~~P~~~i~~~~---~a---gad~It~H~E~--------~--~~~~~~~~i~~Ik~~-G~k~GlAlnP~T 176 (246)
.+.|+-+.++-. |+.|++.+. +. |+|.|-+-+=. . ..+.+.++++.+|+. .+-+.+=|.|++
T Consensus 90 ~~~pvivsi~g~-~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v~~~~~iPv~vKl~p~~ 168 (294)
T cd04741 90 SAKPFFISVTGS-AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKAAYSIPVGVKTPPYT 168 (294)
T ss_pred cCCeEEEECCCC-HHHHHHHHHHHHhhccccccEEEEECCCCCCCCcccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 356888888877 888876543 32 58887774321 0 023366778888865 678899999999
Q ss_pred ChHHHHHhhh-------hcceEEE-------EeecC--------------CCCCCcccHHHHHHHHHHHHHHHhcCCCCe
Q 025927 177 SLSAIECVLD-------VVDLVLI-------MSVNP--------------GFGGQSFIESQVKKISDLRRMCLEKGVNPW 228 (246)
Q Consensus 177 pve~l~~~l~-------~vD~VLv-------MsV~P--------------GfgGQ~F~~~~l~KI~~lr~l~~~~~~~~~ 228 (246)
+.+.+..+.+ -+|.|.+ |.+++ |.+|....+..++.|+++++..+ .++.
T Consensus 169 ~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~~~~~---~~ip 245 (294)
T cd04741 169 DPAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRRLLP---SEIQ 245 (294)
T ss_pred CHHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHHHhcC---CCCC
Confidence 8766666554 2454553 11221 34566678889998888877753 2356
Q ss_pred EEEeCCCC
Q 025927 229 IEVDGGVG 236 (246)
Q Consensus 229 I~VDGGI~ 236 (246)
|-.=|||.
T Consensus 246 Iig~GGI~ 253 (294)
T cd04741 246 IIGVGGVL 253 (294)
T ss_pred EEEeCCCC
Confidence 77778885
No 193
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=88.53 E-value=23 Score=34.40 Aligned_cols=157 Identities=14% Similarity=0.220 Sum_probs=89.3
Q ss_pred hhHHHHHHHHHHc---CCCEEEeeeccCcccCCCCCCHHHHhhc----ccCCCC--CeeEEEeccCcc----cchHHHHh
Q 025927 70 AKLGEQVKAVELA---GCDWIHVDVMDGRFVPNITIGPLVVDAL----RPVTDL--PLDVHLMIVEPE----QRVPDFIK 136 (246)
Q Consensus 70 ~~l~~~i~~l~~~---g~d~lHiDIMDG~FVpN~tfgp~~I~~i----r~~t~~--plDvHLMV~~P~----~~i~~~~~ 136 (246)
..|.+|++.+.+. +...-++-+.+|+. ..+.++.+..| ++..++ ..++-+- .||. ..++.+.+
T Consensus 84 ~~L~~Ei~~~~~~~~~~~~v~~i~~gGGtP---s~l~~~~l~~ll~~l~~~~~~~~~~e~tie-~np~~lt~e~l~~l~~ 159 (453)
T PRK09249 84 DALEKEIALVAALLGPGRPVSQLHWGGGTP---TFLSPEQLRRLMALLREHFNFAPDAEISIE-IDPRELDLEMLDALRE 159 (453)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEEECCccc---ccCCHHHHHHHHHHHHHhCCCCCCCEEEEE-ecCCcCCHHHHHHHHH
Confidence 4566677655432 33445666777764 22445555554 433222 1233333 3665 46778899
Q ss_pred cCCCEEEEccCCcc------------cccHHHHHHHHHHcCC-cEEEEE--c-CCCChHHHHHhhhh-----cceEEEEe
Q 025927 137 AGADIVSVHCEQSS------------TIHLHRTLNQIKDLGA-KAGVVL--N-PATSLSAIECVLDV-----VDLVLIMS 195 (246)
Q Consensus 137 agad~It~H~E~~~------------~~~~~~~i~~Ik~~G~-k~GlAl--n-P~Tpve~l~~~l~~-----vD~VLvMs 195 (246)
+|++.|++=+|+.. ..+..+.++.+|+.|+ .+++-+ . |+...+.++..++. +|.|-+-.
T Consensus 160 aG~~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~e~~~~~l~~~~~l~~~~i~~y~ 239 (453)
T PRK09249 160 LGFNRLSLGVQDFDPEVQKAVNRIQPFEFTFALVEAARELGFTSINIDLIYGLPKQTPESFARTLEKVLELRPDRLAVFN 239 (453)
T ss_pred cCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCHHHHHHHHHHHHhcCCCEEEEcc
Confidence 99999999998752 1235678888999998 455444 3 66666666665554 67776654
Q ss_pred ec--CCC-CCCc------c--cHHHHHHHHHHHHHHHhcCCCCeEEE
Q 025927 196 VN--PGF-GGQS------F--IESQVKKISDLRRMCLEKGVNPWIEV 231 (246)
Q Consensus 196 V~--PGf-gGQ~------F--~~~~l~KI~~lr~l~~~~~~~~~I~V 231 (246)
.. |+. ..++ + .+...+-...+.+.+.+.|+. ..++
T Consensus 240 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~-~ye~ 285 (453)
T PRK09249 240 YAHVPWLFKAQRKIDEADLPSPEEKLAILQQTIETLTEAGYQ-YIGM 285 (453)
T ss_pred CccchhhhhHhcCCCcccCCCHHHHHHHHHHHHHHHHHCCCE-EEec
Confidence 43 542 1111 1 122223344556677777774 3444
No 194
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=88.49 E-value=18 Score=35.34 Aligned_cols=154 Identities=12% Similarity=0.238 Sum_probs=90.4
Q ss_pred ccChhhHHHHHHHHHHcCCCEEEe-eeccCccc-CC-----CCCCHHHHhhcc---c-CCCCCeeEEEeccCccc----c
Q 025927 66 SANFAKLGEQVKAVELAGCDWIHV-DVMDGRFV-PN-----ITIGPLVVDALR---P-VTDLPLDVHLMIVEPEQ----R 130 (246)
Q Consensus 66 ~aD~~~l~~~i~~l~~~g~d~lHi-DIMDG~FV-pN-----~tfgp~~I~~ir---~-~t~~plDvHLMV~~P~~----~ 130 (246)
+-.+.++-+|++.+.+.|+..+.+ |.--+.|- .+ ..| .+.++.|. + ..+++ -+.++..+|.. .
T Consensus 180 sr~~e~Vv~Ei~~l~~~G~~ei~l~g~~~~~y~~~~~~~~~~~~-~~Ll~~l~~~~~~~~~i~-~ir~~s~~p~~i~~el 257 (455)
T PRK14335 180 SRDLDAILQEIDVLSEKGVREITLLGQNVNSYRGRDREGNIVTF-PQLLRHIVRRAEVTDQIR-WIRFMSSHPKDLSDDL 257 (455)
T ss_pred cCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccccCCccCH-HHHHHHHHHhhcccCCce-EEEEeecCcccCCHHH
Confidence 556788889999999999887754 22112221 11 112 45566653 1 22232 35666667775 5
Q ss_pred hHHHHh--cCCCEEEEccCCcc------------cccHHHHHHHHHHc--CCcEE--EEEc-CCCChHHHHHhhhh----
Q 025927 131 VPDFIK--AGADIVSVHCEQSS------------TIHLHRTLNQIKDL--GAKAG--VVLN-PATSLSAIECVLDV---- 187 (246)
Q Consensus 131 i~~~~~--agad~It~H~E~~~------------~~~~~~~i~~Ik~~--G~k~G--lAln-P~Tpve~l~~~l~~---- 187 (246)
++.+++ .|+..+.+-+|+.+ .++..+.++.+|+. |+.++ +.+. |+-..+.++.-++.
T Consensus 258 l~~m~~~~~gc~~l~iglQSgsd~vLk~m~R~~t~e~~~~~v~~ir~~~pgi~i~~d~IvGfPgET~edf~~Tl~~i~~l 337 (455)
T PRK14335 258 IATIAQESRLCRLVHLPVQHGSNGVLKRMNRSYTREHYLSLVGKLKASIPNVALSTDILIGFPGETEEDFEQTLDLMREV 337 (455)
T ss_pred HHHHHhCCCCCCeEEEccCcCCHHHHHHcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhc
Confidence 666666 47899999999741 23466888889988 87665 3343 66666666554443
Q ss_pred -cceEE--EEeecCC-----CCCCcccHHHHHHHHHHHHHHH
Q 025927 188 -VDLVL--IMSVNPG-----FGGQSFIESQVKKISDLRRMCL 221 (246)
Q Consensus 188 -vD~VL--vMsV~PG-----fgGQ~F~~~~l~KI~~lr~l~~ 221 (246)
.|.+. ..|-.|| +.+|--.+..-+|.++|+++..
T Consensus 338 ~~~~~~~~~~sp~pGT~~~~~~~~v~~~~k~~R~~~l~~~~~ 379 (455)
T PRK14335 338 EFDSAFMYHYNPREGTPAYDFPDRIPDEVKIARLQRVIALQM 379 (455)
T ss_pred CCCeEEEEEecCCCCCchhhCCCCCCHHHHHHHHHHHHHHHH
Confidence 45544 4566677 2344333344455666655443
No 195
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=88.48 E-value=1.2 Score=40.01 Aligned_cols=70 Identities=29% Similarity=0.143 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCC-CCCeeEEEeccCcccchHHHHhcCCCEEEE
Q 025927 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVT-DLPLDVHLMIVEPEQRVPDFIKAGADIVSV 144 (246)
Q Consensus 71 ~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t-~~plDvHLMV~~P~~~i~~~~~agad~It~ 144 (246)
+..+-.+.++++|+|+||+|.|...- |. ...+.|+++++.. ++|+-.===|..++...+.+ ++|||.|.+
T Consensus 149 ~~~~~a~~l~~aGad~i~Vd~~~~g~-~~--a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l-~~GAd~Vmv 219 (231)
T TIGR00736 149 DELIDALNLVDDGFDGIHVDAMYPGK-PY--ADMDLLKILSEEFNDKIIIGNNSIDDIESAKEML-KAGADFVSV 219 (231)
T ss_pred hHHHHHHHHHHcCCCEEEEeeCCCCC-ch--hhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHH-HhCCCeEEE
Confidence 34456678899999999998655321 00 2367788888765 37755544455666666555 489998875
No 196
>PRK06052 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=88.18 E-value=5.1 Score=38.37 Aligned_cols=67 Identities=18% Similarity=0.296 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHH-------HHhhcccC------CCCCeeEEEeccCcccchHHHHhc
Q 025927 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPL-------VVDALRPV------TDLPLDVHLMIVEPEQRVPDFIKA 137 (246)
Q Consensus 71 ~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~-------~I~~ir~~------t~~plDvHLMV~~P~~~i~~~~~a 137 (246)
.+.++++.++++|++.|.+|= |.++.+|. .++++... .++...+||-+ |.. -+.+.+.
T Consensus 147 ~l~~e~~~l~~~gv~~IqIDE------P~l~~~~~~~~~~~~~i~Al~~a~~~a~~~gvdv~i~lH~--~l~-~~~i~~~ 217 (344)
T PRK06052 147 FVENAIKSAKNFKIKTISIDE------PSLGINPEIQFSDDEIISALTVASTYARKQGADVEIHLHS--PLY-YELICET 217 (344)
T ss_pred HHHHHHHHHHHCCCCEEEecC------cccccCCccccCHHHHHHHHHHHHhhhccCCcceEEEEeh--Hhh-HHHHhcC
Confidence 456889999999999999993 55555543 45555443 34555555555 322 2566666
Q ss_pred C-CCEEEEcc
Q 025927 138 G-ADIVSVHC 146 (246)
Q Consensus 138 g-ad~It~H~ 146 (246)
. +|.+.+-.
T Consensus 218 ~~idvi~~E~ 227 (344)
T PRK06052 218 PGINVIGVES 227 (344)
T ss_pred CCCCEEeeec
Confidence 6 99888643
No 197
>cd03311 CIMS_C_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the C-terminal barrel, and a few single-barrel sequences most similar to the C-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Sidechains from
Probab=88.14 E-value=3.6 Score=38.02 Aligned_cols=146 Identities=16% Similarity=0.238 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHcCCCEEEeeeccCcccCCC-------CCCHHHHhhccc-CCCCCeeEEEeccCc----------ccchH
Q 025927 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNI-------TIGPLVVDALRP-VTDLPLDVHLMIVEP----------EQRVP 132 (246)
Q Consensus 71 ~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~-------tfgp~~I~~ir~-~t~~plDvHLMV~~P----------~~~i~ 132 (246)
.+.++++.|.++|+++|.+|=-.-.+..+- .+--..++.++. -.+.++-+|+.-.|. ...++
T Consensus 156 ~~~~e~~~l~~aG~~~iQiDEP~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~lHiC~G~~~~~~~~~~~y~~i~~ 235 (332)
T cd03311 156 ALREEIRDLYDAGCRYIQIDEPALAEGLPLEPDDLAADYLKWANEALADRPDDTQIHTHICYGNFRSTWAAEGGYEPIAE 235 (332)
T ss_pred HHHHHHHHHHHcCCCEEEeecchhhccCCcccHHHHHHHHHHHHHHHHhCCCCCEEEEEEECCCCcccccccCcHHHHHH
Confidence 345788899999999999996544444332 112223333333 234566778876776 56678
Q ss_pred HHHhcCCCEEEEccCCcccccHHHHHHHHHHcCCcEEEEE-cCCCC----hHHHHHhhhh-cceEEE--EeecC--CCCC
Q 025927 133 DFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL-NPATS----LSAIECVLDV-VDLVLI--MSVNP--GFGG 202 (246)
Q Consensus 133 ~~~~agad~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAl-nP~Tp----ve~l~~~l~~-vD~VLv--MsV~P--GfgG 202 (246)
.+.+.++|.+++.+-.....++ +.+..+.. |..+++-+ ++.++ ++.+..-+.. .+++-. +.+.| ||+.
T Consensus 236 ~l~~~~vd~~~le~~~~~~~~~-~~l~~~~~-~k~l~~GvVd~~~~~~e~~e~v~~ri~~~~~~~~~~~l~lsp~CGl~~ 313 (332)
T cd03311 236 YIFELDVDVFFLEYDNSRAGGL-EPLKELPY-DKKVGLGVVDVKSPEVESPEEVKDRIEEAAKYVPLEQLWVSPDCGFAT 313 (332)
T ss_pred HHHhCCCCEEEEEEcCCCCcch-HHHHhCCC-CCEEEeeeecCCCCCCCCHHHHHHHHHHHHhhCCHHHEEECCCCCCCc
Confidence 8889999999987742101122 23333322 55555543 33332 3333333222 232211 35666 4444
Q ss_pred CcccHHHHHHHHHHHHH
Q 025927 203 QSFIESQVKKISDLRRM 219 (246)
Q Consensus 203 Q~F~~~~l~KI~~lr~l 219 (246)
-+. ..++.|++++.+.
T Consensus 314 ~~~-~~a~~kl~~~~~~ 329 (332)
T cd03311 314 RER-GNALTKLENMVKA 329 (332)
T ss_pred CCC-chhHHHHHHHHHH
Confidence 333 4557777766654
No 198
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=88.14 E-value=4.2 Score=36.70 Aligned_cols=145 Identities=17% Similarity=0.172 Sum_probs=90.7
Q ss_pred HHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhc-ccC--CCCCeeEEEeccCcccchHHHHhcCCCEEE-EccCCc
Q 025927 74 EQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDAL-RPV--TDLPLDVHLMIVEPEQRVPDFIKAGADIVS-VHCEQS 149 (246)
Q Consensus 74 ~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~i-r~~--t~~plDvHLMV~~P~~~i~~~~~agad~It-~H~E~~ 149 (246)
..++.+...|.|++=+|.-||.+ ..+.+..+ +.. .+...-|=+=..+|. .+....++|++-|. -|+|+
T Consensus 24 ~~~e~~~~~g~D~v~iDlEH~~~------~~~~~~~~~~a~~~~g~~~~VRv~~~~~~-~i~~~Ld~Ga~gIivP~v~s- 95 (249)
T TIGR02311 24 YAAEICAGAGFDWLLIDGEHAPN------DVRTILSQLQALAPYPSSPVVRPAIGDPV-LIKQLLDIGAQTLLVPMIET- 95 (249)
T ss_pred HHHHHHHhcCCCEEEEeccCCCC------CHHHHHHHHHHHHhcCCCcEEECCCCCHH-HHHHHhCCCCCEEEecCcCC-
Confidence 34566778899999999999985 23333222 221 123323332223332 67888999999554 56774
Q ss_pred ccccHHHHHHHHHH--cCC-------------------------cEEEEEcCCCCh--HHHHHhh--hhcceEEE----E
Q 025927 150 STIHLHRTLNQIKD--LGA-------------------------KAGVVLNPATSL--SAIECVL--DVVDLVLI----M 194 (246)
Q Consensus 150 ~~~~~~~~i~~Ik~--~G~-------------------------k~GlAlnP~Tpv--e~l~~~l--~~vD~VLv----M 194 (246)
.++..++.+.+|- .|. ...+...-+|+- +.+++++ +.+|.|.+ +
T Consensus 96 -~e~a~~~v~~~~y~P~G~Rg~~~~~~~~~~~~~~~~y~~~~n~~~~vi~~IEt~~av~n~~eI~a~~gvd~l~~G~~DL 174 (249)
T TIGR02311 96 -AEQAEAAVAATRYPPMGIRGVGSALARASRWNRIPDYLQQADEEICVLLQVETREALDNLEEIAAVEGVDGVFIGPADL 174 (249)
T ss_pred -HHHHHHHHHHcCCCCCCcCCCCCccchhhccCChHHHHHHhhhceEEEEEecCHHHHHHHHHHHCCCCCcEEEECHHHH
Confidence 4677788887772 232 223554555554 6777766 45777776 3
Q ss_pred eecCCCCCCcccHHHHHHHHHHHHHHHhcCCCC
Q 025927 195 SVNPGFGGQSFIESQVKKISDLRRMCLEKGVNP 227 (246)
Q Consensus 195 sV~PGfgGQ~F~~~~l~KI~~lr~l~~~~~~~~ 227 (246)
+..=|..|+...|+..+-++++++.+..++...
T Consensus 175 s~slG~~~~~~~~~~~~a~~~v~~~~~~a~~~~ 207 (249)
T TIGR02311 175 AASMGHLGNPSHPEVQAAIDDAIERIKAAGKAA 207 (249)
T ss_pred HHhcCCCCCCCChHHHHHHHHHHHHHHHcCCce
Confidence 444477777778888888888888887776644
No 199
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=88.08 E-value=16 Score=33.66 Aligned_cols=115 Identities=16% Similarity=0.183 Sum_probs=69.0
Q ss_pred cChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcc---cchHHHHhcCCCEEE
Q 025927 67 ANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPE---QRVPDFIKAGADIVS 143 (246)
Q Consensus 67 aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~---~~i~~~~~agad~It 143 (246)
.++..+.+.++.+.+.|+.. +.+..|.-.-.-.| .++++.+++..++. ++.+ +.|.. ++++.+.++|.+.|.
T Consensus 43 ls~eei~~~i~~~~~~gv~~--V~ltGGEPll~~~l-~~li~~i~~~~gi~-~v~i-tTNG~ll~~~~~~L~~~gl~~v~ 117 (334)
T TIGR02666 43 LTFEEIERLVRAFVGLGVRK--VRLTGGEPLLRKDL-VELVARLAALPGIE-DIAL-TTNGLLLARHAKDLKEAGLKRVN 117 (334)
T ss_pred CCHHHHHHHHHHHHHCCCCE--EEEECccccccCCH-HHHHHHHHhcCCCC-eEEE-EeCchhHHHHHHHHHHcCCCeEE
Confidence 35567777788888888774 45677753211111 23455555433331 5554 34543 467788899999888
Q ss_pred EccCCccc-------------ccHHHHHHHHHHcCCc-EEE--EEcCCCChHHHHHhhh
Q 025927 144 VHCEQSST-------------IHLHRTLNQIKDLGAK-AGV--VLNPATSLSAIECVLD 186 (246)
Q Consensus 144 ~H~E~~~~-------------~~~~~~i~~Ik~~G~k-~Gl--AlnP~Tpve~l~~~l~ 186 (246)
+-+++... ....+.++.+++.|+. +.+ ++-++...+++.++++
T Consensus 118 ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~in~vv~~g~n~~ei~~l~~ 176 (334)
T TIGR02666 118 VSLDSLDPERFAKITRRGGRLEQVLAGIDAALAAGLEPVKLNTVVMRGVNDDEIVDLAE 176 (334)
T ss_pred EecccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHH
Confidence 87775310 1244566677788875 544 6667666666666554
No 200
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=88.07 E-value=4.7 Score=38.80 Aligned_cols=159 Identities=19% Similarity=0.316 Sum_probs=101.0
Q ss_pred eeccccceeeeeeccccccCCCCCcEEeeeecccChhhHH---HHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhc
Q 025927 34 SFTRRRIQTIVKASARVDKFSKSDIIVSPSILSANFAKLG---EQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDAL 110 (246)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~IsPSIl~aD~~~l~---~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~i 110 (246)
...||+++++.=..-.+ -.+..+.-.|+.+.|..+.+ +|+++|+++|++.+-+=|-|-.=. +-++.|
T Consensus 6 ~~~Rr~tr~V~VG~v~i---Gg~~Pi~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvav~~~~~a-------~al~~I 75 (360)
T PRK00366 6 PIPRRKTRQVKVGNVPI---GGDAPIVVQSMTNTDTADVEATVAQIKRLARAGCEIVRVAVPDMEAA-------AALPEI 75 (360)
T ss_pred ccccccceEEEEcCEeE---CCCCcEEEEecCCCCchhHHHHHHHHHHHHHcCCCEEEEccCCHHHH-------HhHHHH
Confidence 34577776654333222 22334556677777777666 788999999999999988775443 346666
Q ss_pred ccCCCCCe--eEEEeccCcccchHHHHhcCCCEEEEccCCcc--cccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhh
Q 025927 111 RPVTDLPL--DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS--TIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD 186 (246)
Q Consensus 111 r~~t~~pl--DvHLMV~~P~~~i~~~~~agad~It~H~E~~~--~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~ 186 (246)
++.+++|+ |+|. ||..-+ .-+++|+|-+-+-+=+.. .+.+..+++..|++|+-.=+-.|-+- ++ +.+++
T Consensus 76 ~~~~~iPlvADIHF---d~~lAl-~a~~~G~~~iRINPGNig~~~~~v~~vv~~ak~~~ipIRIGvN~GS-L~--~~~~~ 148 (360)
T PRK00366 76 KKQLPVPLVADIHF---DYRLAL-AAAEAGADALRINPGNIGKRDERVREVVEAAKDYGIPIRIGVNAGS-LE--KDLLE 148 (360)
T ss_pred HHcCCCCEEEecCC---CHHHHH-HHHHhCCCEEEECCCCCCchHHHHHHHHHHHHHCCCCEEEecCCcc-Ch--HHHHH
Confidence 76666665 6676 444433 346789999988876542 34678899999999988888888663 32 23333
Q ss_pred hcceEEEEeecCCCCCCcccHHHHHHHHHHHH
Q 025927 187 VVDLVLIMSVNPGFGGQSFIESQVKKISDLRR 218 (246)
Q Consensus 187 ~vD~VLvMsV~PGfgGQ~F~~~~l~KI~~lr~ 218 (246)
+.+. -..+.+.+++++-++.+.+
T Consensus 149 ~yg~---------~t~eamveSAl~~~~~le~ 171 (360)
T PRK00366 149 KYGE---------PTPEALVESALRHAKILEE 171 (360)
T ss_pred HcCC---------CCHHHHHHHHHHHHHHHHH
Confidence 3221 1225566666666655433
No 201
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=87.99 E-value=2.7 Score=39.54 Aligned_cols=84 Identities=17% Similarity=0.204 Sum_probs=52.4
Q ss_pred cHHHHHHHHHH----cCCcEEEEEcCCCChHHHHHhhh-------hcceEEE--EeecCCCCCCcccHHHHHHHHHHHHH
Q 025927 153 HLHRTLNQIKD----LGAKAGVVLNPATSLSAIECVLD-------VVDLVLI--MSVNPGFGGQSFIESQVKKISDLRRM 219 (246)
Q Consensus 153 ~~~~~i~~Ik~----~G~k~GlAlnP~Tpve~l~~~l~-------~vD~VLv--MsV~PGfgGQ~F~~~~l~KI~~lr~l 219 (246)
.+.+.++.+|+ .+...=|.+-.+| ++++.+.++ -+|.|++ |-+.|.-..|. .+.++++.++
T Consensus 185 ~i~~av~~~r~~~~~~~~~~kIeVEv~t-leea~ea~~~~~~~~agaDiImLDnm~~~~~~~~~~-----~e~l~~av~~ 258 (308)
T PLN02716 185 GITNAVQSADKYLEEKGLSMKIEVETRT-LEEVKEVLEYLSDTKTSLTRVMLDNMVVPLENGDVD-----VSMLKEAVEL 258 (308)
T ss_pred CHHHHHHHHHHhhhhcCCCeeEEEEECC-HHHHHHHHHhcccccCCCCEEEeCCCcccccccCCC-----HHHHHHHHHh
Confidence 45677888876 2221235555555 777777776 3899998 54455443333 3334444444
Q ss_pred HHhcCCCCeEEEeCCCChhhhhhccc
Q 025927 220 CLEKGVNPWIEVDGGVGPKNAYKVPN 245 (246)
Q Consensus 220 ~~~~~~~~~I~VDGGI~~e~i~~l~~ 245 (246)
+.. ...+++=||||.+|+.++++
T Consensus 259 ~~~---~~~lEaSGGIt~~ni~~yA~ 281 (308)
T PLN02716 259 ING---RFETEASGNVTLDTVHKIGQ 281 (308)
T ss_pred hCC---CceEEEECCCCHHHHHHHHH
Confidence 432 35699999999999998754
No 202
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=87.95 E-value=8.8 Score=33.91 Aligned_cols=153 Identities=19% Similarity=0.238 Sum_probs=97.0
Q ss_pred EEeeeecccChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCC-CCCeeEEEeccCcccchHHHHhc
Q 025927 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVT-DLPLDVHLMIVEPEQRVPDFIKA 137 (246)
Q Consensus 59 ~IsPSIl~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t-~~plDvHLMV~~P~~~i~~~~~a 137 (246)
.+-|-+-..|..+..+.++.|.+.|+..+-+=.- ..-..+.|+.+++.. ++.+=+. =|.+++. ++..+++
T Consensus 5 ~vv~Vir~~~~~~a~~ia~al~~gGi~~iEit~~-------tp~a~~~I~~l~~~~~~~~vGAG-TVl~~e~-a~~ai~a 75 (201)
T PRK06015 5 PVIPVLLIDDVEHAVPLARALAAGGLPAIEITLR-------TPAALDAIRAVAAEVEEAIVGAG-TILNAKQ-FEDAAKA 75 (201)
T ss_pred CEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCC-------CccHHHHHHHHHHHCCCCEEeeE-eCcCHHH-HHHHHHc
Confidence 4556666678888889999999999998876432 222456677776532 2111111 1345554 6788999
Q ss_pred CCCEEEE-ccCCcccccHHHHHHHHHHcCCcEEEEEcCC--CChHHHHHhhhhcceEEEEeecCC--CCCCcccHHHHHH
Q 025927 138 GADIVSV-HCEQSSTIHLHRTLNQIKDLGAKAGVVLNPA--TSLSAIECVLDVVDLVLIMSVNPG--FGGQSFIESQVKK 212 (246)
Q Consensus 138 gad~It~-H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~--Tpve~l~~~l~~vD~VLvMsV~PG--fgGQ~F~~~~l~K 212 (246)
|+++|.- |+. .+++++.+++| +..-|+ ||-|...-+=.-.|.|=+. |+ +||-+|
T Consensus 76 GA~FivSP~~~-------~~vi~~a~~~~----i~~iPG~~TptEi~~A~~~Ga~~vK~F---Pa~~~GG~~y------- 134 (201)
T PRK06015 76 GSRFIVSPGTT-------QELLAAANDSD----VPLLPGAATPSEVMALREEGYTVLKFF---PAEQAGGAAF------- 134 (201)
T ss_pred CCCEEECCCCC-------HHHHHHHHHcC----CCEeCCCCCHHHHHHHHHCCCCEEEEC---CchhhCCHHH-------
Confidence 9996653 332 25777778665 445555 7777666654456766554 43 334343
Q ss_pred HHHHHHHHHhcCCCCeEEEeCCCChhhhhhccc
Q 025927 213 ISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVPN 245 (246)
Q Consensus 213 I~~lr~l~~~~~~~~~I~VDGGI~~e~i~~l~~ 245 (246)
|+.++.-++ +..+..=|||+.+|+++..+
T Consensus 135 ikal~~plp----~~~l~ptGGV~~~n~~~~l~ 163 (201)
T PRK06015 135 LKALSSPLA----GTFFCPTGGISLKNARDYLS 163 (201)
T ss_pred HHHHHhhCC----CCcEEecCCCCHHHHHHHHh
Confidence 455666654 35788999999999987643
No 203
>PRK08999 hypothetical protein; Provisional
Probab=87.95 E-value=6.3 Score=35.93 Aligned_cols=161 Identities=15% Similarity=0.127 Sum_probs=87.9
Q ss_pred cEEeeeecccChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhc
Q 025927 58 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKA 137 (246)
Q Consensus 58 ~~IsPSIl~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~a 137 (246)
..|+|.-.+.+ ..+.+.++++-+.|++++|+-.=+-.--.- ...++++++.+. ..++.|.+.+ +++...+.
T Consensus 133 y~it~~~~~~~-~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~----~~~~~~l~~~~~-~~~~~liind---~~~la~~~ 203 (312)
T PRK08999 133 YLITPEGEDGD-AAFLARLERALAAGIRLIQLRAPQLPPAAY----RALARAALGLCR-RAGAQLLLNG---DPELAEDL 203 (312)
T ss_pred EEEECcccccc-HHHHHHHHHHHHCCCcEEEEeCCCCCHHHH----HHHHHHHHHHHH-HhCCEEEEEC---cHHHHHhc
Confidence 45666655431 245567777778899999996543211100 224444444321 1245566654 35566778
Q ss_pred CCCEEEEccCCcccccHHHHHHHHHHc--CCcEEEEEcCCCChHHHHHhhh-hcceEEEEeecCC--CC-CCcccHHHHH
Q 025927 138 GADIVSVHCEQSSTIHLHRTLNQIKDL--GAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPG--FG-GQSFIESQVK 211 (246)
Q Consensus 138 gad~It~H~E~~~~~~~~~~i~~Ik~~--G~k~GlAlnP~Tpve~l~~~l~-~vD~VLvMsV~PG--fg-GQ~F~~~~l~ 211 (246)
|+|.|.+-.+. ... . ..|+. +..+|++-+ .++.+..... .+|+|.+=.|-|= .. +++ --++
T Consensus 204 ~~~GvHl~~~d---~~~---~-~~r~~~~~~~ig~S~h---~~~~~~~a~~~~~dyi~~gpvf~t~tk~~~~~---~g~~ 270 (312)
T PRK08999 204 GADGVHLTSAQ---LAA---L-AARPLPAGRWVAASCH---DAEELARAQRLGVDFAVLSPVQPTASHPGAAP---LGWE 270 (312)
T ss_pred CCCEEEcChhh---cCh---H-hhccCCCCCEEEEecC---CHHHHHHHHhcCCCEEEECCCcCCCCCCCCCC---CCHH
Confidence 99966654432 111 1 11333 345666653 3344444322 5899988665431 11 222 2345
Q ss_pred HHHHHHHHHHhcCCCCeEEEeCCCChhhhhhccc
Q 025927 212 KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVPN 245 (246)
Q Consensus 212 KI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~l~~ 245 (246)
.++++++.. +..+.+=||||.+|++++.+
T Consensus 271 ~~~~~~~~~-----~~Pv~AiGGI~~~~~~~~~~ 299 (312)
T PRK08999 271 GFAALIAGV-----PLPVYALGGLGPGDLEEARE 299 (312)
T ss_pred HHHHHHHhC-----CCCEEEECCCCHHHHHHHHH
Confidence 555554433 34677889999999998764
No 204
>PRK06233 hypothetical protein; Provisional
Probab=87.79 E-value=2.8 Score=40.02 Aligned_cols=151 Identities=13% Similarity=0.177 Sum_probs=79.1
Q ss_pred hHHHHHHHHHHcCCCEEEeeeccCcccCC-C----C----------CCHHHHhhccc-CCCCC----eeEEEeccCc---
Q 025927 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPN-I----T----------IGPLVVDALRP-VTDLP----LDVHLMIVEP--- 127 (246)
Q Consensus 71 ~l~~~i~~l~~~g~d~lHiDIMDG~FVpN-~----t----------fgp~~I~~ir~-~t~~p----lDvHLMV~~P--- 127 (246)
.+.++++.|.++|+++|.+|==.-.+-.. . . +-...++.+.. .-++| +-.|+---|=
T Consensus 172 a~~~Ei~~L~~aG~~~IQiDeP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~p~d~~i~~H~C~Gn~~~~ 251 (372)
T PRK06233 172 AYHDTIQHFYDLGARYIQLDDTTWAYLISKLNDTENDPKEHQKYVKLAEDAVYVINKALADLPEDLTVTTHICRGNFKST 251 (372)
T ss_pred HHHHHHHHHHHCCCCEEEEcCCCHHhhhccccccccchhhhhhHHHHHHHHHHHHHHHHhCCCcCCEEEEEeeCCCCCCc
Confidence 35688999999999999999644222111 0 0 00112223322 12343 3445543322
Q ss_pred -------ccchHHHHhcCCCEEEEccCCcccccHHHHHHHHHHc--C--CcEEEEEcCCCChHHHHHhhhh----cceE-
Q 025927 128 -------EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDL--G--AKAGVVLNPATSLSAIECVLDV----VDLV- 191 (246)
Q Consensus 128 -------~~~i~~~~~agad~It~H~E~~~~~~~~~~i~~Ik~~--G--~k~GlAlnP~Tpve~l~~~l~~----vD~V- 191 (246)
+...+.+.+..+|.+.+-+-+.-..++ +.+..+... + +-.||.=.-.+-+|..+.+... +++|
T Consensus 252 ~~~~g~y~~i~~~l~~~~vd~~~lE~~~~r~~~~-~~L~~~~~~~~~k~v~lGvid~~~~~vE~~e~I~~rI~~a~~~v~ 330 (372)
T PRK06233 252 YLFSGGYEPVAKYLGQLNYDGFFLEYDNDRSGSF-EPLKQIWNNRDNVRIVLGLITSKFPELEDEDEIIARIDEATEYVP 330 (372)
T ss_pred ccccCcHHHHHHHHHhCCCCEEEEecCCCccCcc-chHHHhhccCCCCEEEeeeecCCCCCCCCHHHHHHHHHHHHHhCC
Confidence 245678888999999887643111222 334444321 3 3345554444555544444322 2222
Q ss_pred -EEEeecC--CCC-----CCcccHHHHHHHHHHHHHHHh
Q 025927 192 -LIMSVNP--GFG-----GQSFIESQVKKISDLRRMCLE 222 (246)
Q Consensus 192 -LvMsV~P--Gfg-----GQ~F~~~~l~KI~~lr~l~~~ 222 (246)
-=+.+.| ||+ +.--.+...+|++.+++...+
T Consensus 331 ~e~l~lspdCGf~s~~~g~~l~~~~~~~KL~~l~~~a~~ 369 (372)
T PRK06233 331 LSNLALSTQCGFASTEEGNILTEADQWAKLALVKKIADK 369 (372)
T ss_pred HHHEEecCCCCCccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 1245566 775 223456678888888876543
No 205
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=87.79 E-value=20 Score=32.15 Aligned_cols=143 Identities=17% Similarity=0.223 Sum_probs=80.9
Q ss_pred hhHHHHHHHHHHcCCCEEEeeeccC------cccCCCCCCHHHHhhcccCCCCCeeEEEe----ccCcccchHHHHhcCC
Q 025927 70 AKLGEQVKAVELAGCDWIHVDVMDG------RFVPNITIGPLVVDALRPVTDLPLDVHLM----IVEPEQRVPDFIKAGA 139 (246)
Q Consensus 70 ~~l~~~i~~l~~~g~d~lHiDIMDG------~FVpN~tfgp~~I~~ir~~t~~plDvHLM----V~~P~~~i~~~~~aga 139 (246)
....+-++.|.++|++++=+=-..| .++|...=..+.++.+++... ..-+-.| ..+ .+.++...++|+
T Consensus 22 ~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~-~~~~~~~~~~~~~~-~~~i~~a~~~g~ 99 (263)
T cd07943 22 EQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALK-QAKLGVLLLPGIGT-VDDLKMAADLGV 99 (263)
T ss_pred HHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhcc-CCEEEEEecCCccC-HHHHHHHHHcCC
Confidence 4455667888999998765431111 122222224466777755321 1223334 223 356778888999
Q ss_pred CEEEE--ccCCcccccHHHHHHHHHHcCCcEEEEE--cCCCChHHHHHhhhh-----cceEEEEeecCCCCCCcccHHHH
Q 025927 140 DIVSV--HCEQSSTIHLHRTLNQIKDLGAKAGVVL--NPATSLSAIECVLDV-----VDLVLIMSVNPGFGGQSFIESQV 210 (246)
Q Consensus 140 d~It~--H~E~~~~~~~~~~i~~Ik~~G~k~GlAl--nP~Tpve~l~~~l~~-----vD~VLvMsV~PGfgGQ~F~~~~l 210 (246)
+.|.+ +.. ......+.++++|+.|+++-+.+ -..++.+.+.+++.. +|.|-+ +.-.|...-..+.
T Consensus 100 ~~iri~~~~s--~~~~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l----~DT~G~~~P~~v~ 173 (263)
T cd07943 100 DVVRVATHCT--EADVSEQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYGADCVYV----TDSAGAMLPDDVR 173 (263)
T ss_pred CEEEEEechh--hHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEEEE----cCCCCCcCHHHHH
Confidence 97654 432 12356788999999999987777 333455666665543 555433 2334444444455
Q ss_pred HHHHHHHHHH
Q 025927 211 KKISDLRRMC 220 (246)
Q Consensus 211 ~KI~~lr~l~ 220 (246)
+-++.+|+..
T Consensus 174 ~lv~~l~~~~ 183 (263)
T cd07943 174 ERVRALREAL 183 (263)
T ss_pred HHHHHHHHhC
Confidence 5555555543
No 206
>PRK06520 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=87.71 E-value=3 Score=39.72 Aligned_cols=150 Identities=15% Similarity=0.164 Sum_probs=80.1
Q ss_pred hHHHHHHHHHHcCCCEEEeeeccCcccCC---------CCCCHH-----HHhhccc-CCCCC----eeEEEeccCcc---
Q 025927 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPN---------ITIGPL-----VVDALRP-VTDLP----LDVHLMIVEPE--- 128 (246)
Q Consensus 71 ~l~~~i~~l~~~g~d~lHiDIMDG~FVpN---------~tfgp~-----~I~~ir~-~t~~p----lDvHLMV~~P~--- 128 (246)
.+.++++.|.++|+++|.+|==.-.+.++ -...++ .++.++. .-++| +-.|+.--|..
T Consensus 171 al~~Ei~~L~~aG~~~IQiDep~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~n~~~~~~p~d~~v~~HiC~Gn~~~~~ 250 (368)
T PRK06520 171 TWRDAIKAFYDAGCRYLQLDDTVWAYLCSDDQRQQIRERGDDPDELARIYARVLNKALAGKPADLTIGLHVCRGNFRSTW 250 (368)
T ss_pred HHHHHHHHHHHCCCCEEEecCcchhhccChhhhhhhhhccCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEeecCCCCCcc
Confidence 45689999999999999999655443221 001221 1233322 12333 34466555543
Q ss_pred -------cchHHH-HhcCCCEEEEccCCcccccHHHHHHHHHHcC--CcEEEEEcCCCChHHHHHhhhh----cceE--E
Q 025927 129 -------QRVPDF-IKAGADIVSVHCEQSSTIHLHRTLNQIKDLG--AKAGVVLNPATSLSAIECVLDV----VDLV--L 192 (246)
Q Consensus 129 -------~~i~~~-~~agad~It~H~E~~~~~~~~~~i~~Ik~~G--~k~GlAlnP~Tpve~l~~~l~~----vD~V--L 192 (246)
...+.+ .++.+|.+.+-+.+.-..++ +.+..+...+ +-.||.=.-.+.+|..+.+... +++| -
T Consensus 251 ~~~~~y~~i~~~L~~~~~vd~~~lE~~~~r~g~~-e~L~~l~~~~k~v~lGvvd~~~~~vE~~e~I~~rI~~a~~~v~~~ 329 (368)
T PRK06520 251 ISEGGYEPVAETLFGGVNVDAFFLEYDNERAGGF-EPLRFIPPGHQQVVLGLITTKNGELENADDVKARLAEAAKFVPLE 329 (368)
T ss_pred ccccchhHHHHHHHhhcCCCeEEEEeccCCCCCc-chHHHhhhcCCEEEeeEEeCCCCCCCCHHHHHHHHHHHHHhCCHH
Confidence 556774 57899999888764211111 2233333323 3345554444555544443322 2222 1
Q ss_pred EEeecC--CCCC-----CcccHHHHHHHHHHHHHHH
Q 025927 193 IMSVNP--GFGG-----QSFIESQVKKISDLRRMCL 221 (246)
Q Consensus 193 vMsV~P--GfgG-----Q~F~~~~l~KI~~lr~l~~ 221 (246)
=+.+.| ||+- .--.+.+.+|++.+++..+
T Consensus 330 ~l~lspdCGf~s~~~~~~l~~~~~~~KL~~l~~~a~ 365 (368)
T PRK06520 330 QLCLSPQCGFASTEEGNSLSEEQQWAKLRLVVEIAN 365 (368)
T ss_pred HEeeCcccCCCccccCCCCCHHHHHHHHHHHHHHHH
Confidence 255566 7762 2344667888888877654
No 207
>PTZ00413 lipoate synthase; Provisional
Probab=87.70 E-value=4.9 Score=39.18 Aligned_cols=146 Identities=12% Similarity=0.109 Sum_probs=90.8
Q ss_pred cChhhHHHHHHHHHHcCCCEEEeeeccCcc--cCCCC--CCHHHHhhcccC-CCCCeeEEEe-c-cCcccchHHHHhcCC
Q 025927 67 ANFAKLGEQVKAVELAGCDWIHVDVMDGRF--VPNIT--IGPLVVDALRPV-TDLPLDVHLM-I-VEPEQRVPDFIKAGA 139 (246)
Q Consensus 67 aD~~~l~~~i~~l~~~g~d~lHiDIMDG~F--VpN~t--fgp~~I~~ir~~-t~~plDvHLM-V-~~P~~~i~~~~~aga 139 (246)
.|...+.+..+...+.|++ |+=|.-|.= .|.-. -=-+.|++||+. .++.+++-+= . -+ ...++.+.++|+
T Consensus 177 lD~eEp~~vA~av~~~Gl~--~~VVTSv~RDDL~D~ga~~~a~~I~~Ir~~~p~~~IevligDf~g~-~e~l~~L~eAG~ 253 (398)
T PTZ00413 177 LDPNEPEKVAKAVAEMGVD--YIVMTMVDRDDLPDGGASHVARCVELIKESNPELLLEALVGDFHGD-LKSVEKLANSPL 253 (398)
T ss_pred CCHHHHHHHHHHHHHcCCC--EEEEEEEcCCCCChhhHHHHHHHHHHHHccCCCCeEEEcCCccccC-HHHHHHHHhcCC
Confidence 4888888999999999997 553333321 22211 123567777774 3455554331 1 12 247889999999
Q ss_pred CEEEEccCCcc--------c-cc---HHHHHHHHHHc---CCcE--EEEEcCCCChHHHHHhhhh-----cceEEE-Eee
Q 025927 140 DIVSVHCEQSS--------T-IH---LHRTLNQIKDL---GAKA--GVVLNPATSLSAIECVLDV-----VDLVLI-MSV 196 (246)
Q Consensus 140 d~It~H~E~~~--------~-~~---~~~~i~~Ik~~---G~k~--GlAlnP~Tpve~l~~~l~~-----vD~VLv-MsV 196 (246)
|.+.-++|+.. . .. -.++|+..|+. |+.+ |+.+.++-..+++.+.+.+ +|.+.+ =-.
T Consensus 254 dvynHNLETv~rLyp~VRt~~atYe~sLe~Lr~AKe~f~~gi~tcSGiIVGLGET~eEvie~m~dLrelGVDivtIGQYL 333 (398)
T PTZ00413 254 SVYAHNIECVERITPYVRDRRASYRQSLKVLEHVKEFTNGAMLTKSSIMLGLGETEEEVRQTLRDLRTAGVSAVTLGQYL 333 (398)
T ss_pred CEEecccccCHhHHHHHccCcCCHHHHHHHHHHHHHHhcCCceEeeeeEecCCCCHHHHHHHHHHHHHcCCcEEeecccc
Confidence 99999999741 1 11 23566666765 7755 9999999888888877654 666666 222
Q ss_pred cCCCCCCc----ccHHHHHHHHH
Q 025927 197 NPGFGGQS----FIESQVKKISD 215 (246)
Q Consensus 197 ~PGfgGQ~----F~~~~l~KI~~ 215 (246)
.|...--+ .-|+.+++.++
T Consensus 334 ~Ps~~h~~V~~yv~P~~F~~~~~ 356 (398)
T PTZ00413 334 QPTKTRLKVSRYAHPKEFEMWEE 356 (398)
T ss_pred CCCcccCCceeccCHHHHHHHHH
Confidence 44322111 34666665554
No 208
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=87.64 E-value=1.1 Score=40.82 Aligned_cols=159 Identities=23% Similarity=0.253 Sum_probs=98.8
Q ss_pred hhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEEEccCCc
Q 025927 70 AKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS 149 (246)
Q Consensus 70 ~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It~H~E~~ 149 (246)
.+..+..+.++++|++.|=+ ..|.+| |.-+.+.+.++|+.+++|+-.-=-+-+|.+.. .-..+|||.|.+-+...
T Consensus 68 ~d~~~~a~~y~~~GA~aiSV-lTe~~~---F~Gs~~dL~~v~~~~~~PvL~KDFIid~~QI~-eA~~~GADaVLLI~~~L 142 (254)
T PF00218_consen 68 FDPAEIAKAYEEAGAAAISV-LTEPKF---FGGSLEDLRAVRKAVDLPVLRKDFIIDPYQIY-EARAAGADAVLLIAAIL 142 (254)
T ss_dssp -SHHHHHHHHHHTT-SEEEE-E--SCC---CHHHHHHHHHHHHHSSS-EEEES---SHHHHH-HHHHTT-SEEEEEGGGS
T ss_pred CCHHHHHHHHHhcCCCEEEE-ECCCCC---CCCCHHHHHHHHHHhCCCcccccCCCCHHHHH-HHHHcCCCEeehhHHhC
Confidence 46677788899999999887 556555 45567889999988888876654444555533 33667999999998876
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhh-hcceEEEEeecCCCCCCcccHHHHHHHHHHHHHHHhcCCCCe
Q 025927 150 STIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPW 228 (246)
Q Consensus 150 ~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~-~vD~VLvMsV~PGfgGQ~F~~~~l~KI~~lr~l~~~~~~~~~ 228 (246)
....+.++++..++.|+.+=+=+. ..++++..+. ..++|=|=..+. ..-... +++-.+|..++++. ..
T Consensus 143 ~~~~l~~l~~~a~~lGle~lVEVh---~~~El~~al~~~a~iiGINnRdL--~tf~vd---~~~~~~l~~~ip~~---~~ 211 (254)
T PF00218_consen 143 SDDQLEELLELAHSLGLEALVEVH---NEEELERALEAGADIIGINNRDL--KTFEVD---LNRTEELAPLIPKD---VI 211 (254)
T ss_dssp GHHHHHHHHHHHHHTT-EEEEEES---SHHHHHHHHHTT-SEEEEESBCT--TTCCBH---THHHHHHHCHSHTT---SE
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEC---CHHHHHHHHHcCCCEEEEeCccc--cCcccC---hHHHHHHHhhCccc---ee
Confidence 555678999999999999988887 4455555442 355544433332 222233 33445556666643 56
Q ss_pred EEEeCCCC-hhhhhhcc
Q 025927 229 IEVDGGVG-PKNAYKVP 244 (246)
Q Consensus 229 I~VDGGI~-~e~i~~l~ 244 (246)
+-.-+||+ .+.+..+.
T Consensus 212 ~iseSGI~~~~d~~~l~ 228 (254)
T PF00218_consen 212 VISESGIKTPEDARRLA 228 (254)
T ss_dssp EEEESS-SSHHHHHHHC
T ss_pred EEeecCCCCHHHHHHHH
Confidence 77799997 46665554
No 209
>PRK05660 HemN family oxidoreductase; Provisional
Probab=87.52 E-value=8.4 Score=36.61 Aligned_cols=112 Identities=16% Similarity=0.211 Sum_probs=69.6
Q ss_pred eEEEeccCccc----chHHHHhcCCCEEEEccCCccc------------ccHHHHHHHHHHcCCc-EEEEEcCC---CCh
Q 025927 119 DVHLMIVEPEQ----RVPDFIKAGADIVSVHCEQSST------------IHLHRTLNQIKDLGAK-AGVVLNPA---TSL 178 (246)
Q Consensus 119 DvHLMV~~P~~----~i~~~~~agad~It~H~E~~~~------------~~~~~~i~~Ik~~G~k-~GlAlnP~---Tpv 178 (246)
++-+-+ ||.. .++.+.++|+++|++=+|+... ++..+.++.+|+.|++ +++-+..+ ...
T Consensus 95 eit~e~-np~~l~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~~~~~G~~~v~~dli~Glpgqt~ 173 (378)
T PRK05660 95 EITMEA-NPGTVEADRFVGYQRAGVNRISIGVQSFSEEKLKRLGRIHGPDEAKRAAKLAQGLGLRSFNLDLMHGLPDQSL 173 (378)
T ss_pred EEEEEe-CcCcCCHHHHHHHHHcCCCEEEeccCcCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCH
Confidence 444443 6664 5778889999999999997521 2345677888999986 36666645 444
Q ss_pred HHHHHhhhh-----cceEEE--EeecCC--CCCC----cccHHHHHHHHHHHHHHHhcCCCCeEEEe
Q 025927 179 SAIECVLDV-----VDLVLI--MSVNPG--FGGQ----SFIESQVKKISDLRRMCLEKGVNPWIEVD 232 (246)
Q Consensus 179 e~l~~~l~~-----vD~VLv--MsV~PG--fgGQ----~F~~~~l~KI~~lr~l~~~~~~~~~I~VD 232 (246)
+.+..-+.. +|.|.+ +++.|| +..+ +-.+...+-.+.+.+++.++|+. ..+++
T Consensus 174 ~~~~~~l~~~~~l~p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~-~yei~ 239 (378)
T PRK05660 174 EEALDDLRQAIALNPPHLSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQGHQLLTAAGYQ-QYETS 239 (378)
T ss_pred HHHHHHHHHHHhcCCCeEEeeccEeccCCcccccCCCCcCHHHHHHHHHHHHHHHHHcCCc-Eeecc
Confidence 444443332 566655 667787 3332 11234455566677888888875 34543
No 210
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=87.50 E-value=4 Score=34.38 Aligned_cols=85 Identities=16% Similarity=0.142 Sum_probs=58.2
Q ss_pred HHHhcCCCEEEEccCCccc------ccHHHHHHHHHHc----CCcEEEEEcCCCCh----HHHHHhhhhcceEEEEeecC
Q 025927 133 DFIKAGADIVSVHCEQSST------IHLHRTLNQIKDL----GAKAGVVLNPATSL----SAIECVLDVVDLVLIMSVNP 198 (246)
Q Consensus 133 ~~~~agad~It~H~E~~~~------~~~~~~i~~Ik~~----G~k~GlAlnP~Tpv----e~l~~~l~~vD~VLvMsV~P 198 (246)
.+.+.|-|-|-+.+|.... .....+++.+|+. +....+++.|.... ..+..+.+.+|+|.+|+-+.
T Consensus 99 ~v~~~~~DGidiD~E~~~~~~~~~~~~~~~ll~~lr~~l~~~~~~ls~a~~~~~~~~~~~~~~~~l~~~vD~v~vm~Ydl 178 (210)
T cd00598 99 FLKTYGFDGVDIDWEYPGAADNSDRENFITLLRELRSALGAANYLLTIAVPASYFDLGYAYDVPAIGDYVDFVNVMTYDL 178 (210)
T ss_pred HHHHcCCCceEEeeeCCCCcCccHHHHHHHHHHHHHHHhcccCcEEEEEecCChHHhhccCCHHHHHhhCCEEEEeeecc
Confidence 3345789999999986322 2345666666653 67777888777655 24677788999999999886
Q ss_pred CCCCCcccHHHHHHHHHHHHH
Q 025927 199 GFGGQSFIESQVKKISDLRRM 219 (246)
Q Consensus 199 GfgGQ~F~~~~l~KI~~lr~l 219 (246)
+. |=+|- +.-.|++.+|+.
T Consensus 179 ~~-g~~~~-s~~~k~~~~~~~ 197 (210)
T cd00598 179 VL-GVPFY-SLGAKAKYAKQK 197 (210)
T ss_pred cc-cchhh-hHHHHHHHHHHc
Confidence 55 33333 777777776665
No 211
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=87.41 E-value=14 Score=34.73 Aligned_cols=141 Identities=17% Similarity=0.196 Sum_probs=88.8
Q ss_pred CcccCCCCCC---HH-HHhhcccC-CCCCeeEEEecc-------CcccchHHHHhcC--CCEEEEccCCc---------c
Q 025927 94 GRFVPNITIG---PL-VVDALRPV-TDLPLDVHLMIV-------EPEQRVPDFIKAG--ADIVSVHCEQS---------S 150 (246)
Q Consensus 94 G~FVpN~tfg---p~-~I~~ir~~-t~~plDvHLMV~-------~P~~~i~~~~~ag--ad~It~H~E~~---------~ 150 (246)
+-|.+.++|. .+ +++.+++. .++|+-+-+.-. .++.|.+...+++ +|.+-+-+=.- .
T Consensus 111 ~~~~N~~gl~n~g~~~~~~~l~~~~~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~~ad~lelN~scP~~~g~~~~~~ 190 (344)
T PRK05286 111 EALINRMGFNNDGADALAERLKKAYRGIPLGINIGKNKDTPLEDAVDDYLICLEKLYPYADYFTVNISSPNTPGLRDLQY 190 (344)
T ss_pred cccccCCCCCCHhHHHHHHHHHHhcCCCcEEEEEecCCCCCcccCHHHHHHHHHHHHhhCCEEEEEccCCCCCCcccccC
Confidence 4566677773 22 55566553 567888888754 3456776665555 89887753210 0
Q ss_pred cccHHHHHHHHHHc-C-----CcEEEEEcCCCChHHHHHhhh-----hcceEEEEeec---------------CCCCCCc
Q 025927 151 TIHLHRTLNQIKDL-G-----AKAGVVLNPATSLSAIECVLD-----VVDLVLIMSVN---------------PGFGGQS 204 (246)
Q Consensus 151 ~~~~~~~i~~Ik~~-G-----~k~GlAlnP~Tpve~l~~~l~-----~vD~VLvMsV~---------------PGfgGQ~ 204 (246)
.+.+.++++.+|+. + +.+.+=|+|+.+.+.+..+.. -+|.|.+-..- -|++|-+
T Consensus 191 ~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~ 270 (344)
T PRK05286 191 GEALDELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRP 270 (344)
T ss_pred HHHHHHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHH
Confidence 12356788888864 4 788999999977555544432 28998887532 1455556
Q ss_pred ccHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCh
Q 025927 205 FIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP 237 (246)
Q Consensus 205 F~~~~l~KI~~lr~l~~~~~~~~~I~VDGGI~~ 237 (246)
..+..++-++++++... .++.|-.=|||+.
T Consensus 271 ~~~~~l~~v~~l~~~~~---~~ipIig~GGI~s 300 (344)
T PRK05286 271 LFERSTEVIRRLYKELG---GRLPIIGVGGIDS 300 (344)
T ss_pred HHHHHHHHHHHHHHHhC---CCCCEEEECCCCC
Confidence 66677777777776542 2356777888853
No 212
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=87.36 E-value=10 Score=35.89 Aligned_cols=159 Identities=16% Similarity=0.165 Sum_probs=87.8
Q ss_pred cChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCC--HHHHhhcccCC-CCCeeEEEeccCcccchHHHHhcCCCEEE
Q 025927 67 ANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIG--PLVVDALRPVT-DLPLDVHLMIVEPEQRVPDFIKAGADIVS 143 (246)
Q Consensus 67 aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfg--p~~I~~ir~~t-~~plDvHLMV~~P~~~i~~~~~agad~It 143 (246)
.+...+.++++.+.+.|+..+|+= -|.--+...+. .+.++.|++.. .+.+++-. -. ...++.|.++|++.++
T Consensus 103 Ls~eEI~~~a~~~~~~Gv~~i~lv--gGe~p~~~~~e~l~eii~~Ik~~~p~i~Iei~~--lt-~e~~~~Lk~aGv~r~~ 177 (366)
T TIGR02351 103 LNEEEIEREIEAIKKSGFKEILLV--TGESEKAAGVEYIAEAIKLAREYFSSLAIEVQP--LN-EEEYKKLVEAGLDGVT 177 (366)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEe--eCCCCCCCCHHHHHHHHHHHHHhCCcccccccc--CC-HHHHHHHHHcCCCEEE
Confidence 467788899999999999999973 35432222221 34455555432 12233322 22 2345789999999999
Q ss_pred EccCCcc------------ccc---HHHHHHHHHHcCCc-E--EEEEcCCC-ChHHHH-----Hhhhh--------cceE
Q 025927 144 VHCEQSS------------TIH---LHRTLNQIKDLGAK-A--GVVLNPAT-SLSAIE-----CVLDV--------VDLV 191 (246)
Q Consensus 144 ~H~E~~~------------~~~---~~~~i~~Ik~~G~k-~--GlAlnP~T-pve~l~-----~~l~~--------vD~V 191 (246)
+-.|+.. ..+ ..+.++.++++|++ + |+.+.-+- ..+.+. .+|.. +-+.
T Consensus 178 i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~g~i~Gl~e~~~d~~~~a~~l~~L~~~~~~~~~sv~~~ 257 (366)
T TIGR02351 178 VYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKAGMRKIGIGALLGLDDWRTDAFFTAYHLRYLQKKYWKTEISISVP 257 (366)
T ss_pred EEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCCCeeceeEEEeCchhHHHHHHHHHHHHHHHHHcCCCCcccccc
Confidence 9888741 012 24578888899976 4 44444432 223222 01111 2233
Q ss_pred EEEeecCCCCCCc-cc-HHHHHHHHHHHHHHHhcCCCCeEEEeCC
Q 025927 192 LIMSVNPGFGGQS-FI-ESQVKKISDLRRMCLEKGVNPWIEVDGG 234 (246)
Q Consensus 192 LvMsV~PGfgGQ~-F~-~~~l~KI~~lr~l~~~~~~~~~I~VDGG 234 (246)
.+|-+.-+|.++. +. .+.++.|..+|-+.+.. .|-+=||
T Consensus 258 ~l~P~~g~~~~~~~l~~~~~~~~i~~~R~~~P~~----~i~~s~g 298 (366)
T TIGR02351 258 RLRPCTNGLKPKVIVTDRELVQIICAYRLFDPFV----EISLSTR 298 (366)
T ss_pred ccccCCCCCCCCCcCCHHHHHHHHHHHHHhCccc----ccEEecC
Confidence 3455522343333 33 34556666667776654 4556666
No 213
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=87.36 E-value=10 Score=34.24 Aligned_cols=132 Identities=15% Similarity=0.162 Sum_probs=84.7
Q ss_pred cCCCCCcEEeeeecccChhhHHHHHHHHHHcCCCEE--EeeeccCcccCCCCCCHHHHhhcccC-CCCCeeEEEeccC--
Q 025927 52 KFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWI--HVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVE-- 126 (246)
Q Consensus 52 ~~~~~~~~IsPSIl~aD~~~l~~~i~~l~~~g~d~l--HiDIMDG~FVpN~tfgp~~I~~ir~~-t~~plDvHLMV~~-- 126 (246)
.+-.+..+|+.++...+..++.++++++.+.|+|.+ =+|..+.. ++...=.+.+.++++. .++|+-+++=...
T Consensus 10 ~~~~~~~~i~v~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~--~~~~~~~~~~~~l~~~~~~~PiI~T~R~~~eG 87 (253)
T PRK02412 10 VIGEGAPKIIVPIMGKTLEEVLAEALAISKYDADIIEWRADFLEKI--SDVESVLAAAPAIREKFAGKPLLFTFRTAKEG 87 (253)
T ss_pred EeCCCCcEEEEEeCCCCHHHHHHHHHHHhhcCCCEEEEEechhhcc--CCHHHHHHHHHHHHHhcCCCcEEEEECChhhC
Confidence 445667899999999999999999998888888875 45665531 2222223345556553 4678888886543
Q ss_pred ------cccchH---HHHhcC-CCEEEEccCCcccccHHHHHHHHHHcCCcEEEEEc--CCCCh-HHHHHhhh
Q 025927 127 ------PEQRVP---DFIKAG-ADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLN--PATSL-SAIECVLD 186 (246)
Q Consensus 127 ------P~~~i~---~~~~ag-ad~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAln--P~Tpv-e~l~~~l~ 186 (246)
.+.|++ ...+.| +|+|-+-+.. ......++++.+|+.|.++=+... ..||- +.+..++.
T Consensus 88 G~~~~~~~~~~~ll~~~~~~~~~d~vDiEl~~-~~~~~~~l~~~~~~~~~kvI~S~H~f~~tP~~~~l~~~~~ 159 (253)
T PRK02412 88 GEIALSDEEYLALIKAVIKSGLPDYIDVELFS-GKDVVKEMVAFAHEHGVKVVLSYHDFEKTPPKEEIVERLR 159 (253)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCCEEEEeccC-ChHHHHHHHHHHHHcCCEEEEeeCCCCCCcCHHHHHHHHH
Confidence 123433 445567 8999986653 123456677778888888777664 24662 44444443
No 214
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB. Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.
Probab=87.35 E-value=17 Score=35.24 Aligned_cols=134 Identities=13% Similarity=0.223 Sum_probs=80.7
Q ss_pred cccChhhHHHHHHHHHHcCCCEEEe-eeccCcc-cCCC-----CCCHHHHhhcccCCCCCeeEEEeccCcc----cchHH
Q 025927 65 LSANFAKLGEQVKAVELAGCDWIHV-DVMDGRF-VPNI-----TIGPLVVDALRPVTDLPLDVHLMIVEPE----QRVPD 133 (246)
Q Consensus 65 l~aD~~~l~~~i~~l~~~g~d~lHi-DIMDG~F-VpN~-----tfgp~~I~~ir~~t~~plDvHLMV~~P~----~~i~~ 133 (246)
-+-++..+-+|++.+.+.|+..+.+ |.--+.| -..+ .| .+.++.|.+..++ ..+.+...+|. .+++.
T Consensus 172 rsr~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~g~d~~~~~~~l-~~Ll~~l~~~~~~-~~ir~~~~~p~~l~~ell~~ 249 (438)
T TIGR01574 172 ISRPFDDILQEVQKLAEKGVREITLLGQNVNAYRGKDFEGKTMDF-SDLLRELSTIDGI-ERIRFTSSHPLDFDDDLIEV 249 (438)
T ss_pred cccCHHHHHHHHHHHHHcCCeEEEEEecccCCccCCCCCCCcccH-HHHHHHHHhcCCc-eEEEEecCCcccCCHHHHHH
Confidence 3567788889999999999988765 2222233 1111 12 2456666543343 24566666775 46777
Q ss_pred HHhcC--CCEEEEccCCcc------------cccHHHHHHHHHHc--CCcEE--EEEc-CCCChHHHHHhhhh-----cc
Q 025927 134 FIKAG--ADIVSVHCEQSS------------TIHLHRTLNQIKDL--GAKAG--VVLN-PATSLSAIECVLDV-----VD 189 (246)
Q Consensus 134 ~~~ag--ad~It~H~E~~~------------~~~~~~~i~~Ik~~--G~k~G--lAln-P~Tpve~l~~~l~~-----vD 189 (246)
+.++| +.++.+-+|+.+ ..+..+.++.+|+. |+.++ +.+. |+-..+.++..++. .|
T Consensus 250 l~~~g~~~~~l~iglQSgsd~vLk~m~R~~t~~~~~~~v~~ir~~~~~i~i~~d~IvG~PgEt~ed~~~tl~~i~~~~~~ 329 (438)
T TIGR01574 250 FANNPKLCKSMHLPVQSGSSEILKLMKRGYTREWYLNLVRKLRAACPNVSISTDIIVGFPGETEEDFEETLDLLREVEFD 329 (438)
T ss_pred HHhCCCccCceeeCCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEeeCEEEeCCCCCHHHHHHHHHHHHhcCCC
Confidence 77788 889998898742 12345677788876 54443 3343 66666666655443 45
Q ss_pred eEEE--EeecCCC
Q 025927 190 LVLI--MSVNPGF 200 (246)
Q Consensus 190 ~VLv--MsV~PGf 200 (246)
.+.+ .+-.||-
T Consensus 330 ~~~~~~~sp~pGT 342 (438)
T TIGR01574 330 SAFSFIYSPRPGT 342 (438)
T ss_pred eeeeEEecCCCCC
Confidence 5544 5566773
No 215
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=87.24 E-value=5.2 Score=39.10 Aligned_cols=163 Identities=17% Similarity=0.275 Sum_probs=89.2
Q ss_pred hhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCe--eEEEecc-----Cc--ccchHHHHhcCCC
Q 025927 70 AKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL--DVHLMIV-----EP--EQRVPDFIKAGAD 140 (246)
Q Consensus 70 ~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~pl--DvHLMV~-----~P--~~~i~~~~~agad 140 (246)
..+.+-++.+.+.+..++=+-=-+|+++-=++.. ++++.+. +..... +=+|+|. ++ ..-++.++++|+|
T Consensus 161 ~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~-DIl~~~~-~~~~~~d~~g~l~V~aav~~~~~~~~r~~~L~~aG~d 238 (450)
T TIGR01302 161 IDLEEALKVLHEHRIEKLPVVDKNGELVGLITMK-DIVKRRK-FPHASKDENGRLIVGAAVGTREFDKERAEALVKAGVD 238 (450)
T ss_pred CcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhH-Hhhhccc-CCcceEeCCCCEEEEEEecCchhHHHHHHHHHHhCCC
Confidence 3466777788887777665533345544323331 2333321 111100 1133332 22 3457788999999
Q ss_pred EEEEccCCcccccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhhh-cceEEEEeecCCC--CCCccc---HHHHHHHH
Q 025927 141 IVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV-VDLVLIMSVNPGF--GGQSFI---ESQVKKIS 214 (246)
Q Consensus 141 ~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~~-vD~VLvMsV~PGf--gGQ~F~---~~~l~KI~ 214 (246)
.|.+-.-.-......+.+++||+.--.+=|...--...+....+++. +|.|-| ++-||. ..+.+. ...+.-+.
T Consensus 239 ~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~aGad~i~v-g~g~G~~~~t~~~~~~g~p~~~~i~ 317 (450)
T TIGR01302 239 VIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDAGADGLRV-GIGPGSICTTRIVAGVGVPQITAVY 317 (450)
T ss_pred EEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHhCCCEEEE-CCCCCcCCccceecCCCccHHHHHH
Confidence 98875421012356678888887622344444445666777777664 999877 777772 222211 11234445
Q ss_pred HHHHHHHhcCCCCeEEEeCCCCh
Q 025927 215 DLRRMCLEKGVNPWIEVDGGVGP 237 (246)
Q Consensus 215 ~lr~l~~~~~~~~~I~VDGGI~~ 237 (246)
++++...+. +..|..||||+.
T Consensus 318 ~~~~~~~~~--~vpviadGGi~~ 338 (450)
T TIGR01302 318 DVAEYAAQS--GIPVIADGGIRY 338 (450)
T ss_pred HHHHHHhhc--CCeEEEeCCCCC
Confidence 555554443 356889999975
No 216
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=87.17 E-value=31 Score=34.56 Aligned_cols=132 Identities=17% Similarity=0.278 Sum_probs=80.4
Q ss_pred cccChhhHHHHHHHHHHcCCCEEEeeeccCccc---CCCC---CC-HHHHhhcccCCCCCeeEEEeccCcc----cchHH
Q 025927 65 LSANFAKLGEQVKAVELAGCDWIHVDVMDGRFV---PNIT---IG-PLVVDALRPVTDLPLDVHLMIVEPE----QRVPD 133 (246)
Q Consensus 65 l~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FV---pN~t---fg-p~~I~~ir~~t~~plDvHLMV~~P~----~~i~~ 133 (246)
-+-++.++-+|++.+.+.|+..+.+ .|.+|. .++. .. .+.++.|.+. +++ .+-++..+|. ..++.
T Consensus 239 Rsr~~e~Ii~Ei~~l~~~G~keI~L--~g~n~~~yg~d~~~~~~~l~~Ll~~I~~~-~i~-~ir~~s~~P~~i~deli~~ 314 (509)
T PRK14327 239 RSRRPEDIIQEVRHLARQGYKEITL--LGQNVNAYGKDFEDIEYGLGDLMDEIRKI-DIP-RVRFTTSHPRDFDDHLIEV 314 (509)
T ss_pred eeCCHHHHHHHHHHHHHCCCcEEEE--EeeccccCcccccccchHHHHHHHHHHhC-CCc-eEEEeecCcccCCHHHHHH
Confidence 3667788999999999999887753 333321 1111 11 2456666554 332 3556677886 46777
Q ss_pred HHhcC--CCEEEEccCCcc------------cccHHHHHHHHHHc--CCcEE--EEEc-CCCChHHHHHhhhh-----cc
Q 025927 134 FIKAG--ADIVSVHCEQSS------------TIHLHRTLNQIKDL--GAKAG--VVLN-PATSLSAIECVLDV-----VD 189 (246)
Q Consensus 134 ~~~ag--ad~It~H~E~~~------------~~~~~~~i~~Ik~~--G~k~G--lAln-P~Tpve~l~~~l~~-----vD 189 (246)
+.++| +..+.+-+|+.+ .++..++++.+|+. |+..+ +.+. |+-..+.++.-++. .|
T Consensus 315 m~~~g~~~~~l~lgvQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~~p~i~i~tdiIvGfPgET~edf~~Tl~~v~~l~~d 394 (509)
T PRK14327 315 LAKGGNLVEHIHLPVQSGSTEVLKIMARKYTRESYLELVRKIKEAIPNVALTTDIIVGFPNETDEQFEETLSLYREVGFD 394 (509)
T ss_pred HHhcCCccceEEeccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCcEEeeeEEEeCCCCCHHHHHHHHHHHHHcCCC
Confidence 77788 568999999741 22356778888887 44433 2333 66666666554443 45
Q ss_pred eEEE--EeecCCC
Q 025927 190 LVLI--MSVNPGF 200 (246)
Q Consensus 190 ~VLv--MsV~PGf 200 (246)
.+.+ ++-.||-
T Consensus 395 ~~~~f~ysprpGT 407 (509)
T PRK14327 395 HAYTFIYSPREGT 407 (509)
T ss_pred eEEEeeeeCCCCC
Confidence 5554 5666773
No 217
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=87.12 E-value=11 Score=35.30 Aligned_cols=96 Identities=16% Similarity=0.166 Sum_probs=55.1
Q ss_pred cchHHHHhcCCCEEEEccCCcccccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhhh-cceEEEEeecCCC-CCCccc
Q 025927 129 QRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV-VDLVLIMSVNPGF-GGQSFI 206 (246)
Q Consensus 129 ~~i~~~~~agad~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~~-vD~VLvMsV~PGf-gGQ~F~ 206 (246)
..++.+.+.+++.|+++.-. .+..+++.+|+.|+++-..+ ++++.....++. +|.|.+-.-+-|- .|...
T Consensus 104 ~~~~~~~~~~~~~v~~~~G~----p~~~~i~~l~~~gi~v~~~v---~s~~~A~~a~~~G~D~iv~qG~eAGGH~g~~~- 175 (330)
T PF03060_consen 104 EQLDVALEAKPDVVSFGFGL----PPPEVIERLHAAGIKVIPQV---TSVREARKAAKAGADAIVAQGPEAGGHRGFEV- 175 (330)
T ss_dssp HHHHHHHHS--SEEEEESSS----C-HHHHHHHHHTT-EEEEEE---SSHHHHHHHHHTT-SEEEEE-TTSSEE---SS-
T ss_pred cccccccccceEEEEeeccc----chHHHHHHHHHcCCcccccc---CCHHHHHHhhhcCCCEEEEeccccCCCCCccc-
Confidence 33444555566799999752 23678999999998865543 677777776654 9999988777643 33121
Q ss_pred HHHHHHHHHHHHHHHhcCCCCeEEEeCCCCh
Q 025927 207 ESQVKKISDLRRMCLEKGVNPWIEVDGGVGP 237 (246)
Q Consensus 207 ~~~l~KI~~lr~l~~~~~~~~~I~VDGGI~~ 237 (246)
..++.=+.++++..+ .-+-+=|||.-
T Consensus 176 ~~~~~L~~~v~~~~~-----iPViaAGGI~d 201 (330)
T PF03060_consen 176 GSTFSLLPQVRDAVD-----IPVIAAGGIAD 201 (330)
T ss_dssp G-HHHHHHHHHHH-S-----S-EEEESS--S
T ss_pred cceeeHHHHHhhhcC-----CcEEEecCcCC
Confidence 135555566666543 56778999953
No 218
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=87.05 E-value=1.5 Score=41.74 Aligned_cols=171 Identities=22% Similarity=0.222 Sum_probs=105.4
Q ss_pred Eeee--ecccChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccC-CCCCeeEEEeccCcccchHHHHh
Q 025927 60 VSPS--ILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIK 136 (246)
Q Consensus 60 IsPS--Il~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~-t~~plDvHLMV~~P~~~i~~~~~ 136 (246)
-||| +++-| .+..+..+.++++|+..|=+ ..|..| |.-+.+.++.+|+. +++|+-..=-+-+|.+..+. ..
T Consensus 128 ASPSkG~I~~~-~dp~~iA~~Ye~~GA~aISV-LTd~~~---F~Gs~e~L~~vr~~~v~lPvLrKDFIID~yQI~eA-r~ 201 (338)
T PLN02460 128 ASPSRGVLREN-FDPVEIAQAYEKGGAACLSV-LTDEKY---FQGSFENLEAIRNAGVKCPLLCKEFIVDAWQIYYA-RS 201 (338)
T ss_pred CCCCCCccCCC-CCHHHHHHHHHhCCCcEEEE-ecCcCc---CCCCHHHHHHHHHcCCCCCEeeccccCCHHHHHHH-HH
Confidence 4565 34444 35667788899999999987 667666 66678899999997 88887766666677664433 55
Q ss_pred cCCCEEEEccCCcccccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhhhcceEEEEeecC-CCCCCcccHHHHHHHHH
Q 025927 137 AGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNP-GFGGQSFIESQVKKISD 215 (246)
Q Consensus 137 agad~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~~vD~VLvMsV~P-GfgGQ~F~~~~l~KI~~ 215 (246)
+|||.|-.=+..+...++..+++..+++|+.+=|=+.- -++++..+.. +-.-+..||- .-..-....++..++..
T Consensus 202 ~GADAVLLIaaiL~~~~L~~l~~~A~~LGme~LVEVH~---~~ElerAl~~-~ga~iIGINNRdL~Tf~vDl~~t~~L~~ 277 (338)
T PLN02460 202 KGADAILLIAAVLPDLDIKYMLKICKSLGMAALIEVHD---EREMDRVLGI-EGVELIGINNRSLETFEVDISNTKKLLE 277 (338)
T ss_pred cCCCcHHHHHHhCCHHHHHHHHHHHHHcCCeEEEEeCC---HHHHHHHHhc-CCCCEEEEeCCCCCcceECHHHHHHHhh
Confidence 79998887766544457899999999999998777663 3445454542 1123344443 22233444454544432
Q ss_pred HHH--HHHhcCCCCeEEEeCCCCh-hhhhh
Q 025927 216 LRR--MCLEKGVNPWIEVDGGVGP-KNAYK 242 (246)
Q Consensus 216 lr~--l~~~~~~~~~I~VDGGI~~-e~i~~ 242 (246)
... +++.. +..+-.-+||+. +.+..
T Consensus 278 ~~~~~~i~~~--~~~~VsESGI~t~~Dv~~ 305 (338)
T PLN02460 278 GERGEQIREK--GIIVVGESGLFTPDDVAY 305 (338)
T ss_pred hccccccCCC--CeEEEECCCCCCHHHHHH
Confidence 110 22111 233444678753 34433
No 219
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=86.96 E-value=7.1 Score=37.40 Aligned_cols=107 Identities=22% Similarity=0.345 Sum_probs=75.4
Q ss_pred cEEeeeecccChhhHH---HHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCe--eEEEeccCcccchH
Q 025927 58 IIVSPSILSANFAKLG---EQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL--DVHLMIVEPEQRVP 132 (246)
Q Consensus 58 ~~IsPSIl~aD~~~l~---~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~pl--DvHLMV~~P~~~i~ 132 (246)
.+.-.|+.+.|..+.+ +|+++|+++|+|.+-+=|-|-.=. +-++.|++.+++|+ |+|. .. . +.-
T Consensus 19 PI~VQSMtnt~T~Dv~atv~QI~~L~~aGceiVRvavp~~~~A-------~al~~I~~~~~iPlVADIHF--d~-~-lAl 87 (346)
T TIGR00612 19 PIVVQSMTNTDTIDIDSTVAQIRALEEAGCDIVRVTVPDRESA-------AAFEAIKEGTNVPLVADIHF--DY-R-LAA 87 (346)
T ss_pred cEEEEecCCCCchhHHHHHHHHHHHHHcCCCEEEEcCCCHHHH-------HhHHHHHhCCCCCEEEeeCC--Cc-H-HHH
Confidence 3444566666666555 788999999999999988775443 34666777777776 5565 21 1 122
Q ss_pred HHHhcCCCEEEEccCCcc-cccHHHHHHHHHHcCCcEEEEEcCC
Q 025927 133 DFIKAGADIVSVHCEQSS-TIHLHRTLNQIKDLGAKAGVVLNPA 175 (246)
Q Consensus 133 ~~~~agad~It~H~E~~~-~~~~~~~i~~Ik~~G~k~GlAlnP~ 175 (246)
.-++.|+|-|-+-+=+.. .+.+..+++..|++|+-.=+-.|-+
T Consensus 88 ~a~~~g~dkiRINPGNig~~e~v~~vv~~ak~~~ipIRIGVN~G 131 (346)
T TIGR00612 88 LAMAKGVAKVRINPGNIGFRERVRDVVEKARDHGKAMRIGVNHG 131 (346)
T ss_pred HHHHhccCeEEECCCCCCCHHHHHHHHHHHHHCCCCEEEecCCC
Confidence 336679999998876543 3467889999999998887777865
No 220
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=86.90 E-value=17 Score=33.72 Aligned_cols=113 Identities=14% Similarity=0.205 Sum_probs=66.9
Q ss_pred ChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCC-HHHHhhcccCCCCCeeEEEeccCcc---cchHHHHhcCCCEEE
Q 025927 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIG-PLVVDALRPVTDLPLDVHLMIVEPE---QRVPDFIKAGADIVS 143 (246)
Q Consensus 68 D~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfg-p~~I~~ir~~t~~plDvHLMV~~P~---~~i~~~~~agad~It 143 (246)
++..+.+-++.+.+.|+..+.+ ..|. |-+--. .++++.+++..++ .++.+ +.|.. ++++.+.++|.+.|.
T Consensus 46 s~eei~~li~~~~~~Gv~~I~~--tGGE--Pllr~dl~~li~~i~~~~~l-~~i~i-tTNG~ll~~~~~~L~~aGl~~v~ 119 (329)
T PRK13361 46 SLEELAWLAQAFTELGVRKIRL--TGGE--PLVRRGCDQLVARLGKLPGL-EELSL-TTNGSRLARFAAELADAGLKRLN 119 (329)
T ss_pred CHHHHHHHHHHHHHCCCCEEEE--ECcC--CCccccHHHHHHHHHhCCCC-ceEEE-EeChhHHHHHHHHHHHcCCCeEE
Confidence 4455666677777788886655 5665 322111 2455566554322 14433 44443 467788899999999
Q ss_pred EccCCcc------------cccHHHHHHHHHHcCC-cE--EEEEcCCCChHHHHHhhh
Q 025927 144 VHCEQSS------------TIHLHRTLNQIKDLGA-KA--GVVLNPATSLSAIECVLD 186 (246)
Q Consensus 144 ~H~E~~~------------~~~~~~~i~~Ik~~G~-k~--GlAlnP~Tpve~l~~~l~ 186 (246)
+.+++.. .+.+.+.++.+++.|+ .+ ..++.++...+++.++++
T Consensus 120 ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~in~v~~~g~N~~ei~~~~~ 177 (329)
T PRK13361 120 ISLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIKLNAVILRGQNDDEVLDLVE 177 (329)
T ss_pred EEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceEEEEEEECCCCHHHHHHHHH
Confidence 9888641 1124455666678887 44 445666666677766654
No 221
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=86.87 E-value=3.8 Score=32.82 Aligned_cols=75 Identities=12% Similarity=0.107 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEecc--C-cccchHHHHhcCCCEEEEccC
Q 025927 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIV--E-PEQRVPDFIKAGADIVSVHCE 147 (246)
Q Consensus 71 ~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~--~-P~~~i~~~~~agad~It~H~E 147 (246)
...+.+......+...+.+ .+|....+- .-.+.++.+++.. ..+.+.+.+. . ...+++.+.++|.+.+.+-+|
T Consensus 32 ~~~~~~~~~~~~~~~~i~~--~ggep~~~~-~~~~~i~~~~~~~-~~~~~~i~T~~~~~~~~~~~~l~~~g~~~i~i~le 107 (204)
T cd01335 32 EILDIVLEAKERGVEVVIL--TGGEPLLYP-ELAELLRRLKKEL-PGFEISIETNGTLLTEELLKELKELGLDGVGVSLD 107 (204)
T ss_pred HHHHHHHHHHhcCceEEEE--eCCcCCccH-hHHHHHHHHHhhC-CCceEEEEcCcccCCHHHHHHHHhCCCceEEEEcc
Confidence 3444455555556655555 556554333 2345566665542 1234444433 2 357888999999999999999
Q ss_pred Cc
Q 025927 148 QS 149 (246)
Q Consensus 148 ~~ 149 (246)
+.
T Consensus 108 ~~ 109 (204)
T cd01335 108 SG 109 (204)
T ss_pred cC
Confidence 64
No 222
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=86.83 E-value=1.7 Score=39.82 Aligned_cols=77 Identities=22% Similarity=0.186 Sum_probs=52.5
Q ss_pred ChhhHHHHHHHHHHcCCCEEEeeeccCcccCC---------CCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcC
Q 025927 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPN---------ITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAG 138 (246)
Q Consensus 68 D~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN---------~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~ag 138 (246)
+.....+-++.|++.|+|++|+--.+... +. -.+..+.++.+|+.+++|+-+-=-+..|+...+.+..-|
T Consensus 226 ~~~e~~~la~~l~~~G~d~i~vs~g~~~~-~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~~~a~~~l~~g~ 304 (327)
T cd02803 226 TLEEAIEIAKALEEAGVDALHVSGGSYES-PPPIIPPPYVPEGYFLELAEKIKKAVKIPVIAVGGIRDPEVAEEILAEGK 304 (327)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCcc-cccccCCCCCCcchhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCC
Confidence 34455666889999999999987654321 11 134557888888888888776666667777554444348
Q ss_pred CCEEEEc
Q 025927 139 ADIVSVH 145 (246)
Q Consensus 139 ad~It~H 145 (246)
+|.|.+=
T Consensus 305 aD~V~ig 311 (327)
T cd02803 305 ADLVALG 311 (327)
T ss_pred CCeeeec
Confidence 9999873
No 223
>PLN02475 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
Probab=86.78 E-value=3.5 Score=43.25 Aligned_cols=142 Identities=18% Similarity=0.277 Sum_probs=78.2
Q ss_pred hHHHHHHHHHHcCCCEEEeeeccCcccCCCC-CC-----HHHHhhcccCC-----CCCeeEEEeccCcccchHHHHhcCC
Q 025927 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNIT-IG-----PLVVDALRPVT-----DLPLDVHLMIVEPEQRVPDFIKAGA 139 (246)
Q Consensus 71 ~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~t-fg-----p~~I~~ir~~t-----~~plDvHLMV~~P~~~i~~~~~aga 139 (246)
.+.+|++.|+++|+++|.+|=-.-.--+... .. ...+++++..+ +..+..|+.=.|-...++.+.+..+
T Consensus 587 alr~Ev~~L~~aG~~~IQIDEPal~e~~~~~~~~~~~~l~~av~af~~~~~~v~~~~~I~~H~C~gnf~~I~~~i~~l~~ 666 (766)
T PLN02475 587 AIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDA 666 (766)
T ss_pred HHHHHHHHHHHcCCCEEEEeCcchhhcCCcCccCHHHHHHHHHHHHHHHHhcCCCCCEEEEEEecCCcHHHHHHHHhCCC
Confidence 4568999999999999999954332111110 00 11233333322 3346778877787788899988999
Q ss_pred CEEEEccCCcccccHHHHHHHHHH---cCCcEEEEE-cCC-CCh---HHHHHhh----hhcceEEEEeecC--CCCCCcc
Q 025927 140 DIVSVHCEQSSTIHLHRTLNQIKD---LGAKAGVVL-NPA-TSL---SAIECVL----DVVDLVLIMSVNP--GFGGQSF 205 (246)
Q Consensus 140 d~It~H~E~~~~~~~~~~i~~Ik~---~G~k~GlAl-nP~-Tpv---e~l~~~l----~~vD~VLvMsV~P--GfgGQ~F 205 (246)
|.+++ |.. ..-...+..+++ .+.++|+-+ +.. ..+ |.+...| +.++ .--+.|+| ||.-.+.
T Consensus 667 D~~~~--E~~--rs~~~~l~~l~~~~~~~~~IglGViD~~s~~ves~Eei~~rI~~a~~~v~-~e~l~vnPDCGl~tr~~ 741 (766)
T PLN02475 667 DVITI--ENS--RSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLE-SNILWVNPDCGLKTRKY 741 (766)
T ss_pred CEEEE--EcC--CCChhhhHHHHhhcCCCCeEEEEEEcCCCCCCCCHHHHHHHHHHHHHhCC-cceEEEcCCCCcccCCH
Confidence 99994 642 221233444443 234454433 222 222 3333333 2333 23467788 6554433
Q ss_pred cHHHHHHHHHHHH
Q 025927 206 IESQVKKISDLRR 218 (246)
Q Consensus 206 ~~~~l~KI~~lr~ 218 (246)
+++..|++.+.+
T Consensus 742 -~~~~~kL~~mv~ 753 (766)
T PLN02475 742 -PEVKPALKNMVA 753 (766)
T ss_pred -HHHHHHHHHHHH
Confidence 456667766544
No 224
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=86.73 E-value=4 Score=40.98 Aligned_cols=127 Identities=18% Similarity=0.249 Sum_probs=79.9
Q ss_pred hhHHHHHHHHHHcC--CCEEEeeeccCcccCCCCCCHHH----HhhcccC-CC---------------------CCeeEE
Q 025927 70 AKLGEQVKAVELAG--CDWIHVDVMDGRFVPNITIGPLV----VDALRPV-TD---------------------LPLDVH 121 (246)
Q Consensus 70 ~~l~~~i~~l~~~g--~d~lHiDIMDG~FVpN~tfgp~~----I~~ir~~-t~---------------------~plDvH 121 (246)
......++++++.| +|.+-+=+|+|+|. ++..+. ++.+.+. .+ ..-.+-
T Consensus 118 ~q~~~rl~~l~~~g~~~~kvE~i~~GGTft---~l~~~y~~~fl~~~~~a~~~~~~~~~~~~~~~~~~~~ne~a~~~~vg 194 (522)
T TIGR01211 118 EQVTARLEQLEQIGHPVDKVELIIMGGTFP---ARDLDYQEWFIKRCLNAMNGFDQELKGNSTLEEAIRINETSKHRCVG 194 (522)
T ss_pred HHHHHHHHHHHHhCCCCceEEEEEECCCcc---cCCHHHHHHHHHHHHHHhccccccccccchHHHHHHhhhcccCCeEE
Confidence 45556677888765 66666669999983 444333 3333221 11 011233
Q ss_pred Eec-cCcc----cchHHHHhcCCCEEEEccCCcc------------cccHHHHHHHHHHcCCcEEEEEcCCCChHH----
Q 025927 122 LMI-VEPE----QRVPDFIKAGADIVSVHCEQSS------------TIHLHRTLNQIKDLGAKAGVVLNPATSLSA---- 180 (246)
Q Consensus 122 LMV-~~P~----~~i~~~~~agad~It~H~E~~~------------~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~---- 180 (246)
+-+ .+|+ ..++.|.++|++.|.+=+|+.. ..+..+.++.+|++|+++++=+-++-|-+.
T Consensus 195 itiEtRPD~i~~e~L~~L~~~G~~rVslGVQS~~d~VL~~inRght~~~v~~Ai~~lr~~G~~v~~~LM~GLPgqt~e~~ 274 (522)
T TIGR01211 195 LTIETRPDYCREEHIDRMLKLGATRVELGVQTIYNDILERTKRGHTVRDVVEATRLLRDAGLKVVYHIMPGLPGSSFERD 274 (522)
T ss_pred EEEEEcCCcCCHHHHHHHHHcCCCEEEEECccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeEEEEeecCCCCCCHHHH
Confidence 333 2565 4678889999999999998751 223557888899999999998888877533
Q ss_pred ---HHHhhh----hcceEEEE--eecCC
Q 025927 181 ---IECVLD----VVDLVLIM--SVNPG 199 (246)
Q Consensus 181 ---l~~~l~----~vD~VLvM--sV~PG 199 (246)
++.++. ..|.|-+. .|.||
T Consensus 275 ~~t~~~l~~~~~l~pD~Ikiypl~V~~g 302 (522)
T TIGR01211 275 LEMFREIFEDPRFKPDMLKIYPTLVTRG 302 (522)
T ss_pred HHHHHHHHhccCCCcCEEEEecceeeCC
Confidence 333332 36777664 46666
No 225
>PLN02334 ribulose-phosphate 3-epimerase
Probab=86.68 E-value=19 Score=31.56 Aligned_cols=144 Identities=16% Similarity=0.225 Sum_probs=82.6
Q ss_pred eeeecccChhhHHHHHHHHHHcCCCEE--Eeee--ccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHh
Q 025927 61 SPSILSANFAKLGEQVKAVELAGCDWI--HVDV--MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIK 136 (246)
Q Consensus 61 sPSIl~aD~~~l~~~i~~l~~~g~d~l--HiDI--MDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~ 136 (246)
..=++..|+.+ .++.+.++|+|++ |+.- .| .. ...++.+++. ++.+-+=+--.+|...++.+.+
T Consensus 69 ~vhlmv~~p~d---~~~~~~~~gad~v~vH~~q~~~d-~~-------~~~~~~i~~~-g~~iGls~~~~t~~~~~~~~~~ 136 (229)
T PLN02334 69 DCHLMVTNPED---YVPDFAKAGASIFTFHIEQASTI-HL-------HRLIQQIKSA-GMKAGVVLNPGTPVEAVEPVVE 136 (229)
T ss_pred EEEeccCCHHH---HHHHHHHcCCCEEEEeeccccch-hH-------HHHHHHHHHC-CCeEEEEECCCCCHHHHHHHHh
Confidence 44456555444 4566677899999 8873 33 21 3567777654 3333322222256677777766
Q ss_pred cC-CCEE---EEccCCccc---ccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhhh-cceEEEEeecCCCCCCcccHH
Q 025927 137 AG-ADIV---SVHCEQSST---IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIES 208 (246)
Q Consensus 137 ag-ad~I---t~H~E~~~~---~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~~-vD~VLvMsV~PGfgGQ~F~~~ 208 (246)
.| +|+| ++|.-.... ....+.++++|+.....-+..--+-..+.+.+++.. +|.|.+-|-- |+ .+ +
T Consensus 137 ~~~~Dyi~~~~v~pg~~~~~~~~~~~~~i~~~~~~~~~~~I~a~GGI~~e~i~~l~~aGad~vvvgsai--~~-~~---d 210 (229)
T PLN02334 137 KGLVDMVLVMSVEPGFGGQSFIPSMMDKVRALRKKYPELDIEVDGGVGPSTIDKAAEAGANVIVAGSAV--FG-AP---D 210 (229)
T ss_pred ccCCCEEEEEEEecCCCccccCHHHHHHHHHHHHhCCCCcEEEeCCCCHHHHHHHHHcCCCEEEEChHH--hC-CC---C
Confidence 64 9999 666532211 123345666666533334666667788888888764 8888665432 32 22 2
Q ss_pred HHHHHHHHHHHHHh
Q 025927 209 QVKKISDLRRMCLE 222 (246)
Q Consensus 209 ~l~KI~~lr~l~~~ 222 (246)
..+.++++++.+.+
T Consensus 211 ~~~~~~~l~~~~~~ 224 (229)
T PLN02334 211 YAEVISGLRASVEK 224 (229)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455666665544
No 226
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=86.65 E-value=7.6 Score=37.81 Aligned_cols=137 Identities=11% Similarity=0.178 Sum_probs=82.2
Q ss_pred cccChhhHHHHHHHHHHcCCCEEEeeeccCc---ccCC-----CCCCHHHHhhcccCCCCCeeEEEeccCccc----chH
Q 025927 65 LSANFAKLGEQVKAVELAGCDWIHVDVMDGR---FVPN-----ITIGPLVVDALRPVTDLPLDVHLMIVEPEQ----RVP 132 (246)
Q Consensus 65 l~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~---FVpN-----~tfgp~~I~~ir~~t~~plDvHLMV~~P~~----~i~ 132 (246)
-+-++.++-+|++.+.+.|++.+-+ .|.+ |-.+ ..| .+.++.|.+..++. .+.+...+|.. .++
T Consensus 175 rsr~~e~Iv~Ei~~l~~~G~~eI~l--~~~~~~~yg~d~~~~~~~l-~~Ll~~l~~~~g~~-~ir~~~~~p~~i~~ell~ 250 (446)
T PRK14337 175 KSRSSAAVLDECRALVDRGAREITL--LGQNVNSYGQDKHGDGTSF-AQLLHKVAALPGLE-RLRFTTPHPKDIAPEVIE 250 (446)
T ss_pred eeCCHHHHHHHHHHHHHCCCeEEEE--EecCccccccCCCCCCccH-HHHHHHHHhcCCCc-EEEEccCCcccCCHHHHH
Confidence 5567788889999999999876553 3322 2211 122 23455555543432 57777778854 555
Q ss_pred HHHhc--CCCEEEEccCCcc------------cccHHHHHHHHHHc--CCcEE--EEEc-CCCChHHHHHhhhh-----c
Q 025927 133 DFIKA--GADIVSVHCEQSS------------TIHLHRTLNQIKDL--GAKAG--VVLN-PATSLSAIECVLDV-----V 188 (246)
Q Consensus 133 ~~~~a--gad~It~H~E~~~------------~~~~~~~i~~Ik~~--G~k~G--lAln-P~Tpve~l~~~l~~-----v 188 (246)
.+.+. |+.++.+-+|+.+ .++..+.++.+|+. |+.++ +.+. |+-..+.++..++. +
T Consensus 251 ~l~~~~~~~~~l~iglQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~~~~i~i~~d~IvG~PgET~ed~~~tl~~l~~~~~ 330 (446)
T PRK14337 251 AFGELPNLCPRLHLPLQSGSDRILKAMGRKYDMARYLDIVTDLRAARPDIALTTDLIVGFPGETEEDFEQTLEAMRTVGF 330 (446)
T ss_pred HHHhCCcccCeEEECCCCCCHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEECCCCCHHHHHHHHHHHHhcCC
Confidence 56653 5789999999752 12355777788877 44433 3333 67667766655543 5
Q ss_pred ceEEE--EeecCCCCCCcc
Q 025927 189 DLVLI--MSVNPGFGGQSF 205 (246)
Q Consensus 189 D~VLv--MsV~PGfgGQ~F 205 (246)
|.+.+ .|-.||-....+
T Consensus 331 ~~~~~f~ysp~pgT~a~~~ 349 (446)
T PRK14337 331 ASSFSFCYSDRPGTRAEML 349 (446)
T ss_pred CeeEEEecCCCCCCccccC
Confidence 66555 566788433333
No 227
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=86.57 E-value=24 Score=35.14 Aligned_cols=155 Identities=12% Similarity=0.210 Sum_probs=84.2
Q ss_pred hhHHHHHHHHHH----cCCCEEEeeeccCcccCCCCCCHHHHhhc----ccCC-CCCeeEEEec--cCcc----cchHHH
Q 025927 70 AKLGEQVKAVEL----AGCDWIHVDVMDGRFVPNITIGPLVVDAL----RPVT-DLPLDVHLMI--VEPE----QRVPDF 134 (246)
Q Consensus 70 ~~l~~~i~~l~~----~g~d~lHiDIMDG~FVpN~tfgp~~I~~i----r~~t-~~plDvHLMV--~~P~----~~i~~~ 134 (246)
..|.+|++.+.+ .|...-.+=+-.|+. ..+.++.+..| ++.. ++.-...+.+ -+|+ ..++.+
T Consensus 199 ~aL~~EI~~~~~~~~~~~~~v~tIyfGGGTP---t~L~~~~L~~Ll~~i~~~f~~~~~~~EiTvE~grPd~it~e~L~~L 275 (488)
T PRK08207 199 EALHYEIEEIGKYLKEKGLKITTIYFGGGTP---TSLTAEELERLLEEIYENFPDVKNVKEFTVEAGRPDTITEEKLEVL 275 (488)
T ss_pred HHHHHHHHHHHhhhcccCCceeEEEEeCCCc---cCCCHHHHHHHHHHHHHhccccCCceEEEEEcCCCCCCCHHHHHHH
Confidence 445555555422 133333444456654 33445555444 3321 2211123333 3665 457788
Q ss_pred HhcCCCEEEEccCCcc------------cccHHHHHHHHHHcCC-cEE--EEEc-CCCChHHHHHhhhh-----cceEEE
Q 025927 135 IKAGADIVSVHCEQSS------------TIHLHRTLNQIKDLGA-KAG--VVLN-PATSLSAIECVLDV-----VDLVLI 193 (246)
Q Consensus 135 ~~agad~It~H~E~~~------------~~~~~~~i~~Ik~~G~-k~G--lAln-P~Tpve~l~~~l~~-----vD~VLv 193 (246)
.++|+++|++=+|+.. .++..+.++.+|++|+ .++ +.+. |+...+.+..-++. +|.|.+
T Consensus 276 k~~Gv~RISIGvQS~~d~vLk~igR~ht~e~v~~ai~~ar~~Gf~~In~DLI~GLPgEt~ed~~~tl~~l~~L~pd~isv 355 (488)
T PRK08207 276 KKYGVDRISINPQTMNDETLKAIGRHHTVEDIIEKFHLAREMGFDNINMDLIIGLPGEGLEEVKHTLEEIEKLNPESLTV 355 (488)
T ss_pred HhcCCCeEEEcCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhcCcCEEEE
Confidence 8899999999999752 2235677888999998 444 4444 56666666555543 565555
Q ss_pred --EeecCCC--C---CC---cccHHHHHHHHHHHHHHHhcCCCC
Q 025927 194 --MSVNPGF--G---GQ---SFIESQVKKISDLRRMCLEKGVNP 227 (246)
Q Consensus 194 --MsV~PGf--g---GQ---~F~~~~l~KI~~lr~l~~~~~~~~ 227 (246)
+++.||- . ++ +-.++..+-.+.+++.+.+.|+..
T Consensus 356 ~~L~i~~gT~l~~~~~~~~~~~~~~~~~m~~~a~~~l~~~Gy~~ 399 (488)
T PRK08207 356 HTLAIKRASRLTENKEKYKVADREEIEKMMEEAEEWAKELGYVP 399 (488)
T ss_pred EeceEcCCChHHHhcCcCCCcCHHHHHHHHHHHHHHHHHcCCHh
Confidence 6666762 1 11 112233334455667777777653
No 228
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=86.52 E-value=20 Score=36.46 Aligned_cols=143 Identities=17% Similarity=0.231 Sum_probs=83.3
Q ss_pred hhHHHHHHHHHHcCCCEEEeeeccC-------cccCCCCCCHHHHhhccc-CCCCCeeEEEeccC-------ccc----c
Q 025927 70 AKLGEQVKAVELAGCDWIHVDVMDG-------RFVPNITIGPLVVDALRP-VTDLPLDVHLMIVE-------PEQ----R 130 (246)
Q Consensus 70 ~~l~~~i~~l~~~g~d~lHiDIMDG-------~FVpN~tfgp~~I~~ir~-~t~~plDvHLMV~~-------P~~----~ 130 (246)
...-+-++.|.++|++++ ++.-| .|+..- ..+.++.+++ ..+.++-.++=..| |.+ +
T Consensus 21 ~dkl~ia~~L~~~Gv~~I--E~~GGatfd~~~~f~~e~--~~e~l~~l~~~~~~~~l~~L~Rg~N~~G~~~ypddvv~~~ 96 (582)
T TIGR01108 21 EDMLPIAEKLDDVGYWSL--EVWGGATFDACIRFLNED--PWERLRELKKALPNTPLQMLLRGQNLLGYRHYADDVVERF 96 (582)
T ss_pred HHHHHHHHHHHHcCCCEE--EecCCcccccccccCCCC--HHHHHHHHHHhCCCCEEEEEEccccccccccCchhhHHHH
Confidence 344455677788888855 44322 333322 2456777776 44556555543333 443 4
Q ss_pred hHHHHhcCCCEEEEccCCcccccHHHHHHHHHHcCCcEEEEEc----CCCChHHHHHhhhh-----cceEEEEeecCCCC
Q 025927 131 VPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLN----PATSLSAIECVLDV-----VDLVLIMSVNPGFG 201 (246)
Q Consensus 131 i~~~~~agad~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAln----P~Tpve~l~~~l~~-----vD~VLvMsV~PGfg 201 (246)
++..+++|+|.+.+-.-.....++...++.+|+.|+.+-.++. |-.+++.+.+++.. +|.|-+ ..-.
T Consensus 97 v~~a~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~~Gad~I~i----~Dt~ 172 (582)
T TIGR01108 97 VKKAVENGMDVFRIFDALNDPRNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEELLEMGVDSICI----KDMA 172 (582)
T ss_pred HHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEE----CCCC
Confidence 5566778999766654322235678889999999998876643 43455666665543 454333 2234
Q ss_pred CCcccHHHHHHHHHHHHHH
Q 025927 202 GQSFIESQVKKISDLRRMC 220 (246)
Q Consensus 202 GQ~F~~~~l~KI~~lr~l~ 220 (246)
|-..=..+.+-++.+|+.+
T Consensus 173 G~~~P~~v~~lv~~lk~~~ 191 (582)
T TIGR01108 173 GILTPKAAYELVSALKKRF 191 (582)
T ss_pred CCcCHHHHHHHHHHHHHhC
Confidence 4444455666677776654
No 229
>PRK12677 xylose isomerase; Provisional
Probab=86.52 E-value=9.6 Score=36.66 Aligned_cols=45 Identities=20% Similarity=0.256 Sum_probs=34.0
Q ss_pred CcccchHHHHhcCCCEEEEccCCcc----c-----ccHHHHHHHHHHcCCcEEE
Q 025927 126 EPEQRVPDFIKAGADIVSVHCEQSS----T-----IHLHRTLNQIKDLGAKAGV 170 (246)
Q Consensus 126 ~P~~~i~~~~~agad~It~H~E~~~----~-----~~~~~~i~~Ik~~G~k~Gl 170 (246)
.|+..++.+.++|.+.|.+|.+... . ..+.++.+.+++.|+++..
T Consensus 32 ~~~E~v~~~a~~Gf~gVElh~~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~v~~ 85 (384)
T PRK12677 32 DPVEAVHKLAELGAYGVTFHDDDLVPFGATDAERDRIIKRFKKALDETGLVVPM 85 (384)
T ss_pred CHHHHHHHHHHhCCCEEEecccccCCCCCChhhhHHHHHHHHHHHHHcCCeeEE
Confidence 5677889999999999999965210 0 1266788889999999763
No 230
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=86.50 E-value=16 Score=33.30 Aligned_cols=144 Identities=19% Similarity=0.188 Sum_probs=81.1
Q ss_pred hHHHHHHHHHHcCCCEEEeeeccC-cccCCC---CCC-HHHHhhccc-CCCCCeeEEEecc-------Cc----ccchHH
Q 025927 71 KLGEQVKAVELAGCDWIHVDVMDG-RFVPNI---TIG-PLVVDALRP-VTDLPLDVHLMIV-------EP----EQRVPD 133 (246)
Q Consensus 71 ~l~~~i~~l~~~g~d~lHiDIMDG-~FVpN~---tfg-p~~I~~ir~-~t~~plDvHLMV~-------~P----~~~i~~ 133 (246)
...+.++.|.++|++++=+ --| +|.-++ +-. .+.++.+++ ..+.++-++.... .| +.+++.
T Consensus 22 ~~~~ia~~L~~~Gv~~iE~--G~~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~~~~di~~ 99 (275)
T cd07937 22 DMLPIAEALDEAGFFSLEV--WGGATFDVCMRFLNEDPWERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDVVELFVEK 99 (275)
T ss_pred HHHHHHHHHHHcCCCEEEc--cCCcchhhhccccCCCHHHHHHHHHHhCCCCceehhcccccccCccCCCcHHHHHHHHH
Confidence 3344577888889776532 212 232111 222 244555654 2445555555432 22 335666
Q ss_pred HHhcCCCEEEEccCCcccccHHHHHHHHHHcCCcEEEEEc----CCCChHHHHHhhhh-----cceEEEEeecCCCCCCc
Q 025927 134 FIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLN----PATSLSAIECVLDV-----VDLVLIMSVNPGFGGQS 204 (246)
Q Consensus 134 ~~~agad~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAln----P~Tpve~l~~~l~~-----vD~VLvMsV~PGfgGQ~ 204 (246)
..++|++.|.+-.-....+.....++++|+.|.++...+. +.++.+.+.+++.. +|.|-+- .-.|..
T Consensus 100 ~~~~g~~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~----DT~G~~ 175 (275)
T cd07937 100 AAKNGIDIFRIFDALNDVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADSICIK----DMAGLL 175 (275)
T ss_pred HHHcCCCEEEEeecCChHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEc----CCCCCC
Confidence 6778999755532211134567888999999998876664 56777777776544 5554432 334555
Q ss_pred ccHHHHHHHHHHHHHH
Q 025927 205 FIESQVKKISDLRRMC 220 (246)
Q Consensus 205 F~~~~l~KI~~lr~l~ 220 (246)
.-..+.+.++.+|+..
T Consensus 176 ~P~~v~~lv~~l~~~~ 191 (275)
T cd07937 176 TPYAAYELVKALKKEV 191 (275)
T ss_pred CHHHHHHHHHHHHHhC
Confidence 5556666666666654
No 231
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=86.29 E-value=4.6 Score=34.79 Aligned_cols=85 Identities=20% Similarity=0.203 Sum_probs=56.5
Q ss_pred CCCCHHHHhhcccCC-CCCeeEEEeccCcccchHHHHhcCCCEEEEccCCcccccHHHHHHHHHHcCCcEEEEEcCCCCh
Q 025927 100 ITIGPLVVDALRPVT-DLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSL 178 (246)
Q Consensus 100 ~tfgp~~I~~ir~~t-~~plDvHLMV~~P~~~i~~~~~agad~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpv 178 (246)
.+|.++.++.+|+.. +++. ..+.-..|..+.+.+.+.+++.+.++++.. . ..+++.+|++|+++.++ -.+ ..
T Consensus 138 ~Sf~~~~l~~~~~~~p~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~v~~~~~~g~~v~~w-Tvn-~~ 210 (229)
T cd08562 138 SSFSLEALRAARRAAPELPL-GLLFDTLPADWLELLAALGAVSIHLNYRGL---T-EEQVKALKDAGYKLLVY-TVN-DP 210 (229)
T ss_pred ECCCHHHHHHHHHhCCCCcE-EEEecCCCcCHHHHHHHcCCeEEecChhhC---C-HHHHHHHHHCCCEEEEE-eCC-CH
Confidence 478999999998853 3433 445445666777777777877776666532 2 36899999999999876 222 24
Q ss_pred HHHHHhhh-hcceE
Q 025927 179 SAIECVLD-VVDLV 191 (246)
Q Consensus 179 e~l~~~l~-~vD~V 191 (246)
+.++.++. -||.|
T Consensus 211 ~~~~~~~~~gVdgi 224 (229)
T cd08562 211 ARAAELLEWGVDAI 224 (229)
T ss_pred HHHHHHHHCCCCEE
Confidence 55555554 36654
No 232
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=86.25 E-value=3.2 Score=42.19 Aligned_cols=104 Identities=19% Similarity=0.253 Sum_probs=72.8
Q ss_pred ChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchH--HHHhcCCCEEEEc
Q 025927 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVP--DFIKAGADIVSVH 145 (246)
Q Consensus 68 D~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~--~~~~agad~It~H 145 (246)
|+..+.+.++++.++|+|+|-+==|-|...|.-. .+.+++||+..++|+.+|.=-..=..... .-+++||++|-.=
T Consensus 147 ~~~~~~~~~~~~~~~Gad~I~i~Dt~G~~~P~~v--~~lv~~lk~~~~~pi~~H~Hnt~Gla~An~laAveaGa~~vd~a 224 (582)
T TIGR01108 147 TLETYLDLAEELLEMGVDSICIKDMAGILTPKAA--YELVSALKKRFGLPVHLHSHATTGMAEMALLKAIEAGADGIDTA 224 (582)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHH--HHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCEEEec
Confidence 5678888899999999999988777787777543 34677888876788888875544332222 2367899987655
Q ss_pred cCCc----ccccHHHHHHHHHHcCCcEEEEEc
Q 025927 146 CEQS----STIHLHRTLNQIKDLGAKAGVVLN 173 (246)
Q Consensus 146 ~E~~----~~~~~~~~i~~Ik~~G~k~GlAln 173 (246)
+-.. +....+.++..++..|...|+-+.
T Consensus 225 i~GlG~~tGn~~le~vv~~L~~~g~~tgid~~ 256 (582)
T TIGR01108 225 ISSMSGGTSHPPTETMVAALRGTGYDTGLDIE 256 (582)
T ss_pred cccccccccChhHHHHHHHHHhcCCCcccCHH
Confidence 4322 234567788888888887776443
No 233
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=86.25 E-value=23 Score=31.31 Aligned_cols=147 Identities=20% Similarity=0.242 Sum_probs=79.0
Q ss_pred HHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccC-c---------ccchHHHHhcCCCEEEE
Q 025927 75 QVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVE-P---------EQRVPDFIKAGADIVSV 144 (246)
Q Consensus 75 ~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~-P---------~~~i~~~~~agad~It~ 144 (246)
..+..+..|+.-+-.. |++.|+++|+.+++|+-= |.=.+ | .+-++.++++|+|+|.+
T Consensus 4 mA~Aa~~gGA~giR~~------------~~~dI~aik~~v~lPIIG-i~K~~y~~~~V~ITPT~~ev~~l~~aGadIIAl 70 (192)
T PF04131_consen 4 MAKAAEEGGAVGIRAN------------GVEDIRAIKKAVDLPIIG-IIKRDYPDSDVYITPTLKEVDALAEAGADIIAL 70 (192)
T ss_dssp HHHHHHHCT-SEEEEE------------SHHHHHHHHTTB-S-EEE-E-B-SBTTSS--BS-SHHHHHHHHHCT-SEEEE
T ss_pred HHHHHHHCCceEEEcC------------CHHHHHHHHHhcCCCEEE-EEeccCCCCCeEECCCHHHHHHHHHcCCCEEEE
Confidence 3445566666666654 788999999988887533 32111 1 24578899999999998
Q ss_pred ccCCc-ccccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhh-hhcceEEEEeecCCCCCCcccHHHHHHHHHHHHHHHh
Q 025927 145 HCEQS-STIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVL-DVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLE 222 (246)
Q Consensus 145 H~E~~-~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l-~~vD~VLvMsV~PGfgGQ~F~~~~l~KI~~lr~l~~~ 222 (246)
-.-.- -...+.+++++||+.+ .-+.-.-.| +|+-..-. --+|+| =|.--||.+..-. ...-++-++++...
T Consensus 71 DaT~R~Rp~~l~~li~~i~~~~--~l~MADist-~ee~~~A~~~G~D~I--~TTLsGYT~~t~~--~~pD~~lv~~l~~~ 143 (192)
T PF04131_consen 71 DATDRPRPETLEELIREIKEKY--QLVMADIST-LEEAINAAELGFDII--GTTLSGYTPYTKG--DGPDFELVRELVQA 143 (192)
T ss_dssp E-SSSS-SS-HHHHHHHHHHCT--SEEEEE-SS-HHHHHHHHHTT-SEE--E-TTTTSSTTSTT--SSHHHHHHHHHHHT
T ss_pred ecCCCCCCcCHHHHHHHHHHhC--cEEeeecCC-HHHHHHHHHcCCCEE--EcccccCCCCCCC--CCCCHHHHHHHHhC
Confidence 65310 0135789999999988 333333333 44333322 236754 4555687655433 22223444444443
Q ss_pred cCCCCeEEEeCCCC-hhhhhhcc
Q 025927 223 KGVNPWIEVDGGVG-PKNAYKVP 244 (246)
Q Consensus 223 ~~~~~~I~VDGGI~-~e~i~~l~ 244 (246)
...+-..|+++ ++.++++.
T Consensus 144 ---~~pvIaEGri~tpe~a~~al 163 (192)
T PF04131_consen 144 ---DVPVIAEGRIHTPEQAAKAL 163 (192)
T ss_dssp ---TSEEEEESS--SHHHHHHHH
T ss_pred ---CCcEeecCCCCCHHHHHHHH
Confidence 34588899994 45555443
No 234
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=86.25 E-value=20 Score=34.48 Aligned_cols=134 Identities=10% Similarity=0.113 Sum_probs=76.1
Q ss_pred cccChhhHHHHHHHHHHcCCCEEEe-eeccCcccCC---CCCCHHHHhhcccCCCCCeeEEEeccCcc----cchHHHHh
Q 025927 65 LSANFAKLGEQVKAVELAGCDWIHV-DVMDGRFVPN---ITIGPLVVDALRPVTDLPLDVHLMIVEPE----QRVPDFIK 136 (246)
Q Consensus 65 l~aD~~~l~~~i~~l~~~g~d~lHi-DIMDG~FVpN---~tfgp~~I~~ir~~t~~plDvHLMV~~P~----~~i~~~~~ 136 (246)
-+-++.++-+|++.+.+.|.+.+.+ |.-.+.|--+ -..-.+.++.|++..+++. +.+...+|. +.++.+.+
T Consensus 162 r~r~~e~Vv~Ei~~l~~~g~k~i~~~~~d~~~~g~d~~~~~~l~~Ll~~i~~~~~i~~-~r~~~~~p~~~~~ell~~~~~ 240 (430)
T TIGR01125 162 RSRPIEEILKEAERLVDQGVKEIILIAQDTTAYGKDLYRESKLVDLLEELGKVGGIYW-IRMHYLYPDELTDDVIDLMAE 240 (430)
T ss_pred eecCHHHHHHHHHHHHHCCCcEEEEEeECCCccccCCCCcccHHHHHHHHHhcCCccE-EEEccCCcccCCHHHHHHHhh
Confidence 3556678889999998889888773 3323223111 1112456666665432322 334444554 45666777
Q ss_pred cC--CCEEEEccCCcc------------cccHHHHHHHHHHcC--CcE--EEEEc-CCCChHHHHHhhhh-----cceEE
Q 025927 137 AG--ADIVSVHCEQSS------------TIHLHRTLNQIKDLG--AKA--GVVLN-PATSLSAIECVLDV-----VDLVL 192 (246)
Q Consensus 137 ag--ad~It~H~E~~~------------~~~~~~~i~~Ik~~G--~k~--GlAln-P~Tpve~l~~~l~~-----vD~VL 192 (246)
+| +..+.+-+|+.+ .++..+.++.+|+++ +.+ .+.+. |+...+.++..++. +|.+.
T Consensus 241 ~~~~~~~l~iglES~s~~vLk~m~k~~~~~~~~~~i~~l~~~~~~i~i~~~~I~G~PgET~e~~~~t~~fl~~~~~~~~~ 320 (430)
T TIGR01125 241 GPKVLPYLDIPLQHASDRILKLMRRPGSGEQQLDFIERLREKCPDAVLRTTFIVGFPGETEEDFQELLDFVEEGQFDRLG 320 (430)
T ss_pred CCcccCceEeCCCCCCHHHHhhCCCCCCHHHHHHHHHHHHHhCCCCeEeEEEEEECCCCCHHHHHHHHHHHHhcCCCEEe
Confidence 75 667777788642 123557888888874 333 23333 66666666655443 55555
Q ss_pred E--EeecCC
Q 025927 193 I--MSVNPG 199 (246)
Q Consensus 193 v--MsV~PG 199 (246)
+ .+-.||
T Consensus 321 ~~~~sp~pG 329 (430)
T TIGR01125 321 AFTYSPEEG 329 (430)
T ss_pred eeeccCCCC
Confidence 5 444455
No 235
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=86.17 E-value=19 Score=34.14 Aligned_cols=122 Identities=11% Similarity=0.131 Sum_probs=78.9
Q ss_pred HHhhcccC-CCCCeeEEEecc--Cc--ccchHHHHhcCCCEEEEccCCcccccHHHHHHHHHHcCCcEEEEEcCCCChHH
Q 025927 106 VVDALRPV-TDLPLDVHLMIV--EP--EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSA 180 (246)
Q Consensus 106 ~I~~ir~~-t~~plDvHLMV~--~P--~~~i~~~~~agad~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~ 180 (246)
.|+.+|+. |+.|+=|-||.. +| ..+++...+.++..|+++.- .+.. ++.+|+.|+++-... ++++.
T Consensus 45 ~i~~~~~l~tdkPfGVnl~~~~~~~~~~~~l~vi~e~~v~~V~~~~G-----~P~~-~~~lk~~Gi~v~~~v---~s~~~ 115 (320)
T cd04743 45 LLEETAELLGDKPWGVGILGFVDTELRAAQLAVVRAIKPTFALIAGG-----RPDQ-ARALEAIGISTYLHV---PSPGL 115 (320)
T ss_pred HHHHHHHhccCCCeEEEEeccCCCcchHHHHHHHHhcCCcEEEEcCC-----ChHH-HHHHHHCCCEEEEEe---CCHHH
Confidence 34455664 788988888654 33 25677778899999999864 2333 588899998875433 56766
Q ss_pred HHHhhhh-cceEEEEeecCCC-CCC--c--ccHHHHHHHHHHHHHHHhcCCCCeEEEeCCCChh
Q 025927 181 IECVLDV-VDLVLIMSVNPGF-GGQ--S--FIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPK 238 (246)
Q Consensus 181 l~~~l~~-vD~VLvMsV~PGf-gGQ--~--F~~~~l~KI~~lr~l~~~~~~~~~I~VDGGI~~e 238 (246)
.+...+. +|.|.+-..|-|- .|. . ..|.+++.+.. ...+....++-+..=|||.-.
T Consensus 116 A~~a~~~GaD~vVaqG~EAGGH~G~~~t~~L~~~v~~~l~~--~~~~~~~~~iPViAAGGI~dg 177 (320)
T cd04743 116 LKQFLENGARKFIFEGRECGGHVGPRSSFVLWESAIDALLA--ANGPDKAGKIHLLFAGGIHDE 177 (320)
T ss_pred HHHHHHcCCCEEEEecCcCcCCCCCCCchhhHHHHHHHHHH--hhcccccCCccEEEEcCCCCH
Confidence 7777665 9999999999854 342 1 34444444321 111222234667889999654
No 236
>COG0620 MetE Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism]
Probab=86.17 E-value=13 Score=35.19 Aligned_cols=161 Identities=22% Similarity=0.260 Sum_probs=92.6
Q ss_pred CcEEeeeecccChh-hHHHHHHHHHHcCCCEEEeeeccCc-ccCCCCCCHHHHh----hcccC-----CCCCeeEEEecc
Q 025927 57 DIIVSPSILSANFA-KLGEQVKAVELAGCDWIHVDVMDGR-FVPNITIGPLVVD----ALRPV-----TDLPLDVHLMIV 125 (246)
Q Consensus 57 ~~~IsPSIl~aD~~-~l~~~i~~l~~~g~d~lHiDIMDG~-FVpN~tfgp~~I~----~ir~~-----t~~plDvHLMV~ 125 (246)
+...++.-++.|++ .+.++++.|+++|+..+.+|=---. ..|... +++.++ +++.. .+..+..|+-=.
T Consensus 144 ~~~~~~~el~~~iA~al~~ev~~l~~agi~~iQiDEpal~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~d~~i~~HiCy~ 222 (330)
T COG0620 144 RYYISREELAKDIALALRDEVKDLEDAGIKIIQIDEPALREGLPLRR-DDDYLEWAVEAINLAAAGVGADTQIHLHICYS 222 (330)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEeechhhhhcCCcccc-chHHHHHHHHHHHHHHhcCCCCcEEEEEEECC
Confidence 34566777777776 4668999999999999999963222 223333 233333 33332 245666674444
Q ss_pred CcccchHHHHhcCCCEEEEccCCcccccHHHHHHHHH-HcCCcEEEEEcCCCChH---HHHHhh----hhcceEEEEeec
Q 025927 126 EPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIK-DLGAKAGVVLNPATSLS---AIECVL----DVVDLVLIMSVN 197 (246)
Q Consensus 126 ~P~~~i~~~~~agad~It~H~E~~~~~~~~~~i~~Ik-~~G~k~GlAlnP~Tpve---~l~~~l----~~vD~VLvMsV~ 197 (246)
+.....+.+....+|.+++..-. +.....+.+..++ +.++-.|+.=--.+-++ .+...+ ..++ ....-|+
T Consensus 223 e~~~~~~~i~~ld~dv~~~e~~~-s~~~~~~~~~~~~~~~~Ig~Gv~d~~~~~ve~~eei~~~i~k~~~~~~-~e~~~vn 300 (330)
T COG0620 223 EFNDIPDAIEALDADVIDIETSR-SRMELLEVLEEVKYDKEIGLGVVDIHSPKVESVEEIAARIRKALERVP-PERLYVN 300 (330)
T ss_pred cccchhHHHhhcCCcEEeeeccc-cccchhHHHHhccCCCeeecceEecCCCCcCCHHHHHHHHHHHHHhCC-hheEEEc
Confidence 55556667777788999987653 1222344454443 22333444333333333 333333 3344 3466778
Q ss_pred C--CCCCCcccHHHHHHHHHHHHHHH
Q 025927 198 P--GFGGQSFIESQVKKISDLRRMCL 221 (246)
Q Consensus 198 P--GfgGQ~F~~~~l~KI~~lr~l~~ 221 (246)
| |+..-+ .+.+.+|++.+.+...
T Consensus 301 PDCGl~~~~-~~~a~~kL~nmv~a~~ 325 (330)
T COG0620 301 PDCGLKTLP-REIAEAKLENMVKAAK 325 (330)
T ss_pred CCCCcccCc-HHHHHHHHHHHHHHHH
Confidence 8 666666 7788888887766543
No 237
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=86.13 E-value=10 Score=36.57 Aligned_cols=134 Identities=16% Similarity=0.195 Sum_probs=76.4
Q ss_pred HHHHHHHHcCCCEEEee-eccCcccCCCCCCHHHHhhcccCCCCCeeEEEec-cCcccchHHHHhcCCCEEEEccCCc--
Q 025927 74 EQVKAVELAGCDWIHVD-VMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMI-VEPEQRVPDFIKAGADIVSVHCEQS-- 149 (246)
Q Consensus 74 ~~i~~l~~~g~d~lHiD-IMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV-~~P~~~i~~~~~agad~It~H~E~~-- 149 (246)
..++.+.++|+|.+|+- -.|.. .+ .+.++.++++ +.++-+-++. .++...+....+.|+|+|.+|+=..
T Consensus 72 ~~v~~a~~aGAdgV~v~g~~~~~-----~~-~~~i~~a~~~-G~~~~~g~~s~~t~~e~~~~a~~~GaD~I~~~pg~~~~ 144 (430)
T PRK07028 72 IEVEMAAKAGADIVCILGLADDS-----TI-EDAVRAARKY-GVRLMADLINVPDPVKRAVELEELGVDYINVHVGIDQQ 144 (430)
T ss_pred HHHHHHHHcCCCEEEEecCCChH-----HH-HHHHHHHHHc-CCEEEEEecCCCCHHHHHHHHHhcCCCEEEEEeccchh
Confidence 47888999999999974 22210 11 3466666664 5544433344 2444556677788999999986210
Q ss_pred -ccccHHHHHHHHHHc-CCcEEEEEcCCCChHHHHHhhhh-cceEEEEeecCCCCCCcccHHHHHHHHHHHHHHHh
Q 025927 150 -STIHLHRTLNQIKDL-GAKAGVVLNPATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLE 222 (246)
Q Consensus 150 -~~~~~~~~i~~Ik~~-G~k~GlAlnP~Tpve~l~~~l~~-vD~VLvMsV~PGfgGQ~F~~~~l~KI~~lr~l~~~ 222 (246)
........++.+++. ++. +..-.+-..+.+..++.. +|.|.+.+---+ .+ +.-+.++.+++.+.+
T Consensus 145 ~~~~~~~~~l~~l~~~~~iP--I~a~GGI~~~n~~~~l~aGAdgv~vGsaI~~---~~---d~~~~~~~l~~~i~~ 212 (430)
T PRK07028 145 MLGKDPLELLKEVSEEVSIP--IAVAGGLDAETAAKAVAAGADIVIVGGNIIK---SA---DVTEAARKIREAIDS 212 (430)
T ss_pred hcCCChHHHHHHHHhhCCCc--EEEECCCCHHHHHHHHHcCCCEEEEChHHcC---CC---CHHHHHHHHHHHHhc
Confidence 012233567777653 333 333445566778777765 888777654321 11 233444555665543
No 238
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=85.98 E-value=2.8 Score=37.44 Aligned_cols=68 Identities=31% Similarity=0.304 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEEEc
Q 025927 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVH 145 (246)
Q Consensus 71 ~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It~H 145 (246)
+..+-.+.++++|+|+||+|-|... .....+.|++++ +++|+-.===+.+++...+.+ +.|+|.|.+=
T Consensus 153 ~~~~la~~l~~aG~d~ihv~~~~~g----~~ad~~~I~~i~--~~ipVIgnGgI~s~eda~~~l-~~GaD~VmiG 220 (233)
T cd02911 153 DDEELARLIEKAGADIIHVDAMDPG----NHADLKKIRDIS--TELFIIGNNSVTTIESAKEMF-SYGADMVSVA 220 (233)
T ss_pred CHHHHHHHHHHhCCCEEEECcCCCC----CCCcHHHHHHhc--CCCEEEEECCcCCHHHHHHHH-HcCCCEEEEc
Confidence 4455567889999999999866532 233456677665 456654433455666655444 5789988773
No 239
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=85.75 E-value=5.1 Score=37.68 Aligned_cols=108 Identities=18% Similarity=0.269 Sum_probs=68.6
Q ss_pred ccChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCC--HHHHhhcccCCCCC-eeEEEecc------------Ccccc
Q 025927 66 SANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIG--PLVVDALRPVTDLP-LDVHLMIV------------EPEQR 130 (246)
Q Consensus 66 ~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfg--p~~I~~ir~~t~~p-lDvHLMV~------------~P~~~ 130 (246)
..+...+.++++...+.|+..+++- +|.. |+..+. -++++.|++. .| +.+|-|+. ..+..
T Consensus 78 ~l~~eeI~~~a~~~~~~G~~~v~l~--~G~~-p~~~~~~~~e~i~~Ik~~--~p~i~i~~~~~~ei~~~~~~~g~~~~e~ 152 (351)
T TIGR03700 78 AMSLEEIVARVKEAYAPGATEVHIV--GGLH-PNLPFEWYLDMIRTLKEA--YPDLHVKAFTAVEIHHFSKISGLPTEEV 152 (351)
T ss_pred CCCHHHHHHHHHHHHHCCCcEEEEe--cCCC-CCCCHHHHHHHHHHHHHH--CCCceEEeCCHHHHHHHHHHcCCCHHHH
Confidence 3577888899999999999988874 6755 444321 2456666653 33 55555431 23455
Q ss_pred hHHHHhcCCCEEE-EccCCcc-------------cccHHHHHHHHHHcCCcE--EEEEcCCCCh
Q 025927 131 VPDFIKAGADIVS-VHCEQSS-------------TIHLHRTLNQIKDLGAKA--GVVLNPATSL 178 (246)
Q Consensus 131 i~~~~~agad~It-~H~E~~~-------------~~~~~~~i~~Ik~~G~k~--GlAlnP~Tpv 178 (246)
++.|.++|.+.+. .=+|... .+...++++.+|++|+++ |+.+..+-..
T Consensus 153 l~~LkeAGld~~~~~g~E~~~~~v~~~i~~~~~~~~~~l~~i~~a~~~Gi~~~sg~i~GlgEt~ 216 (351)
T TIGR03700 153 LDELKEAGLDSMPGGGAEIFAEEVRQQICPEKISAERWLEIHRTAHELGLKTNATMLYGHIETP 216 (351)
T ss_pred HHHHHHcCCCcCCCCcccccCHHHHhhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEeeCCCCH
Confidence 7889999999776 2244320 122346889999999875 6666665333
No 240
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=85.55 E-value=6.6 Score=36.70 Aligned_cols=108 Identities=20% Similarity=0.189 Sum_probs=62.3
Q ss_pred HHHHHHHHcCCCEEEeeeccCcccCC---------CCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEEE
Q 025927 74 EQVKAVELAGCDWIHVDVMDGRFVPN---------ITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSV 144 (246)
Q Consensus 74 ~~i~~l~~~g~d~lHiDIMDG~FVpN---------~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It~ 144 (246)
+|.+-.|++|+= -||==.-||. -.=+|+.|++|++..++|+-...=..+ ..-.+.+.++|+|+|-
T Consensus 21 eqa~iae~aga~----avm~le~~p~d~r~~ggv~R~~~p~~I~~I~~~V~iPVig~~kigh-~~Ea~~L~~~GvDiID- 94 (287)
T TIGR00343 21 EQAKIAEEAGAV----AVMALERVPADIRASGGVARMSDPKMIKEIMDAVSIPVMAKVRIGH-FVEAQILEALGVDYID- 94 (287)
T ss_pred HHHHHHHHcCce----EEEeeccCchhhHhcCCeeecCCHHHHHHHHHhCCCCEEEEeeccH-HHHHHHHHHcCCCEEE-
Confidence 566777788753 3444444442 133899999999988999776554444 3445677889999993
Q ss_pred ccCCcccccHHHHHHHHHHcCCcEEEEEcCCCCh-HHHHHhhhhcceE
Q 025927 145 HCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSL-SAIECVLDVVDLV 191 (246)
Q Consensus 145 H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpv-e~l~~~l~~vD~V 191 (246)
|+.-......++..+|.. .++=+ .+-...+ |.+.-.-.-+|+|
T Consensus 95 --eTe~lrPade~~~~~K~~-f~vpf-mad~~~l~EAlrai~~GadmI 138 (287)
T TIGR00343 95 --ESEVLTPADWTFHIDKKK-FKVPF-VCGARDLGEALRRINEGAAMI 138 (287)
T ss_pred --ccCCCCcHHHHHHHHHHH-cCCCE-EccCCCHHHHHHHHHCCCCEE
Confidence 532112245666666653 23222 2333444 4444433336654
No 241
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=85.48 E-value=25 Score=31.42 Aligned_cols=128 Identities=20% Similarity=0.281 Sum_probs=76.6
Q ss_pred CcEEeeeecccChhhHHHHHHHHHHcCCCEEEeeeccCcccC---CCCCC------H----HHHhhcccCCCCCeeEEEe
Q 025927 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVP---NITIG------P----LVVDALRPVTDLPLDVHLM 123 (246)
Q Consensus 57 ~~~IsPSIl~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVp---N~tfg------p----~~I~~ir~~t~~plDvHLM 123 (246)
...+..++...|+..+.+-.+.+++. .+. +|+.=|==.+ .-+.| | ++++++|+ +++|+.+=+=
T Consensus 72 ~~p~~vqi~g~~~~~~~~aa~~~~~~-~~~--ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~-~~~pVsvKir 147 (233)
T cd02911 72 NVLVGVNVRSSSLEPLLNAAALVAKN-AAI--LEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKE-TGVPVSVKIR 147 (233)
T ss_pred CCeEEEEecCCCHHHHHHHHHHHhhc-CCE--EEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHh-cCCCEEEEEc
Confidence 45789999999999999999988774 464 4443231111 11222 3 44666676 5788877664
Q ss_pred cc---CcccchHHHHhcCCCEEEEccCCccc---ccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhhh-cceEEE
Q 025927 124 IV---EPEQRVPDFIKAGADIVSVHCEQSST---IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV-VDLVLI 193 (246)
Q Consensus 124 V~---~P~~~i~~~~~agad~It~H~E~~~~---~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~~-vD~VLv 193 (246)
.. +...+.+.+.++|+|.|++ .+... .+ .+.+..++ .++ .=++-+-=++.+...+++.. +|.|.+
T Consensus 148 ~g~~~~~~~la~~l~~aG~d~ihv--~~~~~g~~ad-~~~I~~i~-~~i-pVIgnGgI~s~eda~~~l~~GaD~Vmi 219 (233)
T cd02911 148 AGVDVDDEELARLIEKAGADIIHV--DAMDPGNHAD-LKKIRDIS-TEL-FIIGNNSVTTIESAKEMFSYGADMVSV 219 (233)
T ss_pred CCcCcCHHHHHHHHHHhCCCEEEE--CcCCCCCCCc-HHHHHHhc-CCC-EEEEECCcCCHHHHHHHHHcCCCEEEE
Confidence 32 3455666778899997654 43211 12 24455544 222 22333333778888888765 887665
No 242
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=85.20 E-value=18 Score=33.19 Aligned_cols=156 Identities=22% Similarity=0.286 Sum_probs=95.5
Q ss_pred eecccChhhHHHHHHHHHHcCCCEEEee-eccCc-ccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCC
Q 025927 63 SILSANFAKLGEQVKAVELAGCDWIHVD-VMDGR-FVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGAD 140 (246)
Q Consensus 63 SIl~aD~~~l~~~i~~l~~~g~d~lHiD-IMDG~-FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad 140 (246)
+++.++-..|.+...++++.|...+=+- =||-. +||---| .+.++++++.+++.+.+|.=+.+ +.++++|.+.++|
T Consensus 35 ~Mi~vt~~~l~k~~~el~kkGy~g~llSGGm~srg~VPl~kf-~d~lK~lke~~~l~inaHvGfvd-E~~~eklk~~~vd 112 (275)
T COG1856 35 HMIKVTTKSLLKRCMELEKKGYEGCLLSGGMDSRGKVPLWKF-KDELKALKERTGLLINAHVGFVD-ESDLEKLKEELVD 112 (275)
T ss_pred HhcccchHHHHHHHHHHHhcCceeEEEeCCcCCCCCccHHHH-HHHHHHHHHhhCeEEEEEeeecc-HHHHHHHHHhcCc
Confidence 3444555677777778888886655432 23321 5554344 35788999999999999999999 9999999999999
Q ss_pred EEEEccCCc------------ccccHHHHHHHHHHcCCcE------EEEEcCCC-ChHHHHHhhh--hcceEEEEeecC-
Q 025927 141 IVSVHCEQS------------STIHLHRTLNQIKDLGAKA------GVVLNPAT-SLSAIECVLD--VVDLVLIMSVNP- 198 (246)
Q Consensus 141 ~It~H~E~~------------~~~~~~~~i~~Ik~~G~k~------GlAlnP~T-pve~l~~~l~--~vD~VLvMsV~P- 198 (246)
.++.-.=.- +.++..+.+..++++|+++ ||...-=+ ..+.+ .+|. ..|.+.+--+-|
T Consensus 113 vvsLDfvgDn~vIk~vy~l~ksv~dyl~~l~~L~e~~irvvpHitiGL~~gki~~e~kaI-diL~~~~~DalVl~vliPt 191 (275)
T COG1856 113 VVSLDFVGDNDVIKRVYKLPKSVEDYLRSLLLLKENGIRVVPHITIGLDFGKIHGEFKAI-DILVNYEPDALVLVVLIPT 191 (275)
T ss_pred EEEEeecCChHHHHHHHcCCccHHHHHHHHHHHHHcCceeceeEEEEeccCcccchHHHH-HHHhcCCCCeEEEEEEecC
Confidence 998765210 1234556788889999774 44333222 22333 2332 467655555555
Q ss_pred -CCC-CCcc---cHHHHHHHHHHHHHHH
Q 025927 199 -GFG-GQSF---IESQVKKISDLRRMCL 221 (246)
Q Consensus 199 -Gfg-GQ~F---~~~~l~KI~~lr~l~~ 221 (246)
|-- |..+ .+++.+-++.+|+.++
T Consensus 192 pGtkm~~~~pp~~eE~i~v~~~AR~~f~ 219 (275)
T COG1856 192 PGTKMGNSPPPPVEEAIKVVKYARKKFP 219 (275)
T ss_pred CchhccCCCCcCHHHHHHHHHHHHHhCC
Confidence 421 1112 3344555555565554
No 243
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=84.96 E-value=13 Score=35.40 Aligned_cols=153 Identities=14% Similarity=0.209 Sum_probs=86.2
Q ss_pred hhhHHHHHHHHHHc----CCCEEEeeeccCcccCCCCCCHHHHhh----cccCCCCCeeEEE-eccCcc----cchHHHH
Q 025927 69 FAKLGEQVKAVELA----GCDWIHVDVMDGRFVPNITIGPLVVDA----LRPVTDLPLDVHL-MIVEPE----QRVPDFI 135 (246)
Q Consensus 69 ~~~l~~~i~~l~~~----g~d~lHiDIMDG~FVpN~tfgp~~I~~----ir~~t~~plDvHL-MV~~P~----~~i~~~~ 135 (246)
...|.+|++...+. .++.+|+ -+|+ | ..+.++.++. |++..++.-++++ +-.+|. ..++.+.
T Consensus 37 ~~aL~~Ei~~~~~~~~~~~i~tiy~--GGGT--P-s~l~~~~L~~ll~~i~~~f~~~~~~eit~E~~P~~i~~e~L~~l~ 111 (380)
T PRK09057 37 AAAFLRELATEAARTGPRTLTSIFF--GGGT--P-SLMQPETVAALLDAIARLWPVADDIEITLEANPTSVEAGRFRGYR 111 (380)
T ss_pred HHHHHHHHHHHHHHcCCCCcCeEEe--CCCc--c-ccCCHHHHHHHHHHHHHhCCCCCCccEEEEECcCcCCHHHHHHHH
Confidence 34566676654322 3445543 3333 2 2344444444 3443222222232 223675 5678889
Q ss_pred hcCCCEEEEccCCcc------------cccHHHHHHHHHHcCCcEEEEEc---CCCChHHHHHhhh-----hcceEEE--
Q 025927 136 KAGADIVSVHCEQSS------------TIHLHRTLNQIKDLGAKAGVVLN---PATSLSAIECVLD-----VVDLVLI-- 193 (246)
Q Consensus 136 ~agad~It~H~E~~~------------~~~~~~~i~~Ik~~G~k~GlAln---P~Tpve~l~~~l~-----~vD~VLv-- 193 (246)
++|+++|++=+|+.. .++..+.++.+|+.+..+++-+- |+...+.+..-+. .+|.|-+
T Consensus 112 ~~GvnrislGvQS~~d~vL~~l~R~~~~~~~~~ai~~~~~~~~~v~~dli~GlPgqt~~~~~~~l~~~~~l~p~~is~y~ 191 (380)
T PRK09057 112 AAGVNRVSLGVQALNDADLRFLGRLHSVAEALAAIDLAREIFPRVSFDLIYARPGQTLAAWRAELKEALSLAADHLSLYQ 191 (380)
T ss_pred HcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHhCccEEEEeecCCCCCCHHHHHHHHHHHHhcCCCeEEeec
Confidence 999999999998752 12355677888888888887555 4444433332222 3676666
Q ss_pred EeecCCC------CCCcc----cHHHHHHHHHHHHHHHhcCCC
Q 025927 194 MSVNPGF------GGQSF----IESQVKKISDLRRMCLEKGVN 226 (246)
Q Consensus 194 MsV~PGf------gGQ~F----~~~~l~KI~~lr~l~~~~~~~ 226 (246)
+++.||- ..++| .++..+-.+.+++++.+.|+.
T Consensus 192 L~~~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~G~~ 234 (380)
T PRK09057 192 LTIEEGTAFYGLHAAGKLILPDEDLAADLYELTQEITAAAGLP 234 (380)
T ss_pred ceecCCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCc
Confidence 5777871 11222 234446677778888888763
No 244
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=84.95 E-value=5.1 Score=38.39 Aligned_cols=116 Identities=19% Similarity=0.213 Sum_probs=77.0
Q ss_pred cceeccccCCCCCCceeccccceeeeeeccccccCCCCCcEEeeeecccChhhHHHHHHHHHHcCCCEEEeeeccCcccC
Q 025927 19 GFMLQKTNLNQPSSLSFTRRRIQTIVKASARVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVP 98 (246)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IsPSIl~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVp 98 (246)
++.--+.++..++.+++.. |++.+..|-.+..+-...+...++.+- ++...+.+..+.++++|++.+.+|.+=.
T Consensus 156 D~IKdDe~l~~~~~~p~~e-Rv~~v~~av~~a~~eTG~~~~y~~Nit-a~~~em~~ra~~a~~~Ga~~vMv~~~~~---- 229 (364)
T cd08210 156 DIIKDDHGLADQPFAPFEE-RVKACQEAVAEANAETGGRTLYAPNVT-GPPTQLLERARFAKEAGAGGVLIAPGLT---- 229 (364)
T ss_pred CeeecCccccCccCCCHHH-HHHHHHHHHHHHHhhcCCcceEEEecC-CCHHHHHHHHHHHHHcCCCEEEeecccc----
Confidence 4555555665555555433 344444455555544444567777776 5678999999999999999999987543
Q ss_pred CCCCCHHHHhhcccCCC-CCeeEE-----EeccCcccc-----hHH-HHhcCCCEEEE
Q 025927 99 NITIGPLVVDALRPVTD-LPLDVH-----LMIVEPEQR-----VPD-FIKAGADIVSV 144 (246)
Q Consensus 99 N~tfgp~~I~~ir~~t~-~plDvH-----LMV~~P~~~-----i~~-~~~agad~It~ 144 (246)
|...+..+++..+ +|+..| -++.+|..+ +.+ +..+|+|.+.+
T Consensus 230 ----G~~~~~~l~~~~~~l~i~aHra~~ga~~~~~~~is~~~~~~kl~RlaGad~~~~ 283 (364)
T cd08210 230 ----GLDTFRELAEDFDFLPILAHPAFAGAFVSSGDGISHALLFGTLFRLAGADAVIF 283 (364)
T ss_pred ----hHHHHHHHHhcCCCcEEEEccccccccccCCCcccHHHHHHHHHHHhCCCEEEe
Confidence 3447777877778 999999 666777641 222 23389998743
No 245
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=84.94 E-value=27 Score=32.83 Aligned_cols=134 Identities=23% Similarity=0.262 Sum_probs=91.8
Q ss_pred CcEEeeeecccChhhHHHHHHHHHHcCCCEEEeeeccCcc---cCCCCC------CHHH----HhhcccCC-CCCeeEEE
Q 025927 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRF---VPNITI------GPLV----VDALRPVT-DLPLDVHL 122 (246)
Q Consensus 57 ~~~IsPSIl~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~F---VpN~tf------gp~~----I~~ir~~t-~~plDvHL 122 (246)
+..++.-|...|+..+.+..+.+++.|+| .+|+-=|== |-+-++ .|+. |+++++.. ++|+.|=+
T Consensus 66 e~p~~vQl~gsdp~~l~eaA~~~~~~g~~--~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKi 143 (323)
T COG0042 66 ERPVAVQLGGSDPELLAEAAKIAEELGAD--IIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKI 143 (323)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHhcCCC--EEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEEEE
Confidence 55589999999999999999999998866 445543321 112233 4444 44456666 48888766
Q ss_pred eccC--cc----cchHHHHhcCCCEEEEccCCcc-----cccHHHHHHHHHHcCCcEEEEEcCC-CChHHHHHhhhh--c
Q 025927 123 MIVE--PE----QRVPDFIKAGADIVSVHCEQSS-----TIHLHRTLNQIKDLGAKAGVVLNPA-TSLSAIECVLDV--V 188 (246)
Q Consensus 123 MV~~--P~----~~i~~~~~agad~It~H~E~~~-----~~~~~~~i~~Ik~~G~k~GlAlnP~-Tpve~l~~~l~~--v 188 (246)
=.-- ++ .+.+.+.++|++.+++|..+-. ..+ ...|..+|+.=-..=|..|-+ ++.++....|++ +
T Consensus 144 RlG~d~~~~~~~~ia~~~~~~g~~~ltVHgRtr~~~y~~~ad-~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~ 222 (323)
T COG0042 144 RLGWDDDDILALEIARILEDAGADALTVHGRTRAQGYLGPAD-WDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGA 222 (323)
T ss_pred ecccCcccccHHHHHHHHHhcCCCEEEEecccHHhcCCCccC-HHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCC
Confidence 5443 32 3555667789999999987521 123 356777776443366888888 799999999998 8
Q ss_pred ceEEE
Q 025927 189 DLVLI 193 (246)
Q Consensus 189 D~VLv 193 (246)
|-|++
T Consensus 223 DgVMi 227 (323)
T COG0042 223 DGVMI 227 (323)
T ss_pred CEEEE
Confidence 99887
No 246
>PRK01207 methionine synthase; Provisional
Probab=84.93 E-value=17 Score=34.73 Aligned_cols=70 Identities=19% Similarity=0.200 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHc------CCC-EEEeeeccCcccCCCCCCHH----HHhhcccC-CC--CCeeEEEecc-CcccchHHHH
Q 025927 71 KLGEQVKAVELA------GCD-WIHVDVMDGRFVPNITIGPL----VVDALRPV-TD--LPLDVHLMIV-EPEQRVPDFI 135 (246)
Q Consensus 71 ~l~~~i~~l~~~------g~d-~lHiDIMDG~FVpN~tfgp~----~I~~ir~~-t~--~plDvHLMV~-~P~~~i~~~~ 135 (246)
.|.+|++.|+++ |++ .|.+|==. ++=+++ .+++++.. .+ .++.+|+.-. +-...++.+.
T Consensus 153 al~~Ev~~L~~a~~~~~~G~~~~IQiDEPa------l~~~~~~l~~av~a~n~~~~gv~~~i~~H~C~g~~~~~i~~~i~ 226 (343)
T PRK01207 153 IINEELKDIKSAWDRKSPGRKLEIQIDEPA------TTTHPDEMDIVVDSINKSVYGIDNEFSIHVCYSSDYRLLYDRIP 226 (343)
T ss_pred HHHHHHHHHHhhhcccccCCceEEEEeCCC------cCCChHHHHHHHHHHHHHHhCCCCcEEEEEEcCCChHHHHHHHH
Confidence 567899999999 998 59999432 222232 23334332 22 3555566544 5567788889
Q ss_pred hcCCCEEEEcc
Q 025927 136 KAGADIVSVHC 146 (246)
Q Consensus 136 ~agad~It~H~ 146 (246)
++.+|.+++-.
T Consensus 227 ~~~~d~~~~E~ 237 (343)
T PRK01207 227 ELNIDGYNLEY 237 (343)
T ss_pred hCCCCEEEEEe
Confidence 99999998754
No 247
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=84.76 E-value=20 Score=34.79 Aligned_cols=131 Identities=14% Similarity=0.221 Sum_probs=77.1
Q ss_pred cccChhhHHHHHHHHHHcCCCEEEeeeccCcc---c----CCCCCCHHHHhhcccCCCCCeeEEEeccCcc----cchHH
Q 025927 65 LSANFAKLGEQVKAVELAGCDWIHVDVMDGRF---V----PNITIGPLVVDALRPVTDLPLDVHLMIVEPE----QRVPD 133 (246)
Q Consensus 65 l~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~F---V----pN~tfgp~~I~~ir~~t~~plDvHLMV~~P~----~~i~~ 133 (246)
-+-++.++-+|++.+.+.|++.+-+ .|.+| - ++..| .+.++.+.+..+. ..+.++..+|. ..++.
T Consensus 174 Rsr~~e~Iv~Ei~~l~~~G~~ei~l--~~~~~~~yg~d~~~~~~l-~~Ll~~l~~~~~~-~~ir~~~~~P~~i~~ell~~ 249 (439)
T PRK14328 174 RSRKPEDIIAEIKELVSEGYKEVTL--LGQNVNSYGKDLEEKIDF-ADLLRRVNEIDGL-ERIRFMTSHPKDLSDDLIEA 249 (439)
T ss_pred ccCCHHHHHHHHHHHHHCCCcEEEE--eccccCcCCcCCCCCcCH-HHHHHHHHhcCCC-cEEEEecCChhhcCHHHHHH
Confidence 4556778888999998889887654 33332 1 11222 2455555543332 35777777886 45666
Q ss_pred HHhcC--CCEEEEccCCcc------------cccHHHHHHHHHHc--CCcEE--EEEc-CCCChHHHHHhhhh-----cc
Q 025927 134 FIKAG--ADIVSVHCEQSS------------TIHLHRTLNQIKDL--GAKAG--VVLN-PATSLSAIECVLDV-----VD 189 (246)
Q Consensus 134 ~~~ag--ad~It~H~E~~~------------~~~~~~~i~~Ik~~--G~k~G--lAln-P~Tpve~l~~~l~~-----vD 189 (246)
+.++| +..+++-+|+.+ ..+..+.++.+|+. ++.++ +.+. |+-..++++..++. .|
T Consensus 250 l~~~~~~~~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~~~i~i~~d~IvG~PgET~ed~~~tl~~i~~l~~~ 329 (439)
T PRK14328 250 IADCDKVCEHIHLPVQSGSNRILKKMNRHYTREYYLELVEKIKSNIPDVAITTDIIVGFPGETEEDFEETLDLVKEVRYD 329 (439)
T ss_pred HHhCCCcCceeeeCCCcCCHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEECCCCCHHHHHHHHHHHHhcCCC
Confidence 66665 778888888642 12345667777877 44333 2333 66666666554442 44
Q ss_pred eE--EEEeecCC
Q 025927 190 LV--LIMSVNPG 199 (246)
Q Consensus 190 ~V--LvMsV~PG 199 (246)
.+ ...+..||
T Consensus 330 ~~~~~~~sp~pG 341 (439)
T PRK14328 330 SAFTFIYSKRKG 341 (439)
T ss_pred cccceEecCCCC
Confidence 43 44566777
No 248
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=84.72 E-value=20 Score=33.54 Aligned_cols=122 Identities=9% Similarity=0.091 Sum_probs=74.5
Q ss_pred CCCeeEEEeccCcccchH---HHHhcCCCEEEEccCCc---------------ccccHHHHHHHHHHc---CCcEEEEEc
Q 025927 115 DLPLDVHLMIVEPEQRVP---DFIKAGADIVSVHCEQS---------------STIHLHRTLNQIKDL---GAKAGVVLN 173 (246)
Q Consensus 115 ~~plDvHLMV~~P~~~i~---~~~~agad~It~H~E~~---------------~~~~~~~~i~~Ik~~---G~k~GlAln 173 (246)
..|+-+.|+-.+|+.+.+ ...+.|+|.|=+|.=.- ...-+.++++.+|+. ++.+++=+.
T Consensus 62 e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR 141 (312)
T PRK10550 62 GTLVRIQLLGQYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVR 141 (312)
T ss_pred CCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEE
Confidence 479999999999998886 34567999999996431 011245667777764 367777777
Q ss_pred CCCC-hH---HHHHhhhh--cceEEEEee--cCCCCCCcccHHHHHHHHHHHHHHHhcCCCCeEEEeCCC-Chhhhhhcc
Q 025927 174 PATS-LS---AIECVLDV--VDLVLIMSV--NPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGV-GPKNAYKVP 244 (246)
Q Consensus 174 P~Tp-ve---~l~~~l~~--vD~VLvMsV--~PGfgGQ~F~~~~l~KI~~lr~l~~~~~~~~~I~VDGGI-~~e~i~~l~ 244 (246)
++.. .+ .+...+.. +|.|.|-+- ..||.|.+...+...+|+ +. .++.+..=||| +.+.+.++.
T Consensus 142 ~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik---~~-----~~iPVi~nGdI~t~~da~~~l 213 (312)
T PRK10550 142 LGWDSGERKFEIADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIR---QR-----LTIPVIANGEIWDWQSAQQCM 213 (312)
T ss_pred CCCCCchHHHHHHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHH---hh-----cCCcEEEeCCcCCHHHHHHHH
Confidence 7632 22 33333443 787776432 235555554444444443 32 23557778888 566665543
No 249
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=84.72 E-value=27 Score=32.78 Aligned_cols=156 Identities=13% Similarity=0.181 Sum_probs=88.0
Q ss_pred hhhHHHHHHHHHH-cCCCEEEeeeccCcccCCCCCCHHHHhhc----ccCC-CCCeeEEEeccCcc----cchHHHHhcC
Q 025927 69 FAKLGEQVKAVEL-AGCDWIHVDVMDGRFVPNITIGPLVVDAL----RPVT-DLPLDVHLMIVEPE----QRVPDFIKAG 138 (246)
Q Consensus 69 ~~~l~~~i~~l~~-~g~d~lHiDIMDG~FVpN~tfgp~~I~~i----r~~t-~~plDvHLMV~~P~----~~i~~~~~ag 138 (246)
+..+.+|++.+.. .+++.+++ .+|+. ++ +.++.++.| ++.. ...+++.+- .||. ..++.+.++|
T Consensus 36 ~~~l~~Ei~~~~~~~~~~~i~~--gGGtp--s~-l~~~~l~~L~~~i~~~~~~~~~eitie-~~p~~~t~e~l~~l~~~G 109 (374)
T PRK05799 36 IKALSKEIRNSTKNKKIKSIFI--GGGTP--TY-LSLEALEILKETIKKLNKKEDLEFTVE-GNPGTFTEEKLKILKSMG 109 (374)
T ss_pred HHHHHHHHHhhcCCCceeEEEE--CCCcc--cC-CCHHHHHHHHHHHHhCCCCCCCEEEEE-eCCCcCCHHHHHHHHHcC
Confidence 4556666654422 23566663 45533 32 345555444 2221 112334333 3664 5688889999
Q ss_pred CCEEEEccCCcc------------cccHHHHHHHHHHcCCc-E--EEEEc-CCCChHHHHHhhhh-----cceEEE--Ee
Q 025927 139 ADIVSVHCEQSS------------TIHLHRTLNQIKDLGAK-A--GVVLN-PATSLSAIECVLDV-----VDLVLI--MS 195 (246)
Q Consensus 139 ad~It~H~E~~~------------~~~~~~~i~~Ik~~G~k-~--GlAln-P~Tpve~l~~~l~~-----vD~VLv--Ms 195 (246)
+++|++=+|+.. ..+..+.++.+++.|++ + .+.+. |+...+.++..++. +|.|-+ ++
T Consensus 110 ~~rvsiGvqS~~d~~L~~l~R~~~~~~~~~ai~~l~~~g~~~v~~dli~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~ 189 (374)
T PRK05799 110 VNRLSIGLQAWQNSLLKYLGRIHTFEEFLENYKLARKLGFNNINVDLMFGLPNQTLEDWKETLEKVVELNPEHISCYSLI 189 (374)
T ss_pred CCEEEEECccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEEeccE
Confidence 999999988652 11355678889999975 4 44444 66777766665543 566544 66
Q ss_pred ecCCCC-------CC---cccHHHHHHHHHHHHHHHhcCCCCeEEE
Q 025927 196 VNPGFG-------GQ---SFIESQVKKISDLRRMCLEKGVNPWIEV 231 (246)
Q Consensus 196 V~PGfg-------GQ---~F~~~~l~KI~~lr~l~~~~~~~~~I~V 231 (246)
+.||-. |. +-.+...+-...+++.+.++|+. ..++
T Consensus 190 ~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy~-~ye~ 234 (374)
T PRK05799 190 IEEGTPFYNLYENGKLKLPDEEEEREMYHYTIEFLKEKGYH-QYEI 234 (374)
T ss_pred ecCCCHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCc-EEee
Confidence 778731 21 11122333345567778888874 3444
No 250
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=84.69 E-value=17 Score=32.94 Aligned_cols=21 Identities=33% Similarity=0.501 Sum_probs=18.1
Q ss_pred eccCcccCCCCCCHHHHhhcc
Q 025927 91 VMDGRFVPNITIGPLVVDALR 111 (246)
Q Consensus 91 IMDG~FVpN~tfgp~~I~~ir 111 (246)
.-||.+.||..|+++...+|-
T Consensus 6 LRDG~q~~~~~f~~~~~~~ia 26 (266)
T cd07944 6 LRDGGYVNNWDFGDEFVKAIY 26 (266)
T ss_pred cccCccccCccCCHHHHHHHH
Confidence 469999999999999887763
No 251
>PRK00957 methionine synthase; Provisional
Probab=84.60 E-value=19 Score=32.88 Aligned_cols=142 Identities=16% Similarity=0.318 Sum_probs=76.6
Q ss_pred hHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHH----HHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEEEcc
Q 025927 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPL----VVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHC 146 (246)
Q Consensus 71 ~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~----~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It~H~ 146 (246)
.+.++++++.++|++++.+| |-....++. .++ .++.+.+..+..+-+|+. -+.....+.+.+.++|.+++-+
T Consensus 145 ~~~~~i~~l~~~G~~~IqiD--EP~l~~~~~-~~~~~~~~~~~~~~~i~~~v~lH~C-G~~~~i~~~l~~~~vd~i~ld~ 220 (305)
T PRK00957 145 ALRKEAEALEKAGVAMIQID--EPILSTGAY-DLEVAKKAIDIITKGLNVPVAMHVC-GDVSNIIDDLLKFNVDILDHEF 220 (305)
T ss_pred HHHHHHHHHHHcCCCEEEec--ChhhhcCCc-hHHHHHHHHHHHHHhhCCceEEEEC-CCcHHHHHHHHhCCCCEEEEee
Confidence 45688899999999999998 644443321 122 233322222455667876 5656667888889999988876
Q ss_pred CCcccccHHHHHHHHHH---cCCcEEEEEc-CCC----ChHHHHHhhh-hcceEE--EEeecCCCCCCcc-cHHHHHHHH
Q 025927 147 EQSSTIHLHRTLNQIKD---LGAKAGVVLN-PAT----SLSAIECVLD-VVDLVL--IMSVNPGFGGQSF-IESQVKKIS 214 (246)
Q Consensus 147 E~~~~~~~~~~i~~Ik~---~G~k~GlAln-P~T----pve~l~~~l~-~vD~VL--vMsV~PGfgGQ~F-~~~~l~KI~ 214 (246)
-. ...+ +..+++ .|..+++-+= +.+ +.+.+...+. ..+.+- -..+.|++|=... .+...+|++
T Consensus 221 ~~-~~~~----l~~l~~~~~~~k~l~~GvId~~~~~~e~~e~v~~~i~~~~~~~~~~~l~lsp~CGl~~~~~~~~~~kL~ 295 (305)
T PRK00957 221 AS-NKKN----LEILEEKDLIGKKIGFGCVDTKSKSVESVDEIKALIEEGIEILGAENILIDPDCGMRMLPRDVAFEKLK 295 (305)
T ss_pred cC-CCCC----HHHHhhhccCCCEEEEEEEcCCCCCCCCHHHHHHHHHHHHHhcCHHHEEECCCcCCCcCCHHHHHHHHH
Confidence 21 1112 333443 3544544333 223 2233433332 233221 1345675542221 345677887
Q ss_pred HHHHHHH
Q 025927 215 DLRRMCL 221 (246)
Q Consensus 215 ~lr~l~~ 221 (246)
.+.+...
T Consensus 296 ~l~~aa~ 302 (305)
T PRK00957 296 NMVEAAR 302 (305)
T ss_pred HHHHHHH
Confidence 7776543
No 252
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=84.41 E-value=7.2 Score=34.00 Aligned_cols=121 Identities=15% Similarity=0.186 Sum_probs=76.1
Q ss_pred eeeecccChhhHHHHHHHHHHcCCCEEE--eeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEecc--------Ccccc
Q 025927 61 SPSILSANFAKLGEQVKAVELAGCDWIH--VDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIV--------EPEQR 130 (246)
Q Consensus 61 sPSIl~aD~~~l~~~i~~l~~~g~d~lH--iDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~--------~P~~~ 130 (246)
+.|+..-+...+.+++++++..|+|++= +|..++ .+...-.+.++.||+.+++|+-+++=.. .++.|
T Consensus 1 cv~l~~~~~~~~~~~~~~~~~~~~D~vElRlD~l~~---~~~~~~~~~l~~lr~~~~~piI~T~R~~~eGG~~~~~~~~~ 77 (224)
T PF01487_consen 1 CVPLTGSTLEELLAELEEAESSGADAVELRLDYLEN---DSAEDISEQLAELRRSLDLPIIFTVRTKEEGGRFQGSEEEY 77 (224)
T ss_dssp EEEE--SSHHHHHHHHHHHHHTTTSEEEEEGGGSTT---TSHHHHHHHHHHHHHHCTSEEEEE--BGGGTSSBSS-HHHH
T ss_pred CEeeCCCCHHHHHHHHHHHHhcCCCEEEEEeccccc---cChHHHHHHHHHHHHhCCCCEEEEecccccCCCCcCCHHHH
Confidence 3578888999999999999987899875 455554 3334445778888888899999988754 23344
Q ss_pred ---hHHHHhcCCCEEEEccCCcccccHHHHHHHHHHcCCcEEEEEc--CCCCh-HHHHHhhh
Q 025927 131 ---VPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLN--PATSL-SAIECVLD 186 (246)
Q Consensus 131 ---i~~~~~agad~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAln--P~Tpv-e~l~~~l~ 186 (246)
+...++.|+++|-+-++. ..+........++.|.++=+... ..||- +.+...+.
T Consensus 78 ~~ll~~~~~~~~d~iDiE~~~--~~~~~~~~~~~~~~~~~iI~S~H~f~~tp~~~~l~~~~~ 137 (224)
T PF01487_consen 78 LELLERAIRLGPDYIDIELDL--FPDDLKSRLAARKGGTKIILSYHDFEKTPSWEELIELLE 137 (224)
T ss_dssp HHHHHHHHHHTSSEEEEEGGC--CHHHHHHHHHHHHTTSEEEEEEEESS---THHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEEccc--chhHHHHHHHHhhCCCeEEEEeccCCCCCCHHHHHHHHH
Confidence 445567799999987763 22322224555677778777766 34554 33444443
No 253
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=84.37 E-value=11 Score=36.05 Aligned_cols=115 Identities=12% Similarity=0.206 Sum_probs=63.8
Q ss_pred EEEecc---Ccc--cchHHHHhcC--CCEEEEccCCcccccHHHHHHHHHHcCC-cEEEEEcCCCChHHHHHhhh-hcce
Q 025927 120 VHLMIV---EPE--QRVPDFIKAG--ADIVSVHCEQSSTIHLHRTLNQIKDLGA-KAGVVLNPATSLSAIECVLD-VVDL 190 (246)
Q Consensus 120 vHLMV~---~P~--~~i~~~~~ag--ad~It~H~E~~~~~~~~~~i~~Ik~~G~-k~GlAlnP~Tpve~l~~~l~-~vD~ 190 (246)
-|++|. +|+ ..++.++++| +|.|++-.-.--.....+.+++||+.-- ..=++=|-.|+ +..+.+++ -+|.
T Consensus 96 ~~~~vsvG~~~~d~er~~~L~~a~~~~d~iviD~AhGhs~~~i~~ik~ir~~~p~~~viaGNV~T~-e~a~~Li~aGAD~ 174 (343)
T TIGR01305 96 QNVAVSSGSSDNDLEKMTSILEAVPQLKFICLDVANGYSEHFVEFVKLVREAFPEHTIMAGNVVTG-EMVEELILSGADI 174 (343)
T ss_pred ceEEEEeccCHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHhhCCCCeEEEecccCH-HHHHHHHHcCCCE
Confidence 355554 443 4577888885 9999985432112345677888887532 22222233444 44445554 4886
Q ss_pred EEEEeecCCC--CCCcccHH---HHHHHHHHHHHHHhcCCCCeEEEeCCCChh
Q 025927 191 VLIMSVNPGF--GGQSFIES---QVKKISDLRRMCLEKGVNPWIEVDGGVGPK 238 (246)
Q Consensus 191 VLvMsV~PGf--gGQ~F~~~---~l~KI~~lr~l~~~~~~~~~I~VDGGI~~e 238 (246)
+..++=||. +++...-- .+.-|.+..+.. ++++..|..||||+..
T Consensus 175 -ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~aa--~~~~v~VIaDGGIr~~ 224 (343)
T TIGR01305 175 -VKVGIGPGSVCTTRTKTGVGYPQLSAVIECADAA--HGLKGHIISDGGCTCP 224 (343)
T ss_pred -EEEcccCCCcccCceeCCCCcCHHHHHHHHHHHh--ccCCCeEEEcCCcCch
Confidence 556777773 45543222 333333333333 2345679999999753
No 254
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=84.35 E-value=4.9 Score=37.15 Aligned_cols=131 Identities=14% Similarity=0.176 Sum_probs=90.4
Q ss_pred eeecccChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCee---EEEe------------ccC
Q 025927 62 PSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLD---VHLM------------IVE 126 (246)
Q Consensus 62 PSIl~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plD---vHLM------------V~~ 126 (246)
|=.+..|-..-.+.+++..+.|++++.+|--+-.|=.|+...-++++..+++ +.+++ .||= ..+
T Consensus 76 pv~lHlDH~~~~e~i~~Al~~G~tsVm~d~s~~~~~eni~~t~~v~~~a~~~-gv~veaE~ghlG~~d~~~~~~g~s~t~ 154 (281)
T PRK06806 76 PVAVHFDHGMTFEKIKEALEIGFTSVMFDGSHLPLEENIQKTKEIVELAKQY-GATVEAEIGRVGGSEDGSEDIEMLLTS 154 (281)
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHc-CCeEEEEeeeECCccCCcccccceeCC
Confidence 5567788877678888888999999999988888878887777766665554 55555 5664 456
Q ss_pred cccchHHHH-hcCCCEEEE-----ccCCc--ccccHHHHHHHHHHcCCcEEEEEcC--CCChHHHHHhhhh-cceEEEEe
Q 025927 127 PEQRVPDFI-KAGADIVSV-----HCEQS--STIHLHRTLNQIKDLGAKAGVVLNP--ATSLSAIECVLDV-VDLVLIMS 195 (246)
Q Consensus 127 P~~~i~~~~-~agad~It~-----H~E~~--~~~~~~~~i~~Ik~~G~k~GlAlnP--~Tpve~l~~~l~~-vD~VLvMs 195 (246)
|+.-. .|. +.|+|++.+ |.-.. ...+ ...|+.|++. ..+-|++-- +.+.+.+..++.. ++.|-+.|
T Consensus 155 ~eea~-~f~~~tg~DyLAvaiG~~hg~~~~~~~l~-~~~L~~i~~~-~~iPlV~hG~SGI~~e~~~~~i~~G~~kinv~T 231 (281)
T PRK06806 155 TTEAK-RFAEETDVDALAVAIGNAHGMYNGDPNLR-FDRLQEINDV-VHIPLVLHGGSGISPEDFKKCIQHGIRKINVAT 231 (281)
T ss_pred HHHHH-HHHHhhCCCEEEEccCCCCCCCCCCCccC-HHHHHHHHHh-cCCCEEEECCCCCCHHHHHHHHHcCCcEEEEhH
Confidence 66644 454 469999998 33110 0112 3567777765 356677777 7888999888754 77777765
Q ss_pred e
Q 025927 196 V 196 (246)
Q Consensus 196 V 196 (246)
-
T Consensus 232 ~ 232 (281)
T PRK06806 232 A 232 (281)
T ss_pred H
Confidence 3
No 255
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=84.20 E-value=11 Score=34.16 Aligned_cols=118 Identities=15% Similarity=0.201 Sum_probs=72.1
Q ss_pred eccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEEE-ccCCcccccHHHHHHHHHHcCCcEE
Q 025927 91 VMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSV-HCEQSSTIHLHRTLNQIKDLGAKAG 169 (246)
Q Consensus 91 IMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It~-H~E~~~~~~~~~~i~~Ik~~G~k~G 169 (246)
.-||...|+..|+.+...+| ++.+.++|++.|-+ ++-. .+...+.++.+.+.+.+.+
T Consensus 8 LRDG~Q~~~~~~s~~~k~~i--------------------~~~L~~~Gv~~IEvG~P~~--~~~~~~~~~~l~~~~~~~~ 65 (262)
T cd07948 8 LREGEQFANAFFDTEDKIEI--------------------AKALDAFGVDYIELTSPAA--SPQSRADCEAIAKLGLKAK 65 (262)
T ss_pred CCCcCcCCCCCCCHHHHHHH--------------------HHHHHHcCCCEEEEECCCC--CHHHHHHHHHHHhCCCCCc
Confidence 57899888888887755433 56778888888766 3332 2344556666666665555
Q ss_pred EEEcCCCChHHHHHhhhh-cceEEE-EeecCCCC----CCcccHHHHHHHHHHHHHHHhcCCCCeEEE
Q 025927 170 VVLNPATSLSAIECVLDV-VDLVLI-MSVNPGFG----GQSFIESQVKKISDLRRMCLEKGVNPWIEV 231 (246)
Q Consensus 170 lAlnP~Tpve~l~~~l~~-vD~VLv-MsV~PGfg----GQ~F~~~~l~KI~~lr~l~~~~~~~~~I~V 231 (246)
+.-----..+.++..++. +|.|-+ +++.+.+. |.. .++.+++++++-++..+.|+.+.+.+
T Consensus 66 v~~~~r~~~~di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~-~~e~~~~~~~~i~~a~~~G~~v~~~~ 132 (262)
T cd07948 66 ILTHIRCHMDDARIAVETGVDGVDLVFGTSPFLREASHGKS-ITEIIESAVEVIEFVKSKGIEVRFSS 132 (262)
T ss_pred EEEEecCCHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCC-HHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 533222334566666553 675544 55655321 222 46778888888888777776554443
No 256
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=84.03 E-value=3.9 Score=38.34 Aligned_cols=77 Identities=14% Similarity=0.249 Sum_probs=50.7
Q ss_pred cHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhhh-cceEEEEeecCCCCCCcccHHHHHHHHHHHHHHHhcCCCCeEEE
Q 025927 153 HLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV 231 (246)
Q Consensus 153 ~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~~-vD~VLvMsV~PGfgGQ~F~~~~l~KI~~lr~l~~~~~~~~~I~V 231 (246)
.+.+.++.+|+.-...=+.+-.+| ++++++.++. +|.|++= +|.|+.++++- +++. .+..|++
T Consensus 194 ~i~~av~~~r~~~~~~kIeVEv~s-leea~ea~~~gaDiI~LD---------n~s~e~~~~av---~~~~---~~~~iea 257 (296)
T PRK09016 194 SIRQAVEKAFWLHPDVPVEVEVEN-LDELDQALKAGADIIMLD---------NFTTEQMREAV---KRTN---GRALLEV 257 (296)
T ss_pred cHHHHHHHHHHhCCCCCEEEEeCC-HHHHHHHHHcCCCEEEeC---------CCChHHHHHHH---Hhhc---CCeEEEE
Confidence 356677777755322226777666 7777787775 8998884 33344444333 3332 2578999
Q ss_pred eCCCChhhhhhccc
Q 025927 232 DGGVGPKNAYKVPN 245 (246)
Q Consensus 232 DGGI~~e~i~~l~~ 245 (246)
=||||.+|++++++
T Consensus 258 SGGI~~~ni~~yA~ 271 (296)
T PRK09016 258 SGNVTLETLREFAE 271 (296)
T ss_pred ECCCCHHHHHHHHh
Confidence 99999999998764
No 257
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=83.89 E-value=19 Score=34.12 Aligned_cols=88 Identities=17% Similarity=0.107 Sum_probs=55.1
Q ss_pred HHhhcccCC-CCCeeEEEeccCc-----ccchHHHHhcCCCEEEEccCC----c---ccccHH---HHHHHHHHc-CCcE
Q 025927 106 VVDALRPVT-DLPLDVHLMIVEP-----EQRVPDFIKAGADIVSVHCEQ----S---STIHLH---RTLNQIKDL-GAKA 168 (246)
Q Consensus 106 ~I~~ir~~t-~~plDvHLMV~~P-----~~~i~~~~~agad~It~H~E~----~---~~~~~~---~~i~~Ik~~-G~k~ 168 (246)
.++.+|+.+ +.|+-+-|-+..+ +...+....++||.+.+|+.. . ...+.. +.++.+++. ++.+
T Consensus 110 ~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~~~~vPV 189 (352)
T PRK05437 110 SFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQRAVEMIEADALQIHLNPLQELVQPEGDRDFRGWLDNIAEIVSALPVPV 189 (352)
T ss_pred HHHHHHHHCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCccchhhcCCCCcccHHHHHHHHHHHHHhhCCCE
Confidence 445557665 7788887766554 444444445789999999832 1 122333 677777765 6666
Q ss_pred EEEEcC-CCChHHHHHhhhh-cceEEE
Q 025927 169 GVVLNP-ATSLSAIECVLDV-VDLVLI 193 (246)
Q Consensus 169 GlAlnP-~Tpve~l~~~l~~-vD~VLv 193 (246)
++=+.. +++.+..+.+.+. +|.|.|
T Consensus 190 ivK~~g~g~s~~~a~~l~~~Gvd~I~V 216 (352)
T PRK05437 190 IVKEVGFGISKETAKRLADAGVKAIDV 216 (352)
T ss_pred EEEeCCCCCcHHHHHHHHHcCCCEEEE
Confidence 654442 3667777666543 899888
No 258
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=83.87 E-value=12 Score=37.49 Aligned_cols=157 Identities=20% Similarity=0.260 Sum_probs=80.8
Q ss_pred hhHHHHHHHHHHcCCCEEEeeecc--CcccCCCCCCHHHHhhcccCCCC-----CeeEEEecc-------CcccchHHHH
Q 025927 70 AKLGEQVKAVELAGCDWIHVDVMD--GRFVPNITIGPLVVDALRPVTDL-----PLDVHLMIV-------EPEQRVPDFI 135 (246)
Q Consensus 70 ~~l~~~i~~l~~~g~d~lHiDIMD--G~FVpN~tfgp~~I~~ir~~t~~-----plDvHLMV~-------~P~~~i~~~~ 135 (246)
..+.+-++.+.+.+++++=+ .| |.++==++. -++++.+ .+.+- .-+=+|+|- +-..-++.++
T Consensus 182 ~sL~eAl~~m~~~~~~~LPV--VD~~g~LvGvITr-~DIlk~~-~~p~~~~~~~d~~~~l~vgaavg~~~~~~~r~~~l~ 257 (505)
T PLN02274 182 IDLEEAEAVLKDSKKGKLPL--VNEDGELVDLVTR-TDVKRVK-GYPKLGKPSVGKDGKLLVGAAIGTRESDKERLEHLV 257 (505)
T ss_pred CCHHHHHHHHHHcCCCEEEE--EcCCCeEEEEEEH-HHHHHHh-hCcCccccccCCCCCEEEEEEEcCCccHHHHHHHHH
Confidence 35566777777777776533 33 333221222 1222222 12111 112355552 2235688999
Q ss_pred hcCCCEEEEccCCcccccHHHHHHHHHHcCCcEEEEE-cCCCChHHHHHhhhh-cceEEEEeecCCC---------CCCc
Q 025927 136 KAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL-NPATSLSAIECVLDV-VDLVLIMSVNPGF---------GGQS 204 (246)
Q Consensus 136 ~agad~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAl-nP~Tpve~l~~~l~~-vD~VLvMsV~PGf---------gGQ~ 204 (246)
++|+|.|.+-.=.-......+++++||+.--..-|.. |-.| .+..+..++. +|.|.+ ++-||. .|.+
T Consensus 258 ~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t-~e~a~~a~~aGaD~i~v-g~g~G~~~~t~~~~~~g~~ 335 (505)
T PLN02274 258 KAGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVT-MYQAQNLIQAGVDGLRV-GMGSGSICTTQEVCAVGRG 335 (505)
T ss_pred HcCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCC-HHHHHHHHHcCcCEEEE-CCCCCccccCccccccCCC
Confidence 9999999985421001123478899997532334433 4444 4555555554 898766 544442 1222
Q ss_pred ccHHHHHHHHHHHHHHHhcCCCCeEEEeCCCChh
Q 025927 205 FIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPK 238 (246)
Q Consensus 205 F~~~~l~KI~~lr~l~~~~~~~~~I~VDGGI~~e 238 (246)
. ...+..+. ++.++. +..|..||||+..
T Consensus 336 ~-~~~i~~~~---~~~~~~--~vpVIadGGI~~~ 363 (505)
T PLN02274 336 Q-ATAVYKVA---SIAAQH--GVPVIADGGISNS 363 (505)
T ss_pred c-ccHHHHHH---HHHHhc--CCeEEEeCCCCCH
Confidence 2 22333344 443332 4578899999753
No 259
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=83.76 E-value=4.2 Score=41.48 Aligned_cols=109 Identities=17% Similarity=0.214 Sum_probs=73.4
Q ss_pred ChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchH--HHHhcCCCEEEEc
Q 025927 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVP--DFIKAGADIVSVH 145 (246)
Q Consensus 68 D~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~--~~~~agad~It~H 145 (246)
++..+.+.+++++++|+|+|-+==|=|...|.-.. +.+++||+..++|+.+|.=-.-=..... .-+++||++|-.=
T Consensus 153 ~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~--~lv~~lk~~~~~pi~~H~Hnt~GlA~An~laAieAGa~~vD~a 230 (593)
T PRK14040 153 TLQTWVDLAKQLEDMGVDSLCIKDMAGLLKPYAAY--ELVSRIKKRVDVPLHLHCHATTGLSTATLLKAIEAGIDGVDTA 230 (593)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHH--HHHHHHHHhcCCeEEEEECCCCchHHHHHHHHHHcCCCEEEec
Confidence 45667788888999999999886677777665332 4677778777888888875443222222 2367899987665
Q ss_pred cCCc----ccccHHHHHHHHHHcCCcEEEEEcCCCCh
Q 025927 146 CEQS----STIHLHRTLNQIKDLGAKAGVVLNPATSL 178 (246)
Q Consensus 146 ~E~~----~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpv 178 (246)
+-.. +....+.++..++..|.+.|+-+..-+.+
T Consensus 231 i~glG~~~Gn~~le~vv~~L~~~~~~~gidl~~l~~i 267 (593)
T PRK14040 231 ISSMSMTYGHSATETLVATLEGTERDTGLDILKLEEI 267 (593)
T ss_pred cccccccccchhHHHHHHHHHhcCCCcCCCHHHHHHH
Confidence 5432 23456778888888888888655433333
No 260
>PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional
Probab=83.75 E-value=12 Score=39.37 Aligned_cols=142 Identities=20% Similarity=0.322 Sum_probs=81.2
Q ss_pred hHHHHHHHHHHcCCCEEEeeeccCcccCCCCCC--------HHHHhhcccCC-----CCCeeEEEeccCcccchHHHHhc
Q 025927 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIG--------PLVVDALRPVT-----DLPLDVHLMIVEPEQRVPDFIKA 137 (246)
Q Consensus 71 ~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfg--------p~~I~~ir~~t-----~~plDvHLMV~~P~~~i~~~~~a 137 (246)
.+.++++.|+++|+++|.+|==.-. -.+... ...++.++..+ +..+..|+.-.|-...++.+.+.
T Consensus 582 al~~Ev~~L~~aG~~~IQiDEPal~--e~~~~~~~~~~~~l~~~v~a~n~a~~~~~~~~~i~tH~C~g~~~~i~~~i~~l 659 (758)
T PRK05222 582 AIRDEVLDLEAAGIKIIQIDEPALR--EGLPLRRSDWDAYLDWAVEAFRLATSGVKDETQIHTHMCYSEFNDIIDAIAAL 659 (758)
T ss_pred HHHHHHHHHHHcCCCEEEeeCchhh--hcCcccccCHHHHHHHHHHHHHHHHcCCCCCCEEEEEEeccChHHHHHHHHhC
Confidence 4568999999999999999943322 111111 12245554321 34567777766777788899889
Q ss_pred CCCEEEEccCCcccccHHHHHHHHHHcC--CcEEEEE--cCCCC---hHHHHHhh----hhcceEEEEeecC--CCCCCc
Q 025927 138 GADIVSVHCEQSSTIHLHRTLNQIKDLG--AKAGVVL--NPATS---LSAIECVL----DVVDLVLIMSVNP--GFGGQS 204 (246)
Q Consensus 138 gad~It~H~E~~~~~~~~~~i~~Ik~~G--~k~GlAl--nP~Tp---ve~l~~~l----~~vD~VLvMsV~P--GfgGQ~ 204 (246)
.+|.+++-... .+ ...++.+++.+ ..+|+-+ --..- ++.+...| ..++ .--+.|+| ||.--
T Consensus 660 ~vD~~~lE~~r---s~-~e~L~~~~~~~~~~~iglGVvd~~s~~ves~eei~~rI~~a~~~v~-~e~l~v~PdCGl~t~- 733 (758)
T PRK05222 660 DADVISIETSR---SD-MELLDAFEDFGYPNEIGPGVYDIHSPRVPSVEEIEELLRKALEVIP-AERLWVNPDCGLKTR- 733 (758)
T ss_pred CCCEEEEEecC---CC-chhHHHhhccCCCCeEEEEEEcCCCCCCCCHHHHHHHHHHHHHhCC-hheEEEeCCCCCcCC-
Confidence 99999875432 12 34566666643 2344432 22222 24333333 3333 23467788 55442
Q ss_pred ccHHHHHHHHHHHHHH
Q 025927 205 FIESQVKKISDLRRMC 220 (246)
Q Consensus 205 F~~~~l~KI~~lr~l~ 220 (246)
-.+++..|++.+.+..
T Consensus 734 ~~~~~~~kL~~mv~aa 749 (758)
T PRK05222 734 GWEETIAALKNMVAAA 749 (758)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 3456778887775544
No 261
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=83.70 E-value=21 Score=33.34 Aligned_cols=89 Identities=15% Similarity=0.107 Sum_probs=51.7
Q ss_pred HHhhcccCCC-CCeeEEEeccC-----cccchHHHHhcCCCEEEEccCC----c---ccccHH---HHHHHHHHc-CCcE
Q 025927 106 VVDALRPVTD-LPLDVHLMIVE-----PEQRVPDFIKAGADIVSVHCEQ----S---STIHLH---RTLNQIKDL-GAKA 168 (246)
Q Consensus 106 ~I~~ir~~t~-~plDvHLMV~~-----P~~~i~~~~~agad~It~H~E~----~---~~~~~~---~~i~~Ik~~-G~k~ 168 (246)
.++.+|+.+. .|+-+=+-+.. ++.+.+....++||.+-+|+.. . ...+.. +.|+.+++. .+.+
T Consensus 102 ~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~~~i~~~~adalel~l~~~q~~~~~~~~~df~~~~~~i~~l~~~~~vPV 181 (326)
T cd02811 102 SFTVVREAPPNGPLIANLGAVQLNGYGVEEARRAVEMIEADALAIHLNPLQEAVQPEGDRDFRGWLERIEELVKALSVPV 181 (326)
T ss_pred HHHHHHHhCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCcchHhhcCCCCCcCHHHHHHHHHHHHHhcCCCE
Confidence 4455566554 67555555433 4444444455789999999842 1 122343 566667664 5555
Q ss_pred EEEEcCC-CChHHHHHhhhh-cceEEEE
Q 025927 169 GVVLNPA-TSLSAIECVLDV-VDLVLIM 194 (246)
Q Consensus 169 GlAlnP~-Tpve~l~~~l~~-vD~VLvM 194 (246)
.+=.... ++.+....+.+. +|.|.|=
T Consensus 182 ivK~~g~g~s~~~a~~l~~~Gvd~I~vs 209 (326)
T cd02811 182 IVKEVGFGISRETAKRLADAGVKAIDVA 209 (326)
T ss_pred EEEecCCCCCHHHHHHHHHcCCCEEEEC
Confidence 5544333 677777666543 8998873
No 262
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=83.66 E-value=14 Score=34.41 Aligned_cols=104 Identities=16% Similarity=0.189 Sum_probs=59.6
Q ss_pred ChhhHHHHHHHHHHc-CCCE--EEee-eccCcccCCCCCCHHHHhhc----ccCCCCCeeEEEeccCcc----cchHHHH
Q 025927 68 NFAKLGEQVKAVELA-GCDW--IHVD-VMDGRFVPNITIGPLVVDAL----RPVTDLPLDVHLMIVEPE----QRVPDFI 135 (246)
Q Consensus 68 D~~~l~~~i~~l~~~-g~d~--lHiD-IMDG~FVpN~tfgp~~I~~i----r~~t~~plDvHLMV~~P~----~~i~~~~ 135 (246)
+..++.++++.+.+. +.+. +=+. ..+|.|.....+.++...+| ++...+ ..+-+ -.+|+ ..++.+.
T Consensus 47 s~e~i~~~i~~~~~~~~~~~~~~~ikif~sgsf~D~~~~~~~~~~~i~~~l~~~~~~-~~i~~-esrpd~i~~e~L~~l~ 124 (313)
T TIGR01210 47 TEENLINQFDEAIEKYKEKIKDFVIKIFTSGSFLDDREVPKETRNYIFEKIAQRDNL-KEVVV-ESRPEFIDEEKLEELR 124 (313)
T ss_pred ChhHHHHHHHHHHHHhhcccccEEEEEecCCCcCCcCcCCHHHHHHHHHHHHhcCCc-ceEEE-EeCCCcCCHHHHHHHH
Confidence 556777888776643 2221 0012 46777776655555554443 332111 11111 12554 3566788
Q ss_pred hcCCC-EEEEccCCcccc-------------cHHHHHHHHHHcCCcEEEEEc
Q 025927 136 KAGAD-IVSVHCEQSSTI-------------HLHRTLNQIKDLGAKAGVVLN 173 (246)
Q Consensus 136 ~agad-~It~H~E~~~~~-------------~~~~~i~~Ik~~G~k~GlAln 173 (246)
++|.+ .|++=+|+.+.. +..+.++.+|++|+++..-+-
T Consensus 125 ~aG~~~~v~iG~ES~~d~~L~~~inKg~t~~~~~~ai~~~~~~Gi~v~~~~i 176 (313)
T TIGR01210 125 KIGVNVEVAVGLETANDRIREKSINKGSTFEDFIRAAELARKYGAGVKAYLL 176 (313)
T ss_pred HcCCCEEEEEecCcCCHHHHHHhhCCCCCHHHHHHHHHHHHHcCCcEEEEEE
Confidence 99998 799999975221 233677888999988765544
No 263
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=83.60 E-value=2.3 Score=39.02 Aligned_cols=76 Identities=24% Similarity=0.226 Sum_probs=52.6
Q ss_pred ChhhHHHHHHHHHHcCCCEE----------EeeeccCcccCC----CCC-----------CHHHHhhcccCC--CCCeeE
Q 025927 68 NFAKLGEQVKAVELAGCDWI----------HVDVMDGRFVPN----ITI-----------GPLVVDALRPVT--DLPLDV 120 (246)
Q Consensus 68 D~~~l~~~i~~l~~~g~d~l----------HiDIMDG~FVpN----~tf-----------gp~~I~~ir~~t--~~plDv 120 (246)
|..++.+-++.++++|+|.+ ++|+..+..++. ... ..+.|..+++.. ++|+-.
T Consensus 178 ~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig 257 (299)
T cd02940 178 NITDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLPISG 257 (299)
T ss_pred CchhHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCcEEE
Confidence 56678888899999999988 578777665442 111 156777777766 566555
Q ss_pred EEeccCcccchHHHHhcCCCEEEE
Q 025927 121 HLMIVEPEQRVPDFIKAGADIVSV 144 (246)
Q Consensus 121 HLMV~~P~~~i~~~~~agad~It~ 144 (246)
===|.+++..++.+ .+||+.|-+
T Consensus 258 ~GGI~~~~da~~~l-~aGA~~V~i 280 (299)
T cd02940 258 IGGIESWEDAAEFL-LLGASVVQV 280 (299)
T ss_pred ECCCCCHHHHHHHH-HcCCChheE
Confidence 44566777877665 599997664
No 264
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=83.51 E-value=13 Score=35.28 Aligned_cols=109 Identities=15% Similarity=0.195 Sum_probs=60.5
Q ss_pred eEEEeccC-cc--cchHHHHhcCC--CEEEE-----ccCCcccccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhhh-
Q 025927 119 DVHLMIVE-PE--QRVPDFIKAGA--DIVSV-----HCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV- 187 (246)
Q Consensus 119 DvHLMV~~-P~--~~i~~~~~aga--d~It~-----H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~~- 187 (246)
-|=+-+.. |+ .-+++++++|+ |.|.+ |.+ ...+++++||+.--.+-|....-++.+....+++.
T Consensus 87 ~v~~~vg~~~~~~~~~~~Lv~ag~~~d~i~iD~a~gh~~-----~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~aG 161 (326)
T PRK05458 87 IASISVGVKDDEYDFVDQLAAEGLTPEYITIDIAHGHSD-----SVINMIQHIKKHLPETFVIAGNVGTPEAVRELENAG 161 (326)
T ss_pred EEEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCCCchH-----HHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHHcC
Confidence 34444443 33 45678899955 99999 766 35678999987543344555323356666776654
Q ss_pred cceEEEEeecCCC-------CCCcccHHHHHHHHHHHHHHHhcCCCCeEEEeCCCChh
Q 025927 188 VDLVLIMSVNPGF-------GGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPK 238 (246)
Q Consensus 188 vD~VLvMsV~PGf-------gGQ~F~~~~l~KI~~lr~l~~~~~~~~~I~VDGGI~~e 238 (246)
+|.|.+ +.-||- .|...-.-.+.-++++++.. +..|-.||||...
T Consensus 162 ad~i~v-g~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~~-----~ipVIAdGGI~~~ 213 (326)
T PRK05458 162 ADATKV-GIGPGKVCITKIKTGFGTGGWQLAALRWCAKAA-----RKPIIADGGIRTH 213 (326)
T ss_pred cCEEEE-CCCCCcccccccccCCCCCccHHHHHHHHHHHc-----CCCEEEeCCCCCH
Confidence 888443 333331 11111100222344444332 2468899999643
No 265
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=83.46 E-value=30 Score=34.39 Aligned_cols=146 Identities=16% Similarity=0.166 Sum_probs=83.4
Q ss_pred hhhHHHHHHHHHHcCCCEEEee---ecc--CcccCCCCCCHHHHhhcccC-CCCCeeEEEeccC-------ccc----ch
Q 025927 69 FAKLGEQVKAVELAGCDWIHVD---VMD--GRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVE-------PEQ----RV 131 (246)
Q Consensus 69 ~~~l~~~i~~l~~~g~d~lHiD---IMD--G~FVpN~tfgp~~I~~ir~~-t~~plDvHLMV~~-------P~~----~i 131 (246)
....-+-++.|.++|++.|=+= -.| ..|+..- -.+.++.+++. .+.++-+.+-..| |++ ++
T Consensus 24 t~dkl~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl~e~--p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~~dDvv~~fv 101 (467)
T PRK14041 24 TEDMLPALEAFDRMGFYSMEVWGGATFDVCVRFLNEN--PWERLKEIRKRLKNTKIQMLLRGQNLVGYRHYADDVVELFV 101 (467)
T ss_pred HHHHHHHHHHHHHcCCCEEEecCCccchhhhcccCCC--HHHHHHHHHHhCCCCEEEEEeccccccCcccccchhhHHHH
Confidence 3444456677788898876540 011 1333221 24667777664 4555655555544 333 25
Q ss_pred HHHHhcCCCEEEEccCCcccccHHHHHHHHHHcCCcEEEEEc----CCCChHHHHHhhhh-----cceEEEEeecCCCCC
Q 025927 132 PDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLN----PATSLSAIECVLDV-----VDLVLIMSVNPGFGG 202 (246)
Q Consensus 132 ~~~~~agad~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAln----P~Tpve~l~~~l~~-----vD~VLvMsV~PGfgG 202 (246)
+..+++|+|.|.+=.-.....+..+.++..|+.|..+-.++. |..+++.+.++... +|.|-+ ..=.|
T Consensus 102 ~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~e~~~~~a~~l~~~Gad~I~i----~Dt~G 177 (467)
T PRK14041 102 KKVAEYGLDIIRIFDALNDIRNLEKSIEVAKKHGAHVQGAISYTVSPVHTLEYYLEFARELVDMGVDSICI----KDMAG 177 (467)
T ss_pred HHHHHCCcCEEEEEEeCCHHHHHHHHHHHHHHCCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEE----CCccC
Confidence 566778999766643322234677889999999998876653 55556666655443 444333 12334
Q ss_pred CcccHHHHHHHHHHHHHH
Q 025927 203 QSFIESQVKKISDLRRMC 220 (246)
Q Consensus 203 Q~F~~~~l~KI~~lr~l~ 220 (246)
-..=..+.+-++.+|+..
T Consensus 178 ~l~P~~v~~Lv~~lk~~~ 195 (467)
T PRK14041 178 LLTPKRAYELVKALKKKF 195 (467)
T ss_pred CcCHHHHHHHHHHHHHhc
Confidence 444455666666666553
No 266
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=83.45 E-value=20 Score=31.59 Aligned_cols=111 Identities=14% Similarity=0.197 Sum_probs=70.8
Q ss_pred EEeeeecccChhhHHHHHHHHHHcCCCEEE--eeeccCcccCCCCCCHHHHhhccc-CCCCCeeEEEeccC--------c
Q 025927 59 IVSPSILSANFAKLGEQVKAVELAGCDWIH--VDVMDGRFVPNITIGPLVVDALRP-VTDLPLDVHLMIVE--------P 127 (246)
Q Consensus 59 ~IsPSIl~aD~~~l~~~i~~l~~~g~d~lH--iDIMDG~FVpN~tfgp~~I~~ir~-~t~~plDvHLMV~~--------P 127 (246)
+|+.++...+..+...+++.+ ..|+|.+= +|..+..- +...-...+++++. .+++|+-+|+-... .
T Consensus 1 ~i~v~~~~~~~~~~~~~~~~~-~~~aD~vElRlD~l~~~~--~~~~~~~~~~~~~~~~~~~piI~T~R~~~eGG~~~~~~ 77 (228)
T TIGR01093 1 KIFVPLTAPDLEEALATAEKI-CKGADIVELRVDLLKDPS--SNNDVDALIEQLSQLRPDKPLIFTIRTISEGGKFPGNE 77 (228)
T ss_pred CEEEEccCCCHHHHHHHHHHh-ccCCCEEEEEechhcccC--cHHHHHHHHHHHHHhcCCCcEEEEECChhhCCCCCCCH
Confidence 367888889988988899888 67899854 46543211 10000123444432 15689999988653 3
Q ss_pred ccchHHHH----hcCCCEEEEccCCcccccHHHHHHHHHHcCCcEEEEEc
Q 025927 128 EQRVPDFI----KAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLN 173 (246)
Q Consensus 128 ~~~i~~~~----~agad~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAln 173 (246)
+.|++.+. ..++|+|-+-++. ......++++.+++.|.|+=+...
T Consensus 78 ~~~~~ll~~~~~~~~~d~vDiEl~~-~~~~~~~l~~~~~~~~~kvI~S~H 126 (228)
T TIGR01093 78 EEYLEELKRAADSPGPDFVDIELFL-PDDAVKELINIAKKGGTKIIMSYH 126 (228)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEccC-CHHHHHHHHHHHHHCCCEEEEecc
Confidence 45666553 3468999987764 123455667777888888777764
No 267
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=83.44 E-value=34 Score=31.79 Aligned_cols=150 Identities=14% Similarity=0.148 Sum_probs=0.0
Q ss_pred cChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCc---ccchHHHHhcCCCEEE
Q 025927 67 ANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEP---EQRVPDFIKAGADIVS 143 (246)
Q Consensus 67 aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P---~~~i~~~~~agad~It 143 (246)
.+...+.+-++++.+.|+..+++ .--.-.+-+++.+-++......+.+.|.+.-- +.+++.+.++|.+.|.
T Consensus 37 l~~e~~~~ii~~~~~~g~~~v~~------~GGEPll~~~~~~ii~~~~~~g~~~~l~TNG~ll~~e~~~~L~~~g~~~v~ 110 (358)
T TIGR02109 37 LTTEEWTDVLTQAAELGVLQLHF------SGGEPLARPDLVELVAHARRLGLYTNLITSGVGLTEARLDALADAGLDHVQ 110 (358)
T ss_pred CCHHHHHHHHHHHHhcCCcEEEE------eCccccccccHHHHHHHHHHcCCeEEEEeCCccCCHHHHHHHHhCCCCEEE
Q ss_pred EccCCc-------------ccccHHHHHHHHHHcCCcEEE-EEcCCCChHHHHHhhhh-----cceEEEEeecC-CCCCC
Q 025927 144 VHCEQS-------------STIHLHRTLNQIKDLGAKAGV-VLNPATSLSAIECVLDV-----VDLVLIMSVNP-GFGGQ 203 (246)
Q Consensus 144 ~H~E~~-------------~~~~~~~~i~~Ik~~G~k~Gl-AlnP~Tpve~l~~~l~~-----vD~VLvMsV~P-GfgGQ 203 (246)
+-++.. +.+...+.++.+++.|+++++ ..-....++.++++++. ++.+.+..+.| |++..
T Consensus 111 iSldg~~~e~~d~~rg~~g~f~~v~~~i~~l~~~g~~v~v~~vv~~~N~~~l~~~~~~~~~lg~~~i~~~~~~~~g~~~~ 190 (358)
T TIGR02109 111 LSFQGVDEALADRIAGYKNAFEQKLAMARAVKAAGLPLTLNFVIHRHNIDQIPEIIELAIELGADRVELATTQYYGWALL 190 (358)
T ss_pred EeCcCCCHHHHHHhcCCccHHHHHHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHHHHHcCCCEEEEEeeeccCchhc
Q ss_pred cc--cHHHHHHHHHHHHHHHh
Q 025927 204 SF--IESQVKKISDLRRMCLE 222 (246)
Q Consensus 204 ~F--~~~~l~KI~~lr~l~~~ 222 (246)
.- .....+.++++.++..+
T Consensus 191 ~~~~~~p~~~~~~~~~~~~~~ 211 (358)
T TIGR02109 191 NRAALMPTRAQLEEATRIVEE 211 (358)
T ss_pred chhhcCCCHHHHHHHHHHHHH
No 268
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=83.40 E-value=30 Score=31.43 Aligned_cols=163 Identities=16% Similarity=0.147 Sum_probs=93.6
Q ss_pred eeecccChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcc-----cchHHHHh
Q 025927 62 PSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPE-----QRVPDFIK 136 (246)
Q Consensus 62 PSIl~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~-----~~i~~~~~ 136 (246)
|--=..+..++.+.++.|.+.|.|++ .|.||.--..-.=.-...+.|++.++++.-.||-+.+-. .++..+.+
T Consensus 7 PP~~~~~~~~l~~~~~~l~~~~pd~i--svT~~~~~~~~~~t~~~a~~l~~~~g~~~i~Hlt~r~~n~~~l~~~L~~~~~ 84 (272)
T TIGR00676 7 PPKTDEGEENLWETVDRLSPLDPDFV--SVTYGAGGSTRDRTVRIVRRIKKETGIPTVPHLTCIGATREEIREILREYRE 84 (272)
T ss_pred CcCCchhHHHHHHHHHHHhcCCCCEE--EeccCCCCCcHHHHHHHHHHHHHhcCCCeeEEeeecCCCHHHHHHHHHHHHH
Confidence 33333446788888999988888875 456654422111123345666766689999999887633 24555677
Q ss_pred cCCCEEEE----cc-----CC-cccccHHHHHHHHHHc--CCcEEEEEcCCC-----Ch-HHHHHhhhhcce-EEEEeec
Q 025927 137 AGADIVSV----HC-----EQ-SSTIHLHRTLNQIKDL--GAKAGVVLNPAT-----SL-SAIECVLDVVDL-VLIMSVN 197 (246)
Q Consensus 137 agad~It~----H~-----E~-~~~~~~~~~i~~Ik~~--G~k~GlAlnP~T-----pv-e~l~~~l~~vD~-VLvMsV~ 197 (246)
+|++.|-. +. +. ....+...+++.||+. .+.+|+|.+|+. +. +.++.+..++|. .-..-.+
T Consensus 85 ~Gi~nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~f~iTQ 164 (272)
T TIGR00676 85 LGIRHILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGADYAITQ 164 (272)
T ss_pred CCCCEEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeec
Confidence 78775542 11 11 0123566788888875 589999998872 23 345556666653 2233344
Q ss_pred CCCCCCcccHHHHHHHHHHHHHHHhcCCCCeEEEeCCCC
Q 025927 198 PGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG 236 (246)
Q Consensus 198 PGfgGQ~F~~~~l~KI~~lr~l~~~~~~~~~I~VDGGI~ 236 (246)
|.| ..+.+. ++.+.+.+.|.+. -|--||-
T Consensus 165 ~~f-----d~~~~~---~~~~~~~~~gi~~--PIi~Gi~ 193 (272)
T TIGR00676 165 LFF-----DNDDYY---RFVDRCRAAGIDV--PIIPGIM 193 (272)
T ss_pred ccc-----CHHHHH---HHHHHHHHcCCCC--CEecccC
Confidence 544 444443 3334444555443 3444553
No 269
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=83.39 E-value=9 Score=36.95 Aligned_cols=118 Identities=17% Similarity=0.268 Sum_probs=67.2
Q ss_pred EEEeccCcccchHHHH--hcCCCEEEE--ccCCcccccHHHHHHHHHHcC--CcEEEEEcCCCChHHHHHhh--hhcceE
Q 025927 120 VHLMIVEPEQRVPDFI--KAGADIVSV--HCEQSSTIHLHRTLNQIKDLG--AKAGVVLNPATSLSAIECVL--DVVDLV 191 (246)
Q Consensus 120 vHLMV~~P~~~i~~~~--~agad~It~--H~E~~~~~~~~~~i~~Ik~~G--~k~GlAlnP~Tpve~l~~~l--~~vD~V 191 (246)
=||.-..-...|..+. ..|.+.++- |.+..+.+++...|+++|+.+ ..+|+=+.....++.+.... ..+|+|
T Consensus 152 G~Lp~~KV~~~ia~~R~~~~g~~~iSP~~h~di~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~~~~~~~~~~~~ag~D~I 231 (368)
T PF01645_consen 152 GHLPGEKVTEEIARIRGVPPGVDLISPPPHHDIYSIEDLAQLIEELRELNPGKPVGVKLVAGRGVEDIAAGAAKAGADFI 231 (368)
T ss_dssp -EE-GGG--HHHHHHHTS-TT--EE--SS-TT-SSHHHHHHHHHHHHHH-TTSEEEEEEE-STTHHHHHHHHHHTT-SEE
T ss_pred ceechhhchHHHHHHhCCCCCCccccCCCCCCcCCHHHHHHHHHHHHhhCCCCcEEEEECCCCcHHHHHHhhhhccCCEE
Confidence 4676666555555443 347777774 344334567888899999876 88999999999998887743 358999
Q ss_pred EEEeecCCCCCCc--ccHH----HHHHHHHHHHHHHhcCCC--CeEEEeCCCCh
Q 025927 192 LIMSVNPGFGGQS--FIES----QVKKISDLRRMCLEKGVN--PWIEVDGGVGP 237 (246)
Q Consensus 192 LvMsV~PGfgGQ~--F~~~----~l~KI~~lr~l~~~~~~~--~~I~VDGGI~~ 237 (246)
+|=.-+=|-|..+ ++.. +..-+.++++.+.++|+. +.+.+|||+..
T Consensus 232 tIDG~~GGTGAap~~~~d~~GlP~~~~l~~a~~~L~~~glr~~V~Li~sGgl~t 285 (368)
T PF01645_consen 232 TIDGAEGGTGAAPLTSMDHVGLPTEYALARAHQALVKNGLRDRVSLIASGGLRT 285 (368)
T ss_dssp EEE-TT---SSEECCHHHHC---HHHHHHHHHHHHHCTT-CCCSEEEEESS--S
T ss_pred EEeCCCCCCCCCchhHHhhCCCcHHHHHHHHHHHHHHcCCCCceEEEEeCCccC
Confidence 8876554443332 2222 244467778888777764 67999999964
No 270
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=83.32 E-value=5.3 Score=35.06 Aligned_cols=84 Identities=27% Similarity=0.252 Sum_probs=52.8
Q ss_pred cEEee-eecc--cChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCC-CCeeEEEeccCcccchHH
Q 025927 58 IIVSP-SILS--ANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTD-LPLDVHLMIVEPEQRVPD 133 (246)
Q Consensus 58 ~~IsP-SIl~--aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~-~plDvHLMV~~P~~~i~~ 133 (246)
+.++. .... .++..+.+.++.+.+.|++++-+==+.|...|+-. .+.++.+++..+ .++.+|.=-..=......
T Consensus 131 v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v--~~li~~l~~~~~~~~~~~H~Hn~~gla~an~ 208 (265)
T cd03174 131 VEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLKDTVGLATPEEV--AELVKALREALPDVPLGLHTHNTLGLAVANS 208 (265)
T ss_pred EEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEechhcCCcCHHHH--HHHHHHHHHhCCCCeEEEEeCCCCChHHHHH
Confidence 44444 2344 77888888899999999999886555666555421 123555566544 888888855443333333
Q ss_pred H--HhcCCCEEE
Q 025927 134 F--IKAGADIVS 143 (246)
Q Consensus 134 ~--~~agad~It 143 (246)
+ +++|+++|-
T Consensus 209 laA~~aG~~~id 220 (265)
T cd03174 209 LAALEAGADRVD 220 (265)
T ss_pred HHHHHcCCCEEE
Confidence 2 467888764
No 271
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=83.02 E-value=4.5 Score=42.07 Aligned_cols=158 Identities=19% Similarity=0.145 Sum_probs=99.3
Q ss_pred hhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEEEccCCc
Q 025927 70 AKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS 149 (246)
Q Consensus 70 ~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It~H~E~~ 149 (246)
.+..+..+..+++|++.|=+ ..|.+| |.-+.+.++.+|+.+++|+-..=-+-+|.+.. .-..+|||.|-+-+..+
T Consensus 70 ~d~~~~a~~y~~~GA~aiSV-lTe~~~---F~Gs~~~l~~vr~~v~~PvLrKDFIid~~QI~-ea~~~GADavLLI~~~L 144 (695)
T PRK13802 70 PDPAALAREYEQGGASAISV-LTEGRR---FLGSLDDFDKVRAAVHIPVLRKDFIVTDYQIW-EARAHGADLVLLIVAAL 144 (695)
T ss_pred CCHHHHHHHHHHcCCcEEEE-ecCcCc---CCCCHHHHHHHHHhCCCCEEeccccCCHHHHH-HHHHcCCCEeehhHhhc
Confidence 36667777889999998877 556665 55677899999998888865555555666544 33567999999998875
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhh-hcceEEEEeecCCCCCCcccHHHHHHHHHHHHHHHhcCCCCe
Q 025927 150 STIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPW 228 (246)
Q Consensus 150 ~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~-~vD~VLvMsV~PGfgGQ~F~~~~l~KI~~lr~l~~~~~~~~~ 228 (246)
...++.+++++.++.|+.+=|=+.- .++++..++ ..++|=|=..+- ..-.-. +++-.+|+.++++ +..
T Consensus 145 ~~~~l~~l~~~a~~lGme~LvEvh~---~~el~~a~~~ga~iiGINnRdL--~tf~vd---~~~t~~L~~~ip~---~~~ 213 (695)
T PRK13802 145 DDAQLKHLLDLAHELGMTVLVETHT---REEIERAIAAGAKVIGINARNL--KDLKVD---VNKYNELAADLPD---DVI 213 (695)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEeCC---HHHHHHHHhCCCCEEEEeCCCC--ccceeC---HHHHHHHHhhCCC---CcE
Confidence 4457899999999999998777663 344444443 344433322221 111222 3333444555543 233
Q ss_pred EEEeCCCC-hhhhhhc
Q 025927 229 IEVDGGVG-PKNAYKV 243 (246)
Q Consensus 229 I~VDGGI~-~e~i~~l 243 (246)
+-.-+||+ .+.+..+
T Consensus 214 ~VsESGI~~~~d~~~l 229 (695)
T PRK13802 214 KVAESGVFGAVEVEDY 229 (695)
T ss_pred EEEcCCCCCHHHHHHH
Confidence 44467775 3444433
No 272
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=82.80 E-value=3.1 Score=36.61 Aligned_cols=157 Identities=19% Similarity=0.215 Sum_probs=91.5
Q ss_pred cEEeeeecccChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccC-CCCCeeEEEeccCcccchHHHHh
Q 025927 58 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIK 136 (246)
Q Consensus 58 ~~IsPSIl~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~-t~~plDvHLMV~~P~~~i~~~~~ 136 (246)
..+-|-+-..|.....+.++.|.+.|+..+-+=... .-..+.|+.+++. .++-+=+. -|.+++ .++..++
T Consensus 8 ~~iiaVir~~~~~~a~~~~~al~~gGi~~iEiT~~t-------~~a~~~I~~l~~~~p~~~vGAG-TV~~~e-~a~~a~~ 78 (196)
T PF01081_consen 8 NKIIAVIRGDDPEDAVPIAEALIEGGIRAIEITLRT-------PNALEAIEALRKEFPDLLVGAG-TVLTAE-QAEAAIA 78 (196)
T ss_dssp HSEEEEETTSSGGGHHHHHHHHHHTT--EEEEETTS-------TTHHHHHHHHHHHHTTSEEEEE-S--SHH-HHHHHHH
T ss_pred CCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEecCC-------ccHHHHHHHHHHHCCCCeeEEE-eccCHH-HHHHHHH
Confidence 346677778888899999999999999987664432 2345777777663 33222221 233444 4678899
Q ss_pred cCCCEEEEccCCcccccHHHHHHHHHHcCCcEEEEEcC--CCChHHHHHhhhhcceEEEEeecCCCCCCcccHHHHHHHH
Q 025927 137 AGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNP--ATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKIS 214 (246)
Q Consensus 137 agad~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP--~Tpve~l~~~l~~vD~VLvMsV~PGfgGQ~F~~~~l~KI~ 214 (246)
+||+++.-+.= -.+++++.+++|+-. -| -||-|...-+-.-+|.|=+--... +||-+| |+
T Consensus 79 aGA~FivSP~~------~~~v~~~~~~~~i~~----iPG~~TptEi~~A~~~G~~~vK~FPA~~-~GG~~~-------ik 140 (196)
T PF01081_consen 79 AGAQFIVSPGF------DPEVIEYAREYGIPY----IPGVMTPTEIMQALEAGADIVKLFPAGA-LGGPSY-------IK 140 (196)
T ss_dssp HT-SEEEESS--------HHHHHHHHHHTSEE----EEEESSHHHHHHHHHTT-SEEEETTTTT-TTHHHH-------HH
T ss_pred cCCCEEECCCC------CHHHHHHHHHcCCcc----cCCcCCHHHHHHHHHCCCCEEEEecchh-cCcHHH-------HH
Confidence 99997765421 135788888877543 33 366666655544567665542211 333333 44
Q ss_pred HHHHHHHhcCCCCeEEEeCCCChhhhhhccc
Q 025927 215 DLRRMCLEKGVNPWIEVDGGVGPKNAYKVPN 245 (246)
Q Consensus 215 ~lr~l~~~~~~~~~I~VDGGI~~e~i~~l~~ 245 (246)
.|+.-++ +..+..=|||+.+|+++..+
T Consensus 141 ~l~~p~p----~~~~~ptGGV~~~N~~~~l~ 167 (196)
T PF01081_consen 141 ALRGPFP----DLPFMPTGGVNPDNLAEYLK 167 (196)
T ss_dssp HHHTTTT----T-EEEEBSS--TTTHHHHHT
T ss_pred HHhccCC----CCeEEEcCCCCHHHHHHHHh
Confidence 4444443 36788999999999987643
No 273
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=82.74 E-value=8.1 Score=38.15 Aligned_cols=158 Identities=14% Similarity=0.085 Sum_probs=91.4
Q ss_pred HHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEEEccCCccccc
Q 025927 74 EQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIH 153 (246)
Q Consensus 74 ~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It~H~E~~~~~~ 153 (246)
+.++++.++|++++++=.-|-.-- .+ -..++.+++.+. ..++-|.+.+ +++.-.+.|++-|.+=.|..
T Consensus 221 ~~ve~aL~aGv~~VQLReK~ls~~---el-~~la~~l~~l~~-~~gv~LiIND---~~dlAl~~gAdGVHLGQeDL---- 288 (437)
T PRK12290 221 EWIERLLPLGINTVQLRIKDPQQA---DL-EQQIIRAIALGR-EYNAQVFIND---YWQLAIKHQAYGVHLGQEDL---- 288 (437)
T ss_pred HHHHHHHhCCCCEEEEeCCCCCHH---HH-HHHHHHHHHHHH-HhCCEEEEEC---HHHHHHHcCCCEEEcChHHc----
Confidence 458888899999999976653210 00 112233333221 2356677776 35555678999776655521
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhhhcceEEEEeecCCCCCC-cccHHHHHHHHHHHHHHHh----cCCCCe
Q 025927 154 LHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQ-SFIESQVKKISDLRRMCLE----KGVNPW 228 (246)
Q Consensus 154 ~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~~vD~VLvMsV~PGfgGQ-~F~~~~l~KI~~lr~l~~~----~~~~~~ 228 (246)
.....+.+...|...|+.-+ +.-|..+-.-..+|+|.+=.|-|=-.=+ ...|.-++++++++++.+. ...++-
T Consensus 289 ~~~~aR~ilg~~~iIGvStH--s~eEl~~A~~~gaDYI~lGPIFpT~TK~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iP 366 (437)
T PRK12290 289 EEANLAQLTDAGIRLGLSTH--GYYELLRIVQIQPSYIALGHIFPTTTKQMPSKPQGLVRLALYQKLIDTIPYQGQTGFP 366 (437)
T ss_pred chhhhhhhcCCCCEEEEecC--CHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHHhhhccccccCCCC
Confidence 11223344445667777653 3333333333468999886665532222 3445567777777776542 112355
Q ss_pred EEEeCCCChhhhhhccc
Q 025927 229 IEVDGGVGPKNAYKVPN 245 (246)
Q Consensus 229 I~VDGGI~~e~i~~l~~ 245 (246)
+..=|||+.+|+.++.+
T Consensus 367 VVAIGGI~~~Ni~~vl~ 383 (437)
T PRK12290 367 TVAIGGIDQSNAEQVWQ 383 (437)
T ss_pred EEEECCcCHHHHHHHHH
Confidence 77789999999998754
No 274
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=82.56 E-value=3.1 Score=38.81 Aligned_cols=105 Identities=16% Similarity=0.233 Sum_probs=67.8
Q ss_pred HHHHHHH---HHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEec--cCcccchHHHHhcCCCEEEEcc
Q 025927 72 LGEQVKA---VELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMI--VEPEQRVPDFIKAGADIVSVHC 146 (246)
Q Consensus 72 l~~~i~~---l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV--~~P~~~i~~~~~agad~It~H~ 146 (246)
+++.|++ ..++|+|.+ |+|.. -.++.++.+.+..+.|+-+-++. ..|..-++.|.+.|.++|+++.
T Consensus 164 ~deaI~Ra~aY~eAGAD~i--------fi~~~-~~~~ei~~~~~~~~~P~~~nv~~~~~~p~~s~~eL~~lG~~~v~~~~ 234 (294)
T TIGR02319 164 LDEAIRRSREYVAAGADCI--------FLEAM-LDVEEMKRVRDEIDAPLLANMVEGGKTPWLTTKELESIGYNLAIYPL 234 (294)
T ss_pred HHHHHHHHHHHHHhCCCEE--------EecCC-CCHHHHHHHHHhcCCCeeEEEEecCCCCCCCHHHHHHcCCcEEEEcH
Confidence 4555544 457898765 66652 35778888877666777333333 3566678999999999999997
Q ss_pred CCc--ccccHHHHHHHHHHcCCcEEEEEcCC--CChHHHHHhh
Q 025927 147 EQS--STIHLHRTLNQIKDLGAKAGVVLNPA--TSLSAIECVL 185 (246)
Q Consensus 147 E~~--~~~~~~~~i~~Ik~~G~k~GlAlnP~--Tpve~l~~~l 185 (246)
-.. ....+.+.+..+++.|...+..=..+ .+..++.+++
T Consensus 235 ~~~~aa~~a~~~~~~~l~~~G~~~~~~~~~~~~~~~~e~~~~~ 277 (294)
T TIGR02319 235 SGWMAAASVLRKLFTELREAGTTQKFWDDMGLKMSFAELFEVF 277 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcccccccccccCCHHHHHHHh
Confidence 532 12346788888998887554211111 4566666654
No 275
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=82.46 E-value=31 Score=31.27 Aligned_cols=96 Identities=24% Similarity=0.307 Sum_probs=55.6
Q ss_pred cChhhHHHHHHHHHHcCCCEEEeeeccCc-c-cCCC-CCCH--------HHHhhcccCCCCCeeEEEeccCcccchHHHH
Q 025927 67 ANFAKLGEQVKAVELAGCDWIHVDVMDGR-F-VPNI-TIGP--------LVVDALRPVTDLPLDVHLMIVEPEQRVPDFI 135 (246)
Q Consensus 67 aD~~~l~~~i~~l~~~g~d~lHiDIMDG~-F-VpN~-tfgp--------~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~ 135 (246)
.+.....+..++..++|+++|=+ |- . -|+. .+.+ +.++.+++.++.|+-+| +.+|+. ++.-.
T Consensus 20 ~~~~~~~~~a~~~~~~GA~iIDI----G~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~plsiD--T~~~~v-i~~al 92 (257)
T TIGR01496 20 LSVDKAVAHAERMLEEGADIIDV----GGESTRPGADRVSPEEELNRVVPVIKALRDQPDVPISVD--TYRAEV-ARAAL 92 (257)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEE----CCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEe--CCCHHH-HHHHH
Confidence 45566778888888999999755 31 1 1322 1222 23455555556665444 345554 44556
Q ss_pred hcCCCEEEEccCCcccccHHHHHHHHHHcCCcEEEEEc
Q 025927 136 KAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLN 173 (246)
Q Consensus 136 ~agad~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAln 173 (246)
++|+++| -|.... . ..+++..+++.|+.+-+.-+
T Consensus 93 ~~G~~iI-Nsis~~--~-~~~~~~l~~~~~~~vV~m~~ 126 (257)
T TIGR01496 93 EAGADII-NDVSGG--Q-DPAMLEVAAEYGVPLVLMHM 126 (257)
T ss_pred HcCCCEE-EECCCC--C-CchhHHHHHHcCCcEEEEeC
Confidence 6799865 344421 1 23567778888877766444
No 276
>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=82.39 E-value=1.5 Score=42.68 Aligned_cols=166 Identities=17% Similarity=0.210 Sum_probs=100.1
Q ss_pred cceeccccCCCCCCceeccccceeeeeeccccccCCCCCcEEeeeecccChhhHHHHHHHHHHcCCCEEEeeeccCcccC
Q 025927 19 GFMLQKTNLNQPSSLSFTRRRIQTIVKASARVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVP 98 (246)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IsPSIl~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVp 98 (246)
++.-.+-.+..|+-..+ +.|++.+..|-.|..+-......-+|-|- +|...+.+..+.+.+.|++.+.+|++
T Consensus 174 D~IKDDE~l~~q~~~p~-~eRv~~~~~a~~~a~~eTG~~~~y~~NiT-~~~~em~~ra~~~~~~G~~~~mv~~~------ 245 (406)
T cd08207 174 DFIKDDELLANPPYSPL-DERVRAVMRVINDHAQRTGRKVMYAFNIT-DDIDEMRRNHDLVVEAGGTCVMVSLN------ 245 (406)
T ss_pred CcccccccCCCCCCCcH-HHHHHHHHHHHHHHHHhhCCcceEEEecC-CCHHHHHHHHHHHHHhCCCeEEEecc------
Confidence 55555556655544333 44555566655555544443555666665 77999999999999999999999875
Q ss_pred CCCCCHHHHhhcccCCCCCeeEE-----EeccCcc------cchHHHHhcCCCEEEEccCCc----ccccHHHHHHHHHH
Q 025927 99 NITIGPLVVDALRPVTDLPLDVH-----LMIVEPE------QRVPDFIKAGADIVSVHCEQS----STIHLHRTLNQIKD 163 (246)
Q Consensus 99 N~tfgp~~I~~ir~~t~~plDvH-----LMV~~P~------~~i~~~~~agad~It~H~E~~----~~~~~~~~i~~Ik~ 163 (246)
+.|...+..+|+.+++|+..| .|...|. -|-+.+.-+|+|.+.+.-=.. +.++..++.+.+++
T Consensus 246 --~~G~~~l~~l~~~~~l~IhaHra~~ga~~r~p~~Gis~~vl~kl~RLaGaD~~~~~~~~Gkf~~~~~~~~~~~~~~~~ 323 (406)
T cd08207 246 --SVGLSGLAALRRHSQLPIHGHRNGWGMLTRSPALGISFQAYQKLWRLAGVDHLHVNGLASKFWESDDSVIESARACLT 323 (406)
T ss_pred --ccchHHHHHHHhcCCceEEECCCcceecccCCCCCCcHHHHHHHHHHcCCCccccCCCcCCcCCCcHHHHHHHHHHhC
Confidence 456678999998889999988 4555564 233344558999988852110 12223344444443
Q ss_pred c--C-Cc-EEEEEcCCCChHHHHHhhhh---cceEEEE
Q 025927 164 L--G-AK-AGVVLNPATSLSAIECVLDV---VDLVLIM 194 (246)
Q Consensus 164 ~--G-~k-~GlAlnP~Tpve~l~~~l~~---vD~VLvM 194 (246)
- + +| +-=+.+-+.....+.++++. .|.|+..
T Consensus 324 p~~~~~k~~~Pv~sgG~~~~~vp~~~~~~G~~Dvi~~a 361 (406)
T cd08207 324 PLGGPDDAAMPVFSSGQWGGQAPPTYRRLGSVDLLYLA 361 (406)
T ss_pred chhccCCCeeEeccCCCCHhHHHHHHHHhCCCceEEec
Confidence 1 2 22 22233334444555555443 4666653
No 277
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=82.15 E-value=4.2 Score=37.85 Aligned_cols=78 Identities=12% Similarity=0.204 Sum_probs=51.1
Q ss_pred cHHHHHHHHHHc---CCcEEEEEcCCCChHHHHHhhh-hcceEEEEeecCCCCCCcccHHHHHHHHHHHHHHHhcCCCCe
Q 025927 153 HLHRTLNQIKDL---GAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPW 228 (246)
Q Consensus 153 ~~~~~i~~Ik~~---G~k~GlAlnP~Tpve~l~~~l~-~vD~VLvMsV~PGfgGQ~F~~~~l~KI~~lr~l~~~~~~~~~ 228 (246)
.+.+.++.+|+. +.++++-.. .++++...++ .+|+|++= +|.++.++++-+ ++++.+.+..
T Consensus 181 ~i~~av~~~r~~~~~~~~I~VEv~---tleea~eA~~~GaD~I~LD---------n~~~e~l~~av~---~~~~~~~~i~ 245 (288)
T PRK07428 181 GIGEAITRIRQRIPYPLTIEVETE---TLEQVQEALEYGADIIMLD---------NMPVDLMQQAVQ---LIRQQNPRVK 245 (288)
T ss_pred CHHHHHHHHHHhCCCCCEEEEECC---CHHHHHHHHHcCCCEEEEC---------CCCHHHHHHHHH---HHHhcCCCeE
Confidence 366777888874 345555433 4555555554 48998774 666676766443 3333344578
Q ss_pred EEEeCCCChhhhhhccc
Q 025927 229 IEVDGGVGPKNAYKVPN 245 (246)
Q Consensus 229 I~VDGGI~~e~i~~l~~ 245 (246)
+++=||||.+|++++.+
T Consensus 246 leAsGGIt~~ni~~ya~ 262 (288)
T PRK07428 246 IEASGNITLETIRAVAE 262 (288)
T ss_pred EEEECCCCHHHHHHHHH
Confidence 99999999999998764
No 278
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=82.13 E-value=5.8 Score=36.97 Aligned_cols=80 Identities=16% Similarity=0.196 Sum_probs=50.6
Q ss_pred cHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhhh-cceEEEEeecCCCCCCcccHHHHHHHHHHHHHHHhcCCCCeEEE
Q 025927 153 HLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV 231 (246)
Q Consensus 153 ~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~~-vD~VLvMsV~PGfgGQ~F~~~~l~KI~~lr~l~~~~~~~~~I~V 231 (246)
.+.+.+++.|+.--..-+.+-.+| +++.++.++. +|.|++= +|.|+.+++. -+++++.+.+..|++
T Consensus 185 ~i~~ai~~~r~~~~~~kIeVEv~t-l~ea~eal~~gaDiI~LD---------nm~~e~vk~a---v~~~~~~~~~v~iea 251 (289)
T PRK07896 185 SVVAALRAVRAAAPDLPCEVEVDS-LEQLDEVLAEGAELVLLD---------NFPVWQTQEA---VQRRDARAPTVLLES 251 (289)
T ss_pred cHHHHHHHHHHhCCCCCEEEEcCC-HHHHHHHHHcCCCEEEeC---------CCCHHHHHHH---HHHHhccCCCEEEEE
Confidence 456677777764211115555444 4455565654 8998874 4555555443 334444455678999
Q ss_pred eCCCChhhhhhccc
Q 025927 232 DGGVGPKNAYKVPN 245 (246)
Q Consensus 232 DGGI~~e~i~~l~~ 245 (246)
=||||.+|++++++
T Consensus 252 SGGI~~~ni~~yA~ 265 (289)
T PRK07896 252 SGGLTLDTAAAYAE 265 (289)
T ss_pred ECCCCHHHHHHHHh
Confidence 99999999998754
No 279
>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=81.90 E-value=3.1 Score=37.05 Aligned_cols=165 Identities=18% Similarity=0.271 Sum_probs=83.9
Q ss_pred ecccChhhHHHHHHHHHHcCCCEEEeeecc-CcccCCCCCCHHHHhhcccC-CC--CCeeEEEeccCcccchHHHHhcCC
Q 025927 64 ILSANFAKLGEQVKAVELAGCDWIHVDVMD-GRFVPNITIGPLVVDALRPV-TD--LPLDVHLMIVEPEQRVPDFIKAGA 139 (246)
Q Consensus 64 Il~aD~~~l~~~i~~l~~~g~d~lHiDIMD-G~FVpN~tfgp~~I~~ir~~-t~--~plDvHLMV~~P~~~i~~~~~aga 139 (246)
+++.|..++++.++.+++.+ + |+|+-- | .---+..|++.|++|++. .+ +.+|.=++ .-|....+...++|+
T Consensus 7 ivALD~~~~~~A~~l~~~l~-~--~v~~iKVG-~~L~~~~G~~~i~~lk~~~~~~~IflDlKl~-DIp~tv~~~~~~~Ga 81 (218)
T PRK13305 7 QLALDHTSLEAAQRDVTLLK-D--HVDIVEAG-TILCLNEGLGAVKALREQCPDKIIVADWKVA-DAGETLAQQAFGAGA 81 (218)
T ss_pred EEEeCCCCHHHHHHHHHHcc-c--cCCEEEEC-HHHHHHhCHHHHHHHHHhCCCCEEEEEeecc-cChHHHHHHHHHcCC
Confidence 45679999988887777652 2 222211 1 000147799999999885 34 45555443 244444556678999
Q ss_pred CEEEEccCCcccccHHHHHHHHHHcCCc-----EEEEEcCCCChHHHHHhhhhcceEEEEeecCCCCCCcccHHHHHHHH
Q 025927 140 DIVSVHCEQSSTIHLHRTLNQIKDLGAK-----AGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKIS 214 (246)
Q Consensus 140 d~It~H~E~~~~~~~~~~i~~Ik~~G~k-----~GlAlnP~Tpve~l~~~l~~vD~VLvMsV~PGfgGQ~F~~~~l~KI~ 214 (246)
|.+|+|.-+ ...-+....+..++.|.+ .|+ -.....+++.++ ..-++|+-.+..---.|.-.-+.-+ .
T Consensus 82 d~~tv~~~~-g~~~i~~a~~~a~~~~~~~~~~llgV--~t~~~~~~l~~~-g~~~~v~h~a~~a~~~G~v~s~~e~---~ 154 (218)
T PRK13305 82 NWMTIICAA-PLATVEKGHAVAQRCGGEIQIELFGN--WTLDDARDWHRI-GVRQAIYHRGRDAQASGQQWGEADL---A 154 (218)
T ss_pred CEEEEecCC-CHHHHHHHHHHHHhcCCcccceEEEe--cCcchHHHHHHc-CCHHHHHHHHHHHHHhCCCCCHHHH---H
Confidence 999999753 112222333323333432 233 111122333322 1112222222222123332233333 3
Q ss_pred HHHHHHHhcCCCCeEEEeCCCChhhhhhc
Q 025927 215 DLRRMCLEKGVNPWIEVDGGVGPKNAYKV 243 (246)
Q Consensus 215 ~lr~l~~~~~~~~~I~VDGGI~~e~i~~l 243 (246)
.+|+.. +.++.+-|=|||++++.+..
T Consensus 155 ~ir~~~---~~~~~i~VtpGIr~~~~~~~ 180 (218)
T PRK13305 155 RMKALS---DIGLELSITGGITPADLPLF 180 (218)
T ss_pred HHHHHh---CCCCcEEEeCCcCccccccc
Confidence 334443 33577889999999887654
No 280
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=81.90 E-value=29 Score=31.55 Aligned_cols=147 Identities=16% Similarity=0.181 Sum_probs=89.2
Q ss_pred HHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEEE-ccCCccccc
Q 025927 75 QVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSV-HCEQSSTIH 153 (246)
Q Consensus 75 ~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It~-H~E~~~~~~ 153 (246)
..+.+-.+|.||+=+|.-=|.|-.. ++ ...+.+++. ++.+.-|=+=..+| .++....++|++.|.+ |+|+ .++
T Consensus 32 ~~e~~a~~G~D~v~iD~EHg~~~~~-~~-~~~i~a~~~-~g~~~lVRvp~~~~-~~i~r~LD~Ga~giivP~v~t--ae~ 105 (256)
T PRK10558 32 TTEVLGLAGFDWLVLDGEHAPNDVS-TF-IPQLMALKG-SASAPVVRVPTNEP-VIIKRLLDIGFYNFLIPFVET--AEE 105 (256)
T ss_pred HHHHHHhcCCCEEEEccccCCCCHH-HH-HHHHHHHhh-cCCCcEEECCCCCH-HHHHHHhCCCCCeeeecCcCC--HHH
Confidence 3455678899999999998876322 11 122333332 33332333322333 4677788999986655 5664 345
Q ss_pred HHHHHH--------------------------HHHHcCCcEEEEEcCCCCh--HHHHHhhh--hcceEEE----EeecCC
Q 025927 154 LHRTLN--------------------------QIKDLGAKAGVVLNPATSL--SAIECVLD--VVDLVLI----MSVNPG 199 (246)
Q Consensus 154 ~~~~i~--------------------------~Ik~~G~k~GlAlnP~Tpv--e~l~~~l~--~vD~VLv----MsV~PG 199 (246)
..++.+ +++..+-...+...-+|+- +.+++++. .+|.|.+ ++..=|
T Consensus 106 a~~~v~a~kypP~G~Rg~~~~~~~~~y~~~~~y~~~an~~~~vi~~IEt~~av~ni~eI~av~gvd~l~iG~~DLs~slG 185 (256)
T PRK10558 106 ARRAVASTRYPPEGIRGVSVSHRANMFGTVPDYFAQSNKNITVLVQIESQQGVDNVDAIAATEGVDGIFVGPSDLAAALG 185 (256)
T ss_pred HHHHHHHcCCCCCCcCCCCccccccccCChHHHHHHhccccEEEEEECCHHHHHHHHHHhCCCCCcEEEECHHHHHHHcC
Confidence 555543 3333333444555556554 77777764 4777766 344446
Q ss_pred CCCCcccHHHHHHHHHHHHHHHhcCCCC
Q 025927 200 FGGQSFIESQVKKISDLRRMCLEKGVNP 227 (246)
Q Consensus 200 fgGQ~F~~~~l~KI~~lr~l~~~~~~~~ 227 (246)
..|+...|++.+-++++.+...++|...
T Consensus 186 ~~~~~~~~~v~~a~~~v~~aa~~~G~~~ 213 (256)
T PRK10558 186 HLGNASHPDVQKAIQHIFARAKAHGKPS 213 (256)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCce
Confidence 7777788899998888888888887654
No 281
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=81.80 E-value=28 Score=30.12 Aligned_cols=118 Identities=14% Similarity=0.058 Sum_probs=68.5
Q ss_pred HHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEEEccCCc---
Q 025927 73 GEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS--- 149 (246)
Q Consensus 73 ~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It~H~E~~--- 149 (246)
.++++.+.++|+|.+=+|.-... .|.-..-.++++.+++..++++-+ -+.++ ..+....++|+|++.++.-..
T Consensus 78 ~~~v~~a~~aGad~I~~d~~~~~-~p~~~~~~~~i~~~~~~~~i~vi~--~v~t~-ee~~~a~~~G~d~i~~~~~g~t~~ 153 (221)
T PRK01130 78 LKEVDALAAAGADIIALDATLRP-RPDGETLAELVKRIKEYPGQLLMA--DCSTL-EEGLAAQKLGFDFIGTTLSGYTEE 153 (221)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCC-CCCCCCHHHHHHHHHhCCCCeEEE--eCCCH-HHHHHHHHcCCCEEEcCCceeecC
Confidence 46789999999998888764431 232122246788887642333221 22233 446778889999997642100
Q ss_pred ---ccccHHHHHHHHHHc-CCcEEEEEcCCCChHHHHHhhhh-cceEEEEe
Q 025927 150 ---STIHLHRTLNQIKDL-GAKAGVVLNPATSLSAIECVLDV-VDLVLIMS 195 (246)
Q Consensus 150 ---~~~~~~~~i~~Ik~~-G~k~GlAlnP~Tpve~l~~~l~~-vD~VLvMs 195 (246)
........++.+++. ++.+-.+-.- +..+.++.++.. +|.|++-+
T Consensus 154 ~~~~~~~~~~~i~~i~~~~~iPvia~GGI-~t~~~~~~~l~~GadgV~iGs 203 (221)
T PRK01130 154 TKKPEEPDFALLKELLKAVGCPVIAEGRI-NTPEQAKKALELGAHAVVVGG 203 (221)
T ss_pred CCCCCCcCHHHHHHHHHhCCCCEEEECCC-CCHHHHHHHHHCCCCEEEEch
Confidence 011224567777765 4433332222 345777788776 89887753
No 282
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=81.71 E-value=29 Score=33.93 Aligned_cols=132 Identities=11% Similarity=0.170 Sum_probs=80.6
Q ss_pred cccChhhHHHHHHHHHHcCCCEEEeeeccCccc---CC-CCCCHHHHhhcccCCCCCeeEEEeccCccc----chHHHHh
Q 025927 65 LSANFAKLGEQVKAVELAGCDWIHVDVMDGRFV---PN-ITIGPLVVDALRPVTDLPLDVHLMIVEPEQ----RVPDFIK 136 (246)
Q Consensus 65 l~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FV---pN-~tfgp~~I~~ir~~t~~plDvHLMV~~P~~----~i~~~~~ 136 (246)
-+-++.++-+|++.+.+.|++.+-+ -|-+|. .. ..| .+.++++.+..+ ...+.++..+|.. .++.+.+
T Consensus 181 rsr~~e~Iv~Ei~~l~~~G~kei~l--~~~~~~~y~~~~~~l-~~Ll~~l~~~~~-~~~ir~~~~~p~~~~~ell~~m~~ 256 (449)
T PRK14332 181 RSRDPKSIVREIQDLQEKGIRQVTL--LGQNVNSYKEQSTDF-AGLIQMLLDETT-IERIRFTSPHPKDFPDHLLSLMAK 256 (449)
T ss_pred ccCCHHHHHHHHHHHHHCCCeEEEE--ecccCCcccCCcccH-HHHHHHHhcCCC-cceEEEECCCcccCCHHHHHHHHh
Confidence 4567888999999999989877754 222221 11 112 344455544332 2356777778765 4556667
Q ss_pred cC--CCEEEEccCCcc------------cccHHHHHHHHHHcC--Cc--EEEEEc-CCCChHHHHHhhhh-----cce--
Q 025927 137 AG--ADIVSVHCEQSS------------TIHLHRTLNQIKDLG--AK--AGVVLN-PATSLSAIECVLDV-----VDL-- 190 (246)
Q Consensus 137 ag--ad~It~H~E~~~------------~~~~~~~i~~Ik~~G--~k--~GlAln-P~Tpve~l~~~l~~-----vD~-- 190 (246)
+| +.++.+-+|+.+ ..+..+.++.+|+.+ +. .-+.+. |+-..++++..++. +|.
T Consensus 257 ~~~~~~~l~lgvQSgsd~vLk~m~R~~t~~~~~~~i~~lr~~~p~i~i~td~IvGfPgET~edf~~tl~~v~~l~~~~~~ 336 (449)
T PRK14332 257 NPRFCPNIHLPLQAGNTRVLEEMKRSYSKEEFLDVVKEIRNIVPDVGITTDIIVGFPNETEEEFEDTLAVVREVQFDMAF 336 (449)
T ss_pred CCCccceEEECCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEeeCCCCCHHHHHHHHHHHHhCCCCEEE
Confidence 77 778888898742 223567778888763 32 334444 77777777665543 565
Q ss_pred EEEEeecCCC
Q 025927 191 VLIMSVNPGF 200 (246)
Q Consensus 191 VLvMsV~PGf 200 (246)
+...|..||-
T Consensus 337 ~f~ys~~~GT 346 (449)
T PRK14332 337 MFKYSEREGT 346 (449)
T ss_pred EEEecCCCCC
Confidence 4557777874
No 283
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=81.69 E-value=5.8 Score=36.31 Aligned_cols=73 Identities=12% Similarity=0.229 Sum_probs=47.5
Q ss_pred HHHHHHHHHc---CCcEEEEEcCCCChHHHHHhh-hhcceEEEEeecCCCCCCcccHHHHHHHHHHHHHHHhcCCCCeEE
Q 025927 155 HRTLNQIKDL---GAKAGVVLNPATSLSAIECVL-DVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIE 230 (246)
Q Consensus 155 ~~~i~~Ik~~---G~k~GlAlnP~Tpve~l~~~l-~~vD~VLvMsV~PGfgGQ~F~~~~l~KI~~lr~l~~~~~~~~~I~ 230 (246)
...++.+|+. +.++|+-.+ .++++...+ ..+|+|++= +|-++ .++++.++..+ +..++
T Consensus 169 ~~~v~~~r~~~~~~~~Igvev~---s~eea~~A~~~gaDyI~ld---------~~~~e---~l~~~~~~~~~---~ipi~ 230 (268)
T cd01572 169 TEAVRRARAAAPFTLKIEVEVE---TLEQLKEALEAGADIIMLD---------NMSPE---ELREAVALLKG---RVLLE 230 (268)
T ss_pred HHHHHHHHHhCCCCCeEEEEEC---CHHHHHHHHHcCCCEEEEC---------CcCHH---HHHHHHHHcCC---CCcEE
Confidence 3456666765 467777776 456666655 358999882 23343 34444444422 46799
Q ss_pred EeCCCChhhhhhccc
Q 025927 231 VDGGVGPKNAYKVPN 245 (246)
Q Consensus 231 VDGGI~~e~i~~l~~ 245 (246)
+=||||.+|++++++
T Consensus 231 AiGGI~~~ni~~~a~ 245 (268)
T cd01572 231 ASGGITLENIRAYAE 245 (268)
T ss_pred EECCCCHHHHHHHHH
Confidence 999999999998764
No 284
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=81.47 E-value=28 Score=33.61 Aligned_cols=134 Identities=11% Similarity=0.181 Sum_probs=74.6
Q ss_pred ccChhhHHHHHHHHHHcCCCEEEe-eeccCcccCCCCCC---HHHHhhcccCCCCCeeEEEeccCcccc----hHHHHhc
Q 025927 66 SANFAKLGEQVKAVELAGCDWIHV-DVMDGRFVPNITIG---PLVVDALRPVTDLPLDVHLMIVEPEQR----VPDFIKA 137 (246)
Q Consensus 66 ~aD~~~l~~~i~~l~~~g~d~lHi-DIMDG~FVpN~tfg---p~~I~~ir~~t~~plDvHLMV~~P~~~----i~~~~~a 137 (246)
+-++..+-+|++.+.+.|++.+.+ |.--+.|-..+.-+ .+.++.+.+..++. -+-++..+|... ++.+.++
T Consensus 168 sr~~e~Iv~Ei~~l~~~g~kei~l~~~n~~~yg~~~~~~~~l~~Ll~~~~~~~~~~-~~~~~~~~p~~~~~ell~~l~~~ 246 (434)
T PRK14330 168 SRPMEDILEEVEKLAKQGYREVTFLGQNVDAYGKDLKDGSSLAKLLEEASKIEGIE-RIWFLTSYPTDFSDELIEVIANS 246 (434)
T ss_pred cCCHHHHHHHHHHHHHCCCcEEEEEEecccccccCCCCCccHHHHHHHHHhcCCce-EEEEecCChhhcCHHHHHHHhcC
Confidence 456778888999998889988876 32212332111111 23344433333322 233455566654 5555666
Q ss_pred C--CCEEEEccCCcc------------cccHHHHHHHHHHc--CCcEEE--EEc-CCCChHHHHHhhhh-----cceEE-
Q 025927 138 G--ADIVSVHCEQSS------------TIHLHRTLNQIKDL--GAKAGV--VLN-PATSLSAIECVLDV-----VDLVL- 192 (246)
Q Consensus 138 g--ad~It~H~E~~~------------~~~~~~~i~~Ik~~--G~k~Gl--Aln-P~Tpve~l~~~l~~-----vD~VL- 192 (246)
| +..+.+-+|+.+ .++..+.++.+|+. |+.++. .+. |+-..+.++.-++. +|.+.
T Consensus 247 ~~~~~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~~~i~i~~d~IvGfPgET~edf~~tl~fi~~~~~~~~~~ 326 (434)
T PRK14330 247 PKVAKSIHLPVQSGSNRILKLMNRRYTREEYLELIEKIRSKVPDASISSDIIVGFPTETEEDFMETVDLVEKAQFERLNL 326 (434)
T ss_pred CcccCceecCcCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEECCCCCHHHHHHHHHHHHhcCCCEEee
Confidence 6 577888888742 12356788888886 555443 333 55555555554432 55554
Q ss_pred -EEeecCCC
Q 025927 193 -IMSVNPGF 200 (246)
Q Consensus 193 -vMsV~PGf 200 (246)
.+|-.||=
T Consensus 327 ~~~sp~pGT 335 (434)
T PRK14330 327 AIYSPREGT 335 (434)
T ss_pred eeccCCCCC
Confidence 46666773
No 285
>cd08208 RLP_Photo Ribulose bisphosphate carboxylase like proteins from phototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=81.46 E-value=3.6 Score=40.41 Aligned_cols=119 Identities=18% Similarity=0.132 Sum_probs=81.1
Q ss_pred cceeccccCCCCCCceeccccceeeeeeccccccCCCCCcEEeeeecccChhhHHHHHHHHHHcCCCEEEeeeccCcccC
Q 025927 19 GFMLQKTNLNQPSSLSFTRRRIQTIVKASARVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVP 98 (246)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IsPSIl~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVp 98 (246)
++.-.+-++..|+- .--+.|++.+..|-.|..+-...+..-++-+- ++...+.+..+.+.+.|++.+.+|++
T Consensus 191 D~IKDDE~l~~q~f-~p~~eRv~~~~~ai~~a~~eTG~~~~ya~NiT-~~~~em~~ra~~a~~~G~~~vmv~~~------ 262 (424)
T cd08208 191 DIAKDDEMLADVDW-CPLEERAALLGKARRRAEAETGVPKIYLANIT-DEVDRLMELHDVAVRNGANALLINAM------ 262 (424)
T ss_pred ccccccccccCCCC-CCHHHHHHHHHHHHHHHHHhhCCcceEEEEcc-CCHHHHHHHHHHHHHhCCCEEEEeee------
Confidence 55555555544433 23355666666666555544443555666665 58999999999999999999999975
Q ss_pred CCCCCHHHHhhcccCCCCCeeEEE-----eccCccc------chHHHHhcCCCEEEEccC
Q 025927 99 NITIGPLVVDALRPVTDLPLDVHL-----MIVEPEQ------RVPDFIKAGADIVSVHCE 147 (246)
Q Consensus 99 N~tfgp~~I~~ir~~t~~plDvHL-----MV~~P~~------~i~~~~~agad~It~H~E 147 (246)
+.|...+..|++.+++|+.+|= |...|.. +-+.+.-+|+|.+.++-+
T Consensus 263 --~~G~~al~~L~~~~~l~ihaHra~~ga~~r~~~~Gis~~vl~Kl~RLaGaD~ih~~~~ 320 (424)
T cd08208 263 --PVGLSAVRMLRKHAQVPLIAHFPFIASFSRLEKYGIHSRVMTKLQRLAGLDVVIMPGF 320 (424)
T ss_pred --cccHHHHHHHHhcCCCeEEeccCccccccCCCCCCCcHHHHHHHHHHcCCCeeeccCC
Confidence 4466789999988889999885 5555552 223334579999988653
No 286
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=81.38 E-value=6.9 Score=36.30 Aligned_cols=139 Identities=22% Similarity=0.246 Sum_probs=84.1
Q ss_pred CcEEeeeecccChhhHHHHHHHHHHcCCCEEEeeeccC---------cccCCCCCCHH----HHhhcccCCCCCeeEEEe
Q 025927 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDG---------RFVPNITIGPL----VVDALRPVTDLPLDVHLM 123 (246)
Q Consensus 57 ~~~IsPSIl~aD~~~l~~~i~~l~~~g~d~lHiDIMDG---------~FVpN~tfgp~----~I~~ir~~t~~plDvHLM 123 (246)
+-.+.+-|+..|...+.+..+.+.+.|+|. +|+-=| .+--.+.-.|+ +++++++.+++|+-|=+=
T Consensus 53 ~~p~~~Ql~g~~~~~~~~aa~~~~~~~~~~--IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR 130 (309)
T PF01207_consen 53 ERPLIVQLFGNDPEDLAEAAEIVAELGFDG--IDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVSVKIR 130 (309)
T ss_dssp T-TEEEEEE-S-HHHHHHHHHHHCCTT-SE--EEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEE
T ss_pred ccceeEEEeeccHHHHHHHHHhhhccCCcE--EeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccccceEEecc
Confidence 356889999999999999999888766664 455333 22222333344 455557667788877766
Q ss_pred ccC---c---ccchHHHHhcCCCEEEEccCCcc-----cccHHHHHHHHHHcCCcEEEEEcCC-CChHHHHHhhhh--cc
Q 025927 124 IVE---P---EQRVPDFIKAGADIVSVHCEQSS-----TIHLHRTLNQIKDLGAKAGVVLNPA-TSLSAIECVLDV--VD 189 (246)
Q Consensus 124 V~~---P---~~~i~~~~~agad~It~H~E~~~-----~~~~~~~i~~Ik~~G~k~GlAlnP~-Tpve~l~~~l~~--vD 189 (246)
+-. + ..+++.+.++|++.||+|..+-. ..++ ..+..+++. +++=|..|-+ ++.++++.+++. +|
T Consensus 131 ~g~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w-~~i~~i~~~-~~ipvi~NGdI~s~~d~~~~~~~tg~d 208 (309)
T PF01207_consen 131 LGWDDSPEETIEFARILEDAGVSAITVHGRTRKQRYKGPADW-EAIAEIKEA-LPIPVIANGDIFSPEDAERMLEQTGAD 208 (309)
T ss_dssp SECT--CHHHHHHHHHHHHTT--EEEEECS-TTCCCTS---H-HHHHHCHHC--TSEEEEESS--SHHHHHHHCCCH-SS
T ss_pred cccccchhHHHHHHHHhhhcccceEEEecCchhhcCCcccch-HHHHHHhhc-ccceeEEcCccCCHHHHHHHHHhcCCc
Confidence 532 3 45677788899999999986421 1233 455666543 3466777776 788999999887 99
Q ss_pred eEEE---EeecCC
Q 025927 190 LVLI---MSVNPG 199 (246)
Q Consensus 190 ~VLv---MsV~PG 199 (246)
-|++ .--+|.
T Consensus 209 gvMigRgal~nP~ 221 (309)
T PF01207_consen 209 GVMIGRGALGNPW 221 (309)
T ss_dssp EEEESHHHCC-CC
T ss_pred EEEEchhhhhcCH
Confidence 9888 345565
No 287
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=81.36 E-value=1.5 Score=37.62 Aligned_cols=102 Identities=15% Similarity=0.194 Sum_probs=48.2
Q ss_pred CeeEEEeccCcccchH---HHHhcCCCEEEEccCCcccccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhhhcceE--
Q 025927 117 PLDVHLMIVEPEQRVP---DFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLV-- 191 (246)
Q Consensus 117 plDvHLMV~~P~~~i~---~~~~agad~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~~vD~V-- 191 (246)
|..+.-++.-|.+-.. .+.+.+.+.+.++.+ ..++|+.+++.|++.++|=.-++| +.-.++|..+++-
T Consensus 16 ~~~~~~~~~~Pf~~~~~~~~v~D~~g~~v~lypd------v~~iL~~L~~~gv~lavASRt~~P-~~A~~~L~~l~i~~~ 88 (169)
T PF12689_consen 16 PPWMDTHVGPPFKKISNGNVVVDSRGEEVSLYPD------VPEILQELKERGVKLAVASRTDEP-DWARELLKLLEIDDA 88 (169)
T ss_dssp SS-TTTSS-S-EEE-TTS--EEETT--EE---TT------HHHHHHHHHHCT--EEEEE--S-H-HHHHHHHHHTT-C--
T ss_pred chhHhhccCCCceecCCCCEEEeCCCCEEEeCcC------HHHHHHHHHHCCCEEEEEECCCCh-HHHHHHHHhcCCCcc
Confidence 3334444555544333 234456678888765 467899999999999999887777 5556666665444
Q ss_pred --EEEeecCCCCCCcccHHHHHHHHHHHHHHHhcCCCC
Q 025927 192 --LIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNP 227 (246)
Q Consensus 192 --LvMsV~PGfgGQ~F~~~~l~KI~~lr~l~~~~~~~~ 227 (246)
-..+....|.+...-|. .|.+.++++.++.|..+
T Consensus 89 ~~~~~~~~~~F~~~eI~~g--sK~~Hf~~i~~~tgI~y 124 (169)
T PF12689_consen 89 DGDGVPLIEYFDYLEIYPG--SKTTHFRRIHRKTGIPY 124 (169)
T ss_dssp --------CCECEEEESSS---HHHHHHHHHHHH---G
T ss_pred ccccccchhhcchhheecC--chHHHHHHHHHhcCCCh
Confidence 23333334444444444 67777777776666544
No 288
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=81.30 E-value=16 Score=34.62 Aligned_cols=102 Identities=14% Similarity=0.182 Sum_probs=62.6
Q ss_pred cchHHHHhcCCCEEEEccCCcc------------cccHHHHHHHHHHcCCc-EEEEEc---CCCChHHHHHhhhh-----
Q 025927 129 QRVPDFIKAGADIVSVHCEQSS------------TIHLHRTLNQIKDLGAK-AGVVLN---PATSLSAIECVLDV----- 187 (246)
Q Consensus 129 ~~i~~~~~agad~It~H~E~~~------------~~~~~~~i~~Ik~~G~k-~GlAln---P~Tpve~l~~~l~~----- 187 (246)
..++.+.++|+++|++=+|+.. ..+..+.++.+|+.|.. +++=+- |+...+.+..-++.
T Consensus 104 ~~l~~l~~~G~nrislGvQS~~~~~L~~l~R~~~~~~~~~ai~~~~~~g~~~v~~Dli~GlPgqt~~~~~~~l~~~~~l~ 183 (370)
T PRK06294 104 SYIRALALTGINRISIGVQTFDDPLLKLLGRTHSSSKAIDAVQECSEHGFSNLSIDLIYGLPTQSLSDFIVDLHQAITLP 183 (370)
T ss_pred HHHHHHHHCCCCEEEEccccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHccC
Confidence 3577788899999999998752 12356778888999986 665444 44555444443433
Q ss_pred cceEEE--EeecCC--C-----CCC---cccHHHHHHHHHHHHHHHhcCCCCeEEE
Q 025927 188 VDLVLI--MSVNPG--F-----GGQ---SFIESQVKKISDLRRMCLEKGVNPWIEV 231 (246)
Q Consensus 188 vD~VLv--MsV~PG--f-----gGQ---~F~~~~l~KI~~lr~l~~~~~~~~~I~V 231 (246)
+|.|-+ ++++|| + .|. +-.+...+-...+++.+.++|+. ..++
T Consensus 184 ~~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~-~yei 238 (370)
T PRK06294 184 ITHISLYNLTIDPHTSFYKHRKRLLPSIADEEILAEMSLAAEELLTSQGFT-RYEL 238 (370)
T ss_pred CCeEEEeeeEecCCChHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHcCCC-eeee
Confidence 566554 667787 2 121 11223344455567777888874 3444
No 289
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=81.26 E-value=9.3 Score=36.46 Aligned_cols=161 Identities=19% Similarity=0.215 Sum_probs=93.4
Q ss_pred ChhhHHHHHHHHHHcCCCEEEeeeccCcc-cCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEEEcc
Q 025927 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRF-VPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHC 146 (246)
Q Consensus 68 D~~~l~~~i~~l~~~g~d~lHiDIMDG~F-VpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It~H~ 146 (246)
+...+-++.+..++.|+-.+ ..+.=|+= -..+--=-+.++.+++.+++++=+=|=+-+ ....++++++|+|++.--.
T Consensus 85 ~~eeIle~Ak~ak~~Ga~r~-c~~aagr~~~~~~~~i~~~v~~Vk~~~~le~c~slG~l~-~eq~~~L~~aGvd~ynhNL 162 (335)
T COG0502 85 EVEEILEAAKKAKAAGATRF-CMGAAGRGPGRDMEEVVEAIKAVKEELGLEVCASLGMLT-EEQAEKLADAGVDRYNHNL 162 (335)
T ss_pred CHHHHHHHHHHHHHcCCceE-EEEEeccCCCccHHHHHHHHHHHHHhcCcHHhhccCCCC-HHHHHHHHHcChhheeccc
Confidence 34456677778888875321 12222221 001101123445555556666555555334 4557899999999998767
Q ss_pred CCc-----------ccccHHHHHHHHHHcCCcE--EEEEcCCCChHH-HH---Hhh--hhcceEEEEeecC--C--CCCC
Q 025927 147 EQS-----------STIHLHRTLNQIKDLGAKA--GVVLNPATSLSA-IE---CVL--DVVDLVLIMSVNP--G--FGGQ 203 (246)
Q Consensus 147 E~~-----------~~~~~~~~i~~Ik~~G~k~--GlAlnP~Tpve~-l~---~~l--~~vD~VLvMsV~P--G--fgGQ 203 (246)
|+. +-++-.+++...|++|+++ |..+.-+-+.++ ++ .+. +..|.|=||..+| | ++++
T Consensus 163 eTs~~~y~~I~tt~t~edR~~tl~~vk~~Gi~vcsGgI~GlGEs~eDri~~l~~L~~l~~pdsVPIn~l~P~~GTPle~~ 242 (335)
T COG0502 163 ETSPEFYENIITTRTYEDRLNTLENVREAGIEVCSGGIVGLGETVEDRAELLLELANLPTPDSVPINFLNPIPGTPLENA 242 (335)
T ss_pred ccCHHHHcccCCCCCHHHHHHHHHHHHHcCCccccceEecCCCCHHHHHHHHHHHHhCCCCCeeeeeeecCCCCCccccC
Confidence 753 1123557899999999996 666666655544 22 221 2388999999998 3 3322
Q ss_pred c-cc-HHHHHHHHHHHHHHHhcCCCCeEEEeCC
Q 025927 204 S-FI-ESQVKKISDLRRMCLEKGVNPWIEVDGG 234 (246)
Q Consensus 204 ~-F~-~~~l~KI~~lr~l~~~~~~~~~I~VDGG 234 (246)
+ .. -+.++-|+-+|-.+++. .|-+=||
T Consensus 243 ~~~~~~e~lk~IA~~Ri~~P~~----~Ir~s~g 271 (335)
T COG0502 243 KPLDPFEFLKTIAVARIIMPKS----MIRLSAG 271 (335)
T ss_pred CCCCHHHHHHHHHHHHHHCCcc----eeEccCC
Confidence 2 11 24566677777776654 3444455
No 290
>PRK01060 endonuclease IV; Provisional
Probab=81.06 E-value=22 Score=31.56 Aligned_cols=135 Identities=14% Similarity=0.158 Sum_probs=80.0
Q ss_pred HHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccC---CCCC---eeEEE------eccCcc----------c
Q 025927 72 LGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV---TDLP---LDVHL------MIVEPE----------Q 129 (246)
Q Consensus 72 l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~---t~~p---lDvHL------MV~~P~----------~ 129 (246)
+++.++.+.+.|.|.+.+.+-..++...-.+.++.++++|+. .++. +-+|. ...+|. +
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~p~~~~~~~~~~~~~~~lk~~~~~~gl~~~~~~~h~~~~~nl~~~d~~~r~~s~~~~~~ 93 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGNPQQWKRKPLEELNIEAFKAACEKYGISPEDILVHAPYLINLGNPNKEILEKSRDFLIQ 93 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCCCCceEEecceEecCCCCCHHHHHHHHHHHHH
Confidence 889999999999999999887666554445677777777652 4444 55554 333442 1
Q ss_pred chHHHHhcCCCEEEEccCCcc----cc-cHHHHHHHHHHc---CCcEEEEEcCC--------CChHHHHHhhhhcceE--
Q 025927 130 RVPDFIKAGADIVSVHCEQSS----TI-HLHRTLNQIKDL---GAKAGVVLNPA--------TSLSAIECVLDVVDLV-- 191 (246)
Q Consensus 130 ~i~~~~~agad~It~H~E~~~----~~-~~~~~i~~Ik~~---G~k~GlAlnP~--------Tpve~l~~~l~~vD~V-- 191 (246)
.++.-.+.||.+|.+|.-... .. ...++.+.+++. .-.+-|+|-+- ...+.+..+++.+|--
T Consensus 94 ~i~~A~~lga~~vv~h~G~~~~~~~~~~~~~~~~e~l~~l~~~~~gv~l~iEn~~~~~~~~~~~~~~~~~l~~~v~~~~~ 173 (281)
T PRK01060 94 EIERCAALGAKLLVFHPGSHLGDIDEEDCLARIAESLNEALDKTQGVTIVLENTAGQGSELGRRFEELARIIDGVEDKSR 173 (281)
T ss_pred HHHHHHHcCCCEEEEcCCcCCCCCcHHHHHHHHHHHHHHHHhcCCCCEEEEecCCCCCCcccCCHHHHHHHHHhcCCccc
Confidence 223334579999999975310 01 223333333322 22344566442 2456777788777642
Q ss_pred EEEeecCC---CCCCccc
Q 025927 192 LIMSVNPG---FGGQSFI 206 (246)
Q Consensus 192 LvMsV~PG---fgGQ~F~ 206 (246)
+-++.++| +.|+.+.
T Consensus 174 vg~~lD~gH~~~~g~d~~ 191 (281)
T PRK01060 174 VGVCLDTCHAFAAGYDLR 191 (281)
T ss_pred EEEEEeHHhHhhcCCChH
Confidence 45677776 3455433
No 291
>PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function.; PDB: 3C6C_A 2Y7G_B 2Y7F_B 2Y7D_D 2Y7E_B 3LOT_A 3FA5_B 3NO5_C 3E02_A 3E49_B ....
Probab=80.60 E-value=6.3 Score=36.08 Aligned_cols=150 Identities=17% Similarity=0.222 Sum_probs=85.4
Q ss_pred cChhhHHHHHHHHHHcCCCEEEeeec---cCcccCCCCCCHHHHhhcccC-CCCCeeEEEe---ccCcccchHHHHhcCC
Q 025927 67 ANFAKLGEQVKAVELAGCDWIHVDVM---DGRFVPNITIGPLVVDALRPV-TDLPLDVHLM---IVEPEQRVPDFIKAGA 139 (246)
Q Consensus 67 aD~~~l~~~i~~l~~~g~d~lHiDIM---DG~FVpN~tfgp~~I~~ir~~-t~~plDvHLM---V~~P~~~i~~~~~aga 139 (246)
.-+..+.++..++.++|+..+|+.+- ||.=..+...=-++++.||+. +++.+.+=.= -.+++.-+..+.....
T Consensus 23 ~tpeEia~~A~~c~~AGAa~vH~H~R~~~~G~~s~d~~~~~e~~~~IR~~~pd~iv~~Ttg~~~~~~~~~R~~~v~~~~p 102 (272)
T PF05853_consen 23 ITPEEIAADAVACYEAGAAIVHIHARDDEDGRPSLDPELYAEVVEAIRAACPDLIVQPTTGGGGGPDPEERLAHVEAWKP 102 (272)
T ss_dssp -SHHHHHHHHHHHHHHTESEEEE-EE-TTTS-EE--HHHHHHHHHHHHHHSTTSEEEEESSTTTTSGHHHHCTHHHHH--
T ss_pred CCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCcCCCHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCHHHHHHHHHhcCC
Confidence 44578889999999999999999998 666444443445677777876 6654432211 1123333333333367
Q ss_pred CEEEEccCCc-----------ccccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhhh------cceEEEEeecCCCCC
Q 025927 140 DIVSVHCEQS-----------STIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV------VDLVLIMSVNPGFGG 202 (246)
Q Consensus 140 d~It~H~E~~-----------~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~~------vD~VLvMsV~PGfgG 202 (246)
|+.++-.=+. +...+.++++.++++|+++-+.+--..-++.+..|++. +-+-++|.+. +|
T Consensus 103 d~asl~~gs~n~~~~~~~~~n~~~~~~~~~~~~~e~Gi~pe~ev~d~~~l~~~~~l~~~G~l~~p~~~~~vlG~~---~g 179 (272)
T PF05853_consen 103 DMASLNPGSMNFGTRDRVYINTPADARELARRMRERGIKPEIEVFDPGHLRNARRLIEKGLLPGPLLVNFVLGVP---GG 179 (272)
T ss_dssp SEEEEE-S-EEESGGCSEE---HHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHTTSS-SSEEEEEEES-T---TS
T ss_pred CeEEecccccccccCCceecCCHHHHHHHHHHHHHcCCeEEEEEEcHHHHHHHHHHHHCCCCCCCeEEEEcccCC---CC
Confidence 7777743321 12346789999999999999998766667777777654 2233444332 77
Q ss_pred CcccHHHHHHHHHHHHHHHh
Q 025927 203 QSFIESQVKKISDLRRMCLE 222 (246)
Q Consensus 203 Q~F~~~~l~KI~~lr~l~~~ 222 (246)
++-.+..+. .+...+++
T Consensus 180 ~~~~~~~l~---~~l~~l~~ 196 (272)
T PF05853_consen 180 MPATPENLL---AMLDMLPE 196 (272)
T ss_dssp --S-HHHHH---HHHHHHHH
T ss_pred CCCCHHHHH---HHHHhcCC
Confidence 777776665 34444444
No 292
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=80.55 E-value=5.7 Score=37.22 Aligned_cols=77 Identities=22% Similarity=0.274 Sum_probs=50.9
Q ss_pred cHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhhh-cceEEEEeecCCCCCCcccHHHHHHHHHHHHHHHhcCCCCeEEE
Q 025927 153 HLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV 231 (246)
Q Consensus 153 ~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~~-vD~VLvMsV~PGfgGQ~F~~~~l~KI~~lr~l~~~~~~~~~I~V 231 (246)
.+.+.++.+|+..-..=|.+-.+| ++.+++.++. +|.|++= +|.|+.+++.- ++++. +..+|+
T Consensus 191 ~i~~av~~~r~~~~~~kIeVEvet-leea~eA~~aGaDiImLD---------nmspe~l~~av---~~~~~---~~~lEa 254 (294)
T PRK06978 191 GVGAALDAAFALNAGVPVQIEVET-LAQLETALAHGAQSVLLD---------NFTLDMMREAV---RVTAG---RAVLEV 254 (294)
T ss_pred CHHHHHHHHHHhCCCCcEEEEcCC-HHHHHHHHHcCCCEEEEC---------CCCHHHHHHHH---HhhcC---CeEEEE
Confidence 356778888875422225566555 6666676664 9998883 44556555433 33332 468999
Q ss_pred eCCCChhhhhhccc
Q 025927 232 DGGVGPKNAYKVPN 245 (246)
Q Consensus 232 DGGI~~e~i~~l~~ 245 (246)
=||||.+|++++++
T Consensus 255 SGGIt~~ni~~yA~ 268 (294)
T PRK06978 255 SGGVNFDTVRAFAE 268 (294)
T ss_pred ECCCCHHHHHHHHh
Confidence 99999999998754
No 293
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=80.54 E-value=19 Score=30.63 Aligned_cols=106 Identities=25% Similarity=0.198 Sum_probs=66.6
Q ss_pred HHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEEEccCCcccc
Q 025927 73 GEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTI 152 (246)
Q Consensus 73 ~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It~H~E~~~~~ 152 (246)
.++++.+.+.|++.+|..-.| ++.++..++. +.++- .=+.+|+... ...++|+|+|-+.... ..
T Consensus 66 ~~~~~~a~~~Ga~~i~~p~~~----------~~~~~~~~~~-~~~~i--~gv~t~~e~~-~A~~~Gad~i~~~p~~--~~ 129 (190)
T cd00452 66 PEQADAAIAAGAQFIVSPGLD----------PEVVKAANRA-GIPLL--PGVATPTEIM-QALELGADIVKLFPAE--AV 129 (190)
T ss_pred HHHHHHHHHcCCCEEEcCCCC----------HHHHHHHHHc-CCcEE--CCcCCHHHHH-HHHHCCCCEEEEcCCc--cc
Confidence 357788888999999954332 5667766553 44332 3445776644 4467899999875432 22
Q ss_pred cHHHHHHHHHHcCC-cEEEEEcCCCChHHHHHhhhh-cceEEEEee
Q 025927 153 HLHRTLNQIKDLGA-KAGVVLNPATSLSAIECVLDV-VDLVLIMSV 196 (246)
Q Consensus 153 ~~~~~i~~Ik~~G~-k~GlAlnP~Tpve~l~~~l~~-vD~VLvMsV 196 (246)
..+.++.+++.-- ..-+|+. +-..+.+..|+.. +|.|-+-+.
T Consensus 130 -g~~~~~~l~~~~~~~p~~a~G-GI~~~n~~~~~~~G~~~v~v~s~ 173 (190)
T cd00452 130 -GPAYIKALKGPFPQVRFMPTG-GVSLDNAAEWLAAGVVAVGGGSL 173 (190)
T ss_pred -CHHHHHHHHhhCCCCeEEEeC-CCCHHHHHHHHHCCCEEEEEchh
Confidence 3456777765321 3344443 5677889888875 777766544
No 294
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=80.53 E-value=10 Score=37.41 Aligned_cols=168 Identities=17% Similarity=0.114 Sum_probs=85.7
Q ss_pred EEeeeecccC-hhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhc
Q 025927 59 IVSPSILSAN-FAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKA 137 (246)
Q Consensus 59 ~IsPSIl~aD-~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~a 137 (246)
.|+++-.+.. -..+.+.++++.+.|++++|+-.-+- +.-.+ -+.++.+++.+. ...+-|++.+ +++...+.
T Consensus 295 ~it~~~~~~~~~~~~~~~l~~~l~~Gv~~vqlR~k~~---~~~~~-~~~a~~l~~~~~-~~~~~liind---~~~lA~~~ 366 (502)
T PLN02898 295 AVTDSGMNKKWGRSTVDAVRAAIEGGATIVQLREKEA---ETREF-IEEAKACLAICR-SYGVPLLIND---RVDVALAC 366 (502)
T ss_pred EEECccccccccchHHHHHHHHHHcCCCEEEEccCCC---CHHHH-HHHHHHHHHHHH-HhCCEEEEcC---hHHHHHhc
Confidence 4555544211 12366788899999999999964321 11000 123333333322 2356677765 35555677
Q ss_pred CCCEEEEccCCcccccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhhhcceEEEEeecCCCCCCcccHHHHHHHHHHH
Q 025927 138 GADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLR 217 (246)
Q Consensus 138 gad~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~~vD~VLvMsV~PGfgGQ~F~~~~l~KI~~lr 217 (246)
|+|-|++-.+. ... ...+.+...+..+|+.. .|.-|...-.-..+|+|.+=.+-|--.-....+--++.++++.
T Consensus 367 ~adGvHl~~~d---~~~-~~~r~~~~~~~~iG~S~--h~~~e~~~a~~~gadyi~~gpif~t~tk~~~~~~g~~~~~~~~ 440 (502)
T PLN02898 367 DADGVHLGQSD---MPV-RLARSLLGPGKIIGVSC--KTPEQAEQAWKDGADYIGCGGVFPTNTKANNKTIGLDGLREVC 440 (502)
T ss_pred CCCEEEeChHh---cCH-HHHHHhcCCCCEEEEeC--CCHHHHHHHhhcCCCEEEECCeecCCCCCCCCCCCHHHHHHHH
Confidence 88866543221 111 12222112345566664 4443333333346999986444432110011222345555554
Q ss_pred HHHHhcCCCCeEEEeCCCChhhhhhccc
Q 025927 218 RMCLEKGVNPWIEVDGGVGPKNAYKVPN 245 (246)
Q Consensus 218 ~l~~~~~~~~~I~VDGGI~~e~i~~l~~ 245 (246)
+.. +..+..=|||+.+|++++.+
T Consensus 441 ~~~-----~~Pv~aiGGI~~~~~~~~~~ 463 (502)
T PLN02898 441 EAS-----KLPVVAIGGISASNAASVME 463 (502)
T ss_pred HcC-----CCCEEEECCCCHHHHHHHHH
Confidence 332 34466669999999998753
No 295
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=80.26 E-value=59 Score=31.52 Aligned_cols=133 Identities=11% Similarity=0.179 Sum_probs=78.2
Q ss_pred ccChhhHHHHHHHHHHcCCCEEEe-eeccCccc---CCCCCCHHHHhhcccCCCCCeeEEEeccCccc----chHHHHhc
Q 025927 66 SANFAKLGEQVKAVELAGCDWIHV-DVMDGRFV---PNITIGPLVVDALRPVTDLPLDVHLMIVEPEQ----RVPDFIKA 137 (246)
Q Consensus 66 ~aD~~~l~~~i~~l~~~g~d~lHi-DIMDG~FV---pN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~----~i~~~~~a 137 (246)
+-.+..+.+|++.+.+.|++.+.+ |.-=++|- |+..=-.+.++.+.+. +++ .+++...+|.. .++.+.+.
T Consensus 166 sr~~e~Iv~Ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~~~~Ll~~l~~~-~i~-~ir~~~~~p~~i~~ell~~l~~~ 243 (440)
T PRK14334 166 SRHPDLILRELELLKAAGVQEVTLLGQNVNSYGVDQPGFPSFAELLRLVGAS-GIP-RVKFTTSHPMNFTDDVIAAMAET 243 (440)
T ss_pred cCCHHHHHHHHHHHHHCCCeEEEEEeccccccccCCCCcCCHHHHHHHHHhc-CCc-EEEEccCCcccCCHHHHHHHHhc
Confidence 567788999999999999887764 31111121 1110012445555443 322 46777777764 45566664
Q ss_pred --CCCEEEEccCCcc------------cccHHHHHHHHHHcCCcEEEEE----c-CCCChHHHHHhhhh-----cceEEE
Q 025927 138 --GADIVSVHCEQSS------------TIHLHRTLNQIKDLGAKAGVVL----N-PATSLSAIECVLDV-----VDLVLI 193 (246)
Q Consensus 138 --gad~It~H~E~~~------------~~~~~~~i~~Ik~~G~k~GlAl----n-P~Tpve~l~~~l~~-----vD~VLv 193 (246)
|+.++.+-+|+.+ .++..+.++.+|+.|..+.+.. . |+-..+.++.-++. .|.+.+
T Consensus 244 ~~g~~~l~igvQSgs~~vLk~m~R~~~~~~~~~~v~~lr~~~~~i~i~~d~IvG~PgEt~ed~~~tl~~i~~l~~~~i~~ 323 (440)
T PRK14334 244 PAVCEYIHLPVQSGSDRVLRRMAREYRREKYLERIAEIREALPDVVLSTDIIVGFPGETEEDFQETLSLYDEVGYDSAYM 323 (440)
T ss_pred CcCCCeEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEECCCCCHHHHHHHHHHHHhcCCCEeee
Confidence 4889999999752 1125577888898875543322 2 66666666655543 555544
Q ss_pred --EeecCCC
Q 025927 194 --MSVNPGF 200 (246)
Q Consensus 194 --MsV~PGf 200 (246)
.+..||-
T Consensus 324 f~ysp~pGT 332 (440)
T PRK14334 324 FIYSPRPGT 332 (440)
T ss_pred eEeeCCCCC
Confidence 4556663
No 296
>PRK05481 lipoyl synthase; Provisional
Probab=80.22 E-value=48 Score=30.47 Aligned_cols=159 Identities=15% Similarity=0.164 Sum_probs=89.2
Q ss_pred ccChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCC--CCHHHHhhcccCCCCCeeEEEeccCccc---chHHHHhcCCC
Q 025927 66 SANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNIT--IGPLVVDALRPVTDLPLDVHLMIVEPEQ---RVPDFIKAGAD 140 (246)
Q Consensus 66 ~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~t--fgp~~I~~ir~~t~~plDvHLMV~~P~~---~i~~~~~agad 140 (246)
+.+...+.++++.+.+.|++.+|+==-|..-.|... .=.+.+++|++... .+-++++..+|.. .+..+.++|++
T Consensus 79 s~~~eeI~~ea~~l~~~G~kEI~L~gg~~~d~~~~~~~~l~~Ll~~I~~~~p-~irI~~l~~~~~~~~e~L~~l~~ag~~ 157 (289)
T PRK05481 79 PLDPDEPERVAEAVARMGLKYVVITSVDRDDLPDGGAQHFAETIRAIRELNP-GTTIEVLIPDFRGRMDALLTVLDARPD 157 (289)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEEeeCCCcccccHHHHHHHHHHHHhhCC-CcEEEEEccCCCCCHHHHHHHHhcCcc
Confidence 367888999999999999999998533311001111 11356666665321 1347777777753 34456778999
Q ss_pred EEEEccCCc-----------ccccHHHHHHHHHHc--CCcE--EEEEcCCCChHHHHHhhh-----hcceEEEEeecC-C
Q 025927 141 IVSVHCEQS-----------STIHLHRTLNQIKDL--GAKA--GVVLNPATSLSAIECVLD-----VVDLVLIMSVNP-G 199 (246)
Q Consensus 141 ~It~H~E~~-----------~~~~~~~~i~~Ik~~--G~k~--GlAlnP~Tpve~l~~~l~-----~vD~VLvMsV~P-G 199 (246)
.+..-.|+. +.++..++++.+|+. |+.. |+.+..+-..+++...+. .+|.+-+..=-| .
T Consensus 158 i~~~~~ets~~vlk~m~r~~t~e~~le~i~~ar~~~pgi~~~t~~IvGfGET~ed~~~tl~~lrel~~d~v~if~Ys~pa 237 (289)
T PRK05481 158 VFNHNLETVPRLYKRVRPGADYERSLELLKRAKELHPGIPTKSGLMVGLGETDEEVLEVMDDLRAAGVDILTIGQYLQPS 237 (289)
T ss_pred eeeccccChHHHHHHhCCCCCHHHHHHHHHHHHHhCCCCeEeeeeEEECCCCHHHHHHHHHHHHhcCCCEEEEEccCCCc
Confidence 888766642 112345667777777 6554 455555545555554433 256666654443 2
Q ss_pred C-CCCcccHHHHHHHHHHHHHHHhcCC
Q 025927 200 F-GGQSFIESQVKKISDLRRMCLEKGV 225 (246)
Q Consensus 200 f-gGQ~F~~~~l~KI~~lr~l~~~~~~ 225 (246)
. .=|-=....-++.+++.++..+-|.
T Consensus 238 ~k~~~v~~~~k~~r~~~l~~~~~~i~~ 264 (289)
T PRK05481 238 RKHLPVERYVTPEEFDEYKEIALELGF 264 (289)
T ss_pred cccCCCCCcCCHHHHHHHHHHHHHcCc
Confidence 1 1122222334455555666555554
No 297
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=80.18 E-value=15 Score=33.16 Aligned_cols=115 Identities=17% Similarity=0.227 Sum_probs=70.6
Q ss_pred hHHHHhcCCCEEEE-ccCCc-----ccccHHHHHHHHHHcCCcEEEEEcCCCC-------h----HHHHHhhhhcce--E
Q 025927 131 VPDFIKAGADIVSV-HCEQS-----STIHLHRTLNQIKDLGAKAGVVLNPATS-------L----SAIECVLDVVDL--V 191 (246)
Q Consensus 131 i~~~~~agad~It~-H~E~~-----~~~~~~~~i~~Ik~~G~k~GlAlnP~Tp-------v----e~l~~~l~~vD~--V 191 (246)
.+.+.++|++++.+ |.|-= +...+.+-++...++|+++=+.+.-... . ..+...++.++. =
T Consensus 77 ~~mL~d~G~~~viiGHSERR~~f~Et~~~i~~Kv~~a~~~gl~pIvCiGE~~~~r~~~~~~~~~~~Ql~~~l~~~~~~~~ 156 (242)
T cd00311 77 AEMLKDAGAKYVIIGHSERRQYFGETDEDVAKKVKAALEAGLTPILCVGETLEEREAGKTEEVVAAQLAAVLAGVEDLAP 156 (242)
T ss_pred HHHHHHcCCCEEEeCcccccCcCCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHcCCHHHHHHHHHHHHHhcchhhcC
Confidence 45678888876655 54421 2345666777788999998777763211 1 112222222210 1
Q ss_pred EEEeecCCC---CCCcccHH-HHHHHHHHHHHHHhcC----CCCeEEEeCCCChhhhhhccc
Q 025927 192 LIMSVNPGF---GGQSFIES-QVKKISDLRRMCLEKG----VNPWIEVDGGVGPKNAYKVPN 245 (246)
Q Consensus 192 LvMsV~PGf---gGQ~F~~~-~l~KI~~lr~l~~~~~----~~~~I~VDGGI~~e~i~~l~~ 245 (246)
+++.-||=+ .|..-.++ .-+-++.+|+.+.+.. -+..|.-=|||+.+|++++.+
T Consensus 157 ~iIAYEPvWAIGtG~~as~~~~~ev~~~ir~~l~~~~~~~~~~~~IlYGGSV~~~N~~~l~~ 218 (242)
T cd00311 157 VVIAYEPVWAIGTGKTASPEQAQEVHAFIRKLLAELYGEVAEKVRILYGGSVNPENAAELLA 218 (242)
T ss_pred eEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcccccCceeEEECCCCCHHHHHHHhc
Confidence 678889932 46665555 5555566677665432 246788999999999998764
No 298
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=80.13 E-value=10 Score=35.30 Aligned_cols=79 Identities=11% Similarity=0.217 Sum_probs=49.2
Q ss_pred cHHHHHHHHHHc-CCcEEEEEcCCCChHHHHHhhh-hcceEEEEeecCCCCCCcccHHHHHHHHHHHHHHHhcCCCCeEE
Q 025927 153 HLHRTLNQIKDL-GAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIE 230 (246)
Q Consensus 153 ~~~~~i~~Ik~~-G~k~GlAlnP~Tpve~l~~~l~-~vD~VLvMsV~PGfgGQ~F~~~~l~KI~~lr~l~~~~~~~~~I~ 230 (246)
.+.+.+++.|+. +...-+-+-.+| ++++++.+. ..|.|++= .|.|+.+++.- +++. .+.+..+|
T Consensus 173 ~i~~Av~~aR~~~~~~~kIEVEves-le~~~eAl~agaDiImLD---------Nm~~e~~~~av---~~l~-~~~~~~lE 238 (280)
T COG0157 173 SITEAVRRARAAAPFTKKIEVEVES-LEEAEEALEAGADIIMLD---------NMSPEELKEAV---KLLG-LAGRALLE 238 (280)
T ss_pred cHHHHHHHHHHhCCCCceEEEEcCC-HHHHHHHHHcCCCEEEec---------CCCHHHHHHHH---HHhc-cCCceEEE
Confidence 467788888865 322334444444 444455454 49999883 44455554443 3332 23367899
Q ss_pred EeCCCChhhhhhccc
Q 025927 231 VDGGVGPKNAYKVPN 245 (246)
Q Consensus 231 VDGGI~~e~i~~l~~ 245 (246)
+=||||.+|++.+.+
T Consensus 239 aSGgIt~~ni~~yA~ 253 (280)
T COG0157 239 ASGGITLENIREYAE 253 (280)
T ss_pred EeCCCCHHHHHHHhh
Confidence 999999999998754
No 299
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=79.69 E-value=41 Score=29.31 Aligned_cols=99 Identities=19% Similarity=0.154 Sum_probs=51.2
Q ss_pred ChhhHHHHHHHHHHcCCCEEEee-eccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcc---cchHHHHhcCCCEEE
Q 025927 68 NFAKLGEQVKAVELAGCDWIHVD-VMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPE---QRVPDFIKAGADIVS 143 (246)
Q Consensus 68 D~~~l~~~i~~l~~~g~d~lHiD-IMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~---~~i~~~~~agad~It 143 (246)
-..++++-++++.++|++.+-+= -|=.+..+.+.-+...+..++..+.+++- -.++. ..++...+.|++.+.
T Consensus 19 ~~~d~~~~~~~~~~~g~~av~v~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~p----~~~~~~~~~~v~~a~~~Ga~~v~ 94 (235)
T cd00958 19 GLEDPEETVKLAAEGGADAVALTKGIARAYGREYAGDIPLIVKLNGSTSLSPK----DDNDKVLVASVEDAVRLGADAVG 94 (235)
T ss_pred cccCHHHHHHHHHhcCCCEEEeChHHHHhcccccCCCCcEEEEECCCCCCCCC----CCCchhhhcCHHHHHHCCCCEEE
Confidence 34577788888899888877653 11111122221121233333333433331 11222 237788889999886
Q ss_pred EccCCccc------ccHHHHHHHHHHcCCcEEE
Q 025927 144 VHCEQSST------IHLHRTLNQIKDLGAKAGV 170 (246)
Q Consensus 144 ~H~E~~~~------~~~~~~i~~Ik~~G~k~Gl 170 (246)
+..-.... ..+.++.+..++.|+++=+
T Consensus 95 ~~~~~~~~~~~~~~~~i~~v~~~~~~~g~~~ii 127 (235)
T cd00958 95 VTVYVGSEEEREMLEELARVAAEAHKYGLPLIA 127 (235)
T ss_pred EEEecCCchHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 66532111 1344555556678888543
No 300
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=79.68 E-value=5.5 Score=39.60 Aligned_cols=104 Identities=21% Similarity=0.236 Sum_probs=69.9
Q ss_pred ChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchH--HHHhcCCCEEEEc
Q 025927 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVP--DFIKAGADIVSVH 145 (246)
Q Consensus 68 D~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~--~~~~agad~It~H 145 (246)
+...+.+.++++++.|+|.|.+==|=|...|.-.. +.+++||+..++|+.+|.=-..=..... .-+++||++|-.=
T Consensus 161 t~~y~~~~a~~l~~~Gad~I~IkDtaG~l~P~~v~--~Lv~alk~~~~~pi~~H~Hnt~GlA~An~laAieAGad~vD~a 238 (468)
T PRK12581 161 TLNYYLSLVKELVEMGADSICIKDMAGILTPKAAK--ELVSGIKAMTNLPLIVHTHATSGISQMTYLAAVEAGADRIDTA 238 (468)
T ss_pred cHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHH--HHHHHHHhccCCeEEEEeCCCCccHHHHHHHHHHcCCCEEEee
Confidence 44557788899999999998876666777665432 4677788877889999976544332222 2367899977554
Q ss_pred cCCc----ccccHHHHHHHHHHcCCcEEEEEc
Q 025927 146 CEQS----STIHLHRTLNQIKDLGAKAGVVLN 173 (246)
Q Consensus 146 ~E~~----~~~~~~~~i~~Ik~~G~k~GlAln 173 (246)
+-.. +....+.++..++..|...|+=+.
T Consensus 239 i~g~g~gagN~~tE~lv~~L~~~g~~tgiDl~ 270 (468)
T PRK12581 239 LSPFSEGTSQPATESMYLALKEAGYDITLDET 270 (468)
T ss_pred ccccCCCcCChhHHHHHHHHHhcCCCCCcCHH
Confidence 4322 233456777788888887776443
No 301
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=79.67 E-value=9.9 Score=36.54 Aligned_cols=48 Identities=23% Similarity=0.293 Sum_probs=34.4
Q ss_pred CcccchHHHHhcCCCEEEEccCCc-----c----cccHHHHHHHHHHcCCcEE-EEEc
Q 025927 126 EPEQRVPDFIKAGADIVSVHCEQS-----S----TIHLHRTLNQIKDLGAKAG-VVLN 173 (246)
Q Consensus 126 ~P~~~i~~~~~agad~It~H~E~~-----~----~~~~~~~i~~Ik~~G~k~G-lAln 173 (246)
+|...++.++++|.+.|.+|.... . ..++.++-+.+++.|+++. +..|
T Consensus 33 ~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~~~~~~~lk~~L~~~GL~v~~v~~n 90 (382)
T TIGR02631 33 DPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQERDQIVRRFKKALDETGLKVPMVTTN 90 (382)
T ss_pred CHHHHHHHHHHhCCCEEEecccccCCCCCChhHHHHHHHHHHHHHHHhCCeEEEeecc
Confidence 778889999999999999993210 0 0124567788899999964 4443
No 302
>TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase. This model describes the cobalamin-independent methionine synthase. A family of uncharacterized archaeal proteins is homologous to the C-terminal region of this family. That family is excluded from this model but, along with this family, belongs to pfam model pfam01717.
Probab=79.66 E-value=21 Score=37.40 Aligned_cols=142 Identities=18% Similarity=0.316 Sum_probs=75.3
Q ss_pred hHHHHHHHHHHcCCCEEEeeeccCcccCCCCCC--------HHHHhhcccC----C-CCCeeEEEeccCcccchHHHHhc
Q 025927 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIG--------PLVVDALRPV----T-DLPLDVHLMIVEPEQRVPDFIKA 137 (246)
Q Consensus 71 ~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfg--------p~~I~~ir~~----t-~~plDvHLMV~~P~~~i~~~~~a 137 (246)
.+.+++++|+++|++||.+|==- ++-.+... ...++.++.. . +..+.+|+.-.+=...++.+.+.
T Consensus 576 a~~~ev~~L~~aG~~~IQIDEPa--L~~~l~~~~~~~~~~l~~a~~~~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l 653 (750)
T TIGR01371 576 AIRDEVLDLEEAGIKIIQIDEPA--LREGLPLRKSDWPEYLDWAVEAFRLATSGVKDETQIHTHMCYSEFNEIIESIADL 653 (750)
T ss_pred HHHHHHHHHHHcCCCEEEEeCch--hhhcCCccchhHHHHHHHHHHHHHHHHhCCCCCCEEEEEEECCCcHHHHHHHHhC
Confidence 45689999999999999999322 22222211 1334555431 1 34567777766655667888888
Q ss_pred CCCEEEEccCCcccccHHHHHHHHHH-cC----CcEEEEEcCC---CChHHHHHhhhh-cceE--EEEeecC--CCCCCc
Q 025927 138 GADIVSVHCEQSSTIHLHRTLNQIKD-LG----AKAGVVLNPA---TSLSAIECVLDV-VDLV--LIMSVNP--GFGGQS 204 (246)
Q Consensus 138 gad~It~H~E~~~~~~~~~~i~~Ik~-~G----~k~GlAlnP~---Tpve~l~~~l~~-vD~V--LvMsV~P--GfgGQ~ 204 (246)
.+|.+++-... .+ .+.+..+++ .+ +-+||.=--+ .+++.+...|.. ..++ -=+.|+| |+.-.+
T Consensus 654 ~vD~i~lE~~r---~~-~e~L~~~~~~~~~~~~ig~GVvD~~s~~ve~~eei~~~i~~a~~~i~~erl~vsPdCGL~tr~ 729 (750)
T TIGR01371 654 DADVISIEASR---SD-MELLSAFKNGFGYPNGIGPGVYDIHSPRVPSVEEMADLIEKALQVLPAERLWVNPDCGLKTRN 729 (750)
T ss_pred CCCEEEEEecC---CC-hhHHHHhhhhcccCCeEEEEEEeCCCCCcCCHHHHHHHHHHHHHhcCcceEEEeCCCCCCcCC
Confidence 99998876432 11 245555554 22 3334332211 223444443332 1212 2355677 443332
Q ss_pred ccHHHHHHHHHHHHH
Q 025927 205 FIESQVKKISDLRRM 219 (246)
Q Consensus 205 F~~~~l~KI~~lr~l 219 (246)
.+++..|++.+.+.
T Consensus 730 -~~~~~~~L~~mv~a 743 (750)
T TIGR01371 730 -WEEVIASLKNMVEA 743 (750)
T ss_pred -HHHHHHHHHHHHHH
Confidence 34455666555443
No 303
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=79.65 E-value=1.5 Score=42.94 Aligned_cols=103 Identities=18% Similarity=0.246 Sum_probs=73.6
Q ss_pred ChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccC---cccchHHHHhcCCCEEEE
Q 025927 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVE---PEQRVPDFIKAGADIVSV 144 (246)
Q Consensus 68 D~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~---P~~~i~~~~~agad~It~ 144 (246)
+.....+..++|.+.|+|+|-+-=|-|--.|+-.+ +.|+.||+.+++|+.+|--..- +-.|+ +-++||+|+|--
T Consensus 154 t~e~yv~~akel~~~g~DSIciKDmaGlltP~~ay--elVk~iK~~~~~pv~lHtH~TsG~a~m~yl-kAvEAGvD~iDT 230 (472)
T COG5016 154 TLEYYVELAKELLEMGVDSICIKDMAGLLTPYEAY--ELVKAIKKELPVPVELHTHATSGMAEMTYL-KAVEAGVDGIDT 230 (472)
T ss_pred cHHHHHHHHHHHHHcCCCEEEeecccccCChHHHH--HHHHHHHHhcCCeeEEecccccchHHHHHH-HHHHhCcchhhh
Confidence 44455567788899999999999999999998765 6999999999998888865442 33455 337899997744
Q ss_pred ccCCc----ccccHHHHHHHHHHcCCcEEEEEc
Q 025927 145 HCEQS----STIHLHRTLNQIKDLGAKAGVVLN 173 (246)
Q Consensus 145 H~E~~----~~~~~~~~i~~Ik~~G~k~GlAln 173 (246)
-.-.. +....+.+...++..|...|+-+.
T Consensus 231 Aisp~S~gtsqP~tEtmv~aL~gt~yDtgld~~ 263 (472)
T COG5016 231 AISPLSGGTSQPATETMVAALRGTGYDTGLDLE 263 (472)
T ss_pred hhccccCCCCCCcHHHHHHHhcCCCCCccccHH
Confidence 33221 223345666777777877777554
No 304
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=79.60 E-value=29 Score=33.00 Aligned_cols=168 Identities=18% Similarity=0.201 Sum_probs=90.8
Q ss_pred CcEEeeeeccc--ChhhHHHHHHHHHHcCCCEEEeeeccCcccCCC-CCCHHHHhhcccCCCCCeeEEEeccCcc----c
Q 025927 57 DIIVSPSILSA--NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNI-TIGPLVVDALRPVTDLPLDVHLMIVEPE----Q 129 (246)
Q Consensus 57 ~~~IsPSIl~a--D~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~-tfgp~~I~~ir~~t~~plDvHLMV~~P~----~ 129 (246)
.+.|+|.=+.. ...--....+...++|+-+. ++.. +-..+.|.+-. -.+.++=+.|.+..-. .
T Consensus 66 Pi~iaP~~~~~~~~~~ge~~~AraA~~~gi~~~---------lss~s~~s~e~v~~~~-~~~~~~w~Qly~~~d~~~~~~ 135 (344)
T cd02922 66 PFFISPAALAKLAHPDGELNLARAAGKHGILQM---------ISTNASCSLEEIVDAR-PPDQPLFFQLYVNKDRTKTEE 135 (344)
T ss_pred ceeeChHHHhhhCCchHHHHHHHHHHHcCCCEE---------ecCcccCCHHHHHHhc-CCCCcEEEEEeecCCHHHHHH
Confidence 67888877433 12111233455566665432 2222 12333333211 1134555666664332 3
Q ss_pred chHHHHhcCCCEEEEccCCccc-----------------------------------------ccHHHHHHHHHHcCCcE
Q 025927 130 RVPDFIKAGADIVSVHCEQSST-----------------------------------------IHLHRTLNQIKDLGAKA 168 (246)
Q Consensus 130 ~i~~~~~agad~It~H~E~~~~-----------------------------------------~~~~~~i~~Ik~~G~k~ 168 (246)
.++...++|++-+.+|+.+... ....+.++++|+.. +.
T Consensus 136 l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~ 214 (344)
T cd02922 136 LLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFIDPTLTWDDIKWLRKHT-KL 214 (344)
T ss_pred HHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHHHHHhhccCCCCCHHHHHHHHHhc-CC
Confidence 4445556899999999875200 01124566777544 45
Q ss_pred EEEEcCCCChHHHHHhhhh-cceEEEEeecCCCCCC-cccHHHHHHHHHHHHHHHhcCCCCeEEEeCCCChh
Q 025927 169 GVVLNPATSLSAIECVLDV-VDLVLIMSVNPGFGGQ-SFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPK 238 (246)
Q Consensus 169 GlAlnP~Tpve~l~~~l~~-vD~VLvMsV~PGfgGQ-~F~~~~l~KI~~lr~l~~~~~~~~~I~VDGGI~~e 238 (246)
-|.++--+..++.+...+. +|.|.|- +-| |.| ...+.+++-+.++++...+.+-+..|.+||||...
T Consensus 215 PvivKgv~~~~dA~~a~~~G~d~I~vs--nhg-G~~~d~~~~~~~~L~~i~~~~~~~~~~~~vi~~GGIr~G 283 (344)
T cd02922 215 PIVLKGVQTVEDAVLAAEYGVDGIVLS--NHG-GRQLDTAPAPIEVLLEIRKHCPEVFDKIEVYVDGGVRRG 283 (344)
T ss_pred cEEEEcCCCHHHHHHHHHcCCCEEEEE--CCC-cccCCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCCH
Confidence 5666666677777776654 8998885 333 222 12233444455556655444445779999999754
No 305
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=79.59 E-value=4.7 Score=34.99 Aligned_cols=62 Identities=10% Similarity=0.218 Sum_probs=41.8
Q ss_pred CCCChHHHHHhhhh-cceEEEEeecCCCCCCcccHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCh-hhhhhc
Q 025927 174 PATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP-KNAYKV 243 (246)
Q Consensus 174 P~Tpve~l~~~l~~-vD~VLvMsV~PGfgGQ~F~~~~l~KI~~lr~l~~~~~~~~~I~VDGGI~~-e~i~~l 243 (246)
...|++..+.|.+. +|.+.|...+..+.|+..+.+.+++|++ .. +..++++|||+. +.++++
T Consensus 28 ~~dp~~~a~~~~~~g~d~l~v~dl~~~~~~~~~~~~~i~~i~~---~~-----~~pv~~~GgI~~~e~~~~~ 91 (234)
T cd04732 28 SDDPVEVAKKWEEAGAKWLHVVDLDGAKGGEPVNLELIEEIVK---AV-----GIPVQVGGGIRSLEDIERL 91 (234)
T ss_pred CCCHHHHHHHHHHcCCCEEEEECCCccccCCCCCHHHHHHHHH---hc-----CCCEEEeCCcCCHHHHHHH
Confidence 34566666555443 7888888888778888888777766644 21 346999999976 555544
No 306
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=79.53 E-value=12 Score=34.69 Aligned_cols=113 Identities=14% Similarity=0.237 Sum_probs=62.0
Q ss_pred cChhhHHHHHHHHHHcCCCEEEeeeccCcccC-------C---CCCC-HHHHhhc---cc---CCCCCeeEE----Eec-
Q 025927 67 ANFAKLGEQVKAVELAGCDWIHVDVMDGRFVP-------N---ITIG-PLVVDAL---RP---VTDLPLDVH----LMI- 124 (246)
Q Consensus 67 aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVp-------N---~tfg-p~~I~~i---r~---~t~~plDvH----LMV- 124 (246)
.|+.++.+.+++++++|+.-+|+. |..|-+ . .... .+.++.| +. -.++++-+. +..
T Consensus 89 g~~~~v~r~V~~l~~aGvaGi~iE--Dq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~ 166 (285)
T TIGR02320 89 GNFEHFRRLVRKLERRGVSAVCIE--DKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVESLILGK 166 (285)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEe--ccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEecccccccC
Confidence 688999999999999999999982 333311 0 1111 1223333 22 123444444 221
Q ss_pred --cCcccchHHHHhcCCCEEEEcc-CCcccccHHHHHHHHHHc--CCcEEEEEcC----CCChHHHHHh
Q 025927 125 --VEPEQRVPDFIKAGADIVSVHC-EQSSTIHLHRTLNQIKDL--GAKAGVVLNP----ATSLSAIECV 184 (246)
Q Consensus 125 --~~P~~~i~~~~~agad~It~H~-E~~~~~~~~~~i~~Ik~~--G~k~GlAlnP----~Tpve~l~~~ 184 (246)
++-.+-.+.|.++|||.|.++. -. +.+++.++.+.++.. .... .++| .+++++|.++
T Consensus 167 ~~~eAi~Ra~ay~eAGAD~ifv~~~~~-~~~ei~~~~~~~~~~~p~~pl--~~~~~~~~~~~~~eL~~l 232 (285)
T TIGR02320 167 GMEDALKRAEAYAEAGADGIMIHSRKK-DPDEILEFARRFRNHYPRTPL--VIVPTSYYTTPTDEFRDA 232 (285)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCCC-CHHHHHHHHHHhhhhCCCCCE--EEecCCCCCCCHHHHHHc
Confidence 2223345678899999999983 21 233455555554420 1122 3333 4566666665
No 307
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=79.45 E-value=6.1 Score=36.42 Aligned_cols=74 Identities=14% Similarity=0.100 Sum_probs=37.6
Q ss_pred ChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCC-CCCeeEEEeccCcccchHHH--HhcCCCEEE
Q 025927 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVT-DLPLDVHLMIVEPEQRVPDF--IKAGADIVS 143 (246)
Q Consensus 68 D~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t-~~plDvHLMV~~P~~~i~~~--~~agad~It 143 (246)
|+..+.+.++++.++|+|.|-+==+-|.-.|.-. .+.++.+|+.. +.++.+|.=-..=......+ .++|+++|-
T Consensus 153 ~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~v--~~lv~~l~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aG~~~id 229 (287)
T PRK05692 153 PPEAVADVAERLFALGCYEISLGDTIGVGTPGQV--RAVLEAVLAEFPAERLAGHFHDTYGQALANIYASLEEGITVFD 229 (287)
T ss_pred CHHHHHHHHHHHHHcCCcEEEeccccCccCHHHH--HHHHHHHHHhCCCCeEEEEecCCCCcHHHHHHHHHHhCCCEEE
Confidence 5666777777777777776655444444444311 12344444432 35666666443333222222 446666654
No 308
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=79.32 E-value=30 Score=31.62 Aligned_cols=115 Identities=10% Similarity=0.120 Sum_probs=84.9
Q ss_pred ChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccC-CCCCeeEEE---eccCcccchHHHHhcCCCEEE
Q 025927 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHL---MIVEPEQRVPDFIKAGADIVS 143 (246)
Q Consensus 68 D~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~-t~~plDvHL---MV~~P~~~i~~~~~agad~It 143 (246)
++.-+.++|+...++|++-+=+=.-+ ++=.+..+.++.|.+. .++++..|. |+.||...++.+++.|+.+|-
T Consensus 71 E~~iM~~DI~~~~~lG~~GVV~G~lt----~dg~iD~~~le~Li~aA~gL~vTFHrAFD~~~d~~~ale~li~~Gv~RIL 146 (241)
T COG3142 71 ELEIMLEDIRLARELGVQGVVLGALT----ADGNIDMPRLEKLIEAAGGLGVTFHRAFDECPDPLEALEQLIELGVERIL 146 (241)
T ss_pred HHHHHHHHHHHHHHcCCCcEEEeeec----CCCccCHHHHHHHHHHccCCceeeehhhhhcCCHHHHHHHHHHCCCcEEe
Confidence 44567789999999999988776554 4455666778877664 568888897 677999999999999999999
Q ss_pred EccCCc-ccccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhh
Q 025927 144 VHCEQS-STIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD 186 (246)
Q Consensus 144 ~H~E~~-~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~ 186 (246)
-|=-.. +.+...++-++|++.+-++-+...-+...+.+..+..
T Consensus 147 TsGg~~sa~eg~~~l~~li~~a~gri~Im~GaGV~~~N~~~l~~ 190 (241)
T COG3142 147 TSGGKASALEGLDLLKRLIEQAKGRIIIMAGAGVRAENIAELVL 190 (241)
T ss_pred cCCCcCchhhhHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHH
Confidence 885431 1233455666667776677777777777787777744
No 309
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=79.23 E-value=20 Score=31.91 Aligned_cols=119 Identities=10% Similarity=0.067 Sum_probs=70.2
Q ss_pred hHHHHHHHHHHcCCCEEEeeeccCcc-cCCCCCCHHHHhhccc---CCCCCeeE-----EEec----cCcc---------
Q 025927 71 KLGEQVKAVELAGCDWIHVDVMDGRF-VPNITIGPLVVDALRP---VTDLPLDV-----HLMI----VEPE--------- 128 (246)
Q Consensus 71 ~l~~~i~~l~~~g~d~lHiDIMDG~F-VpN~tfgp~~I~~ir~---~t~~plDv-----HLMV----~~P~--------- 128 (246)
.+.+.++.+.++|.+.+-+++-+.+. +....+.+..++.+++ .+++.+.. |.-. .+|.
T Consensus 22 ~~~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 101 (283)
T PRK13209 22 CWLEKLAIAKTAGFDFVEMSVDESDERLARLDWSREQRLALVNALVETGFRVNSMCLSAHRRFPLGSEDDAVRAQALEIM 101 (283)
T ss_pred CHHHHHHHHHHcCCCeEEEecCccccchhccCCCHHHHHHHHHHHHHcCCceeEEecccccccCCCCCCHHHHHHHHHHH
Confidence 57899999999999999998766432 2234566776666655 34555432 2211 1221
Q ss_pred -cchHHHHhcCCCEEEEccCCc----c--------cccHHHHHHHHHHcCCcEEEEEcCCCCh---HHHHHhhhhcc
Q 025927 129 -QRVPDFIKAGADIVSVHCEQS----S--------TIHLHRTLNQIKDLGAKAGVVLNPATSL---SAIECVLDVVD 189 (246)
Q Consensus 129 -~~i~~~~~agad~It~H~E~~----~--------~~~~~~~i~~Ik~~G~k~GlAlnP~Tpv---e~l~~~l~~vD 189 (246)
+.++...+.|+.+|.++.-.. . ...+.++.+..++.|++.++=-.+.+.+ +....+++.++
T Consensus 102 ~~~i~~a~~lG~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~GV~i~iE~~~~~~~~~~~~~~~ll~~v~ 178 (283)
T PRK13209 102 RKAIQLAQDLGIRVIQLAGYDVYYEQANNETRRRFIDGLKESVELASRASVTLAFEIMDTPFMNSISKALGYAHYLN 178 (283)
T ss_pred HHHHHHHHHcCCCEEEECCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeecCCcccCCHHHHHHHHHHhC
Confidence 234555667999999873210 0 1123456666777888777755544443 44444555543
No 310
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=79.07 E-value=9.7 Score=34.95 Aligned_cols=122 Identities=20% Similarity=0.160 Sum_probs=74.7
Q ss_pred ChhhHHHHHHHHHHcCCCEE--EeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEEEc
Q 025927 68 NFAKLGEQVKAVELAGCDWI--HVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVH 145 (246)
Q Consensus 68 D~~~l~~~i~~l~~~g~d~l--HiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It~H 145 (246)
|.....+.++++++.|++.| |+|.-- +.-.+..+.++++++.++.|+-+.- |..+ .....+.++|+|.|++|
T Consensus 127 ~~~~~~~~i~~~~~~g~~~i~l~~~~p~----~~~~~~~~~i~~l~~~~~~pvivK~-v~s~-~~a~~a~~~G~d~I~v~ 200 (299)
T cd02809 127 DREITEDLLRRAEAAGYKALVLTVDTPV----LGRRLTWDDLAWLRSQWKGPLILKG-ILTP-EDALRAVDAGADGIVVS 200 (299)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCC----CCCCCCHHHHHHHHHhcCCCEEEee-cCCH-HHHHHHHHCCCCEEEEc
Confidence 77888888999999999954 555442 1122556899999998888887763 3333 44678889999999996
Q ss_pred cCCc----ccccHHHHHHHHHHc-CCcEEEEEcCC--CChHHHHHhhhhcceEEEEe
Q 025927 146 CEQS----STIHLHRTLNQIKDL-GAKAGVVLNPA--TSLSAIECVLDVVDLVLIMS 195 (246)
Q Consensus 146 ~E~~----~~~~~~~~i~~Ik~~-G~k~GlAlnP~--Tpve~l~~~l~~vD~VLvMs 195 (246)
--.- ........+..+++. +-++=|..+=+ ++.+.++.+.--+|.|.+=+
T Consensus 201 ~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lGAd~V~ig~ 257 (299)
T cd02809 201 NHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVLIGR 257 (299)
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEcH
Confidence 3210 011223456666542 21233444433 34444444444488877743
No 311
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=79.02 E-value=4.4 Score=41.42 Aligned_cols=104 Identities=19% Similarity=0.264 Sum_probs=71.8
Q ss_pred cChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchH--HHHhcCCCEEEE
Q 025927 67 ANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVP--DFIKAGADIVSV 144 (246)
Q Consensus 67 aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~--~~~~agad~It~ 144 (246)
-++..+.+.++++++.|+|.|-+==|=|...|.-.. +.+++||+..++|+++|.=-..=..... .-+++|||+|-.
T Consensus 151 ~t~e~~~~~ak~l~~~Gad~I~IkDtaG~l~P~~v~--~lv~alk~~~~ipi~~H~Hnt~Gla~an~laAieaGad~iD~ 228 (596)
T PRK14042 151 HTLDNFLELGKKLAEMGCDSIAIKDMAGLLTPTVTV--ELYAGLKQATGLPVHLHSHSTSGLASICHYEAVLAGCNHIDT 228 (596)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCcccCCCHHHHH--HHHHHHHhhcCCEEEEEeCCCCCcHHHHHHHHHHhCCCEEEe
Confidence 456677788899999999999887677777775433 4677888877889999876443332222 236789998765
Q ss_pred ccCCc----ccccHHHHHHHHHHcCCcEEEEE
Q 025927 145 HCEQS----STIHLHRTLNQIKDLGAKAGVVL 172 (246)
Q Consensus 145 H~E~~----~~~~~~~~i~~Ik~~G~k~GlAl 172 (246)
=.-.. +....+.++..++..|...|+-+
T Consensus 229 ai~glGg~tGn~~tE~lv~~L~~~g~~tgidl 260 (596)
T PRK14042 229 AISSFSGGASHPPTEALVAALTDTPYDTELDL 260 (596)
T ss_pred ccccccCCCCcHhHHHHHHHHHhcCCCCCCCH
Confidence 54332 23346677888888887776643
No 312
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=78.93 E-value=9.1 Score=34.16 Aligned_cols=130 Identities=12% Similarity=0.044 Sum_probs=74.7
Q ss_pred hhHHHHHHHHHHcCCCEEEeeeccCcccC-CCCCCHHHHhhcccC---CCCCee-----EE----EeccCcc--------
Q 025927 70 AKLGEQVKAVELAGCDWIHVDVMDGRFVP-NITIGPLVVDALRPV---TDLPLD-----VH----LMIVEPE-------- 128 (246)
Q Consensus 70 ~~l~~~i~~l~~~g~d~lHiDIMDG~FVp-N~tfgp~~I~~ir~~---t~~plD-----vH----LMV~~P~-------- 128 (246)
.-+++.++.+.+.|.+++-+.+-+.+.-+ .+.+.+..++++++. .++.+. .| +...+|.
T Consensus 16 ~~~~e~l~~~~~~G~~~VEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~~~~~l~~~~~~~r~~~~~~ 95 (279)
T TIGR00542 16 ECWLERLQLAKTCGFDFVEMSVDETDDRLSRLDWSREQRLALVNAIIETGVRIPSMCLSAHRRFPLGSKDKAVRQQGLEI 95 (279)
T ss_pred CCHHHHHHHHHHcCCCEEEEecCCccchhhccCCCHHHHHHHHHHHHHcCCCceeeecCCCccCcCCCcCHHHHHHHHHH
Confidence 56788999999999999999765543322 245667777766542 344432 11 2233453
Q ss_pred --cchHHHHhcCCCEEEEccCCc-----c-------cccHHHHHHHHHHcCCcEEEEEcCC---CChHHHHHhhhhcce-
Q 025927 129 --QRVPDFIKAGADIVSVHCEQS-----S-------TIHLHRTLNQIKDLGAKAGVVLNPA---TSLSAIECVLDVVDL- 190 (246)
Q Consensus 129 --~~i~~~~~agad~It~H~E~~-----~-------~~~~~~~i~~Ik~~G~k~GlAlnP~---Tpve~l~~~l~~vD~- 190 (246)
+.++...+.|+++|.++.-.. . ...+.++....++.|++.++=-.+. .+......+++.+|-
T Consensus 96 ~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~~~~~~~~t~~~~~~li~~v~~~ 175 (279)
T TIGR00542 96 MEKAIQLARDLGIRTIQLAGYDVYYEEHDEETRRRFREGLKEAVELAARAQVTLAVEIMDTPFMSSISKWLKWDHYLNSP 175 (279)
T ss_pred HHHHHHHHHHhCCCEEEecCcccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEEeeCCCchhcCHHHHHHHHHHcCCC
Confidence 344455667999999985210 0 1124456667778888888754322 223444455655542
Q ss_pred EEEEeecCC
Q 025927 191 VLIMSVNPG 199 (246)
Q Consensus 191 VLvMsV~PG 199 (246)
=+-+..++|
T Consensus 176 ~v~~~~D~~ 184 (279)
T TIGR00542 176 WFTLYPDIG 184 (279)
T ss_pred ceEEEeCcC
Confidence 123445565
No 313
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=78.84 E-value=7.1 Score=36.18 Aligned_cols=79 Identities=18% Similarity=0.306 Sum_probs=50.6
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhhh-cceEEEEeecCCCCCCcccHHHHHHHHHHHHHHHhcC--CCCeEE
Q 025927 154 LHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKG--VNPWIE 230 (246)
Q Consensus 154 ~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~~-vD~VLvMsV~PGfgGQ~F~~~~l~KI~~lr~l~~~~~--~~~~I~ 230 (246)
+.+.++.+|+.....=+.+-.+ +++.+...++. +|.|++= +|.|+.++++ .+++.+.+ .++.|+
T Consensus 169 i~~av~~~r~~~~~~kIeVEv~-~leea~~a~~agaDiI~LD---------n~~~e~l~~~---v~~l~~~~~~~~~~le 235 (278)
T PRK08385 169 LEEAIRRAKEFSVYKVVEVEVE-SLEDALKAAKAGADIIMLD---------NMTPEEIREV---IEALKREGLRERVKIE 235 (278)
T ss_pred HHHHHHHHHHhCCCCcEEEEeC-CHHHHHHHHHcCcCEEEEC---------CCCHHHHHHH---HHHHHhcCcCCCEEEE
Confidence 5677888887652222444444 56666666665 8988773 2345555544 44444433 357899
Q ss_pred EeCCCChhhhhhccc
Q 025927 231 VDGGVGPKNAYKVPN 245 (246)
Q Consensus 231 VDGGI~~e~i~~l~~ 245 (246)
+=||||.+|++++++
T Consensus 236 aSGGI~~~ni~~yA~ 250 (278)
T PRK08385 236 VSGGITPENIEEYAK 250 (278)
T ss_pred EECCCCHHHHHHHHH
Confidence 999999999998754
No 314
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=78.66 E-value=30 Score=29.42 Aligned_cols=113 Identities=21% Similarity=0.256 Sum_probs=65.3
Q ss_pred HHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcc---cchHHHHhcCCCEEEEccCCc--
Q 025927 75 QVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPE---QRVPDFIKAGADIVSVHCEQS-- 149 (246)
Q Consensus 75 ~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~---~~i~~~~~agad~It~H~E~~-- 149 (246)
+++.+.++|+|++=+....+ +.+ -.++++.++++ ++++-+ -+.+|. ..+..+.+.|+|+|+++....
T Consensus 68 ~~~~~~~~Gad~i~vh~~~~----~~~-~~~~i~~~~~~-g~~~~~--~~~~~~t~~~~~~~~~~~g~d~v~~~pg~~~~ 139 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVAD----DAT-IKGAVKAAKKH-GKEVQV--DLINVKDKVKRAKELKELGADYIGVHTGLDEQ 139 (206)
T ss_pred HHHHHHHcCCCEEEEeccCC----HHH-HHHHHHHHHHc-CCEEEE--EecCCCChHHHHHHHHHcCCCEEEEcCCcCcc
Confidence 68888999999986654432 111 14567777764 554433 223554 444556778999999986321
Q ss_pred c-cccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhhh-cceEEEEe
Q 025927 150 S-TIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV-VDLVLIMS 195 (246)
Q Consensus 150 ~-~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~~-vD~VLvMs 195 (246)
. .....+-++.+++.--.+=+++--+-..+.+.++++. +|.+.+-+
T Consensus 140 ~~~~~~~~~i~~l~~~~~~~~i~v~GGI~~~n~~~~~~~Ga~~v~vGs 187 (206)
T TIGR03128 140 AKGQNPFEDLQTILKLVKEARVAVAGGINLDTIPDVIKLGPDIVIVGG 187 (206)
T ss_pred cCCCCCHHHHHHHHHhcCCCcEEEECCcCHHHHHHHHHcCCCEEEEee
Confidence 0 0111223444443221233554567777888888865 78776643
No 315
>TIGR03332 salvage_mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Members of this family are the methionine salvage pathway enzyme 2,3-diketo-5-methylthiopentyl-1-phosphate enolase, a homolog of RuBisCO. This protein family seems restricted to Bacillus subtilis and close relatives, where two separate proteins carry the enolase and phosphatase activities that in other species occur in a single protein, MtnC (TIGR01691).
Probab=78.56 E-value=2.9 Score=40.76 Aligned_cols=117 Identities=17% Similarity=0.159 Sum_probs=79.8
Q ss_pred cceeccccCCCCCCceeccccceeeeeeccccccCCCCCcEEeeeecccChhhHHHHHHHHHHcCCCEEEeeeccCcccC
Q 025927 19 GFMLQKTNLNQPSSLSFTRRRIQTIVKASARVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVP 98 (246)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IsPSIl~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVp 98 (246)
++...+-++..|+...+ +.|++.+..|-.|..+-...+..-+|-|- ++..++.+..+.+.+.|++.+.+|++=
T Consensus 170 D~IKDDE~l~dq~~~p~-~~Rv~~~~~a~~~a~~eTG~~~~y~~NiT-~~~~em~~ra~~a~~~G~~~~mv~~~~----- 242 (407)
T TIGR03332 170 DLVKDDEILFETGLAPF-EKRITEGKEVLQEVYEQTGHKTLYAVNLT-GRTFDLKDKAKRAAELGADVLLFNVFA----- 242 (407)
T ss_pred ccccCCCCCCCCCCCCH-HHHHHHHHHHHHHHHHHHCCcceEeecCC-CCHHHHHHHHHHHHHhCCCEEEEeccc-----
Confidence 66666777766655554 45566666665555544443455555554 777889999999999999999999753
Q ss_pred CCCCCHHHHhhccc--CCCCCeeEEE-----eccCccc-------chHHHHhcCCCEEEEc
Q 025927 99 NITIGPLVVDALRP--VTDLPLDVHL-----MIVEPEQ-------RVPDFIKAGADIVSVH 145 (246)
Q Consensus 99 N~tfgp~~I~~ir~--~t~~plDvHL-----MV~~P~~-------~i~~~~~agad~It~H 145 (246)
.|...++.|++ ..++|+..|- ++..|.. +-+.+.-+|+|.+.+.
T Consensus 243 ---~G~~~~~~l~~~~~~~lpihaHra~~ga~~r~~~~Gis~~~~l~kl~RLaGaD~~~~~ 300 (407)
T TIGR03332 243 ---YGLDVLQSLAEDDEIPVPIMAHPAVSGAYTSSPFYGFSHSLLLGKLLRYAGADFSLFP 300 (407)
T ss_pred ---cChHHHHHHHhcCCCCcEEEEecCcccccccCCCCcccHHHHHHHHHHhcCcCccccC
Confidence 45567888877 4578899984 4555552 2233355899998886
No 316
>PRK15492 triosephosphate isomerase; Provisional
Probab=78.50 E-value=21 Score=32.72 Aligned_cols=115 Identities=13% Similarity=0.115 Sum_probs=70.6
Q ss_pred hHHHHhcCCCEEEE-ccCCc-----ccccHHHHHHHHHHcCCcEEEEEcCCCC-------h----HHHHHhhhhcc----
Q 025927 131 VPDFIKAGADIVSV-HCEQS-----STIHLHRTLNQIKDLGAKAGVVLNPATS-------L----SAIECVLDVVD---- 189 (246)
Q Consensus 131 i~~~~~agad~It~-H~E~~-----~~~~~~~~i~~Ik~~G~k~GlAlnP~Tp-------v----e~l~~~l~~vD---- 189 (246)
.+.+.++|++++.+ |.|-= +...+.+-++...++|+.+=+.+.-... . ..++..|..++
T Consensus 87 a~mLkd~G~~~viiGHSERR~~f~Etd~~v~~Kv~~a~~~gl~pIvCiGE~~e~r~~g~~~~v~~~Ql~~~l~~~~~~~~ 166 (260)
T PRK15492 87 PLMLKEIGTQLVMIGHSERRHKFGETDQEENAKVLAALKHDFTTLLCVGETLEQKNYGISDEILRTQLKIGLHGINPDQL 166 (260)
T ss_pred HHHHHHcCCCEEEECccccccccCcchHHHHHHHHHHHHCCCEEEEEcCCcHHHHHcCCHHHHHHHHHHHHHhcCCHhhc
Confidence 45678889886654 55520 1233455666778899998877763211 1 12333443332
Q ss_pred eEEEEeecC----CCCCCcccH----HHHHHHHHH-HHHHHhcCCCCeEEEeCCCChhhhhhccc
Q 025927 190 LVLIMSVNP----GFGGQSFIE----SQVKKISDL-RRMCLEKGVNPWIEVDGGVGPKNAYKVPN 245 (246)
Q Consensus 190 ~VLvMsV~P----GfgGQ~F~~----~~l~KI~~l-r~l~~~~~~~~~I~VDGGI~~e~i~~l~~ 245 (246)
-=+++.-|| |-||.+-.+ ++.+.||+. .+++.+..-+..|.-=||||++|+.++..
T Consensus 167 ~~iiIAYEPvWAIGtgg~~as~e~~~~~~~~Ir~~l~~~~~~~~~~irILYGGSV~~~N~~~l~~ 231 (260)
T PRK15492 167 AKLRIAYEPVWAIGEAGIPASADYADEKHAVIKQCLIELFGDAGDDIPVFYGGSVNAENANELFG 231 (260)
T ss_pred CceEEEECChHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhccccCceeEEEcCccCHHHHHHHhc
Confidence 136788899 555776666 566666653 44443323357899999999999998753
No 317
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=78.44 E-value=15 Score=35.21 Aligned_cols=103 Identities=17% Similarity=0.305 Sum_probs=62.7
Q ss_pred ccchHHHHhcCCCEEEEccCCcccccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhhh-cceEEEEeecCCCC-----
Q 025927 128 EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV-VDLVLIMSVNPGFG----- 201 (246)
Q Consensus 128 ~~~i~~~~~agad~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~~-vD~VLvMsV~PGfg----- 201 (246)
...++.++++|+|.|.+..-....++..+.+++||+.--++-|....=..-+..+.+++. +|.|.| .+=||-.
T Consensus 110 ~er~~~L~~agvD~ivID~a~g~s~~~~~~ik~ik~~~~~~~viaGNV~T~e~a~~L~~aGad~vkV-GiGpGsiCtTr~ 188 (352)
T PF00478_consen 110 FERAEALVEAGVDVIVIDSAHGHSEHVIDMIKKIKKKFPDVPVIAGNVVTYEGAKDLIDAGADAVKV-GIGPGSICTTRE 188 (352)
T ss_dssp HHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHHHHHHHSTTSEEEEEEE-SHHHHHHHHHTT-SEEEE-SSSSSTTBHHHH
T ss_pred HHHHHHHHHcCCCEEEccccCccHHHHHHHHHHHHHhCCCceEEecccCCHHHHHHHHHcCCCEEEE-eccCCccccccc
Confidence 356778899999999996443223566778888887765666665555556777777665 888654 4445531
Q ss_pred ----CCcccHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCh
Q 025927 202 ----GQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP 237 (246)
Q Consensus 202 ----GQ~F~~~~l~KI~~lr~l~~~~~~~~~I~VDGGI~~ 237 (246)
|.+. +--|.+..+.+.+ +...|..||||+.
T Consensus 189 v~GvG~PQ----~tAv~~~a~~a~~--~~v~iIADGGi~~ 222 (352)
T PF00478_consen 189 VTGVGVPQ----LTAVYECAEAARD--YGVPIIADGGIRT 222 (352)
T ss_dssp HHSBSCTH----HHHHHHHHHHHHC--TTSEEEEESS-SS
T ss_pred ccccCCcH----HHHHHHHHHHhhh--ccCceeecCCcCc
Confidence 4443 3334444444433 3567999999975
No 318
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=78.39 E-value=52 Score=29.75 Aligned_cols=146 Identities=16% Similarity=0.165 Sum_probs=89.1
Q ss_pred HHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEEE-ccCCcccccH
Q 025927 76 VKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSV-HCEQSSTIHL 154 (246)
Q Consensus 76 i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It~-H~E~~~~~~~ 154 (246)
.+.+-.+|.||+=+|.-=|.|-.. ++ ...+.+++. .+.+.-|=+=..+| ..+....++|++-|.+ |+|+ .++.
T Consensus 26 ~e~~a~~G~D~v~iD~EHg~~~~~-~~-~~~~~a~~~-~g~~~~VRvp~~~~-~~i~r~LD~Ga~gIivP~v~t--aeea 99 (249)
T TIGR03239 26 TEVLGLAGFDWLLLDGEHAPNDVL-TF-IPQLMALKG-SASAPVVRPPWNEP-VIIKRLLDIGFYNFLIPFVES--AEEA 99 (249)
T ss_pred HHHHHhcCCCEEEEecccCCCCHH-HH-HHHHHHHhh-cCCCcEEECCCCCH-HHHHHHhcCCCCEEEecCcCC--HHHH
Confidence 455667899999999998866321 11 223333332 23332222222233 3577888999996655 5664 3455
Q ss_pred HHHHH--------------------------HHHHcCCcEEEEEcCCCCh--HHHHHhh--hhcceEEE----EeecCCC
Q 025927 155 HRTLN--------------------------QIKDLGAKAGVVLNPATSL--SAIECVL--DVVDLVLI----MSVNPGF 200 (246)
Q Consensus 155 ~~~i~--------------------------~Ik~~G~k~GlAlnP~Tpv--e~l~~~l--~~vD~VLv----MsV~PGf 200 (246)
.++.+ +.+..+-...+...-+|+- +.+++++ +-+|.|.+ ++..=|.
T Consensus 100 ~~~v~a~kypP~G~Rg~~~~~r~~~y~~~~~y~~~~n~~~~vi~~IEt~~av~n~~eI~av~gvd~l~iG~~DLs~slG~ 179 (249)
T TIGR03239 100 ERAVAATRYPPEGIRGVSVSHRSNRYGTVPDYFATINDNITVLVQIESQKGVDNVDEIAAVDGVDGIFVGPSDLAAALGH 179 (249)
T ss_pred HHHHHHcCCCCCCcCCCCcchhhhccCChHHHHHHhccccEEEEEECCHHHHHhHHHHhCCCCCCEEEEChHHHHHHcCC
Confidence 55543 3333343444555556554 7777776 44787777 3444477
Q ss_pred CCCcccHHHHHHHHHHHHHHHhcCCCC
Q 025927 201 GGQSFIESQVKKISDLRRMCLEKGVNP 227 (246)
Q Consensus 201 gGQ~F~~~~l~KI~~lr~l~~~~~~~~ 227 (246)
.|+...|++.+-++++.+...+.|...
T Consensus 180 ~~~~~~~~v~~a~~~v~~aa~a~G~~~ 206 (249)
T TIGR03239 180 LGNPNHPDVQKAIRHIFDRAAAHGKPC 206 (249)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCE
Confidence 788888999999988888888887654
No 319
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=78.15 E-value=4.3 Score=39.65 Aligned_cols=128 Identities=20% Similarity=0.169 Sum_probs=70.4
Q ss_pred CcEEeeeecccChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccC-CCCCeeEEEeccCcccchHHHH
Q 025927 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFI 135 (246)
Q Consensus 57 ~~~IsPSIl~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~-t~~plDvHLMV~~P~~~i~~~~ 135 (246)
+.++...+-- .. +..+.++.|.++|+|.|++|..+||= ..-.+.|++||+. .+.++-+ =-|..++. ...+.
T Consensus 212 ~l~V~aav~~-~~-~~~~r~~~L~~aG~d~I~vd~a~g~~----~~~~~~i~~i~~~~~~~~vi~-G~v~t~~~-a~~l~ 283 (450)
T TIGR01302 212 RLIVGAAVGT-RE-FDKERAEALVKAGVDVIVIDSSHGHS----IYVIDSIKEIKKTYPDLDIIA-GNVATAEQ-AKALI 283 (450)
T ss_pred CEEEEEEecC-ch-hHHHHHHHHHHhCCCEEEEECCCCcH----hHHHHHHHHHHHhCCCCCEEE-EeCCCHHH-HHHHH
Confidence 4444444432 21 23466778888999999999999853 2345678888774 3444322 11233333 45778
Q ss_pred hcCCCEEEEc--cC---Cc------ccccH---HHHHHHHHHcCCcEEEEE--cCCCChHHHHHhhhhcceEEEE
Q 025927 136 KAGADIVSVH--CE---QS------STIHL---HRTLNQIKDLGAKAGVVL--NPATSLSAIECVLDVVDLVLIM 194 (246)
Q Consensus 136 ~agad~It~H--~E---~~------~~~~~---~~~i~~Ik~~G~k~GlAl--nP~Tpve~l~~~l~~vD~VLvM 194 (246)
++|+|.|-+- .= .+ ....+ ..+.+..++.|+. +.- .-.||-+..+-+.-=+|.|++=
T Consensus 284 ~aGad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vp--viadGGi~~~~di~kAla~GA~~V~~G 356 (450)
T TIGR01302 284 DAGADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIP--VIADGGIRYSGDIVKALAAGADAVMLG 356 (450)
T ss_pred HhCCCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCCe--EEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 8999988533 21 00 00111 2222333334432 222 2346667666665568888873
No 320
>PRK01261 aroD 3-dehydroquinate dehydratase; Provisional
Probab=77.91 E-value=39 Score=30.30 Aligned_cols=92 Identities=17% Similarity=0.201 Sum_probs=56.0
Q ss_pred cCCCCCcEEeeeecccChhhHHHHHHHHHHcCCCE--EEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCccc
Q 025927 52 KFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDW--IHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQ 129 (246)
Q Consensus 52 ~~~~~~~~IsPSIl~aD~~~l~~~i~~l~~~g~d~--lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~ 129 (246)
..-.+..+|+.++...+...+..+++.+...|+|. +=+|..++ +-++ --.+.++.+++. ++|+-+=+=......
T Consensus 15 ~~g~~~p~Icvpi~~~~~ee~~~~~~~~~~~~aDivE~RlD~l~~-~~~~--~~~~~~~~l~~~-~~p~I~T~R~~~~~~ 90 (229)
T PRK01261 15 VIGNMQPIVVESIFFKDIKEMKERFKTKVLSDKNLYEIRFDLFHD-HSIE--SEPEIISALNEM-DIDYIFTYRGVDARK 90 (229)
T ss_pred EeCCCCcEEEEEeCCCCHHHHHHHHHHhhcCCCCEEEEEeeccCC-CChH--HHHHHHHHHhhc-CCCEEEEEcCCCHHH
Confidence 35556789999999999999999999999889999 56787765 2111 112344444443 444444333322223
Q ss_pred chHHHHhcCCCEEEEccC
Q 025927 130 RVPDFIKAGADIVSVHCE 147 (246)
Q Consensus 130 ~i~~~~~agad~It~H~E 147 (246)
.+....+.++|++=+-++
T Consensus 91 ~l~~a~~~~~d~vDIEl~ 108 (229)
T PRK01261 91 YYETAIDKMPPAVDLDIN 108 (229)
T ss_pred HHHHHHhhCCCEEEEEcc
Confidence 333444445666654443
No 321
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=77.75 E-value=6.4 Score=38.77 Aligned_cols=105 Identities=23% Similarity=0.340 Sum_probs=65.7
Q ss_pred cChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHH--HhcCCCEEEE
Q 025927 67 ANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDF--IKAGADIVSV 144 (246)
Q Consensus 67 aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~--~~agad~It~ 144 (246)
.++..+.+.++++.++|+|.|-+==|=|...|.-. -+.+++||+..++|+++|.=-..=......+ +++||++|-.
T Consensus 151 ~~~~~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v--~~lv~alk~~~~~pi~~H~Hnt~GlA~AN~laAieaGad~vD~ 228 (448)
T PRK12331 151 HTIDYFVKLAKEMQEMGADSICIKDMAGILTPYVA--YELVKRIKEAVTVPLEVHTHATSGIAEMTYLKAIEAGADIIDT 228 (448)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCHHHH--HHHHHHHHHhcCCeEEEEecCCCCcHHHHHHHHHHcCCCEEEe
Confidence 34556667778888888888777656666665433 2467777776678888887544333222222 5789997765
Q ss_pred ccCCc----ccccHHHHHHHHHHcCCcEEEEEc
Q 025927 145 HCEQS----STIHLHRTLNQIKDLGAKAGVVLN 173 (246)
Q Consensus 145 H~E~~----~~~~~~~~i~~Ik~~G~k~GlAln 173 (246)
=+-.. +....+.++..++..|...|+=+.
T Consensus 229 sv~glg~gaGN~~tE~lv~~L~~~g~~tgidl~ 261 (448)
T PRK12331 229 AISPFAGGTSQPATESMVAALQDLGYDTGLDLE 261 (448)
T ss_pred eccccCCCcCCHhHHHHHHHHHhcCCCCCCCHH
Confidence 44322 223456677777777777665433
No 322
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=77.64 E-value=20 Score=33.29 Aligned_cols=102 Identities=17% Similarity=0.162 Sum_probs=61.0
Q ss_pred HHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCC-----CCCeeEEEeccCcccchHHHHhcCCCEEEEccCC
Q 025927 74 EQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVT-----DLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQ 148 (246)
Q Consensus 74 ~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t-----~~plDvHLMV~~P~~~i~~~~~agad~It~H~E~ 148 (246)
+-.+...++|+|.+ |+|...-.++.+.++.+.. +.|+ +-++...|..-++.|.+.|+++|++..-.
T Consensus 173 ~Ra~ay~eAGAD~i--------fv~~~~~~~~ei~~~~~~~~~~~p~~pl-~~~~~~~~~~~~~eL~~lG~~~v~~~~~~ 243 (285)
T TIGR02320 173 KRAEAYAEAGADGI--------MIHSRKKDPDEILEFARRFRNHYPRTPL-VIVPTSYYTTPTDEFRDAGISVVIYANHL 243 (285)
T ss_pred HHHHHHHHcCCCEE--------EecCCCCCHHHHHHHHHHhhhhCCCCCE-EEecCCCCCCCHHHHHHcCCCEEEEhHHH
Confidence 33455668898866 5553334566666664322 4566 33344456666899999999999996432
Q ss_pred c--ccccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhh
Q 025927 149 S--STIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVL 185 (246)
Q Consensus 149 ~--~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l 185 (246)
. +...+..++..+++.|...++ .+.-.+.+++.+++
T Consensus 244 ~~aa~~a~~~~~~~~~~~g~~~~~-~~~~~~~~e~~~~~ 281 (285)
T TIGR02320 244 LRAAYAAMQQVAERILEHGRLVEV-EDKCAPIKEIFRLI 281 (285)
T ss_pred HHHHHHHHHHHHHHHHHcCCcccc-ccccCCHHHHHHhc
Confidence 1 123456677778877764442 22225666666554
No 323
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=77.56 E-value=8.8 Score=31.44 Aligned_cols=82 Identities=13% Similarity=0.188 Sum_probs=59.6
Q ss_pred HHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEecc--CcccchHHHHhcCCCEEEEccCCc
Q 025927 72 LGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIV--EPEQRVPDFIKAGADIVSVHCEQS 149 (246)
Q Consensus 72 l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~--~P~~~i~~~~~agad~It~H~E~~ 149 (246)
.++-++...+.++|.+=+=-+|+.+.+.+ +.+++.|++. +.. ++.+|+- .|..-.+.|.++|.|.+ ||..+
T Consensus 42 ~e~~v~aa~e~~adii~iSsl~~~~~~~~---~~~~~~L~~~-g~~-~i~vivGG~~~~~~~~~l~~~Gvd~~-~~~gt- 114 (132)
T TIGR00640 42 PEEIARQAVEADVHVVGVSSLAGGHLTLV---PALRKELDKL-GRP-DILVVVGGVIPPQDFDELKEMGVAEI-FGPGT- 114 (132)
T ss_pred HHHHHHHHHHcCCCEEEEcCchhhhHHHH---HHHHHHHHhc-CCC-CCEEEEeCCCChHhHHHHHHCCCCEE-ECCCC-
Confidence 44666777888999999988998887664 7788888764 233 6778887 67777788888998876 56663
Q ss_pred ccccHHHHHHHHHH
Q 025927 150 STIHLHRTLNQIKD 163 (246)
Q Consensus 150 ~~~~~~~~i~~Ik~ 163 (246)
++..+++.+++
T Consensus 115 ---~~~~i~~~l~~ 125 (132)
T TIGR00640 115 ---PIPESAIFLLK 125 (132)
T ss_pred ---CHHHHHHHHHH
Confidence 45666666654
No 324
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=77.30 E-value=6.9 Score=35.66 Aligned_cols=19 Identities=32% Similarity=0.372 Sum_probs=10.9
Q ss_pred cChhhHHHHHHHHHHcCCC
Q 025927 67 ANFAKLGEQVKAVELAGCD 85 (246)
Q Consensus 67 aD~~~l~~~i~~l~~~g~d 85 (246)
-|+.++.+.++...+.|..
T Consensus 115 ~~~~~~~~~i~~ak~~G~~ 133 (275)
T cd07937 115 NDVRNLEVAIKAVKKAGKH 133 (275)
T ss_pred ChHHHHHHHHHHHHHCCCe
Confidence 3455566666666666643
No 325
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=77.14 E-value=30 Score=31.56 Aligned_cols=127 Identities=16% Similarity=0.125 Sum_probs=76.3
Q ss_pred ccChhhHHHHHHHHHH-cCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhc--CCCEE
Q 025927 66 SANFAKLGEQVKAVEL-AGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKA--GADIV 142 (246)
Q Consensus 66 ~aD~~~l~~~i~~l~~-~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~a--gad~I 142 (246)
..|...+++.++.+.+ .|++.+=+=-.=|.| .++..+.-.++ ++..++. |---|
T Consensus 20 ~iD~~~~~~li~~l~~~~Gv~gi~v~GstGE~---~~Ls~eEr~~~--------------------~~~~~~~~~~~~~v 76 (293)
T PRK04147 20 QIDEQGLRRLVRFNIEKQGIDGLYVGGSTGEA---FLLSTEEKKQV--------------------LEIVAEEAKGKVKL 76 (293)
T ss_pred CcCHHHHHHHHHHHHhcCCCCEEEECCCcccc---ccCCHHHHHHH--------------------HHHHHHHhCCCCCE
Confidence 4788899999999999 998765433333332 33333333222 2222222 21235
Q ss_pred EEccCCcccccHHHHHHHHHHcCCcEEEEEcCCC---ChHHHH----HhhhhcceEEEEeecCCCCCCcccHHHHHHHHH
Q 025927 143 SVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPAT---SLSAIE----CVLDVVDLVLIMSVNPGFGGQSFIESQVKKISD 215 (246)
Q Consensus 143 t~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~T---pve~l~----~~l~~vD~VLvMsV~PGfgGQ~F~~~~l~KI~~ 215 (246)
.++.-+.++.+..+..++.++.|+.+-+++.|.. +-+.+. .+.+.+|.=+++-=.|++.|..+-++++.++.+
T Consensus 77 iagvg~~~t~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~l~~~f~~va~a~~lPv~iYn~P~~tg~~l~~~~l~~L~~ 156 (293)
T PRK04147 77 IAQVGSVNTAEAQELAKYATELGYDAISAVTPFYYPFSFEEICDYYREIIDSADNPMIVYNIPALTGVNLSLDQFNELFT 156 (293)
T ss_pred EecCCCCCHHHHHHHHHHHHHcCCCEEEEeCCcCCCCCHHHHHHHHHHHHHhCCCCEEEEeCchhhccCCCHHHHHHHhc
Confidence 6666443355666777788888988888888852 113333 333444443333346899999999999887763
No 326
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=77.12 E-value=8.8 Score=35.68 Aligned_cols=75 Identities=16% Similarity=0.280 Sum_probs=47.3
Q ss_pred cHHHHHHHHHHcC---CcEEEEEcCCCChHHHHHhhhh-cceEEEEeecCCCCCCcccHHHHHHHHHHHHHHHhcCCCCe
Q 025927 153 HLHRTLNQIKDLG---AKAGVVLNPATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPW 228 (246)
Q Consensus 153 ~~~~~i~~Ik~~G---~k~GlAlnP~Tpve~l~~~l~~-vD~VLvMsV~PGfgGQ~F~~~~l~KI~~lr~l~~~~~~~~~ 228 (246)
.+.+.++.+|+.. .| +.+-.+ .++++++.++. +|.|++=.. .|+. ++++-+++.. ...
T Consensus 179 ~i~~ai~~~r~~~~~~~k--IeVEv~-tleea~ea~~~gaDiI~LDn~---------s~e~---l~~av~~~~~---~~~ 240 (281)
T PRK06106 179 GVREAIRRARAGVGHLVK--IEVEVD-TLDQLEEALELGVDAVLLDNM---------TPDT---LREAVAIVAG---RAI 240 (281)
T ss_pred cHHHHHHHHHHhCCCCCc--EEEEeC-CHHHHHHHHHcCCCEEEeCCC---------CHHH---HHHHHHHhCC---Cce
Confidence 3567777778663 33 334433 56666666664 999988432 3333 3444444433 245
Q ss_pred EEEeCCCChhhhhhccc
Q 025927 229 IEVDGGVGPKNAYKVPN 245 (246)
Q Consensus 229 I~VDGGI~~e~i~~l~~ 245 (246)
+++=||||.+|++++++
T Consensus 241 leaSGGI~~~ni~~yA~ 257 (281)
T PRK06106 241 TEASGRITPETAPAIAA 257 (281)
T ss_pred EEEECCCCHHHHHHHHh
Confidence 99999999999998754
No 327
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type. This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by this model as well as ones falling within the scope of the MiaB equivalog model.
Probab=77.11 E-value=62 Score=31.19 Aligned_cols=134 Identities=13% Similarity=0.297 Sum_probs=79.9
Q ss_pred cccChhhHHHHHHHHHHcCCCEEEe-eeccCcccCCC--CCCHHHHhhcccCCCCCeeEEEeccCccc---chHHHHhc-
Q 025927 65 LSANFAKLGEQVKAVELAGCDWIHV-DVMDGRFVPNI--TIGPLVVDALRPVTDLPLDVHLMIVEPEQ---RVPDFIKA- 137 (246)
Q Consensus 65 l~aD~~~l~~~i~~l~~~g~d~lHi-DIMDG~FVpN~--tfgp~~I~~ir~~t~~plDvHLMV~~P~~---~i~~~~~a- 137 (246)
-+-++.++-+|++.+.+.|++.+.+ +.-.+.|-.+. .| ++.++.+.++.+ ..-+++...+|.. +.+.++++
T Consensus 160 rsr~~e~Vl~Ei~~l~~~G~~ei~l~g~d~~~yg~d~~~~l-~~Ll~~l~~i~~-~~~ir~~~~~p~~~~~~~~~l~~~~ 237 (420)
T TIGR01578 160 ASYPPEKIVEKARQLVAEGCKEIWITSQDTGAYGRDIGSRL-PELLRLITEIPG-EFRLRVGMMNPKNVLEILDELANVY 237 (420)
T ss_pred ccCCHHHHHHHHHHHHHCCCeEEEEEeeccccccCCCCcCH-HHHHHHHHhCCC-CcEEEEcCCCCCcccccCHHHHHHH
Confidence 3457788889999999999988875 22233331111 11 455666655433 2457888888853 33555443
Q ss_pred ----CCCEEEEccCCcc------------cccHHHHHHHHHHc--CCcEE--EEEc-CCCChHHHHHhhhh-----cceE
Q 025927 138 ----GADIVSVHCEQSS------------TIHLHRTLNQIKDL--GAKAG--VVLN-PATSLSAIECVLDV-----VDLV 191 (246)
Q Consensus 138 ----gad~It~H~E~~~------------~~~~~~~i~~Ik~~--G~k~G--lAln-P~Tpve~l~~~l~~-----vD~V 191 (246)
++.++.+-+|+.+ ..+..+.++.+|+. |+.++ +.+. |+-..+.++..++. .|.+
T Consensus 238 ~~~~~~~~l~iglQSgsd~iL~~m~R~~~~~~~~~~i~~i~~~~~~i~i~~~~IvG~PgET~ed~~~t~~~~~~~~~~~i 317 (420)
T TIGR01578 238 QHEKVYKFLHLPVQSGSDSVLKEMKREYTVSDFEDIVDKFRERFPDLTLSTDIIVGFPTETDDDFEETMELLRKYRPEKI 317 (420)
T ss_pred hcccccCceEeCCccCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEeeEEEeCCCCCHHHHHHHHHHHHHhCCCEE
Confidence 2578888888642 12356778888887 66554 4444 66566666544432 4444
Q ss_pred EE--EeecCCC
Q 025927 192 LI--MSVNPGF 200 (246)
Q Consensus 192 Lv--MsV~PGf 200 (246)
-+ ++..||-
T Consensus 318 ~~~~~~p~pGT 328 (420)
T TIGR01578 318 NITKFSPRPGT 328 (420)
T ss_pred EEEEeeCCCCC
Confidence 44 6666773
No 328
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=77.08 E-value=15 Score=32.11 Aligned_cols=70 Identities=23% Similarity=0.199 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHcCCCEEEe-ee-ccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEEE
Q 025927 71 KLGEQVKAVELAGCDWIHV-DV-MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSV 144 (246)
Q Consensus 71 ~l~~~i~~l~~~g~d~lHi-DI-MDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It~ 144 (246)
+..+.++.+++.|++++|+ |+ .||+.- ..+.+.++++++.+++|+-+-==+.++++.. .+.+.|++.+.+
T Consensus 150 ~~~~~~~~~~~~G~~~i~~~~~~~~g~~~---g~~~~~i~~i~~~~~iPvia~GGI~~~~di~-~~~~~Ga~gv~v 221 (241)
T PRK13585 150 TPVEAAKRFEELGAGSILFTNVDVEGLLE---GVNTEPVKELVDSVDIPVIASGGVTTLDDLR-ALKEAGAAGVVV 221 (241)
T ss_pred CHHHHHHHHHHcCCCEEEEEeecCCCCcC---CCCHHHHHHHHHhCCCCEEEeCCCCCHHHHH-HHHHcCCCEEEE
Confidence 5566677788999999997 33 366652 3567789999888788877776677787755 478899998876
No 329
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=77.00 E-value=52 Score=29.07 Aligned_cols=109 Identities=15% Similarity=0.210 Sum_probs=64.3
Q ss_pred hHHHHhcCCCEEEE-ccCC-cccccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhhhcceEEEEeecCCC---CCCcc
Q 025927 131 VPDFIKAGADIVSV-HCEQ-SSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGF---GGQSF 205 (246)
Q Consensus 131 i~~~~~agad~It~-H~E~-~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~~vD~VLvMsV~PGf---gGQ~F 205 (246)
.+.+.++|++++.+ |.|- ....++.+-++...++|+++=+.+ +...+.+.. .... =+++.-||=+ +|..=
T Consensus 74 ~~mLkd~G~~~viiGHSERRf~Etdi~~Kv~~a~~~gl~~IvCi--~~v~~q~~~--~~~~-~~vIAYEPvWAIGtG~~a 148 (205)
T TIGR00419 74 AEMLKDIGAKGTLINHSERRMKLADIEKKIARLKELGLTSVVCT--NNVLTTAAA--AALE-PDVVAVEPPELIGTGIPV 148 (205)
T ss_pred HHHHHHcCCCEEEECcccCCCCccHHHHHHHHHHHCCCEEEEEE--HHHHHHHHh--hhhc-CeEEEECCHHHhCCCCCC
Confidence 45677788876554 5552 112236677778889999988888 222222211 1111 2578889932 46654
Q ss_pred cHHHHHHHHHHHHHHHhcCCCCeEEEeCCCChhhhhhcc
Q 025927 206 IESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVP 244 (246)
Q Consensus 206 ~~~~l~KI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~l~ 244 (246)
-++-.+.+...-++..+..-+..|.-=|||+.+|+.++.
T Consensus 149 s~~~~~~v~~~ir~~~~~~~~~~IlYGGSV~~~N~~~l~ 187 (205)
T TIGR00419 149 SPAQPEVVHGSVRAVKEVNESVRVLCGAGISTGEDAELA 187 (205)
T ss_pred CHHHHHHHHHHHHhhhhhcCCceEEEeCCCCHHHHHHHh
Confidence 554444443332232232335679999999999998864
No 330
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=76.96 E-value=11 Score=34.91 Aligned_cols=79 Identities=25% Similarity=0.312 Sum_probs=69.8
Q ss_pred hhhHHHHHHHHHHcCCCEEEeee--ccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEEEcc
Q 025927 69 FAKLGEQVKAVELAGCDWIHVDV--MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHC 146 (246)
Q Consensus 69 ~~~l~~~i~~l~~~g~d~lHiDI--MDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It~H~ 146 (246)
+.+.++-.+.+++.|+|+|=+=| .=|.|...=-+..+.++.|++.+++|+-.|==.--|+..+.+.++.|..-|-+.-
T Consensus 152 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~~~~~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T 231 (282)
T TIGR01858 152 YTDPQEAKEFVEATGVDSLAVAIGTAHGLYKKTPKLDFDRLAEIREVVDVPLVLHGASDVPDEDVRRTIELGICKVNVAT 231 (282)
T ss_pred cCCHHHHHHHHHHHCcCEEecccCccccCcCCCCccCHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcCCeEEEeCc
Confidence 66777888888899999999888 6788876556777899999998999999999999999999999999999999887
Q ss_pred C
Q 025927 147 E 147 (246)
Q Consensus 147 E 147 (246)
|
T Consensus 232 ~ 232 (282)
T TIGR01858 232 E 232 (282)
T ss_pred H
Confidence 6
No 331
>PF01717 Meth_synt_2: Cobalamin-independent synthase, Catalytic domain; InterPro: IPR002629 This is a domain of vitamin-B12 independent methionine synthases or 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferases, 2.1.1.14 from EC from bacteria and plants. Plants are the only higher eukaryotes that have the required enzymes for methionine synthesis []. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to homocysteine []. The aligned region makes up the carboxy region of the approximately 750 amino acid protein except in some hypothetical archaeal proteins present in the family, where this region corresponds to the entire length.; GO: 0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, 0009086 methionine biosynthetic process; PDB: 1U22_A 1U1H_A 1U1U_A 1U1J_A 3BQ5_A 3BQ6_A 1XDJ_B 1XR2_B 1T7L_B 1XPG_B ....
Probab=76.93 E-value=45 Score=30.68 Aligned_cols=145 Identities=19% Similarity=0.255 Sum_probs=81.4
Q ss_pred hHHHHHHHHHHcCCCEEEeeecc-CcccCCCCC----------CHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCC
Q 025927 71 KLGEQVKAVELAGCDWIHVDVMD-GRFVPNITI----------GPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGA 139 (246)
Q Consensus 71 ~l~~~i~~l~~~g~d~lHiDIMD-G~FVpN~tf----------gp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~aga 139 (246)
.+.++++.|.++|+..|.+|==- ..+.+...+ --..++..-+-.+.++-+|+--.|....++.+.+.++
T Consensus 155 a~~~ei~~l~~~G~~~iQiDeP~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~H~C~~~~~~~~~~l~~~~v 234 (324)
T PF01717_consen 155 AYREEIRALYDAGCRYIQIDEPALSEGPPDASFDRDEYLDEAVAAEALNRAVKGEDATVGVHVCRGNYPSILPLLADLNV 234 (324)
T ss_dssp HHHHHHHHHHHTT-SEEEEEETCHHCTSCSSHHHHHHHHHHHHHHHHHHHTTSTTTSEEEEEESSSCHCTTHHHHHCSS-
T ss_pred HHHHHHHHHHHCCCCEEEecchHhhcchhhhcccHHHHHHHHHHHHHHHhccCCCCCEEEEEecCccchhhHHHHhhccc
Confidence 35688999999999999999331 012222221 1122332222246677888877765555578899999
Q ss_pred CEEEEccCCcccccHHHHHHHHHH--cCCcEEEEEcCCCC--hHHHHHhhh----hcceE----EEEeecCCCCCCcccH
Q 025927 140 DIVSVHCEQSSTIHLHRTLNQIKD--LGAKAGVVLNPATS--LSAIECVLD----VVDLV----LIMSVNPGFGGQSFIE 207 (246)
Q Consensus 140 d~It~H~E~~~~~~~~~~i~~Ik~--~G~k~GlAlnP~Tp--ve~l~~~l~----~vD~V----LvMsV~PGfgGQ~F~~ 207 (246)
|.+.+.+-.. . ...+..+++ .|.++|+-+=+.+. +|..+.+.+ ..+++ ++.|=+=||++.. ..
T Consensus 235 d~~~lE~~~~--~--~~~l~~l~~~~~~k~v~lGvv~~~~~~vE~~e~v~~ri~~a~~~~~~~~l~~sPdCGfa~~~-~~ 309 (324)
T PF01717_consen 235 DAFFLEFADR--R--AGDLEPLRELPSGKKVVLGVVDTKSPEVESPEEVADRIEEALEYVPLEQLWLSPDCGFASLT-RE 309 (324)
T ss_dssp SEEEEEETSS--T--TGGGHHCHCTTTTSEEEEEES-TTSSS--THHHHHHHHHHHHTTS-GGGEEEEESSTSTTS--HH
T ss_pred ceEEeecccC--C--cccHHHHHhCcCCceEEEEEEcCCCCCcCCHHHHHHHHHHHHhcCccccEEEcCCCCCCCCC-HH
Confidence 9988766531 1 123344454 78888887766533 233333322 23333 3444444898764 56
Q ss_pred HHHHHHHHHHHHH
Q 025927 208 SQVKKISDLRRMC 220 (246)
Q Consensus 208 ~~l~KI~~lr~l~ 220 (246)
.+.+|++.+++..
T Consensus 310 ~a~~kL~~~v~aa 322 (324)
T PF01717_consen 310 EARAKLRNMVEAA 322 (324)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777766543
No 332
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=76.82 E-value=45 Score=29.02 Aligned_cols=70 Identities=16% Similarity=0.064 Sum_probs=39.8
Q ss_pred CcccchHHHHhcCCCEEEEccCC---cccccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhh--hcceEEEEe
Q 025927 126 EPEQRVPDFIKAGADIVSVHCEQ---SSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD--VVDLVLIMS 195 (246)
Q Consensus 126 ~P~~~i~~~~~agad~It~H~E~---~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~--~vD~VLvMs 195 (246)
+|..+++.+.++|++.+++|-=. .....-.++++.+++.--.+=++..--.+.+.++..+. .+|.|.+.+
T Consensus 154 ~~~~~~~~~~~~G~d~i~i~~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~l~~~gadgV~vg~ 228 (232)
T TIGR03572 154 DPVEWAREAEQLGAGEILLNSIDRDGTMKGYDLELIKTVSDAVSIPVIALGGAGSLDDLVEVALEAGASAVAAAS 228 (232)
T ss_pred CHHHHHHHHHHcCCCEEEEeCCCccCCcCCCCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHHcCCCEEEEeh
Confidence 35677788889999999999621 00111235566666542122233333356677777333 377777754
No 333
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]
Probab=76.70 E-value=36 Score=33.48 Aligned_cols=135 Identities=18% Similarity=0.200 Sum_probs=88.3
Q ss_pred hhhHHHHHHHHHHcC-CCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEEEccC
Q 025927 69 FAKLGEQVKAVELAG-CDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCE 147 (246)
Q Consensus 69 ~~~l~~~i~~l~~~g-~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It~H~E 147 (246)
+-++++-.+++...+ .+|+|+=-.=|+|+-.... .+.|-+.-=-++.+|+-..||+--.+.+.+-. +|
T Consensus 93 ~p~le~~~~r~~~~~~d~~~rL~~tsG~~~~lt~~----~~~i~~~gvdev~~SVhtT~p~lR~klm~n~~-------A~ 161 (414)
T COG1625 93 YPDLEPRGRRARLYYKDDDIRLSFTSGSGFTLTNR----AERIIDAGVDEVYFSVHTTNPELRAKLMKNPN-------AE 161 (414)
T ss_pred CcchhhhhhHHHhhcCCccceeeeeeccceeccch----HHHHHHcCCCeeEEEEeeCCHHHHHHHhcCCc-------HH
Confidence 346777888888888 8889999888888765433 33343332237889999999998787775422 12
Q ss_pred CcccccHHHHHHHHHHc--CCcEEEEEcCCCC-hHHHHHhhhh-----cceEEEEeecC-C------CCCCcccHHHHHH
Q 025927 148 QSSTIHLHRTLNQIKDL--GAKAGVVLNPATS-LSAIECVLDV-----VDLVLIMSVNP-G------FGGQSFIESQVKK 212 (246)
Q Consensus 148 ~~~~~~~~~~i~~Ik~~--G~k~GlAlnP~Tp-ve~l~~~l~~-----vD~VLvMsV~P-G------fgGQ~F~~~~l~K 212 (246)
.+...|.+.-++ -+.|-+++.|+-. .+.|.+-+.+ ...+.+|.|+| | ++.+.--|+.++.
T Consensus 162 -----~~le~L~~f~~~~~~v~a~iVl~PGvNdge~L~kT~~dL~~~g~~~~~~~~~~pvGlt~~n~~~i~~~t~~~l~~ 236 (414)
T COG1625 162 -----QLLELLRRFAERCIEVHAQIVLCPGVNDGEELEKTLEDLEEWGAHEVILMRVVPVGLTRYNRPGIRPPTPHELEE 236 (414)
T ss_pred -----HHHHHHHHHHHhhhheeeEEEEcCCcCcHHHHHHHHHHHHHhCcCceeEEEeecceeeecCCCCCCCCCHHHHHH
Confidence 233445555555 4678999999987 6776665543 56678886666 4 1344445556655
Q ss_pred HHHHHHH
Q 025927 213 ISDLRRM 219 (246)
Q Consensus 213 I~~lr~l 219 (246)
++.+.+-
T Consensus 237 ~k~i~re 243 (414)
T COG1625 237 FKEIVRE 243 (414)
T ss_pred HHHHHHH
Confidence 5555333
No 334
>PRK07360 FO synthase subunit 2; Reviewed
Probab=76.65 E-value=12 Score=35.49 Aligned_cols=113 Identities=13% Similarity=0.164 Sum_probs=70.7
Q ss_pred cChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCC-C--CHHHHhhcccCCCCCeeEEEec------------cCcccch
Q 025927 67 ANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNIT-I--GPLVVDALRPVTDLPLDVHLMI------------VEPEQRV 131 (246)
Q Consensus 67 aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~t-f--gp~~I~~ir~~t~~plDvHLMV------------~~P~~~i 131 (246)
.+...+.+.++.+.+.|+..+|+= -|. -|+.. + =.++++.||+... .+.+|.+. ......+
T Consensus 91 ls~eeI~~~a~~a~~~G~~~i~l~--~G~-~p~~~~~e~~~~~i~~ik~~~~-~i~i~a~s~~ei~~~~~~~G~~~~e~l 166 (371)
T PRK07360 91 LTIAEILEKAAEAVKRGATEVCIQ--GGL-HPAADSLEFYLEILEAIKEEFP-DIHLHAFSPMEVYFAAREDGLSYEEVL 166 (371)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEc--cCC-CCCCCcHHHHHHHHHHHHHhCC-CcceeeCCHHHHHHHHhhcCCCHHHHH
Confidence 567788889999999999998875 664 35443 1 1355666665321 13444321 1224568
Q ss_pred HHHHhcCCCEEE--------------EccCCcccccHHHHHHHHHHcCCc--EEEEEcCCCChHHHHH
Q 025927 132 PDFIKAGADIVS--------------VHCEQSSTIHLHRTLNQIKDLGAK--AGVVLNPATSLSAIEC 183 (246)
Q Consensus 132 ~~~~~agad~It--------------~H~E~~~~~~~~~~i~~Ik~~G~k--~GlAlnP~Tpve~l~~ 183 (246)
+.|.+||++.+. +|.+-.+.....++++..+++|++ +|+.+..+-..+....
T Consensus 167 ~~LkeAGld~~~~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~~Gl~~~sg~i~G~gEt~edrv~ 234 (371)
T PRK07360 167 KALKDAGLDSMPGTAAEILVDEVRRIICPEKIKTAEWIEIVKTAHKLGLPTTSTMMYGHVETPEHRID 234 (371)
T ss_pred HHHHHcCCCcCCCcchhhccHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCceeeEEeeCCCCHHHHHH
Confidence 899999999883 122211223566888999999986 4777766655554444
No 335
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=76.54 E-value=52 Score=29.43 Aligned_cols=40 Identities=20% Similarity=0.076 Sum_probs=27.7
Q ss_pred ccChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHh
Q 025927 66 SANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVD 108 (246)
Q Consensus 66 ~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~ 108 (246)
..|+..+.+.++.+.+.|++.+=+= |+--...++..+.-+
T Consensus 14 ~iD~~~~~~~i~~l~~~Gv~gi~~~---GstGE~~~ls~~Er~ 53 (281)
T cd00408 14 EVDLDALRRLVEFLIEAGVDGLVVL---GTTGEAPTLTDEERK 53 (281)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEC---CCCcccccCCHHHHH
Confidence 5799999999999999999876432 333333555554333
No 336
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=76.54 E-value=7.2 Score=36.44 Aligned_cols=77 Identities=14% Similarity=0.222 Sum_probs=51.4
Q ss_pred cHHHHHHHHHHcCC-cEEEEEcCCCChHHHHHhhhh-cceEEEEeecCCCCCCcccHHHHHHHHHHHHHHHhcCCCCeEE
Q 025927 153 HLHRTLNQIKDLGA-KAGVVLNPATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIE 230 (246)
Q Consensus 153 ~~~~~i~~Ik~~G~-k~GlAlnP~Tpve~l~~~l~~-vD~VLvMsV~PGfgGQ~F~~~~l~KI~~lr~l~~~~~~~~~I~ 230 (246)
.+.+.++.+|+..- ..=|.+-.+ +++++++.++. +|.|++= +|.|+.+++.-+ ++++ +..++
T Consensus 182 ~i~~av~~~r~~~~~~~kIeVEv~-tleea~~a~~agaDiImLD---------nmspe~l~~av~---~~~~---~~~le 245 (290)
T PRK06559 182 SVQKAIAQARAYAPFVKMVEVEVE-SLAAAEEAAAAGADIIMLD---------NMSLEQIEQAIT---LIAG---RSRIE 245 (290)
T ss_pred cHHHHHHHHHHhCCCCCeEEEECC-CHHHHHHHHHcCCCEEEEC---------CCCHHHHHHHHH---HhcC---ceEEE
Confidence 46677888886542 122555554 45777777765 9999883 455566655443 3332 46899
Q ss_pred EeCCCChhhhhhccc
Q 025927 231 VDGGVGPKNAYKVPN 245 (246)
Q Consensus 231 VDGGI~~e~i~~l~~ 245 (246)
+=||||.+|++++++
T Consensus 246 aSGGI~~~ni~~yA~ 260 (290)
T PRK06559 246 CSGNIDMTTISRFRG 260 (290)
T ss_pred EECCCCHHHHHHHHh
Confidence 999999999998754
No 337
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=76.33 E-value=65 Score=30.78 Aligned_cols=127 Identities=16% Similarity=0.206 Sum_probs=0.0
Q ss_pred cCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEEEccCCcccccHHHHHHHHHHcCCcEEEEE
Q 025927 93 DGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL 172 (246)
Q Consensus 93 DG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAl 172 (246)
||...|+..|..+...+| ++.+.++|++.|-+=+=+ ..+...+.++.+.+.|.++-+..
T Consensus 14 DG~Q~~~~~~s~e~k~~i--------------------a~~L~~~GV~~IE~G~p~-~~~~~~e~i~~i~~~~~~~~i~~ 72 (378)
T PRK11858 14 DGEQTPGVVFTNEEKLAI--------------------ARMLDEIGVDQIEAGFPA-VSEDEKEAIKAIAKLGLNASILA 72 (378)
T ss_pred ccCcCCCCCCCHHHHHHH--------------------HHHHHHhCCCEEEEeCCC-cChHHHHHHHHHHhcCCCeEEEE
Q ss_pred cCCCChHHHHHhhhh-cceEEEEeecCCCCCCcc---------cHHHHHHHHHHHHHHHhcCCCCeEEE-eCC-CChhhh
Q 025927 173 NPATSLSAIECVLDV-VDLVLIMSVNPGFGGQSF---------IESQVKKISDLRRMCLEKGVNPWIEV-DGG-VGPKNA 240 (246)
Q Consensus 173 nP~Tpve~l~~~l~~-vD~VLvMsV~PGfgGQ~F---------~~~~l~KI~~lr~l~~~~~~~~~I~V-DGG-I~~e~i 240 (246)
..-+..+.++..++. +|.|-+. ++-... .++.++++.+.-++..+.|+.+.+.. |++ .+.+-+
T Consensus 73 ~~r~~~~di~~a~~~g~~~i~i~-----~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~~~~~l 147 (378)
T PRK11858 73 LNRAVKSDIDASIDCGVDAVHIF-----IATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDASRTDLDFL 147 (378)
T ss_pred EcccCHHHHHHHHhCCcCEEEEE-----EcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCCHHHH
Q ss_pred hhccc
Q 025927 241 YKVPN 245 (246)
Q Consensus 241 ~~l~~ 245 (246)
.++++
T Consensus 148 ~~~~~ 152 (378)
T PRK11858 148 IEFAK 152 (378)
T ss_pred HHHHH
No 338
>COG0685 MetF 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=76.19 E-value=65 Score=29.78 Aligned_cols=131 Identities=18% Similarity=0.113 Sum_probs=89.6
Q ss_pred CcEEeeeecccChh----hHHHHHHHHH-HcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCC-eeEEEeccCcc--
Q 025927 57 DIIVSPSILSANFA----KLGEQVKAVE-LAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLP-LDVHLMIVEPE-- 128 (246)
Q Consensus 57 ~~~IsPSIl~aD~~----~l~~~i~~l~-~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~p-lDvHLMV~~P~-- 128 (246)
+..+|.=+..-.-. ++.+.++++. ..+-...=+++-||.= ..-...+..+..+.+.+..+ .-.||-..+=.
T Consensus 14 ~~~~s~E~~Ppk~~~~~~~l~~~~~~~~~~~~p~~~svt~~d~~~-~~~~~t~~~~~~~~~~~~~~~~i~Hltc~d~n~~ 92 (291)
T COG0685 14 KIEVSFELFPPKTDEGEENLEKLLERLAILLGPGFDSVTIPDGSR-GTPRRTSVAAAALLKRTGGIEPIPHLTCRDRNRI 92 (291)
T ss_pred CceEEEEEeCCCcchhhcCHHHHHHHHHhhhCCceEEEEecCCCC-CCCcccHHHHHHHHHhcCCCccceeecccCCCHH
Confidence 44455555544445 7888888887 5566678888899873 23355667888888877565 88999877532
Q ss_pred ---cchHHHHhcCCCEEEE---------ccCCcccccHHHHHHHHHHcC---CcEEEEEcCCCC------hHHHHHhhhh
Q 025927 129 ---QRVPDFIKAGADIVSV---------HCEQSSTIHLHRTLNQIKDLG---AKAGVVLNPATS------LSAIECVLDV 187 (246)
Q Consensus 129 ---~~i~~~~~agad~It~---------H~E~~~~~~~~~~i~~Ik~~G---~k~GlAlnP~Tp------ve~l~~~l~~ 187 (246)
..++.+.+.|...|-. +++.. ..+..++++.||+.. ..+|+|++|+-. .+++..+-.+
T Consensus 93 ~i~~~l~~~~~~Gi~~ilaLrGDpp~g~~~~~~-~~~s~dLv~lik~~~~~~f~i~~A~~Pe~h~~s~~~~~d~~~lkrK 171 (291)
T COG0685 93 EIISILKGAAALGIRNILALRGDPPAGDKPGGK-DLYSVDLVELIKKMRGGIFDIGVAAYPEGHPESKDVKEDIKRLKRK 171 (291)
T ss_pred HHHHHHHHHHHhCCceEEEecCCCCCCCCCCcc-ccCHHHHHHHHHHhcCCeEEEEEEeCCCCCccchhhHHHHHHHHHH
Confidence 3566677778765532 22210 235678899999665 899999999988 5567777667
Q ss_pred cc
Q 025927 188 VD 189 (246)
Q Consensus 188 vD 189 (246)
+|
T Consensus 172 v~ 173 (291)
T COG0685 172 VD 173 (291)
T ss_pred Hh
Confidence 76
No 339
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=76.14 E-value=7.1 Score=38.73 Aligned_cols=104 Identities=18% Similarity=0.219 Sum_probs=65.7
Q ss_pred ChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHH--HhcCCCEEEEc
Q 025927 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDF--IKAGADIVSVH 145 (246)
Q Consensus 68 D~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~--~~agad~It~H 145 (246)
++..+.+.+++++++|+|.|-+==|=|...|.-. .+.+++||+..++|+++|.=-..=......+ +++|||+|-.=
T Consensus 151 t~e~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v--~~Lv~~lk~~~~vpI~~H~Hnt~GlA~AN~laAieaGad~vD~s 228 (467)
T PRK14041 151 TLEYYLEFARELVDMGVDSICIKDMAGLLTPKRA--YELVKALKKKFGVPVEVHSHCTTGLASLAYLAAVEAGADMFDTA 228 (467)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCccCCcCHHHH--HHHHHHHHHhcCCceEEEecCCCCcHHHHHHHHHHhCCCEEEee
Confidence 4566777788888888888877666666666432 2466777776678888887544333222222 57899987654
Q ss_pred cCCc----ccccHHHHHHHHHHcCCcEEEEEc
Q 025927 146 CEQS----STIHLHRTLNQIKDLGAKAGVVLN 173 (246)
Q Consensus 146 ~E~~----~~~~~~~~i~~Ik~~G~k~GlAln 173 (246)
+-.. +....+.++..++..|...|+=+.
T Consensus 229 v~~~g~gagN~atE~lv~~L~~~g~~tgiDl~ 260 (467)
T PRK14041 229 ISPFSMGTSQPPFESMYYAFRENGKETDFDRK 260 (467)
T ss_pred ccccCCCCCChhHHHHHHHHHhcCCCCCcCHH
Confidence 4322 223456677777777776665444
No 340
>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.
Probab=76.10 E-value=3 Score=40.50 Aligned_cols=117 Identities=18% Similarity=0.184 Sum_probs=79.1
Q ss_pred cceeccccCCCCCCceeccccceeeeeeccccccCCCCCcEEeeeecccChhhHHHHHHHHHHcCCCEEEeeeccCcccC
Q 025927 19 GFMLQKTNLNQPSSLSFTRRRIQTIVKASARVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVP 98 (246)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IsPSIl~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVp 98 (246)
++.-.+-.+..++-.. -+.|++.+..|-.|..+-...+..-+|-|- ++...+.+..+.+.+.|++.+.+|++
T Consensus 155 D~IKDDE~l~~q~~~p-~~eRv~a~~~a~~~a~~eTG~~~~ya~NiT-~~~~em~~ra~~~~~~G~~~~mv~~~------ 226 (391)
T cd08209 155 DLIKDDEILFDNPLAP-ALERIRACRPVLQEVYEQTGRRTLYAVNLT-GPVFTLKEKARRLVEAGANALLFNVF------ 226 (391)
T ss_pred CcccccccCCCCCCCC-HHHHHHHHHHHHHHHHHhhCCcceEEEEcC-CCHHHHHHHHHHHHHhCCCEEEEecc------
Confidence 5565666665544333 344566666665555544443455566655 78899999999999999999999874
Q ss_pred CCCCCHHHHhhccc--CCCCCeeEE-----EeccCccc-------chHHHHhcCCCEEEEc
Q 025927 99 NITIGPLVVDALRP--VTDLPLDVH-----LMIVEPEQ-------RVPDFIKAGADIVSVH 145 (246)
Q Consensus 99 N~tfgp~~I~~ir~--~t~~plDvH-----LMV~~P~~-------~i~~~~~agad~It~H 145 (246)
+.|...++.|++ ..++|+..| -|+.+|.. |-+.+.-+|+|.+.|+
T Consensus 227 --~~G~~~l~~l~~~~~~~lpIhaHra~~ga~~~~~~~Gis~~~~l~kl~RLaGaD~~~~~ 285 (391)
T cd08209 227 --AYGLDVLEALASDPEINVPIFAHPAFAGALYGSPDYGIAASVLLGTLMRLAGADAVLFP 285 (391)
T ss_pred --ccchHHHHHHHhcCcCCcEEEecCCcccccccCCCCCCcHHHHHHHHHHHcCCCccccC
Confidence 456667888887 456788887 35556652 2233455899999887
No 341
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=76.08 E-value=8.2 Score=35.66 Aligned_cols=61 Identities=23% Similarity=0.301 Sum_probs=41.2
Q ss_pred HHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCe--eEEEeccCcccchHHHHhcCCCEEEEcc
Q 025927 74 EQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL--DVHLMIVEPEQRVPDFIKAGADIVSVHC 146 (246)
Q Consensus 74 ~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~pl--DvHLMV~~P~~~i~~~~~agad~It~H~ 146 (246)
+|+++..+.|+|++=+| .+|++.++++++....|+ .+ .==-++++ ++.+++.|+|.|.+=.
T Consensus 199 eea~~A~~~gaDyI~lD----------~~~~e~l~~~~~~~~~~i~i~A-iGGIt~~n-i~~~a~~Gvd~IAvg~ 261 (277)
T PRK08072 199 EQVREAVAAGADIIMFD----------NRTPDEIREFVKLVPSAIVTEA-SGGITLEN-LPAYGGTGVDYISLGF 261 (277)
T ss_pred HHHHHHHHcCCCEEEEC----------CCCHHHHHHHHHhcCCCceEEE-ECCCCHHH-HHHHHHcCCCEEEECh
Confidence 55666677999999886 288999999877544222 12 10114443 7788999999998743
No 342
>PRK04208 rbcL ribulose bisophosphate carboxylase; Reviewed
Probab=76.04 E-value=4.2 Score=40.41 Aligned_cols=118 Identities=16% Similarity=0.192 Sum_probs=81.1
Q ss_pred cceeccccCCCCCCceeccccceeeeeeccccccCCCCCcEEeeeecccChhhHHHHHHHHHHcCCCEEEeeeccCcccC
Q 025927 19 GFMLQKTNLNQPSSLSFTRRRIQTIVKASARVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVP 98 (246)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IsPSIl~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVp 98 (246)
++...+-++..++ +..-+.|++.+..|-.|..+-.......++-|-..|...+.+..+.+.+.|++.+.+|++=
T Consensus 191 D~IKDDE~l~~q~-f~p~~~Rv~~~~~a~~~a~~eTG~~k~y~~NiT~~~~~em~~ra~~~~e~G~~~~mv~~~~----- 264 (468)
T PRK04208 191 DFTKDDENLNSQP-FNRWRDRFLFVMEAIDKAEAETGERKGHYLNVTAPTMEEMYKRAEFAKELGSPIVMIDVVT----- 264 (468)
T ss_pred ceeeCCCCCCCCC-CccHHHHHHHHHHHHHHHHHhhCCcceEEEecCCCCHHHHHHHHHHHHHhCCCEEEEeccc-----
Confidence 5555555554443 3334556666666666665555545677888876559999999999999999999998753
Q ss_pred CCCCCHHHHhhccc---CCCCCeeEEE-----eccCcc------cchHHHHhcCCCEEEEc
Q 025927 99 NITIGPLVVDALRP---VTDLPLDVHL-----MIVEPE------QRVPDFIKAGADIVSVH 145 (246)
Q Consensus 99 N~tfgp~~I~~ir~---~t~~plDvHL-----MV~~P~------~~i~~~~~agad~It~H 145 (246)
.|...+..|++ ..++|+..|= |+.+|. -+-+.+.-+|+|.+.+.
T Consensus 265 ---~G~~~l~~l~~~~~~~~l~IhaHrA~~ga~~r~~~~Gis~~vl~Kl~RLaGaD~ih~~ 322 (468)
T PRK04208 265 ---AGWTALQSLREWCRDNGLALHAHRAMHAAFTRNPNHGISFRVLAKLLRLIGVDHLHTG 322 (468)
T ss_pred ---cccHHHHHHHHhhhcCCcEEEecCCcccccccCcCCCCCHHHHHHHHHHcCCCccccC
Confidence 45556777775 5688999884 444554 23334455899998886
No 343
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=75.94 E-value=18 Score=32.34 Aligned_cols=95 Identities=20% Similarity=0.157 Sum_probs=65.6
Q ss_pred hhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEE----Ec
Q 025927 70 AKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVS----VH 145 (246)
Q Consensus 70 ~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It----~H 145 (246)
.++.+.++++++.|++.+.+--.|..=. .-++..+.++++++.+++|+-+.==+.+|+...+.+..-|++.+. +|
T Consensus 155 ~~~~~~~~~l~~~G~~~iivt~i~~~g~-~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~ 233 (254)
T TIGR00735 155 LDAVEWAKEVEKLGAGEILLTSMDKDGT-KSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFH 233 (254)
T ss_pred CCHHHHHHHHHHcCCCEEEEeCcCcccC-CCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHh
Confidence 3556778899999999888733332100 123556788999888889988888888888866554443388754 46
Q ss_pred cCCcccccHHHHHHHHHHcCCcE
Q 025927 146 CEQSSTIHLHRTLNQIKDLGAKA 168 (246)
Q Consensus 146 ~E~~~~~~~~~~i~~Ik~~G~k~ 168 (246)
.. ...+..+++..++.|+.+
T Consensus 234 ~~---~~~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 234 YR---EITIGEVKEYLAERGIPV 253 (254)
T ss_pred CC---CCCHHHHHHHHHHCCCcc
Confidence 54 245778888888888764
No 344
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=75.88 E-value=5.2 Score=37.02 Aligned_cols=62 Identities=15% Similarity=0.190 Sum_probs=42.0
Q ss_pred HHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCC--CCCeeEEEeccCcccchHHHHhcCCCEEEEcc
Q 025927 73 GEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVT--DLPLDVHLMIVEPEQRVPDFIKAGADIVSVHC 146 (246)
Q Consensus 73 ~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t--~~plDvHLMV~~P~~~i~~~~~agad~It~H~ 146 (246)
.+|+++..++|+|++-+| .|+|+.++++.+.. +.|+.+= ==-++++ ++.|++.|+|.|++=.
T Consensus 199 leea~eA~~~gaD~I~LD----------~~~~e~l~~~v~~~~~~i~leAs-GGIt~~n-i~~~a~tGvD~Isvg~ 262 (277)
T PRK05742 199 LDELRQALAAGADIVMLD----------ELSLDDMREAVRLTAGRAKLEAS-GGINEST-LRVIAETGVDYISIGA 262 (277)
T ss_pred HHHHHHHHHcCCCEEEEC----------CCCHHHHHHHHHHhCCCCcEEEE-CCCCHHH-HHHHHHcCCCEEEECh
Confidence 356666668899999887 45888998876643 4454441 0014333 7789999999998743
No 345
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=75.71 E-value=9.2 Score=35.06 Aligned_cols=92 Identities=22% Similarity=0.216 Sum_probs=74.7
Q ss_pred HHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCC----EEEEccCCc
Q 025927 74 EQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGAD----IVSVHCEQS 149 (246)
Q Consensus 74 ~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad----~It~H~E~~ 149 (246)
+..+++++.|+--|=+--||.-= -+-+|..+.++.+++..++|+-+-==.-+|+.+++.|.+..|| --.||+-.
T Consensus 159 ~Wa~~~e~~GAGEIlLtsmD~DG-tk~GyDl~l~~~v~~~v~iPvIASGGaG~~ehf~eaf~~~~adAaLAAsiFH~~~- 236 (256)
T COG0107 159 EWAKEVEELGAGEILLTSMDRDG-TKAGYDLELTRAVREAVNIPVIASGGAGKPEHFVEAFTEGKADAALAASIFHFGE- 236 (256)
T ss_pred HHHHHHHHcCCceEEEeeecccc-cccCcCHHHHHHHHHhCCCCEEecCCCCcHHHHHHHHHhcCccHHHhhhhhhcCc-
Confidence 66778888999999999999654 3579999999999999999998888888999999999887666 34578763
Q ss_pred ccccHHHHHHHHHHcCCcEE
Q 025927 150 STIHLHRTLNQIKDLGAKAG 169 (246)
Q Consensus 150 ~~~~~~~~i~~Ik~~G~k~G 169 (246)
..+..+-++++++|+.+.
T Consensus 237 --~~i~evK~yL~~~gi~VR 254 (256)
T COG0107 237 --ITIGEVKEYLAEQGIEVR 254 (256)
T ss_pred --ccHHHHHHHHHHcCCCcc
Confidence 356677788888887764
No 346
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=75.68 E-value=24 Score=32.83 Aligned_cols=121 Identities=25% Similarity=0.323 Sum_probs=69.0
Q ss_pred HHHHHHHHHHcCCCEEEeeeccCc----cc-C--C-------------CCCCHHHHhhcccCC--CCCeeEEEecc----
Q 025927 72 LGEQVKAVELAGCDWIHVDVMDGR----FV-P--N-------------ITIGPLVVDALRPVT--DLPLDVHLMIV---- 125 (246)
Q Consensus 72 l~~~i~~l~~~g~d~lHiDIMDG~----FV-p--N-------------~tfgp~~I~~ir~~t--~~plDvHLMV~---- 125 (246)
+.+..+++.++|.|.+-+-.--|. |. | | .-|--++++++|+.. ++++-+-+=..
T Consensus 156 ~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~ 235 (336)
T cd02932 156 FVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWVE 235 (336)
T ss_pred HHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccCC
Confidence 335556777889999887765543 11 1 2 123368999999876 44444332211
Q ss_pred ---Ccc---cchHHHHhcCCCEEEEccC--------CcccccHHHHHHHHHHc-CCcEEEEEcCCCChHHHHHhhhh--c
Q 025927 126 ---EPE---QRVPDFIKAGADIVSVHCE--------QSSTIHLHRTLNQIKDL-GAKAGVVLNPATSLSAIECVLDV--V 188 (246)
Q Consensus 126 ---~P~---~~i~~~~~agad~It~H~E--------~~~~~~~~~~i~~Ik~~-G~k~GlAlnP~Tpve~l~~~l~~--v 188 (246)
+++ .+++.+.+.|+|+|.+|.= ..........++.+|+. ++.+ ++-.--+..+..+.+|.. +
T Consensus 236 ~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPV-i~~G~i~t~~~a~~~l~~g~a 314 (336)
T cd02932 236 GGWDLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQEAGIPV-IAVGLITDPEQAEAILESGRA 314 (336)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhhCCCCE-EEeCCCCCHHHHHHHHHcCCC
Confidence 132 4555667789999998721 10011123556667764 3332 233333577888888864 7
Q ss_pred ceEEE
Q 025927 189 DLVLI 193 (246)
Q Consensus 189 D~VLv 193 (246)
|+|.+
T Consensus 315 D~V~~ 319 (336)
T cd02932 315 DLVAL 319 (336)
T ss_pred Ceehh
Confidence 88654
No 347
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=75.51 E-value=77 Score=31.29 Aligned_cols=143 Identities=15% Similarity=0.194 Sum_probs=79.6
Q ss_pred hhHHHHHHHHHHcCCCEEEeeeccC-------cccCCCCCCHHHHhhcccC-CCCCeeEEEeccCc-------c----cc
Q 025927 70 AKLGEQVKAVELAGCDWIHVDVMDG-------RFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEP-------E----QR 130 (246)
Q Consensus 70 ~~l~~~i~~l~~~g~d~lHiDIMDG-------~FVpN~tfgp~~I~~ir~~-t~~plDvHLMV~~P-------~----~~ 130 (246)
...-+-++.|.++|++++=+ .-| .|+..- ..+.++.+++. .+.++-.++-..|. + .+
T Consensus 26 ~dkl~ia~~Ld~~Gv~~IE~--~ggatf~~~~~f~~e~--p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv~~~ 101 (448)
T PRK12331 26 EEMLPILEKLDNAGYHSLEM--WGGATFDACLRFLNED--PWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVVESF 101 (448)
T ss_pred HHHHHHHHHHHHcCCCEEEe--cCCccchhhhccCCCC--HHHHHHHHHHhCCCCEEEEEeccccccccccCchhhHHHH
Confidence 33445567778889887655 323 333222 24567777664 45555544544333 2 23
Q ss_pred hHHHHhcCCCEEEEccCCcccccHHHHHHHHHHcCCcEEEEEc----CCCChHHHHHhhhh-----cceEEEEeecCCCC
Q 025927 131 VPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLN----PATSLSAIECVLDV-----VDLVLIMSVNPGFG 201 (246)
Q Consensus 131 i~~~~~agad~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAln----P~Tpve~l~~~l~~-----vD~VLvMsV~PGfg 201 (246)
++..+++|+|.|.+=.-.....++...++..|+.|..+-+++. |-++++.+..+... +|.|-+- .=.
T Consensus 102 v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~Gad~I~i~----Dt~ 177 (448)
T PRK12331 102 VQKSVENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQEMGADSICIK----DMA 177 (448)
T ss_pred HHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEEc----CCC
Confidence 5566778999766543321234677889999999988654444 44445555554432 4543331 233
Q ss_pred CCcccHHHHHHHHHHHHHH
Q 025927 202 GQSFIESQVKKISDLRRMC 220 (246)
Q Consensus 202 GQ~F~~~~l~KI~~lr~l~ 220 (246)
|-..=..+.+.|+.+|+..
T Consensus 178 G~l~P~~v~~lv~alk~~~ 196 (448)
T PRK12331 178 GILTPYVAYELVKRIKEAV 196 (448)
T ss_pred CCCCHHHHHHHHHHHHHhc
Confidence 4444445666666666543
No 348
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=75.38 E-value=14 Score=35.87 Aligned_cols=62 Identities=19% Similarity=0.234 Sum_probs=43.9
Q ss_pred CcEEeeeecc-cChhhHHHHHHHHHHcCCCEEEeeeccCcccCCC----------CCCHHHH----hhcccCCCCCeeEE
Q 025927 57 DIIVSPSILS-ANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNI----------TIGPLVV----DALRPVTDLPLDVH 121 (246)
Q Consensus 57 ~~~IsPSIl~-aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~----------tfgp~~I----~~ir~~t~~plDvH 121 (246)
++.+-.||+. .+.....+-+++++++|+|.+=+.+- +||. .-.|+.+ +++|+.+++|+-|=
T Consensus 113 ~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiS----CPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~~~iPv~vK 188 (385)
T PLN02495 113 DRILIASIMEEYNKDAWEEIIERVEETGVDALEINFS----CPHGMPERKMGAAVGQDCDLLEEVCGWINAKATVPVWAK 188 (385)
T ss_pred CCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECC----CCCCCCcCccchhhccCHHHHHHHHHHHHHhhcCceEEE
Confidence 4577889977 68888888899999999999999873 3443 2345666 44466666665555
Q ss_pred E
Q 025927 122 L 122 (246)
Q Consensus 122 L 122 (246)
|
T Consensus 189 L 189 (385)
T PLN02495 189 M 189 (385)
T ss_pred e
Confidence 4
No 349
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=75.33 E-value=24 Score=33.97 Aligned_cols=126 Identities=23% Similarity=0.337 Sum_probs=84.9
Q ss_pred ccccceeeeeeccccccCCCCCcEEeeeecccChhhHH---HHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhccc
Q 025927 36 TRRRIQTIVKASARVDKFSKSDIIVSPSILSANFAKLG---EQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRP 112 (246)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~IsPSIl~aD~~~l~---~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~ 112 (246)
+||+++.+.=..-.+ -..-.+.-.|+..-|..+.+ +||++|+++|+|.+-+=|-|-.= .+.++.|++
T Consensus 2 ~Rrktr~v~VG~V~v---GgdaPI~VQSMTnT~T~Dv~aTv~QI~~L~~aG~dIVRvtv~~~e~-------A~A~~~Ik~ 71 (361)
T COG0821 2 PRRKTRQVKVGNVPV---GGDAPIVVQSMTNTDTADVEATVAQIKALERAGCDIVRVTVPDMEA-------AEALKEIKQ 71 (361)
T ss_pred CcccceeEEECCEee---cCCCceEEEeccCCCcccHHHHHHHHHHHHHcCCCEEEEecCCHHH-------HHHHHHHHH
Confidence 466666654332111 11123445566665555554 88999999999999987655322 345677777
Q ss_pred CCCCCe--eEEEeccCcccchHHHHhcCCCEEEEccCCccc-ccHHHHHHHHHHcCCcEEEEEcCC
Q 025927 113 VTDLPL--DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST-IHLHRTLNQIKDLGAKAGVVLNPA 175 (246)
Q Consensus 113 ~t~~pl--DvHLMV~~P~~~i~~~~~agad~It~H~E~~~~-~~~~~~i~~Ik~~G~k~GlAlnP~ 175 (246)
..++|+ |+|.- .++.-...++|++.+-+-+=+... +.+..+++..|+.|+-+=+-+|-+
T Consensus 72 ~~~vPLVaDiHf~----~rla~~~~~~g~~k~RINPGNig~~~~v~~vVe~Ak~~g~piRIGVN~G 133 (361)
T COG0821 72 RLNVPLVADIHFD----YRLALEAAECGVDKVRINPGNIGFKDRVREVVEAAKDKGIPIRIGVNAG 133 (361)
T ss_pred hCCCCEEEEeecc----HHHHHHhhhcCcceEEECCcccCcHHHHHHHHHHHHHcCCCEEEecccC
Confidence 777776 67763 455557788899999998876432 347788999999998887777865
No 350
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=75.09 E-value=2.8 Score=39.53 Aligned_cols=104 Identities=24% Similarity=0.195 Sum_probs=58.3
Q ss_pred cChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCC--CCCeeEEEeccCcccchH--HHHhcCCCEE
Q 025927 67 ANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVT--DLPLDVHLMIVEPEQRVP--DFIKAGADIV 142 (246)
Q Consensus 67 aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t--~~plDvHLMV~~P~~~i~--~~~~agad~I 142 (246)
.+...+.+.+++++++|++.+-+==+=|...|+-. .+.++.+|+.. ++++.+|.=-..=..... ..+++|+++|
T Consensus 141 ~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v--~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aGa~~i 218 (337)
T PRK08195 141 APPEKLAEQAKLMESYGAQCVYVVDSAGALLPEDV--RDRVRALRAALKPDTQVGFHGHNNLGLGVANSLAAVEAGATRI 218 (337)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEeCCCCCCCCHHHH--HHHHHHHHHhcCCCCeEEEEeCCCcchHHHHHHHHHHhCCCEE
Confidence 45667778888888888887654333344444321 12345556544 577777765433332222 2356888855
Q ss_pred EEccC----CcccccHHHHHHHHHHcCCcEEEEE
Q 025927 143 SVHCE----QSSTIHLHRTLNQIKDLGAKAGVVL 172 (246)
Q Consensus 143 t~H~E----~~~~~~~~~~i~~Ik~~G~k~GlAl 172 (246)
--=+- .......+.++..+++.|...|+-+
T Consensus 219 D~Sl~GlG~~aGN~~tE~lv~~L~~~g~~tgidl 252 (337)
T PRK08195 219 DGSLAGLGAGAGNTPLEVLVAVLDRMGWETGVDL 252 (337)
T ss_pred EecChhhcccccCccHHHHHHHHHhcCCCCCcCH
Confidence 43221 1123346667777777777666433
No 351
>cd08212 RuBisCO_large_I Ribulose bisphosphate carboxylase large chain, Form I. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form I is the most abundant class, present in plants, algae, and bacteria, and forms large complexes composed of 8 large and 8 small subunits.
Probab=74.97 E-value=3.2 Score=40.97 Aligned_cols=117 Identities=14% Similarity=0.131 Sum_probs=81.0
Q ss_pred cceeccccCCCCCCceeccccceeeeeeccccccCCCCCcEEeeeecccChhhHHHHHHHHHHcCCCEEEeeeccCcccC
Q 025927 19 GFMLQKTNLNQPSSLSFTRRRIQTIVKASARVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVP 98 (246)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IsPSIl~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVp 98 (246)
++...+-.+..|+-. --+.|++.+..|-.|..+-.......++-|-+.+...+.+..+.+.+.|++.+++|+
T Consensus 176 D~IKDDE~l~~~~~~-p~~~Rv~~~~~a~~~a~~eTG~~~~y~~NiTa~~~~em~~ra~~a~~~G~~~~mv~~------- 247 (450)
T cd08212 176 DFTKDDENINSQPFM-RWRDRFLFVAEAVNKAQAETGEVKGHYLNVTAGTMEEMYKRAEFAKELGSPIIMHDL------- 247 (450)
T ss_pred cccccCccCCCCCCC-CHHHHHHHHHHHHHHHHHhhCCcceeeccccCCCHHHHHHHHHHHHHhCCCeEeeec-------
Confidence 555555565544433 334556666666656555445467788888888899999999999999999999983
Q ss_pred CCCCCHHHHhhccc---CCCCCeeEE-----EeccCccc------chHHHHhcCCCEEEEc
Q 025927 99 NITIGPLVVDALRP---VTDLPLDVH-----LMIVEPEQ------RVPDFIKAGADIVSVH 145 (246)
Q Consensus 99 N~tfgp~~I~~ir~---~t~~plDvH-----LMV~~P~~------~i~~~~~agad~It~H 145 (246)
++ |...+..|++ .+++|+..| -|+.+|.. +-+.+.-+|+|.+.++
T Consensus 248 -~~-G~~~l~~l~~~a~~~~l~IhaHrA~~ga~~r~~~~Gis~~vl~kl~RLaGaD~ih~~ 306 (450)
T cd08212 248 -LT-GFTAIQSLAKWCRDNGMLLHLHRAGHATYDRQKNHGIHFRVLAKWLRLSGVDHIHAG 306 (450)
T ss_pred -cc-ccchHHHHHHHhhhcCceEEeccccceecccCccCCcCHHHHHHHHHHcCCCccccC
Confidence 22 4446777765 578999999 45555552 2233455899998887
No 352
>cd01945 ribokinase_group_B Ribokinase-like subgroup B. Found in bacteria and plants, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time. .
Probab=74.93 E-value=34 Score=29.95 Aligned_cols=109 Identities=21% Similarity=0.259 Sum_probs=62.7
Q ss_pred HHHH-HHHHHHcCCCEEEeeeccCcccCCCCC----CHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEEEcc
Q 025927 72 LGEQ-VKAVELAGCDWIHVDVMDGRFVPNITI----GPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHC 146 (246)
Q Consensus 72 l~~~-i~~l~~~g~d~lHiDIMDG~FVpN~tf----gp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It~H~ 146 (246)
.+++ ++.|++.|++.-|+-..++...+-... |....-... +..-. + .+ ..++...-..++.+.+..
T Consensus 64 ~g~~i~~~l~~~gI~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~---~~~~~--~---~~-~~~~~~~~~~~~~v~i~~ 134 (284)
T cd01945 64 IGRLILAELAAEGVDTSFIVVAPGARSPISSITDITGDRATISIT---AIDTQ--A---AP-DSLPDAILGGADAVLVDG 134 (284)
T ss_pred HHHHHHHHHHHcCCCccceeecCCCCCccEEEEccCCCceEEEec---CCCCC--C---Cc-ccCCHHHhCcCCEEEEcC
Confidence 4444 477889999999998887654322110 111000000 00000 0 11 112222235678888766
Q ss_pred CCcccccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhhhcceEE
Q 025927 147 EQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVL 192 (246)
Q Consensus 147 E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~~vD~VL 192 (246)
.. .+...++++..|+.|.++=+.++|...-+ ++++++.+|++.
T Consensus 135 ~~--~~~~~~~~~~~~~~g~~v~~~~~~~~~~~-~~~~~~~~dil~ 177 (284)
T cd01945 135 RQ--PEAALHLAQEARARGIPIPLDLDGGGLRV-LEELLPLADHAI 177 (284)
T ss_pred CC--HHHHHHHHHHHHHcCCCeeEeccCCcccc-hHHHhccCCEEE
Confidence 52 23456788999999988777788775544 788889999764
No 353
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=74.89 E-value=38 Score=28.48 Aligned_cols=113 Identities=19% Similarity=0.243 Sum_probs=65.3
Q ss_pred HHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEE-EeccCcccchHHHHhcCCCEEEEcc----CCc
Q 025927 75 QVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVH-LMIVEPEQRVPDFIKAGADIVSVHC----EQS 149 (246)
Q Consensus 75 ~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvH-LMV~~P~~~i~~~~~agad~It~H~----E~~ 149 (246)
.++.+.++|+|++.+....+. ..-.++++.+++. ++++-+= +=..+|....+ ....|+|++.+++ ...
T Consensus 69 ~~~~~~~aGad~i~~h~~~~~-----~~~~~~i~~~~~~-g~~~~v~~~~~~t~~e~~~-~~~~~~d~v~~~~~~~~~~~ 141 (202)
T cd04726 69 EAEMAFKAGADIVTVLGAAPL-----STIKKAVKAAKKY-GKEVQVDLIGVEDPEKRAK-LLKLGVDIVILHRGIDAQAA 141 (202)
T ss_pred HHHHHHhcCCCEEEEEeeCCH-----HHHHHHHHHHHHc-CCeEEEEEeCCCCHHHHHH-HHHCCCCEEEEcCccccccc
Confidence 467888999999998765421 1113467777664 4332211 22235555554 6667999998863 110
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhhh-cceEEEEe
Q 025927 150 STIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV-VDLVLIMS 195 (246)
Q Consensus 150 ~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~~-vD~VLvMs 195 (246)
......+.++.+++. ...=+....+-..+.+..++.. +|.+.+=|
T Consensus 142 ~~~~~~~~i~~~~~~-~~~~i~~~GGI~~~~i~~~~~~Gad~vvvGs 187 (202)
T cd04726 142 GGWWPEDDLKKVKKL-LGVKVAVAGGITPDTLPEFKKAGADIVIVGR 187 (202)
T ss_pred CCCCCHHHHHHHHhh-cCCCEEEECCcCHHHHHHHHhcCCCEEEEee
Confidence 012234556666653 1233455555567788888876 88776654
No 354
>PRK08445 hypothetical protein; Provisional
Probab=74.82 E-value=13 Score=35.27 Aligned_cols=114 Identities=11% Similarity=0.107 Sum_probs=70.1
Q ss_pred ccChhhHHHHHHHHHHcCCCEEEeeeccC-cccCCCCCCHHHHhhcccCCCCCeeEEEecc------------CcccchH
Q 025927 66 SANFAKLGEQVKAVELAGCDWIHVDVMDG-RFVPNITIGPLVVDALRPVTDLPLDVHLMIV------------EPEQRVP 132 (246)
Q Consensus 66 ~aD~~~l~~~i~~l~~~g~d~lHiDIMDG-~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~------------~P~~~i~ 132 (246)
..+...+.+.++++.+.|+..+|+ .+| ++.-.+..=.++++.|++... .+.+|-+.. .-+..+.
T Consensus 72 ~l~~eeI~~~~~~a~~~g~~~i~~--~gg~~~~~~~e~~~~l~~~Ik~~~p-~i~~~a~s~~ei~~~a~~~~~~~~e~L~ 148 (348)
T PRK08445 72 ILSFEEIDKKIEELLAIGGTQILF--QGGVHPKLKIEWYENLVSHIAQKYP-TITIHGFSAVEIDYIAKISKISIKEVLE 148 (348)
T ss_pred eCCHHHHHHHHHHHHHcCCCEEEE--ecCCCCCCCHHHHHHHHHHHHHHCC-CcEEEEccHHHHHHHHHHhCCCHHHHHH
Confidence 347788999999999999999987 433 332222222456666766421 134442211 1146678
Q ss_pred HHHhcCCCEEE-EccCCc-------------ccccHHHHHHHHHHcCCcE--EEEEcCCCChHHHH
Q 025927 133 DFIKAGADIVS-VHCEQS-------------STIHLHRTLNQIKDLGAKA--GVVLNPATSLSAIE 182 (246)
Q Consensus 133 ~~~~agad~It-~H~E~~-------------~~~~~~~~i~~Ik~~G~k~--GlAlnP~Tpve~l~ 182 (246)
.|.++|.+.+. .=+|+. ++.+..++++.+|++|++. |+.+...-..+...
T Consensus 149 ~LkeAGl~~~~g~glE~~~d~v~~~~~pk~~t~~~~i~~i~~a~~~Gi~~~sg~i~G~~Et~edr~ 214 (348)
T PRK08445 149 RLQAKGLSSIPGAGAEILSDRVRDIIAPKKLDSDRWLEVHRQAHLIGMKSTATMMFGTVENDEEII 214 (348)
T ss_pred HHHHcCCCCCCCCceeeCCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCeeeeEEEecCCCCHHHHH
Confidence 89999999774 445632 1234568889999999886 55565554443333
No 355
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=74.80 E-value=10 Score=35.47 Aligned_cols=81 Identities=23% Similarity=0.288 Sum_probs=52.3
Q ss_pred CcEEeeeecccChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcc--cchHHH
Q 025927 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPE--QRVPDF 134 (246)
Q Consensus 57 ~~~IsPSIl~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~--~~i~~~ 134 (246)
...+.+++-. + .+..+.++.+.++|++.+++|.-.|+= ..-.+.++++|+.. | ++-+++-+-. .....+
T Consensus 82 ~l~v~~~~~~-~-~~~~~~~~~l~eagv~~I~vd~~~G~~----~~~~~~i~~ik~~~--p-~v~Vi~G~v~t~~~A~~l 152 (325)
T cd00381 82 RLLVGAAVGT-R-EDDKERAEALVEAGVDVIVIDSAHGHS----VYVIEMIKFIKKKY--P-NVDVIAGNVVTAEAARDL 152 (325)
T ss_pred CceEEEecCC-C-hhHHHHHHHHHhcCCCEEEEECCCCCc----HHHHHHHHHHHHHC--C-CceEEECCCCCHHHHHHH
Confidence 4455555433 2 234567888888999999999966532 12245788887743 3 4556643322 446678
Q ss_pred HhcCCCEEEEcc
Q 025927 135 IKAGADIVSVHC 146 (246)
Q Consensus 135 ~~agad~It~H~ 146 (246)
.++|+|.|.+|.
T Consensus 153 ~~aGaD~I~vg~ 164 (325)
T cd00381 153 IDAGADGVKVGI 164 (325)
T ss_pred HhcCCCEEEECC
Confidence 899999999863
No 356
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=74.78 E-value=8 Score=36.41 Aligned_cols=88 Identities=19% Similarity=0.271 Sum_probs=53.7
Q ss_pred CcEEeeeecc---cChhhHHHHHHHHHHcC-CCEEEeeeccCcc---------cCCCCCC----HHHHhhcccCCCCCee
Q 025927 57 DIIVSPSILS---ANFAKLGEQVKAVELAG-CDWIHVDVMDGRF---------VPNITIG----PLVVDALRPVTDLPLD 119 (246)
Q Consensus 57 ~~~IsPSIl~---aD~~~l~~~i~~l~~~g-~d~lHiDIMDG~F---------VpN~tfg----p~~I~~ir~~t~~plD 119 (246)
.++|++.-.- .++....+-++.|+++| +|++|+- -|.+ .|+..++ .+.++.+|+.+++|+-
T Consensus 212 ~iRl~~~~~~~~G~~~~e~~~~~~~l~~~G~vd~i~vs--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~ipvi 289 (343)
T cd04734 212 GIRISGDEDTEGGLSPDEALEIAARLAAEGLIDYVNVS--AGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAVDLPVF 289 (343)
T ss_pred EEEeehhhccCCCCCHHHHHHHHHHHHhcCCCCEEEeC--CCCCCcccccccccCCCCCCcchhHHHHHHHHHHcCCCEE
Confidence 4566654321 12344456678889998 8999973 2322 2222222 3567778887788876
Q ss_pred EEEeccCcccchHHHHhcCCCEEEEcc
Q 025927 120 VHLMIVEPEQRVPDFIKAGADIVSVHC 146 (246)
Q Consensus 120 vHLMV~~P~~~i~~~~~agad~It~H~ 146 (246)
+-=-+.+|+...+.+.+-++|.|.+=-
T Consensus 290 ~~G~i~~~~~~~~~l~~~~~D~V~~gR 316 (343)
T cd04734 290 HAGRIRDPAEAEQALAAGHADMVGMTR 316 (343)
T ss_pred eeCCCCCHHHHHHHHHcCCCCeeeecH
Confidence 665566777755444445689888743
No 357
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=74.69 E-value=69 Score=29.45 Aligned_cols=157 Identities=15% Similarity=0.185 Sum_probs=95.4
Q ss_pred EeeeecccChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCC----CHHHHhhccc---CCCCCeeEEEeccCc--ccc
Q 025927 60 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITI----GPLVVDALRP---VTDLPLDVHLMIVEP--EQR 130 (246)
Q Consensus 60 IsPSIl~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tf----gp~~I~~ir~---~t~~plDvHLMV~~P--~~~ 130 (246)
+-.-+|..|.. ..+......|+|++-+++.=|+|+-+.+| ..+.++.-+. ...+..|||-=-..| .+-
T Consensus 82 ~GvnvL~nd~~---aal~iA~a~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~r~~l~~~v~i~adV~~kh~~~l~~~~ 158 (257)
T TIGR00259 82 LGINVLRNDAV---AALAIAMAVGAKFIRVNVLTGVYASDQGIIEGNAGELIRYKKLLGSEVKILADIVVKHAVHLGNRD 158 (257)
T ss_pred eeeeeecCCCH---HHHHHHHHhCCCEEEEccEeeeEecccccccccHHHHHHHHHHcCCCcEEEeceeecccCcCCCCC
Confidence 44445544432 34566678899999999999999988755 2333332222 122455666544444 233
Q ss_pred hHHH----HhcC-CCEEEEccCCcccccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhhhcceEEEEeecCCCCCCcc
Q 025927 131 VPDF----IKAG-ADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSF 205 (246)
Q Consensus 131 i~~~----~~ag-ad~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~~vD~VLvMsV~PGfgGQ~F 205 (246)
+++. ...| +|-|++==..+....-...++.+|+.-...-+.+.-+...+.+.++++..|-+.|-|--- ..|.-.
T Consensus 159 ~~e~a~~~~~~~~aDavivtG~~TG~~~d~~~l~~vr~~~~~~PvllggGvt~eNv~e~l~~adGviVgS~~K-~~G~~~ 237 (257)
T TIGR00259 159 LESIALDTVERGLADAVILSGKTTGTEVDLELLKLAKETVKDTPVLAGSGVNLENVEELLSIADGVIVATTIK-KDGVFN 237 (257)
T ss_pred HHHHHHHHHHhcCCCEEEECcCCCCCCCCHHHHHHHHhccCCCeEEEECCCCHHHHHHHHhhCCEEEECCCcc-cCCccC
Confidence 3332 3334 898888655432222235677777633344589999999999999999999999966542 344333
Q ss_pred cHHHHHHHHHHHHHH
Q 025927 206 IESQVKKISDLRRMC 220 (246)
Q Consensus 206 ~~~~l~KI~~lr~l~ 220 (246)
++--.+|++++-+..
T Consensus 238 n~~D~~rV~~Fm~~v 252 (257)
T TIGR00259 238 NFVDQARVSQFVEKV 252 (257)
T ss_pred CCcCHHHHHHHHHHH
Confidence 345566666665443
No 358
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=74.64 E-value=23 Score=32.63 Aligned_cols=90 Identities=13% Similarity=0.123 Sum_probs=57.8
Q ss_pred EEEec--cCcccchHHHHhcCCCEEEEc-cCCcccccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhhh-cceEEEEe
Q 025927 120 VHLMI--VEPEQRVPDFIKAGADIVSVH-CEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV-VDLVLIMS 195 (246)
Q Consensus 120 vHLMV--~~P~~~i~~~~~agad~It~H-~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~~-vD~VLvMs 195 (246)
...+. .+|..+.+.|.+.|++++++= +.+ ....-..++..|.+.+ ..|-+-=+-..+.++.+++. +|.|.+=|
T Consensus 36 ~~~y~~~~dP~~~A~~~~~~Ga~~lHvVDLdg-g~~~n~~~i~~i~~~~--~~vqvGGGIR~e~i~~~l~~Ga~rViigT 112 (262)
T PLN02446 36 VTNFESDKSAAEFAEMYKRDGLTGGHVIMLGA-DDASLAAALEALRAYP--GGLQVGGGVNSENAMSYLDAGASHVIVTS 112 (262)
T ss_pred eEEeCCCCCHHHHHHHHHHCCCCEEEEEECCC-CCcccHHHHHHHHhCC--CCEEEeCCccHHHHHHHHHcCCCEEEEch
Confidence 44555 799999999999999988763 232 1122256777777743 33333333334999999987 99999855
Q ss_pred ecCCCCCCcccHHHHHHHH
Q 025927 196 VNPGFGGQSFIESQVKKIS 214 (246)
Q Consensus 196 V~PGfgGQ~F~~~~l~KI~ 214 (246)
.- +..-+++|+.++++.
T Consensus 113 ~A--v~~~~~~p~~v~~~~ 129 (262)
T PLN02446 113 YV--FRDGQIDLERLKDLV 129 (262)
T ss_pred HH--HhCCCCCHHHHHHHH
Confidence 42 222256677666554
No 359
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=74.61 E-value=81 Score=30.09 Aligned_cols=113 Identities=13% Similarity=0.195 Sum_probs=65.2
Q ss_pred ChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCC-HHHHhhcccCCCCCeeEEEeccCc---ccchHHHHhcCCCEEE
Q 025927 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIG-PLVVDALRPVTDLPLDVHLMIVEP---EQRVPDFIKAGADIVS 143 (246)
Q Consensus 68 D~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfg-p~~I~~ir~~t~~plDvHLMV~~P---~~~i~~~~~agad~It 143 (246)
.+..+.+.++.+.+.|+..+++ .=|. |-+.-. .++++.+++..++. ++.+ +.|- .+.++.+.++|.+.|.
T Consensus 91 s~eei~~~i~~~~~~Gv~~I~~--tGGE--Pllr~dl~eli~~l~~~~gi~-~i~i-tTNG~lL~~~~~~L~~aGld~Vn 164 (373)
T PLN02951 91 SQDEIVRLAGLFVAAGVDKIRL--TGGE--PTLRKDIEDICLQLSSLKGLK-TLAM-TTNGITLSRKLPRLKEAGLTSLN 164 (373)
T ss_pred CHHHHHHHHHHHHHCCCCEEEE--ECCC--CcchhhHHHHHHHHHhcCCCc-eEEE-eeCcchHHHHHHHHHhCCCCeEE
Confidence 3455666667777889887764 4454 322211 24555565543432 3444 3342 2457888999999998
Q ss_pred EccCCccc------------ccHHHHHHHHHHcCC-cEE--EEEcCCCChHHHHHhhh
Q 025927 144 VHCEQSST------------IHLHRTLNQIKDLGA-KAG--VVLNPATSLSAIECVLD 186 (246)
Q Consensus 144 ~H~E~~~~------------~~~~~~i~~Ik~~G~-k~G--lAlnP~Tpve~l~~~l~ 186 (246)
+.+++... ....+.|+.+++.|. .+. .++.++...+++.++++
T Consensus 165 ISLDsl~~e~~~~itr~~~~~~vl~~I~~a~~~G~~~vkin~vv~~g~N~~Ei~~li~ 222 (373)
T PLN02951 165 ISLDTLVPAKFEFLTRRKGHDRVLESIDTAIELGYNPVKVNCVVMRGFNDDEICDFVE 222 (373)
T ss_pred EeeccCCHHHHHHHhcCCCHHHHHHHHHHHHHcCCCcEEEEEEecCCCCHHHHHHHHH
Confidence 88885310 123345555667775 233 35667666666666654
No 360
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=74.54 E-value=8.9 Score=35.79 Aligned_cols=78 Identities=19% Similarity=0.144 Sum_probs=47.6
Q ss_pred ChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCC---------C----CHHHHhhcccCCCCCeeEEEeccCcccchHHH
Q 025927 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNIT---------I----GPLVVDALRPVTDLPLDVHLMIVEPEQRVPDF 134 (246)
Q Consensus 68 D~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~t---------f----gp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~ 134 (246)
+.....+-++.|++.|+||+|+ ..|.|-+... . ..+..+.||+.+++|+-+==-+.+|+...+.+
T Consensus 234 ~~eea~~ia~~Le~~Gvd~iev--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~t~~~a~~~l 311 (338)
T cd04733 234 TEEDALEVVEALEEAGVDLVEL--SGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVTKTPLMVTGGFRTRAAMEQAL 311 (338)
T ss_pred CHHHHHHHHHHHHHcCCCEEEe--cCCCCCCccccccccCCccccchhhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHH
Confidence 4445556678899999999985 4455433221 1 13566778887777754433344555555444
Q ss_pred HhcCCCEEEEccC
Q 025927 135 IKAGADIVSVHCE 147 (246)
Q Consensus 135 ~~agad~It~H~E 147 (246)
.+-++|.|.+==.
T Consensus 312 ~~g~aD~V~lgR~ 324 (338)
T cd04733 312 ASGAVDGIGLARP 324 (338)
T ss_pred HcCCCCeeeeChH
Confidence 4445898887433
No 361
>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.
Probab=74.52 E-value=19 Score=31.56 Aligned_cols=98 Identities=21% Similarity=0.244 Sum_probs=56.0
Q ss_pred ecccChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCC-CCCeeEEEeccCcc---cchHHHHhcCC
Q 025927 64 ILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVT-DLPLDVHLMIVEPE---QRVPDFIKAGA 139 (246)
Q Consensus 64 Il~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t-~~plDvHLMV~~P~---~~i~~~~~aga 139 (246)
+++.|+.++++-++.+++.+ ++ +|+.-=..-=-..+|++.++.|++.. .+.+|.=++ .=|. .+++.+.+.|+
T Consensus 2 ivALD~~~~~~a~~i~~~~~-~~--v~~iKvg~~l~~~~g~~~i~~l~~~~~~i~~DlK~~-DIg~tv~~~~~~~~~~ga 77 (216)
T cd04725 2 IVALDPPDEEFALALIDALG-PY--VCAVKVGLELFEAAGPEIVKELRELGFLVFLDLKLG-DIPNTVAAAAEALLGLGA 77 (216)
T ss_pred EEEeCCCCHHHHHHHHHhcC-Cc--ccEEEECHHHHHhcCHHHHHHHHHCCCcEEEEeecC-chHHHHHHHHHHHHhcCC
Confidence 35678887777777666653 22 22221111001358999999999854 334555442 1122 35556778899
Q ss_pred CEEEEccCCcccccHHHHHHHHHHcCC
Q 025927 140 DIVSVHCEQSSTIHLHRTLNQIKDLGA 166 (246)
Q Consensus 140 d~It~H~E~~~~~~~~~~i~~Ik~~G~ 166 (246)
|++|+|.-+ ...-+..+++..++.+.
T Consensus 78 d~~Tvh~~~-G~~~l~~~~~~~~~~~~ 103 (216)
T cd04725 78 DAVTVHPYG-GSDMLKAALEAAEEKGK 103 (216)
T ss_pred CEEEECCcC-CHHHHHHHHHHHhccCC
Confidence 999999864 22334455555554443
No 362
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=74.49 E-value=35 Score=28.77 Aligned_cols=122 Identities=11% Similarity=0.152 Sum_probs=64.4
Q ss_pred eeecccChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEe--ccCcccchHHHHhcCC
Q 025927 62 PSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLM--IVEPEQRVPDFIKAGA 139 (246)
Q Consensus 62 PSIl~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLM--V~~P~~~i~~~~~aga 139 (246)
.-+|..|. ++.++.+.++|+|++++-. +.. +.. ...++.+|+. +..+- ++ ..+|...++.+. .++
T Consensus 61 v~lm~~~~---~~~~~~~~~~gadgv~vh~--~~~-~~~---~~~~~~~~~~-g~~~~--~~~~~~t~~e~~~~~~-~~~ 127 (210)
T TIGR01163 61 VHLMVENP---DRYIEDFAEAGADIITVHP--EAS-EHI---HRLLQLIKDL-GAKAG--IVLNPATPLEFLEYVL-PDV 127 (210)
T ss_pred EEeeeCCH---HHHHHHHHHcCCCEEEEcc--CCc-hhH---HHHHHHHHHc-CCcEE--EEECCCCCHHHHHHHH-hhC
Confidence 44555554 4568888899999966521 111 111 3455666554 33222 33 334555565553 368
Q ss_pred CEEEEc---cCCcc---cccHHHHHHHHHHc----CCcEEEEEcCCCChHHHHHhhhh-cceEEEEee
Q 025927 140 DIVSVH---CEQSS---TIHLHRTLNQIKDL----GAKAGVVLNPATSLSAIECVLDV-VDLVLIMSV 196 (246)
Q Consensus 140 d~It~H---~E~~~---~~~~~~~i~~Ik~~----G~k~GlAlnP~Tpve~l~~~l~~-vD~VLvMsV 196 (246)
|++.+- .-.+. .....+.++++++. +...-+++-.+-..+.+.+++.. +|.+.+.+-
T Consensus 128 d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI~~env~~l~~~gad~iivgsa 195 (210)
T TIGR01163 128 DLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVDGGVNDDNARELAEAGADILVAGSA 195 (210)
T ss_pred CEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCcCHHHHHHHHHcCCCEEEEChH
Confidence 886652 21111 11122344445432 12233555556667888887765 898777654
No 363
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=74.47 E-value=44 Score=30.97 Aligned_cols=81 Identities=10% Similarity=0.087 Sum_probs=47.0
Q ss_pred cccHHHHHHHHHHcCCcEEEEEcCCCCh--HHHHHhhhhcceEEEEe----------ecCCCCCCc--ccHHHHHHHHH-
Q 025927 151 TIHLHRTLNQIKDLGAKAGVVLNPATSL--SAIECVLDVVDLVLIMS----------VNPGFGGQS--FIESQVKKISD- 215 (246)
Q Consensus 151 ~~~~~~~i~~Ik~~G~k~GlAlnP~Tpv--e~l~~~l~~vD~VLvMs----------V~PGfgGQ~--F~~~~l~KI~~- 215 (246)
-+++.++++.+|+.|+|+-+.++|.... ..+++..+ -++. |-. +-||.++-. ++|++.+=-.+
T Consensus 72 FPdp~~mi~~L~~~g~k~~~~i~P~i~~~~~~y~e~~~-~g~~-v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~ 149 (317)
T cd06599 72 FPDPAAFVAKFHERGIRLAPNIKPGLLQDHPRYKELKE-AGAF-IKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEG 149 (317)
T ss_pred CCCHHHHHHHHHHCCCEEEEEeCCcccCCCHHHHHHHH-CCcE-EEcCCCCCcceecccCCCeEeecCCChHHHHHHHHH
Confidence 4678999999999999999999998654 23333322 2322 221 223333221 46777665533
Q ss_pred HHHHHHhcCCCCeEEEeCC
Q 025927 216 LRRMCLEKGVNPWIEVDGG 234 (246)
Q Consensus 216 lr~l~~~~~~~~~I~VDGG 234 (246)
+++.+.+.|.+. +..|.|
T Consensus 150 ~~~~~~~~Gvdg-~w~D~~ 167 (317)
T cd06599 150 VKEALLDLGIDS-TWNDNN 167 (317)
T ss_pred HHHHHhcCCCcE-EEecCC
Confidence 335544555543 566665
No 364
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=74.34 E-value=24 Score=30.59 Aligned_cols=119 Identities=19% Similarity=0.192 Sum_probs=61.4
Q ss_pred ccChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhccc----CCCCCeeE---EEec--------cCcccc
Q 025927 66 SANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRP----VTDLPLDV---HLMI--------VEPEQR 130 (246)
Q Consensus 66 ~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~----~t~~plDv---HLMV--------~~P~~~ 130 (246)
..-...+ ++++++.+.|++.+- .......+ |+.++.+.+ ...+.+|+ .+.+ .+|..+
T Consensus 80 ~GGI~~~-ed~~~~~~~Ga~~vi---lg~~~l~~----~~~l~ei~~~~~~~i~vsid~k~~~v~~~g~~~~~~~~~~e~ 151 (233)
T PRK00748 80 GGGIRSL-ETVEALLDAGVSRVI---IGTAAVKN----PELVKEACKKFPGKIVVGLDARDGKVATDGWLETSGVTAEDL 151 (233)
T ss_pred cCCcCCH-HHHHHHHHcCCCEEE---ECchHHhC----HHHHHHHHHHhCCCceeeeeccCCEEEEccCeecCCCCHHHH
Confidence 3333333 566777777888753 22222232 344444322 11234443 1222 245677
Q ss_pred hHHHHhcCCCEEEEccCCc----ccccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhhh--cceEEE
Q 025927 131 VPDFIKAGADIVSVHCEQS----STIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV--VDLVLI 193 (246)
Q Consensus 131 i~~~~~agad~It~H~E~~----~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~~--vD~VLv 193 (246)
++.+.+.|++.|.+|-..- ...+ .++++.+++.--..=++-.--.+.++++.++.. +|-|++
T Consensus 152 ~~~~~~~g~~~ii~~~~~~~g~~~G~d-~~~i~~l~~~~~ipvia~GGi~~~~di~~~~~~g~~~gv~v 219 (233)
T PRK00748 152 AKRFEDAGVKAIIYTDISRDGTLSGPN-VEATRELAAAVPIPVIASGGVSSLDDIKALKGLGAVEGVIV 219 (233)
T ss_pred HHHHHhcCCCEEEEeeecCcCCcCCCC-HHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCccEEEE
Confidence 7888888999888884321 0112 345566655321222333333666777777663 677665
No 365
>PRK00979 tetrahydromethanopterin S-methyltransferase subunit H; Provisional
Probab=74.20 E-value=20 Score=33.87 Aligned_cols=21 Identities=14% Similarity=0.347 Sum_probs=13.9
Q ss_pred HHHHHHHcCCc--EEEEEcCCCC
Q 025927 157 TLNQIKDLGAK--AGVVLNPATS 177 (246)
Q Consensus 157 ~i~~Ik~~G~k--~GlAlnP~Tp 177 (246)
.+..+|+.|+. ++|+++++-|
T Consensus 138 el~llk~yg~aavIvLa~d~~~p 160 (308)
T PRK00979 138 EIEALKESDIKAAIVLAFDPMDP 160 (308)
T ss_pred HHHHHHHhCCceEEEEEcCCCCC
Confidence 36777777765 5666776644
No 366
>PRK15452 putative protease; Provisional
Probab=74.18 E-value=13 Score=36.65 Aligned_cols=104 Identities=19% Similarity=0.106 Sum_probs=63.8
Q ss_pred eEEEeccCcccchHHHHhcCCCEEEEccCC---------cccccHHHHHHHHHHcCCcEEEEEcCCCChHHH---HHhhh
Q 025927 119 DVHLMIVEPEQRVPDFIKAGADIVSVHCEQ---------SSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAI---ECVLD 186 (246)
Q Consensus 119 DvHLMV~~P~~~i~~~~~agad~It~H~E~---------~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l---~~~l~ 186 (246)
+...-+.+++. ++..+++|||.|.+=.+. .+.+++.+.++++|++|.|+-+++|.-..-+.+ .+++.
T Consensus 5 eLlapag~~e~-l~aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt~n~i~~e~el~~~~~~l~ 83 (443)
T PRK15452 5 ELLSPAGTLKN-MRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVVVNIAPHNAKLKTFIRDLE 83 (443)
T ss_pred EEEEECCCHHH-HHHHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEEecCcCCHHHHHHHHHHHH
Confidence 34444555444 345577899999995442 123568889999999999999998865544444 33343
Q ss_pred h-----cceEEEEeecCCCCCCcccHHHHHHHHHHHHHHHhcCCCCeEEEeCCCChhhhh
Q 025927 187 V-----VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAY 241 (246)
Q Consensus 187 ~-----vD~VLvMsV~PGfgGQ~F~~~~l~KI~~lr~l~~~~~~~~~I~VDGGI~~e~i~ 241 (246)
. +|-|+|- +|| .+ +.+++. ..+..|.+|-..|..|..
T Consensus 84 ~l~~~gvDgvIV~--d~G---------~l---~~~ke~----~p~l~ih~stqlni~N~~ 125 (443)
T PRK15452 84 PVIAMKPDALIMS--DPG---------LI---MMVREH----FPEMPIHLSVQANAVNWA 125 (443)
T ss_pred HHHhCCCCEEEEc--CHH---------HH---HHHHHh----CCCCeEEEEecccCCCHH
Confidence 2 5665553 233 23 233332 234567778777766654
No 367
>PLN02826 dihydroorotate dehydrogenase
Probab=74.03 E-value=47 Score=32.40 Aligned_cols=108 Identities=16% Similarity=0.217 Sum_probs=70.5
Q ss_pred cccchHHHHhcC--CCEEEEccCCc---------ccccHHHHHHHHHHc----------CCcEEEEEcCCCChHHHHHhh
Q 025927 127 PEQRVPDFIKAG--ADIVSVHCEQS---------STIHLHRTLNQIKDL----------GAKAGVVLNPATSLSAIECVL 185 (246)
Q Consensus 127 P~~~i~~~~~ag--ad~It~H~E~~---------~~~~~~~~i~~Ik~~----------G~k~GlAlnP~Tpve~l~~~l 185 (246)
++.|+..+..++ ||++.+-+-+- ..+.+.++++.+++. ...+-+=|.|+.+.+.+..+.
T Consensus 203 ~~Dy~~~~~~~~~~aDylelNiScPNtpglr~lq~~~~l~~ll~~V~~~~~~~~~~~~~~~Pv~vKlaPdl~~~di~~ia 282 (409)
T PLN02826 203 AADYVQGVRALSQYADYLVINVSSPNTPGLRKLQGRKQLKDLLKKVLAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIA 282 (409)
T ss_pred HHHHHHHHHHHhhhCCEEEEECCCCCCCCcccccChHHHHHHHHHHHHHHHHhhhccccCCceEEecCCCCCHHHHHHHH
Confidence 566776665555 89998764310 012345666666532 355677778888766655544
Q ss_pred h-----hcceEEEEe------e---------cC-CCCCCcccHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCh
Q 025927 186 D-----VVDLVLIMS------V---------NP-GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP 237 (246)
Q Consensus 186 ~-----~vD~VLvMs------V---------~P-GfgGQ~F~~~~l~KI~~lr~l~~~~~~~~~I~VDGGI~~ 237 (246)
+ .+|-|.+-- . +. |.+|-+..+.+++-|+++++..+. ++.|..+|||..
T Consensus 283 ~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~---~ipIIgvGGI~s 352 (409)
T PLN02826 283 AVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRG---KIPLVGCGGVSS 352 (409)
T ss_pred HHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCC---CCcEEEECCCCC
Confidence 3 278776632 0 11 578999999999999888877642 367999999964
No 368
>PRK15447 putative protease; Provisional
Probab=73.95 E-value=17 Score=33.57 Aligned_cols=98 Identities=11% Similarity=-0.030 Sum_probs=62.5
Q ss_pred ccCcccchHHHHhcCCCEEEEccCC------cccccHHHHHHHHHHcCCcEEEEEcCCC----ChHHHHHhhhh-cceEE
Q 025927 124 IVEPEQRVPDFIKAGADIVSVHCEQ------SSTIHLHRTLNQIKDLGAKAGVVLNPAT----SLSAIECVLDV-VDLVL 192 (246)
Q Consensus 124 V~~P~~~i~~~~~agad~It~H~E~------~~~~~~~~~i~~Ik~~G~k~GlAlnP~T----pve~l~~~l~~-vD~VL 192 (246)
..+.+.+...+.+.|||.|.+=.+. .+.+++.+.++.+|++|.|+.++++.=+ ..+.+.++++. .|.|+
T Consensus 14 ~~~~~~~~~~~~~~gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~gkkvyva~p~i~~~~~e~~~l~~~l~~~~~~v~ 93 (301)
T PRK15447 14 KETVRDFYQRAADSPVDIVYLGETVCSKRRELKVGDWLELAERLAAAGKEVVLSTLALVEAPSELKELRRLVENGEFLVE 93 (301)
T ss_pred CCCHHHHHHHHHcCCCCEEEECCccCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccccCHHHHHHHHHHHhcCCCEEE
Confidence 4455667777778899999997553 2346788999999999999999987643 23455555543 23222
Q ss_pred EEeecCCCCCCcccHHHHHHHHHHHHHHHhcCCCCeEEEeCCCChhhhh
Q 025927 193 IMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAY 241 (246)
Q Consensus 193 vMsV~PGfgGQ~F~~~~l~KI~~lr~l~~~~~~~~~I~VDGGI~~e~i~ 241 (246)
.-++ ..+ +.+++ . +..+.+|=++|.-|..
T Consensus 94 --v~d~---------g~l---~~~~e----~--~~~l~~d~~lni~N~~ 122 (301)
T PRK15447 94 --ANDL---------GAV---RLLAE----R--GLPFVAGPALNCYNAA 122 (301)
T ss_pred --EeCH---------HHH---HHHHh----c--CCCEEEecccccCCHH
Confidence 2222 233 33333 1 3457888888776654
No 369
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=73.70 E-value=13 Score=32.25 Aligned_cols=70 Identities=21% Similarity=0.183 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHcCCCEEE-eee-ccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEEE
Q 025927 71 KLGEQVKAVELAGCDWIH-VDV-MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSV 144 (246)
Q Consensus 71 ~l~~~i~~l~~~g~d~lH-iDI-MDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It~ 144 (246)
...+.++.+++.|++++| .|+ .||.. .....+.++.+++.++.|+-+-==+.+++... .+.+.|++.+.+
T Consensus 146 ~~~~~~~~~~~~g~~~ii~~~~~~~g~~---~g~~~~~i~~i~~~~~ipvia~GGi~~~~di~-~~~~~Gadgv~i 217 (230)
T TIGR00007 146 SLEELAKRLEELGLEGIIYTDISRDGTL---SGPNFELTKELVKAVNVPVIASGGVSSIDDLI-ALKKLGVYGVIV 217 (230)
T ss_pred CHHHHHHHHHhCCCCEEEEEeecCCCCc---CCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHH-HHHHCCCCEEEE
Confidence 445667778889999877 444 45543 23456778888887788888877788877755 455788887765
No 370
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=73.69 E-value=9.7 Score=35.39 Aligned_cols=79 Identities=23% Similarity=0.329 Sum_probs=69.4
Q ss_pred hhhHHHHHHHHHHcCCCEEEeee--ccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEEEcc
Q 025927 69 FAKLGEQVKAVELAGCDWIHVDV--MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHC 146 (246)
Q Consensus 69 ~~~l~~~i~~l~~~g~d~lHiDI--MDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It~H~ 146 (246)
+.+.++-.+.+++.|+|+|=+-| .=|.|...-.+.++.++.|++.+++|+..|==.--|+..+.+.++.|+.-|-+.-
T Consensus 155 yT~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~L~~~~L~~I~~~~~iPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~T 234 (285)
T PRK07709 155 YADPAECKHLVEATGIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFTGVPLVLHGGTGIPTADIEKAISLGTSKINVNT 234 (285)
T ss_pred CCCHHHHHHHHHHhCCCEEEEeecccccCcCCCCccCHHHHHHHHHHHCCCEEEeCCCCCCHHHHHHHHHcCCeEEEeCh
Confidence 67888888899999999999988 7888844344666899999998899999999999999999999999999999987
Q ss_pred C
Q 025927 147 E 147 (246)
Q Consensus 147 E 147 (246)
|
T Consensus 235 ~ 235 (285)
T PRK07709 235 E 235 (285)
T ss_pred H
Confidence 7
No 371
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=73.57 E-value=13 Score=33.99 Aligned_cols=74 Identities=15% Similarity=0.293 Sum_probs=47.9
Q ss_pred HHHHHHHHHHc---CCcEEEEEcCCCChHHHHHhhh-hcceEEEEeecCCCCCCcccHHHHHHHHHHHHHHHhcCCCCeE
Q 025927 154 LHRTLNQIKDL---GAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWI 229 (246)
Q Consensus 154 ~~~~i~~Ik~~---G~k~GlAlnP~Tpve~l~~~l~-~vD~VLvMsV~PGfgGQ~F~~~~l~KI~~lr~l~~~~~~~~~I 229 (246)
....++.+|+. +.++|+-.+ .++.+...+. .+|+|++ .+|-|+.++++. +.++. ...|
T Consensus 164 ~~~av~~~r~~~~~~~~Igvev~---t~eea~~A~~~gaDyI~l---------d~~~~e~lk~~v---~~~~~---~ipi 225 (265)
T TIGR00078 164 IEKAVKRARAAAPFALKIEVEVE---SLEEAEEAAEAGADIIML---------DNMKPEEIKEAV---QLLKG---RVLL 225 (265)
T ss_pred HHHHHHHHHHhCCCCCeEEEEeC---CHHHHHHHHHcCCCEEEE---------CCCCHHHHHHHH---HHhcC---CCcE
Confidence 44567777764 467777775 4455555443 5899888 234455554443 33322 2569
Q ss_pred EEeCCCChhhhhhccc
Q 025927 230 EVDGGVGPKNAYKVPN 245 (246)
Q Consensus 230 ~VDGGI~~e~i~~l~~ 245 (246)
++=||||.+|++++.+
T Consensus 226 ~AsGGI~~~ni~~~a~ 241 (265)
T TIGR00078 226 EASGGITLDNLEEYAE 241 (265)
T ss_pred EEECCCCHHHHHHHHH
Confidence 9999999999998764
No 372
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=73.55 E-value=60 Score=29.48 Aligned_cols=138 Identities=18% Similarity=0.161 Sum_probs=77.9
Q ss_pred hhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHH---HhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEEEcc
Q 025927 70 AKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLV---VDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHC 146 (246)
Q Consensus 70 ~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~---I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It~H~ 146 (246)
..--+-++.|.++|++.+=+= + |. .+|.. ++.+.+. ...-.+.-+..--.+.++...++|++.|.+-.
T Consensus 22 ~~k~~i~~~L~~~Gv~~IEvG----~--P~--~~~~~~~~~~~l~~~-~~~~~v~~~~r~~~~di~~a~~~g~~~i~i~~ 92 (262)
T cd07948 22 EDKIEIAKALDAFGVDYIELT----S--PA--ASPQSRADCEAIAKL-GLKAKILTHIRCHMDDARIAVETGVDGVDLVF 92 (262)
T ss_pred HHHHHHHHHHHHcCCCEEEEE----C--CC--CCHHHHHHHHHHHhC-CCCCcEEEEecCCHHHHHHHHHcCcCEEEEEE
Confidence 334466788899999876553 1 32 23433 3333322 12223332222224568888999999877743
Q ss_pred CCc--------------ccccHHHHHHHHHHcCCcEEEEEc--CCCChHHHHHhhhh-----cceEEEEeecCCCCCCcc
Q 025927 147 EQS--------------STIHLHRTLNQIKDLGAKAGVVLN--PATSLSAIECVLDV-----VDLVLIMSVNPGFGGQSF 205 (246)
Q Consensus 147 E~~--------------~~~~~~~~i~~Ik~~G~k~GlAln--P~Tpve~l~~~l~~-----vD~VLvMsV~PGfgGQ~F 205 (246)
=.+ ..+...+.+++.|+.|+++.+.+. -.+|.+.+.+++.. +|.|.+ +.-.|...
T Consensus 93 ~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l----~Dt~G~~~ 168 (262)
T cd07948 93 GTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRVYRAVDKLGVNRVGI----ADTVGIAT 168 (262)
T ss_pred ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEE----CCcCCCCC
Confidence 100 122355677888999999877773 33667777776654 443322 23345555
Q ss_pred cHHHHHHHHHHHHHH
Q 025927 206 IESQVKKISDLRRMC 220 (246)
Q Consensus 206 ~~~~l~KI~~lr~l~ 220 (246)
-..+.+.++.+|+..
T Consensus 169 P~~v~~~~~~~~~~~ 183 (262)
T cd07948 169 PRQVYELVRTLRGVV 183 (262)
T ss_pred HHHHHHHHHHHHHhc
Confidence 556666666666543
No 373
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=73.48 E-value=11 Score=35.73 Aligned_cols=102 Identities=26% Similarity=0.302 Sum_probs=59.7
Q ss_pred cChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHH--HhcCCCEEEE
Q 025927 67 ANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDF--IKAGADIVSV 144 (246)
Q Consensus 67 aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~--~~agad~It~ 144 (246)
.|+..+.+-++++.++|+|++-+==+=|...|+-.. +.++.+++..+.++.+|.=-..=......+ .++||++|..
T Consensus 139 ~~~~~l~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~--~lv~~l~~~~~v~l~~H~HNd~GlA~ANalaA~~aGa~~vd~ 216 (365)
T TIGR02660 139 ADPDFLVELAEVAAEAGADRFRFADTVGILDPFSTY--ELVRALRQAVDLPLEMHAHNDLGMATANTLAAVRAGATHVNT 216 (365)
T ss_pred CCHHHHHHHHHHHHHcCcCEEEEcccCCCCCHHHHH--HHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhCCCEEEE
Confidence 566777788888888888886554445655554221 355666666567888887543332222222 5678887643
Q ss_pred cc----CCcccccHHHHHHHH-HHcCCcEEE
Q 025927 145 HC----EQSSTIHLHRTLNQI-KDLGAKAGV 170 (246)
Q Consensus 145 H~----E~~~~~~~~~~i~~I-k~~G~k~Gl 170 (246)
=+ |......++.++..+ +..|...|+
T Consensus 217 tl~GiGeraGN~~lE~lv~~L~~~~g~~~~i 247 (365)
T TIGR02660 217 TVNGLGERAGNAALEEVAMALKRLLGRDTGI 247 (365)
T ss_pred EeeccccccccCCHHHHHHHHHHhcCCCCCc
Confidence 32 221233466666666 556766554
No 374
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=73.40 E-value=14 Score=28.22 Aligned_cols=77 Identities=19% Similarity=0.280 Sum_probs=53.4
Q ss_pred HHHHHHcCCcEEEEEcCCCChHHHHHhhhhcc--eEEE-EeecCCCCC-CcccHHHHHHHHHHHHHHHhcCCCCeEEEeC
Q 025927 158 LNQIKDLGAKAGVVLNPATSLSAIECVLDVVD--LVLI-MSVNPGFGG-QSFIESQVKKISDLRRMCLEKGVNPWIEVDG 233 (246)
Q Consensus 158 i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~~vD--~VLv-MsV~PGfgG-Q~F~~~~l~KI~~lr~l~~~~~~~~~I~VDG 233 (246)
+..+++.+.|+.+--.-++.-..+..++..+- .+.+ ...+|.|++ ..-.|.. +-+..+++...+.+.++-+..||
T Consensus 14 ~~~~~~~~~kivvD~~~G~~~~~~~~ll~~lg~~~~~~n~~~d~~f~~~~~p~p~~-~~l~~~~~~v~~~~ad~g~~~Dg 92 (104)
T PF02879_consen 14 LEAIKKSGLKIVVDCMNGAGSDILPRLLERLGCDVIELNCDPDPDFPNQHAPNPEE-ESLQRLIKIVRESGADLGIAFDG 92 (104)
T ss_dssp HHHHHHTTCEEEEE-TTSTTHHHHHHHHHHTTCEEEEESSS-STTGTTTSTSSTST-TTTHHHHHHHHHSTTSEEEEE-T
T ss_pred hhhcccCCCEEEEECCCCHHHHHHHHHHHHcCCcEEEEeccccccccccccccccc-chhHHHHHHhhccCceEEEEECC
Confidence 45678899999998888899888888888744 4443 224456887 4555544 55667777777888888899998
Q ss_pred CC
Q 025927 234 GV 235 (246)
Q Consensus 234 GI 235 (246)
--
T Consensus 93 Da 94 (104)
T PF02879_consen 93 DA 94 (104)
T ss_dssp TS
T ss_pred cC
Confidence 54
No 375
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=73.38 E-value=26 Score=35.93 Aligned_cols=117 Identities=21% Similarity=0.235 Sum_probs=74.2
Q ss_pred CCCeeEEEeccCccc-------chHHHHhcCCCEEEEccCCc-ccccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhh
Q 025927 115 DLPLDVHLMIVEPEQ-------RVPDFIKAGADIVSVHCEQS-STIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD 186 (246)
Q Consensus 115 ~~plDvHLMV~~P~~-------~i~~~~~agad~It~H~E~~-~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~ 186 (246)
+-|+-|.=|+..+.. .+..+.++|+++|-+=+-.. ..+.+.++-+.+++.|+.+=|+-.-......-...++
T Consensus 28 ~~PI~VQSMt~t~T~D~~atv~Qi~~L~~aGceiVRvtvp~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~A~~a~~ 107 (606)
T PRK00694 28 EHSIKIQSMTTTATTDVDGTVRQICALQEWGCDIVRVTVQGLKEAQACEHIKERLIQQGISIPLVADIHFFPQAAMHVAD 107 (606)
T ss_pred CCceEEEecCCCCcccHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhccCCCCCEEeecCCChHHHHHHHH
Confidence 468889999887664 45677889999776654321 1223444555556668877776666555544444444
Q ss_pred hcceEEEEeecCCCCCC--c-cc-------------HHHHHHHHHHHHHHHhcCCCCeEEEeCC
Q 025927 187 VVDLVLIMSVNPGFGGQ--S-FI-------------ESQVKKISDLRRMCLEKGVNPWIEVDGG 234 (246)
Q Consensus 187 ~vD~VLvMsV~PGfgGQ--~-F~-------------~~~l~KI~~lr~l~~~~~~~~~I~VDGG 234 (246)
.+|. .-+|||--|- + |. ...-+|++.+-+...++|.-..|.|-.|
T Consensus 108 ~vdk---iRINPGNi~~~~k~F~~~~YtDeeY~~el~~I~e~~~~vV~~ake~~~~IRIGvN~G 168 (606)
T PRK00694 108 FVDK---VRINPGNYVDKRNMFTGKIYTDEQYAHSLLRLEEKFSPLVEKCKRLGKAMRIGVNHG 168 (606)
T ss_pred hcCc---eEECCcccCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEecCCc
Confidence 4554 4679995443 1 32 2234677778888888888888988655
No 376
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=73.34 E-value=7.3 Score=37.64 Aligned_cols=54 Identities=17% Similarity=0.330 Sum_probs=40.4
Q ss_pred ccHHHHHHHHHHcCCcEEEEEcC---CCChHHHHHhhhhcceEEEEee--cCCCCCCcc
Q 025927 152 IHLHRTLNQIKDLGAKAGVVLNP---ATSLSAIECVLDVVDLVLIMSV--NPGFGGQSF 205 (246)
Q Consensus 152 ~~~~~~i~~Ik~~G~k~GlAlnP---~Tpve~l~~~l~~vD~VLvMsV--~PGfgGQ~F 205 (246)
......++.+|+.|.|+|+.==. -.|.+.+.+++..++.|+|+-- .+|.+|+-|
T Consensus 274 ~~~keav~~LR~~G~kVGllri~~~rPFP~~~i~~~l~~~k~ViVvE~n~s~g~~g~l~ 332 (394)
T PRK08367 274 GTLKEFVDKLREEGYKVGAAKLTVYRPFPVEEIRALAKKAKVLAFLEKNISFGLGGAVF 332 (394)
T ss_pred HHHHHHHHHHHhcCCcceeEEEeEecCCCHHHHHHHHccCCEEEEEeCCCCCCCCCcHH
Confidence 45778899999999999984211 2567889999999999998544 467666543
No 377
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=73.32 E-value=59 Score=34.20 Aligned_cols=114 Identities=23% Similarity=0.299 Sum_probs=72.4
Q ss_pred CCCeeEEEeccCccc-------chHHHHhcCCCEEEEccCCcccccHHHHHHHHH----HcCCcEEEEEcCCCChHHHHH
Q 025927 115 DLPLDVHLMIVEPEQ-------RVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIK----DLGAKAGVVLNPATSLSAIEC 183 (246)
Q Consensus 115 ~~plDvHLMV~~P~~-------~i~~~~~agad~It~H~E~~~~~~~~~~i~~Ik----~~G~k~GlAlnP~Tpve~l~~ 183 (246)
+-|+-|.=|+..+.. .+..+.++|+++|-+=+-. ..-.+.+..|| +.|+.+=|+-.-.........
T Consensus 93 ~~PI~VQSMt~t~T~D~eatv~Qi~~l~~aGceiVRvtv~~---~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~ 169 (733)
T PLN02925 93 EHPIRIQTMTTTDTKDVEATVDQVMRIADKGADIVRITVQG---KKEADACFEIKNTLVQKGYNIPLVADIHFAPSVALR 169 (733)
T ss_pred CCceEEEecCCCCcccHHHHHHHHHHHHHcCCCEEEEcCCC---HHHHHhHHHHHHHHhhcCCCCCEEEecCCCHHHHHH
Confidence 468899999887654 4567788999977765532 12233444454 458777677666665555545
Q ss_pred hhhhcceEEEEeecCCCCCCc---cc---------HHHHHHHH----HHHHHHHhcCCCCeEEEeCC
Q 025927 184 VLDVVDLVLIMSVNPGFGGQS---FI---------ESQVKKIS----DLRRMCLEKGVNPWIEVDGG 234 (246)
Q Consensus 184 ~l~~vD~VLvMsV~PGfgGQ~---F~---------~~~l~KI~----~lr~l~~~~~~~~~I~VDGG 234 (246)
.++.+|. .-+|||--|.+ |. .+-++||+ .+-+.+.++|.-..|.|-.|
T Consensus 170 a~~~vdk---iRINPGN~~~~~k~F~~~eYtdeeY~~Ele~i~e~f~~~v~~ak~~~~~iRIGvN~G 233 (733)
T PLN02925 170 VAECFDK---IRVNPGNFADRRAQFEKLEYTEDDYQKELEHIEEVFTPLVEKCKKYGRAMRIGTNHG 233 (733)
T ss_pred HHHhcCC---eEECCcccCCccccccccccchhhhhhhHHHHHHHHHHHHHHHHHCCCCEEEecCCc
Confidence 5555555 46799954433 52 22244454 47788888888888888655
No 378
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=73.17 E-value=55 Score=28.55 Aligned_cols=119 Identities=18% Similarity=0.189 Sum_probs=71.1
Q ss_pred Eeeeeccc-ChhhHHHHHHHHHHcCCCE--EEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccC--------cc
Q 025927 60 VSPSILSA-NFAKLGEQVKAVELAGCDW--IHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVE--------PE 128 (246)
Q Consensus 60 IsPSIl~a-D~~~l~~~i~~l~~~g~d~--lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~--------P~ 128 (246)
|+.++... +..+..++++... |+|. +=+|...... ..--...++.||+.+++|+-+++=... ..
T Consensus 2 i~~~i~~~~~~~e~~~~~~~~~--~aD~vElR~D~~~~~~---~~~~~~~~~~lr~~~~~piI~T~R~~~eGG~~~~~~~ 76 (225)
T cd00502 2 ICVPLTGPDLLEEALSLLELLL--GADAVELRVDLLEDPS---IDDVAEQLSLLRELTPLPIIFTVRTKSEGGNFEGSEE 76 (225)
T ss_pred EEEEecCCCCHHHHHHHHHHhc--CCCEEEEEEeeccccc---hHHHHHHHHHHHHhCCCCEEEEEcccccCCCcCCCHH
Confidence 44555544 4444444433332 7887 4556654432 112345788888887789998887653 22
Q ss_pred cch---HHHHhcCCCEEEEccCCcccccHHHHHHHHHHcCCcEEEEEcCC--CC-hHHHHHhhh
Q 025927 129 QRV---PDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPA--TS-LSAIECVLD 186 (246)
Q Consensus 129 ~~i---~~~~~agad~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~--Tp-ve~l~~~l~ 186 (246)
.|+ +...+.|+++|.+-++. ..+.+++..+++.|.|+=+...-- || .+.+...+.
T Consensus 77 ~~~~ll~~~~~~~~d~vDiEl~~---~~~~~~~~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~ 137 (225)
T cd00502 77 EYLELLEEALKLGPDYVDIELDS---ALLEELINSRKKGNTKIIGSYHDFSGTPSDEELVSRLE 137 (225)
T ss_pred HHHHHHHHHHHHCCCEEEEEecc---hHHHHHHHHHHhCCCEEEEEeccCCCCcCHHHHHHHHH
Confidence 344 34456689999987652 356677877777888877766432 43 345544443
No 379
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=73.04 E-value=93 Score=30.07 Aligned_cols=154 Identities=14% Similarity=0.166 Sum_probs=84.8
Q ss_pred cccChhhHHHHHHHHHHcCCCEEEe-eeccCcccCCCCC------CHHHHhhcccCCCCCeeEEEeccCcc----cchHH
Q 025927 65 LSANFAKLGEQVKAVELAGCDWIHV-DVMDGRFVPNITI------GPLVVDALRPVTDLPLDVHLMIVEPE----QRVPD 133 (246)
Q Consensus 65 l~aD~~~l~~~i~~l~~~g~d~lHi-DIMDG~FVpN~tf------gp~~I~~ir~~t~~plDvHLMV~~P~----~~i~~ 133 (246)
.+-++.++.+|++.+.+.|++.+-+ |.-=+.|-..++. =.+.++.+.+..++ .-+.+...+|. ..++.
T Consensus 154 ~sr~~e~I~~Ei~~l~~~G~keI~l~~~~~~~yg~d~~~~~~~~~l~~Ll~~l~~~~g~-~~ir~~s~~p~~~~~ell~~ 232 (420)
T PRK14339 154 ISIPMDLILKEAEKAVNNGAKEIFLLGQNVNNYGKRFSSEHEKVDFSDLLDKLSEIEGL-ERIRFTSPHPLHMDDKFLEE 232 (420)
T ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEeeeccccccCCCcCCcccccHHHHHHHHhcCCCc-cEEEECCCChhhcCHHHHHH
Confidence 3557889999999999899988875 2211122111110 13455555544333 23566656776 35666
Q ss_pred HHhc--CCCEEEEccCCcc------------cccHHHHHHHHHHc--CCcEE--EEEc-CCCChHHHHHhhhh-----cc
Q 025927 134 FIKA--GADIVSVHCEQSS------------TIHLHRTLNQIKDL--GAKAG--VVLN-PATSLSAIECVLDV-----VD 189 (246)
Q Consensus 134 ~~~a--gad~It~H~E~~~------------~~~~~~~i~~Ik~~--G~k~G--lAln-P~Tpve~l~~~l~~-----vD 189 (246)
+.++ |+..+.+-+|+.+ ..+..+.++.+|+. |+.++ +.+. |+-..++++..++. .|
T Consensus 233 ~~~~~~~~~~l~iglQSgsd~vLk~M~R~~t~~~~~~~v~~lr~~~p~i~i~~d~IvGfPgETeedf~~Tl~fl~~l~~~ 312 (420)
T PRK14339 233 FAKNPKICKSIHMPLQSGSSEILKAMKRGYTKEWFLNRAEKLRALVPEVSISTDIIVGFPGESDKDFEDTMDVLEKVRFE 312 (420)
T ss_pred HHcCCCccCceEeCCccCCHHHHHhccCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCHHHHHHHHHHHHhcCCC
Confidence 6666 5788999899742 12355677888887 43332 2233 66666666554443 55
Q ss_pred eEEE--EeecCCCC-----CCcccHHHHHHHHHHHHH
Q 025927 190 LVLI--MSVNPGFG-----GQSFIESQVKKISDLRRM 219 (246)
Q Consensus 190 ~VLv--MsV~PGfg-----GQ~F~~~~l~KI~~lr~l 219 (246)
.+.+ .|-.||-. +|-=.+..-+|.++|+++
T Consensus 313 ~~~~f~~sp~pGT~a~~~~~~v~~~~k~~R~~~l~~~ 349 (420)
T PRK14339 313 QIFSFKYSPRPLTEAAAWKNQVDEEVASERLERLQNR 349 (420)
T ss_pred EEeeEecCCCCCCchhhCCCCCCHHHHHHHHHHHHHH
Confidence 5544 44456632 332223344445555443
No 380
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=72.94 E-value=12 Score=34.26 Aligned_cols=74 Identities=18% Similarity=0.167 Sum_probs=39.8
Q ss_pred ChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCC-CCCeeEEEeccCcccchHHH--HhcCCCEEE
Q 025927 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVT-DLPLDVHLMIVEPEQRVPDF--IKAGADIVS 143 (246)
Q Consensus 68 D~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t-~~plDvHLMV~~P~~~i~~~--~~agad~It 143 (246)
++..+.+.++++.+.|+|.|.+==+-|...|.-.. +.++.+++.. +.++.+|.=-..=......+ .++|+++|-
T Consensus 147 ~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~--~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN~laA~~aGa~~id 223 (274)
T cd07938 147 PPERVAEVAERLLDLGCDEISLGDTIGVATPAQVR--RLLEAVLERFPDEKLALHFHDTRGQALANILAALEAGVRRFD 223 (274)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCccCHHHHH--HHHHHHHHHCCCCeEEEEECCCCChHHHHHHHHHHhCCCEEE
Confidence 55566666677777777777666666666554221 2455555432 46666666433322222222 456666543
No 381
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=72.74 E-value=13 Score=35.69 Aligned_cols=108 Identities=17% Similarity=0.136 Sum_probs=61.8
Q ss_pred ccchHHHHhcCCC-EEEEccCCcccccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhhhcceEEEEeecCCCCCCccc
Q 025927 128 EQRVPDFIKAGAD-IVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFI 206 (246)
Q Consensus 128 ~~~i~~~~~agad-~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~~vD~VLvMsV~PGfgGQ~F~ 206 (246)
..-++.|.+.-++ -+++=++.. .+.+...+...+..|.+. .++..+|+=+.++.|+...+..+ +.+..--+.
T Consensus 190 ~~A~~a~~~~~Pe~~~ivlVD~~-~d~~~~al~~a~~~g~~l-~gVRlDs~gdl~DK~~~~~~~~~-----~~~~~~G~~ 262 (352)
T PRK07188 190 VEACKAYHKTFPEDELIALVDYN-NDVITDSLKVAREFGDKL-KGVRVDTSKNMIDKYFIRHPEVL-----GTFDPRGVN 262 (352)
T ss_pred HHHHHHHHHHCCCCCeEEEEecC-cccHHHHHHHHHHhCCCc-cEEEeCCcchHhhhhcccccccc-----ccccccccc
Confidence 3445556554333 233323310 123556677777777666 45666776444545433222110 112233356
Q ss_pred HHHHHHHHHHHHHHHhcC-CCCeEEEeCCCChhhhhhccc
Q 025927 207 ESQVKKISDLRRMCLEKG-VNPWIEVDGGVGPKNAYKVPN 245 (246)
Q Consensus 207 ~~~l~KI~~lr~l~~~~~-~~~~I~VDGGI~~e~i~~l~~ 245 (246)
++.+ +++|+.+++.| .++.|.+=||+|+++++.+.+
T Consensus 263 ~~l~---~~vr~~Ld~~g~~~vkI~aSgGine~~I~~~~~ 299 (352)
T PRK07188 263 PELI---KALRKALDENGGKHVKIIVSSGFDAKKIREFEA 299 (352)
T ss_pred HHHH---HHHHHHHhhCCCCCcEEEEeCCCCHHHHHHHHH
Confidence 6655 45567777888 678999999999999988753
No 382
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=72.56 E-value=33 Score=30.14 Aligned_cols=153 Identities=18% Similarity=0.104 Sum_probs=77.2
Q ss_pred HHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEEEccCCccccc
Q 025927 74 EQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIH 153 (246)
Q Consensus 74 ~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It~H~E~~~~~~ 153 (246)
+.++++-++|++++|+---+-..- .+ -...+++++.+ ...++.|++.+- ++...+.|+|-|.+-.+. ..
T Consensus 23 ~~l~~~l~~G~~~vqLR~k~~~~~---~~-~~la~~l~~~~-~~~~~~liInd~---~~lA~~~~adGVHlg~~d---~~ 91 (211)
T PRK03512 23 QWIERLLDAGVRTLQLRIKDRRDE---EV-EADVVAAIALG-RRYQARLFINDY---WRLAIKHQAYGVHLGQED---LE 91 (211)
T ss_pred HHHHHHHhCCCCEEEEcCCCCCHH---HH-HHHHHHHHHHH-HHhCCeEEEeCH---HHHHHHcCCCEEEcChHh---CC
Confidence 458888899999999964332110 01 11122222222 123566777763 445566788866443221 11
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhh-hcceEEEEeecCCCCCCcc-cHHHHHHHHHHHHHHHhcCCCCeEEE
Q 025927 154 LHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSF-IESQVKKISDLRRMCLEKGVNPWIEV 231 (246)
Q Consensus 154 ~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~-~vD~VLvMsV~PGfgGQ~F-~~~~l~KI~~lr~l~~~~~~~~~I~V 231 (246)
+ +-.+.+...+..+|+..+ ..+++..... .+|+|.+=.|-|=-.-+.. -+.-++.++++.+.. .+..+..
T Consensus 92 ~-~~~r~~~~~~~~iG~S~H---~~~e~~~A~~~gaDYi~lgpvf~T~tK~~~~~~~G~~~l~~~~~~~----~~~PV~A 163 (211)
T PRK03512 92 T-ADLNAIRAAGLRLGVSTH---DDMEIDVALAARPSYIALGHVFPTQTKQMPSAPQGLAQLARHVERL----ADYPTVA 163 (211)
T ss_pred H-HHHHHhcCCCCEEEEeCC---CHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc----CCCCEEE
Confidence 1 223333223445666653 3344444433 6899998666432111000 111222233332221 1345777
Q ss_pred eCCCChhhhhhccc
Q 025927 232 DGGVGPKNAYKVPN 245 (246)
Q Consensus 232 DGGI~~e~i~~l~~ 245 (246)
=|||+.+|+.++.+
T Consensus 164 iGGI~~~ni~~l~~ 177 (211)
T PRK03512 164 IGGISLERAPAVLA 177 (211)
T ss_pred ECCCCHHHHHHHHH
Confidence 89999999998754
No 383
>cd03312 CIMS_N_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, N-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the N-terminal barrel, and a few single-barrel sequences most similar to the N-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains fro
Probab=72.43 E-value=11 Score=35.89 Aligned_cols=70 Identities=16% Similarity=0.271 Sum_probs=43.5
Q ss_pred HHHHHHHHHHcCCCEEEeeeccCcccCCCCCCH---------HHHhhcccC-CCCCeeEEEeccCcccchHHHHhcCCCE
Q 025927 72 LGEQVKAVELAGCDWIHVDVMDGRFVPNITIGP---------LVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADI 141 (246)
Q Consensus 72 l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp---------~~I~~ir~~-t~~plDvHLMV~~P~~~i~~~~~agad~ 141 (246)
+.+++++|.++|++||.+| | |.++.++ +.++.+.+. .+..+-+|....+-....+.|.+.++|.
T Consensus 184 y~~el~~L~~aG~~~IQiD--E----P~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~l~tyfg~~~~~~~~l~~l~Vd~ 257 (360)
T cd03312 184 YKELLKKLAAAGAEWVQID--E----PALVLDLPEEWLAAFKRAYEELAKAAPGLKLLLATYFGSLGENLDLLASLPVDG 257 (360)
T ss_pred HHHHHHHHHHCCCCEEEee--C----ChhhcCCCHHHHHHHHHHHHHHhcCCCCCcEEEEecccchHHHHHHHHcCCCCE
Confidence 4578899999999999999 2 3333222 222222221 1345566655555555577888888888
Q ss_pred EEEccC
Q 025927 142 VSVHCE 147 (246)
Q Consensus 142 It~H~E 147 (246)
+.+=+-
T Consensus 258 l~le~~ 263 (360)
T cd03312 258 LHLDLV 263 (360)
T ss_pred EEEEec
Confidence 766543
No 384
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=72.43 E-value=6.1 Score=37.90 Aligned_cols=131 Identities=22% Similarity=0.283 Sum_probs=74.1
Q ss_pred CCCcEEeeeecccChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCccc--chH
Q 025927 55 KSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQ--RVP 132 (246)
Q Consensus 55 ~~~~~IsPSIl~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~--~i~ 132 (246)
+.+..+++++-.-+ +-.+-++.|.++|+|.|-+|+.+||=.-- .+.++.||+. .| ++-+|+-|--. -.+
T Consensus 94 ~~~l~V~aavg~~~--~~~er~~~L~~agvD~ivID~a~g~s~~~----~~~ik~ik~~--~~-~~~viaGNV~T~e~a~ 164 (352)
T PF00478_consen 94 KGRLLVAAAVGTRD--DDFERAEALVEAGVDVIVIDSAHGHSEHV----IDMIKKIKKK--FP-DVPVIAGNVVTYEGAK 164 (352)
T ss_dssp TSCBCEEEEEESST--CHHHHHHHHHHTT-SEEEEE-SSTTSHHH----HHHHHHHHHH--ST-TSEEEEEEE-SHHHHH
T ss_pred cccceEEEEecCCH--HHHHHHHHHHHcCCCEEEccccCccHHHH----HHHHHHHHHh--CC-CceEEecccCCHHHHH
Confidence 44677788777655 22455677788999999999999975322 3567777764 33 55567666442 355
Q ss_pred HHHhcCCCEEEEccCCc-----------ccccH---HHHHHHHHHcCCcEEEEEcCC--CChHHHHHhhhhcceEEEEee
Q 025927 133 DFIKAGADIVSVHCEQS-----------STIHL---HRTLNQIKDLGAKAGVVLNPA--TSLSAIECVLDVVDLVLIMSV 196 (246)
Q Consensus 133 ~~~~agad~It~H~E~~-----------~~~~~---~~~i~~Ik~~G~k~GlAlnP~--Tpve~l~~~l~~vD~VLvMsV 196 (246)
.|.++|||.|-+=+=.- ..+.+ .+.-+..+++++. |.-.-+ ++=+..+-+.-=.|.|++=+.
T Consensus 165 ~L~~aGad~vkVGiGpGsiCtTr~v~GvG~PQ~tAv~~~a~~a~~~~v~--iIADGGi~~sGDi~KAla~GAd~VMlG~l 242 (352)
T PF00478_consen 165 DLIDAGADAVKVGIGPGSICTTREVTGVGVPQLTAVYECAEAARDYGVP--IIADGGIRTSGDIVKALAAGADAVMLGSL 242 (352)
T ss_dssp HHHHTT-SEEEESSSSSTTBHHHHHHSBSCTHHHHHHHHHHHHHCTTSE--EEEESS-SSHHHHHHHHHTT-SEEEESTT
T ss_pred HHHHcCCCEEEEeccCCcccccccccccCCcHHHHHHHHHHHhhhccCc--eeecCCcCcccceeeeeeecccceeechh
Confidence 78999999988865421 01122 2333444445422 222322 333555555555898887433
No 385
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=72.36 E-value=18 Score=33.61 Aligned_cols=79 Identities=15% Similarity=0.268 Sum_probs=69.4
Q ss_pred hhhHHHHHHHHHHcCCCEEEeee--ccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEEEcc
Q 025927 69 FAKLGEQVKAVELAGCDWIHVDV--MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHC 146 (246)
Q Consensus 69 ~~~l~~~i~~l~~~g~d~lHiDI--MDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It~H~ 146 (246)
+.+.++-.+.+++.|+|+|=+-| .=|.|...-.+.++.++.|++.++.|+-.|==.--|+..+.+.++.|+.-|-+.-
T Consensus 154 ~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~i~~~~~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T 233 (284)
T PRK12857 154 MTDPEEARRFVEETGVDALAIAIGTAHGPYKGEPKLDFDRLAKIKELVNIPIVLHGSSGVPDEAIRKAISLGVRKVNIDT 233 (284)
T ss_pred cCCHHHHHHHHHHHCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcCCeEEEeCc
Confidence 66778888888899999999999 7888864445677899999998899999999999999999999999999999987
Q ss_pred C
Q 025927 147 E 147 (246)
Q Consensus 147 E 147 (246)
|
T Consensus 234 ~ 234 (284)
T PRK12857 234 N 234 (284)
T ss_pred H
Confidence 7
No 386
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=72.30 E-value=23 Score=31.64 Aligned_cols=86 Identities=13% Similarity=0.077 Sum_probs=52.8
Q ss_pred CCCCH-HHHhhcccCCCC--CeeEEEeccC-c----ccchHHHHhcCCCEEEEccCCcccccHHHHHHHHHHcCCcEEEE
Q 025927 100 ITIGP-LVVDALRPVTDL--PLDVHLMIVE-P----EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVV 171 (246)
Q Consensus 100 ~tfgp-~~I~~ir~~t~~--plDvHLMV~~-P----~~~i~~~~~agad~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlA 171 (246)
.+|.+ +.++.+|+...- .+.+=+.+.+ + ..+++.....|++.+.++++.. -.++++.+|++|+++.+.
T Consensus 154 ~SF~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~v~~~~~~Gl~v~~w 229 (265)
T cd08564 154 SSFLHYDRLDLLKALRPNKLNVPIALLFNEVKSPSPLDFLEQAKYYNATWVNFSYDFW----TEEFVKKAHENGLKVMTY 229 (265)
T ss_pred EecCchhHHHHHHHhCcCCCCceEEEEecCCCCcccccHHHHHHhcCCceeeechhhh----hHHHHHHHHHcCCEEEEe
Confidence 46777 777777664321 1222223322 2 3566666678888888877642 246789999999999888
Q ss_pred EcCC---CChHHHHHhhhh-cce
Q 025927 172 LNPA---TSLSAIECVLDV-VDL 190 (246)
Q Consensus 172 lnP~---Tpve~l~~~l~~-vD~ 190 (246)
- ++ .+.+.++.+++. +|.
T Consensus 230 T-~~~~~n~~~~~~~l~~~Gvdg 251 (265)
T cd08564 230 F-DEPVNDNEEDYKVYLELGVDC 251 (265)
T ss_pred c-CCCCCCCHHHHHHHHHcCCCE
Confidence 4 22 245666666543 554
No 387
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=72.26 E-value=73 Score=28.89 Aligned_cols=96 Identities=21% Similarity=0.223 Sum_probs=53.7
Q ss_pred cChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCC-C--------HHHHhhcccCCCCCeeEEEeccCcccchHHHHhc
Q 025927 67 ANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITI-G--------PLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKA 137 (246)
Q Consensus 67 aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tf-g--------p~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~a 137 (246)
.|+...-+..+++.+.|+|.|=+=..-. -|+... . .+.|+.|++..+.|+ =+=+.+|+. ++.-.++
T Consensus 21 ~~~~~~~~~a~~~~~~GAdiIDIG~~st--~p~~~~i~~~~E~~rl~~~v~~i~~~~~~pl--SIDT~~~~v-~e~al~~ 95 (257)
T cd00739 21 LSLDKAVAHAEKMIAEGADIIDIGGEST--RPGADPVSVEEELERVIPVLEALRGELDVLI--SVDTFRAEV-ARAALEA 95 (257)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCcC--CCCCCCCCHHHHHHHHHHHHHHHHhcCCCcE--EEeCCCHHH-HHHHHHh
Confidence 5667777788888889999864422211 122111 0 123566665544442 223345544 4455677
Q ss_pred CCCEEE-EccCCcccccHHHHHHHHHHcCCcEEEE
Q 025927 138 GADIVS-VHCEQSSTIHLHRTLNQIKDLGAKAGVV 171 (246)
Q Consensus 138 gad~It-~H~E~~~~~~~~~~i~~Ik~~G~k~GlA 171 (246)
|+++|- +=.+. .+ .+++..+++.|+.+-+.
T Consensus 96 G~~iINdisg~~---~~-~~~~~l~~~~~~~vV~m 126 (257)
T cd00739 96 GADIINDVSGGS---DD-PAMLEVAAEYGAPLVLM 126 (257)
T ss_pred CCCEEEeCCCCC---CC-hHHHHHHHHcCCCEEEE
Confidence 999775 43331 22 46777888888666553
No 388
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=72.16 E-value=79 Score=28.90 Aligned_cols=126 Identities=13% Similarity=0.041 Sum_probs=68.0
Q ss_pred ccChhhHHHHHHHHHHcC-CCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhc--CCCEE
Q 025927 66 SANFAKLGEQVKAVELAG-CDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKA--GADIV 142 (246)
Q Consensus 66 ~aD~~~l~~~i~~l~~~g-~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~a--gad~I 142 (246)
..|...+.+.++.+.+.| ++.+=+= |+--...++..+.-+++ ++..++. |---|
T Consensus 17 ~iD~~~~~~~i~~~i~~G~v~gi~~~---GstGE~~~Lt~eEr~~~--------------------~~~~~~~~~~~~pv 73 (290)
T TIGR00683 17 TINEKGLRQIIRHNIDKMKVDGLYVG---GSTGENFMLSTEEKKEI--------------------FRIAKDEAKDQIAL 73 (290)
T ss_pred CcCHHHHHHHHHHHHhCCCcCEEEEC---CcccccccCCHHHHHHH--------------------HHHHHHHhCCCCcE
Confidence 478889999999999998 7755322 22222345555544333 2222221 11134
Q ss_pred EEccCCcccccHHHHHHHHHHcCCcEEEEEcCC---CChHHHHHhhhh----c-ceEEEEeecCCCCCCcccHHHHHHHH
Q 025927 143 SVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPA---TSLSAIECVLDV----V-DLVLIMSVNPGFGGQSFIESQVKKIS 214 (246)
Q Consensus 143 t~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~---Tpve~l~~~l~~----v-D~VLvMsV~PGfgGQ~F~~~~l~KI~ 214 (246)
.+|+-..++.+..+..+..++.|..+.+.+.|. .+-+.+..|... . +.=+++==.|++.|..+-++++.++.
T Consensus 74 i~gv~~~~t~~~i~la~~a~~~Gad~v~v~~P~y~~~~~~~i~~yf~~v~~~~~~lpv~lYn~P~~tg~~l~~~~i~~L~ 153 (290)
T TIGR00683 74 IAQVGSVNLKEAVELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETGGLNMIVYSIPFLTGVNMGIEQFGELY 153 (290)
T ss_pred EEecCCCCHHHHHHHHHHHHHhCCCEEEEeCCcCCCCCHHHHHHHHHHHHhhCCCCCEEEEeCccccccCcCHHHHHHHh
Confidence 455543234445556666667777777776663 122333333222 2 22223334577778888777777664
No 389
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=72.02 E-value=11 Score=35.10 Aligned_cols=79 Identities=22% Similarity=0.267 Sum_probs=69.0
Q ss_pred hhhHHHHHHHHHHcCCCEEEeee--ccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEEEcc
Q 025927 69 FAKLGEQVKAVELAGCDWIHVDV--MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHC 146 (246)
Q Consensus 69 ~~~l~~~i~~l~~~g~d~lHiDI--MDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It~H~ 146 (246)
+.+.++-.+.+++.|+|+|=+-| .=|.|...-.+..+.+++|++.+++|+-.|==.--|+..+.+.++.|+.-|-+.-
T Consensus 154 ~T~peeA~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~iPLVlHGgSG~~~e~~~kai~~Gi~KiNi~T 233 (284)
T PRK12737 154 YTNPDAAAEFVERTGIDSLAVAIGTAHGLYKGEPKLDFERLAEIREKVSIPLVLHGASGVPDEDVKKAISLGICKVNVAT 233 (284)
T ss_pred CCCHHHHHHHHHHhCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHCCCeEEEeCc
Confidence 66778888888999999999998 7788854345666799999998899999999999999999999999999999987
Q ss_pred C
Q 025927 147 E 147 (246)
Q Consensus 147 E 147 (246)
|
T Consensus 234 ~ 234 (284)
T PRK12737 234 E 234 (284)
T ss_pred H
Confidence 6
No 390
>PTZ00300 pyruvate kinase; Provisional
Probab=72.00 E-value=34 Score=33.90 Aligned_cols=90 Identities=13% Similarity=0.170 Sum_probs=64.5
Q ss_pred cchHHHHhcCCCEEEEccCCcccccHHHHHHHHHHcCCcEEEEEcCCCCh--HHHHHhhhhcceEEE----EeecCCCCC
Q 025927 129 QRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSL--SAIECVLDVVDLVLI----MSVNPGFGG 202 (246)
Q Consensus 129 ~~i~~~~~agad~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpv--e~l~~~l~~vD~VLv----MsV~PGfgG 202 (246)
..+....+.|+|+|.+..=. +.+++.++.+.+.++|..+.+..+-+|+- +.++++++.+|.|+| ++++-|
T Consensus 151 ~dI~~ald~gvd~I~~SfVr-saeDv~~vr~~l~~~~~~~~IiaKIEt~eav~nldeI~~~~DgImVaRGDLgvei~--- 226 (454)
T PTZ00300 151 ADLQFGVEQGVDMIFASFIR-SAEQVGEVRKALGAKGGDIMIICKIENHQGVQNIDSIIEESDGIMVARGDLGVEIP--- 226 (454)
T ss_pred HHHHHHHHCCCCEEEECCCC-CHHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHhCCEEEEecchhhhhcC---
Confidence 45666688999999987532 24677788888888888888998888765 899999999999998 666655
Q ss_pred CcccHHHHHHHHHHHHHHHhcCC
Q 025927 203 QSFIESQVKKISDLRRMCLEKGV 225 (246)
Q Consensus 203 Q~F~~~~l~KI~~lr~l~~~~~~ 225 (246)
.+++..-.+++-+.+.+.|.
T Consensus 227 ---~e~vp~~Qk~Ii~~~~~~gk 246 (454)
T PTZ00300 227 ---AEKVVVAQKILISKCNVAGK 246 (454)
T ss_pred ---hHHHHHHHHHHHHHHHHcCC
Confidence 34444444444444555554
No 391
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=71.96 E-value=10 Score=38.06 Aligned_cols=105 Identities=17% Similarity=0.209 Sum_probs=70.1
Q ss_pred cChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCC--CCCeeEEEeccCcccchH--HHHhcCCCEE
Q 025927 67 ANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVT--DLPLDVHLMIVEPEQRVP--DFIKAGADIV 142 (246)
Q Consensus 67 aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t--~~plDvHLMV~~P~~~i~--~~~~agad~I 142 (246)
.++..+.+..++++++|+|.|-+==|=|.-.|.-.. +.+++||+.. ++|+.+|.=-..=..... .-+++|||+|
T Consensus 152 ~t~e~~~~~a~~l~~~Gad~I~IkDtaGll~P~~~~--~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laAieAGad~v 229 (499)
T PRK12330 152 HTVEGFVEQAKRLLDMGADSICIKDMAALLKPQPAY--DIVKGIKEACGEDTRINLHCHSTTGVTLVSLMKAIEAGVDVV 229 (499)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCccCCCHHHHH--HHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHHHHcCCCEE
Confidence 467778888899999999998876666776665332 4677788765 688999885443332222 3367899987
Q ss_pred EEccCCc----ccccHHHHHHHHHHcCCcEEEEEc
Q 025927 143 SVHCEQS----STIHLHRTLNQIKDLGAKAGVVLN 173 (246)
Q Consensus 143 t~H~E~~----~~~~~~~~i~~Ik~~G~k~GlAln 173 (246)
-.=+-.. +....+.++..++..|...|+=+.
T Consensus 230 Dtai~Glg~~aGn~atE~vv~~L~~~g~~tgiDl~ 264 (499)
T PRK12330 230 DTAISSMSLGPGHNPTESLVEMLEGTGYTTKLDMD 264 (499)
T ss_pred EeecccccccccchhHHHHHHHHHhcCCCCCCCHH
Confidence 6544322 233466778888877777665443
No 392
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=71.95 E-value=8.1 Score=37.77 Aligned_cols=118 Identities=17% Similarity=0.241 Sum_probs=80.8
Q ss_pred cceeccccCCCCCCceeccccceeeeeeccccccCCCCCcEEeeeecccChhhHHHHHHHHHHcCCCEEEeeeccCcccC
Q 025927 19 GFMLQKTNLNQPSSLSFTRRRIQTIVKASARVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVP 98 (246)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IsPSIl~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVp 98 (246)
++.-.+-.+..|+-..+ +.|++.+..|-.|..+-......-+|-|- ++...+.+..+.+.+.|++.+.+|++
T Consensus 175 D~IKDDE~l~~q~~~p~-~eRv~~~~~a~~~a~~eTG~~~~ya~NiT-~~~~em~~ra~~~~~~G~~~~mv~~~------ 246 (412)
T TIGR03326 175 DLLKDDENLTSQPFNRF-EERVEKLYKVRDKVEAETGERKEYLANIT-APVREMERRAELVADLGGQYVMVDVV------ 246 (412)
T ss_pred ceeecCCCCCCCCCccH-HHHHHHHHHHHHHHHHHhCCcceEEEEec-CCHHHHHHHHHHHHHhCCCeEEEEee------
Confidence 56666666655554433 45566666666555554444555666665 77999999999999999999999875
Q ss_pred CCCCCHHHHhhccc---CCCCCeeEE-----EeccCccc------chHHHHhcCCCEEEEcc
Q 025927 99 NITIGPLVVDALRP---VTDLPLDVH-----LMIVEPEQ------RVPDFIKAGADIVSVHC 146 (246)
Q Consensus 99 N~tfgp~~I~~ir~---~t~~plDvH-----LMV~~P~~------~i~~~~~agad~It~H~ 146 (246)
+.|...++.|++ ..++|+..| -|+.+|.. |-+.+.-+|+|.+.+.-
T Consensus 247 --~~G~~~l~~l~~~~~~~~l~ih~Hra~~ga~~~~~~~Gis~~vl~kl~RLaGaD~~~~~t 306 (412)
T TIGR03326 247 --VCGWSALQYIRELTEDLGLAIHAHRAMHAAFTRNPKHGISMFALAKLYRLIGVDQLHTGT 306 (412)
T ss_pred --ccchHHHHHHHHhhccCCeEEEEcCCcccccccCCCCcCcHHHHHHHHHHcCCCeeeeCC
Confidence 456667888876 457888888 45566652 23333558999998873
No 393
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=71.78 E-value=7.1 Score=35.11 Aligned_cols=20 Identities=30% Similarity=0.371 Sum_probs=17.4
Q ss_pred HHHHHHHHHcCCCEEEeeec
Q 025927 73 GEQVKAVELAGCDWIHVDVM 92 (246)
Q Consensus 73 ~~~i~~l~~~g~d~lHiDIM 92 (246)
.+.++.|.++|++++++.+-
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E 142 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLD 142 (296)
T ss_pred HHHHHHHHHcCCCEEEEccc
Confidence 68889999999999999865
No 394
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=71.75 E-value=11 Score=34.23 Aligned_cols=74 Identities=30% Similarity=0.514 Sum_probs=60.1
Q ss_pred CcEEeeeecccChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHh
Q 025927 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIK 136 (246)
Q Consensus 57 ~~~IsPSIl~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~ 136 (246)
-+++--.+.+.|..+..+-++..+..|++++ || .-.|+.++..|..+++|+=| =.-+|+.+. ..++
T Consensus 14 alKVIsGLnNFd~~~V~~i~~AA~~ggAt~v--DI---------Aadp~LV~~~~~~s~lPICV--SaVep~~f~-~aV~ 79 (242)
T PF04481_consen 14 ALKVISGLNNFDAESVAAIVKAAEIGGATFV--DI---------AADPELVKLAKSLSNLPICV--SAVEPELFV-AAVK 79 (242)
T ss_pred chhheeCccccCHHHHHHHHHHHHccCCceE--Ee---------cCCHHHHHHHHHhCCCCeEe--ecCCHHHHH-HHHH
Confidence 4667778999999999999999999999854 44 45689999999999999655 344888877 5588
Q ss_pred cCCCEEEE
Q 025927 137 AGADIVSV 144 (246)
Q Consensus 137 agad~It~ 144 (246)
+|||+|-+
T Consensus 80 AGAdliEI 87 (242)
T PF04481_consen 80 AGADLIEI 87 (242)
T ss_pred hCCCEEEe
Confidence 99999865
No 395
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=71.64 E-value=17 Score=29.85 Aligned_cols=103 Identities=19% Similarity=0.201 Sum_probs=55.1
Q ss_pred HHHHhcCCCEEEEccCCccc-----ccHHHHHHHHHHcCCcE-E--EEEcCCCC--------------hHHHHHhhhh--
Q 025927 132 PDFIKAGADIVSVHCEQSST-----IHLHRTLNQIKDLGAKA-G--VVLNPATS--------------LSAIECVLDV-- 187 (246)
Q Consensus 132 ~~~~~agad~It~H~E~~~~-----~~~~~~i~~Ik~~G~k~-G--lAlnP~Tp--------------ve~l~~~l~~-- 187 (246)
+...++|.+.|-+....... ..+..+.+.+++.|+++ + ...+...+ ++.++..++.
T Consensus 2 ~~~~~~G~~~vE~~~~~~~~~~~~~~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~ 81 (213)
T PF01261_consen 2 EAAAEAGFDGVELRFDDGQPWDEKDDEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAIDLAK 81 (213)
T ss_dssp HHHHHTTHSEEEEEHHHHSHHTHHHHHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHHHHH
T ss_pred hHHHHcCCCEEEEecCCCcccccchHHHHHHHHHHHHcCCeEEEEecccccccccccccCcchhhHHHHHHHHHHHHHHH
Confidence 45667788877777653211 13557777788888883 2 22232222 4455555443
Q ss_pred ---cceEEEEeecCC---CCCCcc----cHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCh
Q 025927 188 ---VDLVLIMSVNPG---FGGQSF----IESQVKKISDLRRMCLEKGVNPWIEVDGGVGP 237 (246)
Q Consensus 188 ---vD~VLvMsV~PG---fgGQ~F----~~~~l~KI~~lr~l~~~~~~~~~I~VDGGI~~ 237 (246)
++. |.+.|| ..++.. .....+.++++-++..+.|..+.+|--++...
T Consensus 82 ~lg~~~---i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~ 138 (213)
T PF01261_consen 82 RLGAKY---IVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALENHPGPFS 138 (213)
T ss_dssp HHTBSE---EEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SSSSSS
T ss_pred HhCCCc---eeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEecccCccc
Confidence 334 333344 333443 33444555666666666776666666555543
No 396
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=71.62 E-value=50 Score=31.76 Aligned_cols=87 Identities=15% Similarity=0.233 Sum_probs=54.2
Q ss_pred ccHHHHHHHHHHcC--CcEEEEEcCCCChHHHHHhhhh--cceEEEEeecCCCCCCc--c----cHHHHHHHHHHHHHHH
Q 025927 152 IHLHRTLNQIKDLG--AKAGVVLNPATSLSAIECVLDV--VDLVLIMSVNPGFGGQS--F----IESQVKKISDLRRMCL 221 (246)
Q Consensus 152 ~~~~~~i~~Ik~~G--~k~GlAlnP~Tpve~l~~~l~~--vD~VLvMsV~PGfgGQ~--F----~~~~l~KI~~lr~l~~ 221 (246)
+++...++++|+.+ ..+++=+.+....+++...++. +|.|.|=.-+.|-+..+ | -..+..=+.++++...
T Consensus 199 ~~l~~~I~~lr~~~~~~pV~vK~~~~~~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v~~~~~ 278 (392)
T cd02808 199 EDLAQLIEDLREATGGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQALV 278 (392)
T ss_pred HHHHHHHHHHHHhCCCceEEEEECCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHHHHHHH
Confidence 35678899999875 5778877777566677766643 79998766554322111 1 1123344455555555
Q ss_pred hcCC--CCeEEEeCCCChh
Q 025927 222 EKGV--NPWIEVDGGVGPK 238 (246)
Q Consensus 222 ~~~~--~~~I~VDGGI~~e 238 (246)
+.++ +..|.+||||...
T Consensus 279 ~~~~~~~i~viasGGI~~g 297 (392)
T cd02808 279 KNGLRDRVSLIASGGLRTG 297 (392)
T ss_pred HcCCCCCCeEEEECCCCCH
Confidence 4432 4779999999753
No 397
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=71.49 E-value=24 Score=28.89 Aligned_cols=84 Identities=19% Similarity=0.164 Sum_probs=52.4
Q ss_pred CCCHHHHhhcccC-CCCCeeEEEeccCcccchH--HHHhcCCCEEEEccCCcccccHHHHHHHHHHcCCcEEEEEcCCCC
Q 025927 101 TIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVP--DFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS 177 (246)
Q Consensus 101 tfgp~~I~~ir~~-t~~plDvHLMV~~P~~~i~--~~~~agad~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tp 177 (246)
+|.++.++++|+. +++++ .-+.-........ .+...|++.+.+++... . .+.++.+|++|+++.+.- -..
T Consensus 98 s~~~~~l~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~-~~~i~~~~~~g~~v~~wt--vn~ 170 (189)
T cd08556 98 SFDHEALRALKELDPEVPT-GLLVDKPPLDPLLAELARALGADAVNPHYKLL---T-PELVRAAHAAGLKVYVWT--VND 170 (189)
T ss_pred eCCHHHHHHHHHhCCCCcE-EEEeecCcccchhhhHHHhcCCeEEccChhhC---C-HHHHHHHHHcCCEEEEEc--CCC
Confidence 6788899999886 34332 2222222333332 45677899998887632 2 468999999999986653 234
Q ss_pred hHHHHHhhhh-cceE
Q 025927 178 LSAIECVLDV-VDLV 191 (246)
Q Consensus 178 ve~l~~~l~~-vD~V 191 (246)
.+.++.++.. +|.|
T Consensus 171 ~~~~~~~~~~GVdgI 185 (189)
T cd08556 171 PEDARRLLALGVDGI 185 (189)
T ss_pred HHHHHHHHHCCCCEE
Confidence 6666666542 6554
No 398
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=71.34 E-value=40 Score=31.72 Aligned_cols=86 Identities=12% Similarity=0.091 Sum_probs=49.1
Q ss_pred CCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEEEccCCcccccHHHHHHHHHHcCCcEEEEEcCCCCh-
Q 025927 100 ITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSL- 178 (246)
Q Consensus 100 ~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpv- 178 (246)
..=+|+.|+++++.+++|+-.-.=..+ ..-.+.+.++|+|+|- |+.-......++..+|.. .++=+ ..-...+
T Consensus 59 Rm~~p~~I~aIk~~V~iPVigk~Righ-~~Ea~~L~~~GvDiID---~Te~lrpad~~~~~~K~~-f~~~f-mad~~~l~ 132 (293)
T PRK04180 59 RMADPKMIEEIMDAVSIPVMAKARIGH-FVEAQILEALGVDYID---ESEVLTPADEEYHIDKWD-FTVPF-VCGARNLG 132 (293)
T ss_pred ecCCHHHHHHHHHhCCCCeEEeehhhH-HHHHHHHHHcCCCEEe---ccCCCCchHHHHHHHHHH-cCCCE-EccCCCHH
Confidence 455899999999988898766433322 3335567889999993 532112244566666643 23322 2333344
Q ss_pred HHHHHhhhhcceE
Q 025927 179 SAIECVLDVVDLV 191 (246)
Q Consensus 179 e~l~~~l~~vD~V 191 (246)
|.+.-.-.-+|+|
T Consensus 133 EAlrai~~GadmI 145 (293)
T PRK04180 133 EALRRIAEGAAMI 145 (293)
T ss_pred HHHHHHHCCCCee
Confidence 4444433336654
No 399
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=71.33 E-value=82 Score=28.74 Aligned_cols=36 Identities=17% Similarity=0.177 Sum_probs=27.8
Q ss_pred EEEEccCCcccccHHHHHHHHHHcCCcEEEEEcCCCCh
Q 025927 141 IVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSL 178 (246)
Q Consensus 141 ~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpv 178 (246)
..++..+. -.++..+++.+|++|+++++.++|....
T Consensus 57 ~f~~d~~~--FPd~~~~i~~l~~~G~~~~~~~~P~i~~ 92 (308)
T cd06593 57 DFEFDPDR--FPDPEGMLSRLKEKGFKVCLWINPYIAQ 92 (308)
T ss_pred eeEECccc--CCCHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 34454443 4678999999999999999999987554
No 400
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=71.24 E-value=34 Score=31.96 Aligned_cols=111 Identities=15% Similarity=0.171 Sum_probs=57.0
Q ss_pred cChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCC------C--CHHHHhhccc------CCCCCe----eEEE--eccC
Q 025927 67 ANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNIT------I--GPLVVDALRP------VTDLPL----DVHL--MIVE 126 (246)
Q Consensus 67 aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~t------f--gp~~I~~ir~------~t~~pl----DvHL--MV~~ 126 (246)
.+..+..+.+++++++|+--+|+. |..|-+.-+ + -.++++.||. ..++.+ |+-. -.++
T Consensus 89 G~~~~v~r~V~~~~~aGaagi~IE--Dq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa~~~~g~de 166 (294)
T TIGR02319 89 GNAMSVWRATREFERVGIVGYHLE--DQVNPKRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTIIARTDARESFGLDE 166 (294)
T ss_pred CCcHHHHHHHHHHHHcCCeEEEEE--CCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEecccccCCHHH
Confidence 355578899999999999999983 544411111 0 1233444422 112211 2200 0111
Q ss_pred cccchHHHHhcCCCEEEEccCCcccccHHHHHHHHHHcCCcE--EEEEcCCCChHHHHH
Q 025927 127 PEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKA--GVVLNPATSLSAIEC 183 (246)
Q Consensus 127 P~~~i~~~~~agad~It~H~E~~~~~~~~~~i~~Ik~~G~k~--GlAlnP~Tpve~l~~ 183 (246)
-.+-...|.++|||.|.+|--. +.+++.++.+. ..... -+...+.||.-.+++
T Consensus 167 aI~Ra~aY~eAGAD~ifi~~~~-~~~ei~~~~~~---~~~P~~~nv~~~~~~p~~s~~e 221 (294)
T TIGR02319 167 AIRRSREYVAAGADCIFLEAML-DVEEMKRVRDE---IDAPLLANMVEGGKTPWLTTKE 221 (294)
T ss_pred HHHHHHHHHHhCCCEEEecCCC-CHHHHHHHHHh---cCCCeeEEEEecCCCCCCCHHH
Confidence 2233457788999999998532 12333344433 33343 455556666433434
No 401
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=71.23 E-value=33 Score=30.78 Aligned_cols=116 Identities=14% Similarity=0.143 Sum_probs=72.4
Q ss_pred CCHHHHhhcccCCCCCeeEEEeccCcccchHHH----HhcCCCEEEEccCCcccccHHHHHHHHHHcCCcEEEEEcCCCC
Q 025927 102 IGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDF----IKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS 177 (246)
Q Consensus 102 fgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~----~~agad~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tp 177 (246)
.+.+.++...+.-++|+...-.....+.+++.+ .++|++.+.+=.=. ...+-.+.=+.+.+.|+++-.=|.-..+
T Consensus 45 ~~~~~~~~qA~algipl~~~~~~~~~e~~~e~l~~~l~~~gv~~vv~GdI~-s~~qr~~~e~v~~~lgl~~~~PLW~~~~ 123 (223)
T TIGR00290 45 VNAHLTDLQAESIGIPLIKLYTEGTEEDEVEELKGILHTLDVEAVVFGAIY-SEYQKTRIERVCRELGLKSFAPLWHRDP 123 (223)
T ss_pred cCHHHHHHHHHHcCCCeEEeecCCCccHHHHHHHHHHHHcCCCEEEECCcc-cHHHHHHHHHHHHhcCCEEeccccCCCH
Confidence 355666665555566653211112234555555 44588887764321 1233445556667888888887887777
Q ss_pred hHHHHHhhhh-cceEEE----EeecCCCCCCcccHHHHHHHHHHHH
Q 025927 178 LSAIECVLDV-VDLVLI----MSVNPGFGGQSFIESQVKKISDLRR 218 (246)
Q Consensus 178 ve~l~~~l~~-vD~VLv----MsV~PGfgGQ~F~~~~l~KI~~lr~ 218 (246)
-+.+.++++. ++.+++ +..+|.|=|..+..+.++++.++.+
T Consensus 124 ~~ll~e~i~~G~~aiIv~v~a~gL~~~~LGr~i~~e~i~~L~~~~~ 169 (223)
T TIGR00290 124 EKLMEEFVEEKFEARIIAVAAEGLDESWLGRRIDRKMIDELKKLNE 169 (223)
T ss_pred HHHHHHHHHcCCeEEEEEEecCCCChHHcCCcccHHHHHHHHHHHh
Confidence 7888888865 666553 2235567899999999888776543
No 402
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=71.05 E-value=15 Score=32.93 Aligned_cols=20 Identities=25% Similarity=0.187 Sum_probs=10.0
Q ss_pred ChhhHHHHHHHHHHcCCCEE
Q 025927 68 NFAKLGEQVKAVELAGCDWI 87 (246)
Q Consensus 68 D~~~l~~~i~~l~~~g~d~l 87 (246)
++..+.+.++++.++|++++
T Consensus 137 ~~~~~~~~~~~~~~~G~~~i 156 (259)
T cd07939 137 DPDFLIEFAEVAQEAGADRL 156 (259)
T ss_pred CHHHHHHHHHHHHHCCCCEE
Confidence 34445555555555555543
No 403
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=70.96 E-value=11 Score=35.37 Aligned_cols=75 Identities=21% Similarity=0.176 Sum_probs=49.6
Q ss_pred ChhhHHHHHHHHHHcCCCEEEeeeccCcccCCC-CCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEEEc
Q 025927 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNI-TIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVH 145 (246)
Q Consensus 68 D~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~-tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It~H 145 (246)
+.....+-++.|++.|+|++|+- -|.+.+.. .+..+..+.+|+.+++|+-+==.+. |+..-+.+.+-++|.|.+=
T Consensus 239 ~~ee~~~~~~~l~~~g~d~i~vs--~g~~~~~~~~~~~~~~~~ik~~~~ipvi~~G~i~-~~~a~~~l~~g~~D~V~~g 314 (338)
T cd02933 239 PEATFSYLAKELNKRGLAYLHLV--EPRVAGNPEDQPPDFLDFLRKAFKGPLIAAGGYD-AESAEAALADGKADLVAFG 314 (338)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEe--cCCCCCcccccchHHHHHHHHHcCCCEEEECCCC-HHHHHHHHHcCCCCEEEeC
Confidence 33445566788999999999973 34454432 5667788889998888865544443 6554433344459999884
No 404
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=70.86 E-value=79 Score=30.35 Aligned_cols=130 Identities=16% Similarity=0.119 Sum_probs=0.0
Q ss_pred HHHhhcccCC-CCCeeEEEecc-CcccchH---HHHhcCCCEEEEccCC--------------cccccHHHHHHHHHHc-
Q 025927 105 LVVDALRPVT-DLPLDVHLMIV-EPEQRVP---DFIKAGADIVSVHCEQ--------------SSTIHLHRTLNQIKDL- 164 (246)
Q Consensus 105 ~~I~~ir~~t-~~plDvHLMV~-~P~~~i~---~~~~agad~It~H~E~--------------~~~~~~~~~i~~Ik~~- 164 (246)
+.++.+++.. +.|+-+-++-. +|+.|.+ .+.++|+|.|.+-+=. ...+.+.++++.+|+.
T Consensus 88 ~~~~~~~~~~~~~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~ 167 (420)
T PRK08318 88 REIRRVKRDYPDRALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGS 167 (420)
T ss_pred HHHHHHHhhCCCceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhcc
Q ss_pred CCcEEEEEcCC-CChHHHHHhhhh--cceEEE-------EeecC----------------CCCCCcccHHHHHHHHHHHH
Q 025927 165 GAKAGVVLNPA-TSLSAIECVLDV--VDLVLI-------MSVNP----------------GFGGQSFIESQVKKISDLRR 218 (246)
Q Consensus 165 G~k~GlAlnP~-Tpve~l~~~l~~--vD~VLv-------MsV~P----------------GfgGQ~F~~~~l~KI~~lr~ 218 (246)
.+-+.+=|.|+ +.+..+...+.. +|.|.+ |.+++ |++|.+..|-.++.|+++++
T Consensus 168 ~~Pv~vKl~p~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~ 247 (420)
T PRK08318 168 RLPVIVKLTPNITDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIAR 247 (420)
T ss_pred CCcEEEEcCCCcccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHh
Q ss_pred HHHhcCCCCeEEEeCCCC
Q 025927 219 MCLEKGVNPWIEVDGGVG 236 (246)
Q Consensus 219 l~~~~~~~~~I~VDGGI~ 236 (246)
.... .++.|--=|||.
T Consensus 248 ~~~~--~~ipIig~GGI~ 263 (420)
T PRK08318 248 DPET--RGLPISGIGGIE 263 (420)
T ss_pred cccc--CCCCEEeecCcC
No 405
>PRK14905 triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional
Probab=70.81 E-value=61 Score=31.09 Aligned_cols=114 Identities=16% Similarity=0.146 Sum_probs=68.0
Q ss_pred hHHHHhcCCCEEEE-ccCCc-----ccccHHHHHHHHHHcCCcEEEEEcCCCC-------hH----HHHHhhhhcce---
Q 025927 131 VPDFIKAGADIVSV-HCEQS-----STIHLHRTLNQIKDLGAKAGVVLNPATS-------LS----AIECVLDVVDL--- 190 (246)
Q Consensus 131 i~~~~~agad~It~-H~E~~-----~~~~~~~~i~~Ik~~G~k~GlAlnP~Tp-------ve----~l~~~l~~vD~--- 190 (246)
.+.+.++|++++.+ |.|-= +.+.+.+-++...++|+.+=+.+.-... .+ .++..++.++.
T Consensus 88 ~~mL~d~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIvCiGE~~eer~~g~~~~v~~~Ql~~~l~~v~~~~~ 167 (355)
T PRK14905 88 PLMLKELGIELVMIGHSERRHVLKETDQEENEKVLAALKHGFITLLCIGETLEQKNYNISDEVLRTQLKIGLHGVSAEQL 167 (355)
T ss_pred HHHHHHcCCCEEEECcccccCcccccHHHHHHHHHHHHHCCCEEEEEcCCcHHHHhccCHHHHHHHHHHHHHccCCHhhc
Confidence 45778899987664 55420 1223445566677899998877763211 11 23333333221
Q ss_pred -EEEEeecC----CCCCCcccH----HHHHHHHHH-HHHHHhcCCCCeEEEeCCCChhhhhhcc
Q 025927 191 -VLIMSVNP----GFGGQSFIE----SQVKKISDL-RRMCLEKGVNPWIEVDGGVGPKNAYKVP 244 (246)
Q Consensus 191 -VLvMsV~P----GfgGQ~F~~----~~l~KI~~l-r~l~~~~~~~~~I~VDGGI~~e~i~~l~ 244 (246)
=+++.-|| |-||++-.+ ++.+.||+. .+...+..-+..|.-=|||+.+|+.++.
T Consensus 168 ~~~vIAYEPvWAIGTgg~~as~~~~~~~~~~Ir~~l~~~~~~~~~~v~ILYGGSV~~~N~~~l~ 231 (355)
T PRK14905 168 PHLFIAYEPVWAIGEGGIPASAEYADEKHAIIKQCLFELFAEESKKIPVLYGGSVNLENANELI 231 (355)
T ss_pred CceEEEECChHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhccccCceeEEEeCcCCHHHHHHHh
Confidence 16788899 556776655 555555543 3333222334678899999999998864
No 406
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=70.79 E-value=80 Score=28.34 Aligned_cols=104 Identities=20% Similarity=0.204 Sum_probs=62.4
Q ss_pred ccChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCC-CC--------HHHHhhcccCCCCCeeEEEeccCcccchHHHHh
Q 025927 66 SANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNIT-IG--------PLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIK 136 (246)
Q Consensus 66 ~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~t-fg--------p~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~ 136 (246)
..|+....+..+++.+.|+|.|=+-..- .-|+.. .+ .+.|+.+++.++.|+ =+-+.+|+. ++.-.+
T Consensus 20 ~~~~~~~~~~a~~~~~~GAdiIDvG~~s--t~p~~~~~~~~~E~~rl~~~v~~l~~~~~~pi--SIDT~~~~v-~~aaL~ 94 (258)
T cd00423 20 FLSLDKALEHARRMVEEGADIIDIGGES--TRPGAEPVSVEEELERVIPVLRALAGEPDVPI--SVDTFNAEV-AEAALK 94 (258)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEECCCc--CCCCCCcCCHHHHHHHHHHHHHHHHhcCCCeE--EEeCCcHHH-HHHHHH
Confidence 4677888888889999999997655433 224421 11 134555665555553 456667765 445567
Q ss_pred cCCCEEEEccCCcccccHHHHHHHHHHcCCcEEEEEcCCCC
Q 025927 137 AGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS 177 (246)
Q Consensus 137 agad~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tp 177 (246)
+|+++|-= .-.. ..+ .+++..+++.|+.+-+.-..+++
T Consensus 95 ~g~~iINd-is~~-~~~-~~~~~l~~~~~~~vV~m~~~~~~ 132 (258)
T cd00423 95 AGADIIND-VSGG-RGD-PEMAPLAAEYGAPVVLMHMDGTP 132 (258)
T ss_pred hCCCEEEe-CCCC-CCC-hHHHHHHHHcCCCEEEECcCCCC
Confidence 78886642 1111 112 46778889999877666554443
No 407
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=70.72 E-value=12 Score=33.31 Aligned_cols=65 Identities=14% Similarity=0.098 Sum_probs=42.5
Q ss_pred HHHhcCCCEEEEccCCccc--ccHHHHHHHHHH----cCCcEEEEEcCCCChHHHHHhhhhcceEEEEeec
Q 025927 133 DFIKAGADIVSVHCEQSST--IHLHRTLNQIKD----LGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVN 197 (246)
Q Consensus 133 ~~~~agad~It~H~E~~~~--~~~~~~i~~Ik~----~G~k~GlAlnP~Tpve~l~~~l~~vD~VLvMsV~ 197 (246)
.+.+.|-|-|-+.+|.... .+...+++.+|+ .|....+++.+.+.-....+..+.+|+|.||+=+
T Consensus 94 ~~~~~~~DGIdiDwE~~~~~~~~~~~fv~~Lr~~l~~~~~~lt~av~~~~~~~~~~~~~~~vD~i~vMtYD 164 (253)
T cd06545 94 YVVSYNLDGIDVDLEGPDVTFGDYLVFIRALYAALKKEGKLLTAAVSSWNGGAVSDSTLAYFDFINIMSYD 164 (253)
T ss_pred HHHHhCCCceeEEeeccCccHhHHHHHHHHHHHHHhhcCcEEEEEccCcccccccHHHHhhCCEEEEEcCc
Confidence 3346788999998885321 234456666554 4666677776654332334567789999999998
No 408
>PF06073 DUF934: Bacterial protein of unknown function (DUF934); InterPro: IPR008318 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=70.47 E-value=14 Score=29.81 Aligned_cols=65 Identities=26% Similarity=0.328 Sum_probs=48.2
Q ss_pred EEEEcCCCChHHHHHhhhhcceEEEEeecCCCC-CCcccHHHHHHHHHHHHHHHhcCCCCeEEEeCCCChhhhhhc
Q 025927 169 GVVLNPATSLSAIECVLDVVDLVLIMSVNPGFG-GQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKV 243 (246)
Q Consensus 169 GlAlnP~Tpve~l~~~l~~vD~VLvMsV~PGfg-GQ~F~~~~l~KI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~l 243 (246)
||.|.|++.++.+.+.|+.+++|-|- =|.|. |..| ..+|.+++..|+.-+|-.=|.+-.+.+..+
T Consensus 1 gv~l~~d~~~~~l~~~L~~l~lI~i~--FP~F~DGRgf--------S~ArlLR~r~gy~GelRA~Gdvl~DQl~~l 66 (110)
T PF06073_consen 1 GVWLAPDDDPEELADDLDRLPLIAID--FPKFTDGRGF--------SQARLLRERYGYTGELRAVGDVLRDQLFYL 66 (110)
T ss_pred CeecCCCCCHHHHHhhccCCCEEEEE--CCCcCCchHh--------HHHHHHHHHcCCCCcEEEeccchHHHHHHH
Confidence 78999999999999988888766542 37774 6666 556667767788888888887766655443
No 409
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=70.37 E-value=96 Score=29.09 Aligned_cols=150 Identities=11% Similarity=0.142 Sum_probs=0.0
Q ss_pred cChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcc----cchHHHHhcCCCEE
Q 025927 67 ANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPE----QRVPDFIKAGADIV 142 (246)
Q Consensus 67 aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~----~~i~~~~~agad~I 142 (246)
.+...+.+.++.+.+.|+ ..|.+.-|.= .+-+++.+-++.....-+.++ |++|.. +.++.+.+.|.+.|
T Consensus 46 ~~~e~~~~ii~~~~~~g~--~~v~~~GGEP----ll~~~~~~il~~~~~~g~~~~-i~TNG~ll~~~~~~~L~~~g~~~v 118 (378)
T PRK05301 46 LSTEEWIRVLREARALGA--LQLHFSGGEP----LLRKDLEELVAHARELGLYTN-LITSGVGLTEARLAALKDAGLDHI 118 (378)
T ss_pred CCHHHHHHHHHHHHHcCC--cEEEEECCcc----CCchhHHHHHHHHHHcCCcEE-EECCCccCCHHHHHHHHHcCCCEE
Q ss_pred EEccCCc-------------ccccHHHHHHHHHHcCCcEEEEEcCC-CChHHHHHhhhh-----cceEEEEeecC-CCCC
Q 025927 143 SVHCEQS-------------STIHLHRTLNQIKDLGAKAGVVLNPA-TSLSAIECVLDV-----VDLVLIMSVNP-GFGG 202 (246)
Q Consensus 143 t~H~E~~-------------~~~~~~~~i~~Ik~~G~k~GlAlnP~-Tpve~l~~~l~~-----vD~VLvMsV~P-GfgG 202 (246)
.+.++.. +.+...+.++.+++.|+++++..-.. ..++.+.++++. ++.+-++.+.| |++.
T Consensus 119 ~iSldg~~~e~~d~irg~~g~f~~~~~~i~~l~~~g~~v~i~~vv~~~N~~~i~~~~~~~~~lgv~~i~~~~~~~~g~~~ 198 (378)
T PRK05301 119 QLSFQDSDPELNDRLAGTKGAFAKKLAVARLVKAHGYPLTLNAVIHRHNIDQIPRIIELAVELGADRLELANTQYYGWAL 198 (378)
T ss_pred EEEecCCCHHHHHHHcCCCchHHHHHHHHHHHHHCCCceEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecccccChhh
Q ss_pred -----CcccHHHHHHHHHHHHHHHhc
Q 025927 203 -----QSFIESQVKKISDLRRMCLEK 223 (246)
Q Consensus 203 -----Q~F~~~~l~KI~~lr~l~~~~ 223 (246)
....++.++++.++-+...++
T Consensus 199 ~~~~~~~~~~e~~~~~~~~~~~~~~~ 224 (378)
T PRK05301 199 LNRAALMPTREQLERAERIVEEARER 224 (378)
T ss_pred hcccccCCCHHHHHHHHHHHHHHHHH
No 410
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=70.33 E-value=11 Score=34.77 Aligned_cols=79 Identities=18% Similarity=0.246 Sum_probs=69.2
Q ss_pred hhhHHHHHHHHHHcCCCEEEeee--ccCcccC-CCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEEEc
Q 025927 69 FAKLGEQVKAVELAGCDWIHVDV--MDGRFVP-NITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVH 145 (246)
Q Consensus 69 ~~~l~~~i~~l~~~g~d~lHiDI--MDG~FVp-N~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It~H 145 (246)
+.+.++-.+.+++.|+|+|=+=| .=|.|.. .-.+.++.+++|++.++.|+-.|==.-.|+..+.++++.|+.-|-+.
T Consensus 147 ~T~pe~a~~Fv~~TgvD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~ 226 (276)
T cd00947 147 LTDPEEAEEFVEETGVDALAVAIGTSHGAYKGGEPKLDFDRLKEIAERVNVPLVLHGGSGIPDEQIRKAIKLGVCKININ 226 (276)
T ss_pred CCCHHHHHHHHHHHCCCEEEeccCccccccCCCCCccCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcCCeEEEeC
Confidence 56677777788888999999888 8899966 55677789999999889999999999999999999999999999998
Q ss_pred cC
Q 025927 146 CE 147 (246)
Q Consensus 146 ~E 147 (246)
-|
T Consensus 227 T~ 228 (276)
T cd00947 227 TD 228 (276)
T ss_pred hH
Confidence 77
No 411
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=70.28 E-value=31 Score=30.38 Aligned_cols=138 Identities=14% Similarity=0.095 Sum_probs=71.8
Q ss_pred eeeecccChhhHHHHHHHHHHcCCCEEEeeeccCc-ccCCCC-CCHHHHhhcccCCCCCeeEEEe----------ccCcc
Q 025927 61 SPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGR-FVPNIT-IGPLVVDALRPVTDLPLDVHLM----------IVEPE 128 (246)
Q Consensus 61 sPSIl~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~-FVpN~t-fgp~~I~~ir~~t~~plDvHLM----------V~~P~ 128 (246)
+-|-....-.-+.+.++.+.+.|.+++-+-.-..+ |.|+++ -..+.+++..+..++.+-.+.. ..++.
T Consensus 4 g~~t~~~~~~~l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~~~~~~~~~~~~~~~~ 83 (275)
T PRK09856 4 GMFTCGHQRLPIEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIGYTPETNGYPYNMMLGDEH 83 (275)
T ss_pred eeeehhheeCCHHHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEEecCcccCcCccccCCCHH
Confidence 33334444456899999999999998887422222 334332 1233333333334665544321 11221
Q ss_pred ----------cchHHHHhcCCCEEEEccCCc-----c-------cccHHHHHHHHHHcCCcEEEEEcCCC--------Ch
Q 025927 129 ----------QRVPDFIKAGADIVSVHCEQS-----S-------TIHLHRTLNQIKDLGAKAGVVLNPAT--------SL 178 (246)
Q Consensus 129 ----------~~i~~~~~agad~It~H~E~~-----~-------~~~~~~~i~~Ik~~G~k~GlAlnP~T--------pv 178 (246)
+.++.....|++.|.+|.=.. . .+.+.++....++.|++.+ +-|-+ ..
T Consensus 84 ~r~~~~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~--iE~~~~~~~~~~~t~ 161 (275)
T PRK09856 84 MRRESLDMIKLAMDMAKEMNAGYTLISAAHAGYLTPPNVIWGRLAENLSELCEYAENIGMDLI--LEPLTPYESNVVCNA 161 (275)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEE--EecCCCCcccccCCH
Confidence 123344557999999975210 0 0124455666666776554 44422 24
Q ss_pred HHHHHhhhhcce-EEEEeecCCC
Q 025927 179 SAIECVLDVVDL-VLIMSVNPGF 200 (246)
Q Consensus 179 e~l~~~l~~vD~-VLvMsV~PGf 200 (246)
+.+..+++.++. -+-...+++.
T Consensus 162 ~~~~~l~~~~~~~~v~~~~D~~h 184 (275)
T PRK09856 162 NDVLHALALVPSPRLFSMVDICA 184 (275)
T ss_pred HHHHHHHHHcCCCcceeEEeecc
Confidence 666677777652 2233456653
No 412
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed
Probab=70.25 E-value=29 Score=33.05 Aligned_cols=52 Identities=19% Similarity=0.207 Sum_probs=32.7
Q ss_pred cceEEEEeecCCCCCCcccHHHHHHHHHHHHHHHhcC-CCCeEEEeCCCChhhhhhccc
Q 025927 188 VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKG-VNPWIEVDGGVGPKNAYKVPN 245 (246)
Q Consensus 188 vD~VLvMsV~PGfgGQ~F~~~~l~KI~~lr~l~~~~~-~~~~I~VDGGI~~e~i~~l~~ 245 (246)
+|.|++=+..|.+ .-.++.. +++|+.+++.| .+..|++=||||.+|++++.+
T Consensus 228 ~d~I~LDn~~~~~---g~l~~~v---~~vr~~ld~~g~~~v~IeaSGgI~~~ni~~ya~ 280 (343)
T PRK08662 228 LDGVRLDTPSSRR---GNFRKIV---REVRWTLDIRGYEHVKIFVSGGLDPERIRELRD 280 (343)
T ss_pred CCEEEcCCCCCCC---ccHHHHH---HHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHH
Confidence 7888885444311 1123333 34455555554 347899999999999998754
No 413
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=70.17 E-value=29 Score=32.40 Aligned_cols=88 Identities=14% Similarity=0.084 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHcCCCEEEeeecc--CcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEEEccCC
Q 025927 71 KLGEQVKAVELAGCDWIHVDVMD--GRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQ 148 (246)
Q Consensus 71 ~l~~~i~~l~~~g~d~lHiDIMD--G~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It~H~E~ 148 (246)
+..+-++.++++|+|+|++.-.. +.|-. ....+.++++++.+++|+-.===+.+|+...+.+...|+|.|.+=--+
T Consensus 150 ~~~~~a~~le~~G~d~i~vh~rt~~~~~~G--~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVmiGR~~ 227 (321)
T PRK10415 150 NCVEIAQLAEDCGIQALTIHGRTRACLFNG--EAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAA 227 (321)
T ss_pred hHHHHHHHHHHhCCCEEEEecCccccccCC--CcChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEEEChHh
Confidence 45566778899999999887543 23321 234678888888788886555556677777766666899999886543
Q ss_pred cccccHHHHHHHHHH
Q 025927 149 SSTIHLHRTLNQIKD 163 (246)
Q Consensus 149 ~~~~~~~~~i~~Ik~ 163 (246)
. .+|. +++.+++
T Consensus 228 l--~nP~-if~~~~~ 239 (321)
T PRK10415 228 Q--GRPW-IFREIQH 239 (321)
T ss_pred h--cCCh-HHHHHHH
Confidence 2 2332 4445543
No 414
>PRK05926 hypothetical protein; Provisional
Probab=70.10 E-value=23 Score=33.92 Aligned_cols=126 Identities=12% Similarity=0.102 Sum_probs=77.2
Q ss_pred cChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCC--CHHHHhhcccCCCCC-eeEEEec------------cCcccch
Q 025927 67 ANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITI--GPLVVDALRPVTDLP-LDVHLMI------------VEPEQRV 131 (246)
Q Consensus 67 aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tf--gp~~I~~ir~~t~~p-lDvHLMV------------~~P~~~i 131 (246)
.+...+.+.+++. +.|+..+|+= .|.- |+..+ =.++++.|++. +| +.+|-+. .-....+
T Consensus 99 ls~eeI~~~a~~a-~~G~~ei~iv--~G~~-p~~~~e~~~e~i~~Ik~~--~p~i~i~a~s~~Ei~~~~~~~~~~~~e~l 172 (370)
T PRK05926 99 YTPDQLVQSIKEN-PSPITETHIV--AGCF-PSCNLAYYEELFSKIKQN--FPDLHIKALTAIEYAYLSKLDNLPVKEVL 172 (370)
T ss_pred CCHHHHHHHHHHH-hcCCCEEEEE--eCcC-CCCCHHHHHHHHHHHHHh--CCCeeEEECCHHHHHHHHhhcCCCHHHHH
Confidence 4456677777777 5799999986 4764 66433 12445555553 33 5555442 1235668
Q ss_pred HHHHhcCCCEEEE--------------ccCCcccccHHHHHHHHHHcCCcE--EEEEcCCCChHHHHHhhh-----hcce
Q 025927 132 PDFIKAGADIVSV--------------HCEQSSTIHLHRTLNQIKDLGAKA--GVVLNPATSLSAIECVLD-----VVDL 190 (246)
Q Consensus 132 ~~~~~agad~It~--------------H~E~~~~~~~~~~i~~Ik~~G~k~--GlAlnP~Tpve~l~~~l~-----~vD~ 190 (246)
+.|.++|.+.+.- +.+..+.++..++++.+|++|+++ |+.+.++-..++....+- +.|.
T Consensus 173 ~~LkeAGl~~~~g~GaEi~~e~~r~~~~p~~~t~~e~l~~i~~a~~~Gi~~~sgmi~G~gEt~edrv~~l~~Lr~Lq~~t 252 (370)
T PRK05926 173 QTLKIAGLDSIPGGGAEILVDEIRETLAPGRLSSQGFLEIHKTAHSLGIPSNATMLCYHRETPEDIVTHMSKLRALQDKT 252 (370)
T ss_pred HHHHHcCcCccCCCCchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCcccCceEEeCCCCHHHHHHHHHHHHhcCCcc
Confidence 8999999987652 222212345678999999999885 777777766655544432 2555
Q ss_pred EEEEeecC
Q 025927 191 VLIMSVNP 198 (246)
Q Consensus 191 VLvMsV~P 198 (246)
+=+...-|
T Consensus 253 ~gf~~fIp 260 (370)
T PRK05926 253 SGFKNFIL 260 (370)
T ss_pred CCeeeeEe
Confidence 54444443
No 415
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=70.02 E-value=17 Score=34.29 Aligned_cols=122 Identities=20% Similarity=0.163 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHcCCCEEEeeec--------------------cCcccCCCCCCHHHHhhcccCCCCCeeEEEec------
Q 025927 71 KLGEQVKAVELAGCDWIHVDVM--------------------DGRFVPNITIGPLVVDALRPVTDLPLDVHLMI------ 124 (246)
Q Consensus 71 ~l~~~i~~l~~~g~d~lHiDIM--------------------DG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV------ 124 (246)
.+.+..+++.++|.|.+-+-.- =|.+-..+-|--+++++||+..+.|+-+-+=.
T Consensus 143 ~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~~ 222 (337)
T PRK13523 143 AFKQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVRISASDYHPG 222 (337)
T ss_pred HHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCC
Q ss_pred ----cCcccchHHHHhcCCCEEEEccCC--------cccccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhhh--cce
Q 025927 125 ----VEPEQRVPDFIKAGADIVSVHCEQ--------SSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV--VDL 190 (246)
Q Consensus 125 ----~~P~~~i~~~~~agad~It~H~E~--------~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~~--vD~ 190 (246)
++...+++.+.++|+|+|++|.-+ . ......+.+.||+.--.+=++..-=++.+..+.+|.. +|+
T Consensus 223 G~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~-~~~~~~~~~~ik~~~~ipVi~~G~i~~~~~a~~~l~~g~~D~ 301 (337)
T PRK13523 223 GLTVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVY-PGYQVPFAEHIREHANIATGAVGLITSGAQAEEILQNNRADL 301 (337)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCC-ccccHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCCh
Q ss_pred EEE
Q 025927 191 VLI 193 (246)
Q Consensus 191 VLv 193 (246)
|.+
T Consensus 302 V~~ 304 (337)
T PRK13523 302 IFI 304 (337)
T ss_pred HHh
No 416
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=69.85 E-value=34 Score=31.89 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=21.2
Q ss_pred ChhhHHHHHHHHHHcCCCEEEee
Q 025927 68 NFAKLGEQVKAVELAGCDWIHVD 90 (246)
Q Consensus 68 D~~~l~~~i~~l~~~g~d~lHiD 90 (246)
+..+..+.+++++++|+--+|+.
T Consensus 91 ~~~~v~r~V~~~~~aGaagi~IE 113 (292)
T PRK11320 91 GAFNIARTVKSMIKAGAAAVHIE 113 (292)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEe
Confidence 77899999999999999999984
No 417
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=69.81 E-value=21 Score=34.94 Aligned_cols=131 Identities=13% Similarity=0.266 Sum_probs=75.1
Q ss_pred ccChhhHHHHHHHHHHcCCCEEEeeeccCc---ccCCCCCC---HHHHhhcccCCCCCeeEEEeccCcccc----hHHHH
Q 025927 66 SANFAKLGEQVKAVELAGCDWIHVDVMDGR---FVPNITIG---PLVVDALRPVTDLPLDVHLMIVEPEQR----VPDFI 135 (246)
Q Consensus 66 ~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~---FVpN~tfg---p~~I~~ir~~t~~plDvHLMV~~P~~~----i~~~~ 135 (246)
+-++..+-++++.+.+.|++.+ -+.|.+ |-.++.-. .+.++.++++.++ ..+++...+|... ++.+.
T Consensus 183 sr~~e~Il~ei~~l~~~G~keI--~l~g~~~~~yG~d~~~~~~l~~Ll~~l~~~~gi-~~ir~~~~~p~~i~~ell~~l~ 259 (459)
T PRK14338 183 SRPLAEIVEEVRRIAARGAKEI--TLLGQIVDSYGHDLPGRPDLADLLEAVHEIPGL-ERLRFLTSHPAWMTDRLIHAVA 259 (459)
T ss_pred cCCHHHHHHHHHHHHHCCCeEE--EEeeecCCCcccccCChHHHHHHHHHHHhcCCc-ceEEEEecChhhcCHHHHHHHh
Confidence 5678888899999999888765 444432 21111001 2345555554332 2567777788644 55555
Q ss_pred hc--CCCEEEEccCCcc------------cccHHHHHHHHHHc--CCcEE--EEE-cCCCChHHHHHhhhh-----cceE
Q 025927 136 KA--GADIVSVHCEQSS------------TIHLHRTLNQIKDL--GAKAG--VVL-NPATSLSAIECVLDV-----VDLV 191 (246)
Q Consensus 136 ~a--gad~It~H~E~~~------------~~~~~~~i~~Ik~~--G~k~G--lAl-nP~Tpve~l~~~l~~-----vD~V 191 (246)
+. |+..+.+-+|+.+ .++..+.++.+|+. |+.++ +.+ -|+-..++++..++. +|.+
T Consensus 260 ~~~~~~~~v~lglQSgsd~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~i~~d~IvG~PgET~ed~~~ti~~l~~l~~~~v 339 (459)
T PRK14338 260 RLPKCCPHINLPVQAGDDEVLKRMRRGYTVARYRELIARIREAIPDVSLTTDIIVGHPGETEEQFQRTYDLLEEIRFDKV 339 (459)
T ss_pred cccccccceecCcccCCHHHHHhccCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHcCCCEe
Confidence 53 4677777777641 12344667777877 55543 222 277777777665543 4544
Q ss_pred --EEEeecCC
Q 025927 192 --LIMSVNPG 199 (246)
Q Consensus 192 --LvMsV~PG 199 (246)
..++..||
T Consensus 340 ~i~~ysp~pG 349 (459)
T PRK14338 340 HIAAYSPRPG 349 (459)
T ss_pred EEEecCCCCC
Confidence 44666676
No 418
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=69.69 E-value=98 Score=30.75 Aligned_cols=151 Identities=18% Similarity=0.282 Sum_probs=85.4
Q ss_pred cccccCCCCCcEEeeeecccCh---hhHHHHHHHH-----HHcCCCEEEeeeccCcccCCCCCCH----HHHhhcccCCC
Q 025927 48 ARVDKFSKSDIIVSPSILSANF---AKLGEQVKAV-----ELAGCDWIHVDVMDGRFVPNITIGP----LVVDALRPVTD 115 (246)
Q Consensus 48 ~~~~~~~~~~~~IsPSIl~aD~---~~l~~~i~~l-----~~~g~d~lHiDIMDG~FVpN~tfgp----~~I~~ir~~t~ 115 (246)
-|-|+---++..|..-| +|. ..+.+.++.+ +..| +.+-.|+.|=.+.++ .| +.|+.+++.++
T Consensus 82 ~rhe~tf~np~~Ia~eI--~D~l~~e~i~~r~~~~~~~~~~rvG-~~~~AD~IaL~~~s~---dp~~v~~~Vk~V~~~~d 155 (450)
T PRK04165 82 YRHEKTFFNPTGIAVDV--SDTMDDEEIDARLKKINNFQFERVG-EILKLDMVALRNASG---DPEKFAKAVKKVAETTD 155 (450)
T ss_pred eecCcCCCCCCEEEEEE--eCCCChHHHHHHHHHhhcchHhhhc-ccccCCEEEEeCCCC---CHHHHHHHHHHHHHhcC
Confidence 45565444577787777 333 4455556666 4445 233345555455444 23 45666666567
Q ss_pred CCeeEEEeccCcccchHHHHhcCCC---E-EEEccCCcccccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhhh---c
Q 025927 116 LPLDVHLMIVEPEQRVPDFIKAGAD---I-VSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV---V 188 (246)
Q Consensus 116 ~plDvHLMV~~P~~~i~~~~~agad---~-It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~~---v 188 (246)
.|+ =+...||+..- .-.++|++ . -+.. .+++..+...+++.|+.+.+ ..++ ++.++..+.. .
T Consensus 156 vPL--SIDT~dpevle-aAleagad~~plI~Sat-----~dN~~~m~~la~~yg~pvVv-~~~d--l~~L~~lv~~~~~~ 224 (450)
T PRK04165 156 LPL--ILCSEDPAVLK-AALEVVADRKPLLYAAT-----KENYEEMAELAKEYNCPLVV-KAPN--LEELKELVEKLQAA 224 (450)
T ss_pred CCE--EEeCCCHHHHH-HHHHhcCCCCceEEecC-----cchHHHHHHHHHHcCCcEEE-Echh--HHHHHHHHHHHHHc
Confidence 775 46678887644 44566776 2 2322 24567788888999987755 3333 6666665543 2
Q ss_pred ceEEEEeecCCCCCCcccHHHHHHHHHHHHH
Q 025927 189 DLVLIMSVNPGFGGQSFIESQVKKISDLRRM 219 (246)
Q Consensus 189 D~VLvMsV~PGfgGQ~F~~~~l~KI~~lr~l 219 (246)
.+ -=.-++||++| ..++++...++|++
T Consensus 225 GI-~dIILDPg~gg---f~ksl~~~~~iRr~ 251 (450)
T PRK04165 225 GI-KDLVLDPGTEN---IKETLDDFVQIRRA 251 (450)
T ss_pred CC-CcEEECCCCch---hhhhHHHHHHHHhh
Confidence 22 23446899874 22333445555555
No 419
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=69.66 E-value=51 Score=28.67 Aligned_cols=138 Identities=17% Similarity=0.172 Sum_probs=77.5
Q ss_pred EeeeecccC--hhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccC----ccc----
Q 025927 60 VSPSILSAN--FAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVE----PEQ---- 129 (246)
Q Consensus 60 IsPSIl~aD--~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~----P~~---- 129 (246)
++++++..+ ...+++.++.+.+.|.+.+-+-- +.+.+.-.-.+..++.+-+-.++.+-.|--..+ |..
T Consensus 3 m~~~~~t~~~~~~~l~~~l~~~~~~G~~gvEi~~--~~~~~~~~~~~~~l~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~ 80 (274)
T COG1082 3 MKLGIFTNDFGELPLEEILRKAAELGFDGVELSP--GDLFPADYKELAELKELLADYGLEITSLAPFSNNLLSPDEEERE 80 (274)
T ss_pred cccceecccCCCCCHHHHHHHHHHhCCCeEecCC--cccCCchhhhHHHHHHHHHHcCcEEEeecccCCCcCCCchhhHH
Confidence 445555555 47888999999999977666554 333222111155555554445777776655554 222
Q ss_pred --------chHHHHhcCCCEEEEccCCcc---------------cccHHHHHHHHHHcCCcEEEEE--cCCCChHHH---
Q 025927 130 --------RVPDFIKAGADIVSVHCEQSS---------------TIHLHRTLNQIKDLGAKAGVVL--NPATSLSAI--- 181 (246)
Q Consensus 130 --------~i~~~~~agad~It~H~E~~~---------------~~~~~~~i~~Ik~~G~k~GlAl--nP~Tpve~l--- 181 (246)
.++...+.|++.+++|.=... ...+.++....++.|++.++.- .|++-++..
T Consensus 81 ~~~~~~~~~i~~a~~lg~~~vv~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~i~l~~e~~~~~~~~~~~~~~~ 160 (274)
T COG1082 81 EALEELKRAIELAKELGAKVVVVHPGLGAGADDPDSPEEARERWAEALEELAEIAEELGIGLALENHHHPGNVVETGADA 160 (274)
T ss_pred HHHHHHHHHHHHHHHcCCCeEEeecccCCcCCCCCCCcccHHHHHHHHHHHHHHHHHhCCceEEeecCCccceeecCHHH
Confidence 344456689998888762100 1123344455567766666665 345444432
Q ss_pred HHhhhhcc-eEEEEeecCC
Q 025927 182 ECVLDVVD-LVLIMSVNPG 199 (246)
Q Consensus 182 ~~~l~~vD-~VLvMsV~PG 199 (246)
..++..++ -=+-+..++|
T Consensus 161 ~~~~~~~~~~~v~~~lD~~ 179 (274)
T COG1082 161 LDLLREVDSPNVGLLLDTG 179 (274)
T ss_pred HHHHHhcCCCceEEEEecC
Confidence 23333333 3355778887
No 420
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=69.59 E-value=14 Score=34.43 Aligned_cols=79 Identities=28% Similarity=0.350 Sum_probs=68.1
Q ss_pred hhhHHHHHHHHHHcCCCEEEeee--ccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEEEcc
Q 025927 69 FAKLGEQVKAVELAGCDWIHVDV--MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHC 146 (246)
Q Consensus 69 ~~~l~~~i~~l~~~g~d~lHiDI--MDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It~H~ 146 (246)
+.+.++-.+.+++.|+|+|=+=| .=|.|...=.+..+.++.|++.+++|+-.|==.--|...+.+.++.|..-|-+.-
T Consensus 154 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ldfd~l~~I~~~~~vPLVLHGgSG~~~e~~~kai~~GI~KiNi~T 233 (286)
T PRK12738 154 LTDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVDVPLVLHGASDVPDEFVRRTIELGVTKVNVAT 233 (286)
T ss_pred CCCHHHHHHHHHHhCCCEEEeccCcccCCCCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcCCeEEEeCc
Confidence 66777888888889999999988 7888853334556799999998999999999999999999999999999999987
Q ss_pred C
Q 025927 147 E 147 (246)
Q Consensus 147 E 147 (246)
|
T Consensus 234 ~ 234 (286)
T PRK12738 234 E 234 (286)
T ss_pred H
Confidence 6
No 421
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=69.53 E-value=82 Score=27.97 Aligned_cols=152 Identities=20% Similarity=0.142 Sum_probs=87.1
Q ss_pred HHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEEEccCCccc
Q 025927 72 LGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 151 (246)
Q Consensus 72 l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It~H~E~~~~ 151 (246)
..+.++.+++. ++++|+==-||.. ....-..+.++.+.+.++.|+.+===+.+.+ .++.+.++|++.+.+=-++.
T Consensus 32 p~~~a~~~~~~-~~~l~ivDldga~-~g~~~n~~~i~~i~~~~~~pv~~gGGIrs~e-dv~~l~~~G~~~vivGtaa~-- 106 (228)
T PRK04128 32 PVEIALRFSEY-VDKIHVVDLDGAF-EGKPKNLDVVKNIIRETGLKVQVGGGLRTYE-SIKDAYEIGVENVIIGTKAF-- 106 (228)
T ss_pred HHHHHHHHHHh-CCEEEEEECcchh-cCCcchHHHHHHHHhhCCCCEEEcCCCCCHH-HHHHHHHCCCCEEEECchhc--
Confidence 34445556666 8999982224433 1122246678888776666655433344444 46677888999999876642
Q ss_pred ccHHHHHHH-HHHcCCcEEEEEcC---------------CCChHHHHHhhhhcceEEEEeecCCCCCCcccHHHHHHHHH
Q 025927 152 IHLHRTLNQ-IKDLGAKAGVVLNP---------------ATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISD 215 (246)
Q Consensus 152 ~~~~~~i~~-Ik~~G~k~GlAlnP---------------~Tpve~l~~~l~~vD~VLvMsV~PGfgGQ~F~~~~l~KI~~ 215 (246)
++. +++. .++.| ++-++|.- -++++.++.+-+.+..+++++|+---..|-++ .+.+
T Consensus 107 -~~~-~l~~~~~~~g-~ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~~~~ii~t~i~~dGt~~G~d-----~l~~ 178 (228)
T PRK04128 107 -DLE-FLEKVTSEFE-GITVSLDVKGGRIAVKGWLEESSIKVEDAYEMLKNYVNRFIYTSIERDGTLTGIE-----EIER 178 (228)
T ss_pred -CHH-HHHHHHHHcC-CEEEEEEccCCeEecCCCeEcCCCCHHHHHHHHHHHhCEEEEEeccchhcccCHH-----HHHH
Confidence 443 3333 33444 23343331 12335555554557889999999866666665 2222
Q ss_pred HHHHHHhcCCCCeEEEeCCCCh-hhhhhc
Q 025927 216 LRRMCLEKGVNPWIEVDGGVGP-KNAYKV 243 (246)
Q Consensus 216 lr~l~~~~~~~~~I~VDGGI~~-e~i~~l 243 (246)
.+. +..+.+=|||+. +.+.++
T Consensus 179 ---~~~----~~pviasGGv~~~~Dl~~l 200 (228)
T PRK04128 179 ---FWG----DEEFIYAGGVSSAEDVKKL 200 (228)
T ss_pred ---hcC----CCCEEEECCCCCHHHHHHH
Confidence 111 346778899974 455443
No 422
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=69.52 E-value=17 Score=33.50 Aligned_cols=78 Identities=15% Similarity=0.158 Sum_probs=60.0
Q ss_pred hhHHHHHHHHHHcCCCEEEeee--ccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEEEccC
Q 025927 70 AKLGEQVKAVELAGCDWIHVDV--MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCE 147 (246)
Q Consensus 70 ~~l~~~i~~l~~~g~d~lHiDI--MDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It~H~E 147 (246)
.+.++-.+..++.|+|+|=+-+ .=|.|-..-.+|.+.+++|++.+++|+-+|=-.--|..-+..+.++|++-|.+--+
T Consensus 153 t~~eea~~f~~~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~iPlV~hG~SGI~~e~~~~~i~~G~~kinv~T~ 232 (281)
T PRK06806 153 TSTTEAKRFAEETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVVHIPLVLHGGSGISPEDFKKCIQHGIRKINVATA 232 (281)
T ss_pred CCHHHHHHHHHhhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHcCCcEEEEhHH
Confidence 4554444555667999999844 66666333468999999999988999999986666667788999999999998765
No 423
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=69.41 E-value=74 Score=27.45 Aligned_cols=129 Identities=11% Similarity=0.102 Sum_probs=69.0
Q ss_pred EeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCc-----ccchHHHHhcCCCEEEEccCCccc-----------
Q 025927 88 HVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEP-----EQRVPDFIKAGADIVSVHCEQSST----------- 151 (246)
Q Consensus 88 HiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P-----~~~i~~~~~agad~It~H~E~~~~----------- 151 (246)
.+-+.+|...-+..+=.++++.+++. ++. +-+. .|- ...++.+.+ ..|.+.+..++...
T Consensus 68 ~I~~~GGEPll~~~~~~~li~~~~~~-g~~--~~i~-TNG~~~~~~~~~~~ll~-~~d~v~isl~~~~~~~~~~~~g~~~ 142 (235)
T TIGR02493 68 GVTFSGGEPLLQPEFLSELFKACKEL-GIH--TCLD-TSGFLGGCTEAADELLE-YTDLVLLDIKHFNPEKYKKLTGVSL 142 (235)
T ss_pred eEEEeCcccccCHHHHHHHHHHHHHC-CCC--EEEE-cCCCCCccHHHHHHHHH-hCCEEEEeCCCCCHHHHHHHHCCCc
Confidence 35566676544333223455555543 333 2222 222 123444444 45777777765310
Q ss_pred ccHHHHHHHHHHcCCcEEEE--EcCC--CChHHHHH---hhhh---cceEEEEeecC-CC----------CCCcccHHHH
Q 025927 152 IHLHRTLNQIKDLGAKAGVV--LNPA--TSLSAIEC---VLDV---VDLVLIMSVNP-GF----------GGQSFIESQV 210 (246)
Q Consensus 152 ~~~~~~i~~Ik~~G~k~GlA--lnP~--Tpve~l~~---~l~~---vD~VLvMsV~P-Gf----------gGQ~F~~~~l 210 (246)
....+.++.+++.|+.+.+. +.|+ ...++++. ++.. +..+-+|...| |+ .+..+.+-..
T Consensus 143 ~~v~~~i~~l~~~g~~~~v~~vv~~~~~~n~~ei~~l~~~~~~l~~~~~~~~~p~~~~g~~~~~~~~~~~~~~~~~~~~~ 222 (235)
T TIGR02493 143 QPTLDFAKYLAKRNKPIWIRYVLVPGYTDSEEDIEALAEFVKTLPNVERVEVLPYHQLGVYKWEALGIEYPLEGVKPPNK 222 (235)
T ss_pred HHHHHHHHHHHhCCCcEEEEEeeeCCcCCCHHHHHHHHHHHHhCCCCceEEecCCCcccHHHHHHcCCcCccCCCCCCCH
Confidence 12446677788889887544 4464 23444444 4443 34566676666 43 3445667778
Q ss_pred HHHHHHHHHHH
Q 025927 211 KKISDLRRMCL 221 (246)
Q Consensus 211 ~KI~~lr~l~~ 221 (246)
+.|+++++...
T Consensus 223 ~~~~~~~~~~~ 233 (235)
T TIGR02493 223 EQLERAAEIFK 233 (235)
T ss_pred HHHHHHHHHHh
Confidence 88888887654
No 424
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=69.39 E-value=1.2e+02 Score=30.97 Aligned_cols=146 Identities=15% Similarity=0.185 Sum_probs=79.1
Q ss_pred hhhHHHHHHHHHHcCCCEEEeeeccC-cccCCCCC-CH---HHHhhcccC-CCCCeeEEEeccC-------ccc----ch
Q 025927 69 FAKLGEQVKAVELAGCDWIHVDVMDG-RFVPNITI-GP---LVVDALRPV-TDLPLDVHLMIVE-------PEQ----RV 131 (246)
Q Consensus 69 ~~~l~~~i~~l~~~g~d~lHiDIMDG-~FVpN~tf-gp---~~I~~ir~~-t~~plDvHLMV~~-------P~~----~i 131 (246)
....-+-++.|.++|++++ ++.-| +|--.+.| ++ +.++.+|+. .+.++-+++=..| |++ ++
T Consensus 25 t~d~l~ia~~l~~~G~~~i--E~~ggatfd~~~rfl~edp~e~l~~l~~~~~~~~l~~l~Rg~N~~gy~~ypd~vv~~~v 102 (592)
T PRK09282 25 TEDMLPIAEKLDKVGFWSL--EVWGGATFDVCIRYLNEDPWERLRKLKKALPNTPLQMLLRGQNLVGYRHYPDDVVEKFV 102 (592)
T ss_pred HHHHHHHHHHHHHcCCCEE--EecCCccchhhcccCCccHHHHHHHHHHhCCCCEEEEEeccccccccccccchhhHHHH
Confidence 3444556677788888764 55544 33222212 22 334555544 3455555443322 333 35
Q ss_pred HHHHhcCCCEEEEccCCcccccHHHHHHHHHHcCCcEEEEE----cCCCChHHHHHhhhh-----cceEEEEeecCCCCC
Q 025927 132 PDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL----NPATSLSAIECVLDV-----VDLVLIMSVNPGFGG 202 (246)
Q Consensus 132 ~~~~~agad~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAl----nP~Tpve~l~~~l~~-----vD~VLvMsV~PGfgG 202 (246)
+...++|+|.+-+=.-.....++...++..|+.|..+-.++ .|-.+++.+.+++.. +|.|-+- .=.|
T Consensus 103 ~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~~~Gad~I~i~----Dt~G 178 (592)
T PRK09282 103 EKAAENGIDIFRIFDALNDVRNMEVAIKAAKKAGAHVQGTISYTTSPVHTIEKYVELAKELEEMGCDSICIK----DMAG 178 (592)
T ss_pred HHHHHCCCCEEEEEEecChHHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEEC----CcCC
Confidence 55577899976554322123567788899999999887666 444445555554432 5544331 2345
Q ss_pred CcccHHHHHHHHHHHHHH
Q 025927 203 QSFIESQVKKISDLRRMC 220 (246)
Q Consensus 203 Q~F~~~~l~KI~~lr~l~ 220 (246)
...=..+.+-++.+|+..
T Consensus 179 ~~~P~~~~~lv~~lk~~~ 196 (592)
T PRK09282 179 LLTPYAAYELVKALKEEV 196 (592)
T ss_pred CcCHHHHHHHHHHHHHhC
Confidence 444445555566666543
No 425
>PLN02561 triosephosphate isomerase
Probab=69.32 E-value=64 Score=29.49 Aligned_cols=112 Identities=18% Similarity=0.250 Sum_probs=68.7
Q ss_pred hHHHHhcCCCEEEE-ccCCc-----ccccHHHHHHHHHHcCCcEEEEEcCCCCh-------------HHHHHhhhhcceE
Q 025927 131 VPDFIKAGADIVSV-HCEQS-----STIHLHRTLNQIKDLGAKAGVVLNPATSL-------------SAIECVLDVVDLV 191 (246)
Q Consensus 131 i~~~~~agad~It~-H~E~~-----~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpv-------------e~l~~~l~~vD~V 191 (246)
.+.+.++|++++.+ |.|-= +.+.+.+-++.+.++|+++=+.+. .++ +.++..+..++..
T Consensus 81 ~~mL~d~G~~~viiGHSERR~~f~Etd~~v~~Kv~~al~~gl~pIvCvG--E~~~er~~~~~~~~v~~Ql~~~l~~v~~~ 158 (253)
T PLN02561 81 AEMLVNLGIPWVILGHSERRALLGESNEFVGDKVAYALSQGLKVIACVG--ETLEQRESGSTMDVVAAQTKAIADKVSDW 158 (253)
T ss_pred HHHHHHcCCCEEEECcccccCccCCChHHHHHHHHHHHHCcCEEEEEcC--CCHHHHhcCCHHHHHHHHHHHHHhccccc
Confidence 56778899986665 55520 123355666677889999877776 332 4455555555432
Q ss_pred --EEEeecCCC---CCCcccHHHHHHHHH-HHHHHHh-----cCCCCeEEEeCCCChhhhhhcc
Q 025927 192 --LIMSVNPGF---GGQSFIESQVKKISD-LRRMCLE-----KGVNPWIEVDGGVGPKNAYKVP 244 (246)
Q Consensus 192 --LvMsV~PGf---gGQ~F~~~~l~KI~~-lr~l~~~-----~~~~~~I~VDGGI~~e~i~~l~ 244 (246)
+++.-||=| +|+.=.++-.+.+.. +|+.+.+ ..-+..|.-=|||+.+|+.++.
T Consensus 159 ~~iiIAYEPvWAIGtG~~as~~~~~~v~~~Ir~~l~~~~~~~~a~~i~ILYGGSV~~~N~~~l~ 222 (253)
T PLN02561 159 ANVVLAYEPVWAIGTGKVATPAQAQEVHDELRKWLHKNVSPEVAATTRIIYGGSVTGANCKELA 222 (253)
T ss_pred cceEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhcccccccceEEEeCCcCHHHHHHHh
Confidence 678889933 466544444433332 3333321 2235679999999999998874
No 426
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=69.11 E-value=16 Score=35.22 Aligned_cols=105 Identities=21% Similarity=0.357 Sum_probs=62.6
Q ss_pred EEeeeecccChhhHH---HHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccC-----CCCCe--eEEEeccCcc
Q 025927 59 IVSPSILSANFAKLG---EQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-----TDLPL--DVHLMIVEPE 128 (246)
Q Consensus 59 ~IsPSIl~aD~~~l~---~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~-----t~~pl--DvHLMV~~P~ 128 (246)
+.-.|+.+.|..+.+ +|+++|+++|+|.+-+=|-|-.-.. .++.|++. +++|+ |+|. ||.
T Consensus 17 I~VQSMt~t~t~Dv~atv~QI~~L~~aGceivRvavp~~~~a~-------al~~I~~~l~~~g~~iPlVADIHF---d~~ 86 (359)
T PF04551_consen 17 ISVQSMTNTDTRDVEATVAQIKRLEEAGCEIVRVAVPDMEAAE-------ALKEIKKRLRALGSPIPLVADIHF---DYR 86 (359)
T ss_dssp -EEEEE--S-TT-HHHHHHHHHHHHHCT-SEEEEEE-SHHHHH-------HHHHHHHHHHCTT-SS-EEEEEST---TCH
T ss_pred EEEEecCCCCcccHHHHHHHHHHHHHcCCCEEEEcCCCHHHHH-------HHHHHHHhhccCCCCCCeeeecCC---CHH
Confidence 334566666555555 8889999999999999887755433 35555555 67776 5554 444
Q ss_pred cchHHHHhcCCCEEEEccCCc---------c-cccHHHHHHHHHHcCCcEEEEEcCC
Q 025927 129 QRVPDFIKAGADIVSVHCEQS---------S-TIHLHRTLNQIKDLGAKAGVVLNPA 175 (246)
Q Consensus 129 ~~i~~~~~agad~It~H~E~~---------~-~~~~~~~i~~Ik~~G~k~GlAlnP~ 175 (246)
.-+.. +++ +|-|-+-+=+. . .+.+..+++..|++|+-.=+-+|-+
T Consensus 87 lAl~a-~~~-v~kiRINPGNi~~~~~~~~g~~~~~~~~vv~~ake~~ipIRIGvN~G 141 (359)
T PF04551_consen 87 LALEA-IEA-VDKIRINPGNIVDEFQEELGSIREKVKEVVEAAKERGIPIRIGVNSG 141 (359)
T ss_dssp HHHHH-HHC--SEEEE-TTTSS----SS-SS-HHHHHHHHHHHHHHT-EEEEEEEGG
T ss_pred HHHHH-HHH-hCeEEECCCcccccccccccchHHHHHHHHHHHHHCCCCEEEecccc
Confidence 43433 555 77776665543 1 3457889999999998887778866
No 427
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=69.10 E-value=51 Score=31.27 Aligned_cols=130 Identities=18% Similarity=0.187 Sum_probs=71.0
Q ss_pred HHHcCCCEEEeeeccCcccCCC-CCCH----HHHhhcccCCCCCeeEEEeccCcccchH----HHHhcCCC-EEEEccCC
Q 025927 79 VELAGCDWIHVDVMDGRFVPNI-TIGP----LVVDALRPVTDLPLDVHLMIVEPEQRVP----DFIKAGAD-IVSVHCEQ 148 (246)
Q Consensus 79 l~~~g~d~lHiDIMDG~FVpN~-tfgp----~~I~~ir~~t~~plDvHLMV~~P~~~i~----~~~~agad-~It~H~E~ 148 (246)
.+++|+|+|=+=...+ . |+- .-++ ++++.+.+.+++|+-+ +.+.||+.--+ .+..++-. .+.--+.
T Consensus 85 ~~~~GAd~Idl~~~s~-d-p~~~d~~~~e~~~~Vk~V~eavd~PL~I-d~s~n~~kD~evleaale~~~g~~pLInSat- 160 (319)
T PRK04452 85 VEEYGADMITLHLIST-D-PNGKDKSPEEAAKTVEEVLQAVDVPLII-GGSGNPEKDAEVLEKVAEAAEGERCLLGSAE- 160 (319)
T ss_pred HHHhCCCEEEEECCCC-C-cccccchHHHHHHHHHHHHHhCCCCEEE-ecCCCCCCCHHHHHHHHHHhCCCCCEEEECC-
Confidence 3588999976654333 2 332 1111 3666666667888664 55555444333 33333323 3333333
Q ss_pred cccccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhhhcceEEE----EeecCCCC----CCcccHHHHHHHHHH
Q 025927 149 SSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLI----MSVNPGFG----GQSFIESQVKKISDL 216 (246)
Q Consensus 149 ~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~~vD~VLv----MsV~PGfg----GQ~F~~~~l~KI~~l 216 (246)
.++..++...++++|+.+.+- .|.. ++..+.+...+.-.=+ +-++|+-. |+..--+++++||++
T Consensus 161 --~en~~~i~~lA~~y~~~Vva~-s~~D-ln~ak~L~~~l~~~Gi~~edIviDP~~~~lg~g~e~~~~~~e~IR~a 232 (319)
T PRK04452 161 --EDNYKKIAAAAMAYGHAVIAW-SPLD-INLAKQLNILLTELGVPRERIVMDPTTGALGYGIEYSYSVMERIRLA 232 (319)
T ss_pred --HHHHHHHHHHHHHhCCeEEEE-cHHH-HHHHHHHHHHHHHcCCCHHHEEEeCCcccccCCHHHHHHHHHHHHHH
Confidence 346888999999999866443 3332 6655555432211101 22356655 888777777777664
No 428
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=68.88 E-value=13 Score=34.54 Aligned_cols=79 Identities=22% Similarity=0.282 Sum_probs=68.8
Q ss_pred hhhHHHHHHHHHHcCCCEEEeee--ccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEEEcc
Q 025927 69 FAKLGEQVKAVELAGCDWIHVDV--MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHC 146 (246)
Q Consensus 69 ~~~l~~~i~~l~~~g~d~lHiDI--MDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It~H~ 146 (246)
+.+.++-.+.+++.|+|+|=+-| .=|.|...=.+.++.++.|++.++.|+-.|==.--|+..+.+.++.|+.-|-+.-
T Consensus 154 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~T 233 (284)
T PRK09195 154 YTDPAQAREFVEATGIDSLAVAIGTAHGMYKGEPKLDFDRLENIRQWVNIPLVLHGASGLPTKDIQQTIKLGICKVNVAT 233 (284)
T ss_pred CCCHHHHHHHHHHHCcCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcCCeEEEeCc
Confidence 66777888888889999999988 6788854445677899999998899999999999999999999999999999987
Q ss_pred C
Q 025927 147 E 147 (246)
Q Consensus 147 E 147 (246)
|
T Consensus 234 ~ 234 (284)
T PRK09195 234 E 234 (284)
T ss_pred H
Confidence 6
No 429
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=68.81 E-value=85 Score=30.41 Aligned_cols=108 Identities=20% Similarity=0.307 Sum_probs=72.3
Q ss_pred CCCeeEEEeccCccc-------chHHHHhcCCCEEEEccCCcccccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhhh
Q 025927 115 DLPLDVHLMIVEPEQ-------RVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV 187 (246)
Q Consensus 115 ~~plDvHLMV~~P~~-------~i~~~~~agad~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~~ 187 (246)
+.|+-|.=|+..+.. .|..|.++|+++|-+-+- ..+-.+.+..|++.- .+=|+-.-.........-++.
T Consensus 25 ~~Pi~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvav~---~~~~a~al~~I~~~~-~iPlvADIHFd~~lAl~a~~~ 100 (360)
T PRK00366 25 DAPIVVQSMTNTDTADVEATVAQIKRLARAGCEIVRVAVP---DMEAAAALPEIKKQL-PVPLVADIHFDYRLALAAAEA 100 (360)
T ss_pred CCcEEEEecCCCCchhHHHHHHHHHHHHHcCCCEEEEccC---CHHHHHhHHHHHHcC-CCCEEEecCCCHHHHHHHHHh
Confidence 468999999887764 466788899998777554 234456788888654 333333333333333344444
Q ss_pred -cceEEEEeecCCCCCCcccHHHHHHHHHHHHHHHhcCCCCeEEEeCC
Q 025927 188 -VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGG 234 (246)
Q Consensus 188 -vD~VLvMsV~PGfgGQ~F~~~~l~KI~~lr~l~~~~~~~~~I~VDGG 234 (246)
+|.| -+|||.=| ..-+|++++-+...++|....|.|-.|
T Consensus 101 G~~~i---RINPGNig-----~~~~~v~~vv~~ak~~~ipIRIGvN~G 140 (360)
T PRK00366 101 GADAL---RINPGNIG-----KRDERVREVVEAAKDYGIPIRIGVNAG 140 (360)
T ss_pred CCCEE---EECCCCCC-----chHHHHHHHHHHHHHCCCCEEEecCCc
Confidence 6766 88999643 224677888888888888888988655
No 430
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=68.13 E-value=80 Score=27.31 Aligned_cols=115 Identities=20% Similarity=0.226 Sum_probs=67.6
Q ss_pred HHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEEEc-cC--Cc-
Q 025927 74 EQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVH-CE--QS- 149 (246)
Q Consensus 74 ~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It~H-~E--~~- 149 (246)
++++.+.++|+|.+=+|.-+.. .|+-..-.++++.+++..++++-+ =+.+|+. .....++|+|++.+. .- ..
T Consensus 83 ~~~~~a~~aGad~I~~~~~~~~-~p~~~~~~~~i~~~~~~g~~~iiv--~v~t~~e-a~~a~~~G~d~i~~~~~g~t~~~ 158 (219)
T cd04729 83 EEVDALAAAGADIIALDATDRP-RPDGETLAELIKRIHEEYNCLLMA--DISTLEE-ALNAAKLGFDIIGTTLSGYTEET 158 (219)
T ss_pred HHHHHHHHcCCCEEEEeCCCCC-CCCCcCHHHHHHHHHHHhCCeEEE--ECCCHHH-HHHHHHcCCCEEEccCccccccc
Confidence 5889999999999999876643 344323456787887754444433 2345544 567788999999652 10 00
Q ss_pred --ccccHHHHHHHHHHc-CCcEEEEEcCC-CChHHHHHhhhh-cceEEEE
Q 025927 150 --STIHLHRTLNQIKDL-GAKAGVVLNPA-TSLSAIECVLDV-VDLVLIM 194 (246)
Q Consensus 150 --~~~~~~~~i~~Ik~~-G~k~GlAlnP~-Tpve~l~~~l~~-vD~VLvM 194 (246)
........++.+++. ++.+ ...-+ ...+.+..++.. +|.|++-
T Consensus 159 ~~~~~~~~~~l~~i~~~~~ipv--ia~GGI~~~~~~~~~l~~GadgV~vG 206 (219)
T cd04729 159 AKTEDPDFELLKELRKALGIPV--IAEGRINSPEQAAKALELGADAVVVG 206 (219)
T ss_pred cCCCCCCHHHHHHHHHhcCCCE--EEeCCCCCHHHHHHHHHCCCCEEEEc
Confidence 001113566666653 3332 22223 245777777665 7887764
No 431
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=68.05 E-value=21 Score=30.52 Aligned_cols=87 Identities=18% Similarity=0.315 Sum_probs=61.0
Q ss_pred HHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEEEccCCcccccHHHHHHHHHHcCCcEEEEEcCCCChHHHHH
Q 025927 104 PLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIEC 183 (246)
Q Consensus 104 p~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~ 183 (246)
.+.++++|+......-+=+-+++.+. +++.+++|+|.|-+ +..+.+++.++++.+++.+-++-+..+-+-..+.+.+
T Consensus 67 ~~av~~~~~~~~~~~~I~VEv~~~ee-~~ea~~~g~d~I~l--D~~~~~~~~~~v~~l~~~~~~v~ie~SGGI~~~ni~~ 143 (169)
T PF01729_consen 67 EEAVKAARQAAPEKKKIEVEVENLEE-AEEALEAGADIIML--DNMSPEDLKEAVEELRELNPRVKIEASGGITLENIAE 143 (169)
T ss_dssp HHHHHHHHHHSTTTSEEEEEESSHHH-HHHHHHTT-SEEEE--ES-CHHHHHHHHHHHHHHTTTSEEEEESSSSTTTHHH
T ss_pred HHHHHHHHHhCCCCceEEEEcCCHHH-HHHHHHhCCCEEEe--cCcCHHHHHHHHHHHhhcCCcEEEEEECCCCHHHHHH
Confidence 45666666643322225556667544 66778899998875 4444567888888888999999999999999999999
Q ss_pred hhhh-cceEEE
Q 025927 184 VLDV-VDLVLI 193 (246)
Q Consensus 184 ~l~~-vD~VLv 193 (246)
|... +|++-+
T Consensus 144 ya~~gvD~isv 154 (169)
T PF01729_consen 144 YAKTGVDVISV 154 (169)
T ss_dssp HHHTT-SEEEE
T ss_pred HHhcCCCEEEc
Confidence 9764 687654
No 432
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=67.97 E-value=90 Score=27.87 Aligned_cols=141 Identities=18% Similarity=0.133 Sum_probs=81.5
Q ss_pred ChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCH-HHHhhcccC-CCCCeeEEEeccCcccchHHHHhcCCCEEEEc
Q 025927 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGP-LVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVH 145 (246)
Q Consensus 68 D~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp-~~I~~ir~~-t~~plDvHLMV~~P~~~i~~~~~agad~It~H 145 (246)
....-.+-++.|.++|++.+=+- +|.++=.+ +.++.+++. .+..+.++.. .+ .+.++...++|++.|.+-
T Consensus 18 ~~~~k~~i~~~L~~~Gv~~iE~g------~p~~~~~~~e~~~~l~~~~~~~~~~~~~r-~~-~~~v~~a~~~g~~~i~i~ 89 (259)
T cd07939 18 SREEKLAIARALDEAGVDEIEVG------IPAMGEEEREAIRAIVALGLPARLIVWCR-AV-KEDIEAALRCGVTAVHIS 89 (259)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEe------cCCCCHHHHHHHHHHHhcCCCCEEEEecc-CC-HHHHHHHHhCCcCEEEEE
Confidence 33445567788899999987763 35543222 456666552 2333333311 12 345788889999988875
Q ss_pred cCCcc--------------cccHHHHHHHHHHcCCcEEEEEc--CCCChHHHHHhhhh-----cceEEEEeecCCCCCCc
Q 025927 146 CEQSS--------------TIHLHRTLNQIKDLGAKAGVVLN--PATSLSAIECVLDV-----VDLVLIMSVNPGFGGQS 204 (246)
Q Consensus 146 ~E~~~--------------~~~~~~~i~~Ik~~G~k~GlAln--P~Tpve~l~~~l~~-----vD~VLvMsV~PGfgGQ~ 204 (246)
.-... .+.....++++|+.|.++-+.+. ..++.+.+.+++.. +|.|-+ +.-.|..
T Consensus 90 ~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l----~DT~G~~ 165 (259)
T cd07939 90 IPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDASRADPDFLIEFAEVAQEAGADRLRF----ADTVGIL 165 (259)
T ss_pred EecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCCCCCHHHHHHHHHHHHHCCCCEEEe----CCCCCCC
Confidence 42210 12345788899999987654443 23556777766653 444322 2334555
Q ss_pred ccHHHHHHHHHHHHHH
Q 025927 205 FIESQVKKISDLRRMC 220 (246)
Q Consensus 205 F~~~~l~KI~~lr~l~ 220 (246)
.-.++.+-++.+|+..
T Consensus 166 ~P~~v~~lv~~l~~~~ 181 (259)
T cd07939 166 DPFTTYELIRRLRAAT 181 (259)
T ss_pred CHHHHHHHHHHHHHhc
Confidence 5556666666666543
No 433
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=67.97 E-value=28 Score=32.44 Aligned_cols=122 Identities=18% Similarity=0.298 Sum_probs=70.2
Q ss_pred hhHHHHHHHHHHcCCCEEEeeeccCc-----ccC---------------CCCCCHHHHhhcccCCC--CCeeEEEec---
Q 025927 70 AKLGEQVKAVELAGCDWIHVDVMDGR-----FVP---------------NITIGPLVVDALRPVTD--LPLDVHLMI--- 124 (246)
Q Consensus 70 ~~l~~~i~~l~~~g~d~lHiDIMDG~-----FVp---------------N~tfgp~~I~~ir~~t~--~plDvHLMV--- 124 (246)
..+.+..+++.++|.|.+-+-.--|. +.| ..-|.-++|+++|+..+ +++-+-+=.
T Consensus 149 ~~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~ 228 (338)
T cd04733 149 DRFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADF 228 (338)
T ss_pred HHHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHc
Confidence 34556667788899999865433211 112 13455689999998653 444444311
Q ss_pred ----cCcc---cchHHHHhcCCCEEEEccCCc---ccc------------cHHHHHHHHHHc-CCcEEEEEcCC-CChHH
Q 025927 125 ----VEPE---QRVPDFIKAGADIVSVHCEQS---STI------------HLHRTLNQIKDL-GAKAGVVLNPA-TSLSA 180 (246)
Q Consensus 125 ----~~P~---~~i~~~~~agad~It~H~E~~---~~~------------~~~~~i~~Ik~~-G~k~GlAlnP~-Tpve~ 180 (246)
.+++ .+++.+.++|+|+|.+|.-.. ... ......+.||+. ++. |..+-. +..+.
T Consensus 229 ~~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~iP--Vi~~G~i~t~~~ 306 (338)
T cd04733 229 QRGGFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVTKTP--LMVTGGFRTRAA 306 (338)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHcCCC--EEEeCCCCCHHH
Confidence 1222 556777888999999874210 000 012455667764 333 333323 46778
Q ss_pred HHHhhh--hcceEEE
Q 025927 181 IECVLD--VVDLVLI 193 (246)
Q Consensus 181 l~~~l~--~vD~VLv 193 (246)
.+.+|. .+|+|.+
T Consensus 307 a~~~l~~g~aD~V~l 321 (338)
T cd04733 307 MEQALASGAVDGIGL 321 (338)
T ss_pred HHHHHHcCCCCeeee
Confidence 888887 4887765
No 434
>PRK03114 NTPase; Reviewed
Probab=67.95 E-value=18 Score=31.19 Aligned_cols=58 Identities=28% Similarity=0.370 Sum_probs=39.8
Q ss_pred hHHHHHhhhhcceEEEEeecCCCCCCccc-HHHHHH-HHHHHHHHHhcCCCCeEEEeCCCC
Q 025927 178 LSAIECVLDVVDLVLIMSVNPGFGGQSFI-ESQVKK-ISDLRRMCLEKGVNPWIEVDGGVG 236 (246)
Q Consensus 178 ve~l~~~l~~vD~VLvMsV~PGfgGQ~F~-~~~l~K-I~~lr~l~~~~~~~~~I~VDGGI~ 236 (246)
++.++.+++..+ |.-+.|+.|-.-|||- ++++.= +.+++.-+...+.+|.+.+.|||-
T Consensus 13 i~Av~~~f~~~~-v~~v~v~SgV~~QP~g~eET~~GA~nRA~~A~~~~~aD~~VGiEgGv~ 72 (169)
T PRK03114 13 VGAVEKVWKDAE-ITSVSVPSGVAAQPFSDEETMQGAINRAKRALEEGEADIGIGLEGGVM 72 (169)
T ss_pred HHHHHHHccCcE-EEEEECCCCcCCCCCChHHHHHHHHHHHHHHHhccCCCEEEEEeeeEe
Confidence 355566666554 7778899999999994 665542 344444444446778899999995
No 435
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=67.89 E-value=15 Score=35.22 Aligned_cols=118 Identities=21% Similarity=0.207 Sum_probs=59.6
Q ss_pred HHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEEEccCCcccccHHHHHHHHHHcCCcEEEEEcCCCChH-----H
Q 025927 106 VVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLS-----A 180 (246)
Q Consensus 106 ~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve-----~ 180 (246)
+++.+|+. ++|+|+... ... |- . +-...++..+. -+++..+++.+|++|+|+++.++|.-..+ .
T Consensus 48 ~i~~~~~~-~iP~d~~~i-D~~--~~---~--~~~~f~~d~~~--FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~~~~~~ 116 (441)
T PF01055_consen 48 VIDRYRSN-GIPLDVIWI-DDD--YQ---D--GYGDFTWDPER--FPDPKQMIDELHDQGIKVVLWVHPFVSNDSPDYEN 116 (441)
T ss_dssp HHHHHHHT-T--EEEEEE--GG--GS---B--TTBTT-B-TTT--TTTHHHHHHHHHHTT-EEEEEEESEEETTTTB-HH
T ss_pred HHHHHHHc-CCCccceec-ccc--cc---c--ccccccccccc--ccchHHHHHhHhhCCcEEEEEeecccCCCCCcchh
Confidence 44444543 788888642 221 11 1 11122333332 35789999999999999999999985543 3
Q ss_pred HHHhhhhcceEE--------EEeecCCCCCCc--ccHHHHHHH-HHHHHHHHhcCCCCeEEEeCCCC
Q 025927 181 IECVLDVVDLVL--------IMSVNPGFGGQS--FIESQVKKI-SDLRRMCLEKGVNPWIEVDGGVG 236 (246)
Q Consensus 181 l~~~l~~vD~VL--------vMsV~PGfgGQ~--F~~~~l~KI-~~lr~l~~~~~~~~~I~VDGGI~ 236 (246)
+++. ..-|+.+ +..+-||.++.. +.|++.+=. ++++++....|.+. +..|.|-.
T Consensus 117 ~~~~-~~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg-~w~D~~E~ 181 (441)
T PF01055_consen 117 YDEA-KEKGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDDYGVDG-WWLDFGEP 181 (441)
T ss_dssp HHHH-HHTT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTTST-SE-EEEESTTT
T ss_pred hhhH-hhcCceeecccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhccCCce-EEeecCCc
Confidence 3332 2334432 233333332222 445555544 44566655546653 77888643
No 436
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=67.83 E-value=1e+02 Score=28.49 Aligned_cols=127 Identities=20% Similarity=0.208 Sum_probs=82.1
Q ss_pred ccChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCE--EE
Q 025927 66 SANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADI--VS 143 (246)
Q Consensus 66 ~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~--It 143 (246)
..|+..+.+-++.+.++|+|.+=+==.=|. +.+++++.-+++ ++..+++-... |.
T Consensus 21 ~vD~~a~~~lv~~li~~Gv~gi~~~GttGE---~~~Ls~eEr~~v--------------------~~~~v~~~~grvpvi 77 (299)
T COG0329 21 SVDEEALRRLVEFLIAAGVDGLVVLGTTGE---SPTLTLEERKEV--------------------LEAVVEAVGGRVPVI 77 (299)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECCCCcc---chhcCHHHHHHH--------------------HHHHHHHHCCCCcEE
Confidence 368889999999999999875533222222 234444433322 34444443333 66
Q ss_pred EccCCcccccHHHHHHHHHHcCCcEEEEEcCC---CCh----HHHHHhhhhcceEEEEeecCCCCCCcccHHHHHHHHH
Q 025927 144 VHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPA---TSL----SAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISD 215 (246)
Q Consensus 144 ~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~---Tpv----e~l~~~l~~vD~VLvMsV~PGfgGQ~F~~~~l~KI~~ 215 (246)
.+.=+.++.+..++.++.++.|..+-+++.|. .+- +.+..+.+.+|.=++.==.|+..|..+.++++.++.+
T Consensus 78 aG~g~~~t~eai~lak~a~~~Gad~il~v~PyY~k~~~~gl~~hf~~ia~a~~lPvilYN~P~~tg~~l~~e~i~~la~ 156 (299)
T COG0329 78 AGVGSNSTAEAIELAKHAEKLGADGILVVPPYYNKPSQEGLYAHFKAIAEAVDLPVILYNIPSRTGVDLSPETIARLAE 156 (299)
T ss_pred EecCCCcHHHHHHHHHHHHhcCCCEEEEeCCCCcCCChHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHhc
Confidence 66554445667788888899999999999887 222 2333345567663444455999999999999988775
No 437
>PRK06801 hypothetical protein; Provisional
Probab=67.77 E-value=29 Score=32.18 Aligned_cols=78 Identities=17% Similarity=0.157 Sum_probs=61.9
Q ss_pred hhHHHHHHHHHHcCCCEEEeee--ccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEEEccC
Q 025927 70 AKLGEQVKAVELAGCDWIHVDV--MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCE 147 (246)
Q Consensus 70 ~~l~~~i~~l~~~g~d~lHiDI--MDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It~H~E 147 (246)
...++-.+..++.|+|+|=+=| .-|.|-..-.++++.++.+++.++.|+-.|==.--|+..+.+++++|++-|-+.-|
T Consensus 156 T~pe~a~~f~~~tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~~~~~~PLVlHGGSgi~~e~~~~~i~~Gi~KINv~T~ 235 (286)
T PRK06801 156 TDPQLARDFVDRTGIDALAVAIGNAHGKYKGEPKLDFARLAAIHQQTGLPLVLHGGSGISDADFRRAIELGIHKINFYTG 235 (286)
T ss_pred CCHHHHHHHHHHHCcCEEEeccCCCCCCCCCCCCCCHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHcCCcEEEehhH
Confidence 3445555666688999998855 34555433357888999999988999999998888888899999999999999877
No 438
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=67.73 E-value=34 Score=35.22 Aligned_cols=117 Identities=15% Similarity=0.212 Sum_probs=74.0
Q ss_pred CCCeeEEEeccCccc-------chHHHHhcCCCEEEEccCCc-ccccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhh
Q 025927 115 DLPLDVHLMIVEPEQ-------RVPDFIKAGADIVSVHCEQS-STIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD 186 (246)
Q Consensus 115 ~~plDvHLMV~~P~~-------~i~~~~~agad~It~H~E~~-~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~ 186 (246)
+.|+-|.=|+..+.. .+..+.++|+++|-+=+-.. ..+.+..+-+.+++.|+.+=|+-.-......-...++
T Consensus 24 ~~PI~vQSMt~t~T~D~~atv~Qi~~l~~aGceiVRvtv~~~~~a~~l~~I~~~l~~~G~~iPLVADIHF~~~~A~~a~~ 103 (611)
T PRK02048 24 PNPIRIQSMTNTSTMDTEACVAQAKRIIDAGGEYVRLTTQGVREAENLMNINIGLRSQGYMVPLVADVHFNPKVADVAAQ 103 (611)
T ss_pred CCceEEEecCCCCcccHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhhcCCCCCEEEecCCCcHHHHHHHH
Confidence 468888888877654 45677889999776654321 1223455556666678777666555544443333344
Q ss_pred hcceEEEEeecCCCCCCc---ccHH-------------HHHHHHHHHHHHHhcCCCCeEEEeCC
Q 025927 187 VVDLVLIMSVNPGFGGQS---FIES-------------QVKKISDLRRMCLEKGVNPWIEVDGG 234 (246)
Q Consensus 187 ~vD~VLvMsV~PGfgGQ~---F~~~-------------~l~KI~~lr~l~~~~~~~~~I~VDGG 234 (246)
.+|. .-+|||--|-+ |... .-+|++.+-+...++|....|.|-.|
T Consensus 104 ~v~k---iRINPGN~~~~~k~f~~~~Ytdeey~~el~~i~e~~~~~v~~ak~~~~~iRIGvN~G 164 (611)
T PRK02048 104 YAEK---VRINPGNYVDPGRTFKKLEYTDEEYAQEIQKIRDRFVPFLNICKENHTAIRIGVNHG 164 (611)
T ss_pred hhCC---EEECCCcCCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEecCCc
Confidence 4444 46799954442 4332 24677777888888888888888655
No 439
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=67.71 E-value=12 Score=33.00 Aligned_cols=114 Identities=14% Similarity=0.136 Sum_probs=70.1
Q ss_pred CcccchHHHHhc------CCCEEEEcc-CCccc-ccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhhhcceEEE--Ee
Q 025927 126 EPEQRVPDFIKA------GADIVSVHC-EQSST-IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLI--MS 195 (246)
Q Consensus 126 ~P~~~i~~~~~a------gad~It~H~-E~~~~-~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~~vD~VLv--Ms 195 (246)
.|+..++...+. +...|||=- |.+.. +.+..+++.+|+.|+.+.+-=|-..|.+.++++++.+|.+++ -.
T Consensus 20 t~eel~~~~~~~~~f~~~sggGVt~SGGEPllq~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~~~D~~l~DiK~ 99 (213)
T PRK10076 20 TLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKI 99 (213)
T ss_pred CHHHHHHHHHhhhHhhcCCCCEEEEeCchHHcCHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHhcCEEEEeecc
Confidence 355555544432 456777643 32111 124688999999999999999988999999999999999876 33
Q ss_pred ecCCC----CCCcccHHHHHHHHHHHHHHHhcCCCCe--E-EEeC-CCChhhhhhcc
Q 025927 196 VNPGF----GGQSFIESQVKKISDLRRMCLEKGVNPW--I-EVDG-GVGPKNAYKVP 244 (246)
Q Consensus 196 V~PGf----gGQ~F~~~~l~KI~~lr~l~~~~~~~~~--I-~VDG-GI~~e~i~~l~ 244 (246)
.+|.+ .|.. ++.+++.++.+. +.|.+++ + -|-| .-+.++++.++
T Consensus 100 ~d~~~~~~~tG~~-~~~il~nl~~l~----~~g~~v~iR~~vIPg~nd~~e~i~~ia 151 (213)
T PRK10076 100 MDATQARDVVKMN-LPRVLENLRLLV----SEGVNVIPRLPLIPGFTLSRENMQQAL 151 (213)
T ss_pred CCHHHHHHHHCCC-HHHHHHHHHHHH----hCCCcEEEEEEEECCCCCCHHHHHHHH
Confidence 34421 3433 355555555443 3444443 2 2455 34567776654
No 440
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=67.69 E-value=35 Score=30.33 Aligned_cols=93 Identities=20% Similarity=0.153 Sum_probs=66.1
Q ss_pred hHHHHHHHHHHcCCCEE-Eeeec-cCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEEE----
Q 025927 71 KLGEQVKAVELAGCDWI-HVDVM-DGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSV---- 144 (246)
Q Consensus 71 ~l~~~i~~l~~~g~d~l-HiDIM-DG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It~---- 144 (246)
...+.++++++.|++.+ --|+- ||.- -++..+.++++++.+++|+-+-==+.+++...+.+...|++.+.+
T Consensus 154 ~~~~~~~~~~~~g~~~ii~~~i~~~g~~---~g~d~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al 230 (253)
T PRK02083 154 DAVEWAKEVEELGAGEILLTSMDRDGTK---NGYDLELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIF 230 (253)
T ss_pred CHHHHHHHHHHcCCCEEEEcCCcCCCCC---CCcCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHH
Confidence 45677788899999865 22332 3432 134577889998888899988888888888877666679986654
Q ss_pred ccCCcccccHHHHHHHHHHcCCcEE
Q 025927 145 HCEQSSTIHLHRTLNQIKDLGAKAG 169 (246)
Q Consensus 145 H~E~~~~~~~~~~i~~Ik~~G~k~G 169 (246)
|.. ...+..+++..++.|+.++
T Consensus 231 ~~~---~~~~~~~~~~~~~~~~~~~ 252 (253)
T PRK02083 231 HFG---EITIGELKAYLAEQGIPVR 252 (253)
T ss_pred HcC---CCCHHHHHHHHHHCCCccc
Confidence 644 3457778888888887654
No 441
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=67.57 E-value=23 Score=31.21 Aligned_cols=127 Identities=13% Similarity=0.079 Sum_probs=0.0
Q ss_pred cccChh------hHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEe---------------
Q 025927 65 LSANFA------KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLM--------------- 123 (246)
Q Consensus 65 l~aD~~------~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLM--------------- 123 (246)
+|+++. .+++.++++.+.|.+.+-+ .......++.++++.+..++.+-.|-.
T Consensus 4 ~~~~~~~~~~~~~l~~~l~~~a~~Gf~~VEl-------~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~ 76 (258)
T PRK09997 4 FSANLSMLFGEYDFLARFEKAAQCGFRGVEF-------MFPYDYDIEELKQVLASNKLEHTLHNLPAGDWAAGERGIACI 76 (258)
T ss_pred eeeeeehhccCCCHHHHHHHHHHhCCCEEEE-------cCCCCCCHHHHHHHHHHcCCcEEEEcCCCCccccCcCccccC
Q ss_pred -------ccCcccchHHHHhcCCCEEEEc-------------cCCcccccHHHHHHHHHHcCCcEEEE-Ec----CCCCh
Q 025927 124 -------IVEPEQRVPDFIKAGADIVSVH-------------CEQSSTIHLHRTLNQIKDLGAKAGVV-LN----PATSL 178 (246)
Q Consensus 124 -------V~~P~~~i~~~~~agad~It~H-------------~E~~~~~~~~~~i~~Ik~~G~k~GlA-ln----P~Tpv 178 (246)
.++-.+.++...+.|+.+|.++ .+.. .+.+.++.+..++.|++.|+= +| |...+
T Consensus 77 ~~~~~~~~~~~~~~i~~a~~lga~~i~~~~g~~~~~~~~~~~~~~~-~~~l~~l~~~a~~~Gv~l~lE~~n~~~~~~~~~ 155 (258)
T PRK09997 77 PGREEEFRDGVAAAIRYARALGNKKINCLVGKTPAGFSSEQIHATL-VENLRYAANMLMKEDILLLIEPINHFDIPGFHL 155 (258)
T ss_pred CCcHHHHHHHHHHHHHHHHHhCCCEEEECCCCCCCCCCHHHHHHHH-HHHHHHHHHHHHHcCCEEEEEeCCCcCCCCCcc
Q ss_pred HHHHHhhhhcceE----EEEeecCC
Q 025927 179 SAIECVLDVVDLV----LIMSVNPG 199 (246)
Q Consensus 179 e~l~~~l~~vD~V----LvMsV~PG 199 (246)
...+..+..+|-| +-+..++|
T Consensus 156 ~~~~~~~~ll~~v~~~~v~l~~D~~ 180 (258)
T PRK09997 156 TGTRQALKLIDDVGCCNLKIQYDIY 180 (258)
T ss_pred CCHHHHHHHHHHhCCCCEEEEeEHH
No 442
>PRK05826 pyruvate kinase; Provisional
Probab=67.43 E-value=39 Score=33.55 Aligned_cols=96 Identities=14% Similarity=0.192 Sum_probs=66.3
Q ss_pred ccCcccchHHHHhcCCCEEEEccCCcccccHHHHHHHHHHcCC-cEEEEEcCCCCh--HHHHHhhhhcceEEE----Eee
Q 025927 124 IVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGA-KAGVVLNPATSL--SAIECVLDVVDLVLI----MSV 196 (246)
Q Consensus 124 V~~P~~~i~~~~~agad~It~H~E~~~~~~~~~~i~~Ik~~G~-k~GlAlnP~Tpv--e~l~~~l~~vD~VLv----MsV 196 (246)
.++=...++...+.|+|+|.+..=. +.+++.++-+++.+.|. ...+...-+|+- +.+++++..+|.|+| +++
T Consensus 172 te~D~~~i~~ald~g~d~I~~sfV~-saedv~~l~~~l~~~~~~~~~iiakIEt~eav~nldeI~~~~DgImIgrgDLg~ 250 (465)
T PRK05826 172 TEKDKADIKFAAEQGVDYIAVSFVR-SAEDVEEARRLLREAGCPHAKIIAKIERAEAVDNIDEIIEASDGIMVARGDLGV 250 (465)
T ss_pred ChhhHHHHHHHHHCCCCEEEECCCC-CHHHHHHHHHHHHHcCCcCceEEEEEcCHHHHHhHHHHHHHcCEEEECcchhhh
Confidence 3333346777789999999887432 24677888888888887 788887777654 889999999999987 555
Q ss_pred cCCCCCCcccHHHHHHHHHHHHHHHhcCCC
Q 025927 197 NPGFGGQSFIESQVKKISDLRRMCLEKGVN 226 (246)
Q Consensus 197 ~PGfgGQ~F~~~~l~KI~~lr~l~~~~~~~ 226 (246)
+=| .|++..-.+++-+.+.+.|..
T Consensus 251 elg------~~~v~~~qk~Ii~~c~~~gKp 274 (465)
T PRK05826 251 EIP------DEEVPGLQKKIIRKAREAGKP 274 (465)
T ss_pred hcC------cHhHHHHHHHHHHHHHHcCCC
Confidence 544 344444445555555555543
No 443
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=67.40 E-value=84 Score=29.80 Aligned_cols=103 Identities=14% Similarity=0.163 Sum_probs=55.7
Q ss_pred cchHHHHhcC--CCEEEEccCCcccccHHHHHHHHHHcCCcEEEEEcCC-CChHHHHHhhhh-cceEEEEeecCCCC---
Q 025927 129 QRVPDFIKAG--ADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPA-TSLSAIECVLDV-VDLVLIMSVNPGFG--- 201 (246)
Q Consensus 129 ~~i~~~~~ag--ad~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~-Tpve~l~~~l~~-vD~VLvMsV~PGfg--- 201 (246)
..+..++++| +|+|.+-.-.--.....+.+++||+.--.+- .+..+ .+.+..+.+++. +|.|. .++=||..
T Consensus 97 ~r~~~lv~a~~~~d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~-vi~GnV~t~e~a~~l~~aGad~I~-V~~G~G~~~~t 174 (321)
T TIGR01306 97 EFVTQLAEEALTPEYITIDIAHGHSNSVINMIKHIKTHLPDSF-VIAGNVGTPEAVRELENAGADATK-VGIGPGKVCIT 174 (321)
T ss_pred HHHHHHHhcCCCCCEEEEeCccCchHHHHHHHHHHHHhCCCCE-EEEecCCCHHHHHHHHHcCcCEEE-ECCCCCccccc
Confidence 4677888888 7998875421111335567788886542221 23332 355666666654 78766 34434431
Q ss_pred ----CCcccHHHHHHHHHHHHHHHhcCCCCeEEEeCCCChh
Q 025927 202 ----GQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPK 238 (246)
Q Consensus 202 ----GQ~F~~~~l~KI~~lr~l~~~~~~~~~I~VDGGI~~e 238 (246)
|..+-.-.+.-|.+.++.. +..|..||||+..
T Consensus 175 r~~~g~g~~~~~l~ai~ev~~a~-----~~pVIadGGIr~~ 210 (321)
T TIGR01306 175 KIKTGFGTGGWQLAALRWCAKAA-----RKPIIADGGIRTH 210 (321)
T ss_pred eeeeccCCCchHHHHHHHHHHhc-----CCeEEEECCcCcH
Confidence 1222211233444444432 3568899999754
No 444
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=67.27 E-value=95 Score=30.51 Aligned_cols=10 Identities=10% Similarity=0.182 Sum_probs=4.8
Q ss_pred EEeccCcccc
Q 025927 121 HLMIVEPEQR 130 (246)
Q Consensus 121 HLMV~~P~~~ 130 (246)
.+.+.+|..|
T Consensus 159 qiF~~npr~w 168 (413)
T PTZ00372 159 ALFLKNQRTW 168 (413)
T ss_pred EEEcCCCccC
Confidence 4445555444
No 445
>cd06811 PLPDE_III_yhfX_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme yhfX. This subfamily is composed of the uncharacterized protein yhfX from Escherichia coli K-12 and similar bacterial proteins. These proteins are homologous to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.
Probab=67.19 E-value=1.2e+02 Score=28.95 Aligned_cols=141 Identities=16% Similarity=0.211 Sum_probs=74.0
Q ss_pred HHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCe-eEEEeccCcccchHHHHhcCCCEEEEccCCcccc
Q 025927 74 EQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL-DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTI 152 (246)
Q Consensus 74 ~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~pl-DvHLMV~~P~~~i~~~~~agad~It~H~E~~~~~ 152 (246)
+-++.+.+.|++ .+++.+ +.....+|+. +++. ++-.++..|...++..++.+...+++.-. +
T Consensus 68 ~ia~~l~~~G~~--g~~vas----------~~Ea~~lr~a-Gi~~~~I~~l~~~~~~el~~~v~~~~~~i~V~s~----~ 130 (382)
T cd06811 68 FLARALLEAGIP--GAVAVD----------FKEARALHEA-GLPLGHVGHLVQIPRHQVPAVLAMRPEVITVYSL----E 130 (382)
T ss_pred HHHHHHHHcCCC--eEeEec----------HHHHHHHHHc-CCCHHhEEEccCCCHHHHHHHHHcCCCEEEECCH----H
Confidence 344555566655 334332 2234445542 3332 33233445667788888877666666522 3
Q ss_pred cHHHHHHHHHHcCCc--EEEEEcCCCC-----------hHHHHHhhh------hcceEEEEeecCCC--CC----CcccH
Q 025927 153 HLHRTLNQIKDLGAK--AGVVLNPATS-----------LSAIECVLD------VVDLVLIMSVNPGF--GG----QSFIE 207 (246)
Q Consensus 153 ~~~~~i~~Ik~~G~k--~GlAlnP~Tp-----------ve~l~~~l~------~vD~VLvMsV~PGf--gG----Q~F~~ 207 (246)
.+.++-+..++.|.+ +-|-+||+.. .+++..++. .+.++=+ +.-|+. .. ..+.+
T Consensus 131 ~l~~L~~~A~~~g~~~~V~LrVdtg~~ri~~g~~~G~~~~e~~~~~~~i~~l~~l~l~Gi-thf~~~~~d~~~~~~~~~~ 209 (382)
T cd06811 131 KAREISDAAVELGRVQDVLLRVYGDEDTLYPGQEGGFPLEELPAVLAAIKALPGIRIAGL-TSFPCFLYDEEQGDIAPTP 209 (382)
T ss_pred HHHHHHHHHHHcCCceEEEEEEECCCCccccCccceecHHHHHHHHHHHHcCCCcEEEeE-cccchhhcccCcccccHHH
Confidence 455555555667755 4555555432 344444432 3444444 332443 11 12333
Q ss_pred HHHHHHHHHHHHHHhcCCCCeEEEeCC
Q 025927 208 SQVKKISDLRRMCLEKGVNPWIEVDGG 234 (246)
Q Consensus 208 ~~l~KI~~lr~l~~~~~~~~~I~VDGG 234 (246)
.++++.++++.+++.+..+. .+++|
T Consensus 210 -~~~~l~~~~~~l~~~g~~~~-~is~G 234 (382)
T cd06811 210 -NLFTLLKAKELLEKRGIEIL-QLNAP 234 (382)
T ss_pred -HHHHHHHHHHHHHHCCCCCe-EEccC
Confidence 67888888888888776543 46654
No 446
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=67.11 E-value=97 Score=27.90 Aligned_cols=136 Identities=12% Similarity=0.086 Sum_probs=83.0
Q ss_pred CCcEEeeeecccChhhHHHHHHHHHHcCCCEEEeee-------ccCcccCCCCCCHHH----HhhcccCCCCCeeEEEec
Q 025927 56 SDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDV-------MDGRFVPNITIGPLV----VDALRPVTDLPLDVHLMI 124 (246)
Q Consensus 56 ~~~~IsPSIl~aD~~~l~~~i~~l~~~g~d~lHiDI-------MDG~FVpN~tfgp~~----I~~ir~~t~~plDvHLMV 124 (246)
....+..|+-..++..+.+-.+.+.+ ++|++=+.. ..+..-..+.-.|+. ++++++ .+.|+-|=+=.
T Consensus 66 ~~~~vivnv~~~~~ee~~~~a~~v~~-~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~-~~~PVsvKiR~ 143 (231)
T TIGR00736 66 SRALVSVNVRFVDLEEAYDVLLTIAE-HADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKE-LNKPIFVKIRG 143 (231)
T ss_pred hcCCEEEEEecCCHHHHHHHHHHHhc-CCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHc-CCCcEEEEeCC
Confidence 35679999999999999888888866 677665542 211121123334444 444453 36788877765
Q ss_pred cCc----ccchHHHHhcCCCEEEEccCCcccc-cHHHHHHHHHHcC-CcEEEEEcCCCChHHHHHhhhh-cceEEE
Q 025927 125 VEP----EQRVPDFIKAGADIVSVHCEQSSTI-HLHRTLNQIKDLG-AKAGVVLNPATSLSAIECVLDV-VDLVLI 193 (246)
Q Consensus 125 ~~P----~~~i~~~~~agad~It~H~E~~~~~-~~~~~i~~Ik~~G-~k~GlAlnP~Tpve~l~~~l~~-vD~VLv 193 (246)
..+ ..+.+.+.++|+|.|++|.-..... --.+.|..+++.= -.+=++-+-=++.++..+++.. +|.|++
T Consensus 144 ~~~~~~~~~~a~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~~GAd~Vmv 219 (231)
T TIGR00736 144 NCIPLDELIDALNLVDDGFDGIHVDAMYPGKPYADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLKAGADFVSV 219 (231)
T ss_pred CCCcchHHHHHHHHHHcCCCEEEEeeCCCCCchhhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHHhCCCeEEE
Confidence 322 2455667889999999995421110 1246777787752 1233333333777777777765 777765
No 447
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=67.05 E-value=29 Score=34.47 Aligned_cols=133 Identities=13% Similarity=0.167 Sum_probs=77.1
Q ss_pred ccChhhHHHHHHHHHHcCCCEEEe-eeccCccc---CCC-CCCHHHHhhcccCCCCCeeEEEeccCcc----cchHHHHh
Q 025927 66 SANFAKLGEQVKAVELAGCDWIHV-DVMDGRFV---PNI-TIGPLVVDALRPVTDLPLDVHLMIVEPE----QRVPDFIK 136 (246)
Q Consensus 66 ~aD~~~l~~~i~~l~~~g~d~lHi-DIMDG~FV---pN~-tfgp~~I~~ir~~t~~plDvHLMV~~P~----~~i~~~~~ 136 (246)
+-.+.++-+|++.+.+.|+..+.+ |.-=+.|- .+- .| .+.++.+..+.++ -.+.+...+|. .+++.+.+
T Consensus 185 sr~~e~Vv~Ei~~l~~~g~~ei~l~d~n~~~yG~d~~~~~~l-~~Ll~~l~~i~~l-~~ir~~~~~p~~~~~ell~~m~~ 262 (502)
T PRK14326 185 DRRPGDILAEVQALVDEGVLEVTLLGQNVNAYGVSFGDRGAF-SKLLRACGEIDGL-ERVRFTSPHPAEFTDDVIEAMAE 262 (502)
T ss_pred cCCHHHHHHHHHHHHHCCCceEEEEeecccccccCCCCHHHH-HHHHHHHHhcCCc-cEEEEeccChhhCCHHHHHHHHh
Confidence 556688889999999999887765 21111121 111 11 1234444433222 13566666665 46667777
Q ss_pred cC--CCEEEEccCCcc------------cccHHHHHHHHHHc--CCcEEE--EEc-CCCChHHHHHhhhh-----cceE-
Q 025927 137 AG--ADIVSVHCEQSS------------TIHLHRTLNQIKDL--GAKAGV--VLN-PATSLSAIECVLDV-----VDLV- 191 (246)
Q Consensus 137 ag--ad~It~H~E~~~------------~~~~~~~i~~Ik~~--G~k~Gl--Aln-P~Tpve~l~~~l~~-----vD~V- 191 (246)
+| +.++.+-+|+.+ ..+..+.++.+|+. |+.++. .+. |+-..++++..++. +|.+
T Consensus 263 ~g~~~~~l~lglQSgsd~iLk~m~R~~t~~~~~~~v~~lr~~~~~i~i~~~~IvGfPgET~edf~~Tl~~i~~~~~~~~~ 342 (502)
T PRK14326 263 TPNVCPQLHMPLQSGSDRVLRAMRRSYRSERFLGILEKVRAAMPDAAITTDIIVGFPGETEEDFQATLDVVREARFSSAF 342 (502)
T ss_pred cCCcCCcEEeccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEEEEEECCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 77 788888889742 12356778888885 555443 333 66666666554443 4533
Q ss_pred -EEEeecCCC
Q 025927 192 -LIMSVNPGF 200 (246)
Q Consensus 192 -LvMsV~PGf 200 (246)
...+..||-
T Consensus 343 ~f~~sp~pGT 352 (502)
T PRK14326 343 TFQYSKRPGT 352 (502)
T ss_pred EEeecCCCCC
Confidence 346777884
No 448
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=67.02 E-value=13 Score=34.61 Aligned_cols=104 Identities=16% Similarity=0.193 Sum_probs=64.9
Q ss_pred HHHHHHH---HHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEec--cCcccchHHHHhcCCCEEEEcc
Q 025927 72 LGEQVKA---VELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMI--VEPEQRVPDFIKAGADIVSVHC 146 (246)
Q Consensus 72 l~~~i~~---l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV--~~P~~~i~~~~~agad~It~H~ 146 (246)
+++.|++ ..++|+|.+ |+|... .++.++.+.+..+.|+-+-++. ..|..-++.|.+.|.++|++..
T Consensus 165 ~deAI~Ra~aY~eAGAD~i--------fi~~~~-~~~~i~~~~~~~~~Pl~~n~~~~~~~p~~s~~~L~~lGv~~v~~~~ 235 (292)
T PRK11320 165 LDAAIERAQAYVEAGADMI--------FPEAMT-ELEMYRRFADAVKVPILANITEFGATPLFTTEELASAGVAMVLYPL 235 (292)
T ss_pred HHHHHHHHHHHHHcCCCEE--------EecCCC-CHHHHHHHHHhcCCCEEEEeccCCCCCCCCHHHHHHcCCcEEEECh
Confidence 5555544 457898765 666543 4777887776557787554442 2355568899999999999985
Q ss_pred CCc--ccccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhh
Q 025927 147 EQS--STIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVL 185 (246)
Q Consensus 147 E~~--~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l 185 (246)
-.. ....+..++..+++.|...++. +.-.+++.+.+++
T Consensus 236 ~~~~aa~~a~~~~~~~l~~~g~~~~~~-~~~~~~~~~~~~~ 275 (292)
T PRK11320 236 SAFRAMNKAAENVYEAIRRDGTQKAVV-DTMQTREELYEYL 275 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcccch-hccCCHHHHHHhc
Confidence 421 1223556777888888755522 2224555555543
No 449
>cd08206 RuBisCO_large_I_II_III Ribulose bisphosphate carboxylase large chain, Form I,II,III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubico-like proteins (RLP), are missing critical active site residues.
Probab=66.93 E-value=8.3 Score=37.75 Aligned_cols=118 Identities=15% Similarity=0.093 Sum_probs=79.8
Q ss_pred cceeccccCCCCCCceeccccceeeeeeccccccCCCCCcEEeeeecccChhhHHHHHHHHHHcCCCEEEeeeccCcccC
Q 025927 19 GFMLQKTNLNQPSSLSFTRRRIQTIVKASARVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVP 98 (246)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IsPSIl~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVp 98 (246)
++.-.+-++..++- ..-+.|++.+..|-.|..+-......-+|-|-..+...+.+..+.+.+.|++.+.+|++
T Consensus 163 D~IKDDE~l~~q~~-~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiT~~~~~em~~ra~~~~~~G~~~~mv~~~------ 235 (414)
T cd08206 163 DFVKDDENQNSQPF-MRFEDRILFVAEAMDKAEAETGEAKGHYLNITADTPEEMIKRAEFAKELGSVIVMVDGV------ 235 (414)
T ss_pred cccccCccCCCCCC-CcHHHHHHHHHHHHHHHHHhhCCcceEEeccCCCcHHHHHHHHHHHHHhCCcEEEEeee------
Confidence 55555555544443 33345566666666555544444666777776444999999999999999999999975
Q ss_pred CCCCCHHHHhhcccC---CCCCeeEEE-----eccCccc------chHHHHhcCCCEEEEc
Q 025927 99 NITIGPLVVDALRPV---TDLPLDVHL-----MIVEPEQ------RVPDFIKAGADIVSVH 145 (246)
Q Consensus 99 N~tfgp~~I~~ir~~---t~~plDvHL-----MV~~P~~------~i~~~~~agad~It~H 145 (246)
+.|...+..|++. .++|+..|= ++.+|.. |-+.+.-+|+|.+.+.
T Consensus 236 --~~G~~~l~~l~~~~~~~~l~ih~HrA~~ga~~~~~~~Gis~~vl~kl~RLaGaD~ih~~ 294 (414)
T cd08206 236 --TAGWTAIQSARRWCPDNGLALHAHRAGHAAFTRQKNHGISMRVLAKLARLIGVDHIHTG 294 (414)
T ss_pred --cccHHHHHHHHHhccccCeEEEEccccceecccCCCCcCcHHHHHHHHHHcCCCccccC
Confidence 4566678888873 468999884 4555552 2333355899998876
No 450
>CHL00040 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
Probab=66.70 E-value=4.7 Score=40.15 Aligned_cols=118 Identities=13% Similarity=0.069 Sum_probs=77.9
Q ss_pred cceeccccCCCCCCceeccccceeeeeeccccccCCCCCcEEeeeecccChhhHHHHHHHHHHcCCCEEEeeeccCcccC
Q 025927 19 GFMLQKTNLNQPSSLSFTRRRIQTIVKASARVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVP 98 (246)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IsPSIl~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVp 98 (246)
++.--+-++..++-.. -+.|++.+..|-.|..+-.......+.-|-+.+...+.+..+.+.+.|++.+.+|++=
T Consensus 198 D~IKDDE~l~dq~~~p-~~eRv~~~~~a~~~a~~eTG~~~~y~~NiTa~~~~em~~ra~~a~e~G~~~~mv~~~~----- 271 (475)
T CHL00040 198 DFTKDDENVNSQPFMR-WRDRFLFCAEAIYKAQAETGEIKGHYLNATAGTCEEMYKRAVFARELGVPIVMHDYLT----- 271 (475)
T ss_pred cccccCccCCCCCCCC-HHHHHHHHHHHHHHHHHhhCCcceeeeccCCCCHHHHHHHHHHHHHcCCceEEEeccc-----
Confidence 5555565664444333 3445666666655555444434455776666799999999999999999999998753
Q ss_pred CCCCCHHHHhhccc---CCCCCeeEE-----EeccCcc------cchHHHHhcCCCEEEEc
Q 025927 99 NITIGPLVVDALRP---VTDLPLDVH-----LMIVEPE------QRVPDFIKAGADIVSVH 145 (246)
Q Consensus 99 N~tfgp~~I~~ir~---~t~~plDvH-----LMV~~P~------~~i~~~~~agad~It~H 145 (246)
.|...+..|++ ..++|+..| -++.+|. -+-+.+.-+|+|.+.+.
T Consensus 272 ---~G~~al~~l~~~~~~~~l~IhaHrA~~ga~~r~~~~Gis~~vl~KL~RLaGaD~ih~~ 329 (475)
T CHL00040 272 ---GGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQKNHGIHFRVLAKALRMSGGDHIHAG 329 (475)
T ss_pred ---cccchHHHHHHHhhhcCceEEeccccccccccCccCCCcHHHHHHHHHHcCCCccccC
Confidence 34446777764 568999999 4555554 23333455899998444
No 451
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=66.69 E-value=58 Score=28.84 Aligned_cols=147 Identities=12% Similarity=0.178 Sum_probs=82.6
Q ss_pred EeeeecccChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcC-
Q 025927 60 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAG- 138 (246)
Q Consensus 60 IsPSIl~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~ag- 138 (246)
+..=+|.. +.++.++.+.++|+|++.+ |+--+-.-=...++.+|+. +..+=+=+....|...++.+.+.+
T Consensus 68 lDvHLm~~---~p~~~i~~~~~~Gad~itv-----H~ea~~~~~~~~l~~ik~~-G~~~gval~p~t~~e~l~~~l~~~~ 138 (228)
T PTZ00170 68 LDCHLMVS---NPEKWVDDFAKAGASQFTF-----HIEATEDDPKAVARKIREA-GMKVGVAIKPKTPVEVLFPLIDTDL 138 (228)
T ss_pred EEEEECCC---CHHHHHHHHHHcCCCEEEE-----eccCCchHHHHHHHHHHHC-CCeEEEEECCCCCHHHHHHHHccch
Confidence 44445534 4556678888999999877 3322111013567777764 444444455555666666665333
Q ss_pred CCEE---EEccCCccc---ccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhhh-cceEEEEeecCCCCCCcccHHHHH
Q 025927 139 ADIV---SVHCEQSST---IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVK 211 (246)
Q Consensus 139 ad~I---t~H~E~~~~---~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~~-vD~VLvMsV~PGfgGQ~F~~~~l~ 211 (246)
+|+| ++|+=.... .....-++++|+.--+.-+++.++-..+.+..+... +|.+.+ . -+=|+... -.+
T Consensus 139 vD~Vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~I~VdGGI~~~ti~~~~~aGad~iVv-G-saI~~a~d----~~~ 212 (228)
T PTZ00170 139 VDMVLVMTVEPGFGGQSFMHDMMPKVRELRKRYPHLNIQVDGGINLETIDIAADAGANVIVA-G-SSIFKAKD----RKQ 212 (228)
T ss_pred hhhHHhhhcccCCCCcEecHHHHHHHHHHHHhcccCeEEECCCCCHHHHHHHHHcCCCEEEE-c-hHHhCCCC----HHH
Confidence 6766 777432111 112234555666533467999999999999888764 787654 2 12343322 233
Q ss_pred HHHHHHHHHH
Q 025927 212 KISDLRRMCL 221 (246)
Q Consensus 212 KI~~lr~l~~ 221 (246)
.++++++.+.
T Consensus 213 ~~~~i~~~~~ 222 (228)
T PTZ00170 213 AIELLRESVQ 222 (228)
T ss_pred HHHHHHHHHH
Confidence 4455555544
No 452
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=66.69 E-value=15 Score=34.15 Aligned_cols=104 Identities=18% Similarity=0.232 Sum_probs=64.8
Q ss_pred HHHHHHHH---HHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEec--cCcccchHHHHhcCCCEEEEcc
Q 025927 72 LGEQVKAV---ELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMI--VEPEQRVPDFIKAGADIVSVHC 146 (246)
Q Consensus 72 l~~~i~~l---~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV--~~P~~~i~~~~~agad~It~H~ 146 (246)
+++.|++. .++|+|.+ |+|... ..+.++.+.+..+.|+-+-++. ..|..-+++|.+.|.++|++..
T Consensus 160 ~deAI~Ra~ay~~AGAD~v--------fi~g~~-~~e~i~~~~~~i~~Pl~~n~~~~~~~p~~s~~eL~~lGv~~v~~~~ 230 (285)
T TIGR02317 160 LDAAIERAKAYVEAGADMI--------FPEALT-SLEEFRQFAKAVKVPLLANMTEFGKTPLFTADELREAGYKMVIYPV 230 (285)
T ss_pred HHHHHHHHHHHHHcCCCEE--------EeCCCC-CHHHHHHHHHhcCCCEEEEeccCCCCCCCCHHHHHHcCCcEEEEch
Confidence 55666554 47788765 666544 5777888876556777554442 2355668999999999999985
Q ss_pred CCc--ccccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhh
Q 025927 147 EQS--STIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVL 185 (246)
Q Consensus 147 E~~--~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l 185 (246)
-.. ...-+.+.+..+++.|.-.+ .-+--.+++++.+++
T Consensus 231 ~~~~aa~~a~~~~~~~l~~~g~~~~-~~~~~~~~~e~~~~~ 270 (285)
T TIGR02317 231 TAFRAMNKAAEAVYNEIKEHGTQKG-SLDDMQTRKELYELI 270 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccc-ccccCCCHHHHHHHc
Confidence 431 12235567777887776545 112224555555543
No 453
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=66.58 E-value=6.2 Score=37.25 Aligned_cols=105 Identities=23% Similarity=0.207 Sum_probs=56.7
Q ss_pred cChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCC--CCeeEEEeccCcccchH--HHHhcCCCEE
Q 025927 67 ANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTD--LPLDVHLMIVEPEQRVP--DFIKAGADIV 142 (246)
Q Consensus 67 aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~--~plDvHLMV~~P~~~i~--~~~~agad~I 142 (246)
.++..+.+.++.++++|++.+-+==+=|...|+-. .+.++.+|+..+ +++.+|.=-..=..... ..+++|+++|
T Consensus 140 ~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v--~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aGa~~i 217 (333)
T TIGR03217 140 TPPEKLAEQAKLMESYGADCVYIVDSAGAMLPDDV--RDRVRALKAVLKPETQVGFHAHHNLSLAVANSIAAIEAGATRI 217 (333)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEccCCCCCCHHHH--HHHHHHHHHhCCCCceEEEEeCCCCchHHHHHHHHHHhCCCEE
Confidence 45667778888888888887643222233333211 123445565433 67777765443333222 2356888884
Q ss_pred EEccCC----cccccHHHHHHHHHHcCCcEEEEEc
Q 025927 143 SVHCEQ----SSTIHLHRTLNQIKDLGAKAGVVLN 173 (246)
Q Consensus 143 t~H~E~----~~~~~~~~~i~~Ik~~G~k~GlAln 173 (246)
--=+-. ......+.++..+++.|...|+=+.
T Consensus 218 D~Sl~G~G~~aGN~~~E~lv~~l~~~g~~tgidl~ 252 (333)
T TIGR03217 218 DASLRGLGAGAGNAPLEVFVAVLDRLGWNTGCDLF 252 (333)
T ss_pred EeecccccccccCccHHHHHHHHHhcCCCCCcCHH
Confidence 433221 1233466677777877776654433
No 454
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=66.48 E-value=16 Score=33.52 Aligned_cols=59 Identities=27% Similarity=0.352 Sum_probs=39.7
Q ss_pred HHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCC--CCCeeEEEeccCcccchHHHHhcCCCEEEE
Q 025927 74 EQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVT--DLPLDVHLMIVEPEQRVPDFIKAGADIVSV 144 (246)
Q Consensus 74 ~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t--~~plDvHLMV~~P~~~i~~~~~agad~It~ 144 (246)
+|+++..++|+|++-+|=| +|+.++++.+.. ++|+.+= ==-++++ ++.++++|+|.|++
T Consensus 193 eea~~A~~~gaDyI~ld~~----------~~e~l~~~~~~~~~~ipi~Ai-GGI~~~n-i~~~a~~Gvd~Iav 253 (268)
T cd01572 193 EQLKEALEAGADIIMLDNM----------SPEELREAVALLKGRVLLEAS-GGITLEN-IRAYAETGVDYISV 253 (268)
T ss_pred HHHHHHHHcCCCEEEECCc----------CHHHHHHHHHHcCCCCcEEEE-CCCCHHH-HHHHHHcCCCEEEE
Confidence 5666677899999999843 478888876643 2454431 1114443 77889999998876
No 455
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=66.47 E-value=86 Score=28.05 Aligned_cols=121 Identities=19% Similarity=0.165 Sum_probs=0.0
Q ss_pred cChhhHHHHHHHHHHcCCCEEEe-eec----cCcccCCCCCCHHHHhhc-------ccC-CCCCeeEE--------Eecc
Q 025927 67 ANFAKLGEQVKAVELAGCDWIHV-DVM----DGRFVPNITIGPLVVDAL-------RPV-TDLPLDVH--------LMIV 125 (246)
Q Consensus 67 aD~~~l~~~i~~l~~~g~d~lHi-DIM----DG~FVpN~tfgp~~I~~i-------r~~-t~~plDvH--------LMV~ 125 (246)
.|..+..+.++++.++|+.-+|+ |-. =||+-..-.+.++.-.+. ++- .++++-+= -=++
T Consensus 81 g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~ 160 (243)
T cd00377 81 GNALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLD 160 (243)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHH
Q ss_pred CcccchHHHHhcCCCEEEEccCCcccccHHHHHHHHHHcCCcEEEEEcCCC---ChHHHHHhhhhcceEEE
Q 025927 126 EPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPAT---SLSAIECVLDVVDLVLI 193 (246)
Q Consensus 126 ~P~~~i~~~~~agad~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~T---pve~l~~~l~~vD~VLv 193 (246)
+-.+..+.|.++|||.+.+| ...+...+-+..++.+..+-+-..|+. +++++..+ -+.+|.+
T Consensus 161 eai~Ra~ay~~AGAD~v~v~----~~~~~~~~~~~~~~~~~Pl~~~~~~~~~~~~~~~l~~l--G~~~v~~ 225 (243)
T cd00377 161 EAIERAKAYAEAGADGIFVE----GLKDPEEIRAFAEAPDVPLNVNMTPGGNLLTVAELAEL--GVRRVSY 225 (243)
T ss_pred HHHHHHHHHHHcCCCEEEeC----CCCCHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHC--CCeEEEE
No 456
>PRK14567 triosephosphate isomerase; Provisional
Probab=66.42 E-value=97 Score=28.40 Aligned_cols=114 Identities=18% Similarity=0.249 Sum_probs=66.3
Q ss_pred hHHHHhcCCCEEEE-ccCCc-----ccccHHHHHHHHHHcCCcEEEEEcCCCCh------------HHHHHhhhhcce--
Q 025927 131 VPDFIKAGADIVSV-HCEQS-----STIHLHRTLNQIKDLGAKAGVVLNPATSL------------SAIECVLDVVDL-- 190 (246)
Q Consensus 131 i~~~~~agad~It~-H~E~~-----~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpv------------e~l~~~l~~vD~-- 190 (246)
.+.+.+.|++++.+ |.|-= +.+.+.+-++...++|+++=+.+.- |.- ..++..++.++.
T Consensus 78 ~~mLkd~G~~yviiGHSERR~~f~Etd~~v~~Kv~~al~~gl~pI~CiGE-t~eere~g~~~~vv~~Ql~~~l~~i~~~~ 156 (253)
T PRK14567 78 ARMLEDIGCDYLLIGHSERRSLFAESDEDVFKKLNKIIDTTITPVVCIGE-SLDDRQSGKLKQVLATQLSLILENLSVEQ 156 (253)
T ss_pred HHHHHHcCCCEEEECcccccCccCCCHHHHHHHHHHHHHCCCEEEEEcCC-cHHHHHcCCHHHHHHHHHHHHHccCCHHH
Confidence 45678888887664 44420 1233445566677899998777763 221 123334433332
Q ss_pred --EEEEeecCCC---CCCcccHHHHHHH-HHHHHHHHhc----CCCCeEEEeCCCChhhhhhccc
Q 025927 191 --VLIMSVNPGF---GGQSFIESQVKKI-SDLRRMCLEK----GVNPWIEVDGGVGPKNAYKVPN 245 (246)
Q Consensus 191 --VLvMsV~PGf---gGQ~F~~~~l~KI-~~lr~l~~~~----~~~~~I~VDGGI~~e~i~~l~~ 245 (246)
=++..-||=| .|+.=-|+-.+++ +.+|+++.+. .-+..|.-=|+|+.+|+.++.+
T Consensus 157 ~~~ivIAYEPvWAIGTG~~as~e~i~~~~~~IR~~l~~~~~~~a~~v~IlYGGSV~~~N~~~l~~ 221 (253)
T PRK14567 157 LAKVVIAYEPVWAIGTGVVASLEQIQETHQFIRSLLAKVDERLAKNIKIVYGGSLKAENAKDILS 221 (253)
T ss_pred hCCEEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHhhcccccccceEEEcCcCCHHHHHHHHc
Confidence 2678889943 4665444444333 3334444321 2246788999999999988754
No 457
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=66.41 E-value=11 Score=33.84 Aligned_cols=61 Identities=15% Similarity=0.278 Sum_probs=43.3
Q ss_pred CCChHHHHHhhh-hcceEEEEeecCCCCCCcccHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCh-hhhhhcc
Q 025927 175 ATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP-KNAYKVP 244 (246)
Q Consensus 175 ~Tpve~l~~~l~-~vD~VLvMsV~PGfgGQ~F~~~~l~KI~~lr~l~~~~~~~~~I~VDGGI~~-e~i~~l~ 244 (246)
+.|++..+.|-+ -+|.+.+.=.+.-+.|+.-+.+++++|.+. . ..++|||||+. +.++.+.
T Consensus 30 ~dP~~~A~~~~~~ga~~lhivDLd~a~~g~~~n~~~i~~i~~~---~------~~v~vGGGIrs~e~~~~~l 92 (241)
T PRK14114 30 KDPAELVEKLIEEGFTLIHVVDLSKAIENSVENLPVLEKLSEF---A------EHIQIGGGIRSLDYAEKLR 92 (241)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCcccCCcchHHHHHHHHhh---c------CcEEEecCCCCHHHHHHHH
Confidence 467777766655 378888888888777887777777666542 1 25999999984 6666554
No 458
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=66.40 E-value=47 Score=30.85 Aligned_cols=24 Identities=21% Similarity=0.392 Sum_probs=20.9
Q ss_pred cChhhHHHHHHHHHHcCCCEEEee
Q 025927 67 ANFAKLGEQVKAVELAGCDWIHVD 90 (246)
Q Consensus 67 aD~~~l~~~i~~l~~~g~d~lHiD 90 (246)
.+..+..+.+++++++|+.-+|+.
T Consensus 85 G~~~~v~~tv~~~~~aG~agi~IE 108 (285)
T TIGR02317 85 GEAFNVARTVREMEDAGAAAVHIE 108 (285)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEe
Confidence 346689999999999999999984
No 459
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=66.36 E-value=19 Score=33.26 Aligned_cols=75 Identities=15% Similarity=0.120 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHcCCCEEEeeec--cCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEEEccC
Q 025927 71 KLGEQVKAVELAGCDWIHVDVM--DGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCE 147 (246)
Q Consensus 71 ~l~~~i~~l~~~g~d~lHiDIM--DG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It~H~E 147 (246)
...+-++.++++|+|++++.-. ++.|-. ....+.++.+++..++|+-+===+.+|+...+.+...|+|.|.+=--
T Consensus 148 ~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~--~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~VmigR~ 224 (319)
T TIGR00737 148 NAVEAARIAEDAGAQAVTLHGRTRAQGYSG--EANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVMIGRG 224 (319)
T ss_pred hHHHHHHHHHHhCCCEEEEEcccccccCCC--chhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEEEEChh
Confidence 4556778899999999998532 122211 12356777888877777766556678888776666789999988433
No 460
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=66.27 E-value=1.1e+02 Score=28.27 Aligned_cols=126 Identities=19% Similarity=0.190 Sum_probs=63.3
Q ss_pred ccChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhc--CCCEEE
Q 025927 66 SANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKA--GADIVS 143 (246)
Q Consensus 66 ~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~a--gad~It 143 (246)
+.|+..+++.++.+.+.|++-+=+ =|+.-...++..+.-+++ ++..++. |---|.
T Consensus 25 ~iD~~~l~~lv~~li~~Gv~Gi~v---~GstGE~~~Lt~eEr~~v--------------------~~~~~~~~~grvpvi 81 (309)
T cd00952 25 TVDLDETARLVERLIAAGVDGILT---MGTFGECATLTWEEKQAF--------------------VATVVETVAGRVPVF 81 (309)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEE---CcccccchhCCHHHHHHH--------------------HHHHHHHhCCCCCEE
Confidence 589999999999999999886632 344444455555544433 1111111 111233
Q ss_pred EccCCcccccHHHHHHHHHHcCCcEEEEEcCC-CCh--HHHHHh----hhhc-ceEEEEeecCCCCCCcccHHHHHHHH
Q 025927 144 VHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPA-TSL--SAIECV----LDVV-DLVLIMSVNPGFGGQSFIESQVKKIS 214 (246)
Q Consensus 144 ~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~-Tpv--e~l~~~----l~~v-D~VLvMsV~PGfgGQ~F~~~~l~KI~ 214 (246)
+|.=+.++.+..+..+..++.|..+.+++.|. .+. +.+..| .+.. +.=+++==.|++.|..+.+++++++.
T Consensus 82 ~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P~y~~~~~~~l~~yf~~va~a~~~lPv~iYn~P~~tg~~l~~~~l~~L~ 160 (309)
T cd00952 82 VGATTLNTRDTIARTRALLDLGADGTMLGRPMWLPLDVDTAVQFYRDVAEAVPEMAIAIYANPEAFKFDFPRAAWAELA 160 (309)
T ss_pred EEeccCCHHHHHHHHHHHHHhCCCEEEECCCcCCCCCHHHHHHHHHHHHHhCCCCcEEEEcCchhcCCCCCHHHHHHHh
Confidence 34332223344455555556666666666553 121 222222 2223 22122222466666666666666553
No 461
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=66.19 E-value=1e+02 Score=27.93 Aligned_cols=126 Identities=13% Similarity=0.057 Sum_probs=77.4
Q ss_pred ccChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEEEc
Q 025927 66 SANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVH 145 (246)
Q Consensus 66 ~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It~H 145 (246)
..|+..+.+.++.+.+.|++-+=+= |+.-...++..+.-+++ ++..++.. +.|.+|
T Consensus 16 ~iD~~~~~~li~~l~~~Gv~Gl~~~---GstGE~~~Lt~eEr~~l--------------------~~~~~~~~-~~vi~g 71 (279)
T cd00953 16 KIDKEKFKKHCENLISKGIDYVFVA---GTTGLGPSLSFQEKLEL--------------------LKAYSDIT-DKVIFQ 71 (279)
T ss_pred CcCHHHHHHHHHHHHHcCCcEEEEc---ccCCCcccCCHHHHHHH--------------------HHHHHHHc-CCEEEE
Confidence 5789999999999999998755332 22222233443333322 33333322 236777
Q ss_pred cCCcccccHHHHHHHHHHcCCcEEEEEcCC-CC---hHHHHHhhhh-c-ceEEEEeecCCCCCCcccHHHHHHHHH
Q 025927 146 CEQSSTIHLHRTLNQIKDLGAKAGVVLNPA-TS---LSAIECVLDV-V-DLVLIMSVNPGFGGQSFIESQVKKISD 215 (246)
Q Consensus 146 ~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~-Tp---ve~l~~~l~~-v-D~VLvMsV~PGfgGQ~F~~~~l~KI~~ 215 (246)
+-+.++.+..+..+..++.|+.+-+++.|- .+ -+.+..|... . |.=++.==.|+..|..+.+++++|+.+
T Consensus 72 vg~~~~~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~~i~~yf~~v~~~lpv~iYn~P~~tg~~l~~~~l~~L~~ 147 (279)
T cd00953 72 VGSLNLEESIELARAAKSFGIYAIASLPPYYFPGIPEEWLIKYFTDISSPYPTFIYNYPKATGYDINARMAKEIKK 147 (279)
T ss_pred eCcCCHHHHHHHHHHHHHcCCCEEEEeCCcCCCCCCHHHHHHHHHHHHhcCCEEEEeCccccCCCCCHHHHHHHHh
Confidence 764445566677788889999988888885 22 3444433221 1 432333345899999999999887763
No 462
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=66.14 E-value=23 Score=36.13 Aligned_cols=104 Identities=25% Similarity=0.333 Sum_probs=68.8
Q ss_pred ChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchH--HHHhcCCCEEEEc
Q 025927 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVP--DFIKAGADIVSVH 145 (246)
Q Consensus 68 D~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~--~~~~agad~It~H 145 (246)
++..+.+.+++++++|+|+|-+==|=|...|.-. .+.++++|+..++|+.+|.=-..=..... .-+++||++|--=
T Consensus 152 t~~~~~~~a~~l~~~Gad~I~i~Dt~G~~~P~~~--~~lv~~lk~~~~~pi~~H~Hnt~Gla~An~laAv~aGad~vD~a 229 (592)
T PRK09282 152 TIEKYVELAKELEEMGCDSICIKDMAGLLTPYAA--YELVKALKEEVDLPVQLHSHCTSGLAPMTYLKAVEAGVDIIDTA 229 (592)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCcCCCcCHHHH--HHHHHHHHHhCCCeEEEEEcCCCCcHHHHHHHHHHhCCCEEEee
Confidence 5667788889999999999887666676666532 35677778766788888875543332222 2367899987554
Q ss_pred cCCc----ccccHHHHHHHHHHcCCcEEEEEc
Q 025927 146 CEQS----STIHLHRTLNQIKDLGAKAGVVLN 173 (246)
Q Consensus 146 ~E~~----~~~~~~~~i~~Ik~~G~k~GlAln 173 (246)
+-.. +....+.++..++..|...|+-+.
T Consensus 230 i~g~g~~agn~~~e~vv~~L~~~g~~~~idl~ 261 (592)
T PRK09282 230 ISPLAFGTSQPPTESMVAALKGTPYDTGLDLE 261 (592)
T ss_pred ccccCCCcCCHhHHHHHHHHHhCCCCCccCHH
Confidence 4322 234466777778877777665443
No 463
>PRK09875 putative hydrolase; Provisional
Probab=66.14 E-value=32 Score=31.96 Aligned_cols=83 Identities=18% Similarity=0.332 Sum_probs=53.4
Q ss_pred CCCCCeeEEEecc-CcccchHHHHhcCC---CEEEEccCCcccccHHHHHHHHHHcCCcEEE-EEc-----CC-CChHHH
Q 025927 113 VTDLPLDVHLMIV-EPEQRVPDFIKAGA---DIVSVHCEQSSTIHLHRTLNQIKDLGAKAGV-VLN-----PA-TSLSAI 181 (246)
Q Consensus 113 ~t~~plDvHLMV~-~P~~~i~~~~~aga---d~It~H~E~~~~~~~~~~i~~Ik~~G~k~Gl-Aln-----P~-Tpve~l 181 (246)
-|+.|+-+|.=.. .+...++.+.+.|+ ..+.=|.+. ..++. .+..+-+.|+-++. .+. |. .-++.+
T Consensus 150 ~TG~pi~~Ht~~~~~g~e~l~il~e~Gvd~~rvvi~H~d~--~~d~~-~~~~l~~~G~~l~fD~~g~~~~~pd~~r~~~i 226 (292)
T PRK09875 150 QTGRPISTHTSFSTMGLEQLALLQAHGVDLSRVTVGHCDL--KDNLD-NILKMIDLGAYVQFDTIGKNSYYPDEKRIAML 226 (292)
T ss_pred HHCCcEEEcCCCccchHHHHHHHHHcCcCcceEEEeCCCC--CCCHH-HHHHHHHcCCEEEeccCCCcccCCHHHHHHHH
Confidence 4899999996443 44466888899999 377789984 34443 44455578888776 322 21 224555
Q ss_pred HHhhhh--cceEEEEeecCC
Q 025927 182 ECVLDV--VDLVLIMSVNPG 199 (246)
Q Consensus 182 ~~~l~~--vD~VLvMsV~PG 199 (246)
..+++. .|.|++ |-+-|
T Consensus 227 ~~L~~~Gy~drilL-S~D~~ 245 (292)
T PRK09875 227 HALRDRGLLNRVML-SMDIT 245 (292)
T ss_pred HHHHhcCCCCeEEE-eCCCC
Confidence 555543 899888 55543
No 464
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=66.08 E-value=16 Score=33.99 Aligned_cols=79 Identities=23% Similarity=0.282 Sum_probs=68.5
Q ss_pred hhhHHHHHHHHHHcCCCEEEeee--ccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEEEcc
Q 025927 69 FAKLGEQVKAVELAGCDWIHVDV--MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHC 146 (246)
Q Consensus 69 ~~~l~~~i~~l~~~g~d~lHiDI--MDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It~H~ 146 (246)
+.+.++-.+.+++.|+|+|=+-| +=|.|-..-.+.++.++.|++.+++|+..|==.--|+..+.+.++.|+.-|-+.-
T Consensus 155 yT~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~ai~~GI~KiNi~T 234 (286)
T PRK08610 155 YADPKECQELVEKTGIDALAPALGSVHGPYKGEPKLGFKEMEEIGLSTGLPLVLHGGTGIPTKDIQKAIPFGTAKINVNT 234 (286)
T ss_pred cCCHHHHHHHHHHHCCCEEEeeccccccccCCCCCCCHHHHHHHHHHHCCCEEEeCCCCCCHHHHHHHHHCCCeEEEecc
Confidence 67788888888899999999999 8888843334566799999998899999999999999999999999999999987
Q ss_pred C
Q 025927 147 E 147 (246)
Q Consensus 147 E 147 (246)
|
T Consensus 235 ~ 235 (286)
T PRK08610 235 E 235 (286)
T ss_pred H
Confidence 6
No 465
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=65.90 E-value=37 Score=34.42 Aligned_cols=91 Identities=11% Similarity=0.114 Sum_probs=65.6
Q ss_pred hcCCCEEEEccCCcccccHHHHHHHHHH-------------cCCcEEEEEcCCCChHHHHHhhhhcceEEE---------
Q 025927 136 KAGADIVSVHCEQSSTIHLHRTLNQIKD-------------LGAKAGVVLNPATSLSAIECVLDVVDLVLI--------- 193 (246)
Q Consensus 136 ~agad~It~H~E~~~~~~~~~~i~~Ik~-------------~G~k~GlAlnP~Tpve~l~~~l~~vD~VLv--------- 193 (246)
+.|+..|.|+.=+ +.+++.++.+.++. ....+|+.+---.-+..++.++..+|++.|
T Consensus 381 ~~G~~~Im~PmV~-t~eE~~~~~~~~~~~~~~l~~~~~~~~~~~~vg~mIEtpaav~~~d~ia~~vDf~sIGtnDLsqy~ 459 (565)
T TIGR01417 381 AYGKLRIMFPMVA-TVEEIRAVKQELEEEKQELNDEGKAFDENIEVGVMIEIPSAALIADHLAKEVDFFSIGTNDLTQYT 459 (565)
T ss_pred hcCCCeEEecCCC-CHHHHHHHHHHHHHHHHHHHHhccccccCcEEEEEEcCHHHHHhHHHHHhhCCEEEEChhHHHHHH
Confidence 3588888887532 23444444444442 246788888777777889999999999987
Q ss_pred Eeec-----CCCCCCcccHHHHHHHHHHHHHHHhcCCCC
Q 025927 194 MSVN-----PGFGGQSFIESQVKKISDLRRMCLEKGVNP 227 (246)
Q Consensus 194 MsV~-----PGfgGQ~F~~~~l~KI~~lr~l~~~~~~~~ 227 (246)
|.++ -|..+|++.|.+++-|+++-+-..++|..+
T Consensus 460 la~dR~n~~l~~~~~~~hPaV~~~i~~vi~~a~~~g~~v 498 (565)
T TIGR01417 460 LAVDRGNDLISNLYQPYNPAVLRLIKLVIDAAKAEGIWV 498 (565)
T ss_pred HhhcccchhhhcccCCCCHHHHHHHHHHHHHHHHcCCeE
Confidence 3345 578899999999999999888887776543
No 466
>PRK12999 pyruvate carboxylase; Reviewed
Probab=65.87 E-value=11 Score=41.38 Aligned_cols=104 Identities=23% Similarity=0.322 Sum_probs=73.5
Q ss_pred cChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcc---cchHHHHhcCCCEEE
Q 025927 67 ANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPE---QRVPDFIKAGADIVS 143 (246)
Q Consensus 67 aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~---~~i~~~~~agad~It 143 (246)
.|+..+.+..++++++|+|.|-+==|=|...|.-.. +.+++||+..++|+++|.=-..=. +++ .-+++|||+|-
T Consensus 688 ~~~~~~~~~a~~l~~~Ga~~i~ikDt~G~l~P~~~~--~lv~~lk~~~~ipi~~H~Hnt~Gla~an~l-aA~~aGad~vD 764 (1146)
T PRK12999 688 YDLDYYVDLAKELEKAGAHILAIKDMAGLLKPAAAY--ELVSALKEEVDLPIHLHTHDTSGNGLATYL-AAAEAGVDIVD 764 (1146)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCccCCCCHHHHH--HHHHHHHHHcCCeEEEEeCCCCchHHHHHH-HHHHhCCCEEE
Confidence 477778888999999999999887777877775433 577888887788999987543322 233 33678999887
Q ss_pred EccCCc----ccccHHHHHHHHHHcCCcEEEEEc
Q 025927 144 VHCEQS----STIHLHRTLNQIKDLGAKAGVVLN 173 (246)
Q Consensus 144 ~H~E~~----~~~~~~~~i~~Ik~~G~k~GlAln 173 (246)
.=+-.. +...++.++..++..|...|+-+.
T Consensus 765 ~av~glg~~tgn~~le~vv~~L~~~~~~t~idl~ 798 (1146)
T PRK12999 765 VAVASMSGLTSQPSLNSIVAALEGTERDTGLDLD 798 (1146)
T ss_pred ecchhhcCCcCCHHHHHHHHHHHhcCCCCCcCHH
Confidence 665432 234467788888888877766554
No 467
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=65.80 E-value=90 Score=27.07 Aligned_cols=139 Identities=20% Similarity=0.234 Sum_probs=78.3
Q ss_pred hhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccC----CCCCeeEEEeccCcccc----hHHHHhcCCCE
Q 025927 70 AKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV----TDLPLDVHLMIVEPEQR----VPDFIKAGADI 141 (246)
Q Consensus 70 ~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~----t~~plDvHLMV~~P~~~----i~~~~~agad~ 141 (246)
....+-++.|.++|++++ ++- .|. .+++..+.+++. .+..+.++... .... ++.+.++|++.
T Consensus 14 ~~k~~i~~~L~~~Gv~~i--Evg----~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~g~~~ 83 (237)
T PF00682_consen 14 EEKLEIAKALDEAGVDYI--EVG----FPF--ASEDDFEQVRRLREALPNARLQALCRA--NEEDIERAVEAAKEAGIDI 83 (237)
T ss_dssp HHHHHHHHHHHHHTTSEE--EEE----HCT--SSHHHHHHHHHHHHHHHSSEEEEEEES--CHHHHHHHHHHHHHTTSSE
T ss_pred HHHHHHHHHHHHhCCCEE--EEc----ccc--cCHHHHHHhhhhhhhhcccccceeeee--hHHHHHHHHHhhHhccCCE
Confidence 344566788899999974 444 222 234444444332 33455554443 2233 34445599998
Q ss_pred EEEccCCcc--------------cccHHHHHHHHHHcCCcEEEEEcCC--CChHHHHHhhhh-----cceEEEEeecCCC
Q 025927 142 VSVHCEQSS--------------TIHLHRTLNQIKDLGAKAGVVLNPA--TSLSAIECVLDV-----VDLVLIMSVNPGF 200 (246)
Q Consensus 142 It~H~E~~~--------------~~~~~~~i~~Ik~~G~k~GlAlnP~--Tpve~l~~~l~~-----vD~VLvMsV~PGf 200 (246)
+.+-.-... .+...+.++++|++|.++.+.+.-. ++.+.+.++... +|.|-+- + -
T Consensus 84 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~--D--t 159 (237)
T PF00682_consen 84 IRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGADIIYLA--D--T 159 (237)
T ss_dssp EEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEEEEE--E--T
T ss_pred EEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCCeEEEee--C--c
Confidence 777654321 2346678999999999996665433 566777776543 5665443 1 1
Q ss_pred CCCcccHHHHHHHHHHHHHHHh
Q 025927 201 GGQSFIESQVKKISDLRRMCLE 222 (246)
Q Consensus 201 gGQ~F~~~~l~KI~~lr~l~~~ 222 (246)
.|...-..+.+-++.+|+..++
T Consensus 160 ~G~~~P~~v~~lv~~~~~~~~~ 181 (237)
T PF00682_consen 160 VGIMTPEDVAELVRALREALPD 181 (237)
T ss_dssp TS-S-HHHHHHHHHHHHHHSTT
T ss_pred cCCcCHHHHHHHHHHHHHhccC
Confidence 2333333555666777776653
No 468
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=65.70 E-value=1e+02 Score=27.67 Aligned_cols=126 Identities=19% Similarity=0.194 Sum_probs=69.7
Q ss_pred ccChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCC--CEEE
Q 025927 66 SANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGA--DIVS 143 (246)
Q Consensus 66 ~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~aga--d~It 143 (246)
..|+..+.+.++.+.+.|++.+=+= |+--....+..+.-+.+ ++..++.-+ --|.
T Consensus 17 ~iD~~~~~~~i~~l~~~Gv~gl~v~---GstGE~~~lt~~Er~~l--------------------~~~~~~~~~~~~~vi 73 (284)
T cd00950 17 SVDFDALERLIEFQIENGTDGLVVC---GTTGESPTLSDEEHEAV--------------------IEAVVEAVNGRVPVI 73 (284)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEC---CCCcchhhCCHHHHHHH--------------------HHHHHHHhCCCCcEE
Confidence 5788999999999999997754322 22222233443333322 222222211 1344
Q ss_pred EccCCcccccHHHHHHHHHHcCCcEEEEEcCCCCh---HHHHHh----hhhcceEEEEeecCCCCCCcccHHHHHHHH
Q 025927 144 VHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSL---SAIECV----LDVVDLVLIMSVNPGFGGQSFIESQVKKIS 214 (246)
Q Consensus 144 ~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpv---e~l~~~----l~~vD~VLvMsV~PGfgGQ~F~~~~l~KI~ 214 (246)
+++-..++.+..+..+..++.|+..-+++.|.... +.+..| .+..|+=+++==.|+..|..+-+++++++.
T Consensus 74 ~gv~~~~~~~~~~~a~~a~~~G~d~v~~~~P~~~~~~~~~l~~~~~~ia~~~~~pi~lYn~P~~~g~~ls~~~~~~L~ 151 (284)
T cd00950 74 AGTGSNNTAEAIELTKRAEKAGADAALVVTPYYNKPSQEGLYAHFKAIAEATDLPVILYNVPGRTGVNIEPETVLRLA 151 (284)
T ss_pred eccCCccHHHHHHHHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHhcCCCCEEEEEChhHhCCCCCHHHHHHHh
Confidence 55543334455666677777787777777775311 222222 233344334445677778888877777664
No 469
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=65.69 E-value=19 Score=32.44 Aligned_cols=38 Identities=32% Similarity=0.309 Sum_probs=31.9
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCChHHHHHhhhhcceEE
Q 025927 155 HRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVL 192 (246)
Q Consensus 155 ~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~~vD~VL 192 (246)
.++++++|+.|+.+.+.-|-.++.+.+..+++.+|.+.
T Consensus 144 ~~l~~~~k~~g~~~~i~TnG~~~~~~~~~ll~~~d~~~ 181 (295)
T TIGR02494 144 LALLQACHERGIHTAVETSGFTPWETIEKVLPYVDLFL 181 (295)
T ss_pred HHHHHHHHHcCCcEeeeCCCCCCHHHHHHHHhhCCEEE
Confidence 57899999999988888787777788889998899765
No 470
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=65.66 E-value=13 Score=33.63 Aligned_cols=66 Identities=23% Similarity=0.239 Sum_probs=43.8
Q ss_pred hHHHHhcCCCEEEEccCCccc-------ccHHHHHH----HHHHc-----CCcEEEEEcCCCCh---HHHHHhhhhcceE
Q 025927 131 VPDFIKAGADIVSVHCEQSST-------IHLHRTLN----QIKDL-----GAKAGVVLNPATSL---SAIECVLDVVDLV 191 (246)
Q Consensus 131 i~~~~~agad~It~H~E~~~~-------~~~~~~i~----~Ik~~-----G~k~GlAlnP~Tpv---e~l~~~l~~vD~V 191 (246)
++.+.+.|.|-|-|.+|.... .....+++ .+++. +....+++.+.... ..+..+.+.+|+|
T Consensus 108 ~~~l~~y~~DGidiD~e~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~ls~a~p~~~~~~~~~~~~~l~~~vD~v 187 (343)
T PF00704_consen 108 VSFLKKYGFDGIDIDWEYPSSSGDPQDKDNYTAFLKELRKALKRANRSGKGYILSVAVPPSPDYYDKYDYKELAQYVDYV 187 (343)
T ss_dssp HHHHHHHT-SEEEEEESSTTSTSSTTHHHHHHHHHHHHHHHHHHHHHHHSTSEEEEEEECSHHHHTTHHHHHHHTTSSEE
T ss_pred hhhhcccCcceeeeeeeeccccccchhhhhhhhhhhhhhhhhcccccccceeEEeecccccccccccccccccccccccc
Confidence 344456789999999996422 12334444 44453 88999998776431 2667778899999
Q ss_pred EEEee
Q 025927 192 LIMSV 196 (246)
Q Consensus 192 LvMsV 196 (246)
.+|+=
T Consensus 188 ~~m~y 192 (343)
T PF00704_consen 188 NLMTY 192 (343)
T ss_dssp EEETT
T ss_pred ccccc
Confidence 99974
No 471
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=65.63 E-value=1.1e+02 Score=30.31 Aligned_cols=106 Identities=21% Similarity=0.295 Sum_probs=61.5
Q ss_pred chHHHHhcCCCEEEEccCCcccccHHHHHHHHHHcCCcEEEEEc-------------CCCCh----HHHHHhhhhcceEE
Q 025927 130 RVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLN-------------PATSL----SAIECVLDVVDLVL 192 (246)
Q Consensus 130 ~i~~~~~agad~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAln-------------P~Tpv----e~l~~~l~~vD~VL 192 (246)
.|+.-++-|+|++|+|.=- -.+++..+|+.|=..|++=. -+-|+ ++|.+++..-|..|
T Consensus 145 ~ie~qa~dGVDfmTiH~Gi-----~~~~~~~~~~~~R~~giVSRGGs~~~~WM~~~~~ENPlye~fD~lLeI~~~yDVtl 219 (423)
T TIGR00190 145 AIEKQAKDGVDFMTIHAGV-----LLEYVERLKRSGRITGIVSRGGAILAAWMLHHHKENPLYKNFDYILEIAKEYDVTL 219 (423)
T ss_pred HHHHHHHhCCCEEEEccch-----hHHHHHHHHhCCCccCeecCcHHHHHHHHHHcCCcCchHHHHHHHHHHHHHhCeee
Confidence 4555677899999999752 23567777777755666532 22344 44445556788877
Q ss_pred EEe--ecCCCCCCcccHHHHHHH---HHHHHHHHhcCCCCeEEEeCCCChhhh
Q 025927 193 IMS--VNPGFGGQSFIESQVKKI---SDLRRMCLEKGVNPWIEVDGGVGPKNA 240 (246)
Q Consensus 193 vMs--V~PGfgGQ~F~~~~l~KI---~~lr~l~~~~~~~~~I~VDGGI~~e~i 240 (246)
-+. ..||.---.-....+.-+ -+|-+...++|.+.-||==|-+-.+.|
T Consensus 220 SLGDglRPG~i~DA~D~aQi~El~~lgeL~~rA~e~gVQvMVEGPGHvPl~~I 272 (423)
T TIGR00190 220 SLGDGLRPGCIADATDRAQISELITLGELVERAREADVQCMVEGPGHVPLDQI 272 (423)
T ss_pred eccCCcCCCccccCCcHHHHHHHHHHHHHHHHHHHcCCeEEEECCCCCcHHHH
Confidence 763 568775444444444333 344444456666555554445544433
No 472
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=65.60 E-value=21 Score=33.07 Aligned_cols=129 Identities=13% Similarity=0.149 Sum_probs=78.4
Q ss_pred cEEeeeecccChhhHHHHHHHHHHcCCCEEE-eeeccCcccCC--C-CCC-----HHHHhhcccCC-CCCeeEEEeccCc
Q 025927 58 IIVSPSILSANFAKLGEQVKAVELAGCDWIH-VDVMDGRFVPN--I-TIG-----PLVVDALRPVT-DLPLDVHLMIVEP 127 (246)
Q Consensus 58 ~~IsPSIl~aD~~~l~~~i~~l~~~g~d~lH-iDIMDG~FVpN--~-tfg-----p~~I~~ir~~t-~~plDvHLMV~~P 127 (246)
+.|.---=..+-.+..+ +.....|-.+-| +...|+..+.. + .+| ...++.+|+.. ..++.|-+ . .
T Consensus 123 ~~I~~TRKT~Pg~R~l~--k~Av~~GGg~~HR~gLsd~ilikdnHi~~~g~~~~i~~av~~~r~~~~~~kIeVEv--~-t 197 (277)
T TIGR01334 123 AVVACTRKAIPLTRPLA--VKAVLAAGGVIHRIGLSETLLVFANHRTFLNDNFDWGGAIGRLKQTAPERKITVEA--D-T 197 (277)
T ss_pred CEEEecCCCCCChhHHH--HHHHHhCCCcCeecCCchhheehHHHHHHhCCcccHHHHHHHHHHhCCCCCEEEEC--C-C
Confidence 33443344444444332 223345666666 45555543332 1 112 24566666642 23333332 3 4
Q ss_pred ccchHHHHhcCCCEEEEccCCcccccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhhh-cceEEE
Q 025927 128 EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV-VDLVLI 193 (246)
Q Consensus 128 ~~~i~~~~~agad~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~~-vD~VLv 193 (246)
.....+.+++|+|.|-+|= .+.+++.+..+.+++.+-++-+...-+-..+.+..|... +|+|-+
T Consensus 198 leea~ea~~~GaDiI~lDn--~~~e~l~~~v~~l~~~~~~~~leasGGI~~~ni~~ya~~GvD~is~ 262 (277)
T TIGR01334 198 IEQALTVLQASPDILQLDK--FTPQQLHHLHERLKFFDHIPTLAAAGGINPENIADYIEAGIDLFIT 262 (277)
T ss_pred HHHHHHHHHcCcCEEEECC--CCHHHHHHHHHHHhccCCCEEEEEECCCCHHHHHHHHhcCCCEEEe
Confidence 4456667889999999982 235667788888876677888999999999999999875 888743
No 473
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=65.57 E-value=10 Score=35.69 Aligned_cols=78 Identities=24% Similarity=0.319 Sum_probs=48.0
Q ss_pred ChhhHHHHHHHHHHcCCCEEEeeec-cCcccCCC--CC----CHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCC
Q 025927 68 NFAKLGEQVKAVELAGCDWIHVDVM-DGRFVPNI--TI----GPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGAD 140 (246)
Q Consensus 68 D~~~l~~~i~~l~~~g~d~lHiDIM-DG~FVpN~--tf----gp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad 140 (246)
+.....+-++.|+++|+|++|+-.. ...-++.. .+ -.+..+.+|+.+++|+-+-=.+.+|+..-+.+.+-++|
T Consensus 222 ~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~~~~~a~~~i~~g~~D 301 (353)
T cd02930 222 TWEEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAVDIPVIASNRINTPEVAERLLADGDAD 301 (353)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhCCCCEEEcCCCCCHHHHHHHHHCCCCC
Confidence 4444556678899999999999542 11122222 11 13446778888888876655566666555444444588
Q ss_pred EEEEc
Q 025927 141 IVSVH 145 (246)
Q Consensus 141 ~It~H 145 (246)
.|.+=
T Consensus 302 ~V~~g 306 (353)
T cd02930 302 MVSMA 306 (353)
T ss_pred hhHhh
Confidence 88763
No 474
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=65.42 E-value=14 Score=34.09 Aligned_cols=74 Identities=12% Similarity=0.294 Sum_probs=48.5
Q ss_pred HHHHHHHHHHcC--CcEEEEEcCCCChHHHHHhhhh-cceEEEEeecCCCCCCcccHHHHHHHHHHHHHHHhcCCCCeEE
Q 025927 154 LHRTLNQIKDLG--AKAGVVLNPATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIE 230 (246)
Q Consensus 154 ~~~~i~~Ik~~G--~k~GlAlnP~Tpve~l~~~l~~-vD~VLvMsV~PGfgGQ~F~~~~l~KI~~lr~l~~~~~~~~~I~ 230 (246)
+...++.+|+.. .++|+-. +| ++.+...++. +|+|++ + +|-++.++++. ++.+ -+..++
T Consensus 176 v~~av~~~r~~~~~~~I~VEv--~t-leea~eA~~~gaD~I~L---D------~~~~e~l~~~v---~~~~---~~i~le 237 (277)
T PRK05742 176 IAQAVAAAHRIAPGKPVEVEV--ES-LDELRQALAAGADIVML---D------ELSLDDMREAV---RLTA---GRAKLE 237 (277)
T ss_pred HHHHHHHHHHhCCCCeEEEEe--CC-HHHHHHHHHcCCCEEEE---C------CCCHHHHHHHH---HHhC---CCCcEE
Confidence 456677777764 5566655 34 6666666543 899965 2 45556555444 3332 246799
Q ss_pred EeCCCChhhhhhccc
Q 025927 231 VDGGVGPKNAYKVPN 245 (246)
Q Consensus 231 VDGGI~~e~i~~l~~ 245 (246)
+=||||.+|++++.+
T Consensus 238 AsGGIt~~ni~~~a~ 252 (277)
T PRK05742 238 ASGGINESTLRVIAE 252 (277)
T ss_pred EECCCCHHHHHHHHH
Confidence 999999999998764
No 475
>cd08148 RuBisCO_large Ribulose bisphosphate carboxylase large chain. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions.
Probab=65.41 E-value=9.8 Score=36.65 Aligned_cols=117 Identities=21% Similarity=0.226 Sum_probs=78.5
Q ss_pred cceeccccCCCCCCceeccccceeeeeeccccccCCCCCcEEeeeecccChhhHHHHHHHHHHcCCCEEEeeeccCcccC
Q 025927 19 GFMLQKTNLNQPSSLSFTRRRIQTIVKASARVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVP 98 (246)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IsPSIl~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVp 98 (246)
++...+-.+..++-. --+.|++.+..|-.|..+-......-+|-|- ++...+.+..+.+.+.|++.+.+|++-
T Consensus 158 D~IKDDE~l~~q~~~-p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiT-~~~~em~~ra~~~~~~G~~~~mv~~~~----- 230 (366)
T cd08148 158 DLIKDDETLTDQPFC-PLRDRITEVAAALDRVQEETGEKKLYAVNVT-AGTFEIIERAERALELGANMLMVDVLT----- 230 (366)
T ss_pred CccccccccCCCCCC-cHHHHHHHHHHHHHHHHHhhCCcceEEEEcc-CCHHHHHHHHHHHHHhCCCEEEEeccc-----
Confidence 555555555444433 3345566666666665554444556677665 677999999999999999999999864
Q ss_pred CCCCCHHHHhhcccC--CCCCeeEEE-----eccCcc-----c-chHHHHhcCCCEEEEc
Q 025927 99 NITIGPLVVDALRPV--TDLPLDVHL-----MIVEPE-----Q-RVPDFIKAGADIVSVH 145 (246)
Q Consensus 99 N~tfgp~~I~~ir~~--t~~plDvHL-----MV~~P~-----~-~i~~~~~agad~It~H 145 (246)
.|...+..|++. .++|+..|- |..+|. . |-+.+.-+|+|.+.+.
T Consensus 231 ---~G~~~l~~l~~~~~~~l~IhaHrA~~ga~~~~~~~G~~~~~l~kl~RLaGaD~~~~~ 287 (366)
T cd08148 231 ---AGFSALQALAEDFEIDLPIHVHRAMHGAVTRSKFHGISMLVLAKLLRMAGGDFIHTG 287 (366)
T ss_pred ---cchHHHHHHHHhCcCCcEEEeccccccccccCCCCCcCHHHHHHHHHHcCCCccccC
Confidence 355578888763 478999994 444454 1 2223345799988876
No 476
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=65.32 E-value=18 Score=34.41 Aligned_cols=92 Identities=12% Similarity=0.111 Sum_probs=57.3
Q ss_pred HHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcC-CCEEEEccCCccc
Q 025927 73 GEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAG-ADIVSVHCEQSST 151 (246)
Q Consensus 73 ~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~ag-ad~It~H~E~~~~ 151 (246)
.+-++.|++.|+|++|+-. |.+.....+...+.+.+|+.++.|+-+-= ..+|+. .+..++.| +|.|.+==-.++
T Consensus 252 ~~~~~~L~~~giD~i~vs~--~~~~~~~~~~~~~~~~ik~~~~~pv~~~G-~~~~~~-ae~~i~~G~~D~V~~gR~~ia- 326 (362)
T PRK10605 252 LYLIEQLGKRGIAYLHMSE--PDWAGGEPYSDAFREKVRARFHGVIIGAG-AYTAEK-AETLIGKGLIDAVAFGRDYIA- 326 (362)
T ss_pred HHHHHHHHHcCCCEEEecc--ccccCCccccHHHHHHHHHHCCCCEEEeC-CCCHHH-HHHHHHcCCCCEEEECHHhhh-
Confidence 4557889999999999875 33332335556677888887777755432 225655 55666656 999998544322
Q ss_pred ccHHHHHHHHHHcCCcEEEEEcCCC
Q 025927 152 IHLHRTLNQIKDLGAKAGVVLNPAT 176 (246)
Q Consensus 152 ~~~~~~i~~Ik~~G~k~GlAlnP~T 176 (246)
+| .+.++++ -|..+++..
T Consensus 327 -dP-d~~~k~~-----~g~~~~~~~ 344 (362)
T PRK10605 327 -NP-DLVARLQ-----RKAELNPQR 344 (362)
T ss_pred -Cc-cHHHHHh-----cCCCCCCCC
Confidence 33 2455554 356666653
No 477
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=65.30 E-value=39 Score=35.65 Aligned_cols=107 Identities=12% Similarity=0.011 Sum_probs=72.4
Q ss_pred hcCCC---EEEEccCCcccccHHHHHHHHHHcC-------CcEEEEEcCCCChHHHHHhhhhcceEEE---------Eee
Q 025927 136 KAGAD---IVSVHCEQSSTIHLHRTLNQIKDLG-------AKAGVVLNPATSLSAIECVLDVVDLVLI---------MSV 196 (246)
Q Consensus 136 ~agad---~It~H~E~~~~~~~~~~i~~Ik~~G-------~k~GlAlnP~Tpve~l~~~l~~vD~VLv---------MsV 196 (246)
+.|+. ++.-++++ .++..++.+.++..| .++|+.+--..-+..++.++..+|++.+ |.+
T Consensus 625 d~G~~~~~Im~PmV~s--~eE~~~~~~~~~~~g~~~~~~~~~vg~mIEtp~av~~~d~Ia~~vDfisIGtnDLtq~~lg~ 702 (782)
T TIGR01418 625 EMGLTNVEVMIPFVRT--PEEGKRALEIMAEEGLRRGKNGLEVYVMCEVPSNALLADEFAKEFDGFSIGSNDLTQLTLGV 702 (782)
T ss_pred hcCCCCeEEEecCCCC--HHHHHHHHHHHHHhCccccccCcEEEEEECcHHHHHHHHHHHHhCCEEEECchHHHHHHhCc
Confidence 45754 44444563 456667777777654 4567777666666888999999999876 444
Q ss_pred cC-----CCCCCcccHHHHHHHHHHHHHHHhcCCCCeEEEeCC-CChhhhhhcc
Q 025927 197 NP-----GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGG-VGPKNAYKVP 244 (246)
Q Consensus 197 ~P-----GfgGQ~F~~~~l~KI~~lr~l~~~~~~~~~I~VDGG-I~~e~i~~l~ 244 (246)
+- |..++.+.|.+++-|+++.+-..++|..+-|.-+.+ .+.+.++.+.
T Consensus 703 dR~n~~~~~~~~~~hPaV~~~i~~vi~~a~~~g~~vgicge~~~~~p~~~~~l~ 756 (782)
T TIGR01418 703 DRDSGLVAHLFDERNPAVLRLIEMAIKAAKEHGKKVGICGQAPSDYPEVVEFLV 756 (782)
T ss_pred cCCchhhcccCCCCCHHHHHHHHHHHHHHHhcCCeEEEeCCCCCCCHHHHHHHH
Confidence 32 456889999999999999998888876544433312 2566666554
No 478
>PRK06801 hypothetical protein; Provisional
Probab=65.18 E-value=1.2e+02 Score=28.26 Aligned_cols=170 Identities=11% Similarity=0.099 Sum_probs=99.3
Q ss_pred ccChhhHHHHHHHHHHcCCCEEEeeeccCcccC-CCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEEE
Q 025927 66 SANFAKLGEQVKAVELAGCDWIHVDVMDGRFVP-NITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSV 144 (246)
Q Consensus 66 ~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVp-N~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It~ 144 (246)
+.|+.-+..-++..|+.+...| +-+-.|++-- ++..-..+++++.+..+.|+-+||==......++..++.|.+.|-+
T Consensus 25 ~~n~e~~~avi~AAe~~~~PvI-l~~~~~~~~~~~~~~~~~~~~~~a~~~~vpV~lHlDH~~~~e~i~~Ai~~GftSVm~ 103 (286)
T PRK06801 25 VLDSHFLRALFAAAKQERSPFI-INIAEVHFKYISLESLVEAVKFEAARHDIPVVLNLDHGLHFEAVVRALRLGFSSVMF 103 (286)
T ss_pred eCCHHHHHHHHHHHHHHCCCEE-EEeCcchhhcCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHhCCcEEEE
Confidence 3466666677788888877644 4555554410 1111122344445556899999996666667788888899988877
Q ss_pred ccCCcc----cccHHHHHHHHHHcCCcEEEE------------Ec-----CCCChHHHHHhhh--hcceEEEEeecC--C
Q 025927 145 HCEQSS----TIHLHRTLNQIKDLGAKAGVV------------LN-----PATSLSAIECVLD--VVDLVLIMSVNP--G 199 (246)
Q Consensus 145 H~E~~~----~~~~~~~i~~Ik~~G~k~GlA------------ln-----P~Tpve~l~~~l~--~vD~VLvMsV~P--G 199 (246)
=--... .....++.+.+|+.|+-+-.. .. -.|..+....+.. .+|++=+ ++=+ |
T Consensus 104 D~S~l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~vgg~e~~v~~~~~~~~~~T~pe~a~~f~~~tgvD~LAv-aiGt~Hg 182 (286)
T PRK06801 104 DGSTLEYEENVRQTREVVKMCHAVGVSVEAELGAVGGDEGGALYGEADSAKFTDPQLARDFVDRTGIDALAV-AIGNAHG 182 (286)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHcCCeEEeecCcccCCCCCcccCCcccccCCCHHHHHHHHHHHCcCEEEe-ccCCCCC
Confidence 211100 112335666677888654111 11 2566677788774 5888777 5532 3
Q ss_pred CC-C-CcccHHHHHHHHHHHHHHHhcCCCCeEEEeCC--CChhhhhhccc
Q 025927 200 FG-G-QSFIESQVKKISDLRRMCLEKGVNPWIEVDGG--VGPKNAYKVPN 245 (246)
Q Consensus 200 fg-G-Q~F~~~~l~KI~~lr~l~~~~~~~~~I~VDGG--I~~e~i~~l~~ 245 (246)
.. | .+...+. ++++++.. +.-+..=|| ++.++++++++
T Consensus 183 ~y~~~~~l~~e~---l~~i~~~~-----~~PLVlHGGSgi~~e~~~~~i~ 224 (286)
T PRK06801 183 KYKGEPKLDFAR---LAAIHQQT-----GLPLVLHGGSGISDADFRRAIE 224 (286)
T ss_pred CCCCCCCCCHHH---HHHHHHhc-----CCCEEEECCCCCCHHHHHHHHH
Confidence 22 2 2344444 44444432 234777888 99999988754
No 479
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=65.17 E-value=76 Score=30.13 Aligned_cols=132 Identities=14% Similarity=0.154 Sum_probs=0.0
Q ss_pred cCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEEEEccCCcccccHHHHHHHHHHcCCcEEEEE
Q 025927 93 DGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL 172 (246)
Q Consensus 93 DG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAl 172 (246)
||...|+..|..+...+| ++.+.++|++.|-+-.=. ..++..+.++.+.+.+..+-++-
T Consensus 10 DG~Q~~~~~~s~~~k~~i--------------------a~~L~~~Gv~~IEvG~p~-~~~~~~e~i~~i~~~~~~~~v~~ 68 (363)
T TIGR02090 10 DGEQTPGVSLTVEQKVEI--------------------ARKLDELGVDVIEAGFPI-ASEGEFEAIKKISQEGLNAEICS 68 (363)
T ss_pred CcCCCCCCCCCHHHHHHH--------------------HHHHHHcCCCEEEEeCCC-CChHHHHHHHHHHhcCCCcEEEE
Q ss_pred cCCCChHHHHHhhhh-cceEEE-EeecCCCCCCccc---HHHHHHHHHHHHHHHhcCCCCeEEE-eCC-CChhhhhhccc
Q 025927 173 NPATSLSAIECVLDV-VDLVLI-MSVNPGFGGQSFI---ESQVKKISDLRRMCLEKGVNPWIEV-DGG-VGPKNAYKVPN 245 (246)
Q Consensus 173 nP~Tpve~l~~~l~~-vD~VLv-MsV~PGfgGQ~F~---~~~l~KI~~lr~l~~~~~~~~~I~V-DGG-I~~e~i~~l~~ 245 (246)
.-....+.++..++. +|.|-+ .++.+-.--.+|. ++.++++.+.-++..+.|+.+.+.. |++ .+.+-+.++++
T Consensus 69 ~~r~~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda~r~~~~~l~~~~~ 148 (363)
T TIGR02090 69 LARALKKDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAEDATRTDIDFLIKVFK 148 (363)
T ss_pred EcccCHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeecCCCCHHHHHHHHH
No 480
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=65.14 E-value=92 Score=28.70 Aligned_cols=67 Identities=13% Similarity=0.175 Sum_probs=40.8
Q ss_pred HHHhcCCC-EEEEccCCcc------------cccHHHHHHHHHHcCCcEEEEEcCCCCh---HHHHHhhhh-----cceE
Q 025927 133 DFIKAGAD-IVSVHCEQSS------------TIHLHRTLNQIKDLGAKAGVVLNPATSL---SAIECVLDV-----VDLV 191 (246)
Q Consensus 133 ~~~~agad-~It~H~E~~~------------~~~~~~~i~~Ik~~G~k~GlAlnP~Tpv---e~l~~~l~~-----vD~V 191 (246)
.+.++|.+ .|.+=+|+.. .++..+.++.+|++|+++.+-+-.+.|- +.+..-+.. +|.|
T Consensus 131 ~l~~~G~~~~i~lGlQS~~d~~L~~i~Rg~t~~~~~~ai~~l~~~gi~v~~~lI~GlPget~e~~~~t~~~l~~l~~d~i 210 (302)
T TIGR01212 131 EYVERGYEVWVELGLQTAHDKTLKKINRGHDFACYVDAVKRARKRGIKVCSHVILGLPGEDREEMMETAKIVSLLDVDGI 210 (302)
T ss_pred HhhhCCceEEEEEccCcCCHHHHHHHcCcChHHHHHHHHHHHHHcCCEEEEeEEECCCCCCHHHHHHHHHHHHhcCCCEE
Confidence 34456884 6888888641 1246678888999999887665544444 443333322 5554
Q ss_pred EE--EeecCC
Q 025927 192 LI--MSVNPG 199 (246)
Q Consensus 192 Lv--MsV~PG 199 (246)
-+ +.+.||
T Consensus 211 ~i~~l~~~pg 220 (302)
T TIGR01212 211 KIHPLHVVKG 220 (302)
T ss_pred EEEEEEecCC
Confidence 44 666777
No 481
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=65.02 E-value=22 Score=31.84 Aligned_cols=113 Identities=17% Similarity=0.198 Sum_probs=59.7
Q ss_pred ChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhc-ccCCCCCeeEEEe-----ccCcccc---hHHHHhc-
Q 025927 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDAL-RPVTDLPLDVHLM-----IVEPEQR---VPDFIKA- 137 (246)
Q Consensus 68 D~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~i-r~~t~~plDvHLM-----V~~P~~~---i~~~~~a- 137 (246)
|..++.+.++.+.+.|. .+.+-+||..- ..|+.+.++ ++......|.--. +..|.+. ++.+.+.
T Consensus 110 ~~~~~~~~i~~ak~~G~-~v~~~~~~~~~-----~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~ 183 (263)
T cd07943 110 EADVSEQHIGAARKLGM-DVVGFLMMSHM-----ASPEELAEQAKLMESYGADCVYVTDSAGAMLPDDVRERVRALREAL 183 (263)
T ss_pred hHHHHHHHHHHHHHCCC-eEEEEEEeccC-----CCHHHHHHHHHHHHHcCCCEEEEcCCCCCcCHHHHHHHHHHHHHhC
Confidence 55677888888888875 58888888743 334554443 2222223333111 3356643 3344332
Q ss_pred CCCEEEEccCCcccccHHHHHHHHHHcCCc------EEEEEcC-CCChHHHHHhhhh
Q 025927 138 GADIVSVHCEQSSTIHLHRTLNQIKDLGAK------AGVVLNP-ATSLSAIECVLDV 187 (246)
Q Consensus 138 gad~It~H~E~~~~~~~~~~i~~Ik~~G~k------~GlAlnP-~Tpve~l~~~l~~ 187 (246)
+.-.+.||.=..-.--....+..+ ++|+. .|+.=.. +.++|.+..+|..
T Consensus 184 ~~~~l~~H~Hn~~GlA~AN~laAi-~aGa~~vd~s~~GlG~~aGN~~~E~lv~~L~~ 239 (263)
T cd07943 184 DPTPVGFHGHNNLGLAVANSLAAV-EAGATRIDGSLAGLGAGAGNTPLEVLVAVLER 239 (263)
T ss_pred CCceEEEEecCCcchHHHHHHHHH-HhCCCEEEeecccccCCcCCccHHHHHHHHHh
Confidence 322678886542111234556665 35644 2333333 3777877777643
No 482
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=65.01 E-value=27 Score=31.94 Aligned_cols=67 Identities=13% Similarity=0.222 Sum_probs=45.2
Q ss_pred hHHHHhcCCCEEEEccCCccc--c---cHHHHHHHHH----H-----cCCcEEEEEcCCCChH----H-HHHhhhhcceE
Q 025927 131 VPDFIKAGADIVSVHCEQSST--I---HLHRTLNQIK----D-----LGAKAGVVLNPATSLS----A-IECVLDVVDLV 191 (246)
Q Consensus 131 i~~~~~agad~It~H~E~~~~--~---~~~~~i~~Ik----~-----~G~k~GlAlnP~Tpve----~-l~~~l~~vD~V 191 (246)
++.+.+.|-|-|-+++|.... . +...+++.+| + .+....+++.|.+... . +..+.+.+|+|
T Consensus 100 ~~~~~~~~~DGidiDwE~~~~~~~d~~~~~~ll~~lr~~l~~~~~~~~~~~lsi~v~~~~~~~~~~~~~~~~l~~~vD~v 179 (334)
T smart00636 100 VSFLKKYGFDGIDIDWEYPGARGDDRENYTALLKELREALDKEGAEGKGYLLTIAVPAGPDKIDKGYGDLPAIAKYLDFI 179 (334)
T ss_pred HHHHHHcCCCeEEECCcCCCCCccHHHHHHHHHHHHHHHHHHhcccCCceEEEEEecCChHHHHhhhhhHHHHHhhCcEE
Confidence 334456799999999996322 1 2444555554 2 2677888888865542 3 46777889999
Q ss_pred EEEeec
Q 025927 192 LIMSVN 197 (246)
Q Consensus 192 LvMsV~ 197 (246)
.||+-+
T Consensus 180 ~vm~YD 185 (334)
T smart00636 180 NLMTYD 185 (334)
T ss_pred EEeeec
Confidence 999987
No 483
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=65.00 E-value=71 Score=31.77 Aligned_cols=103 Identities=15% Similarity=0.341 Sum_probs=60.1
Q ss_pred ccchHHHHhcCCCEEEEccCCcccccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhhh-cceEEEEeecCC-------
Q 025927 128 EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV-VDLVLIMSVNPG------- 199 (246)
Q Consensus 128 ~~~i~~~~~agad~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~~-vD~VLvMsV~PG------- 199 (246)
...++.|+++|+|.|.+-.-.--.....+++++||+.-..+-+........+..+.+++. +|.|-| ++-||
T Consensus 227 ~~ra~~Lv~aGVd~i~~D~a~g~~~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~G~d~i~v-g~g~Gs~~ttr~ 305 (475)
T TIGR01303 227 GGKAKALLDAGVDVLVIDTAHGHQVKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEAGANIIKV-GVGPGAMCTTRM 305 (475)
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCcHHHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHhCCCEEEE-CCcCCccccCcc
Confidence 356788999999999874321112345677888888644455555555666777777664 888652 22222
Q ss_pred CC--CCcccHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCh
Q 025927 200 FG--GQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP 237 (246)
Q Consensus 200 fg--GQ~F~~~~l~KI~~lr~l~~~~~~~~~I~VDGGI~~ 237 (246)
+. |.+-....+ ++.+...+. ++.|..||||+.
T Consensus 306 ~~~~g~~~~~a~~----~~~~~~~~~--~~~viadGgi~~ 339 (475)
T TIGR01303 306 MTGVGRPQFSAVL----ECAAEARKL--GGHVWADGGVRH 339 (475)
T ss_pred ccCCCCchHHHHH----HHHHHHHHc--CCcEEEeCCCCC
Confidence 11 334333333 333333333 356889999975
No 484
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=64.85 E-value=47 Score=31.95 Aligned_cols=107 Identities=23% Similarity=0.296 Sum_probs=71.0
Q ss_pred CCCeeEEEeccCccc-------chHHHHhcCCCEEEEccCCcccccHHHHHHHHHHcCCcEEEEEcCCCCh-HHHHHhhh
Q 025927 115 DLPLDVHLMIVEPEQ-------RVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSL-SAIECVLD 186 (246)
Q Consensus 115 ~~plDvHLMV~~P~~-------~i~~~~~agad~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpv-e~l~~~l~ 186 (246)
+-|+-|.=|+..+.. .+..|.++|+++|-+-+- ..+-.+.+..||+ +..+=|+-.-.... -.+...-.
T Consensus 17 ~~PI~VQSMtnt~T~Dv~atv~QI~~L~~aGceiVRvavp---~~~~A~al~~I~~-~~~iPlVADIHFd~~lAl~a~~~ 92 (346)
T TIGR00612 17 DAPIVVQSMTNTDTIDIDSTVAQIRALEEAGCDIVRVTVP---DRESAAAFEAIKE-GTNVPLVADIHFDYRLAALAMAK 92 (346)
T ss_pred CCcEEEEecCCCCchhHHHHHHHHHHHHHcCCCEEEEcCC---CHHHHHhHHHHHh-CCCCCEEEeeCCCcHHHHHHHHh
Confidence 468888889887764 466788899998877554 2344577888887 44444443333321 22222222
Q ss_pred hcceEEEEeecCCCCCCcccHHHHHHHHHHHHHHHhcCCCCeEEEeCC
Q 025927 187 VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGG 234 (246)
Q Consensus 187 ~vD~VLvMsV~PGfgGQ~F~~~~l~KI~~lr~l~~~~~~~~~I~VDGG 234 (246)
-+|. .-+|||.=|. -+|++++-+...++|....|.|-.|
T Consensus 93 g~dk---iRINPGNig~------~e~v~~vv~~ak~~~ipIRIGVN~G 131 (346)
T TIGR00612 93 GVAK---VRINPGNIGF------RERVRDVVEKARDHGKAMRIGVNHG 131 (346)
T ss_pred ccCe---EEECCCCCCC------HHHHHHHHHHHHHCCCCEEEecCCC
Confidence 3454 4679996554 4788888888889998889988655
No 485
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=64.78 E-value=12 Score=41.00 Aligned_cols=104 Identities=22% Similarity=0.311 Sum_probs=71.9
Q ss_pred ChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcc---cchHHHHhcCCCEEEE
Q 025927 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPE---QRVPDFIKAGADIVSV 144 (246)
Q Consensus 68 D~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~---~~i~~~~~agad~It~ 144 (246)
++..+.+..++++++|+|.|.+==|=|...|.-. .+.+++||+..++|+++|.=-..=. +++. -+++|||+|-.
T Consensus 687 ~l~y~~~~ak~l~~~Gad~I~ikDt~Gll~P~~~--~~Lv~~lk~~~~~pi~~H~Hdt~Gla~an~la-A~eaGad~vD~ 763 (1143)
T TIGR01235 687 DLKYYTNLAVELEKAGAHILGIKDMAGLLKPAAA--KLLIKALREKTDLPIHFHTHDTSGIAVASMLA-AVEAGVDVVDV 763 (1143)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCcCCcCHHHH--HHHHHHHHHhcCCeEEEEECCCCCcHHHHHHH-HHHhCCCEEEe
Confidence 4556668889999999999988777788777533 2477888887789999998544322 2332 26789999876
Q ss_pred ccCCc----ccccHHHHHHHHHHcCCcEEEEEcC
Q 025927 145 HCEQS----STIHLHRTLNQIKDLGAKAGVVLNP 174 (246)
Q Consensus 145 H~E~~----~~~~~~~~i~~Ik~~G~k~GlAlnP 174 (246)
=+-.. +...+..++..++..|...|+-+..
T Consensus 764 ai~gl~G~ts~p~~e~~v~~L~~~~~~tgidl~~ 797 (1143)
T TIGR01235 764 AVDSMSGLTSQPSLGAIVAALEGSERDPGLNVAW 797 (1143)
T ss_pred cchhhcCCCCCHhHHHHHHHHHhCCCCCCcCHHH
Confidence 55432 1234667788888778777765443
No 486
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=64.66 E-value=65 Score=30.23 Aligned_cols=64 Identities=17% Similarity=0.207 Sum_probs=43.7
Q ss_pred HHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHH--HhcCCCEEEEccCC
Q 025927 73 GEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDF--IKAGADIVSVHCEQ 148 (246)
Q Consensus 73 ~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~--~~agad~It~H~E~ 148 (246)
-.|.+.|++.|+|+| |.+-++.- -.+.+..+|...+.| +|. +..++=+.+ .+.|+|+|.-..|+
T Consensus 79 ~~Ea~~L~~~GvDiI-----DeTe~lrP--ade~~~~~K~~f~vp----fma-d~~~l~EAlrai~~GadmI~Tt~e~ 144 (287)
T TIGR00343 79 FVEAQILEALGVDYI-----DESEVLTP--ADWTFHIDKKKFKVP----FVC-GARDLGEALRRINEGAAMIRTKGEA 144 (287)
T ss_pred HHHHHHHHHcCCCEE-----EccCCCCc--HHHHHHHHHHHcCCC----EEc-cCCCHHHHHHHHHCCCCEEeccccC
Confidence 588999999999998 57776543 356677666533444 443 444444444 55799999999775
No 487
>PF00121 TIM: Triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase (5.3.1.1 from EC) (TIM) [] is the glycolytic enzyme that catalyses the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is present in eukaryotes as well as in prokaryotes. TIM is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism [, ]. The tertiary structure of TIM has eight beta/alpha motifs folded into a barrel structure. The TIM barrel fold occurs ubiquitously and is found in numerous other enzymes that can be involved in energy metabolism, macromolecule metabolism, or small molecule metabolism []. The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder [].; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process; PDB: 2YPI_A 1YPI_A 1NEY_B 1NF0_B 1I45_A 7TIM_A 3YPI_B 2H6R_H 2Y63_A 1N55_A ....
Probab=64.60 E-value=23 Score=32.01 Aligned_cols=115 Identities=18% Similarity=0.298 Sum_probs=69.7
Q ss_pred hHHHHhcCCCEEEE-ccCCc-----ccccHHHHHHHHHHcCCcEEEEEcC-------CCCh----HHHHHhhhhcce---
Q 025927 131 VPDFIKAGADIVSV-HCEQS-----STIHLHRTLNQIKDLGAKAGVVLNP-------ATSL----SAIECVLDVVDL--- 190 (246)
Q Consensus 131 i~~~~~agad~It~-H~E~~-----~~~~~~~~i~~Ik~~G~k~GlAlnP-------~Tpv----e~l~~~l~~vD~--- 190 (246)
.+.+.+.|++++.+ |.|-= +.+.+.+-++...++|+++=+.+.- +... +.++..|+.+|.
T Consensus 77 ~~mL~d~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIvCvGE~~~~~~~~~~~~~l~~Ql~~~l~~i~~~~~ 156 (244)
T PF00121_consen 77 AEMLKDLGCKYVIIGHSERRQYFGETDEIINKKVKAALENGLTPIVCVGETLEERESGKTKEVLKRQLKSILKGIDKEEL 156 (244)
T ss_dssp HHHHHHTTESEEEESCHHHHHHST-BHHHHHHHHHHHHHTT-EEEEEESSBHHHHHTTCHHHHHHHHHHHHHTTSSGGGG
T ss_pred HHHHHHhhCCEEEeccccccCccccccHHHHHHHHHHHHCCCEEEEEeccchhhhhcCcHHHHHHHHHHHHHhccccccc
Confidence 45667788887766 54410 2345667777788999999998886 2222 334455555653
Q ss_pred -EEEEeecCCC---CCCcccHHHHHHH-HHHHHHHHh-----cCCCCeEEEeCCCChhhhhhccc
Q 025927 191 -VLIMSVNPGF---GGQSFIESQVKKI-SDLRRMCLE-----KGVNPWIEVDGGVGPKNAYKVPN 245 (246)
Q Consensus 191 -VLvMsV~PGf---gGQ~F~~~~l~KI-~~lr~l~~~-----~~~~~~I~VDGGI~~e~i~~l~~ 245 (246)
=++..-||=+ .|+.-.++-.+++ +.+|+++.+ .+-+..|.-=|+|+.+|+.++..
T Consensus 157 ~~~iIAYEPvWAIGtG~~as~~~~~~~~~~Ir~~l~~~~~~~~~~~~~ILYGGSV~~~N~~~l~~ 221 (244)
T PF00121_consen 157 KNIIIAYEPVWAIGTGKTASPEQIQEVHAFIREILAELYGEEVANNIRILYGGSVNPENAAELLS 221 (244)
T ss_dssp TCEEEEEEEGGGTSSSS-CCHHHHHHHHHHHHHHHHHHTHHHHHHHSEEEEESSESTTTHHHHHT
T ss_pred cceEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHHhccccccCceeEEECCcCCcccHHHHhc
Confidence 3677789844 3666544444332 233444322 23347899999999999998753
No 488
>PRK08575 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=64.59 E-value=11 Score=35.15 Aligned_cols=136 Identities=18% Similarity=0.230 Sum_probs=72.4
Q ss_pred HHHHHHHHHHcCCCEEEeeeccCcccCCC-CCCH---------HHHhhcccCCCCCeeEEEecc--Cc-ccchHHHHhcC
Q 025927 72 LGEQVKAVELAGCDWIHVDVMDGRFVPNI-TIGP---------LVVDALRPVTDLPLDVHLMIV--EP-EQRVPDFIKAG 138 (246)
Q Consensus 72 l~~~i~~l~~~g~d~lHiDIMDG~FVpN~-tfgp---------~~I~~ir~~t~~plDvHLMV~--~P-~~~i~~~~~ag 138 (246)
|.++++.|.+ |++||.+|= |.+ +-++ +.++.+.+ ++...+||.+. .+ ...++.+.+..
T Consensus 163 l~~e~~~L~~-G~~~IQiDE------P~L~~~~~~~~~~~~~~~a~~~~~~--~~~~~i~l~tyfg~~~~~~~~~l~~~~ 233 (326)
T PRK08575 163 VNSLIKELSS-VVDAVEIHE------PSIFAKGIKRDTLEKLPEVYKTMAK--NVNIEKHLMTYFEINNLKRLDILFSLP 233 (326)
T ss_pred HHHHHHHHHc-CCCEEEecC------cceeCCCCCHHHHHHHHHHHHHHHh--cCCCCEEEECCCCCccccHHHHHhcCC
Confidence 3466666666 999999993 333 2222 22333322 22445666666 21 24788889889
Q ss_pred CCEEEEccCCcc-cccHHHHHHHHHHcCCcEEEEEcCCCChHHHHHhhhhcceEE-----EEeecCCCCCCcccHH--HH
Q 025927 139 ADIVSVHCEQSS-TIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVL-----IMSVNPGFGGQSFIES--QV 210 (246)
Q Consensus 139 ad~It~H~E~~~-~~~~~~~i~~Ik~~G~k~GlAlnP~Tpve~l~~~l~~vD~VL-----vMsV~PGfgGQ~F~~~--~l 210 (246)
+|.+.+ |... ..++..+.+......+-+|+.=--+|-+|..+++.+.+...+ -+-|.|-+ |=.|+|. +.
T Consensus 234 vd~l~l--d~~~~~~~l~~~~~~~~~k~l~~GviD~rn~~vE~~eev~~~i~~~~~~~~~~l~v~pdc-gl~~lp~~~a~ 310 (326)
T PRK08575 234 VTYFGI--DVIENLKKLGRVYTYLKGRKVYLGILNARNTKMEKISTIRRIVNKVKRKGVSDIIVGNNT-LFDFIPEVVAV 310 (326)
T ss_pred CcEEEE--EecCChhHHHHHHhhCCCCEEEEEEEeCCCCCCCCHHHHHHHHHHHHhcCCCeEEEeCCC-CcccCcHHHHH
Confidence 998665 4321 122333322221122445666555677766666554433333 35566654 4556655 45
Q ss_pred HHHHHHHHH
Q 025927 211 KKISDLRRM 219 (246)
Q Consensus 211 ~KI~~lr~l 219 (246)
+|++.+.+.
T Consensus 311 ~KL~~l~~~ 319 (326)
T PRK08575 311 KKLKLLGKL 319 (326)
T ss_pred HHHHHHHHH
Confidence 566655443
No 489
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=64.58 E-value=19 Score=32.98 Aligned_cols=76 Identities=12% Similarity=0.115 Sum_probs=43.9
Q ss_pred HHHHHHHHHcC--CcEEEEEcCCCChHHHHHhh-hhcceEEEEeecCCCCCCcccHHHHHHHHHHHHHHHhcCCCCeEEE
Q 025927 155 HRTLNQIKDLG--AKAGVVLNPATSLSAIECVL-DVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV 231 (246)
Q Consensus 155 ~~~i~~Ik~~G--~k~GlAlnP~Tpve~l~~~l-~~vD~VLvMsV~PGfgGQ~F~~~~l~KI~~lr~l~~~~~~~~~I~V 231 (246)
.+.++.+|+.. .++|+-. .|. +++...+ .-+|+|.+=.+ .|+.++ ++.+.+.+...+..+++
T Consensus 171 ~~av~~~R~~~~~~~IgVev--~t~-eea~~A~~~gaD~I~ld~~---------~p~~l~---~~~~~~~~~~~~i~i~A 235 (272)
T cd01573 171 LKALARLRATAPEKKIVVEV--DSL-EEALAAAEAGADILQLDKF---------SPEELA---ELVPKLRSLAPPVLLAA 235 (272)
T ss_pred HHHHHHHHHhCCCCeEEEEc--CCH-HHHHHHHHcCCCEEEECCC---------CHHHHH---HHHHHHhccCCCceEEE
Confidence 45666677543 4555554 444 4444433 34788776322 333333 33333333223578999
Q ss_pred eCCCChhhhhhccc
Q 025927 232 DGGVGPKNAYKVPN 245 (246)
Q Consensus 232 DGGI~~e~i~~l~~ 245 (246)
=||||.+|+.++.+
T Consensus 236 sGGI~~~ni~~~~~ 249 (272)
T cd01573 236 AGGINIENAAAYAA 249 (272)
T ss_pred ECCCCHHHHHHHHH
Confidence 99999999998754
No 490
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=64.02 E-value=1.3e+02 Score=28.31 Aligned_cols=142 Identities=20% Similarity=0.232 Sum_probs=86.1
Q ss_pred cCcccCCCCC---CHH-HHhhccc-CCCCCeeEEEecc-------CcccchHHHHhcC--CCEEEEccC-----Cc----
Q 025927 93 DGRFVPNITI---GPL-VVDALRP-VTDLPLDVHLMIV-------EPEQRVPDFIKAG--ADIVSVHCE-----QS---- 149 (246)
Q Consensus 93 DG~FVpN~tf---gp~-~I~~ir~-~t~~plDvHLMV~-------~P~~~i~~~~~ag--ad~It~H~E-----~~---- 149 (246)
|.-+.+.++| |.+ +++.+++ ..+.|+-+=+... .+++|.+.+.+++ ||++.+-+= ..
T Consensus 107 ~~~~iN~~Gl~n~G~~~~l~~i~~~~~~~~i~vsi~~~~~~~~~~~~~dy~~~~~~~~~~ad~iElNlScPn~~~~~~~~ 186 (335)
T TIGR01036 107 DEALINRMGFNNHGADVLVERLKRARYKGPIGINIGKNKDTPSEDAKEDYAACLRKLGPLADYLVVNVSSPNTPGLRDLQ 186 (335)
T ss_pred ccccccCCCCCChhHHHHHHHHhhccCCCcEEEEEeCCCCCCcccCHHHHHHHHHHHhhhCCEEEEEccCCCCCCccccc
Confidence 4556666777 333 3555544 2345655555433 3577887777777 999888331 10
Q ss_pred ccccHHHHHHHHHHc--------CCcEEEEEcCCCChHHHHHhhh-----hcceEEEEee--------------c-CCCC
Q 025927 150 STIHLHRTLNQIKDL--------GAKAGVVLNPATSLSAIECVLD-----VVDLVLIMSV--------------N-PGFG 201 (246)
Q Consensus 150 ~~~~~~~~i~~Ik~~--------G~k~GlAlnP~Tpve~l~~~l~-----~vD~VLvMsV--------------~-PGfg 201 (246)
..+.+.++++.+|+. .+-+.+=|.|+.+.+.+..+.. -+|-|.+--. . -|.+
T Consensus 187 ~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlS 266 (335)
T TIGR01036 187 YKAELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDLTESDLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLS 266 (335)
T ss_pred CHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCCccc
Confidence 012345666666643 2678888999987544544443 2677665321 1 2567
Q ss_pred CCcccHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCh
Q 025927 202 GQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP 237 (246)
Q Consensus 202 GQ~F~~~~l~KI~~lr~l~~~~~~~~~I~VDGGI~~ 237 (246)
|.+..|-+++.++++++..+. ++.|.-=|||..
T Consensus 267 G~~i~p~al~~v~~~~~~~~~---~ipiig~GGI~~ 299 (335)
T TIGR01036 267 GKPLQDKSTEIIRRLYAELQG---RLPIIGVGGISS 299 (335)
T ss_pred CHHHHHHHHHHHHHHHHHhCC---CCCEEEECCCCC
Confidence 888999999999888876532 355666788853
No 491
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=63.92 E-value=58 Score=29.41 Aligned_cols=127 Identities=22% Similarity=0.231 Sum_probs=71.7
Q ss_pred ccChhhHHHHHHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHh-c-CCCEEE
Q 025927 66 SANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIK-A-GADIVS 143 (246)
Q Consensus 66 ~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~-a-gad~It 143 (246)
..|+..+.+.++.+.+.|++.+=+==.=|.| .++..+.-.++ ++..++ + |---|.
T Consensus 18 ~id~~~~~~~i~~l~~~Gv~gl~~~GstGE~---~~Lt~~Er~~l--------------------~~~~~~~~~~~~~vi 74 (289)
T PF00701_consen 18 SIDEDALKRLIDFLIEAGVDGLVVLGSTGEF---YSLTDEERKEL--------------------LEIVVEAAAGRVPVI 74 (289)
T ss_dssp SB-HHHHHHHHHHHHHTTSSEEEESSTTTTG---GGS-HHHHHHH--------------------HHHHHHHHTTSSEEE
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECCCCccc---ccCCHHHHHHH--------------------HHHHHHHccCceEEE
Confidence 4688999999999999997765433222222 33443333322 222222 1 112355
Q ss_pred EccCCcccccHHHHHHHHHHcCCcEEEEEcCCC---Ch----HHHHHhhhhcceEEEEeecCCCCCCcccHHHHHHHHH
Q 025927 144 VHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPAT---SL----SAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISD 215 (246)
Q Consensus 144 ~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~T---pv----e~l~~~l~~vD~VLvMsV~PGfgGQ~F~~~~l~KI~~ 215 (246)
+++-+.++.+..+..+..++.|+.+-+++.|.. +- +.++.+.+..|.=+++--.|+..|-.+.++++.++.+
T Consensus 75 ~gv~~~st~~~i~~a~~a~~~Gad~v~v~~P~~~~~s~~~l~~y~~~ia~~~~~pi~iYn~P~~tg~~ls~~~l~~L~~ 153 (289)
T PF00701_consen 75 AGVGANSTEEAIELARHAQDAGADAVLVIPPYYFKPSQEELIDYFRAIADATDLPIIIYNNPARTGNDLSPETLARLAK 153 (289)
T ss_dssp EEEESSSHHHHHHHHHHHHHTT-SEEEEEESTSSSCCHHHHHHHHHHHHHHSSSEEEEEEBHHHHSSTSHHHHHHHHHT
T ss_pred ecCcchhHHHHHHHHHHHhhcCceEEEEeccccccchhhHHHHHHHHHHhhcCCCEEEEECCCccccCCCHHHHHHHhc
Confidence 555443345566667777788887777777752 22 2333334456666667777877777777777766553
No 492
>PF00215 OMPdecase: Orotidine 5'-phosphate decarboxylase / HUMPS family; InterPro: IPR001754 Orotidine 5'-phosphate decarboxylase (OMPdecase) [, ] catalyses the last step in the de novo biosynthesis of pyrimidines, the decarboxylation of OMP into UMP. In higher eukaryotes OMPdecase is part, with orotate phosphoribosyltransferase, of a bifunctional enzyme, while the prokaryotic and fungal OMPdecases are monofunctional protein. Some parts of the sequence of OMPdecase are well conserved across species. The best conserved region is located in the N-terminal half of OMPdecases and is centred around a lysine residue which is essential for the catalytic function of the enzyme. This entry also includes enzymes such as 3-hexulose-6-phosphate synthase 4.1.2.43 from EC and 3-keto-L-gulonate-6-phosphate decarboxylase 4.1.1.85 from EC.; GO: 0004590 orotidine-5'-phosphate decarboxylase activity, 0006207 'de novo' pyrimidine base biosynthetic process; PDB: 2YYT_D 2YYU_B 3RU6_D 2CZE_B 2CZ5_B 2CZF_A 2CZD_A 3R89_A 2ZCG_A 2ZA1_A ....
Probab=63.89 E-value=19 Score=31.55 Aligned_cols=113 Identities=20% Similarity=0.228 Sum_probs=66.3
Q ss_pred ecccChhhHHHHHHHHHHcC--CCEEEeeeccCcccCCCCCC----HHHHhhcccCC-CCCeeEEEeccCcc---cchH-
Q 025927 64 ILSANFAKLGEQVKAVELAG--CDWIHVDVMDGRFVPNITIG----PLVVDALRPVT-DLPLDVHLMIVEPE---QRVP- 132 (246)
Q Consensus 64 Il~aD~~~l~~~i~~l~~~g--~d~lHiDIMDG~FVpN~tfg----p~~I~~ir~~t-~~plDvHLMV~~P~---~~i~- 132 (246)
.++.|..++++-++.+++.+ ++++=+=. .| -..+| ++.++.+|+.. .+.+|.=++ .=|. ++++
T Consensus 4 ~vALD~~~~~~a~~i~~~~~~~v~~iKvG~---~l--~~~~G~~~l~~~i~~l~~~~~~I~~D~K~~-Dig~t~~~~~~~ 77 (226)
T PF00215_consen 4 QVALDPTDLEEALRIADELGDYVDIIKVGT---PL--FLAYGLEALPEIIEELKERGKPIFLDLKLG-DIGNTVARYAEA 77 (226)
T ss_dssp EEEE-SSSHHHHHHHHHHHGGGSSEEEEEH---HH--HHHHCHHHHHHHHHHHHHTTSEEEEEEEE--SSHHHHHHHHHS
T ss_pred EEEeCCCCHHHHHHHHHHhcCcceEEEECh---HH--HhcCChhhHHHHHHHHHHhcCCEeeeeeec-ccchHHHHHHHH
Confidence 35667777766666655542 44432210 01 13679 99999998874 345666555 3333 2333
Q ss_pred --HHHhcCCCEEEEccCCcccccHHHHHHHHHHcC--CcEEEEEcCCCChHHHHH
Q 025927 133 --DFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLG--AKAGVVLNPATSLSAIEC 183 (246)
Q Consensus 133 --~~~~agad~It~H~E~~~~~~~~~~i~~Ik~~G--~k~GlAlnP~Tpve~l~~ 183 (246)
.+.+.|+|.+|+|.-+ ..+-+..+++..++.| ...+|.+--....+.+..
T Consensus 78 ~~~~~~~gaD~vTv~~~~-G~~tl~~~~~~a~~~~~~~~~~v~~~s~~~~~~~~~ 131 (226)
T PF00215_consen 78 GFAAFELGADAVTVHPFA-GDDTLEAAVKAAKKHGRKGVFVVDLLSNPDSEDLQD 131 (226)
T ss_dssp CHHHHTTTESEEEEEGTT-HHHHHHHHHHHHHHTTESEEEEEESTTSTTHHHHHH
T ss_pred hhhhhcCCCcEEEEeccC-CHHHHHHHHHHHhccCCcceEEEEecCCCCHHHHHh
Confidence 2357899999999875 2345677888888888 445555554444444444
No 493
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=63.85 E-value=99 Score=28.63 Aligned_cols=91 Identities=10% Similarity=0.048 Sum_probs=49.1
Q ss_pred EEEEccCCcccccHHHHHHHHHHcCCcEEEEEcCCCCh--HHHHHhhhhcceEE-------EEeecCCCCCCc--ccHHH
Q 025927 141 IVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSL--SAIECVLDVVDLVL-------IMSVNPGFGGQS--FIESQ 209 (246)
Q Consensus 141 ~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tpv--e~l~~~l~~vD~VL-------vMsV~PGfgGQ~--F~~~~ 209 (246)
..++..|. -.++.++++++|+.|+|+-+.++|.-.. ..+++..+ -++.+ ...+-||.++-. ++|++
T Consensus 57 ~f~~d~~~--FPdp~~mi~~L~~~G~kv~~~i~P~v~~~~~~y~e~~~-~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a 133 (319)
T cd06591 57 EWKFDPER--FPDPKAMVRELHEMNAELMISIWPTFGPETENYKEMDE-KGYLIKTDRGPRVTMQFGGNTRFYDATNPEA 133 (319)
T ss_pred eEEEChhh--CCCHHHHHHHHHHCCCEEEEEecCCcCCCChhHHHHHH-CCEEEEcCCCCeeeeeCCCCccccCCCCHHH
Confidence 34555553 3567788888888888888887777443 22333322 12111 013345555432 56666
Q ss_pred HHHH-HHHHHHHHhcCCCCeEEEeCCC
Q 025927 210 VKKI-SDLRRMCLEKGVNPWIEVDGGV 235 (246)
Q Consensus 210 l~KI-~~lr~l~~~~~~~~~I~VDGGI 235 (246)
.+=- .++++.+.+.|.+ -+..|+|-
T Consensus 134 ~~w~~~~~~~~~~~~Gvd-g~w~D~~E 159 (319)
T cd06591 134 REYYWKQLKKNYYDKGVD-AWWLDAAE 159 (319)
T ss_pred HHHHHHHHHHHhhcCCCc-EEEecCCC
Confidence 5542 3455555555554 26677773
No 494
>PLN02623 pyruvate kinase
Probab=63.80 E-value=43 Score=34.37 Aligned_cols=89 Identities=12% Similarity=0.200 Sum_probs=64.9
Q ss_pred hHHHHhcCCCEEEEccCCcccccHHHHHHHHHHcCCcEEEEEcCCCC--hHHHHHhhhhcceEEE----EeecCCCCCCc
Q 025927 131 VPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS--LSAIECVLDVVDLVLI----MSVNPGFGGQS 204 (246)
Q Consensus 131 i~~~~~agad~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~Tp--ve~l~~~l~~vD~VLv----MsV~PGfgGQ~ 204 (246)
++.-++.|+|+|.+=+=. ...++..+-+++++.|....+...-+|+ ++.+++++..+|.|+| ++++-|+
T Consensus 284 i~f~~~~~vD~ialSFVr-~a~DV~~~r~~l~~~~~~~~iiakIEt~eaVeNldeIl~g~DgImIgrgDLgvelg~---- 358 (581)
T PLN02623 284 IKFGVENKVDFYAVSFVK-DAQVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPI---- 358 (581)
T ss_pred HHHHHHcCCCEEEECCCC-CHHHHHHHHHHHHHcCCcceEEEEECCHHHHHhHHHHHHhCCEEEECcchhhhhcCc----
Confidence 444577899999876532 2357777888888888777777777765 4889999999999988 5666555
Q ss_pred ccHHHHHHHHHHHHHHHhcCCC
Q 025927 205 FIESQVKKISDLRRMCLEKGVN 226 (246)
Q Consensus 205 F~~~~l~KI~~lr~l~~~~~~~ 226 (246)
|++..-++++-+.+.+.|..
T Consensus 359 --~~v~~~qk~Ii~~~~~~gKp 378 (581)
T PLN02623 359 --EEVPLLQEEIIRRCRSMGKP 378 (581)
T ss_pred --HHHHHHHHHHHHHHHHhCCC
Confidence 66666666666666666653
No 495
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=63.77 E-value=1.2e+02 Score=27.83 Aligned_cols=145 Identities=13% Similarity=0.175 Sum_probs=86.7
Q ss_pred HHHHHHcCCCEEEeeeccCcccCCCCCCHHHHhhcccCCCCCeeEEEeccCcccchHHHHhcCCCEE-EEccCCcccccH
Q 025927 76 VKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIV-SVHCEQSSTIHL 154 (246)
Q Consensus 76 i~~l~~~g~d~lHiDIMDG~FVpN~tfgp~~I~~ir~~t~~plDvHLMV~~P~~~i~~~~~agad~I-t~H~E~~~~~~~ 154 (246)
.+.+-.+|.||+=+|.-=|.|-.. +. ...+.+++. ++..--|-+=..+| .++....++||+-| .-|+|+ .++.
T Consensus 32 ~E~~a~~GfD~v~iD~EHg~~~~~-~l-~~~i~a~~~-~g~~~lVRvp~~~~-~~i~r~LD~GA~GIivP~V~s--aeeA 105 (267)
T PRK10128 32 AEIAATSGYDWLLIDGEHAPNTIQ-DL-YHQLQAIAP-YASQPVIRPVEGSK-PLIKQVLDIGAQTLLIPMVDT--AEQA 105 (267)
T ss_pred HHHHHHcCCCEEEEccccCCCCHH-HH-HHHHHHHHh-cCCCeEEECCCCCH-HHHHHHhCCCCCeeEecCcCC--HHHH
Confidence 455667899999999998866221 11 123334442 34433333322233 46778899999954 556774 4556
Q ss_pred HHHHHHHHH---------------------------cCCcEEEEEcCCCC--hHHHHHhhh--hcceEEE----EeecCC
Q 025927 155 HRTLNQIKD---------------------------LGAKAGVVLNPATS--LSAIECVLD--VVDLVLI----MSVNPG 199 (246)
Q Consensus 155 ~~~i~~Ik~---------------------------~G~k~GlAlnP~Tp--ve~l~~~l~--~vD~VLv----MsV~PG 199 (246)
.++++..|= .+-..-+.+.-+|+ ++.+++++. -+|.+.+ ++..=|
T Consensus 106 ~~~V~a~rYpP~G~Rg~g~~~~r~~~yg~~~~y~~~an~~~~vi~qiEt~~a~~n~~~I~~~~gvd~i~~G~~Dls~slg 185 (267)
T PRK10128 106 RQVVSATRYPPYGERGVGASVARAARWGRIENYMAQANDSLCLLVQVESKTALDNLDEILDVEGIDGVFIGPADLSASLG 185 (267)
T ss_pred HHHHHhcCCCCCCCCCCCCccchhhccCChHHHHHHhccccEEEEEECCHHHHHhHHHHhCCCCCCEEEECHHHHHHHcC
Confidence 666655541 11122222222333 355566543 3677666 344447
Q ss_pred CCCCcccHHHHHHHHHHHHHHHhcCCC
Q 025927 200 FGGQSFIESQVKKISDLRRMCLEKGVN 226 (246)
Q Consensus 200 fgGQ~F~~~~l~KI~~lr~l~~~~~~~ 226 (246)
..||.-.|+..+.++++.+...++|.-
T Consensus 186 ~~~~~~~pev~~ai~~v~~a~~~~Gk~ 212 (267)
T PRK10128 186 YPDNAGHPEVQRIIETSIRRIRAAGKA 212 (267)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCe
Confidence 889999999999999999998888764
No 496
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=63.71 E-value=1.1e+02 Score=28.43 Aligned_cols=82 Identities=15% Similarity=0.059 Sum_probs=46.8
Q ss_pred cccHHHHHHHHHHcCCcEEEEEcCCCCh--HHHHHhhhhcce---------EEEEeecCCCCCCc--ccHHHHHHHHHHH
Q 025927 151 TIHLHRTLNQIKDLGAKAGVVLNPATSL--SAIECVLDVVDL---------VLIMSVNPGFGGQS--FIESQVKKISDLR 217 (246)
Q Consensus 151 ~~~~~~~i~~Ik~~G~k~GlAlnP~Tpv--e~l~~~l~~vD~---------VLvMsV~PGfgGQ~--F~~~~l~KI~~lr 217 (246)
-+++..+++.+|+.|+|+-+.++|.... +.+++.. .-++ ..++.+-||.++-. ++|++.+=-.+..
T Consensus 69 FPdp~~mi~~L~~~G~k~~~~v~P~v~~~~~~y~e~~-~~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~ 147 (317)
T cd06598 69 FPDPAGMIADLAKKGVKTIVITEPFVLKNSKNWGEAV-KAGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNY 147 (317)
T ss_pred CCCHHHHHHHHHHcCCcEEEEEcCcccCCchhHHHHH-hCCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHH
Confidence 4678899999999999999999988544 3333322 2222 23344555554433 5666654333322
Q ss_pred HHHHhcCCCCeEEEeCC
Q 025927 218 RMCLEKGVNPWIEVDGG 234 (246)
Q Consensus 218 ~l~~~~~~~~~I~VDGG 234 (246)
+...+.|.+. +..|.|
T Consensus 148 ~~~~~~Gvdg-~w~D~~ 163 (317)
T cd06598 148 KKLIDQGVTG-WWGDLG 163 (317)
T ss_pred HHhhhCCccE-EEecCC
Confidence 2223445432 566665
No 497
>cd08213 RuBisCO_large_III Ribulose bisphosphate carboxylase large chain, Form III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form III is only found in archaea and forms large subunit oligomers (dimers or decamers) that do not include small subunits.
Probab=63.63 E-value=9.5 Score=37.31 Aligned_cols=117 Identities=16% Similarity=0.218 Sum_probs=78.5
Q ss_pred cceeccccCCCCCCceeccccceeeeeeccccccCCCCCcEEeeeecccChhhHHHHHHHHHHcCCCEEEeeeccCcccC
Q 025927 19 GFMLQKTNLNQPSSLSFTRRRIQTIVKASARVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVP 98 (246)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IsPSIl~aD~~~l~~~i~~l~~~g~d~lHiDIMDG~FVp 98 (246)
++.-.+-++..++- .--+.|++.+..|-.|..+-......-+|-| +++...+.+..+.+.+.|++.+.+|++
T Consensus 162 D~iKDDE~l~~q~~-~p~~~Rv~~~~~a~~~a~~eTG~~~~y~~Ni-T~~~~em~~ra~~a~e~G~~~~mv~~~------ 233 (412)
T cd08213 162 DLVKDDENLTSQPF-NRFEERAKESLKARDKAEAETGERKAYLANI-TAPVREMERRAELVADLGGKYVMIDVV------ 233 (412)
T ss_pred cccccCccCCCCCC-CCHHHHHHHHHHHHHHHHHhhCCcceEEEEe-cCCHHHHHHHHHHHHHhCCCeEEeecc------
Confidence 55555555544443 3345566666666655555444456667774 578999999999999999999998875
Q ss_pred CCCCCHHHHhhccc---CCCCCeeEE-----EeccCccc------chHHHHhcCCCEEEEc
Q 025927 99 NITIGPLVVDALRP---VTDLPLDVH-----LMIVEPEQ------RVPDFIKAGADIVSVH 145 (246)
Q Consensus 99 N~tfgp~~I~~ir~---~t~~plDvH-----LMV~~P~~------~i~~~~~agad~It~H 145 (246)
+.|...+..|++ ..++|+..| .|..+|.. +-+.+.-+|+|.+.+.
T Consensus 234 --~~G~~~l~~l~~~~~~~~l~ihaHra~~ga~~r~~~~Gis~~~l~kl~RLaGaD~ih~~ 292 (412)
T cd08213 234 --VAGWSALQYLRDLAEDYGLAIHAHRAMHAAFTRNPRHGISMLVLAKLYRLIGVDQLHIG 292 (412)
T ss_pred --ccChHHHHHHHHhccccCeEEEECCCcceecccCCcCcCcHHHHHHHHHHcCCCccccC
Confidence 445567888876 346888887 45555552 2233345899998887
No 498
>PRK10812 putative DNAse; Provisional
Probab=63.62 E-value=38 Score=30.75 Aligned_cols=99 Identities=15% Similarity=0.157 Sum_probs=61.8
Q ss_pred CCCCeeEEEeccCcccchHHHHhcCCC--EEEEccCCcccccHHHHHHHHHHcCCcEEEEEcCCC-ChHHHHHhhhhc--
Q 025927 114 TDLPLDVHLMIVEPEQRVPDFIKAGAD--IVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPAT-SLSAIECVLDVV-- 188 (246)
Q Consensus 114 t~~plDvHLMV~~P~~~i~~~~~agad--~It~H~E~~~~~~~~~~i~~Ik~~G~k~GlAlnP~T-pve~l~~~l~~v-- 188 (246)
+++|+-+|.- .--...++.+.+.+.+ .+.+|.-+ .+ .+..+.+-+.|+..|+.-.... .-+.+.+++..+
T Consensus 123 ~~~Pv~iH~r-~a~~~~l~iL~~~~~~~~~~v~H~fs---G~-~~~a~~~~~~G~~is~~g~~t~~~~~~~~~~~~~ipl 197 (265)
T PRK10812 123 LNKPVIVHTR-DARADTLAILREEKVTDCGGVLHCFT---ED-RETAGKLLDLGFYISFSGIVTFRNAEQLRDAARYVPL 197 (265)
T ss_pred hCCCeEEEee-CchHHHHHHHHhhcCCCCCEEEEeec---CC-HHHHHHHHHCCCEEEECeeeecCccHHHHHHHHhCCh
Confidence 5899999953 3333556666655443 45699874 22 2456666778999988744332 345677777665
Q ss_pred ceEEEEeecCC-----CCCC----cccHHHHHHHHHHH
Q 025927 189 DLVLIMSVNPG-----FGGQ----SFIESQVKKISDLR 217 (246)
Q Consensus 189 D~VLvMsV~PG-----fgGQ----~F~~~~l~KI~~lr 217 (246)
|.+|+=|=-|- +.|+ .+++.++++|.++|
T Consensus 198 drlLlETD~P~~~p~~~~g~~n~P~~i~~v~~~ia~l~ 235 (265)
T PRK10812 198 DRLLVETDSPYLAPVPHRGKENQPAMVRDVAEYMAVLK 235 (265)
T ss_pred hhEEEecCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHh
Confidence 88888665552 3343 36666667776654
No 499
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=63.31 E-value=75 Score=30.23 Aligned_cols=121 Identities=21% Similarity=0.279 Sum_probs=71.5
Q ss_pred hHHHHHHHHHHcCCCEEEeeeccCcccCCC-CCCHHHHhhcccCCCCCeeEEEeccCcc---cchHHHHhcCCCEEEEcc
Q 025927 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNI-TIGPLVVDALRPVTDLPLDVHLMIVEPE---QRVPDFIKAGADIVSVHC 146 (246)
Q Consensus 71 ~l~~~i~~l~~~g~d~lHiDIMDG~FVpN~-tfgp~~I~~ir~~t~~plDvHLMV~~P~---~~i~~~~~agad~It~H~ 146 (246)
.+.+-++...+.|++-+-+= =|. |-+ ..=+++|+.|+++ ...|+ -|+.|=. ++...+.+||-+.|.+++
T Consensus 47 ei~~~~~~~~~~Gv~kvRlT--GGE--PllR~dl~eIi~~l~~~--~~~~i-slTTNG~~L~~~a~~Lk~AGl~rVNVSL 119 (322)
T COG2896 47 EIRRLVRAFAELGVEKVRLT--GGE--PLLRKDLDEIIARLARL--GIRDL-SLTTNGVLLARRAADLKEAGLDRVNVSL 119 (322)
T ss_pred HHHHHHHHHHHcCcceEEEe--CCC--chhhcCHHHHHHHHhhc--ccceE-EEecchhhHHHHHHHHHHcCCcEEEeec
Confidence 44455555556677765431 110 111 0112355555554 22233 3444654 788899999999999999
Q ss_pred CCcccc---------cHHHHHHH---HHHcC---CcEEEEEcCCCChHHHHHhhh-------hcceEEEEeecC
Q 025927 147 EQSSTI---------HLHRTLNQ---IKDLG---AKAGVVLNPATSLSAIECVLD-------VVDLVLIMSVNP 198 (246)
Q Consensus 147 E~~~~~---------~~~~~i~~---Ik~~G---~k~GlAlnP~Tpve~l~~~l~-------~vD~VLvMsV~P 198 (246)
+++..+ .+.++++- ..+.| +|+-.++-++....++.++++ .+-+|.+|-+..
T Consensus 120 Dsld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~pVKlN~Vv~kgvNd~ei~~l~e~~~~~~~~lrfIE~m~~g~ 193 (322)
T COG2896 120 DSLDPEKFRKITGRDRLDRVLEGIDAAVEAGLTPVKLNTVLMKGVNDDEIEDLLEFAKERGAQLRFIELMPLGE 193 (322)
T ss_pred ccCCHHHHHHHhCCCcHHHHHHHHHHHHHcCCCceEEEEEEecCCCHHHHHHHHHHHhhcCCceEEEEEeecCc
Confidence 975211 12334433 44555 567888888988888888775 366788887754
No 500
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=63.20 E-value=64 Score=28.43 Aligned_cols=129 Identities=13% Similarity=0.070 Sum_probs=72.3
Q ss_pred hhHHHHHHHHHHcCCCEEEeeeccCcccC-CCCCCHHHHhhcccC---CCCCee-----EEE----eccCc---------
Q 025927 70 AKLGEQVKAVELAGCDWIHVDVMDGRFVP-NITIGPLVVDALRPV---TDLPLD-----VHL----MIVEP--------- 127 (246)
Q Consensus 70 ~~l~~~i~~l~~~g~d~lHiDIMDG~FVp-N~tfgp~~I~~ir~~---t~~plD-----vHL----MV~~P--------- 127 (246)
.-+.+.++.+.+.|.+.+=+.+-+.+--+ -..++...++++++. .++.+. .|. -..+|
T Consensus 16 ~~~~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~~~~~~~~~~~~~~~~d~~~r~~~~~~ 95 (284)
T PRK13210 16 LSWEERLVFAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYETGVRIPSMCLSGHRRFPFGSRDPATRERALEI 95 (284)
T ss_pred CCHHHHHHHHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHcCCCceEEecccccCcCCCCCCHHHHHHHHHH
Confidence 46788999999999999988765543211 234556666666542 344432 221 11233
Q ss_pred -ccchHHHHhcCCCEEEEccC-----Ccc-------cccHHHHHHHHHHcCCcEEEEEcCCC---ChHHHHHhhhhcc--
Q 025927 128 -EQRVPDFIKAGADIVSVHCE-----QSS-------TIHLHRTLNQIKDLGAKAGVVLNPAT---SLSAIECVLDVVD-- 189 (246)
Q Consensus 128 -~~~i~~~~~agad~It~H~E-----~~~-------~~~~~~~i~~Ik~~G~k~GlAlnP~T---pve~l~~~l~~vD-- 189 (246)
.+.++...+.|+++|.++.- ... ...+.++....++.|++.++=-.+.. +.+.+..+++.++
T Consensus 96 ~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~~~~~~~~~~~~~~~l~~~v~~~ 175 (284)
T PRK13210 96 MKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVMLAVEIMDTPFMNSISKWKKWDKEIDSP 175 (284)
T ss_pred HHHHHHHHHHhCCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCCEEEEEecCccccCCHHHHHHHHHHcCCC
Confidence 23444556679999998621 000 11245566667778887776443332 2345556666553
Q ss_pred eEEEEeecCC
Q 025927 190 LVLIMSVNPG 199 (246)
Q Consensus 190 ~VLvMsV~PG 199 (246)
.+ -+..++|
T Consensus 176 ~~-~~~~D~~ 184 (284)
T PRK13210 176 WL-TVYPDVG 184 (284)
T ss_pred ce-eEEecCC
Confidence 33 3445665
Done!