Your job contains 1 sequence.
>025928
MASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTV
LIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPG
QVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFD
PDAVATANILEASVRPPYYFLSVLTRTADGDEGGKLYICKAQAGDKRWFKGTRKYVESTA
SSFSVA
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 025928
(246 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2033087 - symbol:PSBP-1 "photosystem II subuni... 964 5.2e-97 1
TAIR|locus:2039727 - symbol:PnsL1 "Photosynthetic NDH su... 112 0.00024 1
>TAIR|locus:2033087 [details] [associations]
symbol:PSBP-1 "photosystem II subunit P-1" species:3702
"Arabidopsis thaliana" [GO:0005509 "calcium ion binding"
evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM;IDA]
[GO:0009543 "chloroplast thylakoid lumen" evidence=ISS;IDA]
[GO:0009654 "oxygen evolving complex" evidence=ISS] [GO:0015979
"photosynthesis" evidence=IEA] [GO:0030095 "chloroplast photosystem
II" evidence=ISS] [GO:0009534 "chloroplast thylakoid" evidence=IDA]
[GO:0019898 "extrinsic to membrane" evidence=TAS] [GO:0031977
"thylakoid lumen" evidence=IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0042742 "defense
response to bacterium" evidence=IEP;RCA] [GO:0008266 "poly(U) RNA
binding" evidence=IDA] [GO:0048046 "apoplast" evidence=IDA]
[GO:0000165 "MAPK cascade" evidence=RCA] [GO:0006364 "rRNA
processing" evidence=RCA] [GO:0006612 "protein targeting to
membrane" evidence=RCA] [GO:0009409 "response to cold"
evidence=RCA] [GO:0009595 "detection of biotic stimulus"
evidence=RCA] [GO:0009637 "response to blue light" evidence=RCA]
[GO:0009644 "response to high light intensity" evidence=RCA]
[GO:0009657 "plastid organization" evidence=RCA] [GO:0009697
"salicylic acid biosynthetic process" evidence=RCA] [GO:0009744
"response to sucrose stimulus" evidence=RCA] [GO:0009773
"photosynthetic electron transport in photosystem I" evidence=RCA]
[GO:0009814 "defense response, incompatible interaction"
evidence=RCA] [GO:0009862 "systemic acquired resistance, salicylic
acid mediated signaling pathway" evidence=RCA] [GO:0009867
"jasmonic acid mediated signaling pathway" evidence=RCA]
[GO:0010114 "response to red light" evidence=RCA] [GO:0010155
"regulation of proton transport" evidence=RCA] [GO:0010200
"response to chitin" evidence=RCA] [GO:0010207 "photosystem II
assembly" evidence=RCA] [GO:0010218 "response to far red light"
evidence=RCA] [GO:0010310 "regulation of hydrogen peroxide
metabolic process" evidence=RCA] [GO:0010363 "regulation of
plant-type hypersensitive response" evidence=RCA] [GO:0019344
"cysteine biosynthetic process" evidence=RCA] [GO:0019684
"photosynthesis, light reaction" evidence=RCA;TAS] [GO:0031348
"negative regulation of defense response" evidence=RCA] [GO:0043900
"regulation of multi-organism process" evidence=RCA] [GO:0050832
"defense response to fungus" evidence=RCA] InterPro:IPR002683
Pfam:PF01789 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0009570
GO:GO:0008266 GO:GO:0019898 GO:GO:0048046 GO:GO:0042742
GO:GO:0005509 GO:GO:0009941 EMBL:AC007592 GO:GO:0009535
GO:GO:0031977 UniGene:At.23738 GO:GO:0009543 GO:GO:0019684
Gene3D:3.40.1000.10 InterPro:IPR016123 SUPFAM:SSF55724
GO:GO:0009654 KO:K02717 UniGene:At.3352 EMBL:X98108 EMBL:AY056416
EMBL:AY070469 EMBL:AY074308 EMBL:AY096487 EMBL:AY087305 EMBL:Z25620
IPI:IPI00540742 IPI:IPI00891781 PIR:JC5271 RefSeq:NP_001117239.1
RefSeq:NP_172153.1 UniGene:At.42209 UniGene:At.47605
ProteinModelPortal:Q42029 SMR:Q42029 IntAct:Q42029 STRING:Q42029
SWISS-2DPAGE:Q42029 PaxDb:Q42029 PRIDE:Q42029 ProMEX:Q42029
DNASU:837178 EnsemblPlants:AT1G06680.1 GeneID:837178
KEGG:ath:AT1G06680 TAIR:At1g06680 eggNOG:NOG318473
HOGENOM:HOG000242124 InParanoid:Q42029 OMA:MASTSCF PhylomeDB:Q42029
ProtClustDB:PLN00042 Genevestigator:Q42029 GermOnline:AT1G06680
Uniprot:Q42029
Length = 263
Score = 964 (344.4 bits), Expect = 5.2e-97, P = 5.2e-97
Identities = 193/265 (72%), Positives = 224/265 (84%)
Query: 1 MASTQCFLHHHALSTTPARTSSS---QRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLA 57
MA + CFLH AL+++ AR+SSS QRHVS KP QI+C+AQ+ EDD SAVSRRLA
Sbjct: 1 MAYSACFLHQSALASSAARSSSSSSSQRHVSLSKPVQIICKAQQS--HEDDNSAVSRRLA 58
Query: 58 LTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKERE 117
LT+L+GAAAVGSKVSPADAAYGE+ANVFGKPKTNTDFLPYNGDGFK+ +P+KWNPSKE E
Sbjct: 59 LTLLVGAAAVGSKVSPADAAYGEAANVFGKPKTNTDFLPYNGDGFKVQVPAKWNPSKEIE 118
Query: 118 FPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEG 177
+PGQVLR+EDNFD+ SN++V++TPTDKKSITDYGSPEEFLS+V+YLLGKQAY G+T+SEG
Sbjct: 119 YPGQVLRFEDNFDATSNLNVMVTPTDKKSITDYGSPEEFLSQVNYLLGKQAYFGETASEG 178
Query: 178 GFDPDAVATANILEASVRP----PYYFLSVLTRTADGDEGGK------------LYICKA 221
GFD +AVATANILE+S + PYY+LSVLTRTADGDEGGK LYICKA
Sbjct: 179 GFDNNAVATANILESSSQEVGGKPYYYLSVLTRTADGDEGGKHQLITATVNGGKLYICKA 238
Query: 222 QAGDKRWFKGTRKYVESTASSFSVA 246
QAGDKRWFKG RK+VES A+SFSVA
Sbjct: 239 QAGDKRWFKGARKFVESAATSFSVA 263
>TAIR|locus:2039727 [details] [associations]
symbol:PnsL1 "Photosynthetic NDH subcomplex L 1"
species:3702 "Arabidopsis thaliana" [GO:0005509 "calcium ion
binding" evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM;IDA]
[GO:0009523 "photosystem II" evidence=IEA] [GO:0009654 "oxygen
evolving complex" evidence=IEA;ISS] [GO:0015979 "photosynthesis"
evidence=IEA] [GO:0019898 "extrinsic to membrane" evidence=IEA]
[GO:0030095 "chloroplast photosystem II" evidence=ISS] [GO:0009543
"chloroplast thylakoid lumen" evidence=IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009535 "chloroplast thylakoid membrane"
evidence=IDA] [GO:0010207 "photosystem II assembly" evidence=RCA]
[GO:0016556 "mRNA modification" evidence=RCA] [GO:0019344 "cysteine
biosynthetic process" evidence=RCA] InterPro:IPR002683 Pfam:PF01789
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0019898 GO:GO:0005509
EMBL:AC004218 UniGene:At.37167 UniGene:At.63501 GO:GO:0009535
GO:GO:0015979 GO:GO:0009543 Gene3D:3.40.1000.10 InterPro:IPR016123
SUPFAM:SSF55724 GO:GO:0009654 HOGENOM:HOG000232965 EMBL:AY039968
EMBL:AY133798 EMBL:AY085632 IPI:IPI00518089 IPI:IPI00656679
IPI:IPI00846788 PIR:T00557 RefSeq:NP_001031514.2
RefSeq:NP_001078022.1 RefSeq:NP_565906.1 ProteinModelPortal:O80634
SMR:O80634 STRING:O80634 PaxDb:O80634 PRIDE:O80634
EnsemblPlants:AT2G39470.1 GeneID:818532 KEGG:ath:AT2G39470
TAIR:At2g39470 eggNOG:NOG283132 InParanoid:Q94BP9 OMA:YAAPNQI
PhylomeDB:O80634 ProtClustDB:CLSN2688805 Genevestigator:O80634
Uniprot:O80634
Length = 238
Score = 112 (44.5 bits), Expect = 0.00024, P = 0.00024
Identities = 51/211 (24%), Positives = 83/211 (39%)
Query: 39 AQKQAVQEDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYN 98
+ + Q+ G+ RR AL +G + + PA E PK+ + F+
Sbjct: 44 SSESTYQKGSGNNWKRRQAL---VGVGTLVATSIPATLLLAEEI-----PKSYSPFVDRE 95
Query: 99 GDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLS 158
DG+ PS W +E +F ++D + NV V PT+K I + G EE
Sbjct: 96 -DGYSYYYPSDW---REFDFRAHDSAFKDRYLQLQNVRVRFIPTEKNDIHEVGPMEE--- 148
Query: 159 KVDYLLGKQAYSGKTSSEGGFD-PDAVATAN---ILEASVRPPYYFLSVLTRTADGDEGG 214
V Y L K ++ +D + V E +R P Y + A G+
Sbjct: 149 -VVYDLVKHKFAAPNQVATIYDMKERVEDGKNYYTFEYGLRTPIYATTSFATVAVGNN-- 205
Query: 215 KLYICKAQAGDKRWFKGTRKYVESTASSFSV 245
+ Y A ++RW K +K ++ A S +
Sbjct: 206 RYYTLIVGANERRWRK-VKKQLQVVADSLKI 235
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.313 0.128 0.370 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 246 246 0.0010 113 3 11 23 0.37 34
32 0.46 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 2
No. of states in DFA: 601 (64 KB)
Total size of DFA: 181 KB (2104 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 20.66u 0.10s 20.76t Elapsed: 00:00:01
Total cpu time: 20.66u 0.10s 20.76t Elapsed: 00:00:01
Start: Sat May 11 08:59:07 2013 End: Sat May 11 08:59:08 2013