BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025930
(246 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NWY|A Chain A, Structure And Allosteric Regulation Of The Uridine
Monophosphate Kinase From Mycobacterium Tuberculosis
pdb|3NWY|B Chain B, Structure And Allosteric Regulation Of The Uridine
Monophosphate Kinase From Mycobacterium Tuberculosis
pdb|3NWY|C Chain C, Structure And Allosteric Regulation Of The Uridine
Monophosphate Kinase From Mycobacterium Tuberculosis
pdb|3NWY|D Chain D, Structure And Allosteric Regulation Of The Uridine
Monophosphate Kinase From Mycobacterium Tuberculosis
pdb|3NWY|E Chain E, Structure And Allosteric Regulation Of The Uridine
Monophosphate Kinase From Mycobacterium Tuberculosis
pdb|3NWY|F Chain F, Structure And Allosteric Regulation Of The Uridine
Monophosphate Kinase From Mycobacterium Tuberculosis
Length = 281
Score = 33.9 bits (76), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 80 AANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCG-HPDVLAQVARGIA 138
A A P+ A + A L G ++ LKL GE + G + G PDV+AQVAR IA
Sbjct: 28 GAPASKPEPASTGAASAAQLSGYSRVLLKLGGE-----MFGGGQVGLDPDVVAQVARQIA 82
Query: 139 NFAK 142
+ +
Sbjct: 83 DVVR 86
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or329
Length = 252
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 79/177 (44%), Gaps = 25/177 (14%)
Query: 67 IMTQGGI----GLLSTTAANAEDPQTLRMVAGAIANLC-GNDKLQLKLRGEGGIKALLGM 121
I+ GG+ LL++T D + + A A+AN+ G D+ + GG++ L+ +
Sbjct: 40 IVDAGGVEVLVKLLTST-----DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKL 94
Query: 122 VRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRR 181
+ +V + AR +AN A G ++D G + +V+ + S +++
Sbjct: 95 LTSTDSEVQKEAARALANIA--------SGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQK 146
Query: 182 HIELALCHLAQHEVNA-KDMISGGALWELVRI----SRDCSREDIRTLAHRTLTSSP 233
AL ++A A K ++ G + LV++ + +E R LA+ + S P
Sbjct: 147 EAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALAN--IASGP 201
>pdb|3P4E|A Chain A, Phosphoribosylformylglycinamidine Cyclo-Ligase From Vibrio
Cholerae
Length = 349
Score = 30.8 bits (68), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 177 SPIRRHIELALCHLAQHEVNAKDMISGGALWE 208
+P + +I+ L +A+H+++A I+GG WE
Sbjct: 227 APTKIYIKSGLKLIAEHDIHAISHITGGGFWE 258
>pdb|3L6X|A Chain A, Crystal Structure Of P120 Catenin In Complex With
E-Cadherin
pdb|3L6Y|A Chain A, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
pdb|3L6Y|C Chain C, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
pdb|3L6Y|E Chain E, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
Length = 584
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 70/170 (41%), Gaps = 25/170 (14%)
Query: 42 EDETIHRVAAGAIANLAMNETNQELI-------MTQGGIGLLSTTAANAEDPQTLRMVAG 94
E E + + A+GA+ NLA++ N+ELI + + G ++ N + + ++
Sbjct: 367 EHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNT 426
Query: 95 AIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPD-----VLAQVARGIANFAKCESRAST 149
+ N + KLR GI+ L+ + + G+ A V + I + +
Sbjct: 427 INEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELRKPLEK 486
Query: 150 QGTK-------------TGRSLLIDDGALPWIVQNSNNEASPIRRHIELA 186
+G K + S DD LP I +N ++ P R I+++
Sbjct: 487 EGWKKSDFQVNLNNASRSQSSHSYDDSTLPLIDRNQKSDKKPDREEIQMS 536
>pdb|3NOW|A Chain A, Unc-45 From Drosophila Melanogaster
Length = 810
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%)
Query: 67 IMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGM 121
++ GI A E + ++A + +CG +L+ K+ EGG+KALL M
Sbjct: 490 VLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRM 544
>pdb|4B8J|A Chain A, Rimp_alpha1a
Length = 528
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 9/91 (9%)
Query: 121 MVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIR 180
+ R P + + A + N A GT ++ID GA+P V+ + + +R
Sbjct: 126 LTREDFPQLQFEAAWALTNIAS--------GTSENTKVVIDHGAVPIFVKLLGSSSDDVR 177
Query: 181 RHIELALCHLAQHEVNAKDMI-SGGALWELV 210
AL ++A +D++ + GAL L+
Sbjct: 178 EQAVWALGNVAGDSPKCRDLVLANGALLPLL 208
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls
pdb|2YNS|B Chain B, Rimp_alpha_b54nls
pdb|4B8O|A Chain A, Rimp_alpha_sv40tagnls
pdb|4B8P|A Chain A, Rimp_alpha_a89nls
pdb|4B8P|B Chain B, Rimp_alpha_a89nls
Length = 490
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 9/91 (9%)
Query: 121 MVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIR 180
+ R P + + A + N A GT ++ID GA+P V+ + + +R
Sbjct: 88 LTREDFPQLQFEAAWALTNIAS--------GTSENTKVVIDHGAVPIFVKLLGSSSDDVR 139
Query: 181 RHIELALCHLAQHEVNAKDMI-SGGALWELV 210
AL ++A +D++ + GAL L+
Sbjct: 140 EQAVWALGNVAGDSPKCRDLVLANGALLPLL 170
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.131 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,839,974
Number of Sequences: 62578
Number of extensions: 198650
Number of successful extensions: 620
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 603
Number of HSP's gapped (non-prelim): 18
length of query: 246
length of database: 14,973,337
effective HSP length: 96
effective length of query: 150
effective length of database: 8,965,849
effective search space: 1344877350
effective search space used: 1344877350
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)