RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 025927
(246 letters)
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin
cycle, oxidative pentose PH pathway; 2.30A {Solanum
tuberosum} SCOP: c.1.2.2
Length = 230
Score = 372 bits (958), Expect = e-133
Identities = 177/196 (90%), Positives = 189/196 (96%)
Query: 48 ARVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVV 107
+RVDKFSKSDIIVSPSILSANF+KLGEQVKA+E AGCDWIHVDVMDGRFVPNITIGPLVV
Sbjct: 1 SRVDKFSKSDIIVSPSILSANFSKLGEQVKAIEQAGCDWIHVDVMDGRFVPNITIGPLVV 60
Query: 108 DALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAK 167
D+LRP+TDLPLDVHLMIVEP+QRVPDFIKAGADIVSVHCEQSSTIHLHRT+NQIK LGAK
Sbjct: 61 DSLRPITDLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQIKSLGAK 120
Query: 168 AGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNP 227
AGVVLNP T L+AIE VLD VDLVLIMSVNPGFGGQSFIESQVKKISDLR++C E+G+NP
Sbjct: 121 AGVVLNPGTPLTAIEYVLDAVDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNP 180
Query: 228 WIEVDGGVGPKNAYKV 243
WIEVDGGVGPKNAYKV
Sbjct: 181 WIEVDGGVGPKNAYKV 196
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase,
isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Length = 230
Score = 362 bits (932), Expect = e-129
Identities = 127/189 (67%), Positives = 157/189 (83%)
Query: 55 KSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVT 114
+I+V+PSILSA+F++LGE++KAV+ AG DWIHVDVMDGRFVPNITIGPL+VDA+RP+T
Sbjct: 2 SKNIVVAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPLT 61
Query: 115 DLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNP 174
LDVHLMIVEPE+ V DF KAGADI+SVH E +++ HLHRTL QI++LG KAG VLNP
Sbjct: 62 KKTLDVHLMIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNP 121
Query: 175 ATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGG 234
+T L +E VL V DL+LIMSVNPGFGGQSFI + KI LR+MC E+G++PWIEVDGG
Sbjct: 122 STPLDFLEYVLPVCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGG 181
Query: 235 VGPKNAYKV 243
+ P N ++V
Sbjct: 182 LKPNNTWQV 190
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol
5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus
pyogenes} SCOP: c.1.2.2
Length = 220
Score = 342 bits (880), Expect = e-121
Identities = 87/188 (46%), Positives = 130/188 (69%), Gaps = 2/188 (1%)
Query: 56 SDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTD 115
S + ++PSIL+A++A ++ +E +++H+D+MDG+FVPNI+ G VV ++R +
Sbjct: 2 STLKIAPSILAADYANFASELARIEETDAEYVHIDIMDGQFVPNISFGADVVASMRKHSK 61
Query: 116 LPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPA 175
L D HLM+V+PE+ V F +AGADI+++H E ST H+H L +IK G KAGVV+NP
Sbjct: 62 LVFDCHLMVVDPERYVEAFAQAGADIMTIHTE--STRHIHGALQKIKAAGMKAGVVINPG 119
Query: 176 TSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGV 235
T +A+E +LD+VD VLIM+VNPGFGGQ+FI ++K++ + + EKG++ IEVDGGV
Sbjct: 120 TPATALEPLLDLVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGV 179
Query: 236 GPKNAYKV 243
K
Sbjct: 180 DNKTIRAC 187
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc
genomics, center for structural genomics of infectious
DISE csgid; 2.05A {Francisella tularensis subsp}
Length = 246
Score = 340 bits (875), Expect = e-120
Identities = 83/198 (41%), Positives = 119/198 (60%), Gaps = 3/198 (1%)
Query: 47 SARVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLV 106
+ + I ++PSILSA+ A+LG+ VKAV AG D IH DVMD +VPN+T GP+V
Sbjct: 17 NLYFQSNAMKHIQINPSILSADLARLGDDVKAVLAAGADNIHFDVMDNHYVPNLTFGPMV 76
Query: 107 VDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLG 165
+ ALR +DVHLM+ + + F KAGA + H E ++ H+ R+L IK G
Sbjct: 77 LKALRDYGITAGMDVHLMVKPVDALIESFAKAGATSIVFHPE--ASEHIDRSLQLIKSFG 134
Query: 166 AKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGV 225
+AG+ LNPAT + ++ V +D VLIMSVNPGFGGQ FI + + K ++ +
Sbjct: 135 IQAGLALNPATGIDCLKYVESNIDRVLIMSVNPGFGGQKFIPAMLDKAKEISKWISSTDR 194
Query: 226 NPWIEVDGGVGPKNAYKV 243
+ +E+DGGV P N ++
Sbjct: 195 DILLEIDGGVNPYNIAEI 212
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate,
(beta/alpha)8 barrel, carbohydrate metabolism,
isomerase; HET: S6P; 2.20A {Escherichia coli} PDB:
3ct7_A*
Length = 231
Score = 333 bits (857), Expect = e-117
Identities = 60/186 (32%), Positives = 108/186 (58%), Gaps = 2/186 (1%)
Query: 58 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLP 117
+ +SPS++ + K EQ++ ++ + D+ H+D+MDG FVPN+T+ P V ++ + P
Sbjct: 1 MKISPSLMCMDLLKFKEQIEFID-SHADYFHIDIMDGHFVPNLTLSPFFVSQVKKLATKP 59
Query: 118 LDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS 177
LD HLM+ P+ + +AGAD +++H E + R +++I+ K G++LNP T
Sbjct: 60 LDCHLMVTRPQDYIAQLARAGADFITLHPE-TINGQAFRLIDEIRRHDMKVGLILNPETP 118
Query: 178 LSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP 237
+ A++ + D + +M+V+PGF GQ FI + K+++L+ +G+ IEVDG
Sbjct: 119 VEAMKYYIHKADKITVMTVDPGFAGQPFIPEMLDKLAELKAWREREGLEYEIEVDGSCNQ 178
Query: 238 KNAYKV 243
K+
Sbjct: 179 ATYEKL 184
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate
pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2
PDB: 1h1z_A
Length = 228
Score = 318 bits (818), Expect = e-111
Identities = 72/193 (37%), Positives = 107/193 (55%), Gaps = 8/193 (4%)
Query: 54 SKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV 113
+ + ++PS+LS++FA L + + G DW+H+D+MDG FVPN+TIG V+ +LR
Sbjct: 3 AAAAAKIAPSMLSSDFANLAAEADRMVRLGADWLHMDIMDGHFVPNLTIGAPVIQSLRKH 62
Query: 114 TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLN 173
T LD HLM+ P V KAGA + H E S + + IK G + GV L
Sbjct: 63 TKAYLDCHLMVTNPSDYVEPLAKAGASGFTFHIEVSRD-NWQELIQSIKAKGMRPGVSLR 121
Query: 174 PATSLSAIECVLDV---VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIE 230
P T + + +++ V+LVL+M+V PGFGGQ F+ ++K+ LR+ + IE
Sbjct: 122 PGTPVEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYP----SLDIE 177
Query: 231 VDGGVGPKNAYKV 243
VDGG+GP
Sbjct: 178 VDGGLGPSTIDVA 190
>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS
epimerase family, structural genomics, joint center for
STR genomics, JCSG; 1.91A {Haemophilus somnus}
Length = 237
Score = 314 bits (808), Expect = e-110
Identities = 44/199 (22%), Positives = 85/199 (42%), Gaps = 13/199 (6%)
Query: 54 SKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV 113
+S ILSAN+ +L E+V + + +H D+ DG+F T+G + +
Sbjct: 10 QLKQQKLSVGILSANWLQLNEEVTTLLENQINVLHFDIADGQFSSLFTVGAIGIKYFP-- 67
Query: 114 TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDL--------- 164
T DVHLM+ + + GA++V++ E T+ +
Sbjct: 68 THCFKDVHLMVRNQLEVAKAVVANGANLVTLQLE--QYHDFALTIEWLAKQKTTYANQVY 125
Query: 165 GAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKG 224
G L P T +S +E LD +D++ +++++P G + E + ++ + + +
Sbjct: 126 PVLIGACLCPETPISELEPYLDQIDVIQLLTLDPRNGTKYPSELILDRVIQVEKRLGNRR 185
Query: 225 VNPWIEVDGGVGPKNAYKV 243
V I +DG + + A
Sbjct: 186 VEKLINIDGSMTLELAKYF 204
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE;
1.70A {Homo sapiens} PDB: 3ovq_A* 3ovr_A* 3qc3_A
Length = 228
Score = 312 bits (803), Expect = e-109
Identities = 73/190 (38%), Positives = 110/190 (57%), Gaps = 8/190 (4%)
Query: 56 SDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-- 113
S + PSIL+++ A LG + + +G D++H+DVMDG FVPNIT G VV++LR
Sbjct: 3 SGCKIGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLG 62
Query: 114 TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLN 173
D D+H+M+ +PEQ V AGA+ + H E +T + + I++ G K G+ +
Sbjct: 63 QDPFFDMHMMVSKPEQWVKPMAVAGANQYTFHLE--ATENPGALIKDIRENGMKVGLAIK 120
Query: 174 PATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDG 233
P TS+ + + +D+ L+M+V PGFGGQ F+E + K+ LR + IEVDG
Sbjct: 121 PGTSVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFP----SLDIEVDG 176
Query: 234 GVGPKNAYKV 243
GVGP +K
Sbjct: 177 GVGPDTVHKC 186
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics,
protein structure initiative, PSI; 2.00A {Plasmodium
falciparum} SCOP: c.1.2.2
Length = 227
Score = 295 bits (757), Expect = e-102
Identities = 67/196 (34%), Positives = 111/196 (56%), Gaps = 13/196 (6%)
Query: 54 SKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV 113
I++PS+L++N +KL E+ + +E G +WIH+DVMD FVPN++ GP V++ L+
Sbjct: 2 GTLKAIIAPSVLASNISKLAEETQRMESLGAEWIHLDVMDMHFVPNLSFGPPVINNLKKY 61
Query: 114 T-DLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTL---NQIKDLGAKAG 169
T + DVHLM+ PE+ VP ++ ++ H E + R + +I+D G
Sbjct: 62 TKSIFFDVHLMVEYPEKYVPLL--KTSNQLTFHFE-ALNEDTERCIQLAKEIRDNNLWCG 118
Query: 170 VVLNPATSLSAIECVLD--VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNP 227
+ + P T + + +LD +++ VL+M+V PGFGGQSF+ + K+S LR+ N
Sbjct: 119 ISIKPKTDVQKLVPILDTNLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKYK----NL 174
Query: 228 WIEVDGGVGPKNAYKV 243
I+VDGG+ +
Sbjct: 175 NIQVDGGLNIETTEIS 190
>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A
{Streptococcus mutans} PDB: 3exs_A* 3ext_A
Length = 221
Score = 90.4 bits (224), Expect = 3e-22
Identities = 29/186 (15%), Positives = 63/186 (33%), Gaps = 15/186 (8%)
Query: 64 ILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHL 122
++ + + L + A G VDV++ V + +G +V+ LR + D +
Sbjct: 9 QVALDHSNLKGAITAAVSVGN---EVDVIEAGTVCLLQVGSELVEVLRSLFPDKIIVADT 65
Query: 123 MIVEPEQRVPD-FIKAGADIVSVHCE--QSSTIHLHRTLNQIKDLGAKAGV-VLNPATSL 178
+ V GAD ++ C + + + I + V + T
Sbjct: 66 KCADAGGTVAKNNAVRGADWMTCICSATIPTMKAARKAIEDINPDKGEIQVELYGDWTYD 125
Query: 179 SAIECVLDVVDLVLI-MSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP 237
A + + + + S + G+++ E + K+ L + + V GG+
Sbjct: 126 QAQQWLDAGISQAIYHQSRDALLAGETWGEKDLNKVKKLI------EMGFRVSVTGGLSV 179
Query: 238 KNAYKV 243
Sbjct: 180 DTLKLF 185
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A
{Mycobacterium gastri}
Length = 207
Score = 87.7 bits (217), Expect = 2e-21
Identities = 23/182 (12%), Positives = 56/182 (30%), Gaps = 12/182 (6%)
Query: 64 ILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHL 122
++ + ++ +VD+++ G V+ A++ D + +
Sbjct: 4 QVAIDLLSTEAALELAGKVAE---YVDIIELGTPLIKAEGLSVITAVKKAHPDKIVFADM 60
Query: 123 MIVEPEQRVPD-FIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAI 181
++ + D KAGAD+V+V + + + + V L +
Sbjct: 61 KTMDAGELEADIAFKAGADLVTVLGS-ADDSTIAGAVKAAQAHNKGVVVDLIGIEDKATR 119
Query: 182 ECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAY 241
+ + + ++ G Q+ + + + V GGV
Sbjct: 120 AQEVRALG-AKFVEMHAGLDEQAKPGFDLNGLLAAG-----EKARVPFSVAGGVKVATIP 173
Query: 242 KV 243
V
Sbjct: 174 AV 175
>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta
barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP:
c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A*
1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A*
1xbx_A*
Length = 216
Score = 87.0 bits (215), Expect = 4e-21
Identities = 27/171 (15%), Positives = 58/171 (33%), Gaps = 11/171 (6%)
Query: 77 KAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPD-F 134
A E VD+++ + + G V L+ + + I + + +
Sbjct: 17 SAYETTRLIAEEVDIIEVGTILCVGEGVRAVRDLKALYPHKIVLADAKIADAGKILSRMC 76
Query: 135 IKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSL-SAIECVLDVVDLVLI 193
+A AD V+V C + L+ K+ + L + A + + V+
Sbjct: 77 FEANADWVTVIC-CADINTAKGALDVAKEFNGDVQIELTGYWTWEQAQQWRDAGIGQVVY 135
Query: 194 -MSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKV 243
S + G ++ E+ + I L + + V GG+ ++
Sbjct: 136 HRSRDAQAAGVAWGEADITAIKRLS------DMGFKVTVTGGLALEDLPLF 180
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate
decarboxylase, ULAD, niaid,CSG bound, biosynthetic
protein; HET: MSE; 1.80A {Vibrio cholerae} PDB: 3ieb_A*
Length = 218
Score = 85.0 bits (210), Expect = 2e-20
Identities = 25/184 (13%), Positives = 62/184 (33%), Gaps = 14/184 (7%)
Query: 64 ILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHL 122
++ + L + V +VDV++ + G V LR + L +
Sbjct: 10 QIALDQTNLTDAVAVASNVAS---YVDVIEVGTILAFAEGMKAVSTLRHNHPNHILVCDM 66
Query: 123 MIVEPEQRV-PDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAI 181
+ + +AGAD ++V + + +L + + + ++
Sbjct: 67 KTTDGGAILSRMAFEAGADWITVSAA-AHIATIAACKKVADELNGEIQIEIYGNWTMQDA 125
Query: 182 ECVLD--VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKN 239
+ +D + + S + G + + K+ L + + + GG+ P++
Sbjct: 126 KAWVDLGITQAIYHRSRDAELAGIGWTTDDLDKMRQL------SALGIELSITGGIVPED 179
Query: 240 AYKV 243
Y
Sbjct: 180 IYLF 183
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase;
1.65A {Salmonella typhimurium}
Length = 211
Score = 71.4 bits (175), Expect = 2e-15
Identities = 25/180 (13%), Positives = 64/180 (35%), Gaps = 13/180 (7%)
Query: 64 ILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHL 122
L+ + L E + ++ VD+++ I G + A++ +
Sbjct: 4 QLALDELTLPEAMVFMDKVV---DDVDIIEVGTPFLIREGVNAIKAIKEKYPHKEVLADA 60
Query: 123 MIVEPEQRVPD-FIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGV-VLNPATSLSA 180
I++ AGAD V+V + + + + K+ G + V ++ +
Sbjct: 61 KIMDGGHFESQLLFDAGADYVTVLGV-TDVLTIQSCIRAAKEAGKQVVVDMICVDDLPAR 119
Query: 181 IECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNA 240
+ + + +++V+ G Q+ + + + ++ I V GG+ +
Sbjct: 120 VRLLEEAG--ADMLAVHTGTDQQAAGRKPIDDLITMLKVRR----KARIAVAGGISSQTV 173
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.9 bits (103), Expect = 3e-05
Identities = 41/201 (20%), Positives = 71/201 (35%), Gaps = 61/201 (30%)
Query: 30 PSSLSFTRRRIQTIVKASARVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHV 89
P++ F ++Q ++F+K + P+ FA E EL G
Sbjct: 23 PTASFFIASQLQ---------EQFNKI--LPEPT---EGFAADDEPTTPAELVG------ 62
Query: 90 DVMDGRFVPNITIGPLVVDALRPVTDLPLD--VHLMIVEPEQRVPDFIKAGADI--VSVH 145
+F +G V + P D ++L + E E +++ G DI ++
Sbjct: 63 -----KF-----LG-YVSSLVEPSKVGQFDQVLNLCLTEFEN---CYLE-GNDIHALAAK 107
Query: 146 CEQSSTIHLHRTLNQIKDLGAKAGVVLN---PATSLSAIECVLDVVDLVLIMSVNPG--- 199
Q + L +T IK+ A ++ S SA L +V G
Sbjct: 108 LLQENDTTLVKTKELIKNY-ITARIMAKRPFDKKSNSA-----------LFRAVGEGNAQ 155
Query: 200 ----FGGQSFIESQVKKISDL 216
FGGQ + +++ DL
Sbjct: 156 LVAIFGGQGNTDDYFEELRDL 176
Score = 42.7 bits (100), Expect = 8e-05
Identities = 42/228 (18%), Positives = 68/228 (29%), Gaps = 69/228 (30%)
Query: 61 SP--SILSANFAKLGEQVKAV--ELAGCDWIHVDVMDGR--FVPNITIGP---L--VVDA 109
SP SI + ++ + V L + + +++G V ++ GP L +
Sbjct: 336 SPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV--VS-GPPQSLYGLNLT 392
Query: 110 LRPVTDLP-LDVHLMIVEPEQRVPDFIKAGADIVSV--HCEQSSTIHLHRTLNQI-KDLG 165
LR LD + +R F + + H L + I KDL
Sbjct: 393 LRKAKAPSGLDQSR--IPFSERKLKFSNRFLPV-ASPFHSH-----LLVPASDLINKDL- 443
Query: 166 AKAGVVLNPA--------T-------SLSAIECVLDVVDLVLIMSVN-P----------- 198
K V N T LS +VD ++ + V
Sbjct: 444 VKNNVSFNAKDIQIPVYDTFDGSDLRVLSG-SISERIVDCIIRLPVKWETTTQFKATHIL 502
Query: 199 --GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGG---VGPKNAY 241
G GG S + + D GV + G + P + Y
Sbjct: 503 DFGPGGASGLGVLTHRNKDGT------GVR---VIVAGTLDINPDDDY 541
Score = 37.7 bits (87), Expect = 0.003
Identities = 39/192 (20%), Positives = 65/192 (33%), Gaps = 66/192 (34%)
Query: 10 TTQINGFTGGFMLQKTNLNQPSSLSFTRRRIQTIVKASARVDKFSKSDIIVSPSILSANF 69
T ++ GFT G + S L Q +V A A I + S +F
Sbjct: 252 TAKLLGFTPGELR--------SYLKGATGHSQGLVTAVA---------IAETDS--WESF 292
Query: 70 AKLGEQVKAVELAGCDWIHVDVMDG----RFVPNITIGPLVV-DALR-----P-----VT 114
KA+ + +I G PN ++ P ++ D+L P ++
Sbjct: 293 FVSV--RKAITVLF--FI------GVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS 342
Query: 115 DLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTL-NQIKDLGAKAGVVLN 173
+L + +V D++ + H + + +L N GAK VV
Sbjct: 343 NLTQE----------QVQDYVNK----TNSHLPAGKQVEI--SLVN-----GAKNLVVSG 381
Query: 174 PATSLSAIECVL 185
P SL + L
Sbjct: 382 PPQSLYGLNLTL 393
Score = 37.3 bits (86), Expect = 0.004
Identities = 24/123 (19%), Positives = 44/123 (35%), Gaps = 53/123 (43%)
Query: 154 LHRTLN-Q----------IKDLGAKAGVVLNPAT----SL---SAIEC---VL---DVVD 189
L T Q +DL +K G++ AT SL +A+ V+ +V+
Sbjct: 1726 LSATQFTQPALTLMEKAAFEDLKSK-GLIPADATFAGHSLGEYAALASLADVMSIESLVE 1784
Query: 190 LV---------------------LIMSVNPGFGGQSFIESQVKKISDLRRMCLEKG---- 224
+V ++++NPG SF + ++ + + R+ G
Sbjct: 1785 VVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVE--RVGKRTGWLVE 1842
Query: 225 -VN 226
VN
Sbjct: 1843 IVN 1845
Score = 31.6 bits (71), Expect = 0.31
Identities = 36/214 (16%), Positives = 69/214 (32%), Gaps = 73/214 (34%)
Query: 9 STTQINGFTGGFMLQKTNLNQPSSLSFTRRRIQTIVKASARVDKFSKSDIIVSPSILSAN 68
+T F +K L+ FT+ + + KA+ K +I + +
Sbjct: 1713 HSTSYT-FRS----EKGLLSATQ---FTQPALTLMEKAAFEDLK--SKGLIPADAT---- 1758
Query: 69 FA--KLGEQVKA-VELAGCDWIHVDVM---DG------RFVPNITIGPLVVDALRPVTDL 116
FA LGE A LA VM R G + A+ P +L
Sbjct: 1759 FAGHSLGEYA-ALASLAD-------VMSIESLVEVVFYR-------GMTMQVAV-PRDEL 1802
Query: 117 PLDVHLMI-VEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPA 175
+ MI + P + F + + E+ +G + G ++
Sbjct: 1803 GRSNYGMIAINPGRVAASF---SQEALQYVVER---------------VGKRTGWLVEIV 1844
Query: 176 ----------TS--LSAIECVLDVVDLVLIMSVN 197
+ L A++ V +V++ + + ++
Sbjct: 1845 NYNVENQQYVAAGDLRALDTVTNVLNFIKLQKID 1878
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.2 bits (80), Expect = 0.017
Identities = 24/128 (18%), Positives = 43/128 (33%), Gaps = 21/128 (16%)
Query: 129 QRVPDFIKAG------ADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGV--VLNP-----A 175
+ V D K+ I+ S T+ L TL ++ + V VL
Sbjct: 36 KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM 95
Query: 176 TSLSAIECVLDVVDLVLIMS-VNPGF-GGQSFIESQV---KKISDLRRMCLEKGVNPWIE 230
+ + E + + + + + Q F + V + LR+ LE +
Sbjct: 96 SPIKT-EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL 154
Query: 231 VDG--GVG 236
+DG G G
Sbjct: 155 IDGVLGSG 162
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Length = 361
Score = 31.9 bits (73), Expect = 0.16
Identities = 19/113 (16%), Positives = 34/113 (30%), Gaps = 15/113 (13%)
Query: 35 FTRRRIQTIVKASARVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDG 94
++ + + K K + VS ++ +A+ AG D+ VDV
Sbjct: 68 MGALHRFMTIEENIQEFKKCKGPVFVSVGCTENEL----QRAEALRDAGADFFCVDVAHA 123
Query: 95 RFVPNITIGPLVVDALRPVTDLPLDVHLM---IVEPEQRVPDFIKAGADIVSV 144
V L+ + L +M + GADI+
Sbjct: 124 H-----AKY--VGKTLKSLRQLLGSRCIMAGNVATYAG-ADYLASCGADIIKA 168
>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural
genomics, PSI, protein structure initiative; 2.30A
{Streptococcus agalactiae}
Length = 224
Score = 31.7 bits (71), Expect = 0.16
Identities = 29/192 (15%), Positives = 60/192 (31%), Gaps = 30/192 (15%)
Query: 74 EQVKAVELAGCDWIHVDVMDGRFVPNITIGP-LVVDALRPVTDLPLDVHLMI-------- 124
+ ++ A V++ D V T ++ +A + + + + V +MI
Sbjct: 12 TDLTRLDKAIIS--RVELCDNLAVGGTTPSYGVIKEANQYLHEKGISVAVMIRPRGGNFV 69
Query: 125 ---VEPEQRVPD---FIKAGAD-IVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS 177
+E D ++ +D +V ++ I + P
Sbjct: 70 YNDLELRIMEEDILRAVELESDALVLGILTSNNHIDTEAIEQLLPATQGL------PLVF 123
Query: 178 LSAIECVLDVV-DLVLIMSVNPGF-----GGQSFIESQVKKISDLRRMCLEKGVNPWIEV 231
A + + + V GF G S E ++ I ++ + I V
Sbjct: 124 HMAFDVIPKSDQKKSIDQLVALGFTRILLHGSSNGEPIIENIKHIKALVEYANNRIEIMV 183
Query: 232 DGGVGPKNAYKV 243
GGV +N +
Sbjct: 184 GGGVTAENYQYI 195
>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase
structure, B enzymes, Zn2+ binding site, TIM-barrel
fold, lyase; 1.70A {Vibrio cholerae}
Length = 464
Score = 29.8 bits (68), Expect = 0.84
Identities = 17/81 (20%), Positives = 26/81 (32%), Gaps = 24/81 (29%)
Query: 74 EQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVH------------ 121
+ + + G D I + M G P +V L+ D+ L +H
Sbjct: 162 DVAQQLAELGVDSIALKDMAGILTPYAAE--ELVSTLKKQVDVELHLHCHSTAGLADMTL 219
Query: 122 LMIVEPEQRVPDFIKAGADIV 142
L +E AG D V
Sbjct: 220 LKAIE----------AGVDRV 230
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer,
alpha-beta barrel, beta sandwich, FAD domain alpha/beta
NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis}
SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Length = 311
Score = 29.1 bits (66), Expect = 1.2
Identities = 26/99 (26%), Positives = 38/99 (38%), Gaps = 19/99 (19%)
Query: 65 LSANFAKLGEQVKAVELAGCDWI---------HVDVMDGRFVPNITIGPLVVDALRP--- 112
LS N + KAVE AG D + D+ + + G L A++P
Sbjct: 171 LSPNVTDIVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVAL 230
Query: 113 --VTDLPLDVHLMI-----VEPEQRVPDFIKAGADIVSV 144
+ + DV + I V Q V + AGA V+V
Sbjct: 231 KLIHQVAQDVDIPIIGMGGVANAQDVLEMYMAGASAVAV 269
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG,
lyase, PSI-2, protein structure initiative; HET: MSE;
1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Length = 275
Score = 28.9 bits (64), Expect = 1.4
Identities = 29/193 (15%), Positives = 60/193 (31%), Gaps = 19/193 (9%)
Query: 62 PSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVH 121
+ A E K + A ++ V V+ + P + + A D + +
Sbjct: 35 GRVALNVLANNIENAKDIFEAAEGYVVVGVLSKDY-PTVEEAVTAMKAYGKEIDDAVSIG 93
Query: 122 LMIVEPEQRVPDFIKAGADIVSVHCEQS-STIHLHRTL--------NQIKDLGAKAGVVL 172
L + Q + H Q ++ R N + K G V
Sbjct: 94 LGAGDNRQAA-VVAEIAKHYPGSHINQVFPSVGATRANLGEKDSWINSLVSPTGKVGYVN 152
Query: 173 NPATSLSAIECVLDVVDL--VLIMSVNPGFGGQSFI----ESQVKKISDLRRMCLEKGVN 226
+SA +V + + + + G + + ++ + + C E+G
Sbjct: 153 ISTGPISAAGEEKAIVPIKTAIALVRDMGGNSLKYFPMKGLAHEEEYRAVAKACAEEGF- 211
Query: 227 PWIEVDGGVGPKN 239
+E GG+ +N
Sbjct: 212 -ALEPTGGIDKEN 223
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P
epimerase, NANE, structural genomics, protein STR
initiative, PSI; 1.95A {Staphylococcus aureus subsp}
SCOP: c.1.2.5
Length = 223
Score = 28.0 bits (62), Expect = 2.2
Identities = 17/126 (13%), Positives = 40/126 (31%), Gaps = 23/126 (18%)
Query: 77 KAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL---------DVHLMIVEP 127
A G I + + A++ DLP+ + I
Sbjct: 30 LAAYEGGAVGIRAN------------TKEDILAIKETVDLPVIGIVKRDYDHSDVFITAT 77
Query: 128 EQRVPDFIKAGADIVSVHC--EQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVL 185
+ V + I++ +++++ +Q L ++ I+ ++ + AT A
Sbjct: 78 SKEVDELIESQCEVIALDATLQQRPKETLDELVSYIRTHAPNVEIMADIATVEEAKNAAR 137
Query: 186 DVVDLV 191
D +
Sbjct: 138 LGFDYI 143
>1u7n_A Fatty acid/phospholipid synthesis protein PLSX; structural
genomics, enterococcus faecalis V583, PSI, protein
structure initiative; HET: MSE; 2.26A {Enterococcus
faecalis} SCOP: c.77.1.4
Length = 336
Score = 28.3 bits (64), Expect = 2.5
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 5/63 (7%)
Query: 86 WIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVH 145
I VD M G P + V+ A + D P D+ + E + +I +I +H
Sbjct: 5 KIAVDAMGGDNAPQAIV-EGVMLAKQ---DFP-DIEFQLYGKEAEIKKYITDEKNITIIH 59
Query: 146 CEQ 148
++
Sbjct: 60 TDE 62
>1x9l_A CUI-DR1885; copper binding protein, solution ST holo-form,
structural proteomics in europe, spine, structur
genomics; NMR {Deinococcus radiodurans} SCOP: b.2.10.1
PDB: 2jqa_A
Length = 149
Score = 27.1 bits (59), Expect = 3.3
Identities = 7/66 (10%), Positives = 20/66 (30%), Gaps = 2/66 (3%)
Query: 68 NFAKLGEQVKAVELAGCDW--IHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIV 125
N + ++ + G + L + A +T H+M++
Sbjct: 53 NKSDQPIKLVGAATPLATSPMLMTTTHSGGMAGMKMVPWLTIPARGTLTLQRDGDHVMLM 112
Query: 126 EPEQRV 131
++ +
Sbjct: 113 GLKRPL 118
>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain,
structural genomics, joint center for STR genomics,
JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc
13032}
Length = 393
Score = 27.9 bits (62), Expect = 3.3
Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 8/68 (11%)
Query: 129 QRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIK--------DLGAKAGVVLNPATSLSA 180
+ P IKAGAD++ + S H++ + D+ AG V + T+L
Sbjct: 169 EIAPIVIKAGADLLVIQGTLISAEHVNTGGEALNLKEFIGSLDVPVIAGGVNDYTTALHM 228
Query: 181 IECVLDVV 188
+ +
Sbjct: 229 MRTGAVGI 236
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH;
2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A*
3i5u_A* 3i64_A*
Length = 332
Score = 27.2 bits (61), Expect = 4.8
Identities = 9/32 (28%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 156 RTLNQIKDLGAKAG---VVLNPATSLSAIECV 184
R+L ++ +L A+AG +P + +S +E
Sbjct: 299 RSLAELGELAAQAGLAVRAAHPISYVSIVEMT 330
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis,
metal-binding, NADP, oxidoreductase, zinc; 2.0A
{Arabidopsis thaliana} PDB: 2cf6_A*
Length = 357
Score = 26.8 bits (60), Expect = 6.5
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 200 FGGQSFIESQVKKISDLRRM---CLEKGVNPWIEV 231
G + S + + + M C EKG++ IEV
Sbjct: 290 LGRKVITGSFIGSMKETEEMLEFCKEKGLSSIIEV 324
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H)
oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Length = 348
Score = 26.8 bits (60), Expect = 7.0
Identities = 6/36 (16%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Query: 199 GFGGQSFIESQVKKISDLRRM---CLEKGVNPWIEV 231
G + S + I + + M ++ + P I++
Sbjct: 282 HLGNRKVYGSLIGGIKETQEMVDFSIKHNIYPEIDL 317
>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK;
oxidoreductase, zinc binding, oxydoreductase,
metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2
c.2.1.1
Length = 369
Score = 26.8 bits (60), Expect = 7.3
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 200 FGGQSFIESQVKKISDLRRM---CLEKGVNPWIEV 231
++ S + I + + M C E G+ IE+
Sbjct: 304 MKRRAIAGSMIGGIPETQEMLDFCAEHGIVADIEM 338
>2o2c_A GPI, glucose-6-phosphate isomerase, glycosomal, PGI, phosphohexose;
dimer; HET: G6Q; 1.58A {Trypanosoma brucei brucei} PDB:
2o2d_A* 1q50_A
Length = 613
Score = 26.9 bits (60), Expect = 7.4
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 6/31 (19%)
Query: 97 VPNITI-----GPL-VVDALRPVTDLPLDVH 121
V NI I GP+ +AL+P + L +H
Sbjct: 200 VVNIGIGGSDLGPVMATEALKPFSQRDLSLH 230
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding,
biotin, disease mutation, gluconeogenesis, ligase, lipid
synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens}
PDB: 3bg9_A
Length = 718
Score = 26.9 bits (60), Expect = 7.6
Identities = 19/82 (23%), Positives = 29/82 (35%), Gaps = 25/82 (30%)
Query: 74 EQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRP-VTDLPLDVH----------- 121
+ + AG + + M G P ++V +LR DLPL +H
Sbjct: 265 GLAEELVRAGTHILCIKDMAGLLKPTAC--TMLVSSLRDRFPDLPLHIHTHDTSGAGVAA 322
Query: 122 -LMIVEPEQRVPDFIKAGADIV 142
L + AGAD+V
Sbjct: 323 MLACAQ----------AGADVV 334
>2wu8_A Glucose-6-phosphate isomerase; gluconeogenesis,
5-phosphoarabinonate (PAB), PGI, cytoplasm, glycolysis;
2.25A {Mycobacterium tuberculosis}
Length = 549
Score = 26.8 bits (60), Expect = 7.7
Identities = 11/31 (35%), Positives = 13/31 (41%), Gaps = 6/31 (19%)
Query: 97 VPNITI-----GP-LVVDALRPVTDLPLDVH 121
V NI I GP +V ALR D +
Sbjct: 146 VVNIGIGGSDLGPVMVYQALRHYADAGISAR 176
>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase,
zinc-dependent, plant DE biosynthesis, substrate
inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB:
1yqx_A*
Length = 366
Score = 26.4 bits (59), Expect = 8.6
Identities = 6/35 (17%), Positives = 13/35 (37%), Gaps = 3/35 (8%)
Query: 200 FGGQSFIESQVKKISDLRRM---CLEKGVNPWIEV 231
G + S + + + + M + + IEV
Sbjct: 297 AGRKIVAGSGIGGMKETQEMIDFAAKHNITADIEV 331
>3eea_A GAF domain/HD domain protein; structural genomics, PSI, MCSG,
protein structure initiative, midwest center for
structural genomics; HET: PG6; 1.80A {Geobacter
sulfurreducens}
Length = 162
Score = 25.8 bits (57), Expect = 9.2
Identities = 11/50 (22%), Positives = 16/50 (32%), Gaps = 5/50 (10%)
Query: 78 AVELAGCDWIHVDVMD---GRFVPNITIG--PLVVDALRPVTDLPLDVHL 122
+L WI V D F P + G + R + P + L
Sbjct: 25 LRKLVKTRWIAVYFFDRERRDFAPARSTGLPASFLPVFREMPLAPDKIPL 74
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.396
Gapped
Lambda K H
0.267 0.0786 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,768,130
Number of extensions: 229928
Number of successful extensions: 633
Number of sequences better than 10.0: 1
Number of HSP's gapped: 603
Number of HSP's successfully gapped: 51
Length of query: 246
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 155
Effective length of database: 4,160,982
Effective search space: 644952210
Effective search space used: 644952210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.2 bits)