Query 025928
Match_columns 246
No_of_seqs 176 out of 270
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 20:49:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025928.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025928hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v2b_A 23-kDa polypeptide of p 100.0 2.2E-45 7.6E-50 313.2 10.1 160 86-246 1-177 (177)
2 2xb3_A PSBP protein; photosynt 100.0 2E-32 6.9E-37 228.7 12.2 138 92-245 6-164 (165)
3 2lnj_A SLL1418 protein, putati 99.9 3E-33 1E-37 235.8 0.0 140 92-245 12-169 (170)
4 1tu1_A Hypothetical protein PA 97.1 0.0021 7.1E-08 52.1 8.5 32 214-246 111-142 (148)
5 3lyd_A Uncharacterized protein 84.4 13 0.00045 30.5 11.2 120 99-245 17-157 (161)
6 1e0l_A Formin binding protein; 33.5 15 0.00053 22.4 1.1 20 212-231 14-33 (37)
7 2ysi_A Transcription elongatio 32.6 17 0.00058 22.8 1.3 20 212-231 18-37 (40)
8 1ywi_A Formin-binding protein 30.9 16 0.00056 22.9 1.0 20 212-231 20-39 (41)
9 2pq4_B Periplasmic nitrate red 28.9 28 0.00096 21.4 1.8 12 52-63 3-14 (35)
10 3hlz_A Uncharacterized protein 26.9 58 0.002 28.6 4.0 43 94-140 7-49 (269)
11 1e0n_A Hypothetical protein; Y 26.1 22 0.00077 20.4 0.9 19 212-230 8-26 (27)
No 1
>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2
Probab=100.00 E-value=2.2e-45 Score=313.16 Aligned_cols=160 Identities=77% Similarity=1.244 Sum_probs=127.6
Q ss_pred CCCCCCCCceecCCCceEEecCCCCCcCCccCCCCceEEeecCCCCCCceEEEEecCCCCCccccCChHHHHHHHHHHHH
Q 025928 86 GKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLG 165 (246)
Q Consensus 86 g~pk~~~~f~~y~~dgYsf~yP~~W~~~~~~~~~G~d~~f~D~~~~~~nVsV~Vsp~~~~sI~dlGsPeef~~~v~~~L~ 165 (246)
|+||..++|.+|.+|||+|+||++|+++++.+++|++++|+|+++.++||+|+|+|+++++|+|||+|++||++|+++|+
T Consensus 1 ~~~~~~~g~~~y~~~gysf~yP~~W~~~~~~~~~G~~~~f~d~~~~~~nvsV~v~p~~~~si~dlGspe~~~~~v~~~l~ 80 (177)
T 1v2b_A 1 GKPKTDTDFQTYNGDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQVDYLLG 80 (177)
T ss_dssp ------CCEEEEECSSEEEEEETTCEECCCCCSTTEEEEEEETTEEEEEEEEEEEECSCSSGGGGCSHHHHHHHTGGGC-
T ss_pred CCCCCCCCceEEecCCEEEEcCCCCcccccccCCCceEEEeCCcCCCccEEEEEeCCCCCChhHCCCHHHHHHHHHHHHH
Confidence 67888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCCCCCCCCccccceeeeecccC----CceEEEEEEeecCCC---c---------cCCeEEEEEeeeCCcccc
Q 025928 166 KQAYSGKTSSEGGFDPDAVATANILEASVR----PPYYFLSVLTRTADG---D---------EGGKLYICKAQAGDKRWF 229 (246)
Q Consensus 166 ~~~~~~~~~~~~g~~~~~v~~a~ll~a~~r----~~YY~~Ey~~~~~~~---~---------~~GrLYtl~aqa~e~rW~ 229 (246)
++++.+++.+++||+|+.+++++||+++++ ++||+|||.++++++ . +|||||||++|++|+||+
T Consensus 81 ~~~~~~~~~~~~gf~~~~~~~a~ll~a~~r~~~G~~YY~~E~~~~~~~g~e~~rH~l~~~tv~~gkLY~l~~~a~e~~W~ 160 (177)
T 1v2b_A 81 RQAYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQYYYLSILTRTADGNEGGKHQLVTATVNDGKLYICKAQAGDKRWF 160 (177)
T ss_dssp -----------------CCCEEEEEEEEEEEETTEEEEEEEEEEEC-----CCEEEEEEEEEETTEEEEEEEEEEGGGCS
T ss_pred HHhhcccccccCCcccCcccceEEEEeEEEEeCCeEEEEEEEEEecCCCCccccEEEEEEEEECCEEEEEEEecCHHHhh
Confidence 999999899999999999999999999998 999999999998873 2 599999999999999999
Q ss_pred ch-hhHhHHHhhcccccC
Q 025928 230 KG-TRKYVESTASSFSVA 246 (246)
Q Consensus 230 k~-~~~~l~~v~~SF~V~ 246 (246)
++ ++. |++|++||+||
T Consensus 161 k~~~~~-l~~v~~SF~v~ 177 (177)
T 1v2b_A 161 KGAKKF-VENTATSFSLA 177 (177)
T ss_dssp TTTTHH-HHHHHHTCEEC
T ss_pred hhHHHH-HHHHHhheecC
Confidence 96 775 99999999997
No 2
>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus}
Probab=99.98 E-value=2e-32 Score=228.74 Aligned_cols=138 Identities=26% Similarity=0.475 Sum_probs=119.2
Q ss_pred CCceecC--CCceEEecCCCCCcCCccCCCCceEEeecCCCCCCceEEEEecCC-CCCccccCChHHHHHHHHHHHHhhh
Q 025928 92 TDFLPYN--GDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTD-KKSITDYGSPEEFLSKVDYLLGKQA 168 (246)
Q Consensus 92 ~~f~~y~--~dgYsf~yP~~W~~~~~~~~~G~d~~f~D~~~~~~nVsV~Vsp~~-~~sI~dlGsPeef~~~v~~~L~~~~ 168 (246)
.+|..|. ++||+|+||++|+++...+ |++++|+|+++..+||+|+|+|+. .++|+|||+||+ +++.|++++
T Consensus 6 ~g~~~~~D~~~gysf~~P~~W~~~~~~~--g~~v~f~d~~~~~~~v~V~v~p~~~~~~l~~~G~~e~----va~~l~~~~ 79 (165)
T 2xb3_A 6 SGLQAYVDSYDGYEFLYPRGWVQVQVED--PVDVVFHDIIETTENVSVVVNTVASTKSLEELGSPEE----VGDRLLRNI 79 (165)
T ss_dssp CCEEEEEETTTTEEEEEETTEEEECCCT--TEEEEEEESSCTTSEEEEEEEECSSCCCSGGGCCHHH----HHHHHHHHT
T ss_pred CCceEEEcCCCCEEEEcCCCCeEecCCC--CceEEEECcccCCceEEEEEecCCCCCChHHcCCHHH----HHHHHHHHh
Confidence 4566666 8999999999997655332 899999999999999999999995 599999999999 899999988
Q ss_pred hcCCCCCCCCCCCccccceeeeecccC----CceEEEEEEeecCC-----Cc---------cCCeEEEEEeeeCCccccc
Q 025928 169 YSGKTSSEGGFDPDAVATANILEASVR----PPYYFLSVLTRTAD-----GD---------EGGKLYICKAQAGDKRWFK 230 (246)
Q Consensus 169 ~~~~~~~~~g~~~~~v~~a~ll~a~~r----~~YY~~Ey~~~~~~-----~~---------~~GrLYtl~aqa~e~rW~k 230 (246)
++++ +++ +.++|+++.++ ++||+|||.+++++ +. ++||||+|++|++|++|++
T Consensus 80 ~~~~---~~~------~~~~l~~a~~r~~~G~~yY~~Ey~~~~~~~~~~~~~rh~l~~~~v~~g~lY~l~~sape~~w~~ 150 (165)
T 2xb3_A 80 IAPS---ESG------RSSALIAATSQKADDKTYYILEYAVTLPGDGNTAQQRHNLSSIAVSRGKVYTLSVSAPEERWPK 150 (165)
T ss_dssp TSCT---TSS------CEEEEEEEEEEEETTEEEEEEEEEEECC-----CCEEEEEEEEEEETTEEEEEEEEEEGGGHHH
T ss_pred hcCC---CCC------cceEEEEeeeeecCCceEEEEEEEEecCCCccCccccEEEEEEEEECCEEEEEEEecCHHHhHH
Confidence 8744 223 38899999997 89999999998887 32 4999999999999999999
Q ss_pred hhhHhHHHhhccccc
Q 025928 231 GTRKYVESTASSFSV 245 (246)
Q Consensus 231 ~~~~~l~~v~~SF~V 245 (246)
+++. |++|++||+|
T Consensus 151 ~~~~-l~~v~~SF~v 164 (165)
T 2xb3_A 151 VEDQ-FKTIVSSFTV 164 (165)
T ss_dssp HHHH-HHHHHHTCEE
T ss_pred HHHH-HHHHHhhEEe
Confidence 9886 9999999997
No 3
>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP}
Probab=99.95 E-value=3e-33 Score=235.79 Aligned_cols=140 Identities=26% Similarity=0.449 Sum_probs=120.6
Q ss_pred CCceecC--CCceEEecCCCCCcCCccC-CCCceEEeecCCCCCCceEEEEecCCC-CCccccCChHHHHHHHHHHHHhh
Q 025928 92 TDFLPYN--GDGFKLSIPSKWNPSKERE-FPGQVLRYEDNFDSNSNVSVIITPTDK-KSITDYGSPEEFLSKVDYLLGKQ 167 (246)
Q Consensus 92 ~~f~~y~--~dgYsf~yP~~W~~~~~~~-~~G~d~~f~D~~~~~~nVsV~Vsp~~~-~sI~dlGsPeef~~~v~~~L~~~ 167 (246)
.+|..|. .|||+|+||++|+++.... -.|++++|+|+++.++||+|+|+|+.+ ++|+|||+||+ |++.|+++
T Consensus 12 ~g~~~y~d~~~gy~f~~P~gW~~~~~~~~~~g~~v~f~d~~~~~~nvsV~v~p~~~~~si~d~G~pe~----va~~l~~~ 87 (170)
T 2lnj_A 12 ASLQRYSDTKDGYEFLYPNGWIGVDVKGASPGVDVVFRDLIERDENLSVIISEIPSDKTLTDLGTATD----VGYRFMKT 87 (170)
Confidence 4566666 7899999999997654321 139999999999999999999999966 99999999999 99999999
Q ss_pred hhcCCCCCCCCCCCccccceeeeecccC----CceEEEEEEeecC-CC---------ccCCeEEEEEeeeCCccccchhh
Q 025928 168 AYSGKTSSEGGFDPDAVATANILEASVR----PPYYFLSVLTRTA-DG---------DEGGKLYICKAQAGDKRWFKGTR 233 (246)
Q Consensus 168 ~~~~~~~~~~g~~~~~v~~a~ll~a~~r----~~YY~~Ey~~~~~-~~---------~~~GrLYtl~aqa~e~rW~k~~~ 233 (246)
+++++ + ..+.++||++.++ ++||+|||.++++ .+ .++||||+|++|++|++|+++++
T Consensus 88 ~~~~~---~------~~~~a~li~a~~~~~~G~~yY~~Ey~~~~~~~~~rh~l~~~~v~~gklY~l~~~ape~~w~~~~~ 158 (170)
T 2lnj_A 88 VNDAS---Q------GDRQAELINAEARDEDGQVYYTLEYRVLVGDNVERHDLASVTTNRGKLITFDLSTAEDRWDTVKS 158 (170)
Confidence 88754 3 3348899999998 8999999999887 32 25999999999999999999988
Q ss_pred HhHHHhhccccc
Q 025928 234 KYVESTASSFSV 245 (246)
Q Consensus 234 ~~l~~v~~SF~V 245 (246)
+ |++|++||+|
T Consensus 159 ~-l~~v~~SF~v 169 (170)
T 2lnj_A 159 L-FDTVASSFHV 169 (170)
Confidence 6 9999999997
No 4
>1tu1_A Hypothetical protein PA0094; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; 1.95A {Pseudomonas aeruginosa} SCOP: d.107.1.3
Probab=97.08 E-value=0.0021 Score=52.05 Aligned_cols=32 Identities=3% Similarity=-0.093 Sum_probs=28.7
Q ss_pred CeEEEEEeeeCCccccchhhHhHHHhhcccccC
Q 025928 214 GKLYICKAQAGDKRWFKGTRKYVESTASSFSVA 246 (246)
Q Consensus 214 GrLYtl~aqa~e~rW~k~~~~~l~~v~~SF~V~ 246 (246)
+++|+|+.+++..-|..... .++.|++||+..
T Consensus 111 ~~~l~~t~t~~~~~~~~~~~-~~~~i~~Sf~~~ 142 (148)
T 1tu1_A 111 PAVLITTLTTTPADLPHHEP-AWKQAMQTLVPR 142 (148)
T ss_dssp SSEEEEEEEECGGGHHHHHH-HHHHHHHTCEEC
T ss_pred CeEEEEEEEcCCCCCHHHHH-HHHHHHHhcccC
Confidence 39999999999999999777 599999999863
No 5
>3lyd_A Uncharacterized protein; PSI-2, MCSG, GEBA, genomic encyclopae bacteria and archaea, structural genomics, protein structur initiative; HET: MSE; 1.45A {Jonesia denitrificans}
Probab=84.41 E-value=13 Score=30.48 Aligned_cols=120 Identities=14% Similarity=0.121 Sum_probs=67.9
Q ss_pred CCceEEecCCCCCcCCccCCCCceEEeecCC---CCCCceEEEEecCCCCCccccCChHHHHHHHHHHHHhhhhcCCCCC
Q 025928 99 GDGFKLSIPSKWNPSKEREFPGQVLRYEDNF---DSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSS 175 (246)
Q Consensus 99 ~dgYsf~yP~~W~~~~~~~~~G~d~~f~D~~---~~~~nVsV~Vsp~~~~sI~dlGsPeef~~~v~~~L~~~~~~~~~~~ 175 (246)
.-++++-.|.+|...... |.-+.-.+.. ...-|+-|++...... + -|+ .-..|.+ .++
T Consensus 17 ~p~~~v~~P~gWe~~~~~---~~~~~~~~~~~~~~F~pN~vVtv~r~~~~----~--~e~----~r~el~~-~~~----- 77 (161)
T 3lyd_A 17 LTGFTVPIPETWQPDPTM---GTQFAARPHTPPQGFTPNIIGTVRRAATG----A--LHN----QRTELDQ-RAT----- 77 (161)
T ss_dssp CCEEEEECCTTEEECTTS---SSSEEEEESSCCSSSCCEEEEEEEEECTT----H--HHH----HHHHHHH-HHT-----
T ss_pred CceeeccCCCCceEcCCC---CceEEeccCCCCCCccccEEEEEEecCcH----H--HHH----HHHHHHH-HHh-----
Confidence 468999999999766332 3323222211 2457888888776322 1 233 3333333 111
Q ss_pred CCCCCCccccceeeeecc--cC--CceEEEEEEeecCC------------CccCCeEEEE--EeeeCCccccchhhHhHH
Q 025928 176 EGGFDPDAVATANILEAS--VR--PPYYFLSVLTRTAD------------GDEGGKLYIC--KAQAGDKRWFKGTRKYVE 237 (246)
Q Consensus 176 ~~g~~~~~v~~a~ll~a~--~r--~~YY~~Ey~~~~~~------------~~~~GrLYtl--~aqa~e~rW~k~~~~~l~ 237 (246)
.-|+- ++++.. +. ..-|..||.=..+. -..+|..|++ ++++.+.+-....+ +++
T Consensus 78 ---~lp~~----~~~~r~~~~~~G~pa~~iey~y~~~~~g~~aq~~~~vvve~~~v~~vv~lt~T~~~~q~~~~~~-d~q 149 (161)
T 3lyd_A 78 ---QLPDY----AERGRTETTVDGFPAYHIEYAYRHHGTITIAQMITLVEVSHPHAVDIIQLTATCAGDQTADYWD-TFR 149 (161)
T ss_dssp ---TSTTC----EEEEEEEEEETTEEEEEEEEEEEETTTEEEEEEEEEEEEECSSCEEEEEEEEEEEGGGHHHHHH-HHH
T ss_pred ---hCCCc----EeecccccccCCcccEEEEEEEecCCCceEeeEEEEEEEecCCEEEEEEEEEEeccccchHHHH-HHH
Confidence 01221 121111 11 55566666522221 1257777776 99999999888777 599
Q ss_pred Hhhccccc
Q 025928 238 STASSFSV 245 (246)
Q Consensus 238 ~v~~SF~V 245 (246)
.|++||+|
T Consensus 150 ~iv~sl~v 157 (161)
T 3lyd_A 150 LMHADLTV 157 (161)
T ss_dssp HHHHTCEE
T ss_pred HHhheeEe
Confidence 99999987
No 6
>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A
Probab=33.54 E-value=15 Score=22.44 Aligned_cols=20 Identities=25% Similarity=0.466 Sum_probs=17.8
Q ss_pred cCCeEEEEEeeeCCccccch
Q 025928 212 EGGKLYICKAQAGDKRWFKG 231 (246)
Q Consensus 212 ~~GrLYtl~aqa~e~rW~k~ 231 (246)
.+|+.|-.+..+.+.+|.+-
T Consensus 14 ~~G~~YYyN~~T~es~We~P 33 (37)
T 1e0l_A 14 ADGKTYYYNNRTLESTWEKP 33 (37)
T ss_dssp TTSCEEEEETTTTEEESSCC
T ss_pred CCCCEEEEECCCCCEEecCC
Confidence 56999999999999999984
No 7
>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1
Probab=32.64 E-value=17 Score=22.75 Aligned_cols=20 Identities=30% Similarity=0.632 Sum_probs=17.9
Q ss_pred cCCeEEEEEeeeCCccccch
Q 025928 212 EGGKLYICKAQAGDKRWFKG 231 (246)
Q Consensus 212 ~~GrLYtl~aqa~e~rW~k~ 231 (246)
.+|+.|-.+..+.+.+|.+-
T Consensus 18 ~~G~~YYyN~~T~eS~We~P 37 (40)
T 2ysi_A 18 PDGKVYYYNARTRESAWTKP 37 (40)
T ss_dssp TTSCEEEEETTTCCEESSCC
T ss_pred CCCCEEEEECCCCCEEeCCC
Confidence 57999999999999999884
No 8
>1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A
Probab=30.90 E-value=16 Score=22.90 Aligned_cols=20 Identities=20% Similarity=0.493 Sum_probs=17.7
Q ss_pred cCCeEEEEEeeeCCccccch
Q 025928 212 EGGKLYICKAQAGDKRWFKG 231 (246)
Q Consensus 212 ~~GrLYtl~aqa~e~rW~k~ 231 (246)
.+|+.|-.+..+.+.+|.+-
T Consensus 20 ~~G~~YYyN~~T~eS~We~P 39 (41)
T 1ywi_A 20 PDGRTYYYNTETKQSTWEKP 39 (41)
T ss_dssp TTTEEEEEETTTTEEEESCC
T ss_pred CCCCEEEEECCCCCEEeCCC
Confidence 47999999999999999873
No 9
>2pq4_B Periplasmic nitrate reductase precursor; NAPD/NAPA1-35, mixed beta-alpha sandwich structure, protein- peptide complex, alpha-helix; NMR {Escherichia coli}
Probab=28.94 E-value=28 Score=21.36 Aligned_cols=12 Identities=25% Similarity=0.138 Sum_probs=8.9
Q ss_pred chhHHHHHHHHH
Q 025928 52 VSRRLALTVLIG 63 (246)
Q Consensus 52 ~~RR~~L~~~a~ 63 (246)
++||+.|-+.+.
T Consensus 3 lsRR~FLK~~aa 14 (35)
T 2pq4_B 3 LSRRSFMKANAV 14 (35)
T ss_dssp CCSHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 679999975443
No 10
>3hlz_A Uncharacterized protein BT_1490; NP_810393.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=26.88 E-value=58 Score=28.60 Aligned_cols=43 Identities=23% Similarity=0.423 Sum_probs=29.0
Q ss_pred ceecCCCceEEecCCCCCcCCccCCCCceEEeecCCCCCCceEEEEe
Q 025928 94 FLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIIT 140 (246)
Q Consensus 94 f~~y~~dgYsf~yP~~W~~~~~~~~~G~d~~f~D~~~~~~nVsV~Vs 140 (246)
|+. ++-=|++.||.+|+.-...+ | .-.|-||..=++|..+.--
T Consensus 7 ~IS-PgaWfs~~yP~~W~EfEd~E--~-sflFynp~~WtGNfRISay 49 (269)
T 3hlz_A 7 FIS-PGAWFSMNYPSDWNEFEDGE--G-SFLFYNPDVWTGNFRISAF 49 (269)
T ss_dssp EEC-GGGCEEEEECTTCEEECCCT--T-EEEEECSSSCCCEEEEEEE
T ss_pred eec-CCceeEEecCCCcccccCCC--C-ceeeeChhhcccceEEEec
Confidence 665 56779999999997554332 3 3445567667888876543
No 11
>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1
Probab=26.06 E-value=22 Score=20.42 Aligned_cols=19 Identities=21% Similarity=0.319 Sum_probs=16.2
Q ss_pred cCCeEEEEEeeeCCccccc
Q 025928 212 EGGKLYICKAQAGDKRWFK 230 (246)
Q Consensus 212 ~~GrLYtl~aqa~e~rW~k 230 (246)
..|+.|=.+..+.+++|.+
T Consensus 8 ~~g~~YYyN~~T~~s~We~ 26 (27)
T 1e0n_A 8 ENGRPLYYNAEQKTKLHYP 26 (27)
T ss_dssp SSSSEEEEETTTTEEESSC
T ss_pred CCCCeEEEECCCCCEeccC
Confidence 4688888999999999975
Done!