RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 025927
(246 letters)
>d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 230
Score = 221 bits (565), Expect = 1e-73
Identities = 177/196 (90%), Positives = 189/196 (96%)
Query: 48 ARVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVV 107
+RVDKFSKSDIIVSPSILSANF+KLGEQVKA+E AGCDWIHVDVMDGRFVPNITIGPLVV
Sbjct: 1 SRVDKFSKSDIIVSPSILSANFSKLGEQVKAIEQAGCDWIHVDVMDGRFVPNITIGPLVV 60
Query: 108 DALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAK 167
D+LRP+TDLPLDVHLMIVEP+QRVPDFIKAGADIVSVHCEQSSTIHLHRT+NQIK LGAK
Sbjct: 61 DSLRPITDLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQIKSLGAK 120
Query: 168 AGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNP 227
AGVVLNP T L+AIE VLD VDLVLIMSVNPGFGGQSFIESQVKKISDLR++C E+G+NP
Sbjct: 121 AGVVLNPGTPLTAIEYVLDAVDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNP 180
Query: 228 WIEVDGGVGPKNAYKV 243
WIEVDGGVGPKNAYKV
Sbjct: 181 WIEVDGGVGPKNAYKV 196
>d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase
{Synechocystis sp. PCC 6803 [TaxId: 1148]}
Length = 221
Score = 190 bits (484), Expect = 1e-61
Identities = 127/187 (67%), Positives = 157/187 (83%)
Query: 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDL 116
+I+V+PSILSA+F++LGE++KAV+ AG DWIHVDVMDGRFVPNITIGPL+VDA+RP+T
Sbjct: 2 NIVVAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKK 61
Query: 117 PLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPAT 176
LDVHLMIVEPE+ V DF KAGADI+SVH E +++ HLHRTL QI++LG KAG VLNP+T
Sbjct: 62 TLDVHLMIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPST 121
Query: 177 SLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG 236
L +E VL V DL+LIMSVNPGFGGQSFI + KI LR+MC E+G++PWIEVDGG+
Sbjct: 122 PLDFLEYVLPVCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLK 181
Query: 237 PKNAYKV 243
P N ++V
Sbjct: 182 PNNTWQV 188
>d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase
{Streptococcus pyogenes [TaxId: 1314]}
Length = 217
Score = 182 bits (464), Expect = 1e-58
Identities = 85/186 (45%), Positives = 128/186 (68%), Gaps = 2/186 (1%)
Query: 58 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLP 117
+ ++PSIL+A++A ++ +E +++H+D+MDG+FVPNI+ G VV ++R + L
Sbjct: 2 LKIAPSILAADYANFASELARIEETDAEYVHIDIMDGQFVPNISFGADVVASMRKHSKLV 61
Query: 118 LDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS 177
D HLM+V+PE+ V F +AGADI+++H E T H+H L +IK G KAGVV+NP T
Sbjct: 62 FDCHLMVVDPERYVEAFAQAGADIMTIHTES--TRHIHGALQKIKAAGMKAGVVINPGTP 119
Query: 178 LSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP 237
+A+E +LD+VD VLIM+VNPGFGGQ+FI ++K++ + + EKG++ IEVDGGV
Sbjct: 120 ATALEPLLDLVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVDN 179
Query: 238 KNAYKV 243
K
Sbjct: 180 KTIRAC 185
>d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice
(Oryza sativa) [TaxId: 4530]}
Length = 220
Score = 144 bits (363), Expect = 2e-43
Identities = 72/187 (38%), Positives = 103/187 (55%), Gaps = 8/187 (4%)
Query: 60 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLD 119
++PS+LS++FA L + + G DW+H+D+MDG FVPN+TIG V+ +LR T LD
Sbjct: 4 IAPSMLSSDFANLAAEADRMVRLGADWLHMDIMDGHFVPNLTIGAPVIQSLRKHTKAYLD 63
Query: 120 VHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLS 179
HLM+ P V KAGA + H E S + + IK G + GV L P T +
Sbjct: 64 CHLMVTNPSDYVEPLAKAGASGFTFHIE-VSRDNWQELIQSIKAKGMRPGVSLRPGTPVE 122
Query: 180 AI---ECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG 236
+ + V+LVL+M+V PGFGGQ F+ ++K+ LR+ + IEVDGG+G
Sbjct: 123 EVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYP----SLDIEVDGGLG 178
Query: 237 PKNAYKV 243
P
Sbjct: 179 PSTIDVA 185
>d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium
falciparum [TaxId: 5833]}
Length = 221
Score = 140 bits (353), Expect = 6e-42
Identities = 64/188 (34%), Positives = 104/188 (55%), Gaps = 7/188 (3%)
Query: 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRP-VTDLP 117
I++PS+L++N +KL E+ + +E G +WIH+DVMD FVPN++ GP V++ L+ +
Sbjct: 4 IIAPSVLASNISKLAEETQRMESLGAEWIHLDVMDMHFVPNLSFGPPVINNLKKYTKSIF 63
Query: 118 LDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS 177
DVHLM+ PE+ VP + T + +I+D G+ + P T
Sbjct: 64 FDVHLMVEYPEKYVPLLKTSNQLTFHFEALNEDTERCIQLAKEIRDNNLWCGISIKPKTD 123
Query: 178 LSAIECVLD--VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGV 235
+ + +LD +++ VL+M+V PGFGGQSF+ + K+S LR+ N I+VDGG+
Sbjct: 124 VQKLVPILDTNLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKYK----NLNIQVDGGL 179
Query: 236 GPKNAYKV 243
+
Sbjct: 180 NIETTEIS 187
>d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase
{Escherichia coli [TaxId: 562]}
Length = 213
Score = 105 bits (263), Expect = 1e-28
Identities = 26/184 (14%), Positives = 61/184 (33%), Gaps = 14/184 (7%)
Query: 64 ILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTD--LPLDVH 121
++ + + + L VD+++ + + G V L+ + + L
Sbjct: 5 QVALDNQTMDSAYETTRLIA---EEVDIIEVGTILCVGEGVRAVRDLKALYPHKIVLADA 61
Query: 122 LMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAI 181
+ + +A AD V+V C + L+ K+ + L +
Sbjct: 62 KIADAGKILSRMCFEANADWVTVICC-ADINTAKGALDVAKEFNGDVQIELTGYWTWEQA 120
Query: 182 ECVLD--VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKN 239
+ D + +V S + G ++ E+ + I L + + V GG+ ++
Sbjct: 121 QQWRDAGIGQVVYHRSRDAQAAGVAWGEADITAIKRLSD------MGFKVTVTGGLALED 174
Query: 240 AYKV 243
Sbjct: 175 LPLF 178
>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate
2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]}
Length = 230
Score = 38.3 bits (88), Expect = 4e-04
Identities = 22/163 (13%), Positives = 48/163 (29%), Gaps = 8/163 (4%)
Query: 74 EQVKAVELAGCDWIHV-DVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVP 132
KA + AG I V D + + IT P++ + I V
Sbjct: 37 LMAKAAQEAGAVGIRANSVRDIKEIQAITDLPIIGIIKKDYPPQEP----FITATMTEVD 92
Query: 133 DFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVL 192
++++ C + + I+ + K L A + E ++ +
Sbjct: 93 QLAALNIAVIAMDCTKRDRHDGLDIASFIRQVKEKYPNQLLMADISTFDEGLVAHQAGID 152
Query: 193 IMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGV 235
+ G + + L + G+ + +G +
Sbjct: 153 FVGTT-LSGYTPYSRQEAGPDVALIEALCKAGI--AVIAEGKI 192
>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate
2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]}
Length = 222
Score = 32.1 bits (72), Expect = 0.044
Identities = 24/182 (13%), Positives = 55/182 (30%), Gaps = 27/182 (14%)
Query: 74 EQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL---------DVHLMI 124
+ A G I + + A++ DLP+ + I
Sbjct: 27 KMALAAYEGGAVGIRAN------------TKEDILAIKETVDLPVIGIVKRDYDHSDVFI 74
Query: 125 VEPEQRVPDFIKAGADIVSVHCEQ--SSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIE 182
+ V + I++ +++++ L ++ I+ ++ + AT A
Sbjct: 75 TATSKEVDELIESQCEVIALDATLQQRPKETLDELVSYIRTHAPNVEIMADIATVEEAKN 134
Query: 183 CVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAY 241
D I + G+ + + + + L+ I +G V P
Sbjct: 135 AARLGFD--YIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVI-AEGNVITPDMYK 191
Query: 242 KV 243
+V
Sbjct: 192 RV 193
>d1u7na_ c.77.1.4 (A:) Fatty acid/phospholipid synthesis protein
PlsX {Enterococcus faecalis [TaxId: 1351]}
Length = 329
Score = 28.4 bits (63), Expect = 0.88
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 5/63 (7%)
Query: 87 IHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHC 146
I VD M G P + V+ A + D P D+ + E + +I +I +H
Sbjct: 3 IAVDAMGGDNAPQAIV-EGVMLAKQ---DFP-DIEFQLYGKEAEIKKYITDEKNITIIHT 57
Query: 147 EQS 149
++
Sbjct: 58 DEK 60
>d1x9la_ b.2.10.1 (A:) Hypothetical protein DR1885 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 149
Score = 26.9 bits (59), Expect = 1.4
Identities = 9/67 (13%), Positives = 24/67 (35%), Gaps = 5/67 (7%)
Query: 87 IHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADI-VSVH 145
+ G + L + A +T H+M++ ++ +K G + +++
Sbjct: 74 LMTTTHSGGMAGMKMVPWLTIPARGTLTLQRDGDHVMLMGLKRP----LKVGETVNITLK 129
Query: 146 CEQSSTI 152
T+
Sbjct: 130 ATDGRTL 136
>d3bofa2 c.1.26.1 (A:1-300) Cobalamin-dependent methionine synthase
MetH, N-terminal domain {Thermotoga maritima [TaxId:
2336]}
Length = 300
Score = 27.3 bits (59), Expect = 1.7
Identities = 4/24 (16%), Positives = 15/24 (62%)
Query: 133 DFIKAGADIVSVHCEQSSTIHLHR 156
+I++G+D++ + ++ + L +
Sbjct: 52 SYIESGSDVILTNTFGATRMKLRK 75
>d1lt7a_ c.1.26.1 (A:) Betaine-homocysteine S-methyltransferase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 361
Score = 26.8 bits (58), Expect = 2.6
Identities = 5/24 (20%), Positives = 13/24 (54%)
Query: 133 DFIKAGADIVSVHCEQSSTIHLHR 156
+F++AG++++ +S L
Sbjct: 52 EFLRAGSNVMQTFTFYASEDKLEN 75
>d1k75a_ c.82.1.2 (A:) L-histidinol dehydrogenase HisD
{Escherichia coli [TaxId: 562]}
Length = 431
Score = 26.2 bits (57), Expect = 3.9
Identities = 11/41 (26%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 43 IVKASARVDKFSKSDIIVSPSILSANFAKLGEQVK-AVELA 82
+ + SA+ DK + + + VS ++A +L +++K A+ +A
Sbjct: 48 LREYSAKFDKTTVTALKVSAEEIAAASERLSDELKQAMAVA 88
>d2r4qa1 c.44.2.2 (A:171-273) Fructose-specific enzyme IIABC
component FruA, middle domain {Bacillus subtilis [TaxId:
1423]}
Length = 103
Score = 24.6 bits (54), Expect = 6.5
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 216 LRRMCLEKGVNPWIEVDGGVGPKNA 240
L+ E GV +E +G G K+
Sbjct: 22 LKEKAKELGVEIKVETNGSSGIKHK 46
>d2r48a1 c.44.2.2 (A:2-104) Mannose-specific enzyme IIBCA component
ManP, N-terminal domain {Bacillus subtilis [TaxId:
1423]}
Length = 103
Score = 24.6 bits (54), Expect = 6.9
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 216 LRRMCLEKGVNPWIEVDGGVGPKNA 240
L++ GV+ +E GG+G +N
Sbjct: 22 LQKAADRLGVSIKVETQGGIGVENK 46
>d2p10a1 c.1.12.9 (A:8-204) Uncharacterized protein Mll9387
{Mesorhizobium loti [TaxId: 381]}
Length = 197
Score = 24.9 bits (54), Expect = 8.6
Identities = 13/90 (14%), Positives = 25/90 (27%), Gaps = 17/90 (18%)
Query: 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMI--- 124
F + ++ ++ G + G G + +V ++
Sbjct: 98 PFMVMSTFLRELKEIGFAGVQNFPTVGLID-----GLFRQNLEETGMSYAQEVEMIAEAH 152
Query: 125 ---------VEPEQRVPDFIKAGADIVSVH 145
V + KAGADI+ H
Sbjct: 153 KLDLLTTPYVFSPEDAVAMAKAGADILVCH 182
>d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate
dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId:
1314]}
Length = 365
Score = 25.0 bits (54), Expect = 9.7
Identities = 20/112 (17%), Positives = 38/112 (33%), Gaps = 7/112 (6%)
Query: 129 QRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVV 188
+R +AGAD + + + + R + +I+ ++ + + D
Sbjct: 110 ERAEALFEAGADAIVIDTAHGHSAGVLRKIAEIRAHFPNRTLIAGNIATAEGARALYDAG 169
Query: 189 DLVLIM-----SVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGV 235
V+ + S+ QV I D + E G I DGG+
Sbjct: 170 VDVVKVGIGPGSICTTRVVAGVGVPQVTAIYDAAAVAREYGK--TIIADGGI 219
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.396
Gapped
Lambda K H
0.267 0.0427 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 899,216
Number of extensions: 40351
Number of successful extensions: 132
Number of sequences better than 10.0: 1
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 18
Length of query: 246
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 163
Effective length of database: 1,268,006
Effective search space: 206684978
Effective search space used: 206684978
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)