Query 025930
Match_columns 246
No_of_seqs 115 out of 1168
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 11:10:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025930.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025930hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4224 Armadillo repeat prote 99.9 2.8E-24 6E-29 179.3 18.8 229 5-244 184-418 (550)
2 PLN03200 cellulose synthase-in 99.9 3.2E-23 6.8E-28 205.4 23.9 217 7-232 77-310 (2102)
3 KOG4224 Armadillo repeat prote 99.9 2.4E-23 5.1E-28 173.8 16.1 217 6-233 144-362 (550)
4 PLN03200 cellulose synthase-in 99.9 3.5E-22 7.6E-27 198.0 24.0 223 6-231 422-677 (2102)
5 KOG0166 Karyopherin (importin) 99.9 1E-21 2.2E-26 172.8 19.0 217 5-231 127-390 (514)
6 KOG0166 Karyopherin (importin) 99.9 1.8E-21 3.9E-26 171.2 19.6 211 22-233 102-350 (514)
7 COG5064 SRP1 Karyopherin (impo 99.9 1.7E-21 3.7E-26 161.6 12.1 215 6-230 133-394 (526)
8 COG5064 SRP1 Karyopherin (impo 99.9 2.1E-21 4.6E-26 161.0 11.9 212 22-235 107-357 (526)
9 PF05804 KAP: Kinesin-associat 99.8 1.8E-19 3.9E-24 166.1 21.3 222 6-244 267-489 (708)
10 PF04826 Arm_2: Armadillo-like 99.8 7.4E-18 1.6E-22 139.0 18.1 194 24-231 7-202 (254)
11 PF05804 KAP: Kinesin-associat 99.8 1.8E-16 4E-21 146.3 21.4 210 6-233 308-519 (708)
12 KOG4199 Uncharacterized conser 99.8 2.6E-16 5.6E-21 130.6 19.8 214 18-240 230-453 (461)
13 KOG4199 Uncharacterized conser 99.7 3.4E-15 7.4E-20 124.1 21.0 215 9-232 169-401 (461)
14 cd00020 ARM Armadillo/beta-cat 99.6 1.8E-13 3.8E-18 100.1 14.8 116 24-141 2-119 (120)
15 cd00020 ARM Armadillo/beta-cat 99.6 2.1E-13 4.6E-18 99.7 14.7 118 66-192 2-120 (120)
16 KOG2122 Beta-catenin-binding p 99.6 6E-14 1.3E-18 133.5 13.9 232 4-237 313-604 (2195)
17 KOG1048 Neural adherens juncti 99.5 8E-13 1.7E-17 120.5 19.9 224 6-231 251-638 (717)
18 PF04826 Arm_2: Armadillo-like 99.5 1.8E-12 4E-17 107.0 19.5 193 8-214 33-229 (254)
19 KOG1048 Neural adherens juncti 99.5 2.8E-13 6.1E-18 123.4 15.0 173 30-214 234-427 (717)
20 KOG2122 Beta-catenin-binding p 99.4 1.1E-11 2.4E-16 118.5 15.3 179 49-234 317-514 (2195)
21 PF10508 Proteasom_PSMB: Prote 99.4 1.3E-10 2.8E-15 105.6 20.0 180 27-216 75-255 (503)
22 KOG1222 Kinesin associated pro 99.3 1.1E-10 2.4E-15 101.6 14.9 225 7-244 364-629 (791)
23 KOG2160 Armadillo/beta-catenin 99.3 3.4E-10 7.3E-15 95.6 17.2 174 11-193 106-283 (342)
24 KOG4646 Uncharacterized conser 99.2 1.6E-10 3.4E-15 84.7 10.1 125 28-161 15-139 (173)
25 KOG3678 SARM protein (with ste 99.2 8.5E-10 1.9E-14 95.9 15.2 198 7-215 160-359 (832)
26 PF10508 Proteasom_PSMB: Prote 99.1 6E-09 1.3E-13 94.8 19.1 212 10-234 99-319 (503)
27 PF03224 V-ATPase_H_N: V-ATPas 99.1 1.4E-09 2.9E-14 93.3 12.8 200 22-231 45-266 (312)
28 KOG2160 Armadillo/beta-catenin 99.1 3E-08 6.5E-13 83.9 19.2 177 43-229 96-277 (342)
29 KOG1222 Kinesin associated pro 99.1 2.7E-09 5.8E-14 93.1 12.8 223 7-246 282-505 (791)
30 KOG3678 SARM protein (with ste 99.1 3.1E-09 6.7E-14 92.5 12.9 204 6-231 240-449 (832)
31 cd00256 VATPase_H VATPase_H, r 99.1 3.1E-08 6.8E-13 87.3 19.1 219 9-229 165-420 (429)
32 PRK09687 putative lyase; Provi 99.0 7E-09 1.5E-13 87.3 13.8 132 30-190 55-186 (280)
33 KOG4646 Uncharacterized conser 99.0 7.6E-09 1.7E-13 75.9 11.9 150 72-231 17-167 (173)
34 PF03224 V-ATPase_H_N: V-ATPas 99.0 1.2E-08 2.6E-13 87.5 13.9 197 8-214 77-293 (312)
35 KOG4500 Rho/Rac GTPase guanine 98.9 3.1E-08 6.7E-13 85.5 13.9 219 12-231 66-387 (604)
36 KOG0168 Putative ubiquitin fus 98.9 6.5E-08 1.4E-12 89.3 14.4 176 28-214 210-390 (1051)
37 KOG4500 Rho/Rac GTPase guanine 98.8 1.6E-07 3.4E-12 81.3 15.2 203 18-230 303-515 (604)
38 PRK09687 putative lyase; Provi 98.8 6.3E-07 1.4E-11 75.5 17.8 172 19-231 9-185 (280)
39 KOG0168 Putative ubiquitin fus 98.7 5E-07 1.1E-11 83.6 14.5 183 30-225 168-356 (1051)
40 KOG1293 Proteins containing ar 98.7 6.2E-07 1.4E-11 81.0 13.9 164 20-193 368-534 (678)
41 cd00256 VATPase_H VATPase_H, r 98.7 3.4E-06 7.3E-11 74.6 18.2 196 29-234 53-258 (429)
42 PF00514 Arm: Armadillo/beta-c 98.6 9E-08 1.9E-12 56.4 4.1 40 18-58 1-40 (41)
43 KOG2759 Vacuolar H+-ATPase V1 98.5 7.6E-06 1.6E-10 70.7 16.6 220 8-229 177-433 (442)
44 PRK13800 putative oxidoreducta 98.5 1.4E-05 2.9E-10 77.9 18.0 175 27-231 619-801 (897)
45 PRK13800 putative oxidoreducta 98.5 1.2E-05 2.5E-10 78.4 17.5 169 29-230 714-895 (897)
46 PF00514 Arm: Armadillo/beta-c 98.4 3.6E-07 7.8E-12 53.8 4.2 40 153-192 2-41 (41)
47 KOG1293 Proteins containing ar 98.4 4.5E-06 9.7E-11 75.6 13.0 116 25-142 415-533 (678)
48 KOG2171 Karyopherin (importin) 98.4 3.6E-05 7.8E-10 73.8 17.5 186 31-234 350-546 (1075)
49 PF05536 Neurochondrin: Neuroc 98.2 5.3E-05 1.1E-09 69.6 15.3 153 30-193 6-169 (543)
50 KOG0946 ER-Golgi vesicle-tethe 98.2 8.6E-05 1.9E-09 68.8 15.4 176 30-215 23-219 (970)
51 PF09759 Atx10homo_assoc: Spin 98.1 1.4E-05 3.1E-10 56.4 7.6 66 47-112 3-71 (102)
52 PF13646 HEAT_2: HEAT repeats; 98.1 6.5E-06 1.4E-10 56.6 5.9 87 115-230 1-88 (88)
53 KOG0946 ER-Golgi vesicle-tethe 98.1 0.00023 5E-09 66.1 16.2 197 7-215 42-265 (970)
54 KOG2759 Vacuolar H+-ATPase V1 98.1 9.8E-05 2.1E-09 64.0 13.1 233 8-242 134-408 (442)
55 KOG2973 Uncharacterized conser 98.1 0.0006 1.3E-08 57.1 17.2 210 7-228 61-309 (353)
56 smart00185 ARM Armadillo/beta- 98.1 1E-05 2.3E-10 47.1 5.1 40 19-59 2-41 (41)
57 PF01602 Adaptin_N: Adaptin N 98.0 2.1E-05 4.6E-10 72.0 9.0 177 30-230 115-292 (526)
58 PF05536 Neurochondrin: Neuroc 98.0 0.00042 9E-09 63.8 17.2 218 6-231 23-258 (543)
59 PF13646 HEAT_2: HEAT repeats; 98.0 4.1E-05 8.8E-10 52.6 7.3 87 31-138 1-88 (88)
60 KOG1789 Endocytosis protein RM 97.9 0.0012 2.7E-08 63.4 18.0 134 88-231 1741-1880(2235)
61 TIGR02270 conserved hypothetic 97.9 0.001 2.2E-08 59.0 16.7 89 73-192 119-207 (410)
62 smart00185 ARM Armadillo/beta- 97.9 3.2E-05 6.9E-10 45.0 4.8 40 153-192 2-41 (41)
63 KOG2171 Karyopherin (importin) 97.8 0.00092 2E-08 64.5 15.8 187 30-243 5-201 (1075)
64 COG5369 Uncharacterized conser 97.8 0.00011 2.3E-09 65.6 9.0 203 4-213 405-617 (743)
65 PF01602 Adaptin_N: Adaptin N 97.8 0.0017 3.8E-08 59.4 17.2 177 29-231 42-218 (526)
66 PF11841 DUF3361: Domain of un 97.8 0.0014 3.1E-08 50.0 13.5 121 22-142 4-131 (160)
67 KOG2734 Uncharacterized conser 97.8 0.0025 5.4E-08 55.9 16.4 183 20-213 167-370 (536)
68 PF14664 RICTOR_N: Rapamycin-i 97.7 0.0021 4.6E-08 56.4 15.4 191 12-215 8-199 (371)
69 KOG1789 Endocytosis protein RM 97.7 0.0027 5.8E-08 61.2 16.6 133 8-142 1745-1883(2235)
70 PF09759 Atx10homo_assoc: Spin 97.7 0.00025 5.5E-09 50.1 7.2 66 129-202 2-70 (102)
71 PF12348 CLASP_N: CLASP N term 97.7 0.00018 3.8E-09 58.7 7.5 184 40-241 17-213 (228)
72 KOG4413 26S proteasome regulat 97.6 0.0064 1.4E-07 51.7 15.6 199 22-231 121-374 (524)
73 KOG2973 Uncharacterized conser 97.6 0.0027 5.8E-08 53.3 13.1 159 32-204 6-173 (353)
74 TIGR02270 conserved hypothetic 97.6 0.0038 8.3E-08 55.4 14.9 151 28-230 53-203 (410)
75 PF13764 E3_UbLigase_R4: E3 ub 97.6 0.018 3.9E-07 55.1 19.9 220 24-243 112-418 (802)
76 PF10165 Ric8: Guanine nucleot 97.5 0.0022 4.7E-08 57.8 12.9 175 51-233 2-217 (446)
77 KOG2734 Uncharacterized conser 97.5 0.03 6.6E-07 49.3 18.6 205 13-229 109-341 (536)
78 PTZ00429 beta-adaptin; Provisi 97.5 0.018 3.9E-07 54.9 18.7 92 84-192 117-208 (746)
79 PTZ00429 beta-adaptin; Provisi 97.4 0.006 1.3E-07 58.1 15.2 179 31-230 142-322 (746)
80 COG1413 FOG: HEAT repeat [Ener 97.4 0.014 3E-07 50.4 16.0 152 31-231 76-239 (335)
81 PF11841 DUF3361: Domain of un 97.4 0.0095 2.1E-07 45.6 12.9 131 64-202 4-143 (160)
82 KOG1517 Guanine nucleotide bin 97.4 0.0069 1.5E-07 58.3 14.5 157 27-192 510-671 (1387)
83 PF12348 CLASP_N: CLASP N term 97.3 0.0027 5.8E-08 51.7 10.5 153 29-192 53-206 (228)
84 KOG2023 Nuclear transport rece 97.3 0.003 6.4E-08 58.1 11.3 172 29-216 128-311 (885)
85 PF13513 HEAT_EZ: HEAT-like re 97.3 0.00067 1.4E-08 42.3 5.0 55 44-99 1-55 (55)
86 PF13513 HEAT_EZ: HEAT-like re 97.2 0.00075 1.6E-08 42.1 4.6 55 86-140 1-55 (55)
87 PF10165 Ric8: Guanine nucleot 97.2 0.0095 2.1E-07 53.7 13.1 173 9-190 2-216 (446)
88 COG5369 Uncharacterized conser 97.2 0.0022 4.8E-08 57.6 8.3 135 50-192 409-545 (743)
89 COG5231 VMA13 Vacuolar H+-ATPa 97.1 0.019 4E-07 48.7 13.0 183 8-190 169-426 (432)
90 PF11698 V-ATPase_H_C: V-ATPas 97.1 0.0012 2.5E-08 48.0 5.0 69 114-190 44-113 (119)
91 PF14664 RICTOR_N: Rapamycin-i 97.1 0.035 7.7E-07 48.8 15.2 161 61-236 15-181 (371)
92 PF11701 UNC45-central: Myosin 97.0 0.0091 2E-07 45.9 9.6 145 31-190 5-157 (157)
93 KOG1242 Protein containing ada 97.0 0.012 2.7E-07 53.5 11.7 181 31-230 256-440 (569)
94 KOG0213 Splicing factor 3b, su 97.0 0.011 2.3E-07 55.3 11.3 152 31-192 801-954 (1172)
95 KOG3036 Protein involved in ce 96.9 0.049 1.1E-06 44.5 13.4 144 50-202 99-257 (293)
96 KOG3036 Protein involved in ce 96.9 0.14 3E-06 42.0 15.7 144 7-160 98-256 (293)
97 PF04063 DUF383: Domain of unk 96.8 0.026 5.7E-07 44.8 11.3 118 88-214 11-157 (192)
98 PF11698 V-ATPase_H_C: V-ATPas 96.8 0.0014 3.1E-08 47.6 3.5 69 31-100 45-114 (119)
99 COG1413 FOG: HEAT repeat [Ener 96.8 0.086 1.9E-06 45.4 15.0 152 29-232 43-207 (335)
100 PF12719 Cnd3: Nuclear condens 96.7 0.078 1.7E-06 45.2 14.0 169 29-215 26-208 (298)
101 KOG0212 Uncharacterized conser 96.7 0.09 2E-06 47.8 14.3 155 27-196 289-450 (675)
102 PF11707 Npa1: Ribosome 60S bi 96.6 0.23 5E-06 43.0 16.5 209 24-238 52-307 (330)
103 PF04063 DUF383: Domain of unk 96.5 0.052 1.1E-06 43.1 10.6 119 46-173 11-157 (192)
104 COG5181 HSH155 U2 snRNP splice 96.5 0.062 1.3E-06 49.4 12.1 152 29-192 604-759 (975)
105 KOG1059 Vesicle coat complex A 96.4 0.14 3E-06 47.9 14.1 184 31-242 146-340 (877)
106 PF04078 Rcd1: Cell differenti 96.4 0.062 1.3E-06 44.4 10.8 139 55-202 75-228 (262)
107 PF08569 Mo25: Mo25-like; Int 96.4 0.35 7.5E-06 41.9 15.9 197 23-230 70-279 (335)
108 PF12717 Cnd1: non-SMC mitotic 96.2 0.045 9.7E-07 43.0 9.0 91 85-193 1-93 (178)
109 KOG1059 Vesicle coat complex A 96.2 0.17 3.7E-06 47.4 13.7 144 28-192 180-328 (877)
110 KOG2999 Regulator of Rac1, req 96.2 0.22 4.9E-06 45.2 13.9 171 31-210 85-262 (713)
111 KOG4413 26S proteasome regulat 96.1 0.18 3.9E-06 43.2 12.4 176 31-215 80-266 (524)
112 KOG1242 Protein containing ada 96.1 0.38 8.3E-06 44.1 15.2 164 10-191 276-443 (569)
113 PF12755 Vac14_Fab1_bd: Vacuol 96.1 0.051 1.1E-06 38.2 7.7 84 89-185 3-90 (97)
114 COG5096 Vesicle coat complex, 96.1 0.37 8.1E-06 45.9 15.4 92 84-192 104-195 (757)
115 PF11701 UNC45-central: Myosin 96.0 0.052 1.1E-06 41.7 8.1 145 73-229 5-154 (157)
116 PF14668 RICTOR_V: Rapamycin-i 95.9 0.068 1.5E-06 35.4 7.2 68 47-114 4-71 (73)
117 KOG0212 Uncharacterized conser 95.8 0.094 2E-06 47.7 10.0 157 29-196 250-410 (675)
118 PF12755 Vac14_Fab1_bd: Vacuol 95.8 0.036 7.8E-07 39.0 6.0 67 28-99 26-94 (97)
119 KOG1517 Guanine nucleotide bin 95.8 0.14 3E-06 49.8 11.4 176 15-194 540-734 (1387)
120 PF02985 HEAT: HEAT repeat; I 95.8 0.014 3E-07 31.7 3.0 28 165-192 2-29 (31)
121 KOG1077 Vesicle coat complex A 95.7 1.3 2.9E-05 41.7 16.9 168 5-192 258-433 (938)
122 PF12717 Cnd1: non-SMC mitotic 95.7 0.56 1.2E-05 36.7 13.0 91 43-142 1-92 (178)
123 PF14668 RICTOR_V: Rapamycin-i 95.6 0.1 2.2E-06 34.6 7.2 66 89-163 4-70 (73)
124 PF06025 DUF913: Domain of Unk 95.6 1.5 3.2E-05 38.8 16.7 102 23-124 99-207 (379)
125 KOG3665 ZYG-1-like serine/thre 95.5 0.28 6E-06 46.8 12.5 175 53-227 494-690 (699)
126 PF08045 CDC14: Cell division 95.5 0.27 5.9E-06 40.8 11.0 95 89-191 108-206 (257)
127 KOG4151 Myosin assembly protei 95.5 0.22 4.8E-06 47.0 11.4 189 16-220 491-686 (748)
128 PF08045 CDC14: Cell division 95.5 0.37 8.1E-06 40.0 11.6 94 49-142 110-207 (257)
129 KOG1061 Vesicle coat complex A 95.5 0.071 1.5E-06 49.9 8.1 182 30-230 122-304 (734)
130 PF06371 Drf_GBD: Diaphanous G 95.4 0.087 1.9E-06 41.3 7.6 78 64-141 100-186 (187)
131 COG5096 Vesicle coat complex, 95.3 0.96 2.1E-05 43.2 15.1 153 50-231 40-192 (757)
132 COG5218 YCG1 Chromosome conden 95.2 1.1 2.4E-05 41.4 14.4 119 101-234 81-199 (885)
133 PF06025 DUF913: Domain of Unk 95.1 2.1 4.5E-05 37.9 15.8 158 50-215 4-207 (379)
134 PF08324 PUL: PUL domain; Int 95.0 1.1 2.4E-05 37.3 13.7 171 50-227 83-267 (268)
135 PF06371 Drf_GBD: Diaphanous G 95.0 0.51 1.1E-05 36.9 10.9 83 101-192 95-187 (187)
136 KOG0414 Chromosome condensatio 94.9 0.49 1.1E-05 46.7 12.1 140 30-192 920-1064(1251)
137 KOG4151 Myosin assembly protei 94.9 0.43 9.2E-06 45.1 11.4 190 30-229 542-736 (748)
138 PF02985 HEAT: HEAT repeat; I 94.9 0.051 1.1E-06 29.4 3.4 28 31-59 2-29 (31)
139 KOG2025 Chromosome condensatio 94.8 0.92 2E-05 42.7 13.0 111 113-236 85-195 (892)
140 PF04078 Rcd1: Cell differenti 94.6 0.86 1.9E-05 37.8 11.4 172 7-190 69-260 (262)
141 COG5231 VMA13 Vacuolar H+-ATPa 94.6 0.89 1.9E-05 38.9 11.5 186 43-229 162-423 (432)
142 KOG2025 Chromosome condensatio 94.5 1.6 3.6E-05 41.1 13.9 106 27-141 83-189 (892)
143 KOG2023 Nuclear transport rece 94.5 0.45 9.7E-06 44.4 10.2 131 30-172 175-308 (885)
144 KOG1241 Karyopherin (importin) 94.4 1.7 3.8E-05 41.2 13.9 192 32-238 220-439 (859)
145 KOG1061 Vesicle coat complex A 94.3 0.7 1.5E-05 43.6 11.3 91 85-192 99-189 (734)
146 KOG2611 Neurochondrin/leucine- 94.2 1 2.2E-05 40.6 11.6 104 18-123 45-162 (698)
147 KOG1241 Karyopherin (importin) 94.0 0.61 1.3E-05 44.0 10.2 148 28-191 318-476 (859)
148 KOG2259 Uncharacterized conser 94.0 0.34 7.4E-06 45.0 8.5 183 34-230 203-435 (823)
149 KOG2062 26S proteasome regulat 93.9 1 2.2E-05 42.6 11.4 69 115-200 556-626 (929)
150 KOG1824 TATA-binding protein-i 93.9 1.1 2.5E-05 43.4 11.9 157 29-195 857-1039(1233)
151 PF05004 IFRD: Interferon-rela 93.9 3.8 8.2E-05 35.2 16.4 189 31-231 45-254 (309)
152 KOG0213 Splicing factor 3b, su 93.8 0.39 8.6E-06 45.3 8.7 135 84-234 811-954 (1172)
153 KOG1062 Vesicle coat complex A 93.8 1.6 3.6E-05 41.5 12.7 118 84-216 306-453 (866)
154 PF05918 API5: Apoptosis inhib 93.7 1.4 3E-05 40.8 12.0 129 31-188 25-158 (556)
155 PRK14707 hypothetical protein; 93.5 2.7 5.8E-05 44.4 14.3 195 9-214 312-510 (2710)
156 KOG0414 Chromosome condensatio 93.4 0.74 1.6E-05 45.5 10.0 136 72-230 920-1060(1251)
157 COG5181 HSH155 U2 snRNP splice 93.3 0.61 1.3E-05 43.2 8.7 144 77-235 610-760 (975)
158 KOG1824 TATA-binding protein-i 93.2 3.1 6.6E-05 40.7 13.5 121 114-246 175-306 (1233)
159 COG5215 KAP95 Karyopherin (imp 93.2 4 8.7E-05 37.8 13.6 186 32-230 136-353 (858)
160 KOG3665 ZYG-1-like serine/thre 92.8 0.93 2E-05 43.3 9.8 161 16-184 500-689 (699)
161 COG5098 Chromosome condensatio 92.8 3.1 6.6E-05 39.4 12.6 127 42-192 908-1037(1128)
162 KOG2032 Uncharacterized conser 92.7 3.9 8.5E-05 37.0 12.8 139 43-192 271-415 (533)
163 KOG2611 Neurochondrin/leucine- 92.7 4.8 0.0001 36.5 13.3 155 77-243 17-202 (698)
164 KOG1077 Vesicle coat complex A 92.7 4.6 0.0001 38.2 13.5 121 73-202 370-498 (938)
165 COG5209 RCD1 Uncharacterized p 92.7 1.1 2.4E-05 36.4 8.5 144 50-202 120-278 (315)
166 PF14726 RTTN_N: Rotatin, an a 92.4 1.3 2.7E-05 31.2 7.7 86 9-96 9-95 (98)
167 KOG1058 Vesicle coat complex C 92.4 3.3 7.1E-05 39.4 12.3 106 27-142 241-346 (948)
168 PF12460 MMS19_C: RNAPII trans 92.3 7.9 0.00017 34.6 17.0 191 29-231 189-391 (415)
169 KOG2274 Predicted importin 9 [ 92.3 4.7 0.0001 39.1 13.4 154 29-192 530-689 (1005)
170 PF12460 MMS19_C: RNAPII trans 92.1 2.8 6.1E-05 37.5 11.6 110 73-194 273-396 (415)
171 PF07814 WAPL: Wings apart-lik 92.1 7.1 0.00015 34.3 13.8 93 31-123 23-116 (361)
172 PF05918 API5: Apoptosis inhib 92.0 2.8 6E-05 38.8 11.4 94 85-196 35-130 (556)
173 PF13764 E3_UbLigase_R4: E3 ub 91.9 4.6 0.0001 39.2 13.2 134 65-201 111-268 (802)
174 PF01347 Vitellogenin_N: Lipop 91.8 3.6 7.7E-05 38.7 12.5 171 31-235 397-591 (618)
175 KOG1820 Microtubule-associated 91.7 5.2 0.00011 38.9 13.3 171 43-231 266-440 (815)
176 PF12719 Cnd3: Nuclear condens 91.5 2.2 4.8E-05 36.3 9.9 108 78-192 34-143 (298)
177 KOG4231 Intracellular membrane 91.3 0.15 3.2E-06 46.0 2.4 177 51-241 226-404 (763)
178 PF12031 DUF3518: Domain of un 91.2 0.72 1.6E-05 37.8 6.1 80 46-125 140-228 (257)
179 PF11865 DUF3385: Domain of un 90.9 3 6.6E-05 32.0 9.2 32 30-61 11-43 (160)
180 KOG2137 Protein kinase [Signal 90.7 2.8 6.2E-05 39.5 10.2 138 24-179 384-524 (700)
181 KOG2956 CLIP-associating prote 90.7 7.9 0.00017 34.9 12.4 146 31-192 331-477 (516)
182 KOG1967 DNA repair/transcripti 90.7 2.4 5.3E-05 41.1 9.8 185 31-229 817-1019(1030)
183 KOG1832 HIV-1 Vpr-binding prot 90.6 1 2.2E-05 43.5 7.3 140 63-202 593-783 (1516)
184 KOG4653 Uncharacterized conser 90.4 5.9 0.00013 38.3 12.0 172 32-230 730-914 (982)
185 KOG0301 Phospholipase A2-activ 90.3 16 0.00035 34.4 15.0 122 85-217 601-729 (745)
186 PRK14707 hypothetical protein; 90.2 13 0.00028 39.8 14.8 203 15-231 234-442 (2710)
187 PF08167 RIX1: rRNA processing 90.2 5.9 0.00013 30.6 10.3 109 29-141 25-142 (165)
188 PF08569 Mo25: Mo25-like; Int 90.0 11 0.00025 32.7 12.8 173 30-215 126-308 (335)
189 KOG4653 Uncharacterized conser 89.8 8.8 0.00019 37.2 12.6 203 8-231 747-961 (982)
190 KOG0567 HEAT repeat-containing 89.8 9.1 0.0002 32.0 11.3 64 26-100 64-128 (289)
191 KOG1062 Vesicle coat complex A 89.6 20 0.00044 34.5 15.8 104 30-142 143-263 (866)
192 PF14663 RasGEF_N_2: Rapamycin 89.6 2.3 5.1E-05 30.7 7.1 71 164-241 9-88 (115)
193 KOG1248 Uncharacterized conser 89.5 25 0.00054 35.4 15.7 182 33-230 657-852 (1176)
194 KOG1832 HIV-1 Vpr-binding prot 89.3 1.9 4.1E-05 41.8 7.9 159 23-190 595-822 (1516)
195 KOG1991 Nuclear transport rece 89.1 4.3 9.4E-05 39.6 10.2 157 72-241 411-581 (1010)
196 COG5215 KAP95 Karyopherin (imp 88.9 16 0.00035 34.1 13.1 192 32-238 224-441 (858)
197 KOG2259 Uncharacterized conser 88.8 1.6 3.4E-05 40.9 6.9 108 65-192 367-475 (823)
198 KOG2999 Regulator of Rac1, req 87.4 17 0.00036 33.7 12.2 131 12-142 107-242 (713)
199 KOG1240 Protein kinase contain 87.2 11 0.00023 38.1 11.6 206 6-230 441-681 (1431)
200 KOG1943 Beta-tubulin folding c 86.7 13 0.00029 36.8 12.0 154 24-190 336-498 (1133)
201 KOG4535 HEAT and armadillo rep 86.7 2.1 4.6E-05 38.7 6.3 171 46-230 407-599 (728)
202 PF05004 IFRD: Interferon-rela 86.5 20 0.00043 30.8 14.9 149 30-190 87-255 (309)
203 PF07814 WAPL: Wings apart-lik 86.4 11 0.00024 33.1 10.7 93 73-173 23-116 (361)
204 cd03568 VHS_STAM VHS domain fa 86.0 3.3 7.1E-05 31.3 6.3 84 163-246 37-135 (144)
205 cd03569 VHS_Hrs_Vps27p VHS dom 86.0 3.5 7.5E-05 31.1 6.4 84 163-246 41-139 (142)
206 cd03568 VHS_STAM VHS domain fa 85.9 3.8 8.1E-05 31.0 6.5 72 114-192 38-110 (144)
207 KOG2956 CLIP-associating prote 85.9 27 0.00058 31.7 15.9 191 30-242 287-491 (516)
208 KOG2062 26S proteasome regulat 85.7 5.6 0.00012 37.9 8.6 85 43-141 568-652 (929)
209 KOG0211 Protein phosphatase 2A 85.6 16 0.00035 35.4 11.9 168 43-228 250-422 (759)
210 COG5240 SEC21 Vesicle coat com 85.4 18 0.0004 33.7 11.5 53 175-230 499-551 (898)
211 PF10363 DUF2435: Protein of u 84.8 3.8 8.3E-05 28.4 5.7 70 116-195 6-76 (92)
212 KOG2676 Uncharacterized conser 84.8 1.1 2.5E-05 38.7 3.5 62 50-111 376-440 (478)
213 COG5116 RPN2 26S proteasome re 84.7 4.6 9.9E-05 37.4 7.5 100 29-142 551-650 (926)
214 COG5209 RCD1 Uncharacterized p 84.7 10 0.00023 31.0 8.7 134 7-141 119-267 (315)
215 KOG0301 Phospholipase A2-activ 84.5 23 0.00049 33.5 11.9 146 25-185 585-739 (745)
216 PF12530 DUF3730: Protein of u 83.7 23 0.00049 29.0 15.0 137 31-192 2-151 (234)
217 KOG0915 Uncharacterized conser 83.6 61 0.0013 33.9 17.1 186 31-228 1000-1196(1702)
218 KOG1240 Protein kinase contain 83.3 44 0.00096 34.0 13.8 196 25-230 415-642 (1431)
219 KOG1060 Vesicle coat complex A 83.1 47 0.001 32.2 14.2 158 42-215 155-333 (968)
220 KOG1243 Protein kinase [Genera 82.8 14 0.00031 34.9 10.0 72 110-192 327-398 (690)
221 KOG1820 Microtubule-associated 82.8 22 0.00048 34.7 11.6 144 30-190 295-441 (815)
222 KOG0567 HEAT repeat-containing 82.6 17 0.00038 30.4 9.4 105 16-141 169-279 (289)
223 smart00638 LPD_N Lipoprotein N 82.3 36 0.00079 31.7 12.9 170 31-235 359-547 (574)
224 cd03561 VHS VHS domain family; 82.2 9 0.00019 28.3 7.2 72 114-192 38-112 (133)
225 PF08324 PUL: PUL domain; Int 82.1 28 0.0006 28.9 11.6 107 31-142 108-231 (268)
226 KOG2274 Predicted importin 9 [ 81.6 36 0.00077 33.4 12.2 148 73-231 532-686 (1005)
227 COG5218 YCG1 Chromosome conden 81.5 38 0.00081 31.9 11.9 103 28-142 90-196 (885)
228 PF08216 CTNNBL: Catenin-beta- 81.4 2 4.4E-05 30.6 3.2 41 91-131 65-105 (108)
229 smart00638 LPD_N Lipoprotein N 81.2 13 0.00028 34.7 9.5 141 7-183 420-569 (574)
230 cd03567 VHS_GGA VHS domain fam 80.8 8.2 0.00018 29.0 6.5 72 114-192 39-116 (139)
231 KOG1991 Nuclear transport rece 80.3 65 0.0014 32.0 14.2 109 28-142 409-532 (1010)
232 COG5240 SEC21 Vesicle coat com 79.7 45 0.00097 31.3 11.7 65 32-100 267-331 (898)
233 cd03569 VHS_Hrs_Vps27p VHS dom 79.5 11 0.00023 28.4 6.8 71 29-100 41-113 (142)
234 PF12031 DUF3518: Domain of un 79.5 5.8 0.00013 32.7 5.6 80 89-176 141-229 (257)
235 PF10363 DUF2435: Protein of u 78.4 12 0.00026 25.9 6.3 67 31-100 5-71 (92)
236 cd03567 VHS_GGA VHS domain fam 77.7 18 0.00039 27.1 7.5 70 30-100 39-115 (139)
237 KOG1248 Uncharacterized conser 77.6 66 0.0014 32.6 12.9 180 6-202 718-910 (1176)
238 smart00288 VHS Domain present 76.1 13 0.00029 27.5 6.5 72 114-192 38-111 (133)
239 cd03561 VHS VHS domain family; 76.1 20 0.00043 26.5 7.4 70 30-100 38-111 (133)
240 KOG1788 Uncharacterized conser 75.8 60 0.0013 33.0 11.9 62 153-214 898-960 (2799)
241 COG5116 RPN2 26S proteasome re 75.2 9.8 0.00021 35.4 6.4 94 113-230 551-646 (926)
242 PF01347 Vitellogenin_N: Lipop 75.2 29 0.00063 32.6 10.0 164 31-229 433-617 (618)
243 KOG0413 Uncharacterized conser 74.3 22 0.00047 35.3 8.6 125 44-191 945-1072(1529)
244 KOG1058 Vesicle coat complex C 73.9 66 0.0014 31.1 11.5 65 28-97 133-197 (948)
245 KOG0211 Protein phosphatase 2A 73.7 93 0.002 30.3 13.9 128 44-190 532-662 (759)
246 smart00288 VHS Domain present 73.6 19 0.00042 26.6 6.8 70 30-100 38-110 (133)
247 KOG4535 HEAT and armadillo rep 73.3 3.9 8.5E-05 37.1 3.4 100 84-191 496-602 (728)
248 PF01365 RYDR_ITPR: RIH domain 72.2 16 0.00035 29.1 6.6 145 29-192 4-169 (207)
249 KOG2137 Protein kinase [Signal 72.0 38 0.00083 32.3 9.5 129 72-215 390-519 (700)
250 KOG2199 Signal transducing ada 71.5 16 0.00034 32.3 6.5 84 163-246 45-143 (462)
251 PF08167 RIX1: rRNA processing 70.7 46 0.00099 25.6 10.0 90 114-214 26-126 (165)
252 KOG1967 DNA repair/transcripti 70.7 23 0.0005 34.7 7.9 149 28-188 866-1020(1030)
253 KOG1243 Protein kinase [Genera 69.1 71 0.0015 30.5 10.5 151 23-192 287-437 (690)
254 PF13251 DUF4042: Domain of un 66.7 61 0.0013 25.5 8.5 111 30-142 40-174 (182)
255 KOG0413 Uncharacterized conser 66.5 46 0.00099 33.2 8.9 120 86-230 945-1069(1529)
256 COG5656 SXM1 Importin, protein 65.6 74 0.0016 30.8 9.9 132 71-213 408-551 (970)
257 KOG1060 Vesicle coat complex A 64.9 1.4E+02 0.0031 29.1 13.5 32 31-62 37-68 (968)
258 KOG1943 Beta-tubulin folding c 64.8 1.6E+02 0.0035 29.7 14.7 199 22-233 531-746 (1133)
259 PF14225 MOR2-PAG1_C: Cell mor 64.7 84 0.0018 26.3 12.9 140 22-188 104-250 (262)
260 PF06012 DUF908: Domain of Unk 63.8 52 0.0011 28.5 8.4 62 152-213 252-325 (329)
261 KOG2032 Uncharacterized conser 63.8 98 0.0021 28.4 10.0 110 84-201 270-382 (533)
262 KOG2933 Uncharacterized conser 63.2 37 0.0008 29.1 7.0 103 115-230 90-195 (334)
263 KOG2073 SAP family cell cycle 61.9 84 0.0018 30.9 9.9 181 21-215 182-376 (838)
264 PF08216 CTNNBL: Catenin-beta- 61.2 17 0.00037 26.0 4.0 40 48-88 64-103 (108)
265 PF04499 SAPS: SIT4 phosphatas 60.5 36 0.00078 31.2 7.0 81 20-100 53-147 (475)
266 KOG0915 Uncharacterized conser 60.5 93 0.002 32.6 10.1 148 31-191 958-1112(1702)
267 PF04499 SAPS: SIT4 phosphatas 59.2 1.3E+02 0.0028 27.6 10.3 109 28-141 20-147 (475)
268 PF10521 DUF2454: Protein of u 59.2 1.1E+02 0.0023 25.8 9.7 70 30-100 120-202 (282)
269 PF06685 DUF1186: Protein of u 58.8 1.1E+02 0.0023 25.5 12.2 73 110-202 70-153 (249)
270 PF00790 VHS: VHS domain; Int 58.4 40 0.00086 25.1 5.9 70 30-100 43-117 (140)
271 PF09124 Endonuc-dimeris: T4 r 56.9 7.4 0.00016 24.0 1.4 16 231-246 17-32 (54)
272 PF07539 DRIM: Down-regulated 56.4 57 0.0012 24.5 6.4 28 162-189 16-43 (141)
273 PF03130 HEAT_PBS: PBS lyase H 55.8 11 0.00023 19.4 1.8 26 46-81 1-26 (27)
274 cd03572 ENTH_epsin_related ENT 55.5 36 0.00077 24.9 5.0 67 164-230 39-115 (122)
275 KOG2933 Uncharacterized conser 55.3 1.4E+02 0.003 25.8 10.5 93 87-192 103-199 (334)
276 KOG1566 Conserved protein Mo25 55.1 1.4E+02 0.003 25.8 16.7 187 23-218 73-271 (342)
277 PF10521 DUF2454: Protein of u 54.7 1.3E+02 0.0028 25.3 10.6 118 72-190 120-251 (282)
278 smart00567 EZ_HEAT E-Z type HE 54.6 18 0.00039 18.8 2.6 27 45-81 2-28 (30)
279 PF01365 RYDR_ITPR: RIH domain 54.2 62 0.0013 25.7 6.8 99 106-215 36-153 (207)
280 KOG1078 Vesicle coat complex C 53.5 1.9E+02 0.0042 28.2 10.5 67 164-236 467-534 (865)
281 KOG1020 Sister chromatid cohes 53.1 2.3E+02 0.0051 29.9 11.5 139 29-192 816-960 (1692)
282 KOG2199 Signal transducing ada 52.8 53 0.0011 29.2 6.3 71 29-100 45-117 (462)
283 PF00790 VHS: VHS domain; Int 52.5 24 0.00053 26.2 3.9 68 163-230 42-114 (140)
284 COG5098 Chromosome condensatio 52.2 1.1E+02 0.0023 29.7 8.5 107 31-142 301-415 (1128)
285 PF11865 DUF3385: Domain of un 51.5 1.1E+02 0.0023 23.5 7.4 140 73-230 12-153 (160)
286 cd00197 VHS_ENTH_ANTH VHS, ENT 51.3 85 0.0018 22.2 6.9 70 114-190 38-113 (115)
287 PF14726 RTTN_N: Rotatin, an a 50.8 84 0.0018 22.0 7.8 68 111-187 28-95 (98)
288 PF06685 DUF1186: Protein of u 49.8 1.5E+02 0.0033 24.6 12.1 96 25-128 69-169 (249)
289 PF04064 DUF384: Domain of unk 49.5 64 0.0014 20.2 5.3 47 54-100 2-48 (58)
290 cd03565 VHS_Tom1 VHS domain fa 48.8 1.1E+02 0.0024 22.8 7.2 72 114-192 39-115 (141)
291 PF12530 DUF3730: Protein of u 48.3 1.5E+02 0.0032 24.2 12.4 133 74-230 3-147 (234)
292 KOG1078 Vesicle coat complex C 47.8 2.8E+02 0.0061 27.2 12.4 59 78-142 252-311 (865)
293 PF06012 DUF908: Domain of Unk 47.4 1.4E+02 0.003 25.8 8.3 50 93-142 240-297 (329)
294 KOG2676 Uncharacterized conser 46.9 31 0.00066 30.3 4.0 60 133-200 376-438 (478)
295 KOG4464 Signaling protein RIC- 46.3 2.3E+02 0.0049 25.7 12.3 152 33-192 49-231 (532)
296 cd03565 VHS_Tom1 VHS domain fa 46.0 1.2E+02 0.0027 22.6 7.1 71 30-100 39-114 (141)
297 KOG4464 Signaling protein RIC- 45.8 2.3E+02 0.005 25.6 9.3 133 75-215 49-198 (532)
298 PF12726 SEN1_N: SEN1 N termin 43.4 3.2E+02 0.0069 26.5 11.2 107 30-141 442-552 (727)
299 PF04064 DUF384: Domain of unk 42.2 79 0.0017 19.8 4.4 43 186-228 1-43 (58)
300 PF09758 FPL: Uncharacterised 41.2 55 0.0012 24.9 4.2 122 20-141 17-148 (149)
301 PF15573 Imm27: Immunity prote 40.1 34 0.00074 27.8 3.1 80 26-124 40-122 (259)
302 KOG2312 Predicted transcriptio 39.8 3.9 8.5E-05 38.4 -2.5 156 51-214 14-171 (847)
303 PF12397 U3snoRNP10: U3 small 39.3 1.3E+02 0.0028 21.5 6.0 79 164-242 7-103 (121)
304 PF14225 MOR2-PAG1_C: Cell mor 38.5 2.4E+02 0.0051 23.6 11.5 169 31-230 65-250 (262)
305 PF09324 DUF1981: Domain of un 36.5 1.3E+02 0.0029 20.2 5.4 66 162-230 16-84 (86)
306 KOG4231 Intracellular membrane 36.3 85 0.0018 29.1 5.2 68 33-101 331-399 (763)
307 PF12231 Rif1_N: Rap1-interact 35.7 2.6E+02 0.0057 24.6 8.4 134 43-191 59-203 (372)
308 PF08506 Cse1: Cse1; InterPro 35.6 3.1E+02 0.0068 24.2 12.7 127 46-187 227-370 (370)
309 KOG1822 Uncharacterized conser 35.0 3.1E+02 0.0067 29.8 9.4 118 73-192 960-1088(2067)
310 KOG2029 Uncharacterized conser 34.9 2.2E+02 0.0049 27.0 7.8 82 153-234 281-364 (697)
311 PF14666 RICTOR_M: Rapamycin-i 34.6 2.5E+02 0.0055 22.9 13.1 127 85-230 77-221 (226)
312 KOG1788 Uncharacterized conser 32.5 2.9E+02 0.0064 28.5 8.4 132 71-215 466-600 (2799)
313 PF15573 Imm27: Immunity prote 32.3 2E+02 0.0044 23.5 6.3 95 115-236 48-144 (259)
314 PF07923 N1221: N1221-like pro 31.5 1.2E+02 0.0026 25.7 5.4 54 162-215 59-127 (293)
315 PRK09169 hypothetical protein; 29.9 8.4E+02 0.018 27.4 14.6 148 30-188 164-315 (2316)
316 PF11791 Aconitase_B_N: Aconit 29.9 62 0.0014 24.6 2.9 32 28-60 91-124 (154)
317 KOG1087 Cytosolic sorting prot 29.6 1.7E+02 0.0036 26.9 6.1 69 114-189 39-109 (470)
318 PF12783 Sec7_N: Guanine nucle 29.2 2.6E+02 0.0055 21.2 9.1 82 108-200 68-154 (168)
319 PF04821 TIMELESS: Timeless pr 28.4 3.5E+02 0.0076 22.5 12.2 121 109-229 36-203 (266)
320 PF08389 Xpo1: Exportin 1-like 28.4 1.3E+02 0.0027 21.9 4.5 49 127-187 100-148 (148)
321 PF07923 N1221: N1221-like pro 27.8 1.4E+02 0.003 25.3 5.1 62 113-174 60-127 (293)
322 PF01603 B56: Protein phosphat 27.2 4.5E+02 0.0098 23.5 10.9 35 22-57 126-160 (409)
323 KOG2029 Uncharacterized conser 25.6 3.9E+02 0.0085 25.4 7.7 84 51-135 271-355 (697)
324 PF04388 Hamartin: Hamartin pr 25.2 6.3E+02 0.014 24.4 10.2 56 176-231 81-137 (668)
325 PF12765 Cohesin_HEAT: HEAT re 24.8 40 0.00086 19.4 0.9 25 163-187 18-42 (42)
326 KOG2005 26S proteasome regulat 23.8 2.7E+02 0.0058 26.9 6.3 87 111-200 46-133 (878)
327 PLN03205 ATR interacting prote 23.6 4.4E+02 0.0096 23.8 7.3 59 126-190 385-444 (652)
328 KOG1949 Uncharacterized conser 23.4 7.2E+02 0.016 24.4 9.4 132 84-230 186-327 (1005)
329 PF10257 RAI16-like: Retinoic 23.3 5E+02 0.011 22.6 12.5 132 23-161 3-169 (353)
330 KOG2312 Predicted transcriptio 22.6 12 0.00025 35.4 -2.5 151 9-172 14-170 (847)
331 PF08454 RIH_assoc: RyR and IP 22.4 2.9E+02 0.0064 19.6 7.5 79 88-174 9-107 (109)
332 PF04821 TIMELESS: Timeless pr 22.2 4.6E+02 0.01 21.8 13.6 153 29-194 13-210 (266)
333 PF14663 RasGEF_N_2: Rapamycin 22.1 3E+02 0.0066 19.6 8.7 29 114-142 9-37 (115)
334 PF08713 DNA_alkylation: DNA a 21.0 4.1E+02 0.0089 20.7 6.5 72 29-112 120-196 (213)
335 cd03572 ENTH_epsin_related ENT 20.9 3.4E+02 0.0074 19.8 9.4 69 115-190 40-117 (122)
336 PF12726 SEN1_N: SEN1 N termin 20.8 7.1E+02 0.015 24.2 9.0 57 129-192 497-553 (727)
337 PF08711 Med26: TFIIS helical 20.1 2.1E+02 0.0045 17.0 4.8 44 187-230 3-46 (53)
No 1
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=2.8e-24 Score=179.33 Aligned_cols=229 Identities=19% Similarity=0.198 Sum_probs=195.4
Q ss_pred hhhhhHHhHhhccccccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcC--cHHHHHHHHhc
Q 025930 5 ILNTISVKSEDIRAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQG--GIGLLSTTAAN 82 (246)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g--~i~~L~~ll~~ 82 (246)
+.++.-.+.|+...++||+.++.+|++|.|+++++++ |+.+|..|+.+++|++-+..+|+.+++.+ .+|.|++++.+
T Consensus 184 qrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~-d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~ 262 (550)
T KOG4224|consen 184 QRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSG-DLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDD 262 (550)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccC-ChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhC
Confidence 3567778999999999999999999999999999997 88999999999999999999999999988 89999999999
Q ss_pred CCChHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhC
Q 025930 83 AEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDD 162 (246)
Q Consensus 83 ~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~ 162 (246)
+ +++++-+|..||.|++.+.+.+..+++.|++|.++++++++.-...-.....++|++.++ -+...+.+.
T Consensus 263 ~-s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihp---------lNe~lI~da 332 (550)
T KOG4224|consen 263 G-SDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHP---------LNEVLIADA 332 (550)
T ss_pred C-ChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhccccc---------Ccccceecc
Confidence 4 678888999999999999999999999999999999999887666777778889999753 555667789
Q ss_pred CChHHHHHcccCC-ChhHHHHHHHHHHHhcc-CchhHHHHHhCCcHHHHHHHHhcCCHHH--HHHHHHHHHccChhHHHH
Q 025930 163 GALPWIVQNSNNE-ASPIRRHIELALCHLAQ-HEVNAKDMISGGALWELVRISRDCSRED--IRTLAHRTLTSSPAFQAE 238 (246)
Q Consensus 163 g~i~~Lv~ll~~~-~~~v~~~a~~aL~~La~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~--~~~~A~~~L~~~~~~~~e 238 (246)
|++.+||++|..+ +++++.+|..+|++|+- ++.+++.|+++|+++.+++++.+++-.. ...++...|+.+..+++-
T Consensus 333 gfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~~ 412 (550)
T KOG4224|consen 333 GFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDNDKEA 412 (550)
T ss_pred cchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccccHHH
Confidence 9999999999877 45699999999999976 8889999999999999999998654322 224445555655555555
Q ss_pred HHHhhh
Q 025930 239 MRRLRI 244 (246)
Q Consensus 239 ~~~~~~ 244 (246)
+-.-|+
T Consensus 413 lld~gi 418 (550)
T KOG4224|consen 413 LLDSGI 418 (550)
T ss_pred HhhcCC
Confidence 544443
No 2
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.92 E-value=3.2e-23 Score=205.35 Aligned_cols=217 Identities=20% Similarity=0.263 Sum_probs=188.8
Q ss_pred hhhHHhHhhccccccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC---cchH-HHHHhcCcHHHHHHHHhc
Q 025930 7 NTISVKSEDIRAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN---ETNQ-ELIMTQGGIGLLSTTAAN 82 (246)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~---~~~~-~~i~~~g~i~~L~~ll~~ 82 (246)
+.++++.+++.++++|..|+..|+||+|+.+|+++ ++..++.|+.+|++|+.+ ++++ ..+++.|++|.|+.++++
T Consensus 77 nAaaaL~nLS~~e~nk~~Iv~~GaIppLV~LL~sG-s~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~ 155 (2102)
T PLN03200 77 NAAAVLGVLCKEEDLRVKVLLGGCIPPLLSLLKSG-SAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQP 155 (2102)
T ss_pred HHHHHHHHHhcCHHHHHHHHHcCChHHHHHHHHCC-CHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhC
Confidence 56689999999999999999999999999999998 788899999999999987 4445 456789999999999997
Q ss_pred CC--ChHHHHHHHHHHHHhhCCchhH-HHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHH
Q 025930 83 AE--DPQTLRMVAGAIANLCGNDKLQ-LKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLL 159 (246)
Q Consensus 83 ~~--~~~~~~~a~~aL~~L~~~~~~~-~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l 159 (246)
++ |.-+++.++.+|.|||...+++ ..+++.|++|.++.+++++++..+..|+.++.+++. ..++.++.+
T Consensus 156 gsk~d~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Las--------s~ee~~~aV 227 (2102)
T PLN03200 156 GNKQDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMM--------AFESSISKV 227 (2102)
T ss_pred CchhhHHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc--------CChHHHHHH
Confidence 53 3345678899999999877776 556899999999999999999999999999998885 446799999
Q ss_pred HhCCChHHHHHcccCC-ChhHHHHHHHHHHHhcc-CchhHHHHHhCCcHHHHHHHHhcCC--------HHHHHHHHHHHH
Q 025930 160 IDDGALPWIVQNSNNE-ASPIRRHIELALCHLAQ-HEVNAKDMISGGALWELVRISRDCS--------REDIRTLAHRTL 229 (246)
Q Consensus 160 ~~~g~i~~Lv~ll~~~-~~~v~~~a~~aL~~La~-~~~~~~~i~~~g~i~~L~~ll~~~~--------~~~~~~~A~~~L 229 (246)
++.|++|.|++++.++ ++.+|+.|+++|.+||. +++.++.++++|+++.|++++..++ +...++.|.++|
T Consensus 228 IeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwAL 307 (2102)
T PLN03200 228 LDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGAL 307 (2102)
T ss_pred HHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHH
Confidence 9999999999999765 56999999999999998 6789999999999999999998533 245688999999
Q ss_pred ccC
Q 025930 230 TSS 232 (246)
Q Consensus 230 ~~~ 232 (246)
.++
T Consensus 308 sNI 310 (2102)
T PLN03200 308 ANI 310 (2102)
T ss_pred HHH
Confidence 873
No 3
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=2.4e-23 Score=173.79 Aligned_cols=217 Identities=23% Similarity=0.316 Sum_probs=200.5
Q ss_pred hhhhHHhHhhccccccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCC
Q 025930 6 LNTISVKSEDIRAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAED 85 (246)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~ 85 (246)
.+|.--+-|++..++||.++...|++.+|..+-++. |..+|+.+..+|.|++...++|+.++..|++|.|+.++++ .|
T Consensus 144 cnaVgCitnLaT~d~nk~kiA~sGaL~pltrLaksk-dirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s-~d 221 (550)
T KOG4224|consen 144 CNAVGCITNLATFDSNKVKIARSGALEPLTRLAKSK-DIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKS-GD 221 (550)
T ss_pred eeehhhhhhhhccccchhhhhhccchhhhHhhcccc-hhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhcc-CC
Confidence 355666778999999999999999999999987775 7778999999999999999999999999999999999999 57
Q ss_pred hHHHHHHHHHHHHhhCCchhHHHHHhcC--CHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCC
Q 025930 86 PQTLRMVAGAIANLCGNDKLQLKLRGEG--GIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDG 163 (246)
Q Consensus 86 ~~~~~~a~~aL~~L~~~~~~~~~l~~~g--~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g 163 (246)
..++.+++.++.|++.+...++++.+.+ .++.|++++.++++.++-.|.-+|+|++. +.+++..+.+.|
T Consensus 222 ~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlas---------dt~Yq~eiv~ag 292 (550)
T KOG4224|consen 222 LDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLAS---------DTEYQREIVEAG 292 (550)
T ss_pred hhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcc---------cchhhhHHHhcC
Confidence 9999999999999999999999999988 99999999999999999999999999994 468889999999
Q ss_pred ChHHHHHcccCCChhHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccCh
Q 025930 164 ALPWIVQNSNNEASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSSP 233 (246)
Q Consensus 164 ~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~ 233 (246)
.+|.++.+++++.-..-.....|+.|++.++-+..-|+++|.+.+|++++..+++++.+-+|..+|++..
T Consensus 293 ~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLA 362 (550)
T KOG4224|consen 293 SLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLA 362 (550)
T ss_pred CchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHh
Confidence 9999999999888778788899999999999998999999999999999999999999999999998643
No 4
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.90 E-value=3.5e-22 Score=198.03 Aligned_cols=223 Identities=17% Similarity=0.173 Sum_probs=182.6
Q ss_pred hhhhHHhHhhc-cccccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcC
Q 025930 6 LNTISVKSEDI-RAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANA 83 (246)
Q Consensus 6 ~~~~~~~~~~~-~~~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~ 83 (246)
.++.+.+.+++ .++++++.|++.|++|.|+++|+++ ++..++.|+++|++++.. ++++..+++.|++|.|++++++
T Consensus 422 ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~-s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s- 499 (2102)
T PLN03200 422 EELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLS-SEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLET- 499 (2102)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC-
Confidence 45667777887 5588899999999999999999997 788899999999999865 6789999999999999999998
Q ss_pred CChHHHHHHHHHHHHhhCCchhHHH-HHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccc-------------
Q 025930 84 EDPQTLRMVAGAIANLCGNDKLQLK-LRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRAST------------- 149 (246)
Q Consensus 84 ~~~~~~~~a~~aL~~L~~~~~~~~~-l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~------------- 149 (246)
.+.++++.|+|+|.|++.++++.+. +.+.|++++|+++|+++++..++.|+.+|.||....+....
T Consensus 500 ~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~ 579 (2102)
T PLN03200 500 GSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPE 579 (2102)
T ss_pred CCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChh
Confidence 5789999999999999976655555 44789999999999999999999999999999753211110
Q ss_pred ----------------cCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhcc-CchhHHHHHhCCcHHHHHHH
Q 025930 150 ----------------QGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQ-HEVNAKDMISGGALWELVRI 212 (246)
Q Consensus 150 ----------------~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~-~~~~~~~i~~~g~i~~L~~l 212 (246)
.+.+..++.....|+++.|++++.++++++++.|+++|.+++. +++.+..++..|++++|+.+
T Consensus 580 ~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~L 659 (2102)
T PLN03200 580 SKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKL 659 (2102)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHH
Confidence 0001111222357899999999999999999999999999987 66778999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHcc
Q 025930 213 SRDCSREDIRTLAHRTLTS 231 (246)
Q Consensus 213 l~~~~~~~~~~~A~~~L~~ 231 (246)
++.++.+. ++.|.++|.+
T Consensus 660 Lss~~~~v-~keAA~AL~n 677 (2102)
T PLN03200 660 LTNNTEAV-ATQSARALAA 677 (2102)
T ss_pred HhcCChHH-HHHHHHHHHH
Confidence 99766654 5556666543
No 5
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1e-21 Score=172.83 Aligned_cols=217 Identities=17% Similarity=0.293 Sum_probs=187.6
Q ss_pred hhhhhHHhHhhccc-cccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhc
Q 025930 5 ILNTISVKSEDIRA-QSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAAN 82 (246)
Q Consensus 5 ~~~~~~~~~~~~~~-~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~ 82 (246)
....+|.+-|.|.. .+.-+.++++|.+|.++.++.++ ++.+++.|+++|+|++.+ +..|..+.++|+++.|+.++..
T Consensus 127 q~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~-~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~ 205 (514)
T KOG0166|consen 127 QFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSP-SADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNK 205 (514)
T ss_pred HHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCC-cHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhcc
Confidence 34567888888654 44556777999999999999997 788999999999999988 7889999999999988877654
Q ss_pred C------------------------------------------CChHHHHHHHHHHHHhh-CCchhHHHHHhcCCHHHHH
Q 025930 83 A------------------------------------------EDPQTLRMVAGAIANLC-GNDKLQLKLRGEGGIKALL 119 (246)
Q Consensus 83 ~------------------------------------------~~~~~~~~a~~aL~~L~-~~~~~~~~l~~~g~i~~L~ 119 (246)
. .|+++...|+|||++|+ ...+..+.+++.|+++.|+
T Consensus 206 ~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV 285 (514)
T KOG0166|consen 206 SDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLV 285 (514)
T ss_pred ccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHH
Confidence 2 28899999999999999 5667778889999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCC-ChhHHHHHHHHHHHhcc-CchhH
Q 025930 120 GMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNE-ASPIRRHIELALCHLAQ-HEVNA 197 (246)
Q Consensus 120 ~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~-~~~v~~~a~~aL~~La~-~~~~~ 197 (246)
++|.+.+..++..|++++.|++. +++...+.+++.|++|.|..++... ...+++.|+|+|.|++. +++..
T Consensus 286 ~lL~~~~~~v~~PaLRaiGNIvt--------G~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qi 357 (514)
T KOG0166|consen 286 DLLGHSSPKVVTPALRAIGNIVT--------GSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQI 357 (514)
T ss_pred HHHcCCCcccccHHHhhccceee--------ccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHH
Confidence 99999999999999999999984 7899999999999999999999844 55699999999999966 77899
Q ss_pred HHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 025930 198 KDMISGGALWELVRISRDCSREDIRTLAHRTLTS 231 (246)
Q Consensus 198 ~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~ 231 (246)
+.++++|.+|.|+++++.++ -+.|+.|.+++.+
T Consensus 358 qaVida~l~p~Li~~l~~~e-f~~rKEAawaIsN 390 (514)
T KOG0166|consen 358 QAVIDANLIPVLINLLQTAE-FDIRKEAAWAISN 390 (514)
T ss_pred HHHHHcccHHHHHHHHhccc-hHHHHHHHHHHHh
Confidence 99999999999999999666 5566777777765
No 6
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.8e-21 Score=171.21 Aligned_cols=211 Identities=16% Similarity=0.278 Sum_probs=185.3
Q ss_pred HHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh
Q 025930 22 QEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC 100 (246)
Q Consensus 22 ~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~ 100 (246)
.+.++..|.||.+|..|...+++.++..|+++|.|++.+ .+.-+.+++.|.+|+|+.++.+ ++..++++|.|||.|++
T Consensus 102 i~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s-~~~~v~eQavWALgNIa 180 (514)
T KOG0166|consen 102 IDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSS-PSADVREQAVWALGNIA 180 (514)
T ss_pred HHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcC-CcHHHHHHHHHHHhccc
Confidence 566777799999999999877799999999999999888 5666788899999999999999 67999999999999999
Q ss_pred -CCchhHHHHHhcCCHHHHHHHhcCCCH-HHHHHHHHHHHHhhccccc-ccc----------------------------
Q 025930 101 -GNDKLQLKLRGEGGIKALLGMVRCGHP-DVLAQVARGIANFAKCESR-AST---------------------------- 149 (246)
Q Consensus 101 -~~~~~~~~l~~~g~i~~L~~ll~~~~~-~~~~~a~~~L~nL~~~~~~-~~~---------------------------- 149 (246)
..+.++..+.+.|++++|+.++...+. .+..++.++|.|||...++ +..
T Consensus 181 gds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WA 260 (514)
T KOG0166|consen 181 GDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWA 260 (514)
T ss_pred cCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 567889999999999999999987655 6889999999999986432 111
Q ss_pred -----cCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhcc-CchhHHHHHhCCcHHHHHHHHhcCCHHHHHH
Q 025930 150 -----QGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQ-HEVNAKDMISGGALWELVRISRDCSREDIRT 223 (246)
Q Consensus 150 -----~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~ 223 (246)
.+.++.-+.+++.|++|.|+.+|....+.++..|+++++|++. ++...+.++.+|+++.|..++..+..+.+++
T Consensus 261 lsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikk 340 (514)
T KOG0166|consen 261 LSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKK 340 (514)
T ss_pred HHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHH
Confidence 3668889999999999999999999999999999999999977 6677899999999999999999777777899
Q ss_pred HHHHHHccCh
Q 025930 224 LAHRTLTSSP 233 (246)
Q Consensus 224 ~A~~~L~~~~ 233 (246)
.|.+++.++.
T Consensus 341 EAcW~iSNIt 350 (514)
T KOG0166|consen 341 EACWTISNIT 350 (514)
T ss_pred HHHHHHHHhh
Confidence 9999998744
No 7
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.87 E-value=1.7e-21 Score=161.56 Aligned_cols=215 Identities=16% Similarity=0.239 Sum_probs=185.8
Q ss_pred hhhhHHhHhhccccccHHH-HHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcC
Q 025930 6 LNTISVKSEDIRAQSNQEK-IVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANA 83 (246)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~-i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~ 83 (246)
.-+.|++-|.+.......+ ++++|.+|.+|++|.++ ...+++.++++|+|++.| +..|..+.+.|+++.++.++.+.
T Consensus 133 fEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~-~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss 211 (526)
T COG5064 133 FEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSST-EDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSS 211 (526)
T ss_pred HHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCc-hHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhc
Confidence 3678999999876666655 45999999999999997 677899999999999988 67888899999999998887652
Q ss_pred -------------------------------------------CChHHHHHHHHHHHHhhC-CchhHHHHHhcCCHHHHH
Q 025930 84 -------------------------------------------EDPQTLRMVAGAIANLCG-NDKLQLKLRGEGGIKALL 119 (246)
Q Consensus 84 -------------------------------------------~~~~~~~~a~~aL~~L~~-~~~~~~~l~~~g~i~~L~ 119 (246)
.|+++...|+||+++|+. ..+..+.+.+.|+.+.|+
T Consensus 212 ~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLv 291 (526)
T COG5064 212 AIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLV 291 (526)
T ss_pred cchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHH
Confidence 188898899999999994 456667888999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhcc-CchhHH
Q 025930 120 GMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQ-HEVNAK 198 (246)
Q Consensus 120 ~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~-~~~~~~ 198 (246)
.+|.+++..++.-+++.+.|+.. +++...+.+++.|+++++..+|.++...+|+.|||+|.|+.. +.+..+
T Consensus 292 ElLs~~sa~iqtPalR~vGNIVT--------G~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiq 363 (526)
T COG5064 292 ELLSHESAKIQTPALRSVGNIVT--------GSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQ 363 (526)
T ss_pred HHhcCccccccCHHHHhhcCeee--------cCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHH
Confidence 99999999999999999999984 778889999999999999999999989999999999999965 888899
Q ss_pred HHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHc
Q 025930 199 DMISGGALWELVRISRDCSREDIRTLAHRTLT 230 (246)
Q Consensus 199 ~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~ 230 (246)
.+++++.+|.|++++...+-+. ++.|.+++.
T Consensus 364 avid~nliPpLi~lls~ae~k~-kKEACWAis 394 (526)
T COG5064 364 AVIDANLIPPLIHLLSSAEYKI-KKEACWAIS 394 (526)
T ss_pred HHHhcccchHHHHHHHHHHHHH-HHHHHHHHH
Confidence 9999999999999998655554 555566654
No 8
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.86 E-value=2.1e-21 Score=161.01 Aligned_cols=212 Identities=17% Similarity=0.266 Sum_probs=178.9
Q ss_pred HHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHH-HHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh
Q 025930 22 QEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQE-LIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC 100 (246)
Q Consensus 22 ~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~-~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~ 100 (246)
.+.++++|.+|.++++|+.......+-.|+++|.|++.....+. .++++|++|.+++++.+ .+..+++++.|||.|++
T Consensus 107 Iq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s-~~~~V~eQavWALGNiA 185 (526)
T COG5064 107 IQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSS-TEDDVREQAVWALGNIA 185 (526)
T ss_pred chhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcC-chHHHHHHHHHHhcccc
Confidence 68999999999999999665455567779999999999976665 45699999999999998 46889999999999999
Q ss_pred C-CchhHHHHHhcCCHHHHHHHhcCCC--HHHHHHHHHHHHHhhcccccccc----------------------------
Q 025930 101 G-NDKLQLKLRGEGGIKALLGMVRCGH--PDVLAQVARGIANFAKCESRAST---------------------------- 149 (246)
Q Consensus 101 ~-~~~~~~~l~~~g~i~~L~~ll~~~~--~~~~~~a~~~L~nL~~~~~~~~~---------------------------- 149 (246)
. ++.++..+.+.|++.+++.++.+.. ..+.+++.++|.|||...+++-.
T Consensus 186 GDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~W 265 (526)
T COG5064 186 GDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACW 265 (526)
T ss_pred CCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 5 5677899999999999999998654 47889999999999975332111
Q ss_pred ------cCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhcc-CchhHHHHHhCCcHHHHHHHHhcCCHHHHH
Q 025930 150 ------QGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQ-HEVNAKDMISGGALWELVRISRDCSREDIR 222 (246)
Q Consensus 150 ------~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~ 222 (246)
.+..+.-+++++.|..+.|+.+|.+++..++..|++.++|+.. ++...+.++.+|+++.+..++. +..+.+|
T Consensus 266 AiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs-~~ke~ir 344 (526)
T COG5064 266 AISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLS-SPKENIR 344 (526)
T ss_pred HHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhc-Chhhhhh
Confidence 3457788899999999999999999999999999999999977 5566789999999999999997 4555789
Q ss_pred HHHHHHHccChhH
Q 025930 223 TLAHRTLTSSPAF 235 (246)
Q Consensus 223 ~~A~~~L~~~~~~ 235 (246)
+.|.+++.++..=
T Consensus 345 KEaCWTiSNITAG 357 (526)
T COG5064 345 KEACWTISNITAG 357 (526)
T ss_pred hhhheeecccccC
Confidence 9999999875443
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.85 E-value=1.8e-19 Score=166.05 Aligned_cols=222 Identities=15% Similarity=0.168 Sum_probs=191.0
Q ss_pred hhhhHHhHhhccccccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCC
Q 025930 6 LNTISVKSEDIRAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAED 85 (246)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~ 85 (246)
...+.++.|++.+..++.+++..|+++.|+.+|+++ +..+...++..|.+|+...+++..+.+.|.++.|..++.+ ++
T Consensus 267 rv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~-n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s-~~ 344 (708)
T PF05804_consen 267 RVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRE-NEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPS-EN 344 (708)
T ss_pred HHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcC-CC
Confidence 456678999999999999999999999999999986 7788888999999999999999999999999999999998 57
Q ss_pred hHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCCh
Q 025930 86 PQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGAL 165 (246)
Q Consensus 86 ~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i 165 (246)
..+...++++|.|||.+++++..+++.|++|.|+.++.++ ..+..+..+|.++| .++++|..+...+++
T Consensus 345 ~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS---------~dd~~r~~f~~TdcI 413 (708)
T PF05804_consen 345 EDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLS---------MDDEARSMFAYTDCI 413 (708)
T ss_pred HHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhc---------cCHhhHHHHhhcchH
Confidence 8899999999999999999999999999999999999865 45567899999999 457899999999999
Q ss_pred HHHHHcccC-CChhHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccChhHHHHHHHhhh
Q 025930 166 PWIVQNSNN-EASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSSPAFQAEMRRLRI 244 (246)
Q Consensus 166 ~~Lv~ll~~-~~~~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~~~~~e~~~~~~ 244 (246)
|.+++++.. +++++...+...+.|||.++.+.+.+.+.|+++.|++......++. ..+.+.++.......+..-+
T Consensus 414 p~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~l----LlKlIRNiS~h~~~~k~~f~ 489 (708)
T PF05804_consen 414 PQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPL----LLKLIRNISQHDGPLKELFV 489 (708)
T ss_pred HHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHH----HHHHHHHHHhcCchHHHHHH
Confidence 999997654 4677888889999999999999999999999999999887544333 34566665555544444433
No 10
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.80 E-value=7.4e-18 Score=138.98 Aligned_cols=194 Identities=21% Similarity=0.232 Sum_probs=166.7
Q ss_pred HHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCc
Q 025930 24 KIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGND 103 (246)
Q Consensus 24 ~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~ 103 (246)
.+.+.+-+++|+.+|+...||.+++.|..++++.+..+.++..+.+.||++.+..++.+ +++.+++.|+++|.|++.+.
T Consensus 7 ~~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~-p~~~vr~~AL~aL~Nls~~~ 85 (254)
T PF04826_consen 7 NILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLND-PNPSVREKALNALNNLSVND 85 (254)
T ss_pred CCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCC-CChHHHHHHHHHHHhcCCCh
Confidence 34788899999999998889999999999999999999999999999999999999999 68999999999999999999
Q ss_pred hhHHHHHhcCCHHHHHHHhcC--CCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHH
Q 025930 104 KLQLKLRGEGGIKALLGMVRC--GHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRR 181 (246)
Q Consensus 104 ~~~~~l~~~g~i~~L~~ll~~--~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~ 181 (246)
+++..+-.+ ++.+.+...+ .++.++..++++|+||+.. ++.+..+. +.+|.++.++..++..+|.
T Consensus 86 en~~~Ik~~--i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~---------~~~~~~l~--~~i~~ll~LL~~G~~~~k~ 152 (254)
T PF04826_consen 86 ENQEQIKMY--IPQVCEETVSSPLNSEVQLAGLRLLTNLTVT---------NDYHHMLA--NYIPDLLSLLSSGSEKTKV 152 (254)
T ss_pred hhHHHHHHH--HHHHHHHHhcCCCCCHHHHHHHHHHHccCCC---------cchhhhHH--hhHHHHHHHHHcCChHHHH
Confidence 999887543 6666664443 3788999999999999953 46666665 4699999999999999999
Q ss_pred HHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 025930 182 HIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTS 231 (246)
Q Consensus 182 ~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~ 231 (246)
.++++|.||+.++...+.++.+++...++.++..+.+++....+.....+
T Consensus 153 ~vLk~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~n 202 (254)
T PF04826_consen 153 QVLKVLVNLSENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFEN 202 (254)
T ss_pred HHHHHHHHhccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999877666555444444433
No 11
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.75 E-value=1.8e-16 Score=146.32 Aligned_cols=210 Identities=16% Similarity=0.188 Sum_probs=178.1
Q ss_pred hhhhHHhHhhccccccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCC
Q 025930 6 LNTISVKSEDIRAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAED 85 (246)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~ 85 (246)
+.+++.+++++...+||..+.+.|+|++|+.+++++ +..++..+.++|.||+.+++.|..+++.|.+|.|+.++.+.
T Consensus 308 il~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~-~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~-- 384 (708)
T PF05804_consen 308 ILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSE-NEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDP-- 384 (708)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC--
Confidence 457789999999999999999999999999999986 77788999999999999999999999999999999999863
Q ss_pred hHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhc-CCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCC
Q 025930 86 PQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVR-CGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGA 164 (246)
Q Consensus 86 ~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~ 164 (246)
..+..++.+|.++|.+++++..+...+++|.+++++- .+++.+...++.++.||+. ++.+.+.+.+.|+
T Consensus 385 -~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~---------~~rnaqlm~~g~g 454 (708)
T PF05804_consen 385 -NFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLAL---------NKRNAQLMCEGNG 454 (708)
T ss_pred -chHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhc---------CHHHHHHHHhcCc
Confidence 2555799999999999999999999999999999875 4566677778888999994 4688889999899
Q ss_pred hHHHHHcccCCChhHHHHHHHHHHHhccCc-hhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccCh
Q 025930 165 LPWIVQNSNNEASPIRRHIELALCHLAQHE-VNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSSP 233 (246)
Q Consensus 165 i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~-~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~ 233 (246)
++.|+........ ......+.|++.++ ..+..+. +.+..|+.++..+++++..-.+.++|++.+
T Consensus 455 L~~L~~ra~~~~D---~lLlKlIRNiS~h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~ 519 (708)
T PF05804_consen 455 LQSLMKRALKTRD---PLLLKLIRNISQHDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILANLT 519 (708)
T ss_pred HHHHHHHHHhccc---HHHHHHHHHHHhcCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHhcc
Confidence 9999987755433 22457999999977 4554444 488889999988888888888888888764
No 12
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=2.6e-16 Score=130.64 Aligned_cols=214 Identities=18% Similarity=0.238 Sum_probs=181.1
Q ss_pred ccccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChH---HHHHHHH
Q 025930 18 AQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQ---TLRMVAG 94 (246)
Q Consensus 18 ~~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~---~~~~a~~ 94 (246)
..++...|+..|++..|++.++.+-||......+.+|..++..++....|.+.||+..++.++.+..+.+ +.+.++.
T Consensus 230 ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~ls 309 (461)
T KOG4199|consen 230 AHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLS 309 (461)
T ss_pred hhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHH
Confidence 3456778999999999999999998888888899999999999999999999999999999998744433 4568889
Q ss_pred HHHHhhCCchhHHHHHhcCCHHHHHHHhc--CCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcc
Q 025930 95 AIANLCGNDKLQLKLRGEGGIKALLGMVR--CGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNS 172 (246)
Q Consensus 95 aL~~L~~~~~~~~~l~~~g~i~~L~~ll~--~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll 172 (246)
.|+.|+.++.++..+++.|+.+.++.++- +.+|.+.+.++.+++-||. ..++.-..+++.|+-...++.+
T Consensus 310 lLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~L--------R~pdhsa~~ie~G~a~~avqAm 381 (461)
T KOG4199|consen 310 LLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCL--------RSPDHSAKAIEAGAADLAVQAM 381 (461)
T ss_pred HHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHh--------cCcchHHHHHhcchHHHHHHHH
Confidence 99999999999999999999999999884 6789999999999999995 5678888888899999999998
Q ss_pred cCC--ChhHHHHHHHHHHHhcc-CchhHHHHHhCCcHHHHHHHHhc--CCHHHHHHHHHHHHccChhHHHHHH
Q 025930 173 NNE--ASPIRRHIELALCHLAQ-HEVNAKDMISGGALWELVRISRD--CSREDIRTLAHRTLTSSPAFQAEMR 240 (246)
Q Consensus 173 ~~~--~~~v~~~a~~aL~~La~-~~~~~~~i~~~g~i~~L~~ll~~--~~~~~~~~~A~~~L~~~~~~~~e~~ 240 (246)
+.. ...+++++++.+.|+.. +.++++.+... |+..|++..+. .+.+....+|.|-|....+.++||+
T Consensus 382 kahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~-GiE~Li~~A~~~h~tce~~akaALRDLGc~v~lre~wt 453 (461)
T KOG4199|consen 382 KAHPVAAQVQRNACNMIRNIVVRSAENRTILLAN-GIEKLIRTAKANHETCEAAAKAALRDLGCDVYLREEWT 453 (461)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhc-cHHHHHHHHHhcCccHHHHHHHHHHhcCcchhhHHHhc
Confidence 655 67899999999999976 66676666655 55666666653 4566666777888889999999996
No 13
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.71 E-value=3.4e-15 Score=124.06 Aligned_cols=215 Identities=16% Similarity=0.202 Sum_probs=182.2
Q ss_pred hHHhHhhccccccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchH----------HHHHhcCcHHHHHH
Q 025930 9 ISVKSEDIRAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQ----------ELIMTQGGIGLLST 78 (246)
Q Consensus 9 ~~~~~~~~~~~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~----------~~i~~~g~i~~L~~ 78 (246)
.|+=+-+-.++-||+.+++.|+.+-+.+.+.......+.+..+++++-+..+++.| +.|++.|+...|++
T Consensus 169 ~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~E 248 (461)
T KOG4199|consen 169 QWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTE 248 (461)
T ss_pred HHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHH
Confidence 34445567889999999999999999977766433345677899999998876554 78888999999999
Q ss_pred HHhcCCChHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhcC-CCHH---HHHHHHHHHHHhhcccccccccCChh
Q 025930 79 TAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRC-GHPD---VLAQVARGIANFAKCESRASTQGTKT 154 (246)
Q Consensus 79 ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~~-~~~~---~~~~a~~~L~nL~~~~~~~~~~~~~~ 154 (246)
.+.-+-|+.+...++.+|..|+-+.+..+.+.+.||++.|++++.+ .+.+ +.+.++.+|+-|+ ++++
T Consensus 249 al~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralA---------G~Ds 319 (461)
T KOG4199|consen 249 ALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALA---------GSDS 319 (461)
T ss_pred HHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHh---------CCCc
Confidence 9998888999999999999999999999999999999999999985 3333 5578889999999 8889
Q ss_pred hhHHHHhCCChHHHHHcc--cCCChhHHHHHHHHHHHhcc-CchhHHHHHhCCcHHHHHHHHhc-CCHHHHHHHHHHHHc
Q 025930 155 GRSLLIDDGALPWIVQNS--NNEASPIRRHIELALCHLAQ-HEVNAKDMISGGALWELVRISRD-CSREDIRTLAHRTLT 230 (246)
Q Consensus 155 ~~~~l~~~g~i~~Lv~ll--~~~~~~v~~~a~~aL~~La~-~~~~~~~i~~~g~i~~L~~ll~~-~~~~~~~~~A~~~L~ 230 (246)
++..+++.|+.+.++.++ +.++|.+...++.+++.||. .|++...+++.|+....++-++. +....+++.|...+.
T Consensus 320 vKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IR 399 (461)
T KOG4199|consen 320 VKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIR 399 (461)
T ss_pred hHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 999999999999999988 44589999999999999997 88999999999999999999976 456667777777776
Q ss_pred cC
Q 025930 231 SS 232 (246)
Q Consensus 231 ~~ 232 (246)
++
T Consensus 400 Ni 401 (461)
T KOG4199|consen 400 NI 401 (461)
T ss_pred HH
Confidence 53
No 14
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.57 E-value=1.8e-13 Score=100.10 Aligned_cols=116 Identities=28% Similarity=0.477 Sum_probs=106.0
Q ss_pred HHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCC
Q 025930 24 KIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGN 102 (246)
Q Consensus 24 ~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~ 102 (246)
.+++.|+++.|+++++++ ++.++..++.+|++++.+ ++.+..+++.|+++.+++++.+ +++.++..++++|.+++.+
T Consensus 2 ~~~~~~~i~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~-~~~~v~~~a~~~L~~l~~~ 79 (120)
T cd00020 2 AVIQAGGLPALVSLLSSS-DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS-EDEEVVKAALWALRNLAAG 79 (120)
T ss_pred hHHHcCChHHHHHHHHcC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC-CCHHHHHHHHHHHHHHccC
Confidence 467899999999999986 678899999999999988 8899999999999999999998 5799999999999999965
Q ss_pred c-hhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 025930 103 D-KLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFA 141 (246)
Q Consensus 103 ~-~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~ 141 (246)
+ .....+.+.|+++.+++.+..++.++++.++.+|.||+
T Consensus 80 ~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 80 PEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred cHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 5 56677788999999999999999999999999999997
No 15
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.56 E-value=2.1e-13 Score=99.66 Aligned_cols=118 Identities=21% Similarity=0.382 Sum_probs=107.3
Q ss_pred HHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCC-chhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhccc
Q 025930 66 LIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGN-DKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCE 144 (246)
Q Consensus 66 ~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~ 144 (246)
.+++.|+++.+++++.+ .+..++..++++|.+++.+ ++....+++.|+++.+++++.++++.++..++.+|+|++.
T Consensus 2 ~~~~~~~i~~l~~~l~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~-- 78 (120)
T cd00020 2 AVIQAGGLPALVSLLSS-SDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAA-- 78 (120)
T ss_pred hHHHcCChHHHHHHHHc-CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHcc--
Confidence 46789999999999998 4688999999999999955 8888999999999999999999999999999999999995
Q ss_pred ccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhcc
Q 025930 145 SRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQ 192 (246)
Q Consensus 145 ~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~ 192 (246)
+.+..+..+.+.|+++.++.++...+.++++.++++|.+|+.
T Consensus 79 ------~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 79 ------GPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred ------CcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 445778888899999999999999999999999999999874
No 16
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.55 E-value=6e-14 Score=133.53 Aligned_cols=232 Identities=19% Similarity=0.240 Sum_probs=187.8
Q ss_pred ehh-hhhHHhHhhccccccHHHHHHhCCHHHHHHHhcCC--------CC---HHHHHHHHHHHHHhcCCc-chHHHH-Hh
Q 025930 4 QIL-NTISVKSEDIRAQSNQEKIVEAGGLTSLLMLLGSS--------ED---ETIHRVAAGAIANLAMNE-TNQELI-MT 69 (246)
Q Consensus 4 ~~~-~~~~~~~~~~~~~~~~~~i~~~g~i~~Li~ll~~~--------~~---~~~~~~a~~~L~~la~~~-~~~~~i-~~ 69 (246)
|.+ +++.+|-.+++.+++|..+-+-|+++.+-+++.-. +| -.+++.|..+|.||++++ .|+..+ ..
T Consensus 313 H~lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~ 392 (2195)
T KOG2122|consen 313 HQLCAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQ 392 (2195)
T ss_pred hhhHHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhh
Confidence 344 77888999999999999999999999998877541 11 237788999999999884 456555 46
Q ss_pred cCcHHHHHHHHhcCCChHHHHHHHHHHHHhhC--CchhHHHHHhcCCHHHHHHHh-cCCCHHHHHHHHHHHHHhhcc--c
Q 025930 70 QGGIGLLSTTAANAEDPQTLRMVAGAIANLCG--NDKLQLKLRGEGGIKALLGMV-RCGHPDVLAQVARGIANFAKC--E 144 (246)
Q Consensus 70 ~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~--~~~~~~~l~~~g~i~~L~~ll-~~~~~~~~~~a~~~L~nL~~~--~ 144 (246)
.|.++.++..|.+. .+++....++.|+||+. +...++.+-+.|-+..|+.+. +...+..++.++.+||||+.+ +
T Consensus 393 rgfMeavVAQL~s~-peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcte 471 (2195)
T KOG2122|consen 393 RGFMEAVVAQLISA-PEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTE 471 (2195)
T ss_pred hhHHHHHHHHHhcC-hHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccc
Confidence 78899999888873 46788899999999994 455677778899888888765 455667889999999999863 4
Q ss_pred ccccc----------------------------------------cCChhhhHHHHhCCChHHHHHcccCCChhHHHHHH
Q 025930 145 SRAST----------------------------------------QGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIE 184 (246)
Q Consensus 145 ~~~~~----------------------------------------~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~ 184 (246)
++..+ ....+.|+.+.+.+++..|++.|+++...+..++|
T Consensus 472 NKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaC 551 (2195)
T KOG2122|consen 472 NKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNAC 551 (2195)
T ss_pred cchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecch
Confidence 44333 12478899999999999999999999999999999
Q ss_pred HHHHHhcc-CchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccChhHHH
Q 025930 185 LALCHLAQ-HEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSSPAFQA 237 (246)
Q Consensus 185 ~aL~~La~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~~~~~ 237 (246)
++||||+- +++..+.+.+.|+++-|..++. +.++.+..-+..+|+|.-.|++
T Consensus 552 GTLWNLSAR~p~DQq~LwD~gAv~mLrnLIh-SKhkMIa~GSaaALrNLln~RP 604 (2195)
T KOG2122|consen 552 GTLWNLSARSPEDQQMLWDDGAVPMLRNLIH-SKHKMIAMGSAAALRNLLNFRP 604 (2195)
T ss_pred hhhhhhhcCCHHHHHHHHhcccHHHHHHHHh-hhhhhhhhhHHHHHHHHhcCCc
Confidence 99999955 9999899999999999999998 5677777777777777666653
No 17
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.55 E-value=8e-13 Score=120.47 Aligned_cols=224 Identities=22% Similarity=0.259 Sum_probs=167.2
Q ss_pred hhhhHHhHhhcccccc-HHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC---cchHHHHHhcCcHHHHHHHHh
Q 025930 6 LNTISVKSEDIRAQSN-QEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN---ETNQELIMTQGGIGLLSTTAA 81 (246)
Q Consensus 6 ~~~~~~~~~~~~~~~~-~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~---~~~~~~i~~~g~i~~L~~ll~ 81 (246)
.++.+-+..+|+.++. |..+..-|+|+.||.+|++. ...+++.||++|.||... ++|+-.|.++|||+.++.+++
T Consensus 251 snaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~-~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr 329 (717)
T KOG1048|consen 251 SNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHR-NDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLR 329 (717)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCC-cHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHH
Confidence 4566777777776654 44566789999999999996 778999999999999877 468999999999999999998
Q ss_pred cCCChHHHHHHHHHHHHhhCCchh-------------------------------------------------------H
Q 025930 82 NAEDPQTLRMVAGAIANLCGNDKL-------------------------------------------------------Q 106 (246)
Q Consensus 82 ~~~~~~~~~~a~~aL~~L~~~~~~-------------------------------------------------------~ 106 (246)
...|.++++...++|+||++++.. +
T Consensus 330 ~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR 409 (717)
T KOG1048|consen 330 HTQDDEVRELITGILWNLSSNDALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAR 409 (717)
T ss_pred hhcchHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHH
Confidence 755666766777777776655333 3
Q ss_pred HHHHh-cCCHHHHHHHhc------CCCHHHHHHHHHHHHHhhcccccccc------------------------------
Q 025930 107 LKLRG-EGGIKALLGMVR------CGHPDVLAQVARGIANFAKCESRAST------------------------------ 149 (246)
Q Consensus 107 ~~l~~-~g~i~~L~~ll~------~~~~~~~~~a~~~L~nL~~~~~~~~~------------------------------ 149 (246)
+++.+ .|.|+.|+..+. ..+....++|..+++||+--...++.
T Consensus 410 ~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~ 489 (717)
T KOG1048|consen 410 EQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKK 489 (717)
T ss_pred HHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchh
Confidence 44432 356777776664 23455677888888888742110000
Q ss_pred --------------------------------------------------------------cCChhhhHHH-HhCCChH
Q 025930 150 --------------------------------------------------------------QGTKTGRSLL-IDDGALP 166 (246)
Q Consensus 150 --------------------------------------------------------------~~~~~~~~~l-~~~g~i~ 166 (246)
......+..+ .++.++|
T Consensus 490 ~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~ 569 (717)
T KOG1048|consen 490 RKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLP 569 (717)
T ss_pred hhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCcc
Confidence 1124555555 7889999
Q ss_pred HHHHcccCCChhHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCH-----HHHHHHHHHHHcc
Q 025930 167 WIVQNSNNEASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSR-----EDIRTLAHRTLTS 231 (246)
Q Consensus 167 ~Lv~ll~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~-----~~~~~~A~~~L~~ 231 (246)
+|+.++..+++.+.+.++.+|.||+.+..+++.|. .++++.|++.+.++.+ +++-..+.-+|.+
T Consensus 570 ~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~n 638 (717)
T KOG1048|consen 570 PLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNN 638 (717)
T ss_pred HHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHH
Confidence 99999999999999999999999999999976666 8999999999987665 5555555555554
No 18
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.53 E-value=1.8e-12 Score=107.02 Aligned_cols=193 Identities=16% Similarity=0.144 Sum_probs=156.0
Q ss_pred hhHHhHhhccccccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHH-HhcCCCh
Q 025930 8 TISVKSEDIRAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTT-AANAEDP 86 (246)
Q Consensus 8 ~~~~~~~~~~~~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~l-l~~~~~~ 86 (246)
.+..+.+.+..+.+++.|.+.|+++.+..++..+ ++.++..|..+|.|++.+.+++..+-. .++.+... .+..-|.
T Consensus 33 al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p-~~~vr~~AL~aL~Nls~~~en~~~Ik~--~i~~Vc~~~~s~~lns 109 (254)
T PF04826_consen 33 ALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDP-NPSVREKALNALNNLSVNDENQEQIKM--YIPQVCEETVSSPLNS 109 (254)
T ss_pred HHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCC-ChHHHHHHHHHHHhcCCChhhHHHHHH--HHHHHHHHHhcCCCCC
Confidence 4566778899999999999999999999999996 889999999999999999999998754 46666554 4443467
Q ss_pred HHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChH
Q 025930 87 QTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALP 166 (246)
Q Consensus 87 ~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~ 166 (246)
.++..++++|.||+..++.+..+.. .++.++.++.+++..++.++..+|.||+. ++.....+...++++
T Consensus 110 ~~Q~agLrlL~nLtv~~~~~~~l~~--~i~~ll~LL~~G~~~~k~~vLk~L~nLS~---------np~~~~~Ll~~q~~~ 178 (254)
T PF04826_consen 110 EVQLAGLRLLTNLTVTNDYHHMLAN--YIPDLLSLLSSGSEKTKVQVLKVLVNLSE---------NPDMTRELLSAQVLS 178 (254)
T ss_pred HHHHHHHHHHHccCCCcchhhhHHh--hHHHHHHHHHcCChHHHHHHHHHHHHhcc---------CHHHHHHHHhccchh
Confidence 8888999999999977777666644 69999999999999999999999999995 467778888889999
Q ss_pred HHHHcccCC-ChhHHHHHHHHHHHhccCchhH--HHHHhCCcHHHHHHHHh
Q 025930 167 WIVQNSNNE-ASPIRRHIELALCHLAQHEVNA--KDMISGGALWELVRISR 214 (246)
Q Consensus 167 ~Lv~ll~~~-~~~v~~~a~~aL~~La~~~~~~--~~i~~~g~i~~L~~ll~ 214 (246)
.++.++... +.++-..++....|+..+-... ........-..|..++.
T Consensus 179 ~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~ 229 (254)
T PF04826_consen 179 SFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFG 229 (254)
T ss_pred HHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHc
Confidence 999999876 6788899999999996633322 22224556666775554
No 19
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.52 E-value=2.8e-13 Score=123.40 Aligned_cols=173 Identities=20% Similarity=0.279 Sum_probs=147.0
Q ss_pred CHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh---CCchh
Q 025930 30 GLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC---GNDKL 105 (246)
Q Consensus 30 ~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~---~~~~~ 105 (246)
-+|..+.+|.+. ++.+|..|+.-+-.++.. .+.|..+.+.|||+.|+.++.+ ...+++.+||+||.||. .+.+|
T Consensus 234 ~lpe~i~mL~~q-~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~-~~~evq~~acgaLRNLvf~~~~~~N 311 (717)
T KOG1048|consen 234 TLPEVISMLMSQ-DPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDH-RNDEVQRQACGALRNLVFGKSTDSN 311 (717)
T ss_pred ccHHHHHHHhcc-ChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcC-CcHHHHHHHHHHHHhhhcccCCccc
Confidence 378889999987 788899999999999877 6788999999999999999998 57999999999999999 44579
Q ss_pred HHHHHhcCCHHHHHHHhcC-CCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHccc-CC--------
Q 025930 106 QLKLRGEGGIKALLGMVRC-GHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSN-NE-------- 175 (246)
Q Consensus 106 ~~~l~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~-~~-------- 175 (246)
+-.+.+.++|+.++.+++. .|.++++.+.++|+||+++ +..+..++.. .++.|-+..- +.
T Consensus 312 Klai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~---------D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~ 381 (717)
T KOG1048|consen 312 KLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN---------DALKMLIITS-ALSTLTDNVIIPHSGWEEEPA 381 (717)
T ss_pred chhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch---------hHHHHHHHHH-HHHHHHHhhcccccccCCCCc
Confidence 9999999999999999985 7899999999999999965 4666666644 4555544321 11
Q ss_pred -----ChhHHHHHHHHHHHhcc-CchhHHHHHh-CCcHHHHHHHHh
Q 025930 176 -----ASPIRRHIELALCHLAQ-HEVNAKDMIS-GGALWELVRISR 214 (246)
Q Consensus 176 -----~~~v~~~a~~aL~~La~-~~~~~~~i~~-~g~i~~L~~ll~ 214 (246)
+.++-.++.+||.|++. ..+.|+.|.+ .|.++.|+.+++
T Consensus 382 ~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq 427 (717)
T KOG1048|consen 382 PRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQ 427 (717)
T ss_pred ccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHH
Confidence 36788999999999988 8899999998 599999999998
No 20
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.38 E-value=1.1e-11 Score=118.55 Aligned_cols=179 Identities=18% Similarity=0.181 Sum_probs=144.6
Q ss_pred HHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcC-----------CChHHHHHHHHHHHHhh-CCchhHHHHH-hcCCH
Q 025930 49 VAAGAIANLAMNETNQELIMTQGGIGLLSTTAANA-----------EDPQTLRMVAGAIANLC-GNDKLQLKLR-GEGGI 115 (246)
Q Consensus 49 ~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~-----------~~~~~~~~a~~aL~~L~-~~~~~~~~l~-~~g~i 115 (246)
.|..+|..+++|+++|+.+-+.||+..+-+++.-. .+..++.++..||.||+ .+..||..++ .-|.+
T Consensus 317 aA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfM 396 (2195)
T KOG2122|consen 317 AALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFM 396 (2195)
T ss_pred HHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHH
Confidence 36666888899999999999999999988876431 13457999999999999 7788998887 56899
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHccc-CCChhHHHHHHHHHHHhc-cC
Q 025930 116 KALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSN-NEASPIRRHIELALCHLA-QH 193 (246)
Q Consensus 116 ~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~-~~~~~v~~~a~~aL~~La-~~ 193 (246)
..++..|.+..+++.+-.+++|+||+|- -+...++.+.+.|-+..|+.... ...+..-+..+.|||||+ ++
T Consensus 397 eavVAQL~s~peeL~QV~AsvLRNLSWR-------AD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHc 469 (2195)
T KOG2122|consen 397 EAVVAQLISAPEELLQVYASVLRNLSWR-------ADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHC 469 (2195)
T ss_pred HHHHHHHhcChHHHHHHHHHHHHhcccc-------ccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcc
Confidence 9999999999889999999999999994 44677888889999999988654 445567788899999995 47
Q ss_pred chhHHHHHh-CCcHHHHHHHHhcC---CHHHHHHHHHHHHccChh
Q 025930 194 EVNAKDMIS-GGALWELVRISRDC---SREDIRTLAHRTLTSSPA 234 (246)
Q Consensus 194 ~~~~~~i~~-~g~i~~L~~ll~~~---~~~~~~~~A~~~L~~~~~ 234 (246)
.+|+..|.. .|++..|+.+|... ..-.+.+-|..+|++-.+
T Consensus 470 teNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS 514 (2195)
T KOG2122|consen 470 TENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSS 514 (2195)
T ss_pred cccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHh
Confidence 788888876 79999999999753 334455777777776433
No 21
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.35 E-value=1.3e-10 Score=105.57 Aligned_cols=180 Identities=13% Similarity=0.129 Sum_probs=161.3
Q ss_pred HhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcch-HHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchh
Q 025930 27 EAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETN-QELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKL 105 (246)
Q Consensus 27 ~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~-~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~ 105 (246)
..+..+.|...|.++ ++.++..++..|+++..+.+. ...+.+.+.++.++..+.+ +|..+.+.|..+|.+++.++..
T Consensus 75 ~~~~~~~L~~gL~h~-~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~-~d~~Va~~A~~~L~~l~~~~~~ 152 (503)
T PF10508_consen 75 LPQYQPFLQRGLTHP-SPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRD-PDLSVAKAAIKALKKLASHPEG 152 (503)
T ss_pred HHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcC-CcHHHHHHHHHHHHHHhCCchh
Confidence 567788899999996 889999999999999888554 5566678889999999988 6799999999999999988888
Q ss_pred HHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHH
Q 025930 106 QLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIEL 185 (246)
Q Consensus 106 ~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~ 185 (246)
-+.++..+.+..|..++...++.++.++..++.+++. .+++..+.+.+.|.++.++..+.++|.-++..++.
T Consensus 153 ~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~--------~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnale 224 (503)
T PF10508_consen 153 LEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIAS--------HSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALE 224 (503)
T ss_pred HHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHh--------cCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHH
Confidence 7888888889999999988788999999999999985 55788999999999999999999999999999999
Q ss_pred HHHHhccCchhHHHHHhCCcHHHHHHHHhcC
Q 025930 186 ALCHLAQHEVNAKDMISGGALWELVRISRDC 216 (246)
Q Consensus 186 aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~ 216 (246)
.|..|+..+.+.+-+.+.|.++.|..++...
T Consensus 225 ll~~La~~~~g~~yL~~~gi~~~L~~~l~~~ 255 (503)
T PF10508_consen 225 LLSELAETPHGLQYLEQQGIFDKLSNLLQDS 255 (503)
T ss_pred HHHHHHcChhHHHHHHhCCHHHHHHHHHhcc
Confidence 9999999999999999999999999999764
No 22
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=1.1e-10 Score=101.61 Aligned_cols=225 Identities=16% Similarity=0.201 Sum_probs=170.7
Q ss_pred hhhHHhHhhccccccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCCh
Q 025930 7 NTISVKSEDIRAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDP 86 (246)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~ 86 (246)
.++.++.|+++...+|.+++..|.+|.|..++++. ...--|..+|+.++.+++.+..+.....|+.+.+.+-++.+.
T Consensus 364 ~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d---~~~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~~~ 440 (791)
T KOG1222|consen 364 ATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSD---TKHGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGTGS 440 (791)
T ss_pred HHHHHhhhccccccccHHHhhccchHHHHHHhCCc---ccchhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 47889999999999999999999999999999874 223448899999999999999999999999998877666777
Q ss_pred HHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHh-cC-------------------------------------CCHH
Q 025930 87 QTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMV-RC-------------------------------------GHPD 128 (246)
Q Consensus 87 ~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll-~~-------------------------------------~~~~ 128 (246)
++.........|+|.+..|.+.+++-.++..|++.. ++ .++.
T Consensus 441 ~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~ 520 (791)
T KOG1222|consen 441 EVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSES 520 (791)
T ss_pred eecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHH
Confidence 777666677788888888877776655666554421 11 1222
Q ss_pred HHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCC--ChhHHHHHHHHHHHhccCchhHHHHHhCCcH
Q 025930 129 VLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNE--ASPIRRHIELALCHLAQHEVNAKDMISGGAL 206 (246)
Q Consensus 129 ~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~--~~~v~~~a~~aL~~La~~~~~~~~i~~~g~i 206 (246)
-...+.++++||... +-+..+.+-+.+.+|++-..++++ ..++.....-+++.++.+.....-+..+|.+
T Consensus 521 F~~EClGtlanL~v~--------dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~~i 592 (791)
T KOG1222|consen 521 FGLECLGTLANLKVT--------DLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAKLI 592 (791)
T ss_pred HHHHHHHHHhhcccC--------CCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCccccH
Confidence 334666888888753 356777777899999999999887 4567788888899999988887888889999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH-ccChhHHHHHHHhhh
Q 025930 207 WELVRISRDCSREDIRTLAHRTL-TSSPAFQAEMRRLRI 244 (246)
Q Consensus 207 ~~L~~ll~~~~~~~~~~~A~~~L-~~~~~~~~e~~~~~~ 244 (246)
+.|+++++.++.++ +.....+ .+.+-.+||.+|-.+
T Consensus 593 ~tlieLL~a~QeDD--EfV~QiiyVF~Q~l~He~tr~~m 629 (791)
T KOG1222|consen 593 DTLIELLQACQEDD--EFVVQIIYVFLQFLKHELTRRLM 629 (791)
T ss_pred HHHHHHHHhhcccc--hHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998755443 2223333 556666777766543
No 23
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=3.4e-10 Score=95.59 Aligned_cols=174 Identities=17% Similarity=0.154 Sum_probs=149.4
Q ss_pred HhHhhccccccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcCCChHHH
Q 025930 11 VKSEDIRAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANAEDPQTL 89 (246)
Q Consensus 11 ~~~~~~~~~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~ 89 (246)
-+..+..+-+|...++.-||+++++..+.++ +..++..|+++|+.++.+ +..+..+.+.|+.+.|+.++.+.++..++
T Consensus 106 ~Le~lve~iDnAndl~~~ggl~~ll~~l~~~-~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r 184 (342)
T KOG2160|consen 106 NLEELVEDIDNANDLISLGGLVPLLGYLENS-DAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVR 184 (342)
T ss_pred HHHHHHHhhhhHHhHhhccCHHHHHHHhcCC-cHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHH
Confidence 3445566778899999999999999999986 889999999999999877 88999999999999999999986667788
Q ss_pred HHHHHHHHHhh-CCchhHHHHHhcCCHHHHHHHhcC--CCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChH
Q 025930 90 RMVAGAIANLC-GNDKLQLKLRGEGGIKALLGMVRC--GHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALP 166 (246)
Q Consensus 90 ~~a~~aL~~L~-~~~~~~~~l~~~g~i~~L~~ll~~--~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~ 166 (246)
..|+.|++.+. +++.....+...++...|.+++.+ .+...+..++..+..|.. .....+..+...+...
T Consensus 185 ~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~--------~~~s~~d~~~~~~f~~ 256 (342)
T KOG2160|consen 185 TKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQ--------EDKSDEDIASSLGFQR 256 (342)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHH--------hhhhhhhHHHHhhhhH
Confidence 89999999998 678889999999999999999998 577788999999999885 3344555666677778
Q ss_pred HHHHcccCCChhHHHHHHHHHHHhccC
Q 025930 167 WIVQNSNNEASPIRRHIELALCHLAQH 193 (246)
Q Consensus 167 ~Lv~ll~~~~~~v~~~a~~aL~~La~~ 193 (246)
.++.+....+.++++.++.++..+...
T Consensus 257 ~~~~l~~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 257 VLENLISSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred HHHHHhhccchhhhHHHHHHHHHHHHH
Confidence 888888888999999999988888653
No 24
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=99.21 E-value=1.6e-10 Score=84.65 Aligned_cols=125 Identities=14% Similarity=0.168 Sum_probs=113.0
Q ss_pred hCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHH
Q 025930 28 AGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQL 107 (246)
Q Consensus 28 ~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~ 107 (246)
-+.++.|+.-++...+.+.++....-|+|.+.|+.|-..+.+.+.+..++.-++. .|+.+.+.+.+.|+|+|-++.+++
T Consensus 15 l~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e-~ne~LvefgIgglCNlC~d~~n~~ 93 (173)
T KOG4646|consen 15 LEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEE-QNELLVEFGIGGLCNLCLDKTNAK 93 (173)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhc-ccHHHHHHhHHHHHhhccChHHHH
Confidence 4568899999998888889999999999999999999999999999999999998 689999999999999999999999
Q ss_pred HHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHh
Q 025930 108 KLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLID 161 (246)
Q Consensus 108 ~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~ 161 (246)
.|.+.+++|..+..++++.......++.++.-|+. +....|..+..
T Consensus 94 ~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~--------~~Rt~r~ell~ 139 (173)
T KOG4646|consen 94 FIREALGLPLIIFVLSSPPEITVHSAALFLQLLEF--------GERTERDELLS 139 (173)
T ss_pred HHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcC--------cccchhHHhcc
Confidence 99999999999999999999999999999999995 44566666553
No 25
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=99.19 E-value=8.5e-10 Score=95.91 Aligned_cols=198 Identities=22% Similarity=0.318 Sum_probs=162.6
Q ss_pred hhhHHhHhhccccccHHHHHHhCCHHHHHHHhcCCCCH-HHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCC
Q 025930 7 NTISVKSEDIRAQSNQEKIVEAGGLTSLLMLLGSSEDE-TIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAED 85 (246)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~i~~~g~i~~Li~ll~~~~~~-~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~ 85 (246)
++..|-.+++ ...++.|...|+++.|+.++.+++-+ .++..|++.|-.+...+ |++.++..| ...++++.+..+.
T Consensus 160 aa~aV~~evA--q~LCD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~ae-N~d~va~~~-~~~Il~lAK~~e~ 235 (832)
T KOG3678|consen 160 AAAAVGREVA--QGLCDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVAE-NRDRVARIG-LGVILNLAKEREP 235 (832)
T ss_pred chhhhhHHHH--HhhhhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhh-hhhHHhhcc-chhhhhhhhhcCc
Confidence 4455555553 45789999999999999999997433 25777888888876554 888888776 6677777766566
Q ss_pred hHHHHHHHHHHHHhh-CCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCC
Q 025930 86 PQTLRMVAGAIANLC-GNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGA 164 (246)
Q Consensus 86 ~~~~~~a~~aL~~L~-~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~ 164 (246)
++.....++.|.++. ++++..+.++..|+++.++--.+..++.+...++-+|.|+..+ +.-+++..|++..+
T Consensus 236 ~e~aR~~~~il~~mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~-------~~~a~qrrmveKr~ 308 (832)
T KOG3678|consen 236 VELARSVAGILEHMFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALH-------GGQAVQRRMVEKRA 308 (832)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhh-------chhHHHHHHHHhhh
Confidence 788889999999998 7788889999999999999888888899999999999998875 56788999999999
Q ss_pred hHHHHHcccCCChhHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhc
Q 025930 165 LPWIVQNSNNEASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRD 215 (246)
Q Consensus 165 i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~ 215 (246)
.++|..+....|+-+|.+||.+.+-|+.+.+....+..+|.+...--++.+
T Consensus 309 ~EWLF~LA~skDel~R~~AClAV~vlat~KE~E~~VrkS~TlaLVEPlva~ 359 (832)
T KOG3678|consen 309 AEWLFPLAFSKDELLRLHACLAVAVLATNKEVEREVRKSGTLALVEPLVAS 359 (832)
T ss_pred hhhhhhhhcchHHHHHHHHHHHHhhhhhhhhhhHHHhhccchhhhhhhhhc
Confidence 999999999899999999999999999988887777777776655555544
No 26
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.14 E-value=6e-09 Score=94.82 Aligned_cols=212 Identities=14% Similarity=0.111 Sum_probs=160.6
Q ss_pred HHhHhhcccccc-HHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHH
Q 025930 10 SVKSEDIRAQSN-QEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQT 88 (246)
Q Consensus 10 ~~~~~~~~~~~~-~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~ 88 (246)
+.+.++..+.+. .+.+.+.+.++.++..++++ |..+...|+.+|.+++.++.....+...++++.|..++.. .+..+
T Consensus 99 ~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~-d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~-~~~~v 176 (503)
T PF10508_consen 99 KQLGRIARHSEGAAQLLVDNELLPLIIQCLRDP-DLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQ-SSDIV 176 (503)
T ss_pred HHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCC-cHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhc-cCHHH
Confidence 335555444443 55667889999999999986 7888999999999999998888888888889999999987 46677
Q ss_pred HHHHHHHHHHhh-CCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHH
Q 025930 89 LRMVAGAIANLC-GNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPW 167 (246)
Q Consensus 89 ~~~a~~aL~~L~-~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~ 167 (246)
+-.++.++.+++ .+++....+.+.|.++.++..+.++|.-++.+++.++..|+. ++++.+.+.+.|+++.
T Consensus 177 R~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~---------~~~g~~yL~~~gi~~~ 247 (503)
T PF10508_consen 177 RCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE---------TPHGLQYLEQQGIFDK 247 (503)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc---------ChhHHHHHHhCCHHHH
Confidence 888999999998 678888889999999999999999888899999999999994 4699999999999999
Q ss_pred HHHcccCC--Ch---hHHHH-HHHHHHHhccC-chhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccChh
Q 025930 168 IVQNSNNE--AS---PIRRH-IELALCHLAQH-EVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSSPA 234 (246)
Q Consensus 168 Lv~ll~~~--~~---~v~~~-a~~aL~~La~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~~ 234 (246)
|+.++... +| .+... .....++++.. +..... .-...+..+.+++. +.+...+..|.++++.+.+
T Consensus 248 L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~-~~p~~~~~l~~~~~-s~d~~~~~~A~dtlg~igs 319 (503)
T PF10508_consen 248 LSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLE-LYPAFLERLFSMLE-SQDPTIREVAFDTLGQIGS 319 (503)
T ss_pred HHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHH-HHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHhC
Confidence 99999665 33 11212 23566677663 322111 11223334444444 5667778888888875443
No 27
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.11 E-value=1.4e-09 Score=93.31 Aligned_cols=200 Identities=13% Similarity=0.127 Sum_probs=136.8
Q ss_pred HHHHHHhCC---HHHHHHHhcCC-CCHHHHHHHHHHHHHhcCC-cchHHHHHhc------CcHHHHHHHHhcCCChHHHH
Q 025930 22 QEKIVEAGG---LTSLLMLLGSS-EDETIHRVAAGAIANLAMN-ETNQELIMTQ------GGIGLLSTTAANAEDPQTLR 90 (246)
Q Consensus 22 ~~~i~~~g~---i~~Li~ll~~~-~~~~~~~~a~~~L~~la~~-~~~~~~i~~~------g~i~~L~~ll~~~~~~~~~~ 90 (246)
|..+++..+ ...++.+|+.- .++++.......+..+..+ +...+.+.+. .-..+++.++.+ +|..+..
T Consensus 45 ~~~~~~~~~~~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~-~D~~i~~ 123 (312)
T PF03224_consen 45 RRELLEEDGDQYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDR-NDSFIQL 123 (312)
T ss_dssp -----------------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S--SSHHHHH
T ss_pred HHHHHHhchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcC-CCHHHHH
Confidence 444555433 66777777765 6778888889999998655 4455555442 135677777776 5889999
Q ss_pred HHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhcC----CCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChH
Q 025930 91 MVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRC----GHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALP 166 (246)
Q Consensus 91 ~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~~----~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~ 166 (246)
.++..|..+......+..-...+.++.++..+++ ++.+.+..++.+|.+|. ..++.|..+.+.|+++
T Consensus 124 ~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL---------~~~~~R~~f~~~~~v~ 194 (312)
T PF03224_consen 124 KAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLL---------RSKEYRQVFWKSNGVS 194 (312)
T ss_dssp HHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHH---------TSHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHh---------CcchhHHHHHhcCcHH
Confidence 9999999998443332222224556777777764 45567789999999998 4579999999999999
Q ss_pred HHHHcc------c-CCChhHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 025930 167 WIVQNS------N-NEASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTS 231 (246)
Q Consensus 167 ~Lv~ll------~-~~~~~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~ 231 (246)
.+..++ . ..+.+++++++.++|.|+++++..+.+.+.+.++.|+++++....+.+-+.+..+++|
T Consensus 195 ~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~N 266 (312)
T PF03224_consen 195 PLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRN 266 (312)
T ss_dssp HHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 999999 2 2367899999999999999999999999999999999999998888888999888876
No 28
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=3e-08 Score=83.94 Aligned_cols=177 Identities=17% Similarity=0.165 Sum_probs=144.3
Q ss_pred CHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh-CCchhHHHHHhcCCHHHHHHH
Q 025930 43 DETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC-GNDKLQLKLRGEGGIKALLGM 121 (246)
Q Consensus 43 ~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~-~~~~~~~~l~~~g~i~~L~~l 121 (246)
+..-+..|..-|..+..+-+|...+...||...++..+.+ .+..+++.|++.|...+ +||..+..+++.|+.+.|+..
T Consensus 96 ~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~-~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ 174 (342)
T KOG2160|consen 96 DLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLEN-SDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI 174 (342)
T ss_pred CHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcC-CcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence 5556777888888889998899999999999999997777 68999999999999988 789999999999999999999
Q ss_pred hcCC-CHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccC--CChhHHHHHHHHHHHhcc-CchhH
Q 025930 122 VRCG-HPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNN--EASPIRRHIELALCHLAQ-HEVNA 197 (246)
Q Consensus 122 l~~~-~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~--~~~~v~~~a~~aL~~La~-~~~~~ 197 (246)
+.+. +.+.+.+|..++++|-. ..+.+...+...++...|...+.+ .+...+..++..+..|.. +...+
T Consensus 175 ls~~~~~~~r~kaL~AissLIR--------n~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~ 246 (342)
T KOG2160|consen 175 LSSDDPNTVRTKALFAISSLIR--------NNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDE 246 (342)
T ss_pred HccCCCchHHHHHHHHHHHHHh--------cCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhh
Confidence 9854 56678999999999984 557888888888889999999988 467788888999999976 55555
Q ss_pred HHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 025930 198 KDMISGGALWELVRISRDCSREDIRTLAHRTL 229 (246)
Q Consensus 198 ~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L 229 (246)
..+...|....+..+... .+....+.+..++
T Consensus 247 d~~~~~~f~~~~~~l~~~-l~~~~~e~~l~~~ 277 (342)
T KOG2160|consen 247 DIASSLGFQRVLENLISS-LDFEVNEAALTAL 277 (342)
T ss_pred hHHHHhhhhHHHHHHhhc-cchhhhHHHHHHH
Confidence 555556777777777764 4444555555444
No 29
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=2.7e-09 Score=93.12 Aligned_cols=223 Identities=12% Similarity=0.119 Sum_probs=173.4
Q ss_pred hhhHHhHhhccccccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCCh
Q 025930 7 NTISVKSEDIRAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDP 86 (246)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~ 86 (246)
....++.|+|..-..-.+++..+++..|+..|+.+ +..+.......|-.|+.-.+|+..+.+.|.++.|+.++.. .++
T Consensus 282 va~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~-n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~-~h~ 359 (791)
T KOG1222|consen 282 VAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRS-NSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPI-QHP 359 (791)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHccc-chHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCC-CCH
Confidence 34567889988888888999999999999999986 6677777889999999999999999999999999999998 689
Q ss_pred HHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChH
Q 025930 87 QTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALP 166 (246)
Q Consensus 87 ~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~ 166 (246)
+++...+..++|++-+..++..++..|.+|.+..++.++.- ...|...+--++ .++..+..+....+++
T Consensus 360 dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S---------~dD~~K~MfayTdci~ 428 (791)
T KOG1222|consen 360 DLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLS---------CDDDAKAMFAYTDCIK 428 (791)
T ss_pred HHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCccc--chhhhhhhhhhc---------cCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987632 235666666777 4568888888888999
Q ss_pred HHHHcccC-CChhHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccChhHHHHHHHhhhc
Q 025930 167 WIVQNSNN-EASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSSPAFQAEMRRLRID 245 (246)
Q Consensus 167 ~Lv~ll~~-~~~~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~~~~~e~~~~~~~ 245 (246)
.+...+-. .+.++-......-.|||.+..+.+.+.+..++..|++......+.-. .+.+.+++...--.+++-++
T Consensus 429 ~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lL----mK~vRniSqHeg~tqn~Fid 504 (791)
T KOG1222|consen 429 LLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLL----MKVVRNISQHEGATQNMFID 504 (791)
T ss_pred HHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchHH----HHHHHHhhhccchHHHHHHH
Confidence 88775544 45666555544446889888888888888888887776654333322 44555555555445554444
Q ss_pred C
Q 025930 246 Y 246 (246)
Q Consensus 246 ~ 246 (246)
|
T Consensus 505 y 505 (791)
T KOG1222|consen 505 Y 505 (791)
T ss_pred H
Confidence 4
No 30
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=99.06 E-value=3.1e-09 Score=92.51 Aligned_cols=204 Identities=21% Similarity=0.229 Sum_probs=156.6
Q ss_pred hhhhHHhHhh-ccccccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC--cchHHHHHhcCcHHHHHHHHhc
Q 025930 6 LNTISVKSED-IRAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN--ETNQELIMTQGGIGLLSTTAAN 82 (246)
Q Consensus 6 ~~~~~~~~~~-~~~~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~--~~~~~~i~~~g~i~~L~~ll~~ 82 (246)
+--++++.++ -.+++.++.++++|+++.++-+++.. ||.+.++|+.+|+|++.+ ...++.+++...-++|+.+..+
T Consensus 240 R~~~~il~~mFKHSeet~~~Lvaa~~lD~vl~~~rRt-~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~s 318 (832)
T KOG3678|consen 240 RSVAGILEHMFKHSEETCQRLVAAGGLDAVLYWCRRT-DPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFS 318 (832)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHhhcccchheeecccC-CHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcc
Confidence 3445556655 56778899999999999999999996 899999999999999887 6789999999999999999888
Q ss_pred CCChHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhC
Q 025930 83 AEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDD 162 (246)
Q Consensus 83 ~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~ 162 (246)
. |+-++-.||-|.+-++++.+.-..+...|.+..+-.++.+.|+.-- ++--...+ .++. .
T Consensus 319 k-Del~R~~AClAV~vlat~KE~E~~VrkS~TlaLVEPlva~~DP~~F---ARD~hd~a------------QG~~----~ 378 (832)
T KOG3678|consen 319 K-DELLRLHACLAVAVLATNKEVEREVRKSGTLALVEPLVASLDPGRF---ARDAHDYA------------QGRG----P 378 (832)
T ss_pred h-HHHHHHHHHHHHhhhhhhhhhhHHHhhccchhhhhhhhhccCcchh---hhhhhhhh------------ccCC----h
Confidence 4 6777889999999999999998888888988877777777666521 11111112 1110 1
Q ss_pred CChHHHHHcccCCChhHHHHHHHHHHHhcc--Cchh-HHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 025930 163 GALPWIVQNSNNEASPIRRHIELALCHLAQ--HEVN-AKDMISGGALWELVRISRDCSREDIRTLAHRTLTS 231 (246)
Q Consensus 163 g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~--~~~~-~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~ 231 (246)
.-++.|+.+|.+...+.+..++..++.-+. ...+ .+.+.+-|+++.|.++.+ +.++...+.|.++|.-
T Consensus 379 d~LqRLvPlLdS~R~EAq~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaS-S~d~vaakfAseALtv 449 (832)
T KOG3678|consen 379 DDLQRLVPLLDSNRLEAQCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVAS-SPDEVAAKFASEALTV 449 (832)
T ss_pred HHHHHhhhhhhcchhhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHH
Confidence 247888999987777777777776665544 3333 466677899999999998 6667778888888864
No 31
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.05 E-value=3.1e-08 Score=87.28 Aligned_cols=219 Identities=14% Similarity=0.096 Sum_probs=159.4
Q ss_pred hHHhHhhccccccHHHHHHhCCHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChH
Q 025930 9 ISVKSEDIRAQSNQEKIVEAGGLTSLLMLLGSSE-DETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQ 87 (246)
Q Consensus 9 ~~~~~~~~~~~~~~~~i~~~g~i~~Li~ll~~~~-~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~ 87 (246)
+..+..+-..++.|..+.+.++++.|+..|+... +..++..++.+++-++.+++....+.+.+.++.++.+++...-++
T Consensus 165 v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEK 244 (429)
T cd00256 165 ARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEK 244 (429)
T ss_pred HHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHH
Confidence 4677788888999999999999999999998754 557888899999999999887788888899999999999867788
Q ss_pred HHHHHHHHHHHhhCCc-------hhHHHHHhcCCHHHHHHHhc---CCCHHHHHHHHHHHHHhhcc-cccccc-------
Q 025930 88 TLRMVAGAIANLCGND-------KLQLKLRGEGGIKALLGMVR---CGHPDVLAQVARGIANFAKC-ESRAST------- 149 (246)
Q Consensus 88 ~~~~a~~aL~~L~~~~-------~~~~~l~~~g~i~~L~~ll~---~~~~~~~~~a~~~L~nL~~~-~~~~~~------- 149 (246)
+.+.++.++.|+...+ .....+++.|..+ ++..|. -.|+++.+-.-..--.|... ....+.
T Consensus 245 vvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~-~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El 323 (429)
T cd00256 245 VIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLK-TLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSEL 323 (429)
T ss_pred HHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHH-HHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8889999999998532 2334566777655 555554 24677654322111111110 000000
Q ss_pred ---------cC-C----hhhhHHHHhCC--ChHHHHHccc-CCChhHHHHHHHHHHHhcc-CchhHHHHHhCCcHHHHHH
Q 025930 150 ---------QG-T----KTGRSLLIDDG--ALPWIVQNSN-NEASPIRRHIELALCHLAQ-HEVNAKDMISGGALWELVR 211 (246)
Q Consensus 150 ---------~~-~----~~~~~~l~~~g--~i~~Lv~ll~-~~~~~v~~~a~~aL~~La~-~~~~~~~i~~~g~i~~L~~ 211 (246)
++ + .++-..+.+++ .+..|+.++. ++|+.+-..||.=|+.++. +|.+|..+.+-|+=..+++
T Consensus 324 ~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~ 403 (429)
T cd00256 324 RSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMR 403 (429)
T ss_pred hcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHH
Confidence 11 1 34455566554 3778899994 5578888889999999987 7788888888999999999
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 025930 212 ISRDCSREDIRTLAHRTL 229 (246)
Q Consensus 212 ll~~~~~~~~~~~A~~~L 229 (246)
++. +++++++..|..++
T Consensus 404 Lm~-h~d~~Vr~eAL~av 420 (429)
T cd00256 404 LLN-HEDPNVRYEALLAV 420 (429)
T ss_pred Hhc-CCCHHHHHHHHHHH
Confidence 998 55677788777765
No 32
>PRK09687 putative lyase; Provisional
Probab=99.03 E-value=7e-09 Score=87.34 Aligned_cols=132 Identities=14% Similarity=0.140 Sum_probs=70.7
Q ss_pred CHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHHH
Q 025930 30 GLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKL 109 (246)
Q Consensus 30 ~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l 109 (246)
.++.+..++++. ++.++..|+.+|+.+...+.. ....++.|..++.+.+++.++..|+.+|.+++......
T Consensus 55 ~~~~l~~ll~~~-d~~vR~~A~~aLg~lg~~~~~-----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~--- 125 (280)
T PRK09687 55 VFRLAIELCSSK-NPIERDIGADILSQLGMAKRC-----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY--- 125 (280)
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHHHHhcCCCccc-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc---
Confidence 466667776664 677777788888877554322 11245666666554467788888888888875322110
Q ss_pred HhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHH
Q 025930 110 RGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCH 189 (246)
Q Consensus 110 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~ 189 (246)
....+..+...+.++++.++..++.+|..+.. ..+++.|+.++.++++.+|..|+.+|..
T Consensus 126 -~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-------------------~~ai~~L~~~L~d~~~~VR~~A~~aLg~ 185 (280)
T PRK09687 126 -SPKIVEQSQITAFDKSTNVRFAVAFALSVIND-------------------EAAIPLLINLLKDPNGDVRNWAAFALNS 185 (280)
T ss_pred -chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-------------------HHHHHHHHHHhcCCCHHHHHHHHHHHhc
Confidence 00012233334444444455555544443331 1245555555555555555555555555
Q ss_pred h
Q 025930 190 L 190 (246)
Q Consensus 190 L 190 (246)
+
T Consensus 186 ~ 186 (280)
T PRK09687 186 N 186 (280)
T ss_pred C
Confidence 4
No 33
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=99.03 E-value=7.6e-09 Score=75.89 Aligned_cols=150 Identities=16% Similarity=0.131 Sum_probs=124.0
Q ss_pred cHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccC
Q 025930 72 GIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQG 151 (246)
Q Consensus 72 ~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~ 151 (246)
-+..|+.-.....+.+.+++...-|.|++.+|-|..++.+.++++..++.+..+++.+++.+++.|||+| -
T Consensus 17 Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC---------~ 87 (173)
T KOG4646|consen 17 YLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLC---------L 87 (173)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhc---------c
Confidence 3556666566667899999999999999999999999999999999999999999999999999999999 4
Q ss_pred ChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhccCc-hhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHc
Q 025930 152 TKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQHE-VNAKDMISGGALWELVRISRDCSREDIRTLAHRTLT 230 (246)
Q Consensus 152 ~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~-~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~ 230 (246)
++.+.+-|.+.+++|.++..+.++...+-..++.++..|+... ..|..+..--.++.+.++-. +...+.+.+|...+.
T Consensus 88 d~~n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~-s~s~~~rnLa~~fl~ 166 (173)
T KOG4646|consen 88 DKTNAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRE-SKSHDERNLASAFLD 166 (173)
T ss_pred ChHHHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHH-HhhHHHHHHHHHHHH
Confidence 5788999999999999999999998889899999999999944 45677766555665555553 344456777777765
Q ss_pred c
Q 025930 231 S 231 (246)
Q Consensus 231 ~ 231 (246)
.
T Consensus 167 ~ 167 (173)
T KOG4646|consen 167 K 167 (173)
T ss_pred h
Confidence 3
No 34
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.99 E-value=1.2e-08 Score=87.48 Aligned_cols=197 Identities=15% Similarity=0.132 Sum_probs=144.1
Q ss_pred hhHHhHhhcccc-ccHHHHHH------hCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHH
Q 025930 8 TISVKSEDIRAQ-SNQEKIVE------AGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTA 80 (246)
Q Consensus 8 ~~~~~~~~~~~~-~~~~~i~~------~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll 80 (246)
.+.++.++...+ +..+.+.+ .....+++.++.++ |..++..|+..|..+....+.+..-...+.++.++..+
T Consensus 77 vL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~-D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L 155 (312)
T PF03224_consen 77 VLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRN-DSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWL 155 (312)
T ss_dssp HHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-S-SHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCC-CHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHH
Confidence 345556664444 34444444 13689999988886 88899999999999976644443332245677777777
Q ss_pred hcC---CChHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHh------c-CCCHHHHHHHHHHHHHhhccccccccc
Q 025930 81 ANA---EDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMV------R-CGHPDVLAQVARGIANFAKCESRASTQ 150 (246)
Q Consensus 81 ~~~---~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll------~-~~~~~~~~~a~~~L~nL~~~~~~~~~~ 150 (246)
++. ++.+.+..++.+|.+|...++.+..+.+.|+++.+..++ . ....+++.+++-+++.|+++
T Consensus 156 ~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~------- 228 (312)
T PF03224_consen 156 SSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFE------- 228 (312)
T ss_dssp H-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTS-------
T ss_pred HHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcC-------
Confidence 652 234566789999999999999999999999999999999 2 34577889999999999965
Q ss_pred CChhhhHHHHhCCChHHHHHcccCC-ChhHHHHHHHHHHHhccCch--hHHHHHhCCcHHHHHHHHh
Q 025930 151 GTKTGRSLLIDDGALPWIVQNSNNE-ASPIRRHIELALCHLAQHEV--NAKDMISGGALWELVRISR 214 (246)
Q Consensus 151 ~~~~~~~~l~~~g~i~~Lv~ll~~~-~~~v~~~a~~aL~~La~~~~--~~~~i~~~g~i~~L~~ll~ 214 (246)
++..+.+.+.+.+|.|+++++.. .+.+-+.++.+|.||..... ....|+.+|+.+.+-.+..
T Consensus 229 --~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~ 293 (312)
T PF03224_consen 229 --PEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSE 293 (312)
T ss_dssp --HHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHS
T ss_pred --HHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhc
Confidence 58889999999999999999766 67899999999999988554 7888888888887776664
No 35
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=98.93 E-value=3.1e-08 Score=85.50 Aligned_cols=219 Identities=13% Similarity=0.162 Sum_probs=148.0
Q ss_pred hHhhccccccHHHH----HHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcC---
Q 025930 12 KSEDIRAQSNQEKI----VEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANA--- 83 (246)
Q Consensus 12 ~~~~~~~~~~~~~i----~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~--- 83 (246)
++..+.++--|..+ +++|.+.+|.+...++ |..+...++++|+|++.+ +++|..+.+.||-.+++..++..
T Consensus 66 ~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~-d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~ 144 (604)
T KOG4500|consen 66 LADRSKNEVERSLFRNYCIDAEALELLRQTPSSP-DTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSK 144 (604)
T ss_pred HHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCC-cccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhcccccc
Confidence 34444444444443 5678889999998886 677788899999999887 78999999999977666666531
Q ss_pred CC---hHHHHHHHHHHHHhh-CCchhHHHHHhcCCHHHHHHHh-------------------------------------
Q 025930 84 ED---PQTLRMVAGAIANLC-GNDKLQLKLRGEGGIKALLGMV------------------------------------- 122 (246)
Q Consensus 84 ~~---~~~~~~a~~aL~~L~-~~~~~~~~l~~~g~i~~L~~ll------------------------------------- 122 (246)
++ ++....+++.|.|-. .+.+.+.++++.|+++.|...+
T Consensus 145 d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl 224 (604)
T KOG4500|consen 145 DNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSL 224 (604)
T ss_pred CCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchH
Confidence 22 355556777777776 5677788888888877443211
Q ss_pred --------c---CC--CH---HHH-------------------HHHHHHHHHhhcccccccc--------------cCCh
Q 025930 123 --------R---CG--HP---DVL-------------------AQVARGIANFAKCESRAST--------------QGTK 153 (246)
Q Consensus 123 --------~---~~--~~---~~~-------------------~~a~~~L~nL~~~~~~~~~--------------~~~~ 153 (246)
. .+ ++ ++. +.....+.++-...+.+.. ...+
T Consensus 225 ~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGD 304 (604)
T KOG4500|consen 225 VFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGD 304 (604)
T ss_pred HHHHHHHHHHhhccchhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCc
Confidence 1 11 11 111 1122222221110000000 0123
Q ss_pred hhhHHHHhCC-ChHHHHHcccCCChhHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhc----CCHHHHHHHHHHH
Q 025930 154 TGRSLLIDDG-ALPWIVQNSNNEASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRD----CSREDIRTLAHRT 228 (246)
Q Consensus 154 ~~~~~l~~~g-~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~----~~~~~~~~~A~~~ 228 (246)
+.-+.+...+ ++..++.-+.++|......+..+|+|++.+++++..+++.|.+..|+.++-. .++.+.+.++..+
T Consensus 305 eSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsA 384 (604)
T KOG4500|consen 305 ESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSA 384 (604)
T ss_pred hHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHH
Confidence 4444455444 7889999999999999999999999999999999999999999999999853 4566677788888
Q ss_pred Hcc
Q 025930 229 LTS 231 (246)
Q Consensus 229 L~~ 231 (246)
|.+
T Consensus 385 LRn 387 (604)
T KOG4500|consen 385 LRN 387 (604)
T ss_pred HHh
Confidence 875
No 36
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=6.5e-08 Score=89.33 Aligned_cols=176 Identities=13% Similarity=0.105 Sum_probs=144.1
Q ss_pred hCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhH
Q 025930 28 AGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQ 106 (246)
Q Consensus 28 ~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~ 106 (246)
.-.+|.|+.+|+...+.++...||++|.+|+.- ++.-..+|+.++||.|+.-|...+--.+-++++.||-.++..+.
T Consensus 210 ~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~-- 287 (1051)
T KOG0168|consen 210 KSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP-- 287 (1051)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc--
Confidence 445999999999998999999999999999877 88889999999999999877665667799999999999985432
Q ss_pred HHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHH
Q 025930 107 LKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELA 186 (246)
Q Consensus 107 ~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~a 186 (246)
..+.+.|++..++.++..-+...++.|+.+..|+|..- .+++..- +. .++|.|-.++...+.+.-+..+.+
T Consensus 288 ~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi------~sd~f~~-v~--ealPlL~~lLs~~D~k~ies~~ic 358 (1051)
T KOG0168|consen 288 KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSI------RSDEFHF-VM--EALPLLTPLLSYQDKKPIESVCIC 358 (1051)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CCccchH-HH--HHHHHHHHHHhhccchhHHHHHHH
Confidence 56789999999999998888889999999999999742 1223222 22 479999999999999999999999
Q ss_pred HHHhcc----CchhHHHHHhCCcHHHHHHHHh
Q 025930 187 LCHLAQ----HEVNAKDMISGGALWELVRISR 214 (246)
Q Consensus 187 L~~La~----~~~~~~~i~~~g~i~~L~~ll~ 214 (246)
++.++. .++.-+.+...|.+....+++.
T Consensus 359 ~~ri~d~f~h~~~kLdql~s~dLi~~~~qLls 390 (1051)
T KOG0168|consen 359 LTRIADGFQHGPDKLDQLCSHDLITNIQQLLS 390 (1051)
T ss_pred HHHHHHhcccChHHHHHHhchhHHHHHHHHHh
Confidence 999954 4455577777777777777765
No 37
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=98.84 E-value=1.6e-07 Score=81.26 Aligned_cols=203 Identities=14% Similarity=0.086 Sum_probs=153.2
Q ss_pred ccccHHHHHHhC-CHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhc----CCChHHHHHH
Q 025930 18 AQSNQEKIVEAG-GLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAAN----AEDPQTLRMV 92 (246)
Q Consensus 18 ~~~~~~~i~~~g-~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~----~~~~~~~~~a 92 (246)
.++.-+++-+.| .++.+++|+++. |...+..++-+++|++..+.+...+++.|.+..|+.++-. ..|.+.+-.+
T Consensus 303 GDeSMq~L~~~p~~l~~~~sw~~S~-d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~ 381 (604)
T KOG4500|consen 303 GDESMQKLHADPQFLDFLESWFRSD-DSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHAC 381 (604)
T ss_pred CchHHHHHhcCcHHHHHHHHHhcCC-chhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHH
Confidence 344445566666 799999999995 7777888899999999999999999999999999987754 1345667688
Q ss_pred HHHHHHhhCCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhC-CChHHHHHc
Q 025930 93 AGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDD-GALPWIVQN 171 (246)
Q Consensus 93 ~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~-g~i~~Lv~l 171 (246)
+.||+|+.-...|+.++...|+...++.+++...|.+...-.++++.+-- +.+..-..+.++ ..++.|++-
T Consensus 382 lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d--------~qe~~a~eL~kn~~l~ekLv~W 453 (604)
T KOG4500|consen 382 LSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRD--------SQEYIACELAKNPELFEKLVDW 453 (604)
T ss_pred HHHHHhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHh--------chHHHHHHHhcCHHHHHHHHHh
Confidence 99999999999999999999999999999999989999999999988771 112222333322 346777777
Q ss_pred ccCCCh-hHHHHHHHHHHHhccC---chhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHc
Q 025930 172 SNNEAS-PIRRHIELALCHLAQH---EVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLT 230 (246)
Q Consensus 172 l~~~~~-~v~~~a~~aL~~La~~---~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~ 230 (246)
.+++|- .+...+.+.+.-|-.+ .+....+-++|++..++.+... ++-..+.-|.-++.
T Consensus 454 sks~D~aGv~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~-~hi~mqnEalVal~ 515 (604)
T KOG4500|consen 454 SKSPDFAGVAGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFTK-NHINMQNEALVALL 515 (604)
T ss_pred hhCCccchhhhhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHHHHH-hhHHHhHHHHHHHH
Confidence 766654 5888888888888554 3445566689999999999873 44444444444443
No 38
>PRK09687 putative lyase; Provisional
Probab=98.81 E-value=6.3e-07 Score=75.55 Aligned_cols=172 Identities=14% Similarity=0.115 Sum_probs=117.5
Q ss_pred cccHHHHHHhCC----HHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHH
Q 025930 19 QSNQEKIVEAGG----LTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAG 94 (246)
Q Consensus 19 ~~~~~~i~~~g~----i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~ 94 (246)
.+++....-.|. ++.|+.+|.+. +..++..|+.+|..+.... .++.+..++.+ +|+.++..+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~L~~~L~d~-d~~vR~~A~~aL~~~~~~~----------~~~~l~~ll~~-~d~~vR~~A~~ 76 (280)
T PRK09687 9 KASKEYSLYSQCKKLNDDELFRLLDDH-NSLKRISSIRVLQLRGGQD----------VFRLAIELCSS-KNPIERDIGAD 76 (280)
T ss_pred hhhHHHHHHHHHhhccHHHHHHHHhCC-CHHHHHHHHHHHHhcCcch----------HHHHHHHHHhC-CCHHHHHHHHH
Confidence 445555554444 89999999886 8888999999999886543 56777787777 68999999999
Q ss_pred HHHHhhCCchhHHHHHhcCCHHHHHHH-hcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHccc
Q 025930 95 AIANLCGNDKLQLKLRGEGGIKALLGM-VRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSN 173 (246)
Q Consensus 95 aL~~L~~~~~~~~~l~~~g~i~~L~~l-l~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~ 173 (246)
+|..|-..... ....++.|..+ +.++++.++..++.+|++++... ... ...+++.+...+.
T Consensus 77 aLg~lg~~~~~-----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~--------~~~-----~~~a~~~l~~~~~ 138 (280)
T PRK09687 77 ILSQLGMAKRC-----QDNVFNILNNLALEDKSACVRASAINATGHRCKKN--------PLY-----SPKIVEQSQITAF 138 (280)
T ss_pred HHHhcCCCccc-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccc--------ccc-----chHHHHHHHHHhh
Confidence 99998643322 12346777776 56788999999999999987421 100 0124566777788
Q ss_pred CCChhHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 025930 174 NEASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTS 231 (246)
Q Consensus 174 ~~~~~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~ 231 (246)
++++.||..++.+|..+.. + .+++.|+.++.+ ++.++|..|..+|..
T Consensus 139 D~~~~VR~~a~~aLg~~~~-~---------~ai~~L~~~L~d-~~~~VR~~A~~aLg~ 185 (280)
T PRK09687 139 DKSTNVRFAVAFALSVIND-E---------AAIPLLINLLKD-PNGDVRNWAAFALNS 185 (280)
T ss_pred CCCHHHHHHHHHHHhccCC-H---------HHHHHHHHHhcC-CCHHHHHHHHHHHhc
Confidence 8899999999999986642 1 144455555542 222345555555543
No 39
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=5e-07 Score=83.61 Aligned_cols=183 Identities=15% Similarity=0.132 Sum_probs=144.7
Q ss_pred CHHHHHHHhcCCCCHHHHHHHHHHHHHh-cCC-cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh-CCchhH
Q 025930 30 GLTSLLMLLGSSEDETIHRVAAGAIANL-AMN-ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC-GNDKLQ 106 (246)
Q Consensus 30 ~i~~Li~ll~~~~~~~~~~~a~~~L~~l-a~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~-~~~~~~ 106 (246)
-+++|++-|+...|+..|..|+.-|+.+ .+. ++.-..|--.-.+|.|+.+++.+.+.++.-.||+||.+|| .-|...
T Consensus 168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~ 247 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS 247 (1051)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence 3788898888876888888888777755 444 4343444444678999999998888999999999999999 568888
Q ss_pred HHHHhcCCHHHHHHHhc-CCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHH
Q 025930 107 LKLRGEGGIKALLGMVR-CGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIEL 185 (246)
Q Consensus 107 ~~l~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~ 185 (246)
..++++++||.|+.-|. =.-.++.++++.+|-.++. .--.++.+.|++-..+..+.-=...+|..|+.
T Consensus 248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR-----------~H~~AiL~AG~l~a~LsylDFFSi~aQR~Ala 316 (1051)
T KOG0168|consen 248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISR-----------RHPKAILQAGALSAVLSYLDFFSIHAQRVALA 316 (1051)
T ss_pred heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHh-----------hccHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999988776 4668899999999999994 44456778999999998887668889999999
Q ss_pred HHHHhcc--CchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHH
Q 025930 186 ALCHLAQ--HEVNAKDMISGGALWELVRISRDCSREDIRTLA 225 (246)
Q Consensus 186 aL~~La~--~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A 225 (246)
+-.|+|. .++.-.-+.+ ++|.|..+++..+.+-+...+
T Consensus 317 iaaN~Cksi~sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ 356 (1051)
T KOG0168|consen 317 IAANCCKSIRSDEFHFVME--ALPLLTPLLSYQDKKPIESVC 356 (1051)
T ss_pred HHHHHHhcCCCccchHHHH--HHHHHHHHHhhccchhHHHHH
Confidence 9999987 4444344555 899999999876665554433
No 40
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.66 E-value=6.2e-07 Score=80.98 Aligned_cols=164 Identities=15% Similarity=0.096 Sum_probs=124.4
Q ss_pred ccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHH
Q 025930 20 SNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIAN 98 (246)
Q Consensus 20 ~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~ 98 (246)
.+|+.+.+.-....+....... |......|+..+-+++.. ...+..+....+..++++++.. ++..+...++++|.|
T Consensus 368 ~~~k~~l~~~t~~~l~~~~~~k-d~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~d-p~~~i~~~~lgai~N 445 (678)
T KOG1293|consen 368 SLKKEILETTTESHLMCLPPIK-DHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMD-PEIMIMGITLGAICN 445 (678)
T ss_pred hHHHHHHHHHHHHHHccccccc-cHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhC-cchhHHHHHHHHHHH
Confidence 3444444444444444333333 566667777777777765 4455556677888999999976 567788899999999
Q ss_pred hh-CCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhh-HHHHhCCChHHHHHcccCCC
Q 025930 99 LC-GNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGR-SLLIDDGALPWIVQNSNNEA 176 (246)
Q Consensus 99 L~-~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~-~~l~~~g~i~~Lv~ll~~~~ 176 (246)
+. .....+..+...|+|+.+..++.++++.++.++.++|+++.+. +++.. ......=....++.+..+++
T Consensus 446 lVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~--------~de~~k~~~~~ki~a~~i~~l~nd~d 517 (678)
T KOG1293|consen 446 LVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFN--------CDEEEKFQLLAKIPANLILDLINDPD 517 (678)
T ss_pred HHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhc--------chHHHHHHHHHHhhHHHHHHHHhCCC
Confidence 98 6788899999999999999999999999999999999999974 23433 33333333557788889999
Q ss_pred hhHHHHHHHHHHHhccC
Q 025930 177 SPIRRHIELALCHLAQH 193 (246)
Q Consensus 177 ~~v~~~a~~aL~~La~~ 193 (246)
..|++.+...|.||..+
T Consensus 518 ~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 518 WAVQEQCFQLLRNLTCN 534 (678)
T ss_pred HHHHHHHHHHHHHhhcC
Confidence 99999999999999775
No 41
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.66 E-value=3.4e-06 Score=74.56 Aligned_cols=196 Identities=11% Similarity=0.075 Sum_probs=145.9
Q ss_pred CCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchH-HHHHhc-----CcHHHHHHHHhcCCChHHHHHHHHHHHHhhC-
Q 025930 29 GGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQ-ELIMTQ-----GGIGLLSTTAANAEDPQTLRMVAGAIANLCG- 101 (246)
Q Consensus 29 g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~-~~i~~~-----g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~- 101 (246)
.++..++.+++....+++.......+..+..+++.+ ..+.+. +....++.++.. +|.-+...++..|..+..
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~-~d~~i~~~a~~iLt~l~~~ 131 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNR-QDQFIVHMSFSILAKLACF 131 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcC-CchhHHHHHHHHHHHHHhc
Confidence 568899999998777777888788888886664444 445553 335577778876 567788889999988862
Q ss_pred CchhHHHHHhcCCHHHHHHHhcCC-CHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCC--Chh
Q 025930 102 NDKLQLKLRGEGGIKALLGMVRCG-HPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNE--ASP 178 (246)
Q Consensus 102 ~~~~~~~l~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~--~~~ 178 (246)
.+.+.......-...-+...++++ +.+.+..++..+.+|. ..+++|..+.+.++++.|+.++... +.+
T Consensus 132 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL---------~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Q 202 (429)
T cd00256 132 GLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLL---------RVDEYRFAFVLADGVPTLVKLLSNATLGFQ 202 (429)
T ss_pred CccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHh---------CCchHHHHHHHccCHHHHHHHHhhccccHH
Confidence 222111100001223445555543 4677888889999988 4469999999999999999999764 568
Q ss_pred HHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccChh
Q 025930 179 IRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSSPA 234 (246)
Q Consensus 179 v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~~ 234 (246)
++++++.++|-|+++++....+.+.+.++.|+++++.+..+.+-+.+..++.|.-+
T Consensus 203 l~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~ 258 (429)
T cd00256 203 LQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLIS 258 (429)
T ss_pred HHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence 99999999999999988878888899999999999998888888888888876433
No 42
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.57 E-value=9e-08 Score=56.43 Aligned_cols=40 Identities=45% Similarity=0.630 Sum_probs=37.1
Q ss_pred ccccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 025930 18 AQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLA 58 (246)
Q Consensus 18 ~~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la 58 (246)
++++++.+++.|++|+|+++|+++ ++.+++.|+++|+||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~-~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSP-DPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSS-SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCC-CHHHHHHHHHHHHHHh
Confidence 468899999999999999999975 8999999999999997
No 43
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.55 E-value=7.6e-06 Score=70.75 Aligned_cols=220 Identities=12% Similarity=0.076 Sum_probs=158.2
Q ss_pred hhHHhHhhccccccHHHHHHhCCHHHHHHHh-cCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCCh
Q 025930 8 TISVKSEDIRAQSNQEKIVEAGGLTSLLMLL-GSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDP 86 (246)
Q Consensus 8 ~~~~~~~~~~~~~~~~~i~~~g~i~~Li~ll-~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~ 86 (246)
+++-+.-+...+++|..++.++|+..++..+ ++..+-.+|-+.+.+++-|+.++...+.+...+.++.|.+++++..-+
T Consensus 177 ~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KE 256 (442)
T KOG2759|consen 177 AARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKE 256 (442)
T ss_pred HHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 4456666778889999999999999999999 444466788889999999999998888888888999999999986678
Q ss_pred HHHHHHHHHHHHhhCCc-------hhHHHHHhcCCHHHHHHHhc---CCCHHHHHHHHHHHHHhhcc-cccccc------
Q 025930 87 QTLRMVAGAIANLCGND-------KLQLKLRGEGGIKALLGMVR---CGHPDVLAQVARGIANFAKC-ESRAST------ 149 (246)
Q Consensus 87 ~~~~~a~~aL~~L~~~~-------~~~~~l~~~g~i~~L~~ll~---~~~~~~~~~a~~~L~nL~~~-~~~~~~------ 149 (246)
++.+-.+.++.|+.... .....++..++.+ .++.|. -.|+++....-..-.-|-.. ....+.
T Consensus 257 KV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k-~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sE 335 (442)
T KOG2759|consen 257 KVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLK-TLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSE 335 (442)
T ss_pred HHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchH-HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 88889999999999544 3334556666554 555553 34666654332221111100 000000
Q ss_pred ------cCC---------hhhhHHHHhCC--ChHHHHHcccCC-ChhHHHHHHHHHHHhcc-CchhHHHHHhCCcHHHHH
Q 025930 150 ------QGT---------KTGRSLLIDDG--ALPWIVQNSNNE-ASPIRRHIELALCHLAQ-HEVNAKDMISGGALWELV 210 (246)
Q Consensus 150 ------~~~---------~~~~~~l~~~g--~i~~Lv~ll~~~-~~~v~~~a~~aL~~La~-~~~~~~~i~~~g~i~~L~ 210 (246)
.++ .++...+.+++ .+..|+.+|... +|.+-.-||.=|+.... +|+++..+.+.||-..++
T Consensus 336 l~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM 415 (442)
T KOG2759|consen 336 LRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVM 415 (442)
T ss_pred HHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHH
Confidence 011 34555566554 478899999776 58888888888888876 999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 025930 211 RISRDCSREDIRTLAHRTL 229 (246)
Q Consensus 211 ~ll~~~~~~~~~~~A~~~L 229 (246)
+++. .++++++..|..+.
T Consensus 416 ~Lln-h~d~~Vry~ALlav 433 (442)
T KOG2759|consen 416 NLLN-HEDPEVRYHALLAV 433 (442)
T ss_pred HHhc-CCCchHHHHHHHHH
Confidence 9998 55566777776554
No 44
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.45 E-value=1.4e-05 Score=77.93 Aligned_cols=175 Identities=15% Similarity=0.113 Sum_probs=102.1
Q ss_pred HhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhH
Q 025930 27 EAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQ 106 (246)
Q Consensus 27 ~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~ 106 (246)
+.+.++.|+..|.++ ++.+++.|+.+|+.+... +.++.|...+++ +++.++..|+.+|..+....
T Consensus 619 ~~~~~~~L~~~L~D~-d~~VR~~Av~~L~~~~~~----------~~~~~L~~aL~D-~d~~VR~~Aa~aL~~l~~~~--- 683 (897)
T PRK13800 619 DAPSVAELAPYLADP-DPGVRRTAVAVLTETTPP----------GFGPALVAALGD-GAAAVRRAAAEGLRELVEVL--- 683 (897)
T ss_pred cchhHHHHHHHhcCC-CHHHHHHHHHHHhhhcch----------hHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhcc---
Confidence 456688999999875 899999999999987532 357888888876 67889888888887764211
Q ss_pred HHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccc----cCChhhh----HHHHhCCChHHHHHcccCCChh
Q 025930 107 LKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRAST----QGTKTGR----SLLIDDGALPWIVQNSNNEASP 178 (246)
Q Consensus 107 ~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~----~~~~~~~----~~l~~~g~i~~Lv~ll~~~~~~ 178 (246)
...+.|...|.++++.++..++.+|..+...+..... ..++..| ..+...+..+.|..++.++++.
T Consensus 684 ------~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~ 757 (897)
T PRK13800 684 ------PPAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATDENRE 757 (897)
T ss_pred ------CchHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHH
Confidence 1124555666666666766666666554310000000 0111111 1122223345566677777778
Q ss_pred HHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 025930 179 IRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTS 231 (246)
Q Consensus 179 v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~ 231 (246)
+|..++.+|..+..... ..++.|..+++++ +..+|..|..+|..
T Consensus 758 VR~~aa~aL~~~~~~~~--------~~~~~L~~ll~D~-d~~VR~aA~~aLg~ 801 (897)
T PRK13800 758 VRIAVAKGLATLGAGGA--------PAGDAVRALTGDP-DPLVRAAALAALAE 801 (897)
T ss_pred HHHHHHHHHHHhccccc--------hhHHHHHHHhcCC-CHHHHHHHHHHHHh
Confidence 88877777776644211 1234445555432 24455555555543
No 45
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.45 E-value=1.2e-05 Score=78.37 Aligned_cols=169 Identities=21% Similarity=0.193 Sum_probs=93.6
Q ss_pred CCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHH
Q 025930 29 GGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLK 108 (246)
Q Consensus 29 g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~ 108 (246)
+....|+..|++. |+.++..|+.+|+.+.. .+.|..++.+ +++.++..++.+|..+.....
T Consensus 714 ~~~~~l~~~L~D~-d~~VR~~Av~aL~~~~~-------------~~~l~~~l~D-~~~~VR~~aa~aL~~~~~~~~---- 774 (897)
T PRK13800 714 GDAALFAAALGDP-DHRVRIEAVRALVSVDD-------------VESVAGAATD-ENREVRIAVAKGLATLGAGGA---- 774 (897)
T ss_pred CCHHHHHHHhcCC-CHHHHHHHHHHHhcccC-------------cHHHHHHhcC-CCHHHHHHHHHHHHHhccccc----
Confidence 4567888899885 88889999999887521 1233444444 455666666666655542211
Q ss_pred HHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhccccc-ccc-----cCChhhhHHHH-------hCCChHHHHHcccCC
Q 025930 109 LRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESR-AST-----QGTKTGRSLLI-------DDGALPWIVQNSNNE 175 (246)
Q Consensus 109 l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~-~~~-----~~~~~~~~~l~-------~~g~i~~Lv~ll~~~ 175 (246)
..++.|..+++++++.++..|+.+|.++...+.. ... ..+...|.... ....++.|+.++.++
T Consensus 775 ----~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~~a~~~L~~~L~D~ 850 (897)
T PRK13800 775 ----PAGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAADVAVPALVEALTDP 850 (897)
T ss_pred ----hhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccccchHHHHHHHhcCC
Confidence 1244555555555555555555555554321000 000 00111111110 123467777777777
Q ss_pred ChhHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHc
Q 025930 176 ASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLT 230 (246)
Q Consensus 176 ~~~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~ 230 (246)
+..||..|+.+|..+..++. ..+.|...+. +++..++..|.++|.
T Consensus 851 ~~~VR~~A~~aL~~~~~~~~---------a~~~L~~al~-D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 851 HLDVRKAAVLALTRWPGDPA---------ARDALTTALT-DSDADVRAYARRALA 895 (897)
T ss_pred CHHHHHHHHHHHhccCCCHH---------HHHHHHHHHh-CCCHHHHHHHHHHHh
Confidence 78888888888777632222 3456666666 456667777777764
No 46
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.44 E-value=3.6e-07 Score=53.82 Aligned_cols=40 Identities=20% Similarity=0.356 Sum_probs=37.9
Q ss_pred hhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhcc
Q 025930 153 KTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQ 192 (246)
Q Consensus 153 ~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~ 192 (246)
++.++.+++.|++|.|+++++++++++++.|+++|+||+.
T Consensus 2 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 6889999999999999999999999999999999999973
No 47
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.44 E-value=4.5e-06 Score=75.60 Aligned_cols=116 Identities=18% Similarity=0.195 Sum_probs=95.4
Q ss_pred HHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCC-
Q 025930 25 IVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGN- 102 (246)
Q Consensus 25 i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~- 102 (246)
+-...++++||+++..+ +..++..+.++|.|+..+ .+.|..+.+.|||..+..++.+ .|+.++..+.|+|+++.-+
T Consensus 415 ~~~~dv~~plvqll~dp-~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~-~~~n~r~~~~~~Lr~l~f~~ 492 (678)
T KOG1293|consen 415 LKRNDVAQPLVQLLMDP-EIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTD-PDFNSRANSLWVLRHLMFNC 492 (678)
T ss_pred CccchhHHHHHHHhhCc-chhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcC-CCchHHHHHHHHHHHHHhcc
Confidence 33467799999999765 667788899999999887 7789999999999999999998 6789999999999999944
Q ss_pred -chhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 025930 103 -DKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAK 142 (246)
Q Consensus 103 -~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~ 142 (246)
++.+......=...-++.+...+++.+++.+...|+||..
T Consensus 493 de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c 533 (678)
T KOG1293|consen 493 DEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTC 533 (678)
T ss_pred hHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhc
Confidence 3334444443345667778889999999999999999974
No 48
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.35 E-value=3.6e-05 Score=73.79 Aligned_cols=186 Identities=15% Similarity=0.164 Sum_probs=131.0
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcCCc--chHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCC--chhH
Q 025930 31 LTSLLMLLGSSEDETIHRVAAGAIANLAMNE--TNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGN--DKLQ 106 (246)
Q Consensus 31 i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~--~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~--~~~~ 106 (246)
++.+-.++++. ++..++.+..+|+.++.+- .-+..+- ..++.+++.+.+ +++.++-.|+.|+.-++.+ ++.+
T Consensus 350 ~~~l~~~l~S~-~w~~R~AaL~Als~i~EGc~~~m~~~l~--~Il~~Vl~~l~D-phprVr~AA~naigQ~stdl~p~iq 425 (1075)
T KOG2171|consen 350 FEALEAMLQST-EWKERHAALLALSVIAEGCSDVMIGNLP--KILPIVLNGLND-PHPRVRYAALNAIGQMSTDLQPEIQ 425 (1075)
T ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHHcccHHHHHHHHH--HHHHHHHhhcCC-CCHHHHHHHHHHHHhhhhhhcHHHH
Confidence 55566677775 8887888888999888773 1222221 245566677777 7899999999999999943 5665
Q ss_pred HHHHhcCCHHHHHHHhcC-CCHHHHHHHHHHHHHhhcccccccccCChhhhHHHH-h--CCChH-HHHHcccCCChhHHH
Q 025930 107 LKLRGEGGIKALLGMVRC-GHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLI-D--DGALP-WIVQNSNNEASPIRR 181 (246)
Q Consensus 107 ~~l~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~-~--~g~i~-~Lv~ll~~~~~~v~~ 181 (246)
++..+ -..+.|+..+.+ +++.++..|+.++.|++.. +-..++ . .+.+. .+..++.++.+.+++
T Consensus 426 k~~~e-~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~-----------~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e 493 (1075)
T KOG2171|consen 426 KKHHE-RLPPALIALLDSTQNVRVQAHAAAALVNFSEE-----------CDKSILEPYLDGLMEKKLLLLLQSSKPYVQE 493 (1075)
T ss_pred HHHHH-hccHHHHHHhcccCchHHHHHHHHHHHHHHHh-----------CcHHHHHHHHHHHHHHHHHHHhcCCchhHHH
Confidence 55544 467788888875 4678999999999998851 111111 1 12233 334466778999999
Q ss_pred HHHHHHHHhccCchhHHHHHh--CCcHHHHHHHHhcCCHHHHHHHHHHHHccChh
Q 025930 182 HIELALCHLAQHEVNAKDMIS--GGALWELVRISRDCSREDIRTLAHRTLTSSPA 234 (246)
Q Consensus 182 ~a~~aL~~La~~~~~~~~i~~--~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~~ 234 (246)
.++.+|...|...+ +.++. ...+|.|.++++..+.++.|.+..+++-++.-
T Consensus 494 ~vvtaIasvA~AA~--~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisl 546 (1075)
T KOG2171|consen 494 QAVTAIASVADAAQ--EKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSL 546 (1075)
T ss_pred HHHHHHHHHHHHHh--hhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHH
Confidence 99999999987433 34443 46889999999988888888888887765433
No 49
>PF05536 Neurochondrin: Neurochondrin
Probab=98.23 E-value=5.3e-05 Score=69.62 Aligned_cols=153 Identities=17% Similarity=0.212 Sum_probs=116.7
Q ss_pred CHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCc----chHHHHHhcCcHHHHHHHHhcCC------ChHHHHHHHHHHHHh
Q 025930 30 GLTSLLMLLGSSEDETIHRVAAGAIANLAMNE----TNQELIMTQGGIGLLSTTAANAE------DPQTLRMVAGAIANL 99 (246)
Q Consensus 30 ~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~----~~~~~i~~~g~i~~L~~ll~~~~------~~~~~~~a~~aL~~L 99 (246)
.++..+.+|++.+ ++-+-.+...+.++..+. ..++.+.+.=|.+.+--+++++. ....+.-|+..|..+
T Consensus 6 ~l~~c~~lL~~~~-D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f 84 (543)
T PF05536_consen 6 SLEKCLSLLKSAD-DTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF 84 (543)
T ss_pred HHHHHHHHhccCC-cHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 3677899999975 332444666666776653 23456777777777778887632 244577889999999
Q ss_pred hCCchhHHHHHhcCCHHHHHHHhcCCCH-HHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChh
Q 025930 100 CGNDKLQLKLRGEGGIKALLGMVRCGHP-DVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASP 178 (246)
Q Consensus 100 ~~~~~~~~~l~~~g~i~~L~~ll~~~~~-~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~ 178 (246)
|.+++....=---+-||.|++.+.+.+. ++...|..+|..++.+ +++++.+.+.|+++.|++.+.+ ++.
T Consensus 85 ~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~---------~~G~~aLl~~g~v~~L~ei~~~-~~~ 154 (543)
T PF05536_consen 85 CRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASS---------PEGAKALLESGAVPALCEIIPN-QSF 154 (543)
T ss_pred cCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcC---------cHhHHHHHhcCCHHHHHHHHHh-Ccc
Confidence 9988776332222459999999987766 8999999999999954 6999999999999999999976 777
Q ss_pred HHHHHHHHHHHhccC
Q 025930 179 IRRHIELALCHLAQH 193 (246)
Q Consensus 179 v~~~a~~aL~~La~~ 193 (246)
..+.|+.++.++...
T Consensus 155 ~~E~Al~lL~~Lls~ 169 (543)
T PF05536_consen 155 QMEIALNLLLNLLSR 169 (543)
T ss_pred hHHHHHHHHHHHHHh
Confidence 889999999998663
No 50
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=8.6e-05 Score=68.83 Aligned_cols=176 Identities=15% Similarity=0.155 Sum_probs=139.2
Q ss_pred CHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHh-cCCChHHHHHHHHHHHHhhCCch----
Q 025930 30 GLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAA-NAEDPQTLRMVAGAIANLCGNDK---- 104 (246)
Q Consensus 30 ~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~-~~~~~~~~~~a~~aL~~L~~~~~---- 104 (246)
.|++|++...+++-..-++.|+..|-.++.. .|..+. ..|++.|++.+. ++.|+++...++..+.++..+++
T Consensus 23 TI~kLcDRvessTL~eDRR~A~rgLKa~srk--YR~~Vg-a~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v 99 (970)
T KOG0946|consen 23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSRK--YREEVG-AQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEV 99 (970)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHHH--HHHHHH-HcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhh
Confidence 4899999999988788899999998888754 344444 457788887765 67789999999999999984432
Q ss_pred --h-----------HHHHH-hcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhC-CChHHHH
Q 025930 105 --L-----------QLKLR-GEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDD-GALPWIV 169 (246)
Q Consensus 105 --~-----------~~~l~-~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~-g~i~~Lv 169 (246)
+ .+.++ ..+-|..++..+...|..++..++..+.++-.+ ...+.++.+... -+|..|+
T Consensus 100 ~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~-------r~~e~q~~ll~~P~gIS~lm 172 (970)
T KOG0946|consen 100 MDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSC-------RPTELQDALLVSPMGISKLM 172 (970)
T ss_pred cccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhc-------CCHHHHHHHHHCchhHHHHH
Confidence 1 22333 567788999999999999999999999998765 557888887754 4799999
Q ss_pred HcccCCChhHHHHHHHHHHHhccCchhHHHHH-hCCcHHHHHHHHhc
Q 025930 170 QNSNNEASPIRRHIELALCHLAQHEVNAKDMI-SGGALWELVRISRD 215 (246)
Q Consensus 170 ~ll~~~~~~v~~~a~~aL~~La~~~~~~~~i~-~~g~i~~L~~ll~~ 215 (246)
.++.+....+|-.+...|+.|..+....++++ =.++...|..++..
T Consensus 173 dlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIee 219 (970)
T KOG0946|consen 173 DLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEE 219 (970)
T ss_pred HHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998666555554 36777777777765
No 51
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=98.14 E-value=1.4e-05 Score=56.43 Aligned_cols=66 Identities=30% Similarity=0.365 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHh-cCCChHHHHHHHHHHHHhh-CCchhHHHHHhc
Q 025930 47 HRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAA-NAEDPQTLRMVAGAIANLC-GNDKLQLKLRGE 112 (246)
Q Consensus 47 ~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~-~~~~~~~~~~a~~aL~~L~-~~~~~~~~l~~~ 112 (246)
+...+.+|+|++.. +.++..+++.||+|+++.... +..+|-+++.|..+++||+ .+++|++.+.+.
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 55678899999876 789999999999999987665 4467999999999999999 789999887653
No 52
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.14 E-value=6.5e-06 Score=56.62 Aligned_cols=87 Identities=26% Similarity=0.377 Sum_probs=71.9
Q ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhccC
Q 025930 115 IKALLGMV-RCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQH 193 (246)
Q Consensus 115 i~~L~~ll-~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~ 193 (246)
|+.|++.+ .++++.++..++.+|+.+.. ..++|.|..+++++++.+|..|+.+|..+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~-------------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~-- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD-------------------PEAIPALIELLKDEDPMVRRAAARALGRIG-- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH-------------------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH--
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC-------------------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC--
Confidence 57889988 78899999999988886541 146999999999999999999999999884
Q ss_pred chhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHc
Q 025930 194 EVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLT 230 (246)
Q Consensus 194 ~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~ 230 (246)
....++.|.+++.+++...++..|..+|+
T Consensus 60 --------~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 --------DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --------HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --------CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 22388999999998777888898888774
No 53
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.09 E-value=0.00023 Score=66.12 Aligned_cols=197 Identities=16% Similarity=0.176 Sum_probs=150.8
Q ss_pred hhhHHhHhhccccccHHHHHHhCCHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCCcc-------hH----------HHHH
Q 025930 7 NTISVKSEDIRAQSNQEKIVEAGGLTSLLMLLGSS-EDETIHRVAAGAIANLAMNET-------NQ----------ELIM 68 (246)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~i~~~g~i~~Li~ll~~~-~~~~~~~~a~~~L~~la~~~~-------~~----------~~i~ 68 (246)
.+...++.+ +..+|..+ .+.|+++||+.|+.. .|+.....+..++.++..+++ .+ +.++
T Consensus 42 ~A~rgLKa~--srkYR~~V-ga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fi 118 (970)
T KOG0946|consen 42 DAVRGLKAF--SRKYREEV-GAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFI 118 (970)
T ss_pred HHHHHHHHH--HHHHHHHH-HHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHH
Confidence 344555555 44555544 456789999999874 478888889999999966542 11 2333
Q ss_pred -hcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh--CCchhHHHHHh-cCCHHHHHHHhcCCCHHHHHHHHHHHHHhhccc
Q 025930 69 -TQGGIGLLSTTAANAEDPQTLRMVAGAIANLC--GNDKLQLKLRG-EGGIKALLGMVRCGHPDVLAQVARGIANFAKCE 144 (246)
Q Consensus 69 -~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~--~~~~~~~~l~~-~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~ 144 (246)
..+.|..++..+.. .|..++..+...+.++- ...+.++.+.. .-+|..++++|.+..+.++..++-.|+.|+.
T Consensus 119 k~qd~I~lll~~~e~-~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k-- 195 (970)
T KOG0946|consen 119 KNQDNITLLLQSLEE-FDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVK-- 195 (970)
T ss_pred cCchhHHHHHHHHHh-hchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHc--
Confidence 35667788888887 57899999999998886 55677877764 5689999999998888899999999999994
Q ss_pred ccccccCChhhhHHHHhCCChHHHHHcccCC----ChhHHHHHHHHHHHhcc-CchhHHHHHhCCcHHHHHHHHhc
Q 025930 145 SRASTQGTKTGRSLLIDDGALPWIVQNSNNE----ASPIRRHIELALCHLAQ-HEVNAKDMISGGALWELVRISRD 215 (246)
Q Consensus 145 ~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~----~~~v~~~a~~aL~~La~-~~~~~~~i~~~g~i~~L~~ll~~ 215 (246)
+++..++.+.=++++..|..++..+ ..-|-+.|+..|.||-. +..+..-|.+.+-+|.|.+++..
T Consensus 196 ------~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~ 265 (970)
T KOG0946|consen 196 ------DNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSV 265 (970)
T ss_pred ------cCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCc
Confidence 5566666666678999999999665 23688999999999976 66788888899999999988864
No 54
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.09 E-value=9.8e-05 Score=64.02 Aligned_cols=233 Identities=16% Similarity=0.055 Sum_probs=149.5
Q ss_pred hhHHhHhhccccccHHHHHHhCC-HHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHH-hcCCC
Q 025930 8 TISVKSEDIRAQSNQEKIVEAGG-LTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTA-ANAED 85 (246)
Q Consensus 8 ~~~~~~~~~~~~~~~~~i~~~g~-i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll-~~~~~ 85 (246)
+.++++.++.....+....+-.. ...|-..++++++....-.|+++|-.+...++.|..++..+|+..++..+ +...+
T Consensus 134 ~~~Ils~la~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~ 213 (442)
T KOG2759|consen 134 SFRILSKLACFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCG 213 (442)
T ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcc
Confidence 45666666555444433322222 34455566665566677789999999999999999999999999998877 55556
Q ss_pred hHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhcC-CCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCC
Q 025930 86 PQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRC-GHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGA 164 (246)
Q Consensus 86 ~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~ 164 (246)
.+++=+.+.+++-|+-++...+.+-..+.++.|.+++++ ..+.+.+-++.+++|+.... ++.....+....|+..++
T Consensus 214 ~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~--~~~~~~k~~~~~mv~~~v 291 (442)
T KOG2759|consen 214 FQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKG--PDRETKKDIASQMVLCKV 291 (442)
T ss_pred hhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--chhhHHHHHHHHHHhcCc
Confidence 788888999999999888888888888999999999984 45678889999999998421 000000244466777776
Q ss_pred hHHHHHcccCC--ChhHHHHHHHHHH-------Hhc---------------cCchh---------HHHHHh--CCcHHHH
Q 025930 165 LPWIVQNSNNE--ASPIRRHIELALC-------HLA---------------QHEVN---------AKDMIS--GGALWEL 209 (246)
Q Consensus 165 i~~Lv~ll~~~--~~~v~~~a~~aL~-------~La---------------~~~~~---------~~~i~~--~g~i~~L 209 (246)
.+.+-.|.... |+++....-..-. .|+ .+|.+ ...+.+ ...+..|
T Consensus 292 ~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL 371 (442)
T KOG2759|consen 292 LKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKIL 371 (442)
T ss_pred hHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHH
Confidence 66665555433 4444433322211 122 22222 222222 2456778
Q ss_pred HHHHhcCCHHHHHHHHHHHHc----cChhHHHHHHHh
Q 025930 210 VRISRDCSREDIRTLAHRTLT----SSPAFQAEMRRL 242 (246)
Q Consensus 210 ~~ll~~~~~~~~~~~A~~~L~----~~~~~~~e~~~~ 242 (246)
+++++.+.++.+...|.--+. ..|+-+.=+.++
T Consensus 372 ~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ 408 (442)
T KOG2759|consen 372 IKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKY 408 (442)
T ss_pred HHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHh
Confidence 888887766666555553333 355544444443
No 55
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.08 E-value=0.0006 Score=57.08 Aligned_cols=210 Identities=17% Similarity=0.166 Sum_probs=141.2
Q ss_pred hhhHHhHhhccccccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHh-------cCcHHHHHHH
Q 025930 7 NTISVKSEDIRAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMT-------QGGIGLLSTT 79 (246)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~-------~g~i~~L~~l 79 (246)
.+.+.+-|++..++-++.+... .++.+++.+-.+ ....-+..|..|.|++.++..-..+.. .|........
T Consensus 61 ~a~~alVnlsq~~~l~~~ll~~-~~k~l~~~~~~p-~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~ 138 (353)
T KOG2973|consen 61 PAATALVNLSQKEELRKKLLQD-LLKVLMDMLTDP-QSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAF 138 (353)
T ss_pred HHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHhcCc-ccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHH
Confidence 4566788888888888888887 777777777664 334567789999999999654443321 2334444455
Q ss_pred HhcCCChH-HHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHh--cCCCHHHH-HHHHHHHHHhhcccccccccCChhh
Q 025930 80 AANAEDPQ-TLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMV--RCGHPDVL-AQVARGIANFAKCESRASTQGTKTG 155 (246)
Q Consensus 80 l~~~~~~~-~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll--~~~~~~~~-~~a~~~L~nL~~~~~~~~~~~~~~~ 155 (246)
..++.+.. -..+.+..+.|++..+..+..+.+...++ .-+++ .+.++.++ .-+++++.|.|+. ...
T Consensus 139 ~d~~~n~~a~f~ylA~vf~nls~~~~gR~l~~~~k~~p-~~kll~ft~~~s~vRr~GvagtlkN~cFd---------~~~ 208 (353)
T KOG2973|consen 139 CDKSYNAYAEFHYLAPVFANLSQFEAGRKLLLEPKRFP-DQKLLPFTSEDSQVRRGGVAGTLKNCCFD---------AKL 208 (353)
T ss_pred hCcccccccchhHHHHHHHHHhhhhhhhhHhcchhhhh-HhhhhcccccchhhhccchHHHHHhhhcc---------chh
Confidence 55433321 23477888999999999998887666322 22222 23455565 4577999999963 234
Q ss_pred hHHHHhCC--ChHHHH---------------------Hccc-----CCChhHHHHHHHHHHHhccCchhHHHHHhCCcHH
Q 025930 156 RSLLIDDG--ALPWIV---------------------QNSN-----NEASPIRRHIELALCHLAQHEVNAKDMISGGALW 207 (246)
Q Consensus 156 ~~~l~~~g--~i~~Lv---------------------~ll~-----~~~~~v~~~a~~aL~~La~~~~~~~~i~~~g~i~ 207 (246)
...+.+.+ .+|.|+ +++- .+++.+|+.-+.+|.-||....+|+.++..|+-+
T Consensus 209 h~~lL~e~~~lLp~iLlPlagpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYp 288 (353)
T KOG2973|consen 209 HEVLLDESINLLPAILLPLAGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSKGVYP 288 (353)
T ss_pred HHHHhcchHHHHHHHHhhcCCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchH
Confidence 44444322 233322 3332 1378999999999999999999999999999888
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 025930 208 ELVRISRDCSREDIRTLAHRT 228 (246)
Q Consensus 208 ~L~~ll~~~~~~~~~~~A~~~ 228 (246)
.+-.+=+..++++++++.-..
T Consensus 289 ilRElhk~e~ded~~~ace~v 309 (353)
T KOG2973|consen 289 ILRELHKWEEDEDIREACEQV 309 (353)
T ss_pred HHHHHhcCCCcHHHHHHHHHH
Confidence 887777777777777665543
No 56
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=98.08 E-value=1e-05 Score=47.13 Aligned_cols=40 Identities=40% Similarity=0.604 Sum_probs=35.9
Q ss_pred cccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q 025930 19 QSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAM 59 (246)
Q Consensus 19 ~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~ 59 (246)
++++..+++.|++++|+++++++ ++.+++.|+++|+|++.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~-~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSE-DEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHcC
Confidence 45889999999999999999975 88899999999999873
No 57
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.04 E-value=2.1e-05 Score=71.96 Aligned_cols=177 Identities=14% Similarity=0.154 Sum_probs=102.7
Q ss_pred CHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHH
Q 025930 30 GLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLK 108 (246)
Q Consensus 30 ~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~ 108 (246)
.++.+.+++.++ +|.+|+.|+.++.++... ++. +... .++.+..++.+ .|+.+...|+.++..+-.++.....
T Consensus 115 l~~~v~~ll~~~-~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL~d-~~~~V~~~a~~~l~~i~~~~~~~~~ 188 (526)
T PF01602_consen 115 LIPDVIKLLSDP-SPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLLSD-KDPSVVSAALSLLSEIKCNDDSYKS 188 (526)
T ss_dssp HHHHHHHHHHSS-SHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHTTH-SSHHHHHHHHHHHHHHHCTHHHHTT
T ss_pred HHHHHHHHhcCC-chHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhccC-CcchhHHHHHHHHHHHccCcchhhh
Confidence 578888999886 889999999999999644 322 1111 47888888877 5788998999999988222221111
Q ss_pred HHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHH
Q 025930 109 LRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALC 188 (246)
Q Consensus 109 l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~ 188 (246)
+. ...++.|..++...++.++..+++.+..++.. .+..... ...++.+..++.+.++.+...+..++.
T Consensus 189 ~~-~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~--------~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~ 256 (526)
T PF01602_consen 189 LI-PKLIRILCQLLSDPDPWLQIKILRLLRRYAPM--------EPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLII 256 (526)
T ss_dssp HH-HHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSS--------SHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hH-HHHHHHhhhcccccchHHHHHHHHHHHhcccC--------ChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 11 11244555555677778887777777777632 1222211 234445555555555555555555555
Q ss_pred HhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHc
Q 025930 189 HLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLT 230 (246)
Q Consensus 189 ~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~ 230 (246)
.+..++. .-..+++.|.+++. +++..++..+.++|.
T Consensus 257 ~l~~~~~-----~~~~~~~~L~~lL~-s~~~nvr~~~L~~L~ 292 (526)
T PF01602_consen 257 KLSPSPE-----LLQKAINPLIKLLS-SSDPNVRYIALDSLS 292 (526)
T ss_dssp HHSSSHH-----HHHHHHHHHHHHHT-SSSHHHHHHHHHHHH
T ss_pred HhhcchH-----HHHhhHHHHHHHhh-cccchhehhHHHHHH
Confidence 5544333 12224445555554 333334455554443
No 58
>PF05536 Neurochondrin: Neurochondrin
Probab=98.04 E-value=0.00042 Score=63.78 Aligned_cols=218 Identities=15% Similarity=0.091 Sum_probs=146.7
Q ss_pred hhhhHHhHhhccccc----cHHHHHHhCCHHHHHHHhcCCC------CHHHHHHHHHHHHHhcCCcchH--HHHHhcCcH
Q 025930 6 LNTISVKSEDIRAQS----NQEKIVEAGGLTSLLMLLGSSE------DETIHRVAAGAIANLAMNETNQ--ELIMTQGGI 73 (246)
Q Consensus 6 ~~~~~~~~~~~~~~~----~~~~i~~~g~i~~Li~ll~~~~------~~~~~~~a~~~L~~la~~~~~~--~~i~~~g~i 73 (246)
..++.++.++....+ +++.|-++=|.+-|-.+|+++. ....+.-|+.+|..++.+++.. ..++ +-|
T Consensus 23 fagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~~~~~a~~~~~~--~~I 100 (543)
T PF05536_consen 23 FAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCRDPELASSPQMV--SRI 100 (543)
T ss_pred HHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcCChhhhcCHHHH--HHH
Confidence 456667777755544 2445778878888888888832 2445666999999999987665 3443 369
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCCh
Q 025930 74 GLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTK 153 (246)
Q Consensus 74 ~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~ 153 (246)
|.|++++.+.++.++...++.+|..++..++.++.+++.|+++.|...+.+ .+...+.+..++.+++...+.+.. .
T Consensus 101 P~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~~~~~---~ 176 (543)
T PF05536_consen 101 PLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLLLNLLSRLGQKSW---A 176 (543)
T ss_pred HHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHHHHHHhcchhhh---h
Confidence 999999998665588889999999999999999999999999999999987 466788999999998753110000 0
Q ss_pred hhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhccCchh--HHHHHhCCc----HHHHHHHHhcCCHHHHHHHHHH
Q 025930 154 TGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQHEVN--AKDMISGGA----LWELVRISRDCSREDIRTLAHR 227 (246)
Q Consensus 154 ~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~~~--~~~i~~~g~----i~~L~~ll~~~~~~~~~~~A~~ 227 (246)
+..+.+ ...++.+...........+...+..|..+=...+. ......... ...+..++++.-.+..|..|..
T Consensus 177 ~~~~~l--~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~ 254 (543)
T PF05536_consen 177 EDSQLL--HSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDPALN 254 (543)
T ss_pred hhHHHH--HHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 111111 13456666666666677778888888887432211 111222233 3345556666556666777766
Q ss_pred HHcc
Q 025930 228 TLTS 231 (246)
Q Consensus 228 ~L~~ 231 (246)
+...
T Consensus 255 Laa~ 258 (543)
T PF05536_consen 255 LAAS 258 (543)
T ss_pred HHHH
Confidence 5543
No 59
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.98 E-value=4.1e-05 Score=52.57 Aligned_cols=87 Identities=25% Similarity=0.312 Sum_probs=67.3
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHHHH
Q 025930 31 LTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLR 110 (246)
Q Consensus 31 i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~ 110 (246)
||.|++.|.+..++.++..|+.+|+++... ..++.|..++++ +|+.++..++.+|..+-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~~----------~~~~~L~~~l~d-~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGDP----------EAIPALIELLKD-EDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTHH----------HHHHHHHHHHTS-SSHHHHHHHHHHHHCCH----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCCH----------hHHHHHHHHHcC-CCHHHHHHHHHHHHHhC----------
Confidence 689999994445899999999999955321 358899999976 78999999999999872
Q ss_pred hcCCHHHHHHHhcCC-CHHHHHHHHHHHH
Q 025930 111 GEGGIKALLGMVRCG-HPDVLAQVARGIA 138 (246)
Q Consensus 111 ~~g~i~~L~~ll~~~-~~~~~~~a~~~L~ 138 (246)
....++.|.+++.++ +..++..|+.+|+
T Consensus 60 ~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 234789999999865 4556788887764
No 60
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=0.0012 Score=63.40 Aligned_cols=134 Identities=19% Similarity=0.167 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHhh-CCchhHHHH----HhcCCHHHHHHHhc-CCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHh
Q 025930 88 TLRMVAGAIANLC-GNDKLQLKL----RGEGGIKALLGMVR-CGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLID 161 (246)
Q Consensus 88 ~~~~a~~aL~~L~-~~~~~~~~l----~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~ 161 (246)
-.+.++.||.|+. .+++....+ .-.|-.+.+...++ .+++.+++-|+..+.-+..+ .++...+..
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan---------~~Cv~~~a~ 1811 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATAN---------KECVTDLAT 1811 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcc---------cHHHHHHHh
Confidence 4558899999997 567554443 23466777777776 46788999999998888854 588899999
Q ss_pred CCChHHHHHcccCCChhHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 025930 162 DGALPWIVQNSNNEASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTS 231 (246)
Q Consensus 162 ~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~ 231 (246)
.|++..|+++|+ ..|..|..++.+|..|+++++..++-...|++..+..++-..++..+|+.|.++++.
T Consensus 1812 ~~vL~~LL~lLH-S~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaK 1880 (2235)
T KOG1789|consen 1812 CNVLTTLLTLLH-SQPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAK 1880 (2235)
T ss_pred hhHHHHHHHHHh-cChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHH
Confidence 999999999997 568899999999999999999989999999999999999888889999999988864
No 61
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.91 E-value=0.001 Score=59.04 Aligned_cols=89 Identities=12% Similarity=-0.002 Sum_probs=64.5
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCC
Q 025930 73 IGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGT 152 (246)
Q Consensus 73 i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~ 152 (246)
.+.|..++.+ .++.++..++.++.. ......+.+..+|+++++.++..|+++++.+..
T Consensus 119 ~~~L~~~L~~-~~p~vR~aal~al~~-----------r~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~---------- 176 (410)
T TIGR02270 119 EPWLEPLLAA-SEPPGRAIGLAALGA-----------HRHDPGPALEAALTHEDALVRAAALRALGELPR---------- 176 (410)
T ss_pred HHHHHHHhcC-CChHHHHHHHHHHHh-----------hccChHHHHHHHhcCCCHHHHHHHHHHHHhhcc----------
Confidence 4455666655 456666555555544 112346788888989999999999999988773
Q ss_pred hhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhcc
Q 025930 153 KTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQ 192 (246)
Q Consensus 153 ~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~ 192 (246)
...++.|...+.+.++.||..|..++..+..
T Consensus 177 ---------~~a~~~L~~al~d~~~~VR~aA~~al~~lG~ 207 (410)
T TIGR02270 177 ---------RLSESTLRLYLRDSDPEVRFAALEAGLLAGS 207 (410)
T ss_pred ---------ccchHHHHHHHcCCCHHHHHHHHHHHHHcCC
Confidence 2567778888999999999999998877743
No 62
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.89 E-value=3.2e-05 Score=45.02 Aligned_cols=40 Identities=23% Similarity=0.407 Sum_probs=36.6
Q ss_pred hhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhcc
Q 025930 153 KTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQ 192 (246)
Q Consensus 153 ~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~ 192 (246)
++.+..+.+.|+++.|+.++..+++++++.++++|.||+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 3578889999999999999999999999999999999974
No 63
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.83 E-value=0.00092 Score=64.48 Aligned_cols=187 Identities=23% Similarity=0.233 Sum_probs=129.5
Q ss_pred CHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh------CCc
Q 025930 30 GLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC------GND 103 (246)
Q Consensus 30 ~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~------~~~ 103 (246)
.+..|+.-|-++ |-++++.|-.+|-++...+. ..+.|..++....|++++..|+-.++.++ -+.
T Consensus 5 ~l~qLl~~l~sp-Dn~vr~~Ae~~l~~~~~~~~---------~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~ 74 (1075)
T KOG2171|consen 5 PLEQLLQQLLSP-DNEVRRQAEEALETLAKTEP---------LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSA 74 (1075)
T ss_pred HHHHHHHHhcCC-CchHHHHHHHHHHHhhcccc---------hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCH
Confidence 456777777787 44568889999999887763 67888899988899999999999998887 344
Q ss_pred hhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHH
Q 025930 104 KLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHI 183 (246)
Q Consensus 104 ~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a 183 (246)
+.+..+.. ..|.-..+...+.++.+.+.++..++..+ .++ -+-+.++.|.+..+++++..|+.|
T Consensus 75 e~~~siks----~lL~~~~~E~~~~vr~k~~dviAeia~~~-------l~e-----~WPell~~L~q~~~S~~~~~rE~a 138 (1075)
T KOG2171|consen 75 EVQQSIKS----SLLEIIQSETEPSVRHKLADVIAEIARND-------LPE-----KWPELLQFLFQSTKSPNPSLRESA 138 (1075)
T ss_pred HHHHHHHH----HHHHHHHhccchHHHHHHHHHHHHHHHhc-------ccc-----chHHHHHHHHHHhcCCCcchhHHH
Confidence 55555533 23333445667889999999999998642 122 345679999999999999999999
Q ss_pred HHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHcc-Ch---hHHHHHHHhh
Q 025930 184 ELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTS-SP---AFQAEMRRLR 243 (246)
Q Consensus 184 ~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~-~~---~~~~e~~~~~ 243 (246)
...|+.+...-.+...=--....+-+.+-+.+++.. +|.+|.+++.. .+ ..+.++++.+
T Consensus 139 l~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~-vr~~a~rA~~a~~~~~~~~~~~~~~~~ 201 (1075)
T KOG2171|consen 139 LLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSP-VRVAAVRALGAFAEYLENNKSEVDKFR 201 (1075)
T ss_pred HHHHHhhhhhhccccchhHHHHHHHHHHhccCCcch-HHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 999999976333321100001233344444555666 88888888853 22 2355665543
No 64
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.83 E-value=0.00011 Score=65.64 Aligned_cols=203 Identities=12% Similarity=0.061 Sum_probs=139.3
Q ss_pred ehhhhhHHhHhhccc-cccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHh
Q 025930 4 QILNTISVKSEDIRA-QSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAA 81 (246)
Q Consensus 4 ~~~~~~~~~~~~~~~-~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~ 81 (246)
|+.+|.-.++.++.+ .-.|.-+.+..+.++|++.|+.+ +-.+.--+...++|.... ...+..+.+.|.+..|++++.
T Consensus 405 ~~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~P-eimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~ 483 (743)
T COG5369 405 DFVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNP-EIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVM 483 (743)
T ss_pred HHHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCc-cceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhh
Confidence 455566666666433 12344455677899999999875 333333477888888655 778899999999999999998
Q ss_pred cCCChHHHHHHHHHHHHhhCC-c-hhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHH
Q 025930 82 NAEDPQTLRMVAGAIANLCGN-D-KLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLL 159 (246)
Q Consensus 82 ~~~~~~~~~~a~~aL~~L~~~-~-~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l 159 (246)
+. |..++.+..|.++++..+ . +.+-.+...-++..++++...++..++.++...|+|+.... +.+.+.++.+
T Consensus 484 sK-DdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~-----~knEkskdv~ 557 (743)
T COG5369 484 SK-DDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDT-----SKNEKSKDVF 557 (743)
T ss_pred cc-hhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhccccc-----ccccccceeE
Confidence 74 678899999999999833 2 33444556667888999999999999999999999997521 1112233333
Q ss_pred HhCC----ChHHHHHcccCCChhHHHHHHHHHHHhccCchhHHHHHh--CCcHHHHHHHH
Q 025930 160 IDDG----ALPWIVQNSNNEASPIRRHIELALCHLAQHEVNAKDMIS--GGALWELVRIS 213 (246)
Q Consensus 160 ~~~g----~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~~~~~~i~~--~g~i~~L~~ll 213 (246)
.+.. ..+.|+.-+...+|-.....+..|.+++...++.+.++. ...+..+.+++
T Consensus 558 ~K~~p~~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil 617 (743)
T COG5369 558 IKATPRRYLFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEIL 617 (743)
T ss_pred EecChHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHH
Confidence 3221 355677777777887777789999988775555444442 34444444444
No 65
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.81 E-value=0.0017 Score=59.39 Aligned_cols=177 Identities=13% Similarity=0.137 Sum_probs=115.3
Q ss_pred CCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHH
Q 025930 29 GGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLK 108 (246)
Q Consensus 29 g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~ 108 (246)
-+.+..++++.+ ++...++-+--++..+...++.--.+ .+..+.+=+.+ +++.++..|+.+|.+++ +++....
T Consensus 42 ~~~~~vi~l~~s-~~~~~Krl~yl~l~~~~~~~~~~~~l----~~n~l~kdl~~-~n~~~~~lAL~~l~~i~-~~~~~~~ 114 (526)
T PF01602_consen 42 FLFMEVIKLISS-KDLELKRLGYLYLSLYLHEDPELLIL----IINSLQKDLNS-PNPYIRGLALRTLSNIR-TPEMAEP 114 (526)
T ss_dssp STHHHHHCTCSS-SSHHHHHHHHHHHHHHTTTSHHHHHH----HHHHHHHHHCS-SSHHHHHHHHHHHHHH--SHHHHHH
T ss_pred hHHHHHHHHhCC-CCHHHHHHHHHHHHHHhhcchhHHHH----HHHHHHHhhcC-CCHHHHHHHHhhhhhhc-ccchhhH
Confidence 568888888886 47777776666666666554332222 24445554555 67889999999999987 4444444
Q ss_pred HHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHH
Q 025930 109 LRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALC 188 (246)
Q Consensus 109 l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~ 188 (246)
+ ++.+.+++.++++.+++.|+.++..+... +++ .+... .++.+..++.+.++.++..|+.++.
T Consensus 115 l-----~~~v~~ll~~~~~~VRk~A~~~l~~i~~~--------~p~---~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~ 177 (526)
T PF01602_consen 115 L-----IPDVIKLLSDPSPYVRKKAALALLKIYRK--------DPD---LVEDE-LIPKLKQLLSDKDPSVVSAALSLLS 177 (526)
T ss_dssp H-----HHHHHHHHHSSSHHHHHHHHHHHHHHHHH--------CHC---CHHGG-HHHHHHHHTTHSSHHHHHHHHHHHH
T ss_pred H-----HHHHHHHhcCCchHHHHHHHHHHHHHhcc--------CHH---HHHHH-HHHHHhhhccCCcchhHHHHHHHHH
Confidence 3 67889999999999999999999998841 122 22223 6899999999999999999999999
Q ss_pred HhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 025930 189 HLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTS 231 (246)
Q Consensus 189 ~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~ 231 (246)
.+-.+++.-..+ -...++.|.+++...+ +-.+..+.+.+..
T Consensus 178 ~i~~~~~~~~~~-~~~~~~~L~~~l~~~~-~~~q~~il~~l~~ 218 (526)
T PF01602_consen 178 EIKCNDDSYKSL-IPKLIRILCQLLSDPD-PWLQIKILRLLRR 218 (526)
T ss_dssp HHHCTHHHHTTH-HHHHHHHHHHHHTCCS-HHHHHHHHHHHTT
T ss_pred HHccCcchhhhh-HHHHHHHhhhcccccc-hHHHHHHHHHHHh
Confidence 992122211100 1112333444444334 3345666666654
No 66
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.79 E-value=0.0014 Score=50.01 Aligned_cols=121 Identities=12% Similarity=0.143 Sum_probs=97.7
Q ss_pred HHHHHHhCCHHHHHHHhcCCCC-----HHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCC-ChHHHHHHHHH
Q 025930 22 QEKIVEAGGLTSLLMLLGSSED-----ETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAE-DPQTLRMVAGA 95 (246)
Q Consensus 22 ~~~i~~~g~i~~Li~ll~~~~~-----~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~~a~~a 95 (246)
...++..||++.|++...++.. ......+..++..|..+....+...+...|..+...+.... |..+.+.++..
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI 83 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI 83 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence 3678899999999999999863 34566688888888888766777777777888877776543 78899899999
Q ss_pred HHHhhCCchh-HHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 025930 96 IANLCGNDKL-QLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAK 142 (246)
Q Consensus 96 L~~L~~~~~~-~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~ 142 (246)
|-++..++.. ...+.+.=.++.|+..|...+++++.++...+-.|-.
T Consensus 84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~ 131 (160)
T PF11841_consen 84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFL 131 (160)
T ss_pred HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 9999965555 5556666689999999999999999999998887764
No 67
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.79 E-value=0.0025 Score=55.87 Aligned_cols=183 Identities=15% Similarity=0.123 Sum_probs=133.3
Q ss_pred ccHHHHHHhCCHHHHHHHhcCCCCHHHHHH------HHHHHHHhc-CCcchHHHHHhcCcHHHHHHHHh-cCCChHHHHH
Q 025930 20 SNQEKIVEAGGLTSLLMLLGSSEDETIHRV------AAGAIANLA-MNETNQELIMTQGGIGLLSTTAA-NAEDPQTLRM 91 (246)
Q Consensus 20 ~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~------a~~~L~~la-~~~~~~~~i~~~g~i~~L~~ll~-~~~~~~~~~~ 91 (246)
...+.+++.++++-|++-+..- |+.+.+. +..++-|+. .++.....+++.|.+.+|+.-+. ...-..-..+
T Consensus 167 vLidaLvdg~vlaLLvqnveRL-dEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~Y 245 (536)
T KOG2734|consen 167 VLIDALVDGQVLALLVQNVERL-DESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQY 245 (536)
T ss_pred HHHHHHHhccHHHHHHHHHHHh-hhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHH
Confidence 4567888899999999888774 4444443 555666774 44778889999999999887443 3222223447
Q ss_pred HHHHHHHhh-CCchhHHHHHhcCCHHHHHHHhc---CC------CHHHHHHHHHHHHHhhcccccccccCChhhhHHHHh
Q 025930 92 VAGAIANLC-GNDKLQLKLRGEGGIKALLGMVR---CG------HPDVLAQVARGIANFAKCESRASTQGTKTGRSLLID 161 (246)
Q Consensus 92 a~~aL~~L~-~~~~~~~~l~~~g~i~~L~~ll~---~~------~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~ 161 (246)
|...|.-+- .+.+++..+...++++.++.-+. .. ..+..++-...||.+-. .+++|+.+.+
T Consensus 246 asEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm---------~~~nr~~Fl~ 316 (536)
T KOG2734|consen 246 ASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLM---------APANRERFLK 316 (536)
T ss_pred HHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhc---------Chhhhhhhhc
Confidence 888887776 55668888999999999998774 11 34567777777777663 4699999998
Q ss_pred CCChHHHHHcccCCChhHHHHHHHHHHHhccCch---hHHHHHhCCcHHHHHHHH
Q 025930 162 DGALPWIVQNSNNEASPIRRHIELALCHLAQHEV---NAKDMISGGALWELVRIS 213 (246)
Q Consensus 162 ~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~~---~~~~i~~~g~i~~L~~ll 213 (246)
..+++.+.-+++. ....+..++++|-...++++ ++..+++.+|...+..+.
T Consensus 317 ~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~F 370 (536)
T KOG2734|consen 317 GEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLF 370 (536)
T ss_pred cccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHH
Confidence 8888877777764 66788889999999987554 677888888877765544
No 68
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.72 E-value=0.0021 Score=56.37 Aligned_cols=191 Identities=12% Similarity=0.038 Sum_probs=140.5
Q ss_pred hHhhccccccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcC-CChHHHH
Q 025930 12 KSEDIRAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANA-EDPQTLR 90 (246)
Q Consensus 12 ~~~~~~~~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~-~~~~~~~ 90 (246)
+.-+..+++-|..+.-.-..+.+..++-+. +..++-.+.++++.+..+++.-..+.+.+.--.++.-+... .+..=++
T Consensus 8 v~l~~~~p~l~~~~~~~~~~~~i~~~lL~~-~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~ 86 (371)
T PF14664_consen 8 VDLLKRHPTLKYDLVLSFFGERIQCMLLSD-SKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVERE 86 (371)
T ss_pred HHHHHhCchhhhhhhHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHH
Confidence 334445666666666666666766555454 47788889999999999988888888877444444444432 2333467
Q ss_pred HHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHH
Q 025930 91 MVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQ 170 (246)
Q Consensus 91 ~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ 170 (246)
+|...++.+..-....+. +..|++..++.+..+++...+..|..+++.++. ..-+.+...|++..|.+
T Consensus 87 QALkliR~~l~~~~~~~~-~~~~vvralvaiae~~~D~lr~~cletL~El~l-----------~~P~lv~~~gG~~~L~~ 154 (371)
T PF14664_consen 87 QALKLIRAFLEIKKGPKE-IPRGVVRALVAIAEHEDDRLRRICLETLCELAL-----------LNPELVAECGGIRVLLR 154 (371)
T ss_pred HHHHHHHHHHHhcCCccc-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHh-----------hCHHHHHHcCCHHHHHH
Confidence 899999888744333222 356788999999998888999999999999995 33456668999999999
Q ss_pred cccCCChhHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhc
Q 025930 171 NSNNEASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRD 215 (246)
Q Consensus 171 ll~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~ 215 (246)
.+.++..++.+..+.++..+-.+|..|+-+...-.+..++.-..+
T Consensus 155 ~l~d~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd 199 (371)
T PF14664_consen 155 ALIDGSFSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTD 199 (371)
T ss_pred HHHhccHhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhh
Confidence 998776678888999999999999999888876666666665543
No 69
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=0.0027 Score=61.21 Aligned_cols=133 Identities=17% Similarity=0.157 Sum_probs=105.1
Q ss_pred hhHHhHhh-ccccccHH----HHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhc
Q 025930 8 TISVKSED-IRAQSNQE----KIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAAN 82 (246)
Q Consensus 8 ~~~~~~~~-~~~~~~~~----~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~ 82 (246)
++..+.|+ ..+++... ...--|-.+-++..++...++.++..|..++..++.+.+.-..+++.|.+..|+.++.+
T Consensus 1745 ~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~lLHS 1824 (2235)
T KOG1789|consen 1745 TLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLTLLHS 1824 (2235)
T ss_pred HHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHHHhc
Confidence 45566666 33442222 12224778888888888778889999999999999998899999999999999999998
Q ss_pred CCChHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhc-CCCHHHHHHHHHHHHHhhc
Q 025930 83 AEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVR-CGHPDVLAQVARGIANFAK 142 (246)
Q Consensus 83 ~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~nL~~ 142 (246)
-|..++.++..|..|+++++......+.|++.-+.+++- +.+++.+.+++..+.-|..
T Consensus 1825 --~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~A 1883 (2235)
T KOG1789|consen 1825 --QPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQA 1883 (2235)
T ss_pred --ChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhh
Confidence 377888999999999999999999889998888887775 4567777788877777664
No 70
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.67 E-value=0.00025 Score=50.12 Aligned_cols=66 Identities=23% Similarity=0.286 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHccc--CCChhHHHHHHHHHHHhcc-CchhHHHHHh
Q 025930 129 VLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSN--NEASPIRRHIELALCHLAQ-HEVNAKDMIS 202 (246)
Q Consensus 129 ~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~--~~~~~v~~~a~~aL~~La~-~~~~~~~i~~ 202 (246)
.+...+++++|||. .++..++.+.+.|++|.+++.+. +++|-+++.|..|+.+|+. ++++.+.+.+
T Consensus 2 ~K~~lvrlianl~~--------~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCY--------KNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHh--------CCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 35677899999994 67899999999999999999774 4489999999999999998 7778766654
No 71
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.67 E-value=0.00018 Score=58.71 Aligned_cols=184 Identities=9% Similarity=0.029 Sum_probs=107.8
Q ss_pred CCCCHHHHHHHHHHHHHhcCCc---chHHHHHh-c-CcHHHHHHHHhcCCChHHHHHHHHHHHHhhCC--chhHHHHHhc
Q 025930 40 SSEDETIHRVAAGAIANLAMNE---TNQELIMT-Q-GGIGLLSTTAANAEDPQTLRMVAGAIANLCGN--DKLQLKLRGE 112 (246)
Q Consensus 40 ~~~~~~~~~~a~~~L~~la~~~---~~~~~i~~-~-g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~--~~~~~~l~~~ 112 (246)
+..+...+..|...|..+..+. .....+.+ . ..+..+...+.+ ....+...|+.++..++.. ...... -.
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d-~Rs~v~~~A~~~l~~l~~~l~~~~~~~--~~ 93 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSD-LRSKVSKTACQLLSDLARQLGSHFEPY--AD 93 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-H-H---HHHHHHHHHHHHHHHHGGGGHHH--HH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHhHhHHHH--HH
Confidence 3357877888888888885443 33344432 1 233455555554 3456778899999998822 222222 22
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCC-hHHHHHcccCCChhHHHHHHHHHHHhc
Q 025930 113 GGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGA-LPWIVQNSNNEASPIRRHIELALCHLA 191 (246)
Q Consensus 113 g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~-i~~Lv~ll~~~~~~v~~~a~~aL~~La 191 (246)
..+|.|++.+.++...++..|..+|..++.+- + .- ... ++.+...+.+.++.+|..++.++..+.
T Consensus 94 ~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~--------~-~~-----~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l 159 (228)
T PF12348_consen 94 ILLPPLLKKLGDSKKFIREAANNALDAIIESC--------S-YS-----PKILLEILSQGLKSKNPQVREECAEWLAIIL 159 (228)
T ss_dssp HHHHHHHHGGG---HHHHHHHHHHHHHHHTTS----------H-------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHHC--------C-cH-----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 36899999999988899999999999998421 1 00 123 667777888889999999999999886
Q ss_pred cCch-hHHHHHh----CCcHHHHHHHHhcCCHHHHHHHHHHHHccChhHHHHHHH
Q 025930 192 QHEV-NAKDMIS----GGALWELVRISRDCSREDIRTLAHRTLTSSPAFQAEMRR 241 (246)
Q Consensus 192 ~~~~-~~~~i~~----~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~~~~~e~~~ 241 (246)
..-. ....+.. ...++.+...+. +.+.++|..|.+++...-+.-+|-++
T Consensus 160 ~~~~~~~~~l~~~~~~~~l~~~l~~~l~-D~~~~VR~~Ar~~~~~l~~~~~~~a~ 213 (228)
T PF12348_consen 160 EKWGSDSSVLQKSAFLKQLVKALVKLLS-DADPEVREAARECLWALYSHFPERAE 213 (228)
T ss_dssp TT-----GGG--HHHHHHHHHHHHHHHT-SS-HHHHHHHHHHHHHHHHHH-HHH-
T ss_pred HHccchHhhhcccchHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHCCHhhc
Confidence 5222 1112211 235566666666 66778999999999877666665543
No 72
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.0064 Score=51.70 Aligned_cols=199 Identities=18% Similarity=0.146 Sum_probs=124.5
Q ss_pred HHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHH--HHHHhcCCChHHHHHHHHHHHHh
Q 025930 22 QEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLL--STTAANAEDPQTLRMVAGAIANL 99 (246)
Q Consensus 22 ~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L--~~ll~~~~~~~~~~~a~~aL~~L 99 (246)
...++.+|+++.++..+... |..+-+.|...+-.++.-+..-+.+.+.+....+ .++.-.. +.-.+-..+..+..+
T Consensus 121 illvvNaeilklildcIgge-ddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakc-ndiaRvRVleLIiei 198 (524)
T KOG4413|consen 121 ILLVVNAEILKLILDCIGGE-DDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKC-NDIARVRVLELIIEI 198 (524)
T ss_pred HHHHhhhhHHHHHHHHHcCC-cHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhh-hhHHHHHHHHHHHHH
Confidence 44667899999999999886 6677888999999999998888888877666543 3333332 233444566666666
Q ss_pred h-CCchhHHHHHhcCCHHHHHHHhcC-CCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChH-----------
Q 025930 100 C-GNDKLQLKLRGEGGIKALLGMVRC-GHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALP----------- 166 (246)
Q Consensus 100 ~-~~~~~~~~l~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~----------- 166 (246)
+ -+++.....-..|.+..|..=|+- +|.-+..+++.....|+..+ ++++-+.+.|.|.
T Consensus 199 fSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaete---------HgreflaQeglIdlicnIIsGads 269 (524)
T KOG4413|consen 199 FSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETE---------HGREFLAQEGLIDLICNIISGADS 269 (524)
T ss_pred HhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHh---------hhhhhcchhhHHHHHHHHhhCCCC
Confidence 5 567777777778888777776653 33334444444444444221 1111111111111
Q ss_pred --------------------------------------HHHHcccCCChhHHHHHHHHHHHhccCchhHHHHHhCCc--H
Q 025930 167 --------------------------------------WIVQNSNNEASPIRRHIELALCHLAQHEVNAKDMISGGA--L 206 (246)
Q Consensus 167 --------------------------------------~Lv~ll~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~g~--i 206 (246)
--.......|++..+.|..+++.|.++.++.+.+..-|. .
T Consensus 270 dPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaa 349 (524)
T KOG4413|consen 270 DPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAA 349 (524)
T ss_pred CcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHH
Confidence 112234446888999999999999998888776666554 3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHcc
Q 025930 207 WELVRISRDCSREDIRTLAHRTLTS 231 (246)
Q Consensus 207 ~~L~~ll~~~~~~~~~~~A~~~L~~ 231 (246)
..++.-..+.+......++..+|+.
T Consensus 350 ehllarafdqnahakqeaaihaLaa 374 (524)
T KOG4413|consen 350 EHLLARAFDQNAHAKQEAAIHALAA 374 (524)
T ss_pred HHHHHHHhcccccchHHHHHHHHHH
Confidence 3444444444444456677777764
No 73
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.58 E-value=0.0027 Score=53.31 Aligned_cols=159 Identities=18% Similarity=0.210 Sum_probs=110.7
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHH-hcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHHHH
Q 025930 32 TSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIM-TQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLR 110 (246)
Q Consensus 32 ~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~-~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~ 110 (246)
-.++.++.+. +|.++..|+..+.+++.. ..+.... +.-.++.+.+++... ++ .+.|+.||-|++.+++.++.++
T Consensus 6 ~elv~ll~~~-sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~-~~--~~~a~~alVnlsq~~~l~~~ll 80 (353)
T KOG2973|consen 6 VELVELLHSL-SPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDL-DP--AEPAATALVNLSQKEELRKKLL 80 (353)
T ss_pred HHHHHHhccC-ChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCc-cc--ccHHHHHHHHHHhhHHHHHHHH
Confidence 4578888886 788999999999999766 2333222 233466788888863 33 5589999999999999999998
Q ss_pred hcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHh------CCChHHHHHcccCC-Ch-hHHHH
Q 025930 111 GEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLID------DGALPWIVQNSNNE-AS-PIRRH 182 (246)
Q Consensus 111 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~------~g~i~~Lv~ll~~~-~~-~v~~~ 182 (246)
+. .++.++.++-.+...+....+.+|.||+.. ++.....+.+ .|.....+..+..+ +. .--.+
T Consensus 81 ~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~--------~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~y 151 (353)
T KOG2973|consen 81 QD-LLKVLMDMLTDPQSPLADLICMLLSNLSRD--------DDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHY 151 (353)
T ss_pred HH-HHHHHHHHhcCcccchHHHHHHHHHHhccC--------chHHHHHHHhcccccccchHHHHHHHhCcccccccchhH
Confidence 77 788888888888788899999999999953 2333333332 33344444444443 21 12244
Q ss_pred HHHHHHHhccCchhHHHHHhCC
Q 025930 183 IELALCHLAQHEVNAKDMISGG 204 (246)
Q Consensus 183 a~~aL~~La~~~~~~~~i~~~g 204 (246)
-+..+.||+..+.+|+-+.+..
T Consensus 152 lA~vf~nls~~~~gR~l~~~~k 173 (353)
T KOG2973|consen 152 LAPVFANLSQFEAGRKLLLEPK 173 (353)
T ss_pred HHHHHHHHhhhhhhhhHhcchh
Confidence 5678889998888888777654
No 74
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.57 E-value=0.0038 Score=55.45 Aligned_cols=151 Identities=16% Similarity=0.059 Sum_probs=101.5
Q ss_pred hCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHH
Q 025930 28 AGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQL 107 (246)
Q Consensus 28 ~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~ 107 (246)
..+++.|+..|...+++.+...++.++ ...++.. ++..++..+.+ .++.++..++.+|..+
T Consensus 53 ~~a~~~L~~aL~~d~~~ev~~~aa~al--~~~~~~~--------~~~~L~~~L~d-~~~~vr~aaa~ALg~i-------- 113 (410)
T TIGR02270 53 KAATELLVSALAEADEPGRVACAALAL--LAQEDAL--------DLRSVLAVLQA-GPEGLCAGIQAALGWL-------- 113 (410)
T ss_pred HhHHHHHHHHHhhCCChhHHHHHHHHH--hccCChH--------HHHHHHHHhcC-CCHHHHHHHHHHHhcC--------
Confidence 345888999996655666544433333 3333211 37888888887 5677888888888753
Q ss_pred HHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHH
Q 025930 108 KLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELAL 187 (246)
Q Consensus 108 ~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL 187 (246)
-..+..+.|..+++++++.++..++.++.... ....+.+..++++.++.++..|+.+|
T Consensus 114 --~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~--------------------~~~~~~L~~~L~d~d~~Vra~A~raL 171 (410)
T TIGR02270 114 --GGRQAEPWLEPLLAASEPPGRAIGLAALGAHR--------------------HDPGPALEAALTHEDALVRAAALRAL 171 (410)
T ss_pred --CchHHHHHHHHHhcCCChHHHHHHHHHHHhhc--------------------cChHHHHHHHhcCCCHHHHHHHHHHH
Confidence 12245788999999999998888876666533 23467888999999999999999999
Q ss_pred HHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHc
Q 025930 188 CHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLT 230 (246)
Q Consensus 188 ~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~ 230 (246)
+.+... ..++.|...+. +.++.+|..|...+.
T Consensus 172 G~l~~~----------~a~~~L~~al~-d~~~~VR~aA~~al~ 203 (410)
T TIGR02270 172 GELPRR----------LSESTLRLYLR-DSDPEVRFAALEAGL 203 (410)
T ss_pred Hhhccc----------cchHHHHHHHc-CCCHHHHHHHHHHHH
Confidence 987542 13344554444 444555555555553
No 75
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=97.55 E-value=0.018 Score=55.08 Aligned_cols=220 Identities=16% Similarity=0.162 Sum_probs=133.4
Q ss_pred HHHHhCCHHHHHHHhcCCCC----HHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHh---cCCC----hHHHHHH
Q 025930 24 KIVEAGGLTSLLMLLGSSED----ETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAA---NAED----PQTLRMV 92 (246)
Q Consensus 24 ~i~~~g~i~~Li~ll~~~~~----~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~---~~~~----~~~~~~a 92 (246)
.+.++||+..|+.++.+-.+ ..........|..++.-..||+.+.+.|+++.|+..+. ..+. ..+.+..
T Consensus 112 v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~L 191 (802)
T PF13764_consen 112 VLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQL 191 (802)
T ss_pred HhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHH
Confidence 45679999999999988432 33445567778888888999999999999999987764 2122 3455555
Q ss_pred HHHHHHhhCCch-----hHHHHHhcC--------CHHHHHHHhcCC----CHHHHHHHHHHHHHhhcccccccc------
Q 025930 93 AGAIANLCGNDK-----LQLKLRGEG--------GIKALLGMVRCG----HPDVLAQVARGIANFAKCESRAST------ 149 (246)
Q Consensus 93 ~~aL~~L~~~~~-----~~~~l~~~g--------~i~~L~~ll~~~----~~~~~~~a~~~L~nL~~~~~~~~~------ 149 (246)
+.++-.+..... ......... .+..+++.+.++ ++.+....+++|-+|+.....+..
T Consensus 192 L~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~F 271 (802)
T PF13764_consen 192 LEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEHF 271 (802)
T ss_pred HHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHHH
Confidence 555544431110 000001111 245555555432 455666666666666642111000
Q ss_pred -------------------------------cC---ChhhhHHHHhCCChHHHHHcccCCC--------hhH--------
Q 025930 150 -------------------------------QG---TKTGRSLLIDDGALPWIVQNSNNEA--------SPI-------- 179 (246)
Q Consensus 150 -------------------------------~~---~~~~~~~l~~~g~i~~Lv~ll~~~~--------~~v-------- 179 (246)
+. ....|+.+++.|++...++.+...- ++-
T Consensus 272 ~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~ps 351 (802)
T PF13764_consen 272 KPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPS 351 (802)
T ss_pred HHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCc
Confidence 11 1577899999999998888775542 222
Q ss_pred HHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHH---HHHHHHHHHccChhHHHHHHHhh
Q 025930 180 RRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSRED---IRTLAHRTLTSSPAFQAEMRRLR 243 (246)
Q Consensus 180 ~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~---~~~~A~~~L~~~~~~~~e~~~~~ 243 (246)
-..++..|.-||..+...+.++..+.++.+-++-+-++.+. +.+...++|...+.....++.+|
T Consensus 352 Lp~iL~lL~GLa~gh~~tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~~~v~~~I~~lR 418 (802)
T PF13764_consen 352 LPYILRLLRGLARGHEPTQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAENEDVAKKIQNLR 418 (802)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhcChhHHHHHHHHH
Confidence 24577888888886665566677778865555555443333 33444566677777666666654
No 76
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.52 E-value=0.0022 Score=57.76 Aligned_cols=175 Identities=16% Similarity=0.104 Sum_probs=120.3
Q ss_pred HHHHHHhcCCcchHHHHHhcCcHHHHHHHH---------hcCCChHHHHHHHHHHHHhh-CCchhHHHHHhcCCHHHHHH
Q 025930 51 AGAIANLAMNETNQELIMTQGGIGLLSTTA---------ANAEDPQTLRMVAGAIANLC-GNDKLQLKLRGEGGIKALLG 120 (246)
Q Consensus 51 ~~~L~~la~~~~~~~~i~~~g~i~~L~~ll---------~~~~~~~~~~~a~~aL~~L~-~~~~~~~~l~~~g~i~~L~~ 120 (246)
..+|.-++.++.+...+....++..|.... ....+..+...|+.+|+|+. .++..++.+++.|..+.++.
T Consensus 2 L~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~ 81 (446)
T PF10165_consen 2 LETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCE 81 (446)
T ss_pred HHHHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHH
Confidence 456777788877888888777888777766 44457888889999999998 77888999999999999999
Q ss_pred HhcCC-----CHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhC-CChHHHHHcccC-----------------CCh
Q 025930 121 MVRCG-----HPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDD-GALPWIVQNSNN-----------------EAS 177 (246)
Q Consensus 121 ll~~~-----~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~-g~i~~Lv~ll~~-----------------~~~ 177 (246)
.++.. +.++.-...++|.-++. ..++.+..+.+. +++..++..+.. .+.
T Consensus 82 ~Lk~~~~~~~~~d~~Fl~~RLLFLlTa--------~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~ 153 (446)
T PF10165_consen 82 RLKNYSDSSQPSDVEFLDSRLLFLLTA--------LRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDE 153 (446)
T ss_pred HHHcccccCCChhHHHHHHHHHHHHhc--------CChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchH
Confidence 99865 67888888888887774 446777776654 677766654421 133
Q ss_pred hHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhc--------CCHHHHHHHHHHHHccCh
Q 025930 178 PIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRD--------CSREDIRTLAHRTLTSSP 233 (246)
Q Consensus 178 ~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~--------~~~~~~~~~A~~~L~~~~ 233 (246)
..-..+++.+.|+..+......-...+.++.|+.++.. .........+.-+|.+.|
T Consensus 154 ~~l~EiLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlp 217 (446)
T PF10165_consen 154 EALSEILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLP 217 (446)
T ss_pred HHHHHHHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCC
Confidence 45666789999997633322221234455555555432 233444566666676654
No 77
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.47 E-value=0.03 Score=49.31 Aligned_cols=205 Identities=16% Similarity=0.182 Sum_probs=142.5
Q ss_pred HhhccccccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCc------chH----HHHHhcCcHHHHHHHHhc
Q 025930 13 SEDIRAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNE------TNQ----ELIMTQGGIGLLSTTAAN 82 (246)
Q Consensus 13 ~~~~~~~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~------~~~----~~i~~~g~i~~L~~ll~~ 82 (246)
.-+|.-++.--.+++-++++.|+++|.+. +-++....+..|-.|+..+ +.. ..+++.+.++.|++-+..
T Consensus 109 hvlAt~PdLYp~lveln~V~slL~LLgHe-NtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveR 187 (536)
T KOG2734|consen 109 HVLATMPDLYPILVELNAVQSLLELLGHE-NTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVER 187 (536)
T ss_pred HhhhcChHHHHHHHHhccHHHHHHHhcCC-CchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHH
Confidence 34566677777899999999999999996 6666676777777877542 222 456677888888887764
Q ss_pred CCChHH------HHHHHHHHHHhh-CCchhHHHHHhcCCHHHHHHHhcC--CCHHHHHHHHHHHHHhhcccccccccCCh
Q 025930 83 AEDPQT------LRMVAGAIANLC-GNDKLQLKLRGEGGIKALLGMVRC--GHPDVLAQVARGIANFAKCESRASTQGTK 153 (246)
Q Consensus 83 ~~~~~~------~~~a~~aL~~L~-~~~~~~~~l~~~g~i~~L~~ll~~--~~~~~~~~a~~~L~nL~~~~~~~~~~~~~ 153 (246)
-|+.+ .-++...+-|+. -.++....+++.|.+.-|++-+.. .-...+..|.-++.-+- +.++
T Consensus 188 -LdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaill--------q~s~ 258 (536)
T KOG2734|consen 188 -LDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILL--------QNSD 258 (536)
T ss_pred -hhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHh--------ccCc
Confidence 22322 335566677776 567888888888988888875542 33445677777777665 2456
Q ss_pred hhhHHHHhCCChHHHHHcc---cCCC------hhHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHH
Q 025930 154 TGRSLLIDDGALPWIVQNS---NNEA------SPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTL 224 (246)
Q Consensus 154 ~~~~~l~~~g~i~~Lv~ll---~~~~------~~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~ 224 (246)
+++..+.+-.++..+++-+ +..+ .+.-++--.+||.+-+.+.+|+.+....+++...-+++. .+.-+..
T Consensus 259 e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~--Kk~sr~S 336 (536)
T KOG2734|consen 259 ENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE--KKVSRGS 336 (536)
T ss_pred hhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH--HHHhhhh
Confidence 7888888888888887755 2222 234455567777777899999999998888877666663 3444455
Q ss_pred HHHHH
Q 025930 225 AHRTL 229 (246)
Q Consensus 225 A~~~L 229 (246)
|.+.|
T Consensus 337 alkvL 341 (536)
T KOG2734|consen 337 ALKVL 341 (536)
T ss_pred HHHHH
Confidence 55555
No 78
>PTZ00429 beta-adaptin; Provisional
Probab=97.46 E-value=0.018 Score=54.95 Aligned_cols=92 Identities=12% Similarity=0.146 Sum_probs=65.3
Q ss_pred CChHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCC
Q 025930 84 EDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDG 163 (246)
Q Consensus 84 ~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g 163 (246)
+|+.++..|++.|+++-. ++.... .++.+.+.+.+.++-+++.|+.++..+-. .++ +.+.+.|
T Consensus 117 ~Np~IRaLALRtLs~Ir~-~~i~e~-----l~~~lkk~L~D~~pYVRKtAalai~Kly~--------~~p---elv~~~~ 179 (746)
T PTZ00429 117 SSPVVRALAVRTMMCIRV-SSVLEY-----TLEPLRRAVADPDPYVRKTAAMGLGKLFH--------DDM---QLFYQQD 179 (746)
T ss_pred CCHHHHHHHHHHHHcCCc-HHHHHH-----HHHHHHHHhcCCCHHHHHHHHHHHHHHHh--------hCc---ccccccc
Confidence 356666555555554422 222222 24567777788899999999999998763 122 2334567
Q ss_pred ChHHHHHcccCCChhHHHHHHHHHHHhcc
Q 025930 164 ALPWIVQNSNNEASPIRRHIELALCHLAQ 192 (246)
Q Consensus 164 ~i~~Lv~ll~~~~~~v~~~a~~aL~~La~ 192 (246)
.++.|..++.+.++.|..+|+.+|..+..
T Consensus 180 ~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~ 208 (746)
T PTZ00429 180 FKKDLVELLNDNNPVVASNAAAIVCEVND 208 (746)
T ss_pred hHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 88999999999999999999999999975
No 79
>PTZ00429 beta-adaptin; Provisional
Probab=97.44 E-value=0.006 Score=58.11 Aligned_cols=179 Identities=11% Similarity=0.074 Sum_probs=112.1
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHHHH
Q 025930 31 LTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLR 110 (246)
Q Consensus 31 i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~ 110 (246)
++++.+.+.+. +|.+++.|+.++.++-..+. +.+.+.|.++.|..++.+ .|+.+..+|+.+|..+....... .-.
T Consensus 142 ~~~lkk~L~D~-~pYVRKtAalai~Kly~~~p--elv~~~~~~~~L~~LL~D-~dp~Vv~nAl~aL~eI~~~~~~~-l~l 216 (746)
T PTZ00429 142 LEPLRRAVADP-DPYVRKTAAMGLGKLFHDDM--QLFYQQDFKKDLVELLND-NNPVVASNAAAIVCEVNDYGSEK-IES 216 (746)
T ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHHhhCc--ccccccchHHHHHHHhcC-CCccHHHHHHHHHHHHHHhCchh-hHH
Confidence 45556666664 78888888888888854422 234455667778887776 67888888888888887332111 111
Q ss_pred hcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHh
Q 025930 111 GEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHL 190 (246)
Q Consensus 111 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~L 190 (246)
..+.+..++..+..-++..+...+.+|.... |.++... ...+..+...+++.++.|...|++++.++
T Consensus 217 ~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~--------P~~~~e~-----~~il~~l~~~Lq~~N~AVVl~Aik~il~l 283 (746)
T PTZ00429 217 SNEWVNRLVYHLPECNEWGQLYILELLAAQR--------PSDKESA-----ETLLTRVLPRMSHQNPAVVMGAIKVVANL 283 (746)
T ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHhcC--------CCCcHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 2334555666666666777777777775433 1211111 24577777888888999999999999999
Q ss_pred ccC--chhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHc
Q 025930 191 AQH--EVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLT 230 (246)
Q Consensus 191 a~~--~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~ 230 (246)
... ++..+... ......|+.+.. ++.+++..+.+.+.
T Consensus 284 ~~~~~~~~~~~~~-~rl~~pLv~L~s--s~~eiqyvaLr~I~ 322 (746)
T PTZ00429 284 ASRCSQELIERCT-VRVNTALLTLSR--RDAETQYIVCKNIH 322 (746)
T ss_pred cCcCCHHHHHHHH-HHHHHHHHHhhC--CCccHHHHHHHHHH
Confidence 764 22211111 123356666643 44567777776664
No 80
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.39 E-value=0.014 Score=50.41 Aligned_cols=152 Identities=24% Similarity=0.270 Sum_probs=91.5
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHHHH
Q 025930 31 LTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLR 110 (246)
Q Consensus 31 i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~ 110 (246)
++.+...+.+. ++.++..|+.+|+.+-... .++.++..+....+..++..+.++|..+-.-.
T Consensus 76 v~~l~~~l~d~-~~~vr~~a~~aLg~~~~~~----------a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~------- 137 (335)
T COG1413 76 VPLLRELLSDE-DPRVRDAAADALGELGDPE----------AVPPLVELLENDENEGVRAAAARALGKLGDER------- 137 (335)
T ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHccCChh----------HHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh-------
Confidence 55555666554 4555555555555554443 46677777775456778888888887763221
Q ss_pred hcCCHHHHHHHhcCCCH------------HHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChh
Q 025930 111 GEGGIKALLGMVRCGHP------------DVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASP 178 (246)
Q Consensus 111 ~~g~i~~L~~ll~~~~~------------~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~ 178 (246)
.+.+++..+..+.. .++..++..+..+- ....++.+...+...+..
T Consensus 138 ---a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~-------------------~~~~~~~l~~~l~~~~~~ 195 (335)
T COG1413 138 ---ALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELG-------------------DPEAIPLLIELLEDEDAD 195 (335)
T ss_pred ---hhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcC-------------------ChhhhHHHHHHHhCchHH
Confidence 26667777765442 23444444444443 235688899999988899
Q ss_pred HHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 025930 179 IRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTS 231 (246)
Q Consensus 179 v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~ 231 (246)
+|..+..+|..+.... ....+.+...+. .....++..+..+|..
T Consensus 196 vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~-~~~~~vr~~~~~~l~~ 239 (335)
T COG1413 196 VRRAAASALGQLGSEN--------VEAADLLVKALS-DESLEVRKAALLALGE 239 (335)
T ss_pred HHHHHHHHHHHhhcch--------hhHHHHHHHHhc-CCCHHHHHHHHHHhcc
Confidence 9999999999887754 123334444443 3334445555555543
No 81
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.37 E-value=0.0095 Score=45.58 Aligned_cols=131 Identities=11% Similarity=0.141 Sum_probs=93.1
Q ss_pred HHHHHhcCcHHHHHHHHhcCCC-----hHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhcC--CCHHHHHHHHHH
Q 025930 64 QELIMTQGGIGLLSTTAANAED-----PQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRC--GHPDVLAQVARG 136 (246)
Q Consensus 64 ~~~i~~~g~i~~L~~ll~~~~~-----~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~~--~~~~~~~~a~~~ 136 (246)
...++..||+..|+.++.++.. .+....++.+...|-......=...+...|..++..... .+..+.+.|...
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI 83 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI 83 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence 4567888999999999998653 356667788887776433211123333445566666653 268899999999
Q ss_pred HHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhcc--CchhHHHHHh
Q 025930 137 IANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQ--HEVNAKDMIS 202 (246)
Q Consensus 137 L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~--~~~~~~~i~~ 202 (246)
|-+++. .++...+.+.++=-++.|+..++..+++++.++...+-.|-. +++.|+.+.+
T Consensus 84 LEs~Vl--------~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i~~ 143 (160)
T PF11841_consen 84 LESIVL--------NSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEIAE 143 (160)
T ss_pred HHHHHh--------CCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 999985 345656666666669999999999999999999988888843 4455555543
No 82
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.37 E-value=0.0069 Score=58.32 Aligned_cols=157 Identities=15% Similarity=0.084 Sum_probs=121.9
Q ss_pred HhCCHHHHHHHhcCCCCHHHHHHHHHHHHHh-cCCcchHHHHHhcCcHHHHHHHHhcC--CChHHHHHHHHHHHHhh-CC
Q 025930 27 EAGGLTSLLMLLGSSEDETIHRVAAGAIANL-AMNETNQELIMTQGGIGLLSTTAANA--EDPQTLRMVAGAIANLC-GN 102 (246)
Q Consensus 27 ~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~l-a~~~~~~~~i~~~g~i~~L~~ll~~~--~~~~~~~~a~~aL~~L~-~~ 102 (246)
.-|+.|-++++|+++ -.+++-.-+.+-+.+ +.|+..+..+++.+|-..++..+... -+++-+..|+..|.-++ +.
T Consensus 510 sVGIFPYVLKLLQS~-a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf 588 (1387)
T KOG1517|consen 510 SVGIFPYVLKLLQSS-ARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNF 588 (1387)
T ss_pred ccchHHHHHHHhccc-hHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHccc
Confidence 458999999999997 455555444444454 88899999999999988888777652 24577778999999998 55
Q ss_pred chhHHHHHhcCCHHHHHHHhcCC-CHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHH
Q 025930 103 DKLQLKLRGEGGIKALLGMVRCG-HPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRR 181 (246)
Q Consensus 103 ~~~~~~l~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~ 181 (246)
+-.++...+.+.+..++..|.++ .+-+++=++-.|..|=. +.++.|=.=...++.+.|..++.++-++||.
T Consensus 589 ~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~--------d~~~Arw~G~r~~AhekL~~~LsD~vpEVRa 660 (1387)
T KOG1517|consen 589 KLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWE--------DYDEARWSGRRDNAHEKLILLLSDPVPEVRA 660 (1387)
T ss_pred chhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhh--------hcchhhhccccccHHHHHHHHhcCccHHHHH
Confidence 77788888999999999999875 46667777777776652 3345554445678899999999999999999
Q ss_pred HHHHHHHHhcc
Q 025930 182 HIELALCHLAQ 192 (246)
Q Consensus 182 ~a~~aL~~La~ 192 (246)
.|+.||..+-.
T Consensus 661 AAVFALgtfl~ 671 (1387)
T KOG1517|consen 661 AAVFALGTFLS 671 (1387)
T ss_pred HHHHHHHHHhc
Confidence 99999999854
No 83
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.34 E-value=0.0027 Score=51.71 Aligned_cols=153 Identities=12% Similarity=0.066 Sum_probs=91.6
Q ss_pred CCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchH-HHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHH
Q 025930 29 GGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQ-ELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQL 107 (246)
Q Consensus 29 g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~-~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~ 107 (246)
..+..++..+.+. ...+...|+.++..++..-... ... -...+|.|+..+.+ ....+++.|..+|..++.+-....
T Consensus 53 ~~~~~i~~~l~d~-Rs~v~~~A~~~l~~l~~~l~~~~~~~-~~~~l~~Ll~~~~~-~~~~i~~~a~~~L~~i~~~~~~~~ 129 (228)
T PF12348_consen 53 QLLDAIIKQLSDL-RSKVSKTACQLLSDLARQLGSHFEPY-ADILLPPLLKKLGD-SKKFIREAANNALDAIIESCSYSP 129 (228)
T ss_dssp ---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHH-HHHHHHHHHHGGG----HHHHHHHHHHHHHHHTTS-H--
T ss_pred HhHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHhHhHHHH-HHHHHHHHHHHHcc-ccHHHHHHHHHHHHHHHHHCCcHH
Confidence 4455666666553 4557788999999998663222 222 12357777777777 457788899999999986544222
Q ss_pred HHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHH
Q 025930 108 KLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELAL 187 (246)
Q Consensus 108 ~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL 187 (246)
.+ ..+.+.....++++.++..++..+..+...-+ ...+.......-...++.+...+.+.++++|..|-.++
T Consensus 130 ~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~----~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~ 201 (228)
T PF12348_consen 130 KI----LLEILSQGLKSKNPQVREECAEWLAIILEKWG----SDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECL 201 (228)
T ss_dssp HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT---------GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHH
T ss_pred HH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcc----chHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 22 14566667788999999999999988764210 00011111111134678889999999999999999999
Q ss_pred HHhcc
Q 025930 188 CHLAQ 192 (246)
Q Consensus 188 ~~La~ 192 (246)
+.+..
T Consensus 202 ~~l~~ 206 (228)
T PF12348_consen 202 WALYS 206 (228)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99965
No 84
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.34 E-value=0.003 Score=58.08 Aligned_cols=172 Identities=15% Similarity=0.148 Sum_probs=120.8
Q ss_pred CCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchH--HHHHhc---CcHHHHHHHHhcCCChHHHHHHHHHHHHhh--C
Q 025930 29 GGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQ--ELIMTQ---GGIGLLSTTAANAEDPQTLRMVAGAIANLC--G 101 (246)
Q Consensus 29 g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~--~~i~~~---g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~--~ 101 (246)
.++|.|.++|.++ |....+.|..+|..++.|.... ..+... -.+|.++...++ .++.++..|.+++..+. .
T Consensus 128 elLp~L~~~L~s~-d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h-~spkiRs~A~~cvNq~i~~~ 205 (885)
T KOG2023|consen 128 ELLPQLCELLDSP-DYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKH-PSPKIRSHAVGCVNQFIIIQ 205 (885)
T ss_pred hHHHHHHHHhcCC-cccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhC-CChhHHHHHHhhhhheeecC
Confidence 3589999999986 6667888999999999883221 111110 137788888888 57999999998887765 2
Q ss_pred CchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhh-HHHH--hCCChHHHHHcccCCChh
Q 025930 102 NDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGR-SLLI--DDGALPWIVQNSNNEASP 178 (246)
Q Consensus 102 ~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~-~~l~--~~g~i~~Lv~ll~~~~~~ 178 (246)
....-.++-. .+..+..+...+++++++++++++.-|-. .| +.+. -.++++.+++.-+..+..
T Consensus 206 ~qal~~~iD~--Fle~lFalanD~~~eVRk~vC~alv~Lle------------vr~dkl~phl~~IveyML~~tqd~dE~ 271 (885)
T KOG2023|consen 206 TQALYVHIDK--FLEILFALANDEDPEVRKNVCRALVFLLE------------VRPDKLVPHLDNIVEYMLQRTQDVDEN 271 (885)
T ss_pred cHHHHHHHHH--HHHHHHHHccCCCHHHHHHHHHHHHHHHH------------hcHHhcccchHHHHHHHHHHccCcchh
Confidence 2222222222 36667777778899999999999998872 11 1121 135788888888989999
Q ss_pred HHHHHHHHHHHhccCchhHHHHHh--CCcHHHHHHHHhcC
Q 025930 179 IRRHIELALCHLAQHEVNAKDMIS--GGALWELVRISRDC 216 (246)
Q Consensus 179 v~~~a~~aL~~La~~~~~~~~i~~--~g~i~~L~~ll~~~ 216 (246)
|-..||.....+|..+-.+..+.. ...+|.|++=+..+
T Consensus 272 VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ys 311 (885)
T KOG2023|consen 272 VALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYS 311 (885)
T ss_pred HHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccc
Confidence 999999999999998855555543 46677776665543
No 85
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.29 E-value=0.00067 Score=42.30 Aligned_cols=55 Identities=22% Similarity=0.118 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 025930 44 ETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANL 99 (246)
Q Consensus 44 ~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L 99 (246)
|.++..|+.+|++++........-.....++.|+.++.+ +++.++..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d-~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQD-DDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTS-SSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHhcC
Confidence 457889999999998774333333445689999999987 5679999999999875
No 86
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.22 E-value=0.00075 Score=42.05 Aligned_cols=55 Identities=22% Similarity=0.181 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 025930 86 PQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANF 140 (246)
Q Consensus 86 ~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL 140 (246)
+.++..|+++|.+++........-....+++.|+.+|.+++++++..|+.+|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 3578899999999885544443335556899999999999999999999999875
No 87
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.19 E-value=0.0095 Score=53.67 Aligned_cols=173 Identities=16% Similarity=0.118 Sum_probs=121.5
Q ss_pred hHHhHhhccccccHHHHHHhCCHHHHHHHh---------cCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHH
Q 025930 9 ISVKSEDIRAQSNQEKIVEAGGLTSLLMLL---------GSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLST 78 (246)
Q Consensus 9 ~~~~~~~~~~~~~~~~i~~~g~i~~Li~ll---------~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ 78 (246)
+..++-++.++.+-+.+....++..|+.+- ....++.+...|.++|+|+... +..|..+++.|+.+.++.
T Consensus 2 L~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~ 81 (446)
T PF10165_consen 2 LETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCE 81 (446)
T ss_pred HHHHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHH
Confidence 455677778888889999999999999887 4455778889999999999766 789999999999999999
Q ss_pred HHhcC----CChHHHHHHHHHHHHhh-CCchhHHHHH-hcCCHHHHHHHhcC-----------------CCHHHHHHHHH
Q 025930 79 TAANA----EDPQTLRMVAGAIANLC-GNDKLQLKLR-GEGGIKALLGMVRC-----------------GHPDVLAQVAR 135 (246)
Q Consensus 79 ll~~~----~~~~~~~~a~~aL~~L~-~~~~~~~~l~-~~g~i~~L~~ll~~-----------------~~~~~~~~a~~ 135 (246)
.++.. .+.++.-...+.|+-++ ...+.+..++ +.+++..+...+.. .+.+....++.
T Consensus 82 ~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLK 161 (446)
T PF10165_consen 82 RLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILK 161 (446)
T ss_pred HHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHH
Confidence 99875 14667767888888777 5666776766 45788877776621 13445677889
Q ss_pred HHHHhhcccccccccCChhhhHHHHhCCChHHHHHccc-------C--CChhHHHHHHHHHHHh
Q 025930 136 GIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSN-------N--EASPIRRHIELALCHL 190 (246)
Q Consensus 136 ~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~-------~--~~~~v~~~a~~aL~~L 190 (246)
++.|+...- +.... =.....++.++.++. . +......++..+|.++
T Consensus 162 llFNit~~~--------~~~~~-~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nl 216 (446)
T PF10165_consen 162 LLFNITLHY--------PKSVP-EEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNL 216 (446)
T ss_pred HHHHhhhcc--------Ccccc-hhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCC
Confidence 999987631 11100 011233444444322 1 1345677788888887
No 88
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.15 E-value=0.0022 Score=57.56 Aligned_cols=135 Identities=10% Similarity=0.022 Sum_probs=107.8
Q ss_pred HHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh-CCchhHHHHHhcCCHHHHHHHhcCCCH
Q 025930 50 AAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC-GNDKLQLKLRGEGGIKALLGMVRCGHP 127 (246)
Q Consensus 50 a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~-~~~~~~~~l~~~g~i~~L~~ll~~~~~ 127 (246)
++..|-+++.. .-.|..+.+...+++|++++++ ++-.+..-+..+++|+. -.+..+..+.+.|.+..++.++.++|.
T Consensus 409 ~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~-Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDd 487 (743)
T COG5369 409 IVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSN-PEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDD 487 (743)
T ss_pred HHHHHHHhhHHHHHHHhhccccchHHHHHHHhcC-ccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchh
Confidence 34444455554 5577788888889999999998 44555556788888887 566778889999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhcc
Q 025930 128 DVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQ 192 (246)
Q Consensus 128 ~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~ 192 (246)
.++.+..+.++.+... ...+-+-.+...-++..++.+..++.-.++..+...|.|+..
T Consensus 488 aLqans~wvlrHlmyn-------cq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc 545 (743)
T COG5369 488 ALQANSEWVLRHLMYN-------CQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTC 545 (743)
T ss_pred hhhhcchhhhhhhhhc-------CcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhccc
Confidence 9999999999998853 223444556666779999999999999999999999999966
No 89
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.12 E-value=0.019 Score=48.70 Aligned_cols=183 Identities=11% Similarity=0.041 Sum_probs=123.8
Q ss_pred hhHHhHhhccccccHHHHHHh-CCHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCCcchHHHHHh-cCcHHHHHHHHhcCC
Q 025930 8 TISVKSEDIRAQSNQEKIVEA-GGLTSLLMLLGSSE-DETIHRVAAGAIANLAMNETNQELIMT-QGGIGLLSTTAANAE 84 (246)
Q Consensus 8 ~~~~~~~~~~~~~~~~~i~~~-g~i~~Li~ll~~~~-~~~~~~~a~~~L~~la~~~~~~~~i~~-~g~i~~L~~ll~~~~ 84 (246)
.++.+.++++..++|..+-.+ -+-..++..++..- +-.+|-+..-+++-++.+++..+.+-+ ..-+.-++++.++..
T Consensus 169 av~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dli~iVk~~~ 248 (432)
T COG5231 169 AVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDLIAIVKERA 248 (432)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347888999999999877644 45677888887742 356788899999999999877755543 345667788888755
Q ss_pred ChHHHHHHHHHHHHhhC-Cc-hhHHHHHhcCCHHHHHHHhcC---CCHHHHHHHH-------------HHHHH-------
Q 025930 85 DPQTLRMVAGAIANLCG-ND-KLQLKLRGEGGIKALLGMVRC---GHPDVLAQVA-------------RGIAN------- 139 (246)
Q Consensus 85 ~~~~~~~a~~aL~~L~~-~~-~~~~~l~~~g~i~~L~~ll~~---~~~~~~~~a~-------------~~L~n------- 139 (246)
-+.+.+-+++++.|++. .+ .....+.-.|-+.+.+..|.. .|+++....- ..+-+
T Consensus 249 keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD~Y~~ELds 328 (432)
T COG5231 249 KEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFDNYLNELDS 328 (432)
T ss_pred HHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhh
Confidence 57788899999999985 32 233334444545556666642 2444432111 11100
Q ss_pred --hhccc-cc-ccc-------------------------------------------cCChhhhHHHHhCCChHHHHHcc
Q 025930 140 --FAKCE-SR-AST-------------------------------------------QGTKTGRSLLIDDGALPWIVQNS 172 (246)
Q Consensus 140 --L~~~~-~~-~~~-------------------------------------------~~~~~~~~~l~~~g~i~~Lv~ll 172 (246)
|++.+ +. +.. +..|+.+..+.+.|+=+.+..++
T Consensus 329 g~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~ 408 (432)
T COG5231 329 GRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLI 408 (432)
T ss_pred CcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHh
Confidence 11110 00 000 23489999999999999999999
Q ss_pred cCCChhHHHHHHHHHHHh
Q 025930 173 NNEASPIRRHIELALCHL 190 (246)
Q Consensus 173 ~~~~~~v~~~a~~aL~~L 190 (246)
.+++++++..|+.++..+
T Consensus 409 nh~d~~VkfeAl~a~q~~ 426 (432)
T COG5231 409 NHDDDDVKFEALQALQTC 426 (432)
T ss_pred cCCCchhhHHHHHHHHHH
Confidence 999999999999998765
No 90
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=97.08 E-value=0.0012 Score=48.01 Aligned_cols=69 Identities=25% Similarity=0.389 Sum_probs=59.5
Q ss_pred CHHHHHHHh-cCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHh
Q 025930 114 GIKALLGMV-RCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHL 190 (246)
Q Consensus 114 ~i~~L~~ll-~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~L 190 (246)
.++.|+++| .+.++....-|+.-+..++. ..|.+|..+.+.|+-+.+..++.++|++|++.|+.|+..+
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr--------~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVR--------HYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHH--------H-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHH--------HChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 588899999 46678888899999999985 3479999999999999999999999999999999998766
No 91
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.08 E-value=0.035 Score=48.75 Aligned_cols=161 Identities=17% Similarity=0.070 Sum_probs=112.3
Q ss_pred cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhcCC--CHHHHHHHHHHHH
Q 025930 61 ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCG--HPDVLAQVARGIA 138 (246)
Q Consensus 61 ~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~~~--~~~~~~~a~~~L~ 138 (246)
+..+..+.-....+-+..++-+ ++.+++..+.++++.+..+++.-+.+.+.++---++..|..+ ...=+++|...++
T Consensus 15 p~l~~~~~~~~~~~~i~~~lL~-~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR 93 (371)
T PF14664_consen 15 PTLKYDLVLSFFGERIQCMLLS-DSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIR 93 (371)
T ss_pred chhhhhhhHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHH
Confidence 4444443322233444334444 248999999999999999999999999988766666666533 3445789999998
Q ss_pred HhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhcc-CchhHHHHHhCCcHHHHHHHHhcCC
Q 025930 139 NFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQ-HEVNAKDMISGGALWELVRISRDCS 217 (246)
Q Consensus 139 nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~-~~~~~~~i~~~g~i~~L~~ll~~~~ 217 (246)
.+.... .+.+. ...|++..++.+....++..+..|..+|+.++. +| +.+.++||+..|++.+.++.
T Consensus 94 ~~l~~~---------~~~~~-~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P---~lv~~~gG~~~L~~~l~d~~ 160 (371)
T PF14664_consen 94 AFLEIK---------KGPKE-IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP---ELVAECGGIRVLLRALIDGS 160 (371)
T ss_pred HHHHhc---------CCccc-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH---HHHHHcCCHHHHHHHHHhcc
Confidence 877421 12221 245788999999999999999999999999998 44 45788999999999998755
Q ss_pred HHHHHHHHHHHH---ccChhHH
Q 025930 218 REDIRTLAHRTL---TSSPAFQ 236 (246)
Q Consensus 218 ~~~~~~~A~~~L---~~~~~~~ 236 (246)
.+ ..+....++ -+.|..+
T Consensus 161 ~~-~~~~l~~~lL~lLd~p~tR 181 (371)
T PF14664_consen 161 FS-ISESLLDTLLYLLDSPRTR 181 (371)
T ss_pred Hh-HHHHHHHHHHHHhCCcchh
Confidence 44 444444433 3556554
No 92
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=97.00 E-value=0.0091 Score=45.93 Aligned_cols=145 Identities=19% Similarity=0.275 Sum_probs=95.6
Q ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHH-HHHHhcCCChHHHHHHHHHHHHhh-CCchhHH
Q 025930 31 LTSLLMLLGS-SEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLL-STTAANAEDPQTLRMVAGAIANLC-GNDKLQL 107 (246)
Q Consensus 31 i~~Li~ll~~-~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L-~~ll~~~~~~~~~~~a~~aL~~L~-~~~~~~~ 107 (246)
++.++..|.. ...+.++..+.-++..+- +..++.+.+ .+.-+ -..+.+. +.+-...+..++..+- ..++...
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~~~--~~~~~i~~~~~~~-~~d~~i~~~~~l~~lfp~~~dv~~ 79 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEFKE--KISDFIESLLDEG-EMDSLIIAFSALTALFPGPPDVGS 79 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHHHH--HHHHHHHHHHCCH-HCCHHHHHHHHHHHHCTTTHHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHHHH--HHHHHHHHHHccc-cchhHHHHHHHHHHHhCCCHHHHH
Confidence 4455666654 334567888888888883 434444332 23333 3344432 2234446788888777 5667766
Q ss_pred HHH-hcCCHHHHHHHhc--CCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHccc-CCChh-HHHH
Q 025930 108 KLR-GEGGIKALLGMVR--CGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSN-NEASP-IRRH 182 (246)
Q Consensus 108 ~l~-~~g~i~~L~~ll~--~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~-~~~~~-v~~~ 182 (246)
.+. ..|.++.++.++. +++......++.+|..-| .+...|..+.++ ++++|-.+.+ ++++. +|..
T Consensus 80 ~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc---------~d~~~r~~I~~~-~~~~L~~~~~~~~~~~~ir~~ 149 (157)
T PF11701_consen 80 ELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAAC---------IDKSCRTFISKN-YVSWLKELYKNSKDDSEIRVL 149 (157)
T ss_dssp HHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHT---------TSHHHHHCCHHH-CHHHHHHHTTTCC-HH-CHHH
T ss_pred HHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHH---------ccHHHHHHHHHH-HHHHHHHHHccccchHHHHHH
Confidence 665 7888999999998 778888888888888777 345666666655 6999999995 44565 7888
Q ss_pred HHHHHHHh
Q 025930 183 IELALCHL 190 (246)
Q Consensus 183 a~~aL~~L 190 (246)
|+..|+.|
T Consensus 150 A~v~L~Kl 157 (157)
T PF11701_consen 150 AAVGLCKL 157 (157)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhcC
Confidence 88887653
No 93
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.00 E-value=0.012 Score=53.52 Aligned_cols=181 Identities=15% Similarity=0.091 Sum_probs=116.1
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHHHH
Q 025930 31 LTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLR 110 (246)
Q Consensus 31 i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~ 110 (246)
+|+++.-+... ....+..++..++.++.....+-.......+|.+.+.+.+ .++++++.+..+|..+++..+|....
T Consensus 256 lpsll~~l~~~-kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~D-T~~evr~a~~~~l~~~~svidN~dI~- 332 (569)
T KOG1242|consen 256 LPSLLGSLLEA-KWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWD-TKPEVRKAGIETLLKFGSVIDNPDIQ- 332 (569)
T ss_pred hhhhHHHHHHH-hhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHcc-CCHHHHHHHHHHHHHHHHhhccHHHH-
Confidence 44555444442 3445777889999888887777777777889999999998 68999999999999999555554421
Q ss_pred hcCCHHHHHHHhcCCCHHHHHHHHHHHHH--hhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHH
Q 025930 111 GEGGIKALLGMVRCGHPDVLAQVARGIAN--FAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALC 188 (246)
Q Consensus 111 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~n--L~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~ 188 (246)
-.+|.|++.+.++...+. .+...|.. +..+- +.... .-.+|.+.+-+...+..+++.++..++
T Consensus 333 --~~ip~Lld~l~dp~~~~~-e~~~~L~~ttFV~~V-------~~psL-----almvpiL~R~l~eRst~~kr~t~~Iid 397 (569)
T KOG1242|consen 333 --KIIPTLLDALADPSCYTP-ECLDSLGATTFVAEV-------DAPSL-----ALMVPILKRGLAERSTSIKRKTAIIID 397 (569)
T ss_pred --HHHHHHHHHhcCcccchH-HHHHhhcceeeeeee-------cchhH-----HHHHHHHHHHHhhccchhhhhHHHHHH
Confidence 237889999987642322 22222221 11110 00000 112445555555558889999999999
Q ss_pred HhccCchhHHHHHh--CCcHHHHHHHHhcCCHHHHHHHHHHHHc
Q 025930 189 HLAQHEVNAKDMIS--GGALWELVRISRDCSREDIRTLAHRTLT 230 (246)
Q Consensus 189 ~La~~~~~~~~i~~--~g~i~~L~~ll~~~~~~~~~~~A~~~L~ 230 (246)
|+|.--++.+.+.. ...+|.|-+.+... -+++|..|.++|.
T Consensus 398 Nm~~LveDp~~lapfl~~Llp~lk~~~~d~-~PEvR~vaarAL~ 440 (569)
T KOG1242|consen 398 NMCKLVEDPKDLAPFLPSLLPGLKENLDDA-VPEVRAVAARALG 440 (569)
T ss_pred HHHHhhcCHHHHhhhHHHHhhHHHHHhcCC-ChhHHHHHHHHHH
Confidence 99983333333332 23555666666655 6788999999984
No 94
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=96.98 E-value=0.011 Score=55.28 Aligned_cols=152 Identities=16% Similarity=0.135 Sum_probs=106.1
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHH-HHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHHH
Q 025930 31 LTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIG-LLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKL 109 (246)
Q Consensus 31 i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~-~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l 109 (246)
+...++.|++. .+.++.+|+..++.++.--..+......|-+. +|.+-+.. +++++.-..++||+.+.+.....+..
T Consensus 801 ~stiL~rLnnk-sa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylge-eypEvLgsILgAikaI~nvigm~km~ 878 (1172)
T KOG0213|consen 801 CSTILWRLNNK-SAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGE-EYPEVLGSILGAIKAIVNVIGMTKMT 878 (1172)
T ss_pred HHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCc-ccHHHHHHHHHHHHHHHHhccccccC
Confidence 45567788875 77888889999998876643443222222333 23455555 67899888999998887554333322
Q ss_pred H-hcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHH
Q 025930 110 R-GEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALC 188 (246)
Q Consensus 110 ~-~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~ 188 (246)
- -.|.+|.|...|++.+..++++++..+.-+|... +.....|+.|. .---|+.+|+.++.++|.+|...++
T Consensus 879 pPi~dllPrltPILknrheKVqen~IdLvg~Iadrg-----pE~v~aREWMR---IcfeLlelLkahkK~iRRaa~nTfG 950 (1172)
T KOG0213|consen 879 PPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRG-----PEYVSAREWMR---ICFELLELLKAHKKEIRRAAVNTFG 950 (1172)
T ss_pred CChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcC-----cccCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 2 2467899999999999999999999999988521 12233455444 3446788999999999999998888
Q ss_pred Hhcc
Q 025930 189 HLAQ 192 (246)
Q Consensus 189 ~La~ 192 (246)
.++.
T Consensus 951 ~Iak 954 (1172)
T KOG0213|consen 951 YIAK 954 (1172)
T ss_pred HHHH
Confidence 8764
No 95
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.93 E-value=0.049 Score=44.51 Aligned_cols=144 Identities=11% Similarity=0.012 Sum_probs=101.8
Q ss_pred HHHHHHHhcCCcchHHHHHhcCcHHHHHHHHh----cCCChHHHHHHHHHHHHhh--CCchhHHHHHhcCCHHHHHHHhc
Q 025930 50 AAGAIANLAMNETNQELIMTQGGIGLLSTTAA----NAEDPQTLRMVAGAIANLC--GNDKLQLKLRGEGGIKALLGMVR 123 (246)
Q Consensus 50 a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~----~~~~~~~~~~a~~aL~~L~--~~~~~~~~l~~~g~i~~L~~ll~ 123 (246)
|...|--++.+++.|..+.+...--.|-..+. +.+++-++-.+++.+..|. .+.+.-..+...++||.+++.+.
T Consensus 99 aL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime 178 (293)
T KOG3036|consen 99 ALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIME 178 (293)
T ss_pred HHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHh
Confidence 33334445899999999998665444444443 3346778889999999998 45666677889999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHh--------CCChHHHH-HcccCCChhHHHHHHHHHHHhccCc
Q 025930 124 CGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLID--------DGALPWIV-QNSNNEASPIRRHIELALCHLAQHE 194 (246)
Q Consensus 124 ~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~--------~g~i~~Lv-~ll~~~~~~v~~~a~~aL~~La~~~ 194 (246)
.+++.-+.-|..++.-+-. ++.+-.-+.+ .-.+..++ ++.+.+++.+-+++.++..+|+.++
T Consensus 179 ~GSelSKtvA~fIlqKIll---------dD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp 249 (293)
T KOG3036|consen 179 SGSELSKTVATFILQKILL---------DDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP 249 (293)
T ss_pred cccHHHHHHHHHHHHHHhh---------ccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH
Confidence 9988777777777765542 2233222221 11233333 3556679999999999999999999
Q ss_pred hhHHHHHh
Q 025930 195 VNAKDMIS 202 (246)
Q Consensus 195 ~~~~~i~~ 202 (246)
..|..+.+
T Consensus 250 rar~aL~~ 257 (293)
T KOG3036|consen 250 RARAALRS 257 (293)
T ss_pred HHHHHHHh
Confidence 99888775
No 96
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.89 E-value=0.14 Score=41.96 Aligned_cols=144 Identities=15% Similarity=0.137 Sum_probs=102.6
Q ss_pred hhhHHhHhhccccccHHHHHHhCC---HHHHHH-HhcCCCCHHHHHHHHHHHHHhcCC--cchHHHHHhcCcHHHHHHHH
Q 025930 7 NTISVKSEDIRAQSNQEKIVEAGG---LTSLLM-LLGSSEDETIHRVAAGAIANLAMN--ETNQELIMTQGGIGLLSTTA 80 (246)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~i~~~g~---i~~Li~-ll~~~~~~~~~~~a~~~L~~la~~--~~~~~~i~~~g~i~~L~~ll 80 (246)
+.+.++.-.+.+++.|..+.++.+ +-+++. ..++...+..+-.+.++++.|.+. ++.-..+...+.||..+.++
T Consensus 98 naL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrim 177 (293)
T KOG3036|consen 98 NALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIM 177 (293)
T ss_pred HHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHH
Confidence 456667777999999999999877 444443 333444677777899999999766 44556667889999999999
Q ss_pred hcCCChHHHHHHHHHHHHhhCCchhHHHHH----hcCCHHHHHH-----HhcCCCHHHHHHHHHHHHHhhcccccccccC
Q 025930 81 ANAEDPQTLRMVAGAIANLCGNDKLQLKLR----GEGGIKALLG-----MVRCGHPDVLAQVARGIANFAKCESRASTQG 151 (246)
Q Consensus 81 ~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~----~~g~i~~L~~-----ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~ 151 (246)
..+ .+..+..|..++..+-.++..-..+. +.-.|..++. +.+.++..+.+.+++...+|+ +
T Consensus 178 e~G-SelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLs---------d 247 (293)
T KOG3036|consen 178 ESG-SELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLS---------D 247 (293)
T ss_pred hcc-cHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc---------C
Confidence 985 46667788888888876665543332 2223333322 334678899999999999999 5
Q ss_pred ChhhhHHHH
Q 025930 152 TKTGRSLLI 160 (246)
Q Consensus 152 ~~~~~~~l~ 160 (246)
++..|.++.
T Consensus 248 nprar~aL~ 256 (293)
T KOG3036|consen 248 NPRARAALR 256 (293)
T ss_pred CHHHHHHHH
Confidence 567776665
No 97
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=96.85 E-value=0.026 Score=44.82 Aligned_cols=118 Identities=16% Similarity=0.103 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHhhCCchhHHHHHhcC----------------CHHHHHHHhcC------CCHHHHHHHHHHHHHhhcccc
Q 025930 88 TLRMVAGAIANLCGNDKLQLKLRGEG----------------GIKALLGMVRC------GHPDVLAQVARGIANFAKCES 145 (246)
Q Consensus 88 ~~~~a~~aL~~L~~~~~~~~~l~~~g----------------~i~~L~~ll~~------~~~~~~~~a~~~L~nL~~~~~ 145 (246)
....++..|+|++..+.....+.+.+ .+..|++.+.. ...+-....+.+|.|++
T Consensus 11 ~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS---- 86 (192)
T PF04063_consen 11 LADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLS---- 86 (192)
T ss_pred hHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhc----
Confidence 45578889999998777777554332 45666766654 23456778999999999
Q ss_pred cccccCChhhhHHHHhCC--C--hHHHHHcccCCChhHHHHHHHHHHHhccCchhHHHHHhC---CcHHHHHHHHh
Q 025930 146 RASTQGTKTGRSLLIDDG--A--LPWIVQNSNNEASPIRRHIELALCHLAQHEVNAKDMISG---GALWELVRISR 214 (246)
Q Consensus 146 ~~~~~~~~~~~~~l~~~g--~--i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~---g~i~~L~~ll~ 214 (246)
..+++|+.+.+.. . +..|+......+..-|.-++.+|.|+|++.+....+... +.++.|+--+.
T Consensus 87 -----~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 87 -----QLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred -----CCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 4579999999643 3 677777777777777777899999999988887777763 56666665554
No 98
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.82 E-value=0.0014 Score=47.58 Aligned_cols=69 Identities=25% Similarity=0.294 Sum_probs=57.2
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh
Q 025930 31 LTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC 100 (246)
Q Consensus 31 i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~ 100 (246)
+..|+.+|..++|+.+.-.||.=|+.+... |..|..+-+.|+=..+..++.+ +|++++..|+.++..+.
T Consensus 45 lk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h-~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 45 LKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNH-EDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS--SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcC-CCHHHHHHHHHHHHHHH
Confidence 899999997766888777899999999866 7777777788888888899998 78999999999998764
No 99
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=96.77 E-value=0.086 Score=45.45 Aligned_cols=152 Identities=25% Similarity=0.314 Sum_probs=109.6
Q ss_pred CCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHH
Q 025930 29 GGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLK 108 (246)
Q Consensus 29 g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~ 108 (246)
-.++.++..+.+. ++.++..|+..++.+...+ .++.+..++.+ .++.++..+..+|..+-.
T Consensus 43 ~~~~~~~~~l~~~-~~~vr~~aa~~l~~~~~~~----------av~~l~~~l~d-~~~~vr~~a~~aLg~~~~------- 103 (335)
T COG1413 43 EAADELLKLLEDE-DLLVRLSAAVALGELGSEE----------AVPLLRELLSD-EDPRVRDAAADALGELGD------- 103 (335)
T ss_pred hhHHHHHHHHcCC-CHHHHHHHHHHHhhhchHH----------HHHHHHHHhcC-CCHHHHHHHHHHHHccCC-------
Confidence 4688899999886 7888888888876665554 68888899998 578889888887776522
Q ss_pred HHhcCCHHHHHHHhc-CCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCCh----------
Q 025930 109 LRGEGGIKALLGMVR-CGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEAS---------- 177 (246)
Q Consensus 109 l~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~---------- 177 (246)
...++.++..+. +++..++..++.+|..+-. ...+..++..+.+...
T Consensus 104 ---~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~-------------------~~a~~~l~~~l~~~~~~~a~~~~~~~ 161 (335)
T COG1413 104 ---PEAVPPLVELLENDENEGVRAAAARALGKLGD-------------------ERALDPLLEALQDEDSGSAAAALDAA 161 (335)
T ss_pred ---hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc-------------------hhhhHHHHHHhccchhhhhhhhccch
Confidence 125788999998 5889999999999998873 2347777777766552
Q ss_pred --hHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccC
Q 025930 178 --PIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSS 232 (246)
Q Consensus 178 --~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~ 232 (246)
.++..+..+|..+.. ...++.+...+.+ ....++..|..+|..+
T Consensus 162 ~~~~r~~a~~~l~~~~~----------~~~~~~l~~~l~~-~~~~vr~~Aa~aL~~~ 207 (335)
T COG1413 162 LLDVRAAAAEALGELGD----------PEAIPLLIELLED-EDADVRRAAASALGQL 207 (335)
T ss_pred HHHHHHHHHHHHHHcCC----------hhhhHHHHHHHhC-chHHHHHHHHHHHHHh
Confidence 345555555444433 3366778888874 4457888888888653
No 100
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.70 E-value=0.078 Score=45.18 Aligned_cols=169 Identities=14% Similarity=0.145 Sum_probs=110.9
Q ss_pred CCHHHHH-HHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh--CCchh
Q 025930 29 GGLTSLL-MLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC--GNDKL 105 (246)
Q Consensus 29 g~i~~Li-~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~--~~~~~ 105 (246)
+.++.|| ..+++. ++.+++.|..+|+-++.-+. .+. ...++.+...++. +++.++..|+.++..+. .....
T Consensus 26 ~ll~~lI~P~v~~~-~~~vR~~al~cLGl~~Lld~---~~a-~~~l~l~~~~~~~-~~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 26 SLLDSLILPAVQSS-DPAVRELALKCLGLCCLLDK---ELA-KEHLPLFLQALQK-DDEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhCh---HHH-HHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHcCchh
Confidence 6777776 667775 78999999999999986653 111 1236778887866 47899999999999987 22222
Q ss_pred HHH-------HHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCC---
Q 025930 106 QLK-------LRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNE--- 175 (246)
Q Consensus 106 ~~~-------l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~--- 175 (246)
... ......++.+.+.+.+.+++++..++..++-|-.+. ...+ ...++..|+-+..++
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~------~i~~------~~~vL~~Lll~yF~p~t~ 167 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSG------RISD------PPKVLSRLLLLYFNPSTE 167 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC------CCCc------HHHHHHHHHHHHcCcccC
Confidence 111 223456778888888889999999999998876431 0011 123444444443332
Q ss_pred -ChhHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhc
Q 025930 176 -ASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRD 215 (246)
Q Consensus 176 -~~~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~ 215 (246)
++.+|..-...+-..|+.....+..+....++.+..+...
T Consensus 168 ~~~~LrQ~L~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 168 DNQRLRQCLSVFFPVYASSSPENQERLAEAFLPTLRTLSNA 208 (298)
T ss_pred CcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhC
Confidence 4566666666666667755544666666777777776654
No 101
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.67 E-value=0.09 Score=47.79 Aligned_cols=155 Identities=18% Similarity=0.153 Sum_probs=105.1
Q ss_pred HhCCHHHHHHHhcCCCCH-HHHHHHHHH---HHHhcCCcchHHHHHhcC-cHHHHHHHHhcCCChHHHHHHHHHHHHhhC
Q 025930 27 EAGGLTSLLMLLGSSEDE-TIHRVAAGA---IANLAMNETNQELIMTQG-GIGLLSTTAANAEDPQTLRMVAGAIANLCG 101 (246)
Q Consensus 27 ~~g~i~~Li~ll~~~~~~-~~~~~a~~~---L~~la~~~~~~~~i~~~g-~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~ 101 (246)
-.|++..++.++.+. ++ ..+..+..+ +..+...+..+.. ++.| .+..+...+++ +..+.+..++.-+..|-+
T Consensus 289 ~s~il~~iLpc~s~~-e~~~i~~~a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~-~~~~tri~~L~Wi~~l~~ 365 (675)
T KOG0212|consen 289 LSGILTAILPCLSDT-EEMSIKEYAQMVNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSD-DREETRIAVLNWIILLYH 365 (675)
T ss_pred hhhhhhhcccCCCCC-ccccHHHHHHHHHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhc-chHHHHHHHHHHHHHHHh
Confidence 467777888887664 33 233332222 3333333333333 3333 35566667776 567888888888888888
Q ss_pred CchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHH
Q 025930 102 NDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRR 181 (246)
Q Consensus 102 ~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~ 181 (246)
...++-........+.|++-|++.+.++...+...+.++|..+ .++..+ .++..|.++...+..-+..
T Consensus 366 ~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~------~~~~~~------~fl~sLL~~f~e~~~~l~~ 433 (675)
T KOG0212|consen 366 KAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSS------NSPNLR------KFLLSLLEMFKEDTKLLEV 433 (675)
T ss_pred hCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCc------ccccHH------HHHHHHHHHHhhhhHHHHh
Confidence 8888777778889999999999999999999999999999642 222221 2345566666777777778
Q ss_pred HHHHHHHHhcc--Cchh
Q 025930 182 HIELALCHLAQ--HEVN 196 (246)
Q Consensus 182 ~a~~aL~~La~--~~~~ 196 (246)
.+...+..||. +++.
T Consensus 434 Rg~lIIRqlC~lL~aE~ 450 (675)
T KOG0212|consen 434 RGNLIIRQLCLLLNAER 450 (675)
T ss_pred hhhHHHHHHHHHhCHHH
Confidence 88888888886 4444
No 102
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=96.63 E-value=0.23 Score=42.98 Aligned_cols=209 Identities=13% Similarity=0.151 Sum_probs=143.5
Q ss_pred HHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcC-Cc-chHHHHHh-cCc-HHHHHHHHhc---C-CC--------hH
Q 025930 24 KIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAM-NE-TNQELIMT-QGG-IGLLSTTAAN---A-ED--------PQ 87 (246)
Q Consensus 24 ~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~-~~-~~~~~i~~-~g~-i~~L~~ll~~---~-~~--------~~ 87 (246)
.|.+.. ++.+-..|++. .+.+...+.+.|.++.. +. ...+.+.. -+. .+.+..++.. . .+ +.
T Consensus 52 ~iL~~~-~k~lyr~L~~~-~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~s 129 (330)
T PF11707_consen 52 SILQNH-LKLLYRSLSSS-KPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPS 129 (330)
T ss_pred HHHHHH-HHHHHHHhCcC-cHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcC
Confidence 344343 88888889886 56677789999999976 53 44444443 333 3344445421 1 11 16
Q ss_pred HHHHHHHHHHHhh--CCchhHHHHH-hcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCC
Q 025930 88 TLRMVAGAIANLC--GNDKLQLKLR-GEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGA 164 (246)
Q Consensus 88 ~~~~a~~aL~~L~--~~~~~~~~l~-~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~ 164 (246)
++......+..+. .++..+..+. +.+.+..+.+-|..++.++....+.+|..-...+. .-....|..+.+...
T Consensus 130 iR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~----~v~r~~K~~~fn~~~ 205 (330)
T PF11707_consen 130 IRTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDS----SVSRSTKCKLFNEWT 205 (330)
T ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCC----CCChhhhhhhcCHHH
Confidence 7766666665554 5677777766 45578888899989899999999999996443221 122566777788889
Q ss_pred hHHHHHcccCCCh----hHHHHHHHHHHHhccCchhHHHHH------------------------hCCcHHHHHHHHhcC
Q 025930 165 LPWIVQNSNNEAS----PIRRHIELALCHLAQHEVNAKDMI------------------------SGGALWELVRISRDC 216 (246)
Q Consensus 165 i~~Lv~ll~~~~~----~v~~~a~~aL~~La~~~~~~~~i~------------------------~~g~i~~L~~ll~~~ 216 (246)
+..|+.+....++ .+...+-..|..+|.++..--.+- ..+.+..++..++..
T Consensus 206 L~~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~p~~Gv~f~d~~~~~~~~~~~~~~~~~~~~~~~~Nk~L~~ll~~lkp~ 285 (330)
T PF11707_consen 206 LSQLASLYSRDGEDEKSSVADLVHEFLLALCTDPKHGVCFPDNGWYPRESDSGVPVTINNKSFKINNKLLLNLLKKLKPW 285 (330)
T ss_pred HHHHHHHhcccCCcccchHHHHHHHHHHHHhcCCCcccccCCCCcCcCcccccccccccCCCCCcccHHHHHHHHHCCCC
Confidence 9999999988888 899999999999987665422222 124455566666667
Q ss_pred CHHHHHHHHHHHHccChhHHHH
Q 025930 217 SREDIRTLAHRTLTSSPAFQAE 238 (246)
Q Consensus 217 ~~~~~~~~A~~~L~~~~~~~~e 238 (246)
++..+++...+.+..-|++-+.
T Consensus 286 e~~~q~~Lvl~Il~~~PeLva~ 307 (330)
T PF11707_consen 286 EDDRQQELVLKILKACPELVAP 307 (330)
T ss_pred ccHHHHHHHHHHHHHChHHHHH
Confidence 7788899999999998887653
No 103
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=96.48 E-value=0.052 Score=43.13 Aligned_cols=119 Identities=15% Similarity=0.116 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHhcC----------------cHHHHHHHHhc-----CCChHHHHHHHHHHHHhhCCch
Q 025930 46 IHRVAAGAIANLAMNETNQELIMTQG----------------GIGLLSTTAAN-----AEDPQTLRMVAGAIANLCGNDK 104 (246)
Q Consensus 46 ~~~~a~~~L~~la~~~~~~~~i~~~g----------------~i~~L~~ll~~-----~~~~~~~~~a~~aL~~L~~~~~ 104 (246)
.-..++..|.|++..++....+.+.+ .+..|+..+.. .+...-..+.+..+.|++..++
T Consensus 11 ~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~~ 90 (192)
T PF04063_consen 11 LADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLPE 90 (192)
T ss_pred hHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCHH
Confidence 45568899999999887777555432 24466665554 1223446689999999999999
Q ss_pred hHHHHHhc--CC--HHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHh---CCChHHHHHccc
Q 025930 105 LQLKLRGE--GG--IKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLID---DGALPWIVQNSN 173 (246)
Q Consensus 105 ~~~~l~~~--g~--i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~---~g~i~~Lv~ll~ 173 (246)
.++.+.+. +. +..|+.+..+.+..=+.-+++++.|+|+. .+....+.. .+.+|.|+--+.
T Consensus 91 gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd---------~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 91 GRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFD---------TDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred HHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhcc---------HhHHHHhcCchhhhhHHHHHhhcc
Confidence 99999854 34 66777777777666677888999999974 244455554 356676655444
No 104
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=96.46 E-value=0.062 Score=49.42 Aligned_cols=152 Identities=17% Similarity=0.157 Sum_probs=106.2
Q ss_pred CCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchH---HHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchh
Q 025930 29 GGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQ---ELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKL 105 (246)
Q Consensus 29 g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~---~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~ 105 (246)
-++...+.+|++. .|.++.+|+...+.|+.--.+. +.+.+.|.| |.+-+.. +++++.-..++|++.+.+....
T Consensus 604 ~ivStiL~~L~~k-~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~lge-~ypEvLgsil~Ai~~I~sv~~~ 679 (975)
T COG5181 604 MIVSTILKLLRSK-PPDVRIRAADLMGSLAKVLKACGETKELAKLGNI--LYENLGE-DYPEVLGSILKAICSIYSVHRF 679 (975)
T ss_pred HHHHHHHHHhcCC-CccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhcCc-ccHHHHHHHHHHHHHHhhhhcc
Confidence 3466778899986 7888999999988887553322 333343332 3344554 5788888888998888744433
Q ss_pred HHHH-HhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHH
Q 025930 106 QLKL-RGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIE 184 (246)
Q Consensus 106 ~~~l-~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~ 184 (246)
.+.- =-.|++|.|...|++.+..+..+.+..+.-+|... +.....|+.|. .---|+++|++++.++|.+|.
T Consensus 680 ~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~-----peyi~~rEWMR---IcfeLvd~Lks~nKeiRR~A~ 751 (975)
T COG5181 680 RSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNS-----PEYIGVREWMR---ICFELVDSLKSWNKEIRRNAT 751 (975)
T ss_pred cccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcC-----cccCCHHHHHH---HHHHHHHHHHHhhHHHHHhhh
Confidence 2111 12478999999999999999999998888888632 12234455544 334678889999999999999
Q ss_pred HHHHHhcc
Q 025930 185 LALCHLAQ 192 (246)
Q Consensus 185 ~aL~~La~ 192 (246)
..++.++.
T Consensus 752 ~tfG~Is~ 759 (975)
T COG5181 752 ETFGCISR 759 (975)
T ss_pred hhhhhHHh
Confidence 88887754
No 105
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.40 E-value=0.14 Score=47.89 Aligned_cols=184 Identities=13% Similarity=0.133 Sum_probs=117.8
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh-CCchhHHH
Q 025930 31 LTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC-GNDKLQLK 108 (246)
Q Consensus 31 i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~-~~~~~~~~ 108 (246)
-+.++.+|+++ .|-+++.|+.+++.+-.. ++. +. ..+|.|..-|.+ +|+.++..|.+.++.|+ .+|.+.-.
T Consensus 146 a~Dv~tLL~ss-kpYvRKkAIl~lykvFLkYPeA---lr--~~FprL~EkLeD-pDp~V~SAAV~VICELArKnPknyL~ 218 (877)
T KOG1059|consen 146 ADDVFTLLNSS-KPYVRKKAILLLYKVFLKYPEA---LR--PCFPRLVEKLED-PDPSVVSAAVSVICELARKNPQNYLQ 218 (877)
T ss_pred HHHHHHHHhcC-chHHHHHHHHHHHHHHHhhhHh---Hh--hhHHHHHHhccC-CCchHHHHHHHHHHHHHhhCCccccc
Confidence 45678888886 788899999999988544 322 11 257888888887 78999999999999999 67877544
Q ss_pred HHhcCCHHHHHHHhc-CCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCCh-hHHHHHHHH
Q 025930 109 LRGEGGIKALLGMVR-CGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEAS-PIRRHIELA 186 (246)
Q Consensus 109 l~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~-~v~~~a~~a 186 (246)
+ .|.+.++|- +.+..+....+..+++|+-.+ |... ...+|+|-.++++... .+-+.+..+
T Consensus 219 L-----AP~ffkllttSsNNWmLIKiiKLF~aLtplE--------PRLg-----KKLieplt~li~sT~AmSLlYECvNT 280 (877)
T KOG1059|consen 219 L-----APLFYKLLVTSSNNWVLIKLLKLFAALTPLE--------PRLG-----KKLIEPITELMESTVAMSLLYECVNT 280 (877)
T ss_pred c-----cHHHHHHHhccCCCeehHHHHHHHhhccccC--------chhh-----hhhhhHHHHHHHhhHHHHHHHHHHHH
Confidence 3 577888886 566778899999999999432 3322 3578899998877643 444555544
Q ss_pred HHHh--cc-CchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHH----HHHccChhHHHHHHHh
Q 025930 187 LCHL--AQ-HEVNAKDMISGGALWELVRISRDCSREDIRTLAH----RTLTSSPAFQAEMRRL 242 (246)
Q Consensus 187 L~~L--a~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~----~~L~~~~~~~~e~~~~ 242 (246)
+..- +. .+++-..+.- +++.|-.++. ++++..+..+. +.++.+|++--+=+.+
T Consensus 281 VVa~s~s~g~~d~~asiqL--CvqKLr~fie-dsDqNLKYlgLlam~KI~ktHp~~Vqa~kdl 340 (877)
T KOG1059|consen 281 VVAVSMSSGMSDHSASIQL--CVQKLRIFIE-DSDQNLKYLGLLAMSKILKTHPKAVQAHKDL 340 (877)
T ss_pred heeehhccCCCCcHHHHHH--HHHHHhhhhh-cCCccHHHHHHHHHHHHhhhCHHHHHHhHHH
Confidence 4322 22 1122111111 3445555554 34444554444 3335677665554443
No 106
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.40 E-value=0.062 Score=44.43 Aligned_cols=139 Identities=11% Similarity=0.005 Sum_probs=95.8
Q ss_pred HHhcCCcchHHHHHhcCcHHHHHHHHhcCC----ChHHHHHHHHHHHHhh--CCchhHHHHHhcCCHHHHHHHhcCCCHH
Q 025930 55 ANLAMNETNQELIMTQGGIGLLSTTAANAE----DPQTLRMVAGAIANLC--GNDKLQLKLRGEGGIKALLGMVRCGHPD 128 (246)
Q Consensus 55 ~~la~~~~~~~~i~~~g~i~~L~~ll~~~~----~~~~~~~a~~aL~~L~--~~~~~~~~l~~~g~i~~L~~ll~~~~~~ 128 (246)
--+|.|++.|..+.+.+..-.|...+.... .+.++-.+++.+..+. .+++....+.+...+|.+++.|..+++-
T Consensus 75 Q~vAshpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~Gsel 154 (262)
T PF04078_consen 75 QCVASHPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSEL 154 (262)
T ss_dssp HHHHH-TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HH
T ss_pred HHHHcChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHH
Confidence 355899999999999887766666665421 2556778899999998 4677778888999999999999988766
Q ss_pred HHHHHHHHHHHhhcccccccccCChhhhHHHHh--------CCChHHHHH-cccCCChhHHHHHHHHHHHhccCchhHHH
Q 025930 129 VLAQVARGIANFAKCESRASTQGTKTGRSLLID--------DGALPWIVQ-NSNNEASPIRRHIELALCHLAQHEVNAKD 199 (246)
Q Consensus 129 ~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~--------~g~i~~Lv~-ll~~~~~~v~~~a~~aL~~La~~~~~~~~ 199 (246)
.+.-|..++..+-.. +.+-+-+.+ ..++..++. +...+++++-++..+|...|+.++..|..
T Consensus 155 SKtvAtfIlqKIL~d---------d~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~a 225 (262)
T PF04078_consen 155 SKTVATFILQKILLD---------DVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREA 225 (262)
T ss_dssp HHHHHHHHHHHHHHS---------HHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHH
T ss_pred HHHHHHHHHHHHHcc---------hhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHH
Confidence 666666666554421 232222221 123444443 45667999999999999999999999988
Q ss_pred HHh
Q 025930 200 MIS 202 (246)
Q Consensus 200 i~~ 202 (246)
+.+
T Consensus 226 L~~ 228 (262)
T PF04078_consen 226 LRQ 228 (262)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 107
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=96.37 E-value=0.35 Score=41.94 Aligned_cols=197 Identities=12% Similarity=0.049 Sum_probs=141.6
Q ss_pred HHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHH-----HHHhcCcHHHHHHHHhcCCChHHHHHHHHHH
Q 025930 23 EKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQE-----LIMTQGGIGLLSTTAANAEDPQTLRMVAGAI 96 (246)
Q Consensus 23 ~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~-----~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL 96 (246)
+.+...|.+..|+..|..- +-+.++.++.+..++-.. .+.+. .+. ...-.++..++...+++++--.+-..|
T Consensus 70 ~Ei~~~dll~~Li~~L~~L-~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~-~~~peil~~L~~gy~~~dial~~g~ml 147 (335)
T PF08569_consen 70 QEIYRSDLLYLLIRNLPKL-DFESRKDVAQIFSNLLRRQIGSRSPPTVDYLE-RHRPEILDILLRGYENPDIALNCGDML 147 (335)
T ss_dssp HHHHHHTHHHHHHHTGGGS--HHHHHHHHHHHHHHHT--BTTB--HHHHHHH-T--THHHHHHHHGGGSTTTHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHhhhC-CCcccccHHHHHHHHHhhccCCCCCchHHHHH-hCCHHHHHHHHHHhcCccccchHHHHH
Confidence 4566789999999999886 677788888888888655 22322 222 222445556666666777776788888
Q ss_pred HHhhCCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCC---ChHHHHHccc
Q 025930 97 ANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDG---ALPWIVQNSN 173 (246)
Q Consensus 97 ~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g---~i~~Lv~ll~ 173 (246)
+.++..+...+.+.....+..+.+....++-++..-|..++..+-. ............+ .+.....|+.
T Consensus 148 Rec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt--------~hk~~~a~fl~~n~d~ff~~~~~Ll~ 219 (335)
T PF08569_consen 148 RECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLT--------RHKKLVAEFLSNNYDRFFQKYNKLLE 219 (335)
T ss_dssp HHHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHH--------SSHHHHHHHHHHTHHHHHHHHHHHCT
T ss_pred HHHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHh--------ccHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 8888888888888888889999999999999999999999997542 2245555555443 4667788999
Q ss_pred CCChhHHHHHHHHHHHhccCchhHHHHHh----CCcHHHHHHHHhcCCHHHHHHHHHHHHc
Q 025930 174 NEASPIRRHIELALCHLAQHEVNAKDMIS----GGALWELVRISRDCSREDIRTLAHRTLT 230 (246)
Q Consensus 174 ~~~~~v~~~a~~aL~~La~~~~~~~~i~~----~g~i~~L~~ll~~~~~~~~~~~A~~~L~ 230 (246)
+++=-+|..++..|+.+-.++.+-..|.. ..-+..++.+++ +..+.++-.|.-..+
T Consensus 220 s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~-d~sk~Iq~eAFhvFK 279 (335)
T PF08569_consen 220 SSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLR-DKSKNIQFEAFHVFK 279 (335)
T ss_dssp -SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT--S-HHHHHHHHHHHH
T ss_pred CCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhc-CcchhhhHHHHHHHH
Confidence 99999999999999999998888766653 244455566666 455567777776654
No 108
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.23 E-value=0.045 Score=42.95 Aligned_cols=91 Identities=18% Similarity=0.164 Sum_probs=70.9
Q ss_pred ChHHHHHHHHHHHHhh-CCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCC
Q 025930 85 DPQTLRMVAGAIANLC-GNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDG 163 (246)
Q Consensus 85 ~~~~~~~a~~aL~~L~-~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g 163 (246)
|+.++.+++.++.-|+ ..+...+. .++.+...|+++++.+++.|+..|..|...+ .... .|
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~-----~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d-------~ik~------k~ 62 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEP-----YLPNLYKCLRDEDPLVRKTALLVLSHLILED-------MIKV------KG 62 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHh-----HHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC-------ceee------hh
Confidence 5778889999999998 44443333 3788999999999999999999999987421 1111 23
Q ss_pred C-hHHHHHcccCCChhHHHHHHHHHHHhccC
Q 025930 164 A-LPWIVQNSNNEASPIRRHIELALCHLAQH 193 (246)
Q Consensus 164 ~-i~~Lv~ll~~~~~~v~~~a~~aL~~La~~ 193 (246)
- +..++.++.+++++++..|..++..+...
T Consensus 63 ~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 63 QLFSRILKLLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred hhhHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 3 47788888999999999999999999774
No 109
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.23 E-value=0.17 Score=47.37 Aligned_cols=144 Identities=14% Similarity=0.103 Sum_probs=89.3
Q ss_pred hCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh-CCchh
Q 025930 28 AGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC-GNDKL 105 (246)
Q Consensus 28 ~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~-~~~~~ 105 (246)
...+|.|.+-|..+ ||.++..|+.+++.||.. +.+.-. .-|.+..++....+.=+.........+|+ .-|..
T Consensus 180 r~~FprL~EkLeDp-Dp~V~SAAV~VICELArKnPknyL~-----LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRL 253 (877)
T KOG1059|consen 180 RPCFPRLVEKLEDP-DPSVVSAAVSVICELARKNPQNYLQ-----LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRL 253 (877)
T ss_pred hhhHHHHHHhccCC-CchHHHHHHHHHHHHHhhCCccccc-----ccHHHHHHHhccCCCeehHHHHHHHhhccccCchh
Confidence 45689999999986 999999999999999865 544433 35788888876555545555666666666 34554
Q ss_pred HHHHHhcCCHHHHHHHhcCCC-HHHHHHHHHHHH--HhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHH
Q 025930 106 QLKLRGEGGIKALLGMVRCGH-PDVLAQVARGIA--NFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRH 182 (246)
Q Consensus 106 ~~~l~~~g~i~~L~~ll~~~~-~~~~~~a~~~L~--nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~ 182 (246)
.+.+ ++++..++.+.. ..+...++.++. |++.. ++++..... =+++.|-.++.+.|+.+++.
T Consensus 254 gKKL-----ieplt~li~sT~AmSLlYECvNTVVa~s~s~g-------~~d~~asiq---LCvqKLr~fiedsDqNLKYl 318 (877)
T KOG1059|consen 254 GKKL-----IEPITELMESTVAMSLLYECVNTVVAVSMSSG-------MSDHSASIQ---LCVQKLRIFIEDSDQNLKYL 318 (877)
T ss_pred hhhh-----hhHHHHHHHhhHHHHHHHHHHHHheeehhccC-------CCCcHHHHH---HHHHHHhhhhhcCCccHHHH
Confidence 4443 677888777653 224444444333 33321 111111111 13556666666667777777
Q ss_pred HHHHHHHhcc
Q 025930 183 IELALCHLAQ 192 (246)
Q Consensus 183 a~~aL~~La~ 192 (246)
++.|+..++.
T Consensus 319 gLlam~KI~k 328 (877)
T KOG1059|consen 319 GLLAMSKILK 328 (877)
T ss_pred HHHHHHHHhh
Confidence 7777776654
No 110
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=96.18 E-value=0.22 Score=45.25 Aligned_cols=171 Identities=12% Similarity=0.133 Sum_probs=115.1
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCC---hHHHHHHHHHHHHhhCCchhHH
Q 025930 31 LTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAED---PQTLRMVAGAIANLCGNDKLQL 107 (246)
Q Consensus 31 i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~---~~~~~~a~~aL~~L~~~~~~~~ 107 (246)
...+.+.+.++ +...+..|...|..++.+......++...|+..|..++.++.. ..+....+.+...+-...-..=
T Consensus 85 a~~i~e~l~~~-~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW 163 (713)
T KOG2999|consen 85 AKRIMEILTEG-NNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW 163 (713)
T ss_pred HHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence 46678888887 4455777999999999999999999999999999999998654 3445455555555541111100
Q ss_pred HHHhcCCHHHHHHHhc--CCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHH
Q 025930 108 KLRGEGGIKALLGMVR--CGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIEL 185 (246)
Q Consensus 108 ~l~~~g~i~~L~~ll~--~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~ 185 (246)
..+....|.....+.. ..+..+...|+..|-++.. +++..++.+.++--++.|+..+...+..++..|..
T Consensus 164 ~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl--------~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aia 235 (713)
T KOG2999|consen 164 ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVL--------GSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIA 235 (713)
T ss_pred eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHh--------CChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHH
Confidence 0111122233333332 3345577888888888885 45678888888888999999999999999888777
Q ss_pred HHHHhcc--CchhHHHHHhCCcHHHHH
Q 025930 186 ALCHLAQ--HEVNAKDMISGGALWELV 210 (246)
Q Consensus 186 aL~~La~--~~~~~~~i~~~g~i~~L~ 210 (246)
.+-.|-. .++-|+.+.+.-....+.
T Consensus 236 l~nal~~~a~~~~R~~~~~~l~~~~~R 262 (713)
T KOG2999|consen 236 LLNALFRKAPDDKRFEMAKSLEQKQFR 262 (713)
T ss_pred HHHHHHhhCChHHHHHHHHHHHHHHHH
Confidence 7766632 444566666543333333
No 111
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.14 E-value=0.18 Score=43.18 Aligned_cols=176 Identities=13% Similarity=0.077 Sum_probs=129.6
Q ss_pred HHHHHHHhcCC---CCHHHHHHHHHHHHHhcCC-cchH----HHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCC
Q 025930 31 LTSLLMLLGSS---EDETIHRVAAGAIANLAMN-ETNQ----ELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGN 102 (246)
Q Consensus 31 i~~Li~ll~~~---~~~~~~~~a~~~L~~la~~-~~~~----~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~ 102 (246)
+|.+.-.|+.+ +|..++..++..++.+..+ +.|. ..++..|..+.++..+.. +|.++-..|...+..++..
T Consensus 80 apnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgg-eddeVAkAAiesikrialf 158 (524)
T KOG4413|consen 80 APNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGG-EDDEVAKAAIESIKRIALF 158 (524)
T ss_pred chhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcC-CcHHHHHHHHHHHHHHHhc
Confidence 44444444432 3667788899999988777 3222 234567778888888876 5677888899999999998
Q ss_pred chhHHHHHhcCCHHHHHH--HhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccC-CChhH
Q 025930 103 DKLQLKLRGEGGIKALLG--MVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNN-EASPI 179 (246)
Q Consensus 103 ~~~~~~l~~~g~i~~L~~--ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~-~~~~v 179 (246)
+..-+.+.+....+.+-. +....+.-.+..+...+-.+.+ -+++.-....+.|.+..|..-++. .|.-+
T Consensus 159 paaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifS--------iSpesaneckkSGLldlLeaElkGteDtLV 230 (524)
T KOG4413|consen 159 PAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFS--------ISPESANECKKSGLLDLLEAELKGTEDTLV 230 (524)
T ss_pred HHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHh--------cCHHHHhHhhhhhHHHHHHHHhcCCcceee
Confidence 888888887776655422 2223334566777777777664 346777777778999988887776 57778
Q ss_pred HHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhc
Q 025930 180 RRHIELALCHLAQHEVNAKDMISGGALWELVRISRD 215 (246)
Q Consensus 180 ~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~ 215 (246)
+..+......|+..+-.++-+.+.|.++.+..++..
T Consensus 231 ianciElvteLaeteHgreflaQeglIdlicnIIsG 266 (524)
T KOG4413|consen 231 IANCIELVTELAETEHGREFLAQEGLIDLICNIISG 266 (524)
T ss_pred hhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhC
Confidence 888999999999888888888899999999999975
No 112
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=96.11 E-value=0.38 Score=44.12 Aligned_cols=164 Identities=12% Similarity=0.054 Sum_probs=98.4
Q ss_pred HHhHhhccccccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHH
Q 025930 10 SVKSEDIRAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTL 89 (246)
Q Consensus 10 ~~~~~~~~~~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~ 89 (246)
.++..++.+....-..-...+||.+.+.|-+. .+.+++.+..+|.+++.--+|..... .+|.|++.+.+. ...+.
T Consensus 276 ellg~m~~~ap~qLs~~lp~iiP~lsevl~DT-~~evr~a~~~~l~~~~svidN~dI~~---~ip~Lld~l~dp-~~~~~ 350 (569)
T KOG1242|consen 276 ELLGAMADCAPKQLSLCLPDLIPVLSEVLWDT-KPEVRKAGIETLLKFGSVIDNPDIQK---IIPTLLDALADP-SCYTP 350 (569)
T ss_pred HHHHHHHHhchHHHHHHHhHhhHHHHHHHccC-CHHHHHHHHHHHHHHHHhhccHHHHH---HHHHHHHHhcCc-ccchH
Confidence 33444443333344455678999999999885 89999999999999977765665332 577888887763 22233
Q ss_pred HHHHHHHHHhhCCchhHHHHHhcCC----HHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCCh
Q 025930 90 RMVAGAIANLCGNDKLQLKLRGEGG----IKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGAL 165 (246)
Q Consensus 90 ~~a~~aL~~L~~~~~~~~~l~~~g~----i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i 165 (246)
.+...|..=.--.+ ++.-. +|.|-+-+...+..+++.++.++.|+|.-- .++..-..+.. ..+
T Consensus 351 -e~~~~L~~ttFV~~-----V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~Lv------eDp~~lapfl~-~Ll 417 (569)
T KOG1242|consen 351 -ECLDSLGATTFVAE-----VDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLV------EDPKDLAPFLP-SLL 417 (569)
T ss_pred -HHHHhhcceeeeee-----ecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhh------cCHHHHhhhHH-HHh
Confidence 22223222110000 11122 444444555567788899999999999631 01221221221 234
Q ss_pred HHHHHcccCCChhHHHHHHHHHHHhc
Q 025930 166 PWIVQNSNNEASPIRRHIELALCHLA 191 (246)
Q Consensus 166 ~~Lv~ll~~~~~~v~~~a~~aL~~La 191 (246)
|-+-..+....|++|..+.++|+.+-
T Consensus 418 p~lk~~~~d~~PEvR~vaarAL~~l~ 443 (569)
T KOG1242|consen 418 PGLKENLDDAVPEVRAVAARALGALL 443 (569)
T ss_pred hHHHHHhcCCChhHHHHHHHHHHHHH
Confidence 55555555568999999999997763
No 113
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.08 E-value=0.051 Score=38.19 Aligned_cols=84 Identities=13% Similarity=0.115 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhh-CCc-hhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHh--CCC
Q 025930 89 LRMVAGAIANLC-GND-KLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLID--DGA 164 (246)
Q Consensus 89 ~~~a~~aL~~L~-~~~-~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~--~g~ 164 (246)
+..++.+|...+ .-+ .....+ .-.+++++..+.++++.++..|+.+|.|++. ..+..+.. ...
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l--~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k-----------~~~~~~l~~f~~I 69 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYL--DEILPPVLKCFDDQDSRVRYYACEALYNISK-----------VARGEILPYFNEI 69 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHH--HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH
Confidence 345566666665 222 222222 2368999999999999999999999999994 55555553 356
Q ss_pred hHHHHHcccCCChhHHHHHHH
Q 025930 165 LPWIVQNSNNEASPIRRHIEL 185 (246)
Q Consensus 165 i~~Lv~ll~~~~~~v~~~a~~ 185 (246)
++.|..++.+.++.||..|..
T Consensus 70 F~~L~kl~~D~d~~Vr~~a~~ 90 (97)
T PF12755_consen 70 FDALCKLSADPDENVRSAAEL 90 (97)
T ss_pred HHHHHHHHcCCchhHHHHHHH
Confidence 788889999999999877743
No 114
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.06 E-value=0.37 Score=45.87 Aligned_cols=92 Identities=11% Similarity=0.097 Sum_probs=71.7
Q ss_pred CChHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCC
Q 025930 84 EDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDG 163 (246)
Q Consensus 84 ~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g 163 (246)
+|+.++-.|.+++..+ ..++.-.. .++++.+++.++++.+++.|+-++..+=. -.++...+.|
T Consensus 104 ~N~~iR~~AlR~ls~l-~~~el~~~-----~~~~ik~~l~d~~ayVRk~Aalav~kly~-----------ld~~l~~~~g 166 (757)
T COG5096 104 PNEEIRGFALRTLSLL-RVKELLGN-----IIDPIKKLLTDPHAYVRKTAALAVAKLYR-----------LDKDLYHELG 166 (757)
T ss_pred CCHHHHHHHHHHHHhc-ChHHHHHH-----HHHHHHHHccCCcHHHHHHHHHHHHHHHh-----------cCHhhhhccc
Confidence 5788888877777754 22222222 47889999999999999999999998762 3344555678
Q ss_pred ChHHHHHcccCCChhHHHHHHHHHHHhcc
Q 025930 164 ALPWIVQNSNNEASPIRRHIELALCHLAQ 192 (246)
Q Consensus 164 ~i~~Lv~ll~~~~~~v~~~a~~aL~~La~ 192 (246)
.+..+..++.+.+|.+..+|+.+|..+.-
T Consensus 167 ~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 167 LIDILKELVADSDPIVIANALASLAEIDP 195 (757)
T ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence 89999999999999999999999988754
No 115
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=95.97 E-value=0.052 Score=41.71 Aligned_cols=145 Identities=14% Similarity=0.129 Sum_probs=90.9
Q ss_pred HHHHHHHHhc-CCChHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccC
Q 025930 73 IGLLSTTAAN-AEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQG 151 (246)
Q Consensus 73 i~~L~~ll~~-~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~ 151 (246)
+..++..+.. ...++++..+.-++..+- +..++...+ -.-+-+-..+..++.+-...+..++..+= |+
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~~~-~~~~~i~~~~~~~~~d~~i~~~~~l~~lf--------p~ 73 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEFKE-KISDFIESLLDEGEMDSLIIAFSALTALF--------PG 73 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHHHH-HHHHHHHHHHCCHHCCHHHHHHHHHHHHC--------TT
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHHHH-HHHHHHHHHHccccchhHHHHHHHHHHHh--------CC
Confidence 3444443332 234668888888887773 333333222 12222333334433445667777777665 45
Q ss_pred ChhhhHHHH-hCCChHHHHHccc--CCChhHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHH-HHHHHHH
Q 025930 152 TKTGRSLLI-DDGALPWIVQNSN--NEASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSRED-IRTLAHR 227 (246)
Q Consensus 152 ~~~~~~~l~-~~g~i~~Lv~ll~--~~~~~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~-~~~~A~~ 227 (246)
.++.-..+. .+|..+.+..++. ..+..++..++.+|..=|.+...| ..+...++++|.++.+.++++. +|..|.-
T Consensus 74 ~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r-~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v 152 (157)
T PF11701_consen 74 PPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCR-TFISKNYVSWLKELYKNSKDDSEIRVLAAV 152 (157)
T ss_dssp THHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHH-HCCHHHCHHHHHHHTTTCC-HH-CHHHHHH
T ss_pred CHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHH-HHHHHHHHHHHHHHHccccchHHHHHHHHH
Confidence 566666655 7888999999998 778889888999888777776665 5555678899999997666665 6766655
Q ss_pred HH
Q 025930 228 TL 229 (246)
Q Consensus 228 ~L 229 (246)
.|
T Consensus 153 ~L 154 (157)
T PF11701_consen 153 GL 154 (157)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 116
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=95.91 E-value=0.068 Score=35.41 Aligned_cols=68 Identities=12% Similarity=-0.003 Sum_probs=60.0
Q ss_pred HHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHHHHhcCC
Q 025930 47 HRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGG 114 (246)
Q Consensus 47 ~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~ 114 (246)
.+.|.+++++++..+..-..+.+.+.++.++++..+.+...++-.+..+|.-++...+..+.+.+.|.
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~gW 71 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELGW 71 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcCC
Confidence 56789999999999888888888899999999999877778898899999999999999998888774
No 117
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.83 E-value=0.094 Score=47.68 Aligned_cols=157 Identities=14% Similarity=0.125 Sum_probs=105.0
Q ss_pred CCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHH---HHHHHhhCCchh
Q 025930 29 GGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVA---GAIANLCGNDKL 105 (246)
Q Consensus 29 g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~---~aL~~L~~~~~~ 105 (246)
..++.++..+.++ ++.++..|..-+.....-....-...-.|.+..++.++.+.+...+.+.+. +-|..+++.+..
T Consensus 250 ~~i~vlv~~l~ss-~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~ 328 (675)
T KOG0212|consen 250 DMINVLVPHLQSS-EPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERL 328 (675)
T ss_pred cchhhccccccCC-cHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhh
Confidence 3477788888876 788888887777776655433333333455566666666633223443332 234445555555
Q ss_pred HHHHHhcC-CHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHH
Q 025930 106 QLKLRGEG-GIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIE 184 (246)
Q Consensus 106 ~~~l~~~g-~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~ 184 (246)
++. ++.| .+..+.+.++++..+.+..+..-+.-|-.. ..++-.......++.|..-+.+.++++-..++
T Consensus 329 ~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~---------~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L 398 (675)
T KOG0212|consen 329 KEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHK---------APGQLLVHNDSIFLTLLKTLSDRSDEVVLLAL 398 (675)
T ss_pred ccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhh---------CcchhhhhccHHHHHHHHhhcCchhHHHHHHH
Confidence 544 5555 688899999999999999998777766521 12333333566889999999999999999999
Q ss_pred HHHHHhccCchh
Q 025930 185 LALCHLAQHEVN 196 (246)
Q Consensus 185 ~aL~~La~~~~~ 196 (246)
..+.++|.+++.
T Consensus 399 ~lla~i~~s~~~ 410 (675)
T KOG0212|consen 399 SLLASICSSSNS 410 (675)
T ss_pred HHHHHHhcCccc
Confidence 999999986654
No 118
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=95.82 E-value=0.036 Score=38.95 Aligned_cols=67 Identities=16% Similarity=0.155 Sum_probs=47.8
Q ss_pred hCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchH--HHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 025930 28 AGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQ--ELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANL 99 (246)
Q Consensus 28 ~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~--~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L 99 (246)
.-++++++..+.+. |+.++..|+.+|.|++..-... ..+. ..++.|..++.+ .|+.++ .++..|-++
T Consensus 26 ~~Il~pVL~~~~D~-d~rVRy~AcEaL~ni~k~~~~~~l~~f~--~IF~~L~kl~~D-~d~~Vr-~~a~~Ld~l 94 (97)
T PF12755_consen 26 DEILPPVLKCFDDQ-DSRVRYYACEALYNISKVARGEILPYFN--EIFDALCKLSAD-PDENVR-SAAELLDRL 94 (97)
T ss_pred HHHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHcC-CchhHH-HHHHHHHHH
Confidence 45699999999886 8889999999999998663221 1222 356667777776 567777 566666554
No 119
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.78 E-value=0.14 Score=49.80 Aligned_cols=176 Identities=16% Similarity=0.157 Sum_probs=128.0
Q ss_pred hccccccHHHHHHhCCHHHHHHHhcCC-C-CHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcCCChHHHHH
Q 025930 15 DIRAQSNQEKIVEAGGLTSLLMLLGSS-E-DETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANAEDPQTLRM 91 (246)
Q Consensus 15 ~~~~~~~~~~i~~~g~i~~Li~ll~~~-~-~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~ 91 (246)
+|..++....++..+|-.-.++.|..+ . ++.-+--|+.+|+.+..+ .-.++...+.+.+.+.+..+.+..++-++..
T Consensus 540 LAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW 619 (1387)
T KOG1517|consen 540 LAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQW 619 (1387)
T ss_pred HhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHH
Confidence 466677777888888888888887762 1 234344489999999877 6688888888889988899988545777888
Q ss_pred HHHHHHHhh-CCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhH-----------HH
Q 025930 92 VAGAIANLC-GNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRS-----------LL 159 (246)
Q Consensus 92 a~~aL~~L~-~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~-----------~l 159 (246)
.+-+|..|= ..++.+=.=++.++...|..+|+.+.++++..|+.+|..+-..-+. ..++... .+
T Consensus 620 ~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d----~fde~~~~~~~~~~l~~~~~ 695 (1387)
T KOG1517|consen 620 LCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSD----NFDEQTLVVEEEIDLDDERT 695 (1387)
T ss_pred HHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhccccc----ccchhhhhhhhhhcchhhhh
Confidence 888888886 4566655556788999999999999999999999999977542000 0111111 11
Q ss_pred HhCCChH----HHHHcccCCChhHHHHHHHHHHHhccCc
Q 025930 160 IDDGALP----WIVQNSNNEASPIRRHIELALCHLAQHE 194 (246)
Q Consensus 160 ~~~g~i~----~Lv~ll~~~~~~v~~~a~~aL~~La~~~ 194 (246)
.-+..++ .++.+++.+.+-++.+...+|.+.....
T Consensus 696 ~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~ 734 (1387)
T KOG1517|consen 696 SIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGY 734 (1387)
T ss_pred hHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhh
Confidence 1122233 7788889999999999999999887743
No 120
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.77 E-value=0.014 Score=31.73 Aligned_cols=28 Identities=25% Similarity=0.382 Sum_probs=25.1
Q ss_pred hHHHHHcccCCChhHHHHHHHHHHHhcc
Q 025930 165 LPWIVQNSNNEASPIRRHIELALCHLAQ 192 (246)
Q Consensus 165 i~~Lv~ll~~~~~~v~~~a~~aL~~La~ 192 (246)
+|.+++++.+++++||..|+.+|..++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 6899999999999999999999999875
No 121
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.70 E-value=1.3 Score=41.66 Aligned_cols=168 Identities=9% Similarity=0.092 Sum_probs=100.1
Q ss_pred hhhhhHHhHhhccccccHHHHHHhCCHHHHHHHhcCC---CCHH---HHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHH
Q 025930 5 ILNTISVKSEDIRAQSNQEKIVEAGGLTSLLMLLGSS---EDET---IHRVAAGAIANLAMN-ETNQELIMTQGGIGLLS 77 (246)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~i~~~g~i~~Li~ll~~~---~~~~---~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~ 77 (246)
+.+.++++..+...++.-....-..+++.+++..+.+ .++. .+.....-.-+++.+ +...+.++. .+..|-
T Consensus 258 ~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~--~~~~Lg 335 (938)
T KOG1077|consen 258 QVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSR--AVNQLG 335 (938)
T ss_pred HHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHH--HHHHHH
Confidence 3456666777755555544444445556666665522 1222 111122222345544 444444443 566666
Q ss_pred HHHhcCCChHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhc-CCCHHHHHHHHHHHHHhhcccccccccCChhhh
Q 025930 78 TTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVR-CGHPDVLAQVARGIANFAKCESRASTQGTKTGR 156 (246)
Q Consensus 78 ~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~ 156 (246)
+++++. ...++=-|+.-++.|++.+.....+-.. .+.++..|+ ..|..+++.|+..|-.+|- .++.
T Consensus 336 ~fls~r-E~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD----------~~Na 402 (938)
T KOG1077|consen 336 QFLSHR-ETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCD----------VSNA 402 (938)
T ss_pred HHhhcc-cccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhc----------hhhH
Confidence 666653 3556666777777777665555555443 567777887 7789999999999998882 2333
Q ss_pred HHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhcc
Q 025930 157 SLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQ 192 (246)
Q Consensus 157 ~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~ 192 (246)
+. .+.-|++.+...+..+|+....=...|+.
T Consensus 403 k~-----IV~elLqYL~tAd~sireeivlKvAILaE 433 (938)
T KOG1077|consen 403 KQ-----IVAELLQYLETADYSIREEIVLKVAILAE 433 (938)
T ss_pred HH-----HHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 32 35567777777888999987766666653
No 122
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=95.65 E-value=0.56 Score=36.68 Aligned_cols=91 Identities=18% Similarity=0.255 Sum_probs=67.9
Q ss_pred CHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHHHHhcCC-HHHHHHH
Q 025930 43 DETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGG-IKALLGM 121 (246)
Q Consensus 43 ~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~-i~~L~~l 121 (246)
+|.++..++.+++-|+..-++ +++ ..++.+...+++ +++.+++.|+.+|..|...+-.+-+ |. +..++.+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~---~ve-~~~~~l~~~L~D-~~~~VR~~al~~Ls~Li~~d~ik~k----~~l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN---LVE-PYLPNLYKCLRD-EDPLVRKTALLVLSHLILEDMIKVK----GQLFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH---HHH-hHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHcCceeeh----hhhhHHHHHH
Confidence 467888899999988765321 121 247788888888 5899999999999999854332211 22 3667788
Q ss_pred hcCCCHHHHHHHHHHHHHhhc
Q 025930 122 VRCGHPDVLAQVARGIANFAK 142 (246)
Q Consensus 122 l~~~~~~~~~~a~~~L~nL~~ 142 (246)
+.+++++++..|...+..+..
T Consensus 72 l~D~~~~Ir~~A~~~~~e~~~ 92 (178)
T PF12717_consen 72 LVDENPEIRSLARSFFSELLK 92 (178)
T ss_pred HcCCCHHHHHHHHHHHHHHHH
Confidence 889999999999999999884
No 123
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=95.61 E-value=0.1 Score=34.56 Aligned_cols=66 Identities=12% Similarity=0.089 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhc-CCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCC
Q 025930 89 LRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVR-CGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDG 163 (246)
Q Consensus 89 ~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g 163 (246)
.+.+++|+.++++.+.....+.+.+.++.++++.. ++...++-.|..+|.-++ .+.++.+.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis---------~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLIS---------STEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHh---------CCHHHHHHHHHcC
Confidence 45899999999999888888888899999999997 667788999999999988 4568888777665
No 124
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=95.60 E-value=1.5 Score=38.76 Aligned_cols=102 Identities=15% Similarity=0.305 Sum_probs=76.7
Q ss_pred HHHHH-hCCHHHHHHHhcCCC--CHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHh-cC--CChHHHHHHHHH
Q 025930 23 EKIVE-AGGLTSLLMLLGSSE--DETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAA-NA--EDPQTLRMVAGA 95 (246)
Q Consensus 23 ~~i~~-~g~i~~Li~ll~~~~--~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~-~~--~~~~~~~~a~~a 95 (246)
..+++ ......|-..+++.. .+.+-..|+.++..+-.+ +..-..+.|.|.++.+++.+. .+ ...++....-.+
T Consensus 99 rnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~ 178 (379)
T PF06025_consen 99 RNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNV 178 (379)
T ss_pred ccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHH
Confidence 34556 455666666666642 355667789999988666 666677788999999998877 32 346677677789
Q ss_pred HHHhhCCchhHHHHHhcCCHHHHHHHhcC
Q 025930 96 IANLCGNDKLQLKLRGEGGIKALLGMVRC 124 (246)
Q Consensus 96 L~~L~~~~~~~~~l~~~g~i~~L~~ll~~ 124 (246)
+..+|.|....+.+.+.+.++.+++++.+
T Consensus 179 l~AicLN~~Gl~~~~~~~~l~~~f~if~s 207 (379)
T PF06025_consen 179 LSAICLNNRGLEKVKSSNPLDKLFEIFTS 207 (379)
T ss_pred HhHHhcCHHHHHHHHhcChHHHHHHHhCC
Confidence 99999999999999999999999887743
No 125
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.52 E-value=0.28 Score=46.81 Aligned_cols=175 Identities=14% Similarity=0.047 Sum_probs=112.0
Q ss_pred HHHHhcCC-cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHHHHhcCCH--HHHHHHhcCCCH-H
Q 025930 53 AIANLAMN-ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGI--KALLGMVRCGHP-D 128 (246)
Q Consensus 53 ~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i--~~L~~ll~~~~~-~ 128 (246)
+|++.+.+ +++.+.+.+.||...+...++..++.+.+..+.+.+.|++...+.+.......-+ ..+-.++...+. +
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 78899877 8899999999999999999997777888999999999999555443332221111 233334444444 7
Q ss_pred HHHHHHHHHHHhhcc-cccccccCC--------------hhhhHHHHhCCChHH-HHHccc-CCChhHHHHHHHHHHHhc
Q 025930 129 VLAQVARGIANFAKC-ESRASTQGT--------------KTGRSLLIDDGALPW-IVQNSN-NEASPIRRHIELALCHLA 191 (246)
Q Consensus 129 ~~~~a~~~L~nL~~~-~~~~~~~~~--------------~~~~~~l~~~g~i~~-Lv~ll~-~~~~~v~~~a~~aL~~La 191 (246)
....+++.|+.+... +.....+.. +...........+.+ +..++. +..+..+.-|++++.++.
T Consensus 574 rsY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~~ 653 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNVL 653 (699)
T ss_pred HHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHHH
Confidence 888899999987653 211000000 111111111222223 433443 346677888999999997
Q ss_pred c-CchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHH
Q 025930 192 Q-HEVNAKDMISGGALWELVRISRDCSREDIRTLAHR 227 (246)
Q Consensus 192 ~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~ 227 (246)
. +++.++.+.+.|+.+.+..+-........+..+..
T Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (699)
T KOG3665|consen 654 EQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVL 690 (699)
T ss_pred HcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHH
Confidence 7 77788888999999998887764444444444433
No 126
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=95.52 E-value=0.27 Score=40.80 Aligned_cols=95 Identities=9% Similarity=0.124 Sum_probs=78.9
Q ss_pred HHHHHHHHHHhh-CCchhHHHHHhcCCHHHHHHHhc-CCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChH
Q 025930 89 LRMVAGAIANLC-GNDKLQLKLRGEGGIKALLGMVR-CGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALP 166 (246)
Q Consensus 89 ~~~a~~aL~~L~-~~~~~~~~l~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~ 166 (246)
...|+..|.-++ .++..+..+.+...+..+++++. ...+.++..++.+|..+.. +++.+...+.+.+++.
T Consensus 108 i~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLl--------d~p~N~r~FE~~~Gl~ 179 (257)
T PF08045_consen 108 IALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILL--------DSPENQRDFEELNGLS 179 (257)
T ss_pred HHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHH--------cChHHHHHHHHhCCHH
Confidence 446778888888 78889999999999999999994 5678889999988887663 6678888999999999
Q ss_pred HHHHcccCC--ChhHHHHHHHHHHHhc
Q 025930 167 WIVQNSNNE--ASPIRRHIELALCHLA 191 (246)
Q Consensus 167 ~Lv~ll~~~--~~~v~~~a~~aL~~La 191 (246)
.++.++++. +.+++..+...|.-.-
T Consensus 180 ~v~~llk~~~~~~~~r~K~~EFL~fyl 206 (257)
T PF08045_consen 180 TVCSLLKSKSTDRELRLKCIEFLYFYL 206 (257)
T ss_pred HHHHHHccccccHHHhHHHHHHHHHHH
Confidence 999999876 6688888877776553
No 127
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.49 E-value=0.22 Score=46.96 Aligned_cols=189 Identities=17% Similarity=0.113 Sum_probs=125.3
Q ss_pred ccccccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHH-HhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHH--HHH
Q 025930 16 IRAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIA-NLAMNETNQELIMTQGGIGLLSTTAANAEDPQTL--RMV 92 (246)
Q Consensus 16 ~~~~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~-~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~--~~a 92 (246)
|....-+...|..|+...|+.+...+ .+..+.++..+|. .+...- .+ ....++++...+.. |.... -.+
T Consensus 491 A~~K~~~~~~Ik~~~~~aLlrl~~~q-~e~akl~~~~aL~~~i~f~~-~~----~~~v~~~~~s~~~~--d~~~~en~E~ 562 (748)
T KOG4151|consen 491 AKEKYERAKKIKPGGYEALLRLGQQQ-FEEAKLKWYHALAGKIDFPG-ER----SYEVVKPLDSALHN--DEKGLENFEA 562 (748)
T ss_pred hhhHHhcCccccccHHHHHHHHHHHh-chHHHHHHHHHHhhhcCCCC-Cc----hhhhhhhhcchhhh--hHHHHHHHHH
Confidence 45666677888999999999998876 4566777777777 222221 11 01245566565554 23222 257
Q ss_pred HHHHHHhh-CCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHh-CCChHHHHH
Q 025930 93 AGAIANLC-GNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLID-DGALPWIVQ 170 (246)
Q Consensus 93 ~~aL~~L~-~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~-~g~i~~Lv~ 170 (246)
+.++.||+ .++..++.+.+.-+++-+-..+..+++-++..++..+.||.+++ .-....+.+ ...++....
T Consensus 563 L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~--------~~~e~si~e~~~~l~~w~~ 634 (748)
T KOG4151|consen 563 LEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSP--------LLYERSIVEYKDRLKLWNL 634 (748)
T ss_pred HHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhH--------HHHHHHhhccccCchHHHH
Confidence 88999998 45666777887777777777788888999999999999999753 233333444 345777777
Q ss_pred cccCCChhHHHHHHHHHHHhcc-CchhHHHHH-hCCcHHHHHHHHhcCCHHH
Q 025930 171 NSNNEASPIRRHIELALCHLAQ-HEVNAKDMI-SGGALWELVRISRDCSRED 220 (246)
Q Consensus 171 ll~~~~~~v~~~a~~aL~~La~-~~~~~~~i~-~~g~i~~L~~ll~~~~~~~ 220 (246)
++...+.....++++++..++. ....+..+. -..+...++.++.+.....
T Consensus 635 ~~e~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~ 686 (748)
T KOG4151|consen 635 NLEVADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEI 686 (748)
T ss_pred HHHhhhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhh
Confidence 7776777888888888886655 444444233 3467777788887544443
No 128
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=95.45 E-value=0.37 Score=39.99 Aligned_cols=94 Identities=9% Similarity=0.167 Sum_probs=76.4
Q ss_pred HHHHHHHHhc-CCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh-CCchhHHHHHhcCCHHHHHHHhcCC-
Q 025930 49 VAAGAIANLA-MNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC-GNDKLQLKLRGEGGIKALLGMVRCG- 125 (246)
Q Consensus 49 ~a~~~L~~la-~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~-~~~~~~~~l~~~g~i~~L~~ll~~~- 125 (246)
.|..+|--++ .|+..|..+.+..++..++.++....++.++..++.+|..+. .++.|...+.+.+|+..++.++++.
T Consensus 110 ~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~~~ 189 (257)
T PF08045_consen 110 LALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKSKS 189 (257)
T ss_pred HHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHcccc
Confidence 3566776664 668999999999999999999976567888888888887765 8899999999999999999999854
Q ss_pred -CHHHHHHHHHHHHHhhc
Q 025930 126 -HPDVLAQVARGIANFAK 142 (246)
Q Consensus 126 -~~~~~~~a~~~L~nL~~ 142 (246)
+.+++-+++-.|.-+..
T Consensus 190 ~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 190 TDRELRLKCIEFLYFYLM 207 (257)
T ss_pred ccHHHhHHHHHHHHHHHc
Confidence 67787777777665543
No 129
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.45 E-value=0.071 Score=49.94 Aligned_cols=182 Identities=15% Similarity=0.135 Sum_probs=116.6
Q ss_pred CHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchh-HHH
Q 025930 30 GLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKL-QLK 108 (246)
Q Consensus 30 ~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~-~~~ 108 (246)
...+|...+++. ++.+++.|+....++-. .+.+.....|.++.|..++.+ +++.+..+|+.+|..+...+.+ ..-
T Consensus 122 ~~~Pl~~~l~d~-~~yvRktaa~~vakl~~--~~~~~~~~~gl~~~L~~ll~D-~~p~VVAnAlaaL~eI~e~~~~~~~~ 197 (734)
T KOG1061|consen 122 LCDPLLKCLKDD-DPYVRKTAAVCVAKLFD--IDPDLVEDSGLVDALKDLLSD-SNPMVVANALAALSEIHESHPSVNLL 197 (734)
T ss_pred HHHHHHHhccCC-ChhHHHHHHHHHHHhhc--CChhhccccchhHHHHHHhcC-CCchHHHHHHHHHHHHHHhCCCCCcc
Confidence 467888888875 78878776666666533 345667778889999999996 6899999999999999833322 111
Q ss_pred HHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHH
Q 025930 109 LRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALC 188 (246)
Q Consensus 109 l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~ 188 (246)
....-.+..++..+..-++.-+......+.+.. +.++ +++ ...+..+...+.+.++.+...+..++.
T Consensus 198 ~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~--------p~d~--~ea---~~i~~r~~p~Lqh~n~avvlsavKv~l 264 (734)
T KOG1061|consen 198 ELNPQLINKLLEALNECTEWGQIFILDCLAEYV--------PKDS--REA---EDICERLTPRLQHANSAVVLSAVKVIL 264 (734)
T ss_pred cccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcC--------CCCc--hhH---HHHHHHhhhhhccCCcceEeehHHHHH
Confidence 111112344455554444555555555555444 2222 111 124556666777778888888999999
Q ss_pred HhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHc
Q 025930 189 HLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLT 230 (246)
Q Consensus 189 ~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~ 230 (246)
++...........-....++|+.++...+ ++.-+|.+-+.
T Consensus 265 ~~~~~~~~~~~~~~~K~~~pl~tlls~~~--e~qyvaLrNi~ 304 (734)
T KOG1061|consen 265 QLVKYLKQVNELLFKKVAPPLVTLLSSES--EIQYVALRNIN 304 (734)
T ss_pred HHHHHHHHHHHHHHHHhcccceeeecccc--hhhHHHHhhHH
Confidence 88775444555555667777888886444 56666665554
No 130
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=95.40 E-value=0.087 Score=41.35 Aligned_cols=78 Identities=9% Similarity=0.027 Sum_probs=62.1
Q ss_pred HHHHHhcCcHHHHHHHHhc--------CCChHHHHHHHHHHHHhhCCchhHHHHH-hcCCHHHHHHHhcCCCHHHHHHHH
Q 025930 64 QELIMTQGGIGLLSTTAAN--------AEDPQTLRMVAGAIANLCGNDKLQLKLR-GEGGIKALLGMVRCGHPDVLAQVA 134 (246)
Q Consensus 64 ~~~i~~~g~i~~L~~ll~~--------~~~~~~~~~a~~aL~~L~~~~~~~~~l~-~~g~i~~L~~ll~~~~~~~~~~a~ 134 (246)
-+.|++.||+..|+.++.. ..+......++.++..+.++..+...++ ..+++..++..+.+++..++..++
T Consensus 100 v~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~l 179 (187)
T PF06371_consen 100 VQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLAL 179 (187)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHH
T ss_pred HHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHH
Confidence 3577788999999988754 1345677788999999998888877777 477999999999999999999999
Q ss_pred HHHHHhh
Q 025930 135 RGIANFA 141 (246)
Q Consensus 135 ~~L~nL~ 141 (246)
.+|..+|
T Consensus 180 eiL~~lc 186 (187)
T PF06371_consen 180 EILAALC 186 (187)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998887
No 131
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.29 E-value=0.96 Score=43.18 Aligned_cols=153 Identities=14% Similarity=0.101 Sum_probs=101.7
Q ss_pred HHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhcCCCHHH
Q 025930 50 AAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDV 129 (246)
Q Consensus 50 a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~ 129 (246)
+=.+|..++.+++.... ++-+++...+ .|.++++-..--|...+........+ ++..+.+=+.++++.+
T Consensus 40 mK~iIa~M~~G~dmssL------f~dViK~~~t-rd~ElKrL~ylYl~~yak~~P~~~lL----avNti~kDl~d~N~~i 108 (757)
T COG5096 40 MKKIIAQMSLGEDMSSL------FPDVIKNVAT-RDVELKRLLYLYLERYAKLKPELALL----AVNTIQKDLQDPNEEI 108 (757)
T ss_pred HHHHHHHHhcCCChHHH------HHHHHHHHHh-cCHHHHHHHHHHHHHHhccCHHHHHH----HHHHHHhhccCCCHHH
Confidence 33456666666542222 2223333333 57788877777777776333322222 3566778888999999
Q ss_pred HHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhccCchhHHHHHhCCcHHHH
Q 025930 130 LAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQHEVNAKDMISGGALWEL 209 (246)
Q Consensus 130 ~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L 209 (246)
+-.|+++++.+=. ++ +. ...++++.+++.++++.||+.|+.|+..+=.- .+...-+.|.+..+
T Consensus 109 R~~AlR~ls~l~~----------~e----l~-~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l--d~~l~~~~g~~~~l 171 (757)
T COG5096 109 RGFALRTLSLLRV----------KE----LL-GNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL--DKDLYHELGLIDIL 171 (757)
T ss_pred HHHHHHHHHhcCh----------HH----HH-HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc--CHhhhhcccHHHHH
Confidence 9999988887652 12 11 24688999999999999999999999999542 23445567888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHcc
Q 025930 210 VRISRDCSREDIRTLAHRTLTS 231 (246)
Q Consensus 210 ~~ll~~~~~~~~~~~A~~~L~~ 231 (246)
..++.+. ++.+.+.|..+|..
T Consensus 172 ~~l~~D~-dP~Vi~nAl~sl~~ 192 (757)
T COG5096 172 KELVADS-DPIVIANALASLAE 192 (757)
T ss_pred HHHhhCC-CchHHHHHHHHHHH
Confidence 8888854 45566777777764
No 132
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.19 E-value=1.1 Score=41.38 Aligned_cols=119 Identities=16% Similarity=0.191 Sum_probs=83.1
Q ss_pred CCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHH
Q 025930 101 GNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIR 180 (246)
Q Consensus 101 ~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~ 180 (246)
.+|+. ..+++ |.+..+++-..+++..++..++..|+-++-+- .--....-+|.+..|..-+.+..+.||
T Consensus 81 ~dpeg-~~~V~-~~~~h~lRg~eskdk~VR~r~lqila~~~d~v---------~eIDe~l~N~L~ekl~~R~~DRE~~VR 149 (885)
T COG5218 81 DDPEG-EELVA-GTFYHLLRGTESKDKKVRKRSLQILALLSDVV---------REIDEVLANGLLEKLSERLFDREKAVR 149 (885)
T ss_pred CChhh-hHHHH-HHHHHHHhcccCcchhHHHHHHHHHHHHHHhc---------chHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 45555 44433 56777777788999999999999999888321 111133446778888887777889999
Q ss_pred HHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccChh
Q 025930 181 RHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSSPA 234 (246)
Q Consensus 181 ~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~~ 234 (246)
..|+.+|+.+-....+-+.. ..-.|+.+++.+...++|.+|.--+-..++
T Consensus 150 ~eAv~~L~~~Qe~~~neen~----~~n~l~~~vqnDPS~EVRr~allni~vdns 199 (885)
T COG5218 150 REAVKVLCYYQEMELNEENR----IVNLLKDIVQNDPSDEVRRLALLNISVDNS 199 (885)
T ss_pred HHHHHHHHHHHhccCChHHH----HHHHHHHHHhcCcHHHHHHHHHHHeeeCCC
Confidence 99999999986533332222 233677888888888899988877765444
No 133
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=95.07 E-value=2.1 Score=37.86 Aligned_cols=158 Identities=13% Similarity=0.152 Sum_probs=106.3
Q ss_pred HHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcC-------------------------CC--------hHHHHHHHHH
Q 025930 50 AAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANA-------------------------ED--------PQTLRMVAGA 95 (246)
Q Consensus 50 a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~-------------------------~~--------~~~~~~a~~a 95 (246)
|+..|-.+... +..-..+.+.||+..+++.+..+ .+ ..+.+..+.+
T Consensus 4 av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~llK~lLk~ 83 (379)
T PF06025_consen 4 AVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEENKNEEAGSGIPPEYKESSVDGYSISYQRQQLLKSLLKF 83 (379)
T ss_pred HHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcccccCCCCCCCCCcccccccccccCHHHHHHHHHHHHH
Confidence 44555555443 44556677788888776665320 01 1223334444
Q ss_pred HHHhhC-CchhHHH---HHhcC-CHHHHHHHhcCC---CHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHH
Q 025930 96 IANLCG-NDKLQLK---LRGEG-GIKALLGMVRCG---HPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPW 167 (246)
Q Consensus 96 L~~L~~-~~~~~~~---l~~~g-~i~~L~~ll~~~---~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~ 167 (246)
+..+.. +...... +++.+ ....|...+++. -+.+...|+.++..+-. ..|..-..+.+.|.++.
T Consensus 84 l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~--------nePT~~~~l~e~Gl~~~ 155 (379)
T PF06025_consen 84 LSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIH--------NEPTSFSILQEAGLIDA 155 (379)
T ss_pred HHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHh--------cCCchhHHHHHcCChHH
Confidence 444445 3433333 44523 445555555543 46788889999998885 44788889999999999
Q ss_pred HHHccc-CC---ChhHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhc
Q 025930 168 IVQNSN-NE---ASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRD 215 (246)
Q Consensus 168 Lv~ll~-~~---~~~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~ 215 (246)
++..+. .+ +.++-...-.+|..+|-|.++.+.+.+.+.++.+.+++.+
T Consensus 156 ~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~f~if~s 207 (379)
T PF06025_consen 156 FLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKLFEIFTS 207 (379)
T ss_pred HHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHHHHHhCC
Confidence 988887 44 5566666678999999999999999999999999999964
No 134
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=95.04 E-value=1.1 Score=37.30 Aligned_cols=171 Identities=17% Similarity=0.167 Sum_probs=102.8
Q ss_pred HHHHHHHhcCCcchHHHHHhcC-c-HHHHHHHHhcC---CChHHHHHHHHHHHHhhCCchhHHHHHhc-C-CHHHHHHHh
Q 025930 50 AAGAIANLAMNETNQELIMTQG-G-IGLLSTTAANA---EDPQTLRMVAGAIANLCGNDKLQLKLRGE-G-GIKALLGMV 122 (246)
Q Consensus 50 a~~~L~~la~~~~~~~~i~~~g-~-i~~L~~ll~~~---~~~~~~~~a~~aL~~L~~~~~~~~~l~~~-g-~i~~L~~ll 122 (246)
+...++-+..++..-..+...+ + ...+..++... ..+..+..++++++|+..++..+..+... + .+-..+..+
T Consensus 83 ~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~ 162 (268)
T PF08324_consen 83 ALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSL 162 (268)
T ss_dssp HHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCC
T ss_pred HHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHH
Confidence 4445555566665555554433 2 34444444433 34666778999999999888888777643 2 333333333
Q ss_pred cCC----CHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcc-cC-CChhHHHHHHHHHHHhccCchh
Q 025930 123 RCG----HPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNS-NN-EASPIRRHIELALCHLAQHEVN 196 (246)
Q Consensus 123 ~~~----~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll-~~-~~~~v~~~a~~aL~~La~~~~~ 196 (246)
... +..++..++..+.|++..-... +.+.+.+ ...+..+...+ .. .++++...++.||++|...+..
T Consensus 163 ~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~--~~~~~~~-----~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~ 235 (268)
T PF08324_consen 163 LSSLLDSNKNVRIALATLLLNLSVLLHKN--RSDEEWQ-----SELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDS 235 (268)
T ss_dssp CTTS-HHHHHHHHHHHHHHHHHHHHHHHC--TS-CCHH-----HHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHH
T ss_pred hhccccccHHHHHHHHHHHHHHHHHHHhc--CCChHHH-----HHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChh
Confidence 333 6778889999999998631000 0011111 11345555533 22 5899999999999999986666
Q ss_pred HHHHHh-CCcHHHHHHHHhcCCHHHHHHHHHH
Q 025930 197 AKDMIS-GGALWELVRISRDCSREDIRTLAHR 227 (246)
Q Consensus 197 ~~~i~~-~g~i~~L~~ll~~~~~~~~~~~A~~ 227 (246)
.....+ -|....+........++.+++.+.+
T Consensus 236 ~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~e 267 (268)
T PF08324_consen 236 AKQLAKSLDVKSVLSKKANKSKEPRIKEVAAE 267 (268)
T ss_dssp HHHHCCCCTHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHcChHHHHHHHHhcccchHHHHHhcc
Confidence 566665 3555555555555666666666654
No 135
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=95.01 E-value=0.51 Score=36.93 Aligned_cols=83 Identities=17% Similarity=0.182 Sum_probs=64.2
Q ss_pred CCchhHHHHHhcCCHHHHHHHhcC---------CCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHh-CCChHHHHH
Q 025930 101 GNDKLQLKLRGEGGIKALLGMVRC---------GHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLID-DGALPWIVQ 170 (246)
Q Consensus 101 ~~~~~~~~l~~~g~i~~L~~ll~~---------~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~-~g~i~~Lv~ 170 (246)
......+.+++.||+..|+.+|.. .+.+....++.++..+.. +..+...+.. .+.+..|+.
T Consensus 95 ~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n---------~~~G~~~v~~~~~~v~~i~~ 165 (187)
T PF06371_consen 95 NPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMN---------TKYGLEAVLSHPDSVNLIAL 165 (187)
T ss_dssp S-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTS---------SHHHHHHHHCSSSHHHHHHH
T ss_pred CCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHc---------cHHHHHHHHcCcHHHHHHHH
Confidence 344667888899999999998851 345778888899998884 4577777775 678999999
Q ss_pred cccCCChhHHHHHHHHHHHhcc
Q 025930 171 NSNNEASPIRRHIELALCHLAQ 192 (246)
Q Consensus 171 ll~~~~~~v~~~a~~aL~~La~ 192 (246)
.+.+++..++..++..|..+|.
T Consensus 166 ~L~s~~~~~r~~~leiL~~lc~ 187 (187)
T PF06371_consen 166 SLDSPNIKTRKLALEILAALCL 187 (187)
T ss_dssp T--TTSHHHHHHHHHHHHHHHT
T ss_pred HHCCCCHHHHHHHHHHHHHHHC
Confidence 9999999999999999988873
No 136
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.91 E-value=0.49 Score=46.70 Aligned_cols=140 Identities=14% Similarity=0.069 Sum_probs=106.3
Q ss_pred CHHHHHHHhcC---CCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh-CCch
Q 025930 30 GLTSLLMLLGS---SEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC-GNDK 104 (246)
Q Consensus 30 ~i~~Li~ll~~---~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~-~~~~ 104 (246)
..|-++..++. ..||.+|..|.-+|+.+..- .+..+ ...|.|+.++...+++.++.++.-+++-|+ ..+.
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence 46777788754 24799999999999998543 32222 257899999997788999999999999988 4443
Q ss_pred hHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHH
Q 025930 105 LQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIE 184 (246)
Q Consensus 105 ~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~ 184 (246)
..+. .-+.|...|+.+++.+++.|.-+|..|-.. ..+--.|.++.++.++.+++++++..|-
T Consensus 995 lie~-----~T~~Ly~rL~D~~~~vRkta~lvlshLILn-------------dmiKVKGql~eMA~cl~D~~~~IsdlAk 1056 (1251)
T KOG0414|consen 995 LIEP-----WTEHLYRRLRDESPSVRKTALLVLSHLILN-------------DMIKVKGQLSEMALCLEDPNAEISDLAK 1056 (1251)
T ss_pred ccch-----hhHHHHHHhcCccHHHHHHHHHHHHHHHHh-------------hhhHhcccHHHHHHHhcCCcHHHHHHHH
Confidence 3222 245678888899999999999999998742 1222368899999999999999999988
Q ss_pred HHHHHhcc
Q 025930 185 LALCHLAQ 192 (246)
Q Consensus 185 ~aL~~La~ 192 (246)
.....|+.
T Consensus 1057 ~FF~Els~ 1064 (1251)
T KOG0414|consen 1057 SFFKELSS 1064 (1251)
T ss_pred HHHHHhhh
Confidence 66666654
No 137
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.89 E-value=0.43 Score=45.12 Aligned_cols=190 Identities=18% Similarity=0.119 Sum_probs=122.5
Q ss_pred CHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHH
Q 025930 30 GLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLK 108 (246)
Q Consensus 30 ~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~ 108 (246)
.++++.+.+.......-.-.+..++.||+.. +..|..+.+.-+++.+-..+.. +++..+..++..+.||...+....+
T Consensus 542 v~~~~~s~~~~d~~~~en~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~e-e~~~lqraa~e~~~NLl~~~~~~e~ 620 (748)
T KOG4151|consen 542 VVKPLDSALHNDEKGLENFEALEALTNLASISESDRQKILKEKALGKIEELMTE-ENPALQRAALESIINLLWSPLLYER 620 (748)
T ss_pred hhhhhcchhhhhHHHHHHHHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhc-ccHHHHHHHHHHHHHHHhhHHHHHH
Confidence 4566666654421111122388889999765 6778788887788877777666 5788999999999999987777655
Q ss_pred -HHh-cCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhH-HHHhCCChHHHHHcccCCChhHHHHHHH
Q 025930 109 -LRG-EGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRS-LLIDDGALPWIVQNSNNEASPIRRHIEL 185 (246)
Q Consensus 109 -l~~-~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~-~l~~~g~i~~Lv~ll~~~~~~v~~~a~~ 185 (246)
+++ ....+.....+...++.....+++++..+..- +...+. ...-......++.++.+++++++...+.
T Consensus 621 si~e~~~~l~~w~~~~e~~~E~~~lA~a~a~a~I~sv--------~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~ 692 (748)
T KOG4151|consen 621 SIVEYKDRLKLWNLNLEVADEKFELAGAGALAAITSV--------VENHCSRILELLEWLEILVRAIQDEDDEIQHRGLV 692 (748)
T ss_pred HhhccccCchHHHHHHHhhhhHHhhhccccccchhhc--------chhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhh
Confidence 445 34667666666655555666666666644321 112222 2333456788999999999999999999
Q ss_pred HHHHhcc-CchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 025930 186 ALCHLAQ-HEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTL 229 (246)
Q Consensus 186 aL~~La~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L 229 (246)
.+.|+.. ..+....+......+.+..+-+. .....++.+...|
T Consensus 693 ~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~~-~~a~~~~~~~~~l 736 (748)
T KOG4151|consen 693 IILNLFEALFEIAEKIFETEVMELLSGLQKL-NRAPKREDAAPCL 736 (748)
T ss_pred hhhhHHHHHHHHHHHhccchHHHHHHHHHHh-hhhhhhhhhhhHH
Confidence 9999765 44555556555555555555442 3333444444444
No 138
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=94.87 E-value=0.051 Score=29.41 Aligned_cols=28 Identities=29% Similarity=0.412 Sum_probs=24.3
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q 025930 31 LTSLLMLLGSSEDETIHRVAAGAIANLAM 59 (246)
Q Consensus 31 i~~Li~ll~~~~~~~~~~~a~~~L~~la~ 59 (246)
+|.++++++++ ++.+|..|+.+|++++.
T Consensus 2 lp~l~~~l~D~-~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDP-SPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-S-SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCC-CHHHHHHHHHHHHHHHh
Confidence 78999999986 89999999999999865
No 139
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.76 E-value=0.92 Score=42.67 Aligned_cols=111 Identities=13% Similarity=0.068 Sum_probs=79.8
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhcc
Q 025930 113 GGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQ 192 (246)
Q Consensus 113 g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~ 192 (246)
|.+..+++...+++..++..++..++-+.-+ ......-+-++....|..-+.+..|.||..|+.||+.+-.
T Consensus 85 ~~f~hlLRg~Eskdk~VRfrvlqila~l~d~---------~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~ 155 (892)
T KOG2025|consen 85 GTFYHLLRGTESKDKKVRFRVLQILALLSDE---------NAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQG 155 (892)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHhcc---------ccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhc
Confidence 4555666666688899999999999988831 1112222224566777777788899999999999999975
Q ss_pred CchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccChhHH
Q 025930 193 HEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSSPAFQ 236 (246)
Q Consensus 193 ~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~~~~ 236 (246)
++.+- +...+-.+..+++.++.+++|.+|.-.+...+++.
T Consensus 156 d~~de----e~~v~n~l~~liqnDpS~EVRRaaLsnI~vdnsTl 195 (892)
T KOG2025|consen 156 DPKDE----ECPVVNLLKDLIQNDPSDEVRRAALSNISVDNSTL 195 (892)
T ss_pred CCCCC----cccHHHHHHHHHhcCCcHHHHHHHHHhhccCcccc
Confidence 33221 12356678889999899999999998887655543
No 140
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=94.60 E-value=0.86 Score=37.80 Aligned_cols=172 Identities=13% Similarity=0.124 Sum_probs=107.6
Q ss_pred hhhHHhHhhccccccHHHHHHhCCHHHHHHHhcCCC----CHHHHHHHHHHHHHhcCC--cchHHHHHhcCcHHHHHHHH
Q 025930 7 NTISVKSEDIRAQSNQEKIVEAGGLTSLLMLLGSSE----DETIHRVAAGAIANLAMN--ETNQELIMTQGGIGLLSTTA 80 (246)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~i~~~g~i~~Li~ll~~~~----~~~~~~~a~~~L~~la~~--~~~~~~i~~~g~i~~L~~ll 80 (246)
+.++++.-.|.+++.|..++++.+.--|-..|+... -+.++-.+.++++.+.+. .+.-..+.+.+.+|..+..+
T Consensus 69 naLaLlQ~vAshpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~m 148 (262)
T PF04078_consen 69 NALALLQCVASHPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIM 148 (262)
T ss_dssp HHHHHHHHHHH-TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHH
T ss_pred HHHHHHHHHHcChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHH
Confidence 567777778999999999999998444444443321 144666689999999875 45556777889999999999
Q ss_pred hcCCChHHHHHHHHHHHHhhCCchhHHHHHhc--------CCHHHHHH-HhcCCCHHHHHHHHHHHHHhhcccccccccC
Q 025930 81 ANAEDPQTLRMVAGAIANLCGNDKLQLKLRGE--------GGIKALLG-MVRCGHPDVLAQVARGIANFAKCESRASTQG 151 (246)
Q Consensus 81 ~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~--------g~i~~L~~-ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~ 151 (246)
..+ ++-.+..|...+..+-.++..-..+.+. .++..++. +...+++.+.+.+++....|+ +
T Consensus 149 e~G-selSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLs---------d 218 (262)
T PF04078_consen 149 EFG-SELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLS---------D 218 (262)
T ss_dssp HHS--HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHT---------T
T ss_pred Hhc-cHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHc---------c
Confidence 985 4666667888888777666554443211 12233333 234678899999999999999 5
Q ss_pred ChhhhHHHHhCCChHHHHH-----cccCCChhHHHHHHHHHHHh
Q 025930 152 TKTGRSLLIDDGALPWIVQ-----NSNNEASPIRRHIELALCHL 190 (246)
Q Consensus 152 ~~~~~~~l~~~g~i~~Lv~-----ll~~~~~~v~~~a~~aL~~L 190 (246)
++..|+++.+ .+|..+. -+-.+|+.++.--...+.|+
T Consensus 219 nprar~aL~~--~LP~~Lrd~~f~~~l~~D~~~k~~l~qLl~nl 260 (262)
T PF04078_consen 219 NPRAREALRQ--CLPDQLRDGTFSNILKDDPSTKRWLQQLLSNL 260 (262)
T ss_dssp STTHHHHHHH--HS-GGGTSSTTTTGGCS-HHHHHHHHHHHHHT
T ss_pred CHHHHHHHHH--hCcHHHhcHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 5677877774 3443211 11123666665544444443
No 141
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=94.59 E-value=0.89 Score=38.87 Aligned_cols=186 Identities=13% Similarity=0.061 Sum_probs=124.4
Q ss_pred CHHHHHHHHHHHHHhcCCcchHHHHHhcCc-HHHHHHHHhcC-CChHHHHHHHHHHHHhhCCchhHHHHHh-cCCHHHHH
Q 025930 43 DETIHRVAAGAIANLAMNETNQELIMTQGG-IGLLSTTAANA-EDPQTLRMVAGAIANLCGNDKLQLKLRG-EGGIKALL 119 (246)
Q Consensus 43 ~~~~~~~a~~~L~~la~~~~~~~~i~~~g~-i~~L~~ll~~~-~~~~~~~~a~~aL~~L~~~~~~~~~l~~-~g~i~~L~ 119 (246)
++-.+-.|+.++.++..+.+.|..+-..+. -..++++++.. .+.+++=+.+-.++-|+-++.+.+-+-. .+.+.-|+
T Consensus 162 ~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dli 241 (432)
T COG5231 162 DFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDLI 241 (432)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 555677799999999999999987765443 33666777642 3467777888888988888887754432 23566667
Q ss_pred HHhcCC-CHHHHHHHHHHHHHhhcccccccc-------------------------------------------------
Q 025930 120 GMVRCG-HPDVLAQVARGIANFAKCESRAST------------------------------------------------- 149 (246)
Q Consensus 120 ~ll~~~-~~~~~~~a~~~L~nL~~~~~~~~~------------------------------------------------- 149 (246)
.+.+.. .+.+.+-+++++.|++...++.+.
T Consensus 242 ~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD~ 321 (432)
T COG5231 242 AIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFDN 321 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 777643 455777888888888753322222
Q ss_pred ----------cCC---------hhhhHHHHhCC--ChHHHHHcccCCChh-HHHHHHHHHHHhcc-CchhHHHHHhCCcH
Q 025930 150 ----------QGT---------KTGRSLLIDDG--ALPWIVQNSNNEASP-IRRHIELALCHLAQ-HEVNAKDMISGGAL 206 (246)
Q Consensus 150 ----------~~~---------~~~~~~l~~~g--~i~~Lv~ll~~~~~~-v~~~a~~aL~~La~-~~~~~~~i~~~g~i 206 (246)
.++ ..+-+.+.+.+ .+..|..+++..++. .-..||.-|..+.. .|+.+..+...|+-
T Consensus 322 Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k 401 (432)
T COG5231 322 YLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVK 401 (432)
T ss_pred HHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhH
Confidence 000 23344444333 366777777766554 33445666666654 88899999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 025930 207 WELVRISRDCSREDIRTLAHRTL 229 (246)
Q Consensus 207 ~~L~~ll~~~~~~~~~~~A~~~L 229 (246)
..++.++. .++++++-.|..++
T Consensus 402 ~~im~L~n-h~d~~VkfeAl~a~ 423 (432)
T COG5231 402 EIIMNLIN-HDDDDVKFEALQAL 423 (432)
T ss_pred HHHHHHhc-CCCchhhHHHHHHH
Confidence 99999998 45566676666655
No 142
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.48 E-value=1.6 Score=41.08 Aligned_cols=106 Identities=16% Similarity=0.085 Sum_probs=70.1
Q ss_pred HhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhH
Q 025930 27 EAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQ 106 (246)
Q Consensus 27 ~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~ 106 (246)
-+|.+..++.-..+. +-.++..++..|..+.........-+-.+....+..-+.+ ..+.++.+|..+|+.+=.++..-
T Consensus 83 V~~~f~hlLRg~Esk-dk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~D-rep~VRiqAv~aLsrlQ~d~~de 160 (892)
T KOG2025|consen 83 VAGTFYHLLRGTESK-DKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKD-REPNVRIQAVLALSRLQGDPKDE 160 (892)
T ss_pred HHHHHHHHHhcccCc-chhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhc-cCchHHHHHHHHHHHHhcCCCCC
Confidence 356677777777765 6778888899988887753333333333445555555555 34789999999999987433221
Q ss_pred HHHHhcCCHHHHHHHhc-CCCHHHHHHHHHHHHHhh
Q 025930 107 LKLRGEGGIKALLGMVR-CGHPDVLAQVARGIANFA 141 (246)
Q Consensus 107 ~~l~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~nL~ 141 (246)
+..++..+..+++ .++++++..|+ .|++
T Consensus 161 ----e~~v~n~l~~liqnDpS~EVRRaaL---snI~ 189 (892)
T KOG2025|consen 161 ----ECPVVNLLKDLIQNDPSDEVRRAAL---SNIS 189 (892)
T ss_pred ----cccHHHHHHHHHhcCCcHHHHHHHH---Hhhc
Confidence 2245677888887 56788888776 5555
No 143
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.47 E-value=0.45 Score=44.38 Aligned_cols=131 Identities=17% Similarity=0.181 Sum_probs=87.0
Q ss_pred CHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHh-cCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHH
Q 025930 30 GLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMT-QGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLK 108 (246)
Q Consensus 30 ~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~-~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~ 108 (246)
.+|+++++++++ .|.++.+|..++-..-.... +..+.. ...++.+..+..+ ++++++++.|.++..|.....-+-.
T Consensus 175 mipkfl~f~~h~-spkiRs~A~~cvNq~i~~~~-qal~~~iD~Fle~lFalanD-~~~eVRk~vC~alv~Llevr~dkl~ 251 (885)
T KOG2023|consen 175 MIPKFLQFFKHP-SPKIRSHAVGCVNQFIIIQT-QALYVHIDKFLEILFALAND-EDPEVRKNVCRALVFLLEVRPDKLV 251 (885)
T ss_pred hHHHHHHHHhCC-ChhHHHHHHhhhhheeecCc-HHHHHHHHHHHHHHHHHccC-CCHHHHHHHHHHHHHHHHhcHHhcc
Confidence 489999999997 88899998888876655432 222222 2356677777765 6899999999999988732211111
Q ss_pred HHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHh--CCChHHHHHcc
Q 025930 109 LRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLID--DGALPWIVQNS 172 (246)
Q Consensus 109 l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~--~g~i~~Lv~ll 172 (246)
=.-.+++.-++..-...++++.-.|+.....++.. +..++.+.. ...+|.|++-+
T Consensus 252 phl~~IveyML~~tqd~dE~VALEACEFwla~aeq---------pi~~~~L~p~l~kliPvLl~~M 308 (885)
T KOG2023|consen 252 PHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQ---------PICKEVLQPYLDKLIPVLLSGM 308 (885)
T ss_pred cchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcC---------cCcHHHHHHHHHHHHHHHHccC
Confidence 11224566677777788889999999888888853 233443332 24677776644
No 144
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.37 E-value=1.7 Score=41.15 Aligned_cols=192 Identities=16% Similarity=0.109 Sum_probs=122.3
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhC--Cc---hh
Q 025930 32 TSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCG--ND---KL 105 (246)
Q Consensus 32 ~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~--~~---~~ 105 (246)
+...+.-++ .|..++..|..+|..+..- .+.-..-.+...+.+-+.-+++ +++++..++...=+++|. .+ +.
T Consensus 220 qvvcEatq~-~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks-~~deValQaiEFWsticeEEiD~~~e~ 297 (859)
T KOG1241|consen 220 QVVCEATQS-PDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKS-DNDEVALQAIEFWSTICEEEIDLAIEY 297 (859)
T ss_pred eeeeecccC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444 4788888899999998544 4444444444456666677776 678888888888888871 11 11
Q ss_pred HHH-----------HH---hcCCHHHHHHHhcC-------CCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCC
Q 025930 106 QLK-----------LR---GEGGIKALLGMVRC-------GHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGA 164 (246)
Q Consensus 106 ~~~-----------l~---~~g~i~~L~~ll~~-------~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~ 164 (246)
.+. +. -.+++|.|+.+|-. ++..+.+.|-..|.-++. -.++.|+. -+
T Consensus 298 ~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~-----------~~~D~Iv~-~V 365 (859)
T KOG1241|consen 298 GEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQ-----------CVGDDIVP-HV 365 (859)
T ss_pred HHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHH-----------Hhcccchh-hh
Confidence 111 11 12567888888853 123344555444544442 22223333 57
Q ss_pred hHHHHHcccCCChhHHHHHHHHHHHhccCch-hHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccChhHHHH
Q 025930 165 LPWIVQNSNNEASPIRRHIELALCHLAQHEV-NAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSSPAFQAE 238 (246)
Q Consensus 165 i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~~-~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~~~~~e 238 (246)
+|++-+-+++++=+-|+.++.+++..-..++ .+-.=+..++++.++.++.+ +.--++..+.+++.-+-++-+|
T Consensus 366 l~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D-~sl~VkdTaAwtlgrI~d~l~e 439 (859)
T KOG1241|consen 366 LPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSD-PSLWVKDTAAWTLGRIADFLPE 439 (859)
T ss_pred HHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcC-chhhhcchHHHHHHHHHhhchh
Confidence 8888888988999999999999999877444 34444556799999999994 4445568888888765554443
No 145
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.31 E-value=0.7 Score=43.58 Aligned_cols=91 Identities=18% Similarity=0.191 Sum_probs=67.1
Q ss_pred ChHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCC
Q 025930 85 DPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGA 164 (246)
Q Consensus 85 ~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~ 164 (246)
++.++..|.+.+..+ ..+.....+ ..++.+.++++++.+++.++..+.++= +...+.....|.
T Consensus 99 np~iR~lAlrtm~~l-~v~~i~ey~-----~~Pl~~~l~d~~~yvRktaa~~vakl~-----------~~~~~~~~~~gl 161 (734)
T KOG1061|consen 99 NPLIRALALRTMGCL-RVDKITEYL-----CDPLLKCLKDDDPYVRKTAAVCVAKLF-----------DIDPDLVEDSGL 161 (734)
T ss_pred CHHHHHHHhhceeeE-eehHHHHHH-----HHHHHHhccCCChhHHHHHHHHHHHhh-----------cCChhhccccch
Confidence 455554444443322 333333333 578999999999999999998888776 244555667899
Q ss_pred hHHHHHcccCCChhHHHHHHHHHHHhcc
Q 025930 165 LPWIVQNSNNEASPIRRHIELALCHLAQ 192 (246)
Q Consensus 165 i~~Lv~ll~~~~~~v~~~a~~aL~~La~ 192 (246)
++.|.+++.+.+|.|.-+|+.+|..+..
T Consensus 162 ~~~L~~ll~D~~p~VVAnAlaaL~eI~e 189 (734)
T KOG1061|consen 162 VDALKDLLSDSNPMVVANALAALSEIHE 189 (734)
T ss_pred hHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 9999999999999999999999999965
No 146
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=94.24 E-value=1 Score=40.56 Aligned_cols=104 Identities=18% Similarity=0.214 Sum_probs=79.4
Q ss_pred ccccHHHHHHhCCHHHHHHHhcCCC------CHHHHHHHHHHHHHhcCCcchH--HHHHhcCcHHHHHHHHhcCCChH--
Q 025930 18 AQSNQEKIVEAGGLTSLLMLLGSSE------DETIHRVAAGAIANLAMNETNQ--ELIMTQGGIGLLSTTAANAEDPQ-- 87 (246)
Q Consensus 18 ~~~~~~~i~~~g~i~~Li~ll~~~~------~~~~~~~a~~~L~~la~~~~~~--~~i~~~g~i~~L~~ll~~~~~~~-- 87 (246)
.-.||+.+-++=|.+-+=.+|.+.+ |..++..+..+|.-.+.+++.. +.++ +.||.|+.+++...|++
T Consensus 45 ~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pElAsh~~~v--~~IP~llev~~~~~d~d~e 122 (698)
T KOG2611|consen 45 VALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPELASHEEMV--SRIPLLLEVMSKGIDTDYE 122 (698)
T ss_pred hhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChhhccCHHHH--HhhhHHHHHHHhcCCCchh
Confidence 3457778889988888888887642 2224445788888888886543 2333 36999999998766655
Q ss_pred ----HHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhc
Q 025930 88 ----TLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVR 123 (246)
Q Consensus 88 ----~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~ 123 (246)
+.+.+..+|...++.+.....++..|+++.+..+-.
T Consensus 123 ~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~ 162 (698)
T KOG2611|consen 123 DNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYE 162 (698)
T ss_pred hhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHh
Confidence 788899999999988999999999999999986554
No 147
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.01 E-value=0.61 Score=44.03 Aligned_cols=148 Identities=14% Similarity=0.112 Sum_probs=91.1
Q ss_pred hCCHHHHHHHhcCCC------CHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhC
Q 025930 28 AGGLTSLLMLLGSSE------DETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCG 101 (246)
Q Consensus 28 ~g~i~~Li~ll~~~~------~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~ 101 (246)
.+.+|.|+++|...+ +....+.|..+|.-++..- +..|+. ..+|.+-+-+++ +|-.-++.++.|....-.
T Consensus 318 ~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~--~D~Iv~-~Vl~Fiee~i~~-pdwr~reaavmAFGSIl~ 393 (859)
T KOG1241|consen 318 QDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCV--GDDIVP-HVLPFIEENIQN-PDWRNREAAVMAFGSILE 393 (859)
T ss_pred hHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHh--cccchh-hhHHHHHHhcCC-cchhhhhHHHHHHHhhhc
Confidence 477899999997731 2224455555555443321 111221 223333345555 455566677777776653
Q ss_pred -CchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhC----CChHHHHHcccCCC
Q 025930 102 -NDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDD----GALPWIVQNSNNEA 176 (246)
Q Consensus 102 -~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~----g~i~~Lv~ll~~~~ 176 (246)
.+..+..=+..+++|.++.++..++-.++..++++|..++.. .-+..... +.++.++.=++ +.
T Consensus 394 gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~-----------l~e~~~n~~~l~~~l~~l~~gL~-De 461 (859)
T KOG1241|consen 394 GPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADF-----------LPEAIINQELLQSKLSALLEGLN-DE 461 (859)
T ss_pred CCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhh-----------chhhcccHhhhhHHHHHHHHHhh-hC
Confidence 334444434557899999999988888999999999998842 11222222 33444444443 58
Q ss_pred hhHHHHHHHHHHHhc
Q 025930 177 SPIRRHIELALCHLA 191 (246)
Q Consensus 177 ~~v~~~a~~aL~~La 191 (246)
|.+-.++||++.+|+
T Consensus 462 Prva~N~CWAf~~La 476 (859)
T KOG1241|consen 462 PRVASNVCWAFISLA 476 (859)
T ss_pred chHHHHHHHHHHHHH
Confidence 899999999999997
No 148
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.99 E-value=0.34 Score=45.02 Aligned_cols=183 Identities=18% Similarity=0.156 Sum_probs=99.1
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhC------Cchh-H
Q 025930 34 LLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCG------NDKL-Q 106 (246)
Q Consensus 34 Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~------~~~~-~ 106 (246)
|+.+.... |..++.+|+..|..|...-..-... ....++.+++ ++..+++.|..+++-..+ ..++ .
T Consensus 203 l~~~~~~~-D~~Vrt~A~eglL~L~eg~kL~~~~-----Y~~A~~~lsD-~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e 275 (823)
T KOG2259|consen 203 LIYLEHDQ-DFRVRTHAVEGLLALSEGFKLSKAC-----YSRAVKHLSD-DYEDVRKAAVQLVSVWGNRCPAPLERESEE 275 (823)
T ss_pred HHHHhcCC-CcchHHHHHHHHHhhcccccccHHH-----HHHHHHHhcc-hHHHHHHHHHHHHHHHHhcCCCcccchhhh
Confidence 55555554 5555666666665555432222222 2244556666 467788777655544331 1111 1
Q ss_pred HHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhc-------------------------------------ccccccc
Q 025930 107 LKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAK-------------------------------------CESRAST 149 (246)
Q Consensus 107 ~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~-------------------------------------~~~~~~~ 149 (246)
.++.+ .+...+.+.+...+..++..|+.+|+.+.. ..+++..
T Consensus 276 ~kl~D-~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~ 354 (823)
T KOG2259|consen 276 EKLKD-AAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWN 354 (823)
T ss_pred hhhHH-HHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCcccc
Confidence 12222 234455555555555555555544443321 1000000
Q ss_pred -----cCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhcc-CchhHHHHHhCCcHHHHHHHHhcCCHHHHHH
Q 025930 150 -----QGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQ-HEVNAKDMISGGALWELVRISRDCSREDIRT 223 (246)
Q Consensus 150 -----~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~ 223 (246)
..+++.-..++..|+-..+|.-+.++--+||++|+..++.|+. .+.-.. .++..|+.++. ++-+++|.
T Consensus 355 advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfN-DE~~~VRL 428 (823)
T KOG2259|consen 355 ADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFN-DEIEVVRL 428 (823)
T ss_pred ccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhc-cHHHHHHH
Confidence 0123444557777888888888887888999999999999987 343321 14566677665 45555666
Q ss_pred HHHHHHc
Q 025930 224 LAHRTLT 230 (246)
Q Consensus 224 ~A~~~L~ 230 (246)
-|.-+|.
T Consensus 429 ~ai~aL~ 435 (823)
T KOG2259|consen 429 KAIFALT 435 (823)
T ss_pred HHHHHHH
Confidence 5555554
No 149
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.91 E-value=1 Score=42.60 Aligned_cols=69 Identities=17% Similarity=0.091 Sum_probs=46.5
Q ss_pred HHHHHHH-hcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCC-ChhHHHHHHHHHHHhcc
Q 025930 115 IKALLGM-VRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNE-ASPIRRHIELALCHLAQ 192 (246)
Q Consensus 115 i~~L~~l-l~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~-~~~v~~~a~~aL~~La~ 192 (246)
|+.|+.. .++.+.++++.|..+|.-.+. +++ ...|..|.+|... ++.||.-++.+|+.-|.
T Consensus 556 ir~lLh~aVsD~nDDVrRaAVialGFVl~--------~dp---------~~~~s~V~lLses~N~HVRyGaA~ALGIaCA 618 (929)
T KOG2062|consen 556 IRRLLHVAVSDVNDDVRRAAVIALGFVLF--------RDP---------EQLPSTVSLLSESYNPHVRYGAAMALGIACA 618 (929)
T ss_pred HHHhhcccccccchHHHHHHHHHheeeEe--------cCh---------hhchHHHHHHhhhcChhhhhhHHHHHhhhhc
Confidence 4444444 234567777777777776654 223 3467778877554 89999999999999888
Q ss_pred CchhHHHH
Q 025930 193 HEVNAKDM 200 (246)
Q Consensus 193 ~~~~~~~i 200 (246)
...+++.+
T Consensus 619 GtG~~eAi 626 (929)
T KOG2062|consen 619 GTGLKEAI 626 (929)
T ss_pred CCCcHHHH
Confidence 66665443
No 150
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=93.90 E-value=1.1 Score=43.44 Aligned_cols=157 Identities=12% Similarity=0.091 Sum_probs=85.6
Q ss_pred CCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCc--chHHHHHh-cCcHH--------HHHHHHhcC-CC--hHHHHHHHH
Q 025930 29 GGLTSLLMLLGSSEDETIHRVAAGAIANLAMNE--TNQELIMT-QGGIG--------LLSTTAANA-ED--PQTLRMVAG 94 (246)
Q Consensus 29 g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~--~~~~~i~~-~g~i~--------~L~~ll~~~-~~--~~~~~~a~~ 94 (246)
+.-..+++.++++ .++++..|+.+|++++.+. ..-..+.+ ...=| .|...+.+. .| ....+..-.
T Consensus 857 e~~~~iieaf~sp-~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~ 935 (1233)
T KOG1824|consen 857 ELKDTIIEAFNSP-SEDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWA 935 (1233)
T ss_pred hhHHHHHHHcCCC-hHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 4445678999986 8889999999999998752 21111111 00000 111111111 11 011111222
Q ss_pred HHHHhh-CCchhHHHH-Hhc----------CCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhC
Q 025930 95 AIANLC-GNDKLQLKL-RGE----------GGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDD 162 (246)
Q Consensus 95 aL~~L~-~~~~~~~~l-~~~----------g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~ 162 (246)
.|++=| ..++..+-+ .++ ..+|.|-..++++.+..+..+..++.-.-.. .+.--+.+. .
T Consensus 936 lL~k~cE~~eegtR~vvAECLGkL~l~epesLlpkL~~~~~S~a~~~rs~vvsavKfsisd--------~p~~id~~l-k 1006 (1233)
T KOG1824|consen 936 LLFKHCECAEEGTRNVVAECLGKLVLIEPESLLPKLKLLLRSEASNTRSSVVSAVKFSISD--------QPQPIDPLL-K 1006 (1233)
T ss_pred HHHHhcccchhhhHHHHHHHhhhHHhCChHHHHHHHHHHhcCCCcchhhhhhheeeeeecC--------CCCccCHHH-H
Confidence 222223 122221111 111 1356666677788788777777777643321 122222222 2
Q ss_pred CChHHHHHcccCCChhHHHHHHHHHHHhccCch
Q 025930 163 GALPWIVQNSNNEASPIRRHIELALCHLAQHEV 195 (246)
Q Consensus 163 g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~~ 195 (246)
..+..+..++++++.+||..|+.++-.-++|..
T Consensus 1007 ~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKp 1039 (1233)
T KOG1824|consen 1007 QQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKP 1039 (1233)
T ss_pred HHHHHHHHHHhCCchhHHHHHHHHHHHHHccCH
Confidence 357788889999999999999999999988654
No 151
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=93.88 E-value=3.8 Score=35.18 Aligned_cols=189 Identities=13% Similarity=0.093 Sum_probs=106.3
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhc--CcHHHHHHHHhcCCChHHHHHHHHHHHHhhC---Cchh
Q 025930 31 LTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQ--GGIGLLSTTAANAEDPQTLRMVAGAIANLCG---NDKL 105 (246)
Q Consensus 31 i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~--g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~---~~~~ 105 (246)
+...|..+... ....|..+...|.++-......+.+.+. -.+..+...++++.. +-+..|+.++.-++. ..+.
T Consensus 45 L~~~Id~l~eK-~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~-~E~~lA~~~l~Ll~ltlg~g~~ 122 (309)
T PF05004_consen 45 LKEAIDLLTEK-SSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKS-EEQALAARALALLALTLGAGED 122 (309)
T ss_pred HHHHHHHHHhc-CHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCH-HHHHHHHHHHHHHhhhcCCCcc
Confidence 45556666654 5677888999998886553333333221 124566666776543 334467777777762 2344
Q ss_pred HHHHHhcCCHHHHHHHhcCCC--HHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChH--HHHHccc--------
Q 025930 106 QLKLRGEGGIKALLGMVRCGH--PDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALP--WIVQNSN-------- 173 (246)
Q Consensus 106 ~~~l~~~g~i~~L~~ll~~~~--~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~--~Lv~ll~-------- 173 (246)
...+++ ...|+|...+..++ +..+..++.+|+-+++.- -.+.+...... ..+. +.....+
T Consensus 123 ~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~-----~~d~~~~~~~~--~~le~if~~~~~~~~~~~~~~ 194 (309)
T PF05004_consen 123 SEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVG-----GSDEEETEELM--ESLESIFLLSILKSDGNAPVV 194 (309)
T ss_pred HHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhh-----cCChhHHHHHH--HHHHHHHHHHhcCcCCCcccc
Confidence 455554 35778888887543 445556666666655410 01122222111 1222 1111121
Q ss_pred --CCChhHHHHHHHHHHHhcc-Cchh-HHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 025930 174 --NEASPIRRHIELALCHLAQ-HEVN-AKDMISGGALWELVRISRDCSREDIRTLAHRTLTS 231 (246)
Q Consensus 174 --~~~~~v~~~a~~aL~~La~-~~~~-~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~ 231 (246)
.+++.+...|+.+-+-|.. -+.. .... -...++.|..++. +++..+|.+|.++|+.
T Consensus 195 ~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~-~~~~~~~l~~lL~-s~d~~VRiAAGEaiAl 254 (309)
T PF05004_consen 195 AAEDDAALVAAALSAWALLLTTLPDSKLEDL-LEEALPALSELLD-SDDVDVRIAAGEAIAL 254 (309)
T ss_pred cCCCccHHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHHHHHHhc-CCCHHHHHHHHHHHHH
Confidence 2245788888777666654 3331 2222 2346899999998 5678899999999974
No 152
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=93.84 E-value=0.39 Score=45.33 Aligned_cols=135 Identities=17% Similarity=0.167 Sum_probs=92.2
Q ss_pred CChHHHHHHHHHHHHhhCCchhH--HH-HHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHH
Q 025930 84 EDPQTLRMVAGAIANLCGNDKLQ--LK-LRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLI 160 (246)
Q Consensus 84 ~~~~~~~~a~~aL~~L~~~~~~~--~~-l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~ 160 (246)
..+.++++|+..+..++---..+ .. +...|+ .|...|..+.+++.-..+++++.++.- .+-..+.
T Consensus 811 ksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeeypEvLgsILgAikaI~nv----------igm~km~ 878 (1172)
T KOG0213|consen 811 KSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEYPEVLGSILGAIKAIVNV----------IGMTKMT 878 (1172)
T ss_pred CChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcccHHHHHHHHHHHHHHHHh----------ccccccC
Confidence 45778888888888776221111 22 223343 367777788899999988888887641 0000000
Q ss_pred --hCCChHHHHHcccCCChhHHHHHHHHHHHhcc-Cchh---HHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccChh
Q 025930 161 --DDGALPWIVQNSNNEASPIRRHIELALCHLAQ-HEVN---AKDMISGGALWELVRISRDCSREDIRTLAHRTLTSSPA 234 (246)
Q Consensus 161 --~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~-~~~~---~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~~ 234 (246)
-.+.+|.|..+|++.+..+++++...++.+|. .++. |+-|+ .--.|+++++ ..++.+|.+|..++.++.+
T Consensus 879 pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMR---IcfeLlelLk-ahkK~iRRaa~nTfG~Iak 954 (1172)
T KOG0213|consen 879 PPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMR---ICFELLELLK-AHKKEIRRAAVNTFGYIAK 954 (1172)
T ss_pred CChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHH-HHHHHHHHHHHhhhhHHHH
Confidence 14789999999999999999999999999987 3332 33333 3445778887 5678899999988887654
No 153
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.82 E-value=1.6 Score=41.49 Aligned_cols=118 Identities=8% Similarity=0.073 Sum_probs=76.8
Q ss_pred CChHHHHHHHHHHHHhhCC-chhHHHHHhc----------CCH----HHHHHHhcCCCHHHHHHHHHHHHHhhccccccc
Q 025930 84 EDPQTLRMVAGAIANLCGN-DKLQLKLRGE----------GGI----KALLGMVRCGHPDVLAQVARGIANFAKCESRAS 148 (246)
Q Consensus 84 ~~~~~~~~a~~aL~~L~~~-~~~~~~l~~~----------g~i----~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~ 148 (246)
++..++.-|+.+|..+-.+ +.|-+.+.-. .++ ..++++|+++|..+++.|.-...-|...
T Consensus 306 ~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~----- 380 (866)
T KOG1062|consen 306 SNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNE----- 380 (866)
T ss_pred CCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcc-----
Confidence 4577888899999888744 3333332111 111 2467788888888888888888777742
Q ss_pred ccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhcc--CchhH---HHH----------HhCCcHHHHHHHH
Q 025930 149 TQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQ--HEVNA---KDM----------ISGGALWELVRIS 213 (246)
Q Consensus 149 ~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~--~~~~~---~~i----------~~~g~i~~L~~ll 213 (246)
.+.. ..+..|+..|...+++.+...+.-+..++. .|+++ +.| +....+..+++++
T Consensus 381 -----~Nv~-----~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LI 450 (866)
T KOG1062|consen 381 -----SNVR-----VMVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLI 450 (866)
T ss_pred -----ccHH-----HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHH
Confidence 2222 234567777777799999999999999875 55542 111 2455677788888
Q ss_pred hcC
Q 025930 214 RDC 216 (246)
Q Consensus 214 ~~~ 216 (246)
.++
T Consensus 451 a~~ 453 (866)
T KOG1062|consen 451 ANA 453 (866)
T ss_pred hcC
Confidence 754
No 154
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=93.73 E-value=1.4 Score=40.75 Aligned_cols=129 Identities=19% Similarity=0.214 Sum_probs=81.9
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh-CCchhHHH
Q 025930 31 LTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC-GNDKLQLK 108 (246)
Q Consensus 31 i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~-~~~~~~~~ 108 (246)
...++..-+. ++..++-|+..+...-.+ ++.++.- +..++.++.+ +|..++.+|...|-.+| .+++...+
T Consensus 25 y~~il~~~kg--~~k~K~Laaq~I~kffk~FP~l~~~A-----i~a~~DLcED-ed~~iR~~aik~lp~~ck~~~~~v~k 96 (556)
T PF05918_consen 25 YKEILDGVKG--SPKEKRLAAQFIPKFFKHFPDLQEEA-----INAQLDLCED-EDVQIRKQAIKGLPQLCKDNPEHVSK 96 (556)
T ss_dssp HHHHHHGGGS---HHHHHHHHHHHHHHHCC-GGGHHHH-----HHHHHHHHT--SSHHHHHHHHHHGGGG--T--T-HHH
T ss_pred HHHHHHHccC--CHHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHhc-ccHHHHHHHHHhHHHHHHhHHHHHhH
Confidence 3445555553 566788899999999777 7666654 6788899998 68999999999999999 45677666
Q ss_pred HHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHccc---CCChhHHHHHHH
Q 025930 109 LRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSN---NEASPIRRHIEL 185 (246)
Q Consensus 109 l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~---~~~~~v~~~a~~ 185 (246)
+ +++|+.+|.++++.-...+-.+|..|-..+ + .+.+..|...+. .+++.+|+.++.
T Consensus 97 v-----aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d--------~--------k~tL~~lf~~i~~~~~~de~~Re~~lk 155 (556)
T PF05918_consen 97 V-----ADVLVQLLQTDDPVELDAVKNSLMSLLKQD--------P--------KGTLTGLFSQIESSKSGDEQVRERALK 155 (556)
T ss_dssp H-----HHHHHHHTT---HHHHHHHHHHHHHHHHH---------H--------HHHHHHHHHHHH---HS-HHHHHHHHH
T ss_pred H-----HHHHHHHHhcccHHHHHHHHHHHHHHHhcC--------c--------HHHHHHHHHHHHhcccCchHHHHHHHH
Confidence 6 678999999888776666666666665321 1 123333333332 456677777776
Q ss_pred HHH
Q 025930 186 ALC 188 (246)
Q Consensus 186 aL~ 188 (246)
.|.
T Consensus 156 Fl~ 158 (556)
T PF05918_consen 156 FLR 158 (556)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
No 155
>PRK14707 hypothetical protein; Provisional
Probab=93.52 E-value=2.7 Score=44.43 Aligned_cols=195 Identities=16% Similarity=0.130 Sum_probs=124.3
Q ss_pred hHHhHhhccccccHHHHHHhCCHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChH
Q 025930 9 ISVKSEDIRAQSNQEKIVEAGGLTSLLMLLGS-SEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQ 87 (246)
Q Consensus 9 ~~~~~~~~~~~~~~~~i~~~g~i~~Li~ll~~-~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~ 87 (246)
+.+-..+....+.++.+= .-++...++.|+. ++++.+...|...-..++.+++.+..+- ..|+.-.++-+++=++..
T Consensus 312 ~~la~rl~~d~~l~~~~~-~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~-~q~~a~~lNalsKWp~~~ 389 (2710)
T PRK14707 312 IALAERLADDPELCKALN-ARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLE-PQGVSSVLNALSKWPDTP 389 (2710)
T ss_pred HHHHHHHhccHhhhhccc-hHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccc-hhHHHHHHhhhhcCCCch
Confidence 334444555545443332 3334445555544 5455555555555567788887777765 346777778888766777
Q ss_pred HHHHHHHHHHH-hhCCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHH-hhcccccccccCChhhhHHHHhCCCh
Q 025930 88 TLRMVAGAIAN-LCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIAN-FAKCESRASTQGTKTGRSLLIDDGAL 165 (246)
Q Consensus 88 ~~~~a~~aL~~-L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~n-L~~~~~~~~~~~~~~~~~~l~~~g~i 165 (246)
....++.+|.. +..+++.++.+--.|+--.|-.+-+=++..+...++..|.. ++ ++.+.++.|--.++.
T Consensus 390 ~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la---------~d~~l~~~~~p~~va 460 (2710)
T PRK14707 390 VCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLA---------HDTELCKALDPINVT 460 (2710)
T ss_pred HHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHh---------ccHHHHhhcChHHHH
Confidence 77777777744 44777887777666655544444445677777778877775 45 567889888888888
Q ss_pred HHHHHcccCCChhHHHHHHHHHH-HhccCchhHHHHHhCCcHHHHHHHHh
Q 025930 166 PWIVQNSNNEASPIRRHIELALC-HLAQHEVNAKDMISGGALWELVRISR 214 (246)
Q Consensus 166 ~~Lv~ll~~~~~~v~~~a~~aL~-~La~~~~~~~~i~~~g~i~~L~~ll~ 214 (246)
..|-.+.+.++..++..+...|. .|+.+++.++.|--.+....|-.+.+
T Consensus 461 ~~LnalSKWPd~p~c~~aa~~La~~l~~~~~l~~a~~~q~~~~~L~aLSK 510 (2710)
T PRK14707 461 QALDALSKWPDTPICGQTASALAARLAHERRLRKALKPQEVVIALHSLSK 510 (2710)
T ss_pred HHHHHhhcCCCChhHHHHHHHHHHHhcccHHHHhhcCHHHHHHHHHHhhc
Confidence 88888888888888876665554 56767666666654444444444444
No 156
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.40 E-value=0.74 Score=45.50 Aligned_cols=136 Identities=15% Similarity=0.158 Sum_probs=99.3
Q ss_pred cHHHHHHHHhc---CCChHHHHHHHHHHHHhh-CCchhHHHHHhcCCHHHHHHHhc-CCCHHHHHHHHHHHHHhhccccc
Q 025930 72 GIGLLSTTAAN---AEDPQTLRMVAGAIANLC-GNDKLQLKLRGEGGIKALLGMVR-CGHPDVLAQVARGIANFAKCESR 146 (246)
Q Consensus 72 ~i~~L~~ll~~---~~~~~~~~~a~~aL~~L~-~~~~~~~~l~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~nL~~~~~~ 146 (246)
..|.+++.++. ..||+++..|.-||..+. -+.+.. + .-+|.|+..|. ++++-++.++.-+++-|+.+
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fc----e-s~l~llftimeksp~p~IRsN~VvalgDlav~--- 991 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFC----E-SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVR--- 991 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHH----H-HHHHHHHHHHhcCCCceeeecchheccchhhh---
Confidence 45666677743 357999999999999886 333221 1 23688999997 88999999999999988863
Q ss_pred ccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHH
Q 025930 147 ASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAH 226 (246)
Q Consensus 147 ~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~ 226 (246)
-+..-+ -.-+.|-+.+++.++.+|+.|..+|.+|-.+ ..+.-.|-+..+..++- ++++.++.+|.
T Consensus 992 -----fpnlie-----~~T~~Ly~rL~D~~~~vRkta~lvlshLILn----dmiKVKGql~eMA~cl~-D~~~~IsdlAk 1056 (1251)
T KOG0414|consen 992 -----FPNLIE-----PWTEHLYRRLRDESPSVRKTALLVLSHLILN----DMIKVKGQLSEMALCLE-DPNAEISDLAK 1056 (1251)
T ss_pred -----cccccc-----hhhHHHHHHhcCccHHHHHHHHHHHHHHHHh----hhhHhcccHHHHHHHhc-CCcHHHHHHHH
Confidence 122111 2356788888999999999999999999774 34445788888888887 56677888888
Q ss_pred HHHc
Q 025930 227 RTLT 230 (246)
Q Consensus 227 ~~L~ 230 (246)
...+
T Consensus 1057 ~FF~ 1060 (1251)
T KOG0414|consen 1057 SFFK 1060 (1251)
T ss_pred HHHH
Confidence 4443
No 157
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=93.26 E-value=0.61 Score=43.22 Aligned_cols=144 Identities=16% Similarity=0.121 Sum_probs=93.7
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhhCCch-h--HHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCCh
Q 025930 77 STTAANAEDPQTLRMVAGAIANLCGNDK-L--QLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTK 153 (246)
Q Consensus 77 ~~ll~~~~~~~~~~~a~~aL~~L~~~~~-~--~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~ 153 (246)
+.++++ ..+.+++.|+..+..|+---. + -+.+...|. .|..-+....+++.-..+.+++.+.+-- +-+
T Consensus 610 L~~L~~-k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv~------~~~ 680 (975)
T COG5181 610 LKLLRS-KPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSVH------RFR 680 (975)
T ss_pred HHHhcC-CCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhhh------ccc
Confidence 345555 457788888887777761111 1 122233333 3566667778999998888888876321 111
Q ss_pred hhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhcc-Cch---hHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 025930 154 TGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQ-HEV---NAKDMISGGALWELVRISRDCSREDIRTLAHRTL 229 (246)
Q Consensus 154 ~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~-~~~---~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L 229 (246)
..+-- -.|.+|.|..+|++.+..+..+....++.+|. .++ .|+-|+ .--.|+..++ +.++++|..|..++
T Consensus 681 ~mqpP--i~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~Lk-s~nKeiRR~A~~tf 754 (975)
T COG5181 681 SMQPP--ISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSLK-SWNKEIRRNATETF 754 (975)
T ss_pred ccCCc--hhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHH-HhhHHHHHhhhhhh
Confidence 11111 15889999999999999999999988888887 333 233333 3345677777 67788999999998
Q ss_pred ccChhH
Q 025930 230 TSSPAF 235 (246)
Q Consensus 230 ~~~~~~ 235 (246)
.++.+.
T Consensus 755 G~Is~a 760 (975)
T COG5181 755 GCISRA 760 (975)
T ss_pred hhHHhh
Confidence 876543
No 158
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=93.24 E-value=3.1 Score=40.65 Aligned_cols=121 Identities=11% Similarity=0.101 Sum_probs=73.5
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCC-ChhHHHHHHHHHHHhcc
Q 025930 114 GIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNE-ASPIRRHIELALCHLAQ 192 (246)
Q Consensus 114 ~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~-~~~v~~~a~~aL~~La~ 192 (246)
....++.-+.++...++++++.+|..++.+ .+.+.- .+.++.|+.-|.+. .+....--..+|..+|.
T Consensus 175 il~~l~~ql~s~R~aVrKkai~~l~~la~~-------~~~~ly-----~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r 242 (1233)
T KOG1824|consen 175 ILKCLLPQLQSPRLAVRKKAITALGHLASS-------CNRDLY-----VELIEHLLKGLSNRTQMSATRTYIQCLAAICR 242 (1233)
T ss_pred HHHHHhhcccChHHHHHHHHHHHHHHHHHh-------cCHHHH-----HHHHHHHHhccCCCCchHHHHHHHHHHHHHHH
Confidence 344555555677788999999999999863 122211 13455565555433 44444444566666655
Q ss_pred CchhHHHHHhCCcHHHHHHHHhc--CCHHHHHHHHHHHHc--------cChhHHHHHHHhhhcC
Q 025930 193 HEVNAKDMISGGALWELVRISRD--CSREDIRTLAHRTLT--------SSPAFQAEMRRLRIDY 246 (246)
Q Consensus 193 ~~~~~~~i~~~g~i~~L~~ll~~--~~~~~~~~~A~~~L~--------~~~~~~~e~~~~~~~~ 246 (246)
....|.----...++.+..++.. .++++.|+....++. .+..+-+|+-++-+.|
T Consensus 243 ~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~y 306 (1233)
T KOG1824|consen 243 QAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSY 306 (1233)
T ss_pred HhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHH
Confidence 43333332335688888998832 567788888777764 3555666766665544
No 159
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=93.16 E-value=4 Score=37.78 Aligned_cols=186 Identities=8% Similarity=0.005 Sum_probs=110.6
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHH--HHHHHHhcCCChHHHHHHHHHHHHhh-------CC
Q 025930 32 TSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIG--LLSTTAANAEDPQTLRMVAGAIANLC-------GN 102 (246)
Q Consensus 32 ~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~--~L~~ll~~~~~~~~~~~a~~aL~~L~-------~~ 102 (246)
..++.....+.....+.++..++++.+....-...+...+.+- +....++.+++..++-.++++|.+-+ .+
T Consensus 136 ~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~ 215 (858)
T COG5215 136 EEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCY 215 (858)
T ss_pred HHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3334444444345567778888988877754444444444433 22345566667778878888887722 22
Q ss_pred chhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHH
Q 025930 103 DKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRH 182 (246)
Q Consensus 103 ~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~ 182 (246)
++.+..+ +....+.-..++.+++..+.+.|+-+..- .-++-+...+.-......+.+++.++++...
T Consensus 216 E~erNy~-----mqvvceatq~~d~e~q~aafgCl~kim~L--------yY~fm~~ymE~aL~alt~~~mks~nd~va~q 282 (858)
T COG5215 216 EEERNYF-----MQVVCEATQGNDEELQHAAFGCLNKIMML--------YYKFMQSYMENALAALTGRFMKSQNDEVAIQ 282 (858)
T ss_pred hhhhchh-----heeeehhccCCcHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHhcCcchHHHHH
Confidence 3333333 44555666788999999999999977641 1133334444444555677889999999999
Q ss_pred HHHHHHHhccCc-hhHHHHH----------------hCCcHHHHHHHHhc------CCHHHHHHHHHHHHc
Q 025930 183 IELALCHLAQHE-VNAKDMI----------------SGGALWELVRISRD------CSREDIRTLAHRTLT 230 (246)
Q Consensus 183 a~~aL~~La~~~-~~~~~i~----------------~~g~i~~L~~ll~~------~~~~~~~~~A~~~L~ 230 (246)
+...-..+|..+ +..-.+. -+..+|.|+.++.. +++.....+|..+|-
T Consensus 283 avEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLq 353 (858)
T COG5215 283 AVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQ 353 (858)
T ss_pred HHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHH
Confidence 887665555411 1111111 12367888888854 234445566666663
No 160
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=92.83 E-value=0.93 Score=43.33 Aligned_cols=161 Identities=17% Similarity=0.155 Sum_probs=103.3
Q ss_pred ccccccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHH--HHHHHHhcCCChHHHHHHH
Q 025930 16 IRAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIG--LLSTTAANAEDPQTLRMVA 93 (246)
Q Consensus 16 ~~~~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~--~L~~ll~~~~~~~~~~~a~ 93 (246)
-.+++++..+++.||+..+...++..+....+..+.+.+.|++...+.+........+. .+-.++.+.++.+.--.++
T Consensus 500 ~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~ersY~~~ 579 (699)
T KOG3665|consen 500 DENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIERSYNAA 579 (699)
T ss_pred cCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhhHHHHHH
Confidence 34678899999999999999999988777788889999999987765554443322233 4434555544435555777
Q ss_pred HHHHHhhCCch-h---------HHHH--------------HhcCCHHH-HHHHhc-CCCHHHHHHHHHHHHHhhcccccc
Q 025930 94 GAIANLCGNDK-L---------QLKL--------------RGEGGIKA-LLGMVR-CGHPDVLAQVARGIANFAKCESRA 147 (246)
Q Consensus 94 ~aL~~L~~~~~-~---------~~~l--------------~~~g~i~~-L~~ll~-~~~~~~~~~a~~~L~nL~~~~~~~ 147 (246)
+.|+.+..+.+ . .+.+ .....+.+ ...+++ +..++.+--|..++.++..
T Consensus 580 siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~~~----- 654 (699)
T KOG3665|consen 580 SILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNVLE----- 654 (699)
T ss_pred HHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHHHH-----
Confidence 88877764321 1 1111 11122233 444454 4566777888889999884
Q ss_pred cccCChhhhHHHHhCCChHHHHHcccCC-ChhHHHHHH
Q 025930 148 STQGTKTGRSLLIDDGALPWIVQNSNNE-ASPIRRHIE 184 (246)
Q Consensus 148 ~~~~~~~~~~~l~~~g~i~~Lv~ll~~~-~~~v~~~a~ 184 (246)
.++++...+.+.|+++.+..+-... ...++..+.
T Consensus 655 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (699)
T KOG3665|consen 655 ---QNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAV 689 (699)
T ss_pred ---cChhhhhhhHhccchhhhhhcchhHHHHHHHHHHH
Confidence 4467888888899988887655332 333444433
No 161
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=92.79 E-value=3.1 Score=39.39 Aligned_cols=127 Identities=15% Similarity=0.069 Sum_probs=93.5
Q ss_pred CCHHHHHHHHHHHHHhc-CCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh--CCchhHHHHHhcCCHHHH
Q 025930 42 EDETIHRVAAGAIANLA-MNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC--GNDKLQLKLRGEGGIKAL 118 (246)
Q Consensus 42 ~~~~~~~~a~~~L~~la-~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~--~~~~~~~~l~~~g~i~~L 118 (246)
.|+.++..|.-.|..+. ...+... ...|.++..+.+.++|.++.+|.-.|..+. -|.. .... -.-|
T Consensus 908 sd~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~-~de~-----t~yL 976 (1128)
T COG5098 908 SDEELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTT-ADEH-----THYL 976 (1128)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCCCcceeccceeeccccceehhhh-hHHH-----HHHH
Confidence 58899999888888873 3322221 257889998987789999999998888775 2221 1111 2446
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhcc
Q 025930 119 LGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQ 192 (246)
Q Consensus 119 ~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~ 192 (246)
.+-|...+.++++.|..++.+|-.. ++- --.|-++.++.++.++|.++...|-..+..+|.
T Consensus 977 yrrL~De~~~V~rtclmti~fLila-----------gq~--KVKGqlg~ma~~L~deda~Isdmar~fft~~a~ 1037 (1128)
T COG5098 977 YRRLGDEDADVRRTCLMTIHFLILA-----------GQL--KVKGQLGKMALLLTDEDAEISDMARHFFTQIAK 1037 (1128)
T ss_pred HHHhcchhhHHHHHHHHHHHHHHHc-----------cce--eeccchhhhHhhccCCcchHHHHHHHHHHHHHh
Confidence 6677788899999999999988642 111 114778999999999999999999988888876
No 162
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.71 E-value=3.9 Score=36.96 Aligned_cols=139 Identities=9% Similarity=-0.011 Sum_probs=77.2
Q ss_pred CHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCC---chhHHHHHhcCCHHHH
Q 025930 43 DETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGN---DKLQLKLRGEGGIKAL 118 (246)
Q Consensus 43 ~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~---~~~~~~l~~~g~i~~L 118 (246)
+...+.-|++.|+|.+.. ++..+.... -.+..++--+.+..+.++.-.+..+|..+... ......+.+ +.-.+
T Consensus 271 ~a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~--ialrl 347 (533)
T KOG2032|consen 271 SAKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLN--IALRL 347 (533)
T ss_pred hhHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchh--HHHHH
Confidence 334555599999999887 432222221 12333333333435666766677777665532 222222222 33456
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHh--CCChHHHHHcccCCChhHHHHHHHHHHHhcc
Q 025930 119 LGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLID--DGALPWIVQNSNNEASPIRRHIELALCHLAQ 192 (246)
Q Consensus 119 ~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~--~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~ 192 (246)
..+..+.+++++.++..++..|+... ....+..+.+ .+...+++-.+++.+|.+ ..||+.....|.
T Consensus 348 R~l~~se~~~~R~aa~~Lfg~L~~l~-------g~~~e~~Fte~v~k~~~~lllhl~d~~p~v-a~ACr~~~~~c~ 415 (533)
T KOG2032|consen 348 RTLFDSEDDKMRAAAFVLFGALAKLA-------GGGWEEFFTEQVKKRLAPLLLHLQDPNPYV-ARACRSELRTCY 415 (533)
T ss_pred HHHHHhcChhhhhhHHHHHHHHHHHc-------CCCchhhhHHHHHhccccceeeeCCCChHH-HHHHHHHHHhcC
Confidence 66777889999999999888887531 1222332221 123345555666677765 445666555554
No 163
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=92.70 E-value=4.8 Score=36.46 Aligned_cols=155 Identities=14% Similarity=0.110 Sum_probs=96.8
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhhC----CchhHHHHHhcCCHHHHHHHhcCC-----CHH--HHHHHHHHHHHhhcccc
Q 025930 77 STTAANAEDPQTLRMVAGAIANLCG----NDKLQLKLRGEGGIKALLGMVRCG-----HPD--VLAQVARGIANFAKCES 145 (246)
Q Consensus 77 ~~ll~~~~~~~~~~~a~~aL~~L~~----~~~~~~~l~~~g~i~~L~~ll~~~-----~~~--~~~~a~~~L~nL~~~~~ 145 (246)
..+.+...|.+ +-.|+-....++. +..+++.+.+.=|.+-+-+++.++ .++ .+..++..|..+|..
T Consensus 17 ~~L~~~k~D~e-~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~-- 93 (698)
T KOG2611|consen 17 LKLLKGKRDEE-RFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV-- 93 (698)
T ss_pred HHHhcccChHH-HHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC--
Confidence 34444433433 3245555566662 345677788888888777887632 333 345666777788843
Q ss_pred cccccCChhh--hHHHHhCCChHHHHHcccCC-Chh------HHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcC
Q 025930 146 RASTQGTKTG--RSLLIDDGALPWIVQNSNNE-ASP------IRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDC 216 (246)
Q Consensus 146 ~~~~~~~~~~--~~~l~~~g~i~~Lv~ll~~~-~~~------v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~ 216 (246)
++. .+.++ +.||.|...+..+ +++ +-..+-.+|...+..+.+-..++..|+++.+.++....
T Consensus 94 -------pElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~ 164 (698)
T KOG2611|consen 94 -------PELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELP 164 (698)
T ss_pred -------hhhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCC
Confidence 222 22333 4589998888554 333 67778899999999999999999999999998877543
Q ss_pred CHHHHHHHHHHHHc-----------cChhHHHHHHHhh
Q 025930 217 SREDIRTLAHRTLT-----------SSPAFQAEMRRLR 243 (246)
Q Consensus 217 ~~~~~~~~A~~~L~-----------~~~~~~~e~~~~~ 243 (246)
+...-.++|...+- ..+.|-+-++++-
T Consensus 165 ~~~~d~alal~Vlll~~~~~~cw~e~~~~flali~~va 202 (698)
T KOG2611|consen 165 DGSHDMALALKVLLLLVSKLDCWSETIERFLALIAAVA 202 (698)
T ss_pred CCchhHHHHHHHHHHHHHhcccCcCCHHHHHHHHHHHH
Confidence 33222344443331 2555655555543
No 164
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.68 E-value=4.6 Score=38.24 Aligned_cols=121 Identities=11% Similarity=0.094 Sum_probs=66.8
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhc-ccccccccC
Q 025930 73 IGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAK-CESRASTQG 151 (246)
Q Consensus 73 i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~-~~~~~~~~~ 151 (246)
...++..++.+.|..+++.|+..|..+|..+ |.+.+ |.-|+..|.+-+..+++..+-=++-|+. +.. +..+
T Consensus 370 ~d~Ii~sLkterDvSirrravDLLY~mcD~~-Nak~I-----V~elLqYL~tAd~sireeivlKvAILaEKyAt--Dy~W 441 (938)
T KOG1077|consen 370 QDTIINSLKTERDVSIRRRAVDLLYAMCDVS-NAKQI-----VAELLQYLETADYSIREEIVLKVAILAEKYAT--DYSW 441 (938)
T ss_pred HHHHHHHhccccchHHHHHHHHHHHHHhchh-hHHHH-----HHHHHHHHhhcchHHHHHHHHHHHHHHHHhcC--Ccch
Confidence 4466677775678889999999999988544 44444 3446667766666665544433333332 100 0000
Q ss_pred Chhhh-H------HHHhCCChHHHHHcccCCChhHHHHHHHHHHHhccCchhHHHHHh
Q 025930 152 TKTGR-S------LLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQHEVNAKDMIS 202 (246)
Q Consensus 152 ~~~~~-~------~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~~~~~~i~~ 202 (246)
..+.- + ....+++-..+++..- ++++++.+|+..+...-..+...+.|+.
T Consensus 442 yVdviLqLiriagd~vsdeVW~RvvQiVv-Nnedlq~yaak~~fe~Lq~~a~hE~mVK 498 (938)
T KOG1077|consen 442 YVDVILQLIRIAGDYVSDEVWYRVVQIVV-NNEDLQGYAAKRLFEYLQKPACHENMVK 498 (938)
T ss_pred hHHHHHHHHHHhcccccHHHHHHhheeEe-cchhhhHHHHHHHHHHHhhhHHHHHHHH
Confidence 01110 1 1112334445555553 5788888888777766554555555554
No 165
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=92.66 E-value=1.1 Score=36.43 Aligned_cols=144 Identities=13% Similarity=0.041 Sum_probs=93.6
Q ss_pred HHHHHHHhcCCcchHHHHHhcCcHHHHHHH---Hh-cCCChHHHHHHHHHHHHhh--CCchhHHHHHhcCCHHHHHHHhc
Q 025930 50 AAGAIANLAMNETNQELIMTQGGIGLLSTT---AA-NAEDPQTLRMVAGAIANLC--GNDKLQLKLRGEGGIKALLGMVR 123 (246)
Q Consensus 50 a~~~L~~la~~~~~~~~i~~~g~i~~L~~l---l~-~~~~~~~~~~a~~aL~~L~--~~~~~~~~l~~~g~i~~L~~ll~ 123 (246)
|...|--++.+++.|..+.+...--.+... .+ +...+-++..+++.+..|. .++.....+....++|.+++.+.
T Consensus 120 aL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme 199 (315)
T COG5209 120 ALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIME 199 (315)
T ss_pred HHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHH
Confidence 344444558889999999876542222222 22 2234557888999999998 44566677788889999999998
Q ss_pred CCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHh--------CCChHHHHH-cccCCChhHHHHHHHHHHHhccCc
Q 025930 124 CGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLID--------DGALPWIVQ-NSNNEASPIRRHIELALCHLAQHE 194 (246)
Q Consensus 124 ~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~--------~g~i~~Lv~-ll~~~~~~v~~~a~~aL~~La~~~ 194 (246)
.+++--+.-++.++.-+- +++.+-+-+.+ ..++..++. +...+..++-+.+.++-..||.++
T Consensus 200 ~gSElSktvaifI~qkil---------~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p 270 (315)
T COG5209 200 LGSELSKTVAIFIFQKIL---------GDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKP 270 (315)
T ss_pred hhhHHHHHHHHHHHHHHh---------ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCH
Confidence 876655555665555444 33444333332 122333332 345567788899999999999988
Q ss_pred hhHHHHHh
Q 025930 195 VNAKDMIS 202 (246)
Q Consensus 195 ~~~~~i~~ 202 (246)
..|..+..
T Consensus 271 ~aR~lL~~ 278 (315)
T COG5209 271 HARALLSS 278 (315)
T ss_pred hHHHHHhc
Confidence 88776653
No 166
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=92.43 E-value=1.3 Score=31.20 Aligned_cols=86 Identities=15% Similarity=0.155 Sum_probs=60.6
Q ss_pred hHHhHhhccccccHHHHH-HhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChH
Q 025930 9 ISVKSEDIRAQSNQEKIV-EAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQ 87 (246)
Q Consensus 9 ~~~~~~~~~~~~~~~~i~-~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~ 87 (246)
-++...+...--....+. +.+.+..|+.|++.+ ++.....+...|..+..++.....+.+.|++..|.++-.. .++.
T Consensus 9 ~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~-~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~-~~~~ 86 (98)
T PF14726_consen 9 ESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFP-PVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPN-VEPN 86 (98)
T ss_pred HHHHHHHHhccccHHHHccHHHHHHHHHHHhCCC-CCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhc-CCHH
Confidence 334444433333344444 678899999999987 4446788899999999999999999999999997777654 4555
Q ss_pred HHHHHHHHH
Q 025930 88 TLRMVAGAI 96 (246)
Q Consensus 88 ~~~~a~~aL 96 (246)
.+...-..+
T Consensus 87 ~~~~id~il 95 (98)
T PF14726_consen 87 LQAEIDEIL 95 (98)
T ss_pred HHHHHHHHH
Confidence 554443333
No 167
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.36 E-value=3.3 Score=39.43 Aligned_cols=106 Identities=17% Similarity=0.147 Sum_probs=52.1
Q ss_pred HhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhH
Q 025930 27 EAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQ 106 (246)
Q Consensus 27 ~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~ 106 (246)
+...|+.+..+|.+. ++.+.-.|+..|.+++.++..-+.- ...++.++-+.+|..+.--...-|..+. +.+
T Consensus 241 ~~~~i~~i~~lL~st-ssaV~fEaa~tlv~lS~~p~alk~A-----a~~~i~l~~kesdnnvklIvldrl~~l~--~~~- 311 (948)
T KOG1058|consen 241 KARYIRCIYNLLSST-SSAVIFEAAGTLVTLSNDPTALKAA-----ASTYIDLLVKESDNNVKLIVLDRLSELK--ALH- 311 (948)
T ss_pred hhHHHHHHHHHHhcC-CchhhhhhcceEEEccCCHHHHHHH-----HHHHHHHHHhccCcchhhhhHHHHHHHh--hhh-
Confidence 344577777888775 6666777777777777765322221 2233343333333333222222222222 111
Q ss_pred HHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 025930 107 LKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAK 142 (246)
Q Consensus 107 ~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~ 142 (246)
+.+.+ |.+--++++|++++-++++++.....-|+.
T Consensus 312 ~~il~-~l~mDvLrvLss~dldvr~Ktldi~ldLvs 346 (948)
T KOG1058|consen 312 EKILQ-GLIMDVLRVLSSPDLDVRSKTLDIALDLVS 346 (948)
T ss_pred HHHHH-HHHHHHHHHcCcccccHHHHHHHHHHhhhh
Confidence 11111 223334556666666666666666555553
No 168
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=92.34 E-value=7.9 Score=34.60 Aligned_cols=191 Identities=20% Similarity=0.190 Sum_probs=113.4
Q ss_pred CCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCC----ChHHHHHHHHHHHHhh-CCc
Q 025930 29 GGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAE----DPQTLRMVAGAIANLC-GND 103 (246)
Q Consensus 29 g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~----~~~~~~~a~~aL~~L~-~~~ 103 (246)
..++.++.+..+.+++..+..++..++.+...-.....+- +.+..+..-..+.. .....+...|....+. .+.
T Consensus 189 ~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~--~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~ 266 (415)
T PF12460_consen 189 ELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLD--EFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGH 266 (415)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHH--HHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCC
Confidence 3788899988887777778888888888875511111111 12333332221111 2334445556666665 333
Q ss_pred hhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcc-ccccccc----CChhhhHHHHhCCChHHHHHcccCCChh
Q 025930 104 KLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKC-ESRASTQ----GTKTGRSLLIDDGALPWIVQNSNNEASP 178 (246)
Q Consensus 104 ~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~-~~~~~~~----~~~~~~~~l~~~g~i~~Lv~ll~~~~~~ 178 (246)
.....+ +..|+.++.+ +++...++..+.-+... ++..... -..-+|+++... .+|.|++-.++.+.+
T Consensus 267 ~~~~~~-----~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~-~~p~L~~~~~~~~~~ 338 (415)
T PF12460_consen 267 PLATEL-----LDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQ-VLPKLLEGFKEADDE 338 (415)
T ss_pred chHHHH-----HHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHH-HHHHHHHHHhhcChh
Confidence 222222 4557777776 56778888888877742 1111100 012335555533 688888888888888
Q ss_pred HHHHHHHHHHHhccCchhHHHHHh--CCcHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 025930 179 IRRHIELALCHLAQHEVNAKDMIS--GGALWELVRISRDCSREDIRTLAHRTLTS 231 (246)
Q Consensus 179 v~~~a~~aL~~La~~~~~~~~i~~--~g~i~~L~~ll~~~~~~~~~~~A~~~L~~ 231 (246)
.+..-+.+|.++-.+-.. ..+.. ...+|.|++-+. .++.+++..+..+|..
T Consensus 339 ~k~~yL~ALs~ll~~vP~-~vl~~~l~~LlPLLlqsL~-~~~~~v~~s~L~tL~~ 391 (415)
T PF12460_consen 339 IKSNYLTALSHLLKNVPK-SVLLPELPTLLPLLLQSLS-LPDADVLLSSLETLKM 391 (415)
T ss_pred hHHHHHHHHHHHHhhCCH-HHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 888889999999663332 22222 357777888886 4455688888888863
No 169
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=92.29 E-value=4.7 Score=39.11 Aligned_cols=154 Identities=15% Similarity=0.100 Sum_probs=106.8
Q ss_pred CCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHh-cCCChHHHHHHHHHHHHhhCCchhHH
Q 025930 29 GGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAA-NAEDPQTLRMVAGAIANLCGNDKLQL 107 (246)
Q Consensus 29 g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~-~~~~~~~~~~a~~aL~~L~~~~~~~~ 107 (246)
+++.-|+++.... ...+...-..+|...+.-+.......+....|.++.+.. ..+||.+...+-..+..++....|..
T Consensus 530 ~ild~L~qlas~~-s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g 608 (1005)
T KOG2274|consen 530 MILDGLLQLASKS-SDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYG 608 (1005)
T ss_pred HHHHHHHHHcccc-cHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhc
Confidence 4566777776655 344555567778877666656666667777888777654 44688888888888888887666665
Q ss_pred HHHhcCCHHHHHHHhcCCC----HHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHH-cccCCChhHHHH
Q 025930 108 KLRGEGGIKALLGMVRCGH----PDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQ-NSNNEASPIRRH 182 (246)
Q Consensus 108 ~l~~~g~i~~L~~ll~~~~----~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~-ll~~~~~~v~~~ 182 (246)
.+.+ -.+|.++..|..+. ..+...++..|..+..+ ..+..-+.+... ++|++.+ .++.++..+-.+
T Consensus 609 ~m~e-~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~-------tp~pL~~~l~~~-~FpaVak~tlHsdD~~tlQ~ 679 (1005)
T KOG2274|consen 609 PMQE-RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRN-------TPSPLPNLLICY-AFPAVAKITLHSDDHETLQN 679 (1005)
T ss_pred chHH-HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhc-------CCCCccHHHHHH-HhHHhHhheeecCChHHHHh
Confidence 5543 46899999998664 66777788777766653 123344445433 5776666 457778888889
Q ss_pred HHHHHHHhcc
Q 025930 183 IELALCHLAQ 192 (246)
Q Consensus 183 a~~aL~~La~ 192 (246)
+-.||..+-+
T Consensus 680 ~~EcLra~Is 689 (1005)
T KOG2274|consen 680 ATECLRALIS 689 (1005)
T ss_pred HHHHHHHHHh
Confidence 9999998855
No 170
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=92.13 E-value=2.8 Score=37.45 Aligned_cols=110 Identities=13% Similarity=0.103 Sum_probs=73.4
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhCC-chh-------------HHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHH
Q 025930 73 IGLLSTTAANAEDPQTLRMVAGAIANLCGN-DKL-------------QLKLRGEGGIKALLGMVRCGHPDVLAQVARGIA 138 (246)
Q Consensus 73 i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~-~~~-------------~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~ 138 (246)
+..|+.++.+ +++...++.++.-+..+ ++. ++++... .+|.++...+..+.+.+.+-..+|.
T Consensus 273 ~~~L~~lL~~---~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~-~~p~L~~~~~~~~~~~k~~yL~ALs 348 (415)
T PF12460_consen 273 LDKLLELLSS---PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQ-VLPKLLEGFKEADDEIKSNYLTALS 348 (415)
T ss_pred HHHHHHHhCC---hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHH-HHHHHHHHHhhcChhhHHHHHHHHH
Confidence 3345555554 55677778777777644 222 4444432 5778888877766668888888888
Q ss_pred HhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhccCc
Q 025930 139 NFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQHE 194 (246)
Q Consensus 139 nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~ 194 (246)
++..+ .|...-.---...+|.+++-+.-++++++..++.+|..+..+.
T Consensus 349 ~ll~~--------vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 349 HLLKN--------VPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHhh--------CCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 88753 1211111111347899999999999999999999999987743
No 171
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=92.08 E-value=7.1 Score=34.27 Aligned_cols=93 Identities=18% Similarity=0.199 Sum_probs=65.8
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHh-hCCchhHHHH
Q 025930 31 LTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANL-CGNDKLQLKL 109 (246)
Q Consensus 31 i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L-~~~~~~~~~l 109 (246)
+..+++-++++....+++.++--|+.-+.++.-+..+.++|.+..+++.+....+..+...++.++..+ +.+..+-..+
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l~ 102 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHLL 102 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhhh
Confidence 677777777555566777788888888899999999999999999998886534333444444444444 4555444445
Q ss_pred HhcCCHHHHHHHhc
Q 025930 110 RGEGGIKALLGMVR 123 (246)
Q Consensus 110 ~~~g~i~~L~~ll~ 123 (246)
.+.+....++.++.
T Consensus 103 ~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 103 LDRDSLRLLLKLLK 116 (361)
T ss_pred hchhHHHHHHHHhc
Confidence 56667777788887
No 172
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=91.95 E-value=2.8 Score=38.82 Aligned_cols=94 Identities=18% Similarity=0.182 Sum_probs=64.3
Q ss_pred ChHHHHHHHHHHHHhh-CCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCC
Q 025930 85 DPQTLRMVAGAIANLC-GNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDG 163 (246)
Q Consensus 85 ~~~~~~~a~~aL~~L~-~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g 163 (246)
+.+....|+..+.... ..|+.+... +..++++..+++..++..|+..|-.+|. ++++... .
T Consensus 35 ~~k~K~Laaq~I~kffk~FP~l~~~A-----i~a~~DLcEDed~~iR~~aik~lp~~ck--------~~~~~v~-----k 96 (556)
T PF05918_consen 35 SPKEKRLAAQFIPKFFKHFPDLQEEA-----INAQLDLCEDEDVQIRKQAIKGLPQLCK--------DNPEHVS-----K 96 (556)
T ss_dssp -HHHHHHHHHHHHHHHCC-GGGHHHH-----HHHHHHHHT-SSHHHHHHHHHHGGGG----------T--T-HH-----H
T ss_pred CHHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHhcccHHHHHHHHHhHHHHHH--------hHHHHHh-----H
Confidence 5778888888888776 778887665 5679999999999999999999999995 2334333 3
Q ss_pred ChHHHHHcccCCChhHHHHHHHHHHHhcc-Cchh
Q 025930 164 ALPWIVQNSNNEASPIRRHIELALCHLAQ-HEVN 196 (246)
Q Consensus 164 ~i~~Lv~ll~~~~~~v~~~a~~aL~~La~-~~~~ 196 (246)
+...|+++|..+++......-.+|..|-. ++..
T Consensus 97 vaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~ 130 (556)
T PF05918_consen 97 VADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKG 130 (556)
T ss_dssp HHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHH
Confidence 56789999999988777777777776643 4443
No 173
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=91.93 E-value=4.6 Score=39.19 Aligned_cols=134 Identities=13% Similarity=0.188 Sum_probs=83.2
Q ss_pred HHHHhcCcHHHHHHHHhcCCC----hHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhc----CCC----HHHHHH
Q 025930 65 ELIMTQGGIGLLSTTAANAED----PQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVR----CGH----PDVLAQ 132 (246)
Q Consensus 65 ~~i~~~g~i~~L~~ll~~~~~----~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~----~~~----~~~~~~ 132 (246)
..+.+.||+..++.++.+..+ .......+..|...+.-+.|++++.+.|+++.|++.+. .+. .++.+.
T Consensus 111 ~v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~ 190 (802)
T PF13764_consen 111 SVLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQ 190 (802)
T ss_pred HHhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHH
Confidence 345678999999988876333 45666777888888888999999999999999999884 333 455555
Q ss_pred HHHHHHHhhcccccccccCChhhhHHHHhC-------CChHHHHHcccCC----ChhHHHHHHHHHHHhccCchh-HHHH
Q 025930 133 VARGIANFAKCESRASTQGTKTGRSLLIDD-------GALPWIVQNSNNE----ASPIRRHIELALCHLAQHEVN-AKDM 200 (246)
Q Consensus 133 a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~-------g~i~~Lv~ll~~~----~~~v~~~a~~aL~~La~~~~~-~~~i 200 (246)
...++..+....+.... .......... .-+..|++.+... ++.+....++.|-.|+..... .+.+
T Consensus 191 LL~IiE~ll~ea~~~~~---~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~L 267 (802)
T PF13764_consen 191 LLEIIESLLSEANSSSS---SESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDAL 267 (802)
T ss_pred HHHHHHHHHHHHhhhhh---hhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHH
Confidence 55555544421100000 0000000001 1255555555443 688888999999999985443 3444
Q ss_pred H
Q 025930 201 I 201 (246)
Q Consensus 201 ~ 201 (246)
+
T Consensus 268 v 268 (802)
T PF13764_consen 268 V 268 (802)
T ss_pred H
Confidence 3
No 174
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=91.84 E-value=3.6 Score=38.70 Aligned_cols=171 Identities=18% Similarity=0.141 Sum_probs=94.9
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcCC--cchHHHHHhcCcHHHHHHHHhc---CCChHHHHHHHHHHHHhh----C
Q 025930 31 LTSLLMLLGSSEDETIHRVAAGAIANLAMN--ETNQELIMTQGGIGLLSTTAAN---AEDPQTLRMVAGAIANLC----G 101 (246)
Q Consensus 31 i~~Li~ll~~~~~~~~~~~a~~~L~~la~~--~~~~~~i~~~g~i~~L~~ll~~---~~~~~~~~~a~~aL~~L~----~ 101 (246)
+..+.+++.+..-. ...|...|..+... ....+.+ ..+..++++ ..++.+...|.-++..+. .
T Consensus 397 v~~i~~~I~~~~~~--~~ea~~~l~~l~~~~~~Pt~e~l------~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~ 468 (618)
T PF01347_consen 397 VKFIKDLIKSKKLT--DDEAAQLLASLPFHVRRPTEELL------KELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV 468 (618)
T ss_dssp HHHHHHHHHTT-S---HHHHHHHHHHHHHT-----HHHH------HHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCC--HHHHHHHHHHHHhhcCCCCHHHH------HHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence 77777888774222 34456667666443 2233332 233333332 234667767776666665 2
Q ss_pred Cc------hhHHHHHhcCCHHHHHHHhc----CCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHc
Q 025930 102 ND------KLQLKLRGEGGIKALLGMVR----CGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQN 171 (246)
Q Consensus 102 ~~------~~~~~l~~~g~i~~L~~ll~----~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~l 171 (246)
.. ......+....++.+...+. .++.+-+..++.+|+|+.. ...++.|..+
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~-------------------~~~i~~l~~~ 529 (618)
T PF01347_consen 469 NSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH-------------------PESIPVLLPY 529 (618)
T ss_dssp T-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT--------------------GGGHHHHHTT
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC-------------------chhhHHHHhH
Confidence 21 11111222234566666554 4567788889999999873 2468888888
Q ss_pred ccCC---ChhHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhc-CCHHHHHHHHHHHHc-cChhH
Q 025930 172 SNNE---ASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRD-CSREDIRTLAHRTLT-SSPAF 235 (246)
Q Consensus 172 l~~~---~~~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~-~~~~~~~~~A~~~L~-~~~~~ 235 (246)
+... ...+|..|+.+|..++...... ..+.|..+..+ ..+.++|-+|...|- +.|..
T Consensus 530 i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~-------v~~~l~~I~~n~~e~~EvRiaA~~~lm~~~P~~ 591 (618)
T PF01347_consen 530 IEGKEEVPHFIRVAAIQALRRLAKHCPEK-------VREILLPIFMNTTEDPEVRIAAYLILMRCNPSP 591 (618)
T ss_dssp STTSS-S-HHHHHHHHHTTTTGGGT-HHH-------HHHHHHHHHH-TTS-HHHHHHHHHHHHHT---H
T ss_pred hhhccccchHHHHHHHHHHHHHhhcCcHH-------HHHHHHHHhcCCCCChhHHHHHHHHHHhcCCCH
Confidence 8766 6789999999999887633221 45667777765 456677877776664 44543
No 175
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=91.65 E-value=5.2 Score=38.86 Aligned_cols=171 Identities=11% Similarity=0.107 Sum_probs=106.4
Q ss_pred CHHHHHHHHHHHHHhcCCcchHHHH-HhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh-CCchhHHHHHhcCCHHHHHH
Q 025930 43 DETIHRVAAGAIANLAMNETNQELI-MTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC-GNDKLQLKLRGEGGIKALLG 120 (246)
Q Consensus 43 ~~~~~~~a~~~L~~la~~~~~~~~i-~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~-~~~~~~~~l~~~g~i~~L~~ 120 (246)
+...+..|+..+........ .... ...|-+..++.+.....+..+...++..|..++ ..... ..=...++.+.+++
T Consensus 266 ~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~-~~~~~~~v~p~lld 343 (815)
T KOG1820|consen 266 KWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPL-FRKYAKNVFPSLLD 343 (815)
T ss_pred chHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchh-hHHHHHhhcchHHH
Confidence 66666667777777766654 1111 122334455555555456777888888888887 22222 22223356788999
Q ss_pred HhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhcc--CchhHH
Q 025930 121 MVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQ--HEVNAK 198 (246)
Q Consensus 121 ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~--~~~~~~ 198 (246)
.+....+.++.....++--.+.. .+ -....+.+...+++.+|.++..+...+...-. ++....
T Consensus 344 ~lkekk~~l~d~l~~~~d~~~ns--------~~-------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~ 408 (815)
T KOG1820|consen 344 RLKEKKSELRDALLKALDAILNS--------TP-------LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVE 408 (815)
T ss_pred HhhhccHHHHHHHHHHHHHHHhc--------cc-------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcc
Confidence 99877777776666555544421 01 13467888999999999999998777766643 222222
Q ss_pred HHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 025930 199 DMISGGALWELVRISRDCSREDIRTLAHRTLTS 231 (246)
Q Consensus 199 ~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~ 231 (246)
.---.+.++.++.... +..+++|.+|.++++-
T Consensus 409 ~~t~~~l~p~~~~~~~-D~~~~VR~Aa~e~~~~ 440 (815)
T KOG1820|consen 409 KETVKTLVPHLIKHIN-DTDKDVRKAALEAVAA 440 (815)
T ss_pred hhhHHHHhHHHhhhcc-CCcHHHHHHHHHHHHH
Confidence 2223456677777776 5667789999988863
No 176
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=91.53 E-value=2.2 Score=36.27 Aligned_cols=108 Identities=10% Similarity=0.144 Sum_probs=73.0
Q ss_pred HHHhcCCChHHHHHHHHHHHHhh-CCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhc-ccccccccCChhh
Q 025930 78 TTAANAEDPQTLRMVAGAIANLC-GNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAK-CESRASTQGTKTG 155 (246)
Q Consensus 78 ~ll~~~~~~~~~~~a~~aL~~L~-~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~-~~~~~~~~~~~~~ 155 (246)
..+++ .++.+++.|..+|.-.| .+.+..... ++.+...+..+++.++..|+.++..+.. +. ..........
T Consensus 34 P~v~~-~~~~vR~~al~cLGl~~Lld~~~a~~~-----l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g-~~~~~~~~~~ 106 (298)
T PF12719_consen 34 PAVQS-SDPAVRELALKCLGLCCLLDKELAKEH-----LPLFLQALQKDDEEVKITALKALFDLLLTHG-IDIFDSESDN 106 (298)
T ss_pred HHhcC-CCHHHHHHHHHHHHHHHHhChHHHHHH-----HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC-chhccchhcc
Confidence 55666 57899999999999888 444333322 5677888877789999999999998764 21 0000000000
Q ss_pred hHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhcc
Q 025930 156 RSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQ 192 (246)
Q Consensus 156 ~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~ 192 (246)
.........+..+...+.+.+++++..++..++.|-.
T Consensus 107 ~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL 143 (298)
T PF12719_consen 107 DESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLL 143 (298)
T ss_pred CccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 0111224567788888888899999999999999843
No 177
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=91.30 E-value=0.15 Score=45.97 Aligned_cols=177 Identities=16% Similarity=0.184 Sum_probs=94.5
Q ss_pred HHHHHHhcCCcchHHHHHh-cCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhcCCCHHH
Q 025930 51 AGAIANLAMNETNQELIMT-QGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDV 129 (246)
Q Consensus 51 ~~~L~~la~~~~~~~~i~~-~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~ 129 (246)
+..+..-..++.++..+.+ .++|..+.....+ |..+.+.++.++..++.+.....+++....+.+--..++...+++
T Consensus 226 ~~~fv~k~e~e~n~~~iGk~~~~I~~~~~~ieS--~~hvVek~~~~~~s~~~~~~~t~ql~k~~l~~pTe~v~~l~~~~I 303 (763)
T KOG4231|consen 226 ASTFVKKMEDEGNRSVIGKDENAIRQLISMIES--DQHVVEKACVALSSLARDVGVTMQLMKCDLMKPTETVLKLSSPDI 303 (763)
T ss_pred HHHHHHHhhCcccceeecccchhhhhhcccccc--cchhhcccccccccHHHHHHHHHHHHHHHhcCcchhhhhhccccH
Confidence 4456666677777766654 2345555544444 455666677666665544444444444333333322222111111
Q ss_pred HHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhccCchhHHHHHhCC-cHHH
Q 025930 130 LAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQHEVNAKDMISGG-ALWE 208 (246)
Q Consensus 130 ~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~g-~i~~ 208 (246)
. .....+..+.. .++..-+.+........+-.+....+++++.++..++.+++.+.++|...+.+- .-..
T Consensus 304 ~-~l~~~v~~~~~--------~s~s~~Qe~~~K~~~~~lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~ 374 (763)
T KOG4231|consen 304 I-SLLQVVVTLAF--------VSDSVSQEMLTKDMLKALKSLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLREL 374 (763)
T ss_pred h-hHHHHHhcCCc--------hhhhHHhhhhHHHHHHHHHHHhcccChHHHHHHHHHHHHheecccccccccCChHHHHH
Confidence 0 11111112221 122333333333345666777777899999999999999999888887655543 3334
Q ss_pred HHHHHhcCCHHHHHHHHHHHHccChhHHHHHHH
Q 025930 209 LVRISRDCSREDIRTLAHRTLTSSPAFQAEMRR 241 (246)
Q Consensus 209 L~~ll~~~~~~~~~~~A~~~L~~~~~~~~e~~~ 241 (246)
+++++.- .....-+.|.++++-..+ .|+-|
T Consensus 375 ~~~~i~~-~~~~~~~~~~~a~~~~~~--~eil~ 404 (763)
T KOG4231|consen 375 LMRLIVT-PEPRVNKAAARALAILGE--NEILR 404 (763)
T ss_pred HHHHhcc-cccccchhhhHHHHHhhh--hHHHH
Confidence 4666653 333445666666665554 35544
No 178
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=91.20 E-value=0.72 Score=37.80 Aligned_cols=80 Identities=20% Similarity=0.216 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHhcCcHH-------HHHHHHhcCCChHHHHHHHHHHHHhhCCc-hhHHH-HHhcCCHH
Q 025930 46 IHRVAAGAIANLAMNETNQELIMTQGGIG-------LLSTTAANAEDPQTLRMVAGAIANLCGND-KLQLK-LRGEGGIK 116 (246)
Q Consensus 46 ~~~~a~~~L~~la~~~~~~~~i~~~g~i~-------~L~~ll~~~~~~~~~~~a~~aL~~L~~~~-~~~~~-l~~~g~i~ 116 (246)
-|+.|..+|+.|+..+.|-+.+...+-.. .|+.++...+++-.++.|...|.+|+..+ ..... -.+.+.|.
T Consensus 140 PqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~ 219 (257)
T PF12031_consen 140 PQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCIS 219 (257)
T ss_pred HHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHH
Confidence 47889999999999988887777665544 55566666678889999999999999544 33333 34788999
Q ss_pred HHHHHhcCC
Q 025930 117 ALLGMVRCG 125 (246)
Q Consensus 117 ~L~~ll~~~ 125 (246)
.|+.++...
T Consensus 220 ~Li~FiE~a 228 (257)
T PF12031_consen 220 HLIAFIEDA 228 (257)
T ss_pred HHHHHHHHH
Confidence 999999643
No 179
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=90.87 E-value=3 Score=32.04 Aligned_cols=32 Identities=28% Similarity=0.371 Sum_probs=27.0
Q ss_pred CHHHHHHHhcCCCCHHHHHHHHHHHHHh-cCCc
Q 025930 30 GLTSLLMLLGSSEDETIHRVAAGAIANL-AMNE 61 (246)
Q Consensus 30 ~i~~Li~ll~~~~~~~~~~~a~~~L~~l-a~~~ 61 (246)
.++.|++.++.+.++.+++++.++||.| |.|+
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP 43 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALRVLGILGALDP 43 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCc
Confidence 4678889999987789999999999999 5554
No 180
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=90.73 E-value=2.8 Score=39.46 Aligned_cols=138 Identities=17% Similarity=0.142 Sum_probs=97.8
Q ss_pred HHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCc
Q 025930 24 KIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGND 103 (246)
Q Consensus 24 ~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~ 103 (246)
.-+.+.++|.|...++.. +..+|+.++..+..++..-+ ..+++.-.+|.+..+.....+..++.+++-++..+.
T Consensus 384 e~~~~~IlplL~~S~~~~-~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~--- 457 (700)
T KOG2137|consen 384 EEVKEKILPLLYRSLEDS-DVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI--- 457 (700)
T ss_pred HHHHHHHHHHHHHHhcCc-chhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH---
Confidence 344566788888888775 88889999999999876633 445555668888887766677788888888888887
Q ss_pred hhHHHHHhcCC---HHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhH
Q 025930 104 KLQLKLRGEGG---IKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPI 179 (246)
Q Consensus 104 ~~~~~l~~~g~---i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v 179 (246)
+.+-...+ +.++.+..+..++.+.-...++..++... ...+ +.+....++|.++.+...+.-..
T Consensus 458 ---q~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~--------~~~g-~ev~~~~VlPlli~ls~~~~L~~ 524 (700)
T KOG2137|consen 458 ---QRLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALI--------IYSG-VEVMAENVLPLLIPLSVAPSLNG 524 (700)
T ss_pred ---HHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhh--------cccc-eeeehhhhhhhhhhhhhcccccH
Confidence 22222233 45556666678899998888888888752 2233 44555779999999887775433
No 181
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=90.69 E-value=7.9 Score=34.91 Aligned_cols=146 Identities=18% Similarity=0.238 Sum_probs=75.7
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHH-HHHHHhhCCchhHHHH
Q 025930 31 LTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVA-GAIANLCGNDKLQLKL 109 (246)
Q Consensus 31 i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~-~aL~~L~~~~~~~~~l 109 (246)
+..+++.|+...++..+..|.++|..++.+...+-.=.-.=+|..+++.-.+. +.++...|. .++.-+++....+.
T Consensus 331 L~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds-~~~v~~~Aeed~~~~las~~P~~~-- 407 (516)
T KOG2956|consen 331 LLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDS-QDEVMRVAEEDCLTTLASHLPLQC-- 407 (516)
T ss_pred HHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCC-chhHHHHHHHHHHHHHHhhCchhH--
Confidence 34566666665566667777777777766643331111011233444444443 333333333 33444443322222
Q ss_pred HhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHH
Q 025930 110 RGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCH 189 (246)
Q Consensus 110 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~ 189 (246)
|..+..++...|......++..+.-++.. -+.+.---++ ....|.+++-..+....||+.|+.||..
T Consensus 408 -----I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~-------l~~EeL~~ll-~diaP~~iqay~S~SS~VRKtaVfCLVa 474 (516)
T KOG2956|consen 408 -----IVNISPLILTADEPRAVAVIKMLTKLFER-------LSAEELLNLL-PDIAPCVIQAYDSTSSTVRKTAVFCLVA 474 (516)
T ss_pred -----HHHHhhHHhcCcchHHHHHHHHHHHHHhh-------cCHHHHHHhh-hhhhhHHHHHhcCchHHhhhhHHHhHHH
Confidence 22233333334444444444455555531 0011111112 3578999999999999999999999987
Q ss_pred hcc
Q 025930 190 LAQ 192 (246)
Q Consensus 190 La~ 192 (246)
+-.
T Consensus 475 mv~ 477 (516)
T KOG2956|consen 475 MVN 477 (516)
T ss_pred HHH
Confidence 743
No 182
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=90.65 E-value=2.4 Score=41.05 Aligned_cols=185 Identities=15% Similarity=0.085 Sum_probs=114.1
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcc---hHH------HHHh----cCcHHHHHHHHhcCCChHHHHHHHHHHH
Q 025930 31 LTSLLMLLGSSEDETIHRVAAGAIANLAMNET---NQE------LIMT----QGGIGLLSTTAANAEDPQTLRMVAGAIA 97 (246)
Q Consensus 31 i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~---~~~------~i~~----~g~i~~L~~ll~~~~~~~~~~~a~~aL~ 97 (246)
-..|+.+|+.+ .+-..++.++.-+..|.+ +|. .+.+ ...+|.|+..... .+...+-+-..+|.
T Consensus 817 a~klld~Ls~~---~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t-~~~~~K~~yl~~Ls 892 (1030)
T KOG1967|consen 817 AEKLLDLLSGP---STGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFET-APGSQKHNYLEALS 892 (1030)
T ss_pred HHHHHHhcCCc---cccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhcc-CCccchhHHHHHHH
Confidence 45677777653 334445555555555521 111 1222 2456777766663 33445556677888
Q ss_pred HhhCCchhHHHHHh-cCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCC
Q 025930 98 NLCGNDKLQLKLRG-EGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEA 176 (246)
Q Consensus 98 ~L~~~~~~~~~l~~-~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~ 176 (246)
+.-.+...+..+=+ ....|.|+..|+.+|..++..+..++.-+.... +.....- -.-.+|.+..+-.+++
T Consensus 893 hVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~--------~tL~t~~-~~Tlvp~lLsls~~~~ 963 (1030)
T KOG1967|consen 893 HVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTES--------ETLQTEH-LSTLVPYLLSLSSDND 963 (1030)
T ss_pred HHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhc--------cccchHH-HhHHHHHHHhcCCCCC
Confidence 77655433333223 246888899999999999999998888765310 1111111 1246888888887775
Q ss_pred ---hhHHHHHHHHHHHhcc-CchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 025930 177 ---SPIRRHIELALCHLAQ-HEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTL 229 (246)
Q Consensus 177 ---~~v~~~a~~aL~~La~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L 229 (246)
..+|+.|+.+|..|.. -|-..-.-.+...++.|+..+. +..+.+|+.|.++-
T Consensus 964 n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~Ld-DkKRlVR~eAv~tR 1019 (1030)
T KOG1967|consen 964 NNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILD-DKKRLVRKEAVDTR 1019 (1030)
T ss_pred cchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccC-cHHHHHHHHHHHHh
Confidence 6799999999999987 4444333344556777888886 56667778777653
No 183
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=90.62 E-value=1 Score=43.51 Aligned_cols=140 Identities=15% Similarity=0.158 Sum_probs=97.5
Q ss_pred hHHHHHhcCcHHHHHHHHhcCC-------ChHHHHHHHHHHHHhhCCchhHHHHHhc--------CCHHHHHHHhc----
Q 025930 63 NQELIMTQGGIGLLSTTAANAE-------DPQTLRMVAGAIANLCGNDKLQLKLRGE--------GGIKALLGMVR---- 123 (246)
Q Consensus 63 ~~~~i~~~g~i~~L~~ll~~~~-------~~~~~~~a~~aL~~L~~~~~~~~~l~~~--------g~i~~L~~ll~---- 123 (246)
..+.+.+.+++..++++..-.. -.+....|++.|.-+..-|..+..+... .|+.+++....
T Consensus 593 ~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~ 672 (1516)
T KOG1832|consen 593 AAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNS 672 (1516)
T ss_pred HHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeeccccccc
Confidence 4467888899998888876422 1345668888888777888888776432 25555555442
Q ss_pred CCCHHHHHHHHHHHHHhhccc--ccccc------------------cCC-------hhhhHHHHhCCChHHHHHcccCC-
Q 025930 124 CGHPDVLAQVARGIANFAKCE--SRAST------------------QGT-------KTGRSLLIDDGALPWIVQNSNNE- 175 (246)
Q Consensus 124 ~~~~~~~~~a~~~L~nL~~~~--~~~~~------------------~~~-------~~~~~~l~~~g~i~~Lv~ll~~~- 175 (246)
-.++++++.|++++-|+..-+ +.++. +++ ......+..+++|..|+.|++-.
T Consensus 673 i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~ 752 (1516)
T KOG1832|consen 673 IVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKN 752 (1516)
T ss_pred ccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccC
Confidence 238999999999999965422 11111 011 22345566788999999999655
Q ss_pred ----ChhHHHHHHHHHHHhccCchhHHHHHh
Q 025930 176 ----ASPIRRHIELALCHLAQHEVNAKDMIS 202 (246)
Q Consensus 176 ----~~~v~~~a~~aL~~La~~~~~~~~i~~ 202 (246)
-..+|..|+.+|.-|+.++..|+.+..
T Consensus 753 P~t~aD~IRalAc~~L~GLaR~~tVrQIltK 783 (1516)
T KOG1832|consen 753 PPTTADCIRALACRVLLGLARDDTVRQILTK 783 (1516)
T ss_pred CCCcHHHHHHHHHHHHhccccCcHHHHHHHh
Confidence 346899999999999999999877753
No 184
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.37 E-value=5.9 Score=38.31 Aligned_cols=172 Identities=13% Similarity=0.084 Sum_probs=105.7
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHHHHh
Q 025930 32 TSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRG 111 (246)
Q Consensus 32 ~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~ 111 (246)
+.-+..+.++ .+.++-.+...|..+....+....+...+.+.+.++.+++ +|.-+.-+|...+..||.- ..
T Consensus 730 qeai~sl~d~-qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lkd-edsyvyLnaI~gv~~Lcev-------y~ 800 (982)
T KOG4653|consen 730 QEAISSLHDD-QVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKD-EDSYVYLNAIRGVVSLCEV-------YP 800 (982)
T ss_pred HHHHHHhcCC-cccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcc-cCceeeHHHHHHHHHHHHh-------cc
Confidence 3344444443 5667888999999999887777888888899999999998 5677777888877777732 23
Q ss_pred cCCHHHHHH-HhcC---CCHHHHH-------HHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHH
Q 025930 112 EGGIKALLG-MVRC---GHPDVLA-------QVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIR 180 (246)
Q Consensus 112 ~g~i~~L~~-ll~~---~~~~~~~-------~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~ 180 (246)
..++|.+.+ .... ..++.+- +.+.+++.|+. ..+. -.+...+...++++...|
T Consensus 801 e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~-----------~y~~-----~Li~tfl~gvrepd~~~R 864 (982)
T KOG4653|consen 801 EDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVF-----------KYKA-----VLINTFLSGVREPDHEFR 864 (982)
T ss_pred hhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHH-----------HHHH-----HHHHHHHHhcCCchHHHH
Confidence 345666655 2221 1122222 23333333331 1111 123444555565666778
Q ss_pred HHHHHHHHHhcc--CchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHc
Q 025930 181 RHIELALCHLAQ--HEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLT 230 (246)
Q Consensus 181 ~~a~~aL~~La~--~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~ 230 (246)
-.++..+++||. .-.....+.+ ....++.+.+.++..-.|++|...+.
T Consensus 865 aSS~a~lg~Lcq~~a~~vsd~~~e--v~~~Il~l~~~d~s~~vRRaAv~li~ 914 (982)
T KOG4653|consen 865 ASSLANLGQLCQLLAFQVSDFFHE--VLQLILSLETTDGSVLVRRAAVHLLA 914 (982)
T ss_pred HhHHHHHHHHHHHHhhhhhHHHHH--HHHHHHHHHccCCchhhHHHHHHHHH
Confidence 888999999876 2122233333 45566667766777777777776665
No 185
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=90.34 E-value=16 Score=34.42 Aligned_cols=122 Identities=10% Similarity=0.041 Sum_probs=76.8
Q ss_pred ChHHHHHHHHHHHHhhCCchhHHHHHhc--CCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhC
Q 025930 85 DPQTLRMVAGAIANLCGNDKLQLKLRGE--GGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDD 162 (246)
Q Consensus 85 ~~~~~~~a~~aL~~L~~~~~~~~~l~~~--g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~ 162 (246)
++..+..+++.|.|+..++.+++.+... -.+..+...-..++..++...+....|++.. .-+.-.+.
T Consensus 601 ~~an~ll~vR~L~N~f~~~~g~~~~~s~~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~-----------l~~~~~~~ 669 (745)
T KOG0301|consen 601 DPANQLLVVRCLANLFSNPAGRELFMSRLESILDPVIEASSLSNKNLQIALATLALNYSVL-----------LIQDNEQL 669 (745)
T ss_pred chhHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHH-----------HHhccccc
Confidence 3555668899999999888888777643 1222222222234456666666666687742 11111123
Q ss_pred CChHHHHHcc----cCC-ChhHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCC
Q 025930 163 GALPWIVQNS----NNE-ASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCS 217 (246)
Q Consensus 163 g~i~~Lv~ll----~~~-~~~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~ 217 (246)
+..+.+...+ .+- +-+....++.||.+|+..+.....+.+.-.+..+..-+++..
T Consensus 670 ~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~~~A~~~~v~sia~~~~~~~ 729 (745)
T KOG0301|consen 670 EGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVIQLAKNRSVDSIAKKLKEAV 729 (745)
T ss_pred chHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHHHHHHhcCHHHHHHHHHHhc
Confidence 4444444333 222 335677788999999998888888888888888888887643
No 186
>PRK14707 hypothetical protein; Provisional
Probab=90.20 E-value=13 Score=39.80 Aligned_cols=203 Identities=15% Similarity=0.072 Sum_probs=120.7
Q ss_pred hccccccHHHHHHhCCHHHHHHHh-cCCCCHHHHHHHHHHH-HHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHH
Q 025930 15 DIRAQSNQEKIVEAGGLTSLLMLL-GSSEDETIHRVAAGAI-ANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMV 92 (246)
Q Consensus 15 ~~~~~~~~~~i~~~g~i~~Li~ll-~~~~~~~~~~~a~~~L-~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a 92 (246)
++..+..+..+--+| +-..++.| +.++.+.. ..|+..| ..++.+...+..+-. -.+...++-+++-.|..+...|
T Consensus 234 l~~~~~l~~~~~~q~-va~~lN~lsKwp~~~~C-~~a~~~lA~rl~~~~~l~~al~~-q~vanalNalSKwpd~~vc~~A 310 (2710)
T PRK14707 234 LADESRLRNELKPQE-LGNALNALSKWADTPVC-AAAASALAERLVDDPGLRKALDP-INVTQALNALSKWADLPVCAEA 310 (2710)
T ss_pred HcCcHHHHHhCChHH-HHHHHHHHhcCCCchHH-HHHHHHHHHHHhhhHHHHHhcCH-HHHHHHHhhhhcCCCchHHHHH
Confidence 344444444443344 44444444 44434443 3344444 456666666665543 2345556667766677776666
Q ss_pred HHHHH-HhhCCchhHHHHHhcCCHHHHHHHhc-CCCHHHHHHHHHHHH-HhhcccccccccCChhhhHHHHhCCChHHHH
Q 025930 93 AGAIA-NLCGNDKLQLKLRGEGGIKALLGMVR-CGHPDVLAQVARGIA-NFAKCESRASTQGTKTGRSLLIDDGALPWIV 169 (246)
Q Consensus 93 ~~aL~-~L~~~~~~~~~l~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~-nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv 169 (246)
+.+|. .|..+++..+.+--.++ ..++.-|+ =++..+...++.+|. -|+ ++++.++.+-..|+-..|-
T Consensus 311 a~~la~rl~~d~~l~~~~~~~~~-~~~LNalsKWpd~~~C~~Aa~~LA~rl~---------~d~~l~~~l~~q~~a~~lN 380 (2710)
T PRK14707 311 AIALAERLADDPELCKALNARGL-STALNALSKWPDNPVCAAAVSALAERLV---------ADPELRKDLEPQGVSSVLN 380 (2710)
T ss_pred HHHHHHHHhccHhhhhccchHHH-HHHHHHhhcCCCchhHHHHHHHHHHHhc---------cCHhhhcccchhHHHHHHh
Confidence 66664 45577777666544444 44555554 345555666666666 566 6688999998888888888
Q ss_pred HcccCCChhHHHHHHHHHHH-hccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 025930 170 QNSNNEASPIRRHIELALCH-LAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTS 231 (246)
Q Consensus 170 ~ll~~~~~~v~~~a~~aL~~-La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~ 231 (246)
.+.+.++..++..++.+|.. |..+.+.++.+--.|.. .++.-++.=.+...-..|...|+.
T Consensus 381 alsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~va-n~lnalsKWPd~~~C~~aa~~lA~ 442 (2710)
T PRK14707 381 ALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQGVS-NALNALAKWPDLPICGQAVSALAG 442 (2710)
T ss_pred hhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhhHH-HHHHHhhcCCcchhHHHHHHHHHH
Confidence 89998888888888877764 46677777777655544 444444333333344555555543
No 187
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=90.16 E-value=5.9 Score=30.57 Aligned_cols=109 Identities=15% Similarity=0.221 Sum_probs=66.7
Q ss_pred CCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCc--HHHHHHHHhcCCChHHHHHHHHHHHHhh----CC
Q 025930 29 GGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGG--IGLLSTTAANAEDPQTLRMVAGAIANLC----GN 102 (246)
Q Consensus 29 g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~--i~~L~~ll~~~~~~~~~~~a~~aL~~L~----~~ 102 (246)
..+..+.++|++. ++.-+..++. |.....++...+.+.+.++ +..++.++++.+++.+.+.++.+|..+. ..
T Consensus 25 ~l~~ri~~LL~s~-~~~~rw~G~~-Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~ 102 (165)
T PF08167_consen 25 KLVTRINSLLQSK-SAYSRWAGLC-LLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK 102 (165)
T ss_pred HHHHHHHHHhCCC-ChhhHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3456677888875 5554554444 4444433333455555444 6677888888777788889998888887 45
Q ss_pred chhHHHHHhc---CCHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 025930 103 DKLQLKLRGE---GGIKALLGMVRCGHPDVLAQVARGIANFA 141 (246)
Q Consensus 103 ~~~~~~l~~~---g~i~~L~~ll~~~~~~~~~~a~~~L~nL~ 141 (246)
++..+++.-. +.++.++.++.. ......++.+|..+-
T Consensus 103 p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll 142 (165)
T PF08167_consen 103 PTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLL 142 (165)
T ss_pred CchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHH
Confidence 6655555422 245555555553 355666777776654
No 188
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=90.03 E-value=11 Score=32.68 Aligned_cols=173 Identities=9% Similarity=0.017 Sum_probs=118.0
Q ss_pred CHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh-CCchhHHH
Q 025930 30 GLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC-GNDKLQLK 108 (246)
Q Consensus 30 ~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~-~~~~~~~~ 108 (246)
++..|+.--. ++++--.+..+|..+..++...+.+.+...+..+.+.... ++-++...|...+..+- .+......
T Consensus 126 il~~L~~gy~---~~dial~~g~mlRec~k~e~l~~~iL~~~~f~~ff~~~~~-~~Fdiasdaf~t~~~llt~hk~~~a~ 201 (335)
T PF08569_consen 126 ILDILLRGYE---NPDIALNCGDMLRECIKHESLAKIILYSECFWKFFKYVQL-PNFDIASDAFSTFKELLTRHKKLVAE 201 (335)
T ss_dssp HHHHHHHGGG---STTTHHHHHHHHHHHTTSHHHHHHHHTSGGGGGHHHHTTS-SSHHHHHHHHHHHHHHHHSSHHHHHH
T ss_pred HHHHHHHHhc---CccccchHHHHHHHHHhhHHHHHHHhCcHHHHHHHHHhcC-CccHhHHHHHHHHHHHHhccHHHHHH
Confidence 3555555444 3344566788999999999888888888888888888776 57888888998888865 56666555
Q ss_pred HHhcC---CHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHh----CCChHHHHHcccCCChhHHH
Q 025930 109 LRGEG---GIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLID----DGALPWIVQNSNNEASPIRR 181 (246)
Q Consensus 109 l~~~g---~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~----~g~i~~Lv~ll~~~~~~v~~ 181 (246)
..... .+...-.++.+++--.+.+++..|+.+-.. +.+...|.. ..-+..++.+|++.+..+|.
T Consensus 202 fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellld---------r~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~ 272 (335)
T PF08569_consen 202 FLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLD---------RSNFNVMTRYISSPENLKLMMNLLRDKSKNIQF 272 (335)
T ss_dssp HHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHS---------GGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHc---------hhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhH
Confidence 55443 355677788899999999999999998743 455444443 23477889999999999999
Q ss_pred HHHHHHHHhccCchhHHHHHh--CCcHHHHHHHHhc
Q 025930 182 HIELALCHLAQHEVNAKDMIS--GGALWELVRISRD 215 (246)
Q Consensus 182 ~a~~aL~~La~~~~~~~~i~~--~g~i~~L~~ll~~ 215 (246)
.|-.++--...+|..-..+.+ ..--..|++++.+
T Consensus 273 eAFhvFKvFVANp~K~~~I~~iL~~Nr~kLl~fl~~ 308 (335)
T PF08569_consen 273 EAFHVFKVFVANPNKPPPIVDILIKNREKLLRFLKD 308 (335)
T ss_dssp HHHHHHHHHHH-SS-BHHHHHHHHHTHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHh
Confidence 999888777655544333322 1233455555543
No 189
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.82 E-value=8.8 Score=37.18 Aligned_cols=203 Identities=14% Similarity=0.052 Sum_probs=117.8
Q ss_pred hhHHhHhhccccccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCC--
Q 025930 8 TISVKSEDIRAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAED-- 85 (246)
Q Consensus 8 ~~~~~~~~~~~~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~-- 85 (246)
++.++..+....+.+..+-..+.+...++.+++. |+-+--.|+..+..|+.- .....+|.+.+-..+..+
T Consensus 747 gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lkde-dsyvyLnaI~gv~~Lcev-------y~e~il~dL~e~Y~s~k~k~ 818 (982)
T KOG4653|consen 747 GLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDE-DSYVYLNAIRGVVSLCEV-------YPEDILPDLSEEYLSEKKKL 818 (982)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHHHhccc-CceeeHHHHHHHHHHHHh-------cchhhHHHHHHHHHhcccCC
Confidence 4455556654445556666778888888888874 666555566655555533 122456666664433221
Q ss_pred -hHHHHHHHHHHHHhh--CCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChh-hhHHHHh
Q 025930 86 -PQTLRMVAGAIANLC--GNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKT-GRSLLID 161 (246)
Q Consensus 86 -~~~~~~a~~aL~~L~--~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~-~~~~l~~ 161 (246)
.+.+-..-.|+.++. ..+-...... -.+..++...++++..-+..+++.+++||-- ..- +.+.+.
T Consensus 819 ~~d~~lkVGEai~k~~qa~Gel~~~y~~--~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~--------~a~~vsd~~~- 887 (982)
T KOG4653|consen 819 QTDYRLKVGEAILKVAQALGELVFKYKA--VLINTFLSGVREPDHEFRASSLANLGQLCQL--------LAFQVSDFFH- 887 (982)
T ss_pred CccceehHHHHHHHHHHHhccHHHHHHH--HHHHHHHHhcCCchHHHHHhHHHHHHHHHHH--------HhhhhhHHHH-
Confidence 112222335555554 2222222221 2345566666777777799999999999831 111 111222
Q ss_pred CCChHHHHHcccCC-ChhHHHHHHHHHHHhcc--CchhHHHHH---hCCcHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 025930 162 DGALPWIVQNSNNE-ASPIRRHIELALCHLAQ--HEVNAKDMI---SGGALWELVRISRDCSREDIRTLAHRTLTS 231 (246)
Q Consensus 162 ~g~i~~Lv~ll~~~-~~~v~~~a~~aL~~La~--~~~~~~~i~---~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~ 231 (246)
.++..++.+...+ ...+|+.|+..+..+-. ..+. -.+. -......+..+.....++..+..|..++..
T Consensus 888 -ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dl-Lpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~lee 961 (982)
T KOG4653|consen 888 -EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDL-LPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEE 961 (982)
T ss_pred -HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhh-HHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 2455666666655 67899999999988844 3222 2222 224556677777777888888888877654
No 190
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=89.81 E-value=9.1 Score=31.96 Aligned_cols=64 Identities=14% Similarity=0.184 Sum_probs=39.8
Q ss_pred HHhCCHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh
Q 025930 26 VEAGGLTSLLMLLGSSE-DETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC 100 (246)
Q Consensus 26 ~~~g~i~~Li~ll~~~~-~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~ 100 (246)
..+..+|.|+..+...+ .|.++..|+.+|+++. ++. ..+.+-+..++ +...+.+.+..|+..+-
T Consensus 64 ~~~~Av~~l~~vl~desq~pmvRhEAaealga~~-~~~---------~~~~l~k~~~d-p~~~v~ETc~lAi~rle 128 (289)
T KOG0567|consen 64 QDEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-DPE---------SLEILTKYIKD-PCKEVRETCELAIKRLE 128 (289)
T ss_pred ccchhhHHHHHHhcccccchHHHHHHHHHHHhhc-chh---------hHHHHHHHhcC-CccccchHHHHHHHHHH
Confidence 34566899999887753 4666777999999988 432 34444444422 34455555555555553
No 191
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.61 E-value=20 Score=34.50 Aligned_cols=104 Identities=14% Similarity=0.106 Sum_probs=64.6
Q ss_pred CHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh-CCchhHH
Q 025930 30 GLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC-GNDKLQL 107 (246)
Q Consensus 30 ~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~-~~~~~~~ 107 (246)
..|.+-++|++. ++.+++.|+.+...+-.. ++.-+.+ ++....++.+ .|..+...++..+..+| .+++.-.
T Consensus 143 lapeVe~Ll~~~-~~~irKKA~Lca~r~irK~P~l~e~f-----~~~~~~lL~e-k~hGVL~~~l~l~~e~c~~~~~~l~ 215 (866)
T KOG1062|consen 143 LAPEVERLLQHR-DPYIRKKAALCAVRFIRKVPDLVEHF-----VIAFRKLLCE-KHHGVLIAGLHLITELCKISPDALS 215 (866)
T ss_pred hhHHHHHHHhCC-CHHHHHHHHHHHHHHHHcCchHHHHh-----hHHHHHHHhh-cCCceeeeHHHHHHHHHhcCHHHHH
Confidence 456667777775 888999988888887544 4433333 4455556665 35666666666777777 4455544
Q ss_pred HHHhcCCHHHHHHHhcC---------------CCHHHHHHHHHHHHHhhc
Q 025930 108 KLRGEGGIKALLGMVRC---------------GHPDVLAQVARGIANFAK 142 (246)
Q Consensus 108 ~l~~~g~i~~L~~ll~~---------------~~~~~~~~a~~~L~nL~~ 142 (246)
.+-+ .++-++..|+. ++|-++...++.|+-|-.
T Consensus 216 ~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq 263 (866)
T KOG1062|consen 216 YFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQ 263 (866)
T ss_pred HHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcC
Confidence 4443 45555555531 266677777777776663
No 192
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=89.60 E-value=2.3 Score=30.74 Aligned_cols=71 Identities=11% Similarity=0.040 Sum_probs=48.9
Q ss_pred ChHHHHHcccCCChhHHHHHHHHHHHhccCchhHHHHHhC---------CcHHHHHHHHhcCCHHHHHHHHHHHHccChh
Q 025930 164 ALPWIVQNSNNEASPIRRHIELALCHLAQHEVNAKDMISG---------GALWELVRISRDCSREDIRTLAHRTLTSSPA 234 (246)
Q Consensus 164 ~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~---------g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~~ 234 (246)
+++.|++-|.+.+++|...|..+|.+.|.++...+.++.. -|.+.+.++++. ..+.+.|....+
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v~~~p~l~~L~~~g~~Ll~~~lS~-------~~Gf~~L~~~~~ 81 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLVSLRPSLDHLGDIGSPLLLRFLST-------PSGFRYLNEIGY 81 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHHHcCcHHHHHHHcCHHHHHHHHcc-------hHHHHHhcchhH
Confidence 4889999999999999999999999999877665555532 234445555531 122345566666
Q ss_pred HHHHHHH
Q 025930 235 FQAEMRR 241 (246)
Q Consensus 235 ~~~e~~~ 241 (246)
...|+++
T Consensus 82 v~~El~~ 88 (115)
T PF14663_consen 82 VEKELDK 88 (115)
T ss_pred HHHHHHH
Confidence 7777654
No 193
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.45 E-value=25 Score=35.38 Aligned_cols=182 Identities=10% Similarity=0.054 Sum_probs=93.7
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHH----HHHhcCCChHHHHHHHHHHHHhh--CCchhH
Q 025930 33 SLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLS----TTAANAEDPQTLRMVAGAIANLC--GNDKLQ 106 (246)
Q Consensus 33 ~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~----~ll~~~~~~~~~~~a~~aL~~L~--~~~~~~ 106 (246)
.+.....+..+..+|+.+-..|..++..++......+ -+..+. +-+++ .+.-.+...+.+|..+- .+.+..
T Consensus 657 ~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q--~i~~I~n~L~ds~qs-~~~~~~~~rl~~L~~L~~~~~~e~~ 733 (1176)
T KOG1248|consen 657 TVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQ--RIDDIFNSLLDSFQS-SSSPAQASRLKCLKRLLKLLSAEHC 733 (1176)
T ss_pred HhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHH--HHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHhccHHHH
Confidence 4455555555778899999999999877544433332 233333 33333 23445556667776665 332333
Q ss_pred HHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCC--ChhHHHHHH
Q 025930 107 LKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNE--ASPIRRHIE 184 (246)
Q Consensus 107 ~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~--~~~v~~~a~ 184 (246)
.-+.. .|+-++-.++..+...++.+..+|.+++.... ..+++.+. ....+..++..+..+ .++.+..+.
T Consensus 734 ~~i~k--~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~-----~~d~g~e~--~~~~lnefl~~Isagl~gd~~~~~as 804 (1176)
T KOG1248|consen 734 DLIPK--LIPEVILSLKEVNVKARRNAFALLVFIGAIQS-----SLDDGNEP--ASAILNEFLSIISAGLVGDSTRVVAS 804 (1176)
T ss_pred HHHHH--HHHHHHHhcccccHHHHhhHHHHHHHHHHHHh-----hhcccccc--hHHHHHHHHHHHHhhhcccHHHHHHH
Confidence 33322 24444444477788889999988888872100 00111110 011344444444444 333433333
Q ss_pred --HHHHHhccCchhHHHHHhCCcHHHH----HHHHhcCCHHHHHHHHHHHHc
Q 025930 185 --LALCHLAQHEVNAKDMISGGALWEL----VRISRDCSREDIRTLAHRTLT 230 (246)
Q Consensus 185 --~aL~~La~~~~~~~~i~~~g~i~~L----~~ll~~~~~~~~~~~A~~~L~ 230 (246)
.++..+... -+.+.+.+.+..+ ..++. ++.++++.+|.+.++
T Consensus 805 ~Ivai~~il~e---~~~~ld~~~l~~li~~V~~~L~-s~sreI~kaAI~fik 852 (1176)
T KOG1248|consen 805 DIVAITHILQE---FKNILDDETLEKLISMVCLYLA-SNSREIAKAAIGFIK 852 (1176)
T ss_pred HHHHHHHHHHH---HhccccHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHH
Confidence 344443331 1233333333333 33343 566777888887775
No 194
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=89.32 E-value=1.9 Score=41.77 Aligned_cols=159 Identities=18% Similarity=0.177 Sum_probs=104.2
Q ss_pred HHHHHhCCHHHHHHHhcCCCCHH-------HHHHHHHHHHHhcCCcchHHHHHhc--------CcHHHHHHHHh---cCC
Q 025930 23 EKIVEAGGLTSLLMLLGSSEDET-------IHRVAAGAIANLAMNETNQELIMTQ--------GGIGLLSTTAA---NAE 84 (246)
Q Consensus 23 ~~i~~~g~i~~Li~ll~~~~~~~-------~~~~a~~~L~~la~~~~~~~~i~~~--------g~i~~L~~ll~---~~~ 84 (246)
+.+..-|++..+++++..+.+.. ...+|..+|.-+..-++.+..+... .|+.+++.... +.-
T Consensus 595 enflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~ 674 (1516)
T KOG1832|consen 595 ENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSIV 674 (1516)
T ss_pred HHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeeccccccccc
Confidence 46777899999999988754322 3455777777776678788776542 25555554332 223
Q ss_pred ChHHHHHHHHHHHHhhCCc-hh-----------------------------------HHHHHhcCCHHHHHHHhcCC---
Q 025930 85 DPQTLRMVAGAIANLCGND-KL-----------------------------------QLKLRGEGGIKALLGMVRCG--- 125 (246)
Q Consensus 85 ~~~~~~~a~~aL~~L~~~~-~~-----------------------------------~~~l~~~g~i~~L~~ll~~~--- 125 (246)
|++++..|+++|.|+.-.+ ++ ...+...+||.+|+++|...
T Consensus 675 Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~ 754 (1516)
T KOG1832|consen 675 DPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPP 754 (1516)
T ss_pred CHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCC
Confidence 7999999999999875222 22 12233457899999999743
Q ss_pred --CHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChH--HHHHcccCC--------ChhHHHHHHHHHHHh
Q 025930 126 --HPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALP--WIVQNSNNE--------ASPIRRHIELALCHL 190 (246)
Q Consensus 126 --~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~--~Lv~ll~~~--------~~~v~~~a~~aL~~L 190 (246)
-..++.-|+++|..|+ .++..|+.+.+--.+. .+-.++..+ +...++.|...|...
T Consensus 755 t~aD~IRalAc~~L~GLa---------R~~tVrQIltKLpLvt~~~~q~lm~ePV~~Dkr~~H~~fck~A~~Ll~~~ 822 (1516)
T KOG1832|consen 755 TTADCIRALACRVLLGLA---------RDDTVRQILTKLPLVTNERAQILMAEPVTYDKRHEHLQFCKLASALLKEA 822 (1516)
T ss_pred CcHHHHHHHHHHHHhccc---------cCcHHHHHHHhCccccchHHHHHhhCcccccchhHHHHHHHHHHHHHHHH
Confidence 2348899999999999 5578999888765443 333444333 345566666665554
No 195
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.05 E-value=4.3 Score=39.64 Aligned_cols=157 Identities=11% Similarity=0.100 Sum_probs=95.0
Q ss_pred cHHHHHHHHhc-------CCChHHHHHHHHHHHHhh---CCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 025930 72 GIGLLSTTAAN-------AEDPQTLRMVAGAIANLC---GNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFA 141 (246)
Q Consensus 72 ~i~~L~~ll~~-------~~~~~~~~~a~~aL~~L~---~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~ 141 (246)
.++.+++++.+ ..++.....|+.++.+++ ....--+-.++.=.+..+...++++---++.+||..+..++
T Consensus 411 ~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~ 490 (1010)
T KOG1991|consen 411 ILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFS 490 (1010)
T ss_pred HHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHH
Confidence 45566677762 124566778888888887 12222222334445677777888888889999999999998
Q ss_pred cccccccccCChhhhHHHHhCCChHHHHHccc-CCChhHHHHHHHHHHHhccCchhH-HHHHh--CCcHHHHHHHHhcCC
Q 025930 142 KCESRASTQGTKTGRSLLIDDGALPWIVQNSN-NEASPIRRHIELALCHLAQHEVNA-KDMIS--GGALWELVRISRDCS 217 (246)
Q Consensus 142 ~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~-~~~~~v~~~a~~aL~~La~~~~~~-~~i~~--~g~i~~L~~ll~~~~ 217 (246)
.- +.+..-.-..+++.-...+. +.+-.|+-.|+.||..+-++.+.. ..+.. -+..+.|+.+.+.-+
T Consensus 491 ~~----------df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~E 560 (1010)
T KOG1991|consen 491 SI----------DFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVE 560 (1010)
T ss_pred hc----------cCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcc
Confidence 42 11111111234455555555 566789999999999997755443 33443 356667777777666
Q ss_pred HHHHHHHHHHHHccChhHHHHHHH
Q 025930 218 REDIRTLAHRTLTSSPAFQAEMRR 241 (246)
Q Consensus 218 ~~~~~~~A~~~L~~~~~~~~e~~~ 241 (246)
.+++...-.. ..-+|.+|++-
T Consensus 561 nd~Lt~vme~---iV~~fseElsP 581 (1010)
T KOG1991|consen 561 NDDLTNVMEK---IVCKFSEELSP 581 (1010)
T ss_pred hhHHHHHHHH---HHHHHHHhhch
Confidence 6655322222 23445555543
No 196
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=88.89 E-value=16 Score=34.06 Aligned_cols=192 Identities=13% Similarity=0.095 Sum_probs=113.3
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhC---CchhHH
Q 025930 32 TSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCG---NDKLQL 107 (246)
Q Consensus 32 ~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~---~~~~~~ 107 (246)
+...+.-+. +|..++..|..+|..+..- .+.-....|.-........+++ .+.++..++...-..+|. +.+.-.
T Consensus 224 qvvceatq~-~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks-~nd~va~qavEfWsticeEeid~~~e~ 301 (858)
T COG5215 224 QVVCEATQG-NDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKS-QNDEVAIQAVEFWSTICEEEIDGEMED 301 (858)
T ss_pred eeeehhccC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 344444444 5888999999999988544 3333445554444455566777 567787788877777761 111110
Q ss_pred --------------HHHhcCCHHHHHHHhcC-------CCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChH
Q 025930 108 --------------KLRGEGGIKALLGMVRC-------GHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALP 166 (246)
Q Consensus 108 --------------~l~~~g~i~~L~~ll~~-------~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~ 166 (246)
+-.-.+++|.|+++|.. ++..+...|...|--++. -....+. ..++.
T Consensus 302 ~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq-----------~~gd~i~-~pVl~ 369 (858)
T COG5215 302 KYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQ-----------LKGDKIM-RPVLG 369 (858)
T ss_pred hhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHH-----------HhhhHhH-HHHHH
Confidence 01123478899999953 233344445444444441 1222233 23666
Q ss_pred HHHHcccCCChhHHHHHHHHHHHhccCch-hHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccChhHHHH
Q 025930 167 WIVQNSNNEASPIRRHIELALCHLAQHEV-NAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSSPAFQAE 238 (246)
Q Consensus 167 ~Lv~ll~~~~~~v~~~a~~aL~~La~~~~-~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~~~~~e 238 (246)
+.-+-+.+++=.-|+.++.+++..-..+. ....-+-..++|.+...+.+ +.--++..+.+++.-+..+-++
T Consensus 370 FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D-~~l~vk~ttAwc~g~iad~va~ 441 (858)
T COG5215 370 FVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSD-SCLWVKSTTAWCFGAIADHVAM 441 (858)
T ss_pred HHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhccc-ceeehhhHHHHHHHHHHHHHHH
Confidence 77777888888889999999999876332 22222334578888888874 3334455666666655554443
No 197
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.83 E-value=1.6 Score=40.88 Aligned_cols=108 Identities=16% Similarity=0.190 Sum_probs=75.9
Q ss_pred HHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh-CCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcc
Q 025930 65 ELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC-GNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKC 143 (246)
Q Consensus 65 ~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~-~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~ 143 (246)
..|+..|+...++.=+.+ +--++++.|...++.|+ +.|.....- +.-|++++..+..+++..|..+|..++..
T Consensus 367 ~siI~sGACGA~VhGlED-Ef~EVR~AAV~Sl~~La~ssP~FA~~a-----ldfLvDMfNDE~~~VRL~ai~aL~~Is~~ 440 (823)
T KOG2259|consen 367 ESIIPSGACGALVHGLED-EFYEVRRAAVASLCSLATSSPGFAVRA-----LDFLVDMFNDEIEVVRLKAIFALTMISVH 440 (823)
T ss_pred cccccccccceeeeechH-HHHHHHHHHHHHHHHHHcCCCCcHHHH-----HHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 445666667777666665 34679999999999998 566665443 56789999988899999999999998842
Q ss_pred cccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhcc
Q 025930 144 ESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQ 192 (246)
Q Consensus 144 ~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~ 192 (246)
.-+++.-++.+...+.+.++++|+..-..|.+.-.
T Consensus 441 --------------l~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~ 475 (823)
T KOG2259|consen 441 --------------LAIREEQLRQILESLEDRSVDVREALRELLKNARV 475 (823)
T ss_pred --------------heecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 11223346666677766777777766666555533
No 198
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=87.42 E-value=17 Score=33.70 Aligned_cols=131 Identities=14% Similarity=0.145 Sum_probs=85.5
Q ss_pred hHhhccccccHHHHHHhCCHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHh-cCCChH
Q 025930 12 KSEDIRAQSNQEKIVEAGGLTSLLMLLGSSED---ETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAA-NAEDPQ 87 (246)
Q Consensus 12 ~~~~~~~~~~~~~i~~~g~i~~Li~ll~~~~~---~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~-~~~~~~ 87 (246)
+..++........++...++..|.+++.+++. ..+...+..++..+..+--.....+...+|.....+.. ...+..
T Consensus 107 l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~~~~~~fV~~~a~~V~~~~~~a~ 186 (713)
T KOG2999|consen 107 LDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWESVSNDFVVSMASYVNAKREDAN 186 (713)
T ss_pred HhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeeeecccHHHHHHHHHHhhhhhccc
Confidence 34556677778899999999999999998754 22333455555555444322333333333333333332 113455
Q ss_pred HHHHHHHHHHHhh-CCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 025930 88 TLRMVAGAIANLC-GNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAK 142 (246)
Q Consensus 88 ~~~~a~~aL~~L~-~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~ 142 (246)
+...|+..|-++. .++.....+.+.--+..|+..+...+..+...|...+..|-.
T Consensus 187 ~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~ 242 (713)
T KOG2999|consen 187 TLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFR 242 (713)
T ss_pred chHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 6778888888887 445566777788889999999998888888887776666653
No 199
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=87.16 E-value=11 Score=38.10 Aligned_cols=206 Identities=14% Similarity=0.047 Sum_probs=101.4
Q ss_pred hhhhHHhHhhccccccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-----cchHHHHHhcCcHHHHHHHH
Q 025930 6 LNTISVKSEDIRAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN-----ETNQELIMTQGGIGLLSTTA 80 (246)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-----~~~~~~i~~~g~i~~L~~ll 80 (246)
++++.++..|+..-+.-.++ .-++|-++.++..+ ...+|-.|..+|..+-.. +.+...+.| =.+|-|-.++
T Consensus 441 ~~ALeLl~~lS~~i~de~~L--DRVlPY~v~l~~Ds-~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~e-YlfP~L~~l~ 516 (1431)
T KOG1240|consen 441 LAALELLQELSTYIDDEVKL--DRVLPYFVHLLMDS-EADVRATALETLTELLALVRDIPPSDANIFPE-YLFPHLNHLL 516 (1431)
T ss_pred HHHHHHHHHHhhhcchHHHH--hhhHHHHHHHhcCc-hHHHHHHHHHHHHHHHhhccCCCcccchhhHh-hhhhhhHhhh
Confidence 45677788776554433333 67799999999886 777888888888876322 334444433 1344444445
Q ss_pred hcCCChHHHHHHHHHHHHhh-------------------CCchh-----------HHHHHhcCCHHHHHHHhcCCCHHHH
Q 025930 81 ANAEDPQTLRMVAGAIANLC-------------------GNDKL-----------QLKLRGEGGIKALLGMVRCGHPDVL 130 (246)
Q Consensus 81 ~~~~~~~~~~~a~~aL~~L~-------------------~~~~~-----------~~~l~~~g~i~~L~~ll~~~~~~~~ 130 (246)
.+.+...++..-+..|..|+ +++.+ ...+. .++-+....++..+++.++
T Consensus 517 ~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~-~~V~~~v~sLlsd~~~~Vk 595 (1431)
T KOG1240|consen 517 NDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALH-HTVEQMVSSLLSDSPPIVK 595 (1431)
T ss_pred ccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHH-HHHHHHHHHHHcCCchHHH
Confidence 44222223322233333332 11111 00111 1122233445555555666
Q ss_pred HHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhccCchhHHHHHhCCcHHHHH
Q 025930 131 AQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQHEVNAKDMISGGALWELV 210 (246)
Q Consensus 131 ~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~ 210 (246)
..-+..+.-||.. +-+.=.+.=.++.|...|++.|..+|..=-.-|..+|..-.-| -.+++.+|.|.
T Consensus 596 r~Lle~i~~LC~F-----------FGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r--s~seyllPLl~ 662 (1431)
T KOG1240|consen 596 RALLESIIPLCVF-----------FGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR--SVSEYLLPLLQ 662 (1431)
T ss_pred HHHHHHHHHHHHH-----------hhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeee--eHHHHHHHHHH
Confidence 6666667777741 1111112234667777777666666655555555444311111 12333455555
Q ss_pred HHHhcCCHHHHHHHHHHHHc
Q 025930 211 RISRDCSREDIRTLAHRTLT 230 (246)
Q Consensus 211 ~ll~~~~~~~~~~~A~~~L~ 230 (246)
+-+.++ ++.+..-|.+++.
T Consensus 663 Q~ltD~-EE~Viv~aL~~ls 681 (1431)
T KOG1240|consen 663 QGLTDG-EEAVIVSALGSLS 681 (1431)
T ss_pred HhccCc-chhhHHHHHHHHH
Confidence 555532 3333444444443
No 200
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=86.74 E-value=13 Score=36.83 Aligned_cols=154 Identities=16% Similarity=0.069 Sum_probs=93.4
Q ss_pred HHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCc
Q 025930 24 KIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGND 103 (246)
Q Consensus 24 ~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~ 103 (246)
..+-++++..|++.+++. |-.++..|++-++.++...+ ..+++ ..+.-.+.++.-.++...--.++-||..|+...
T Consensus 336 ~eivE~vie~Lls~l~d~-dt~VrWSaAKg~grvt~rlp--~~Lad-~vi~svid~~~p~e~~~aWHgacLaLAELA~rG 411 (1133)
T KOG1943|consen 336 PEIVEFVIEHLLSALSDT-DTVVRWSAAKGLGRVTSRLP--PELAD-QVIGSVIDLFNPAEDDSAWHGACLALAELALRG 411 (1133)
T ss_pred HHHHHHHHHHHHHhccCC-cchhhHHHHHHHHHHHccCc--HHHHH-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC
Confidence 445578899999999986 67788889999999987743 22221 245555565554444555448999999998332
Q ss_pred hhHHHHHhcCCHHHHHHHhcC--------CCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHH-HHcccC
Q 025930 104 KLQLKLRGEGGIKALLGMVRC--------GHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWI-VQNSNN 174 (246)
Q Consensus 104 ~~~~~l~~~g~i~~L~~ll~~--------~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~L-v~ll~~ 174 (246)
-..-...+ .++|.+++-+.. ....++..|+-.++.++.+ +.+..-+-+.+ ...+.| ..-+.+
T Consensus 412 lLlps~l~-dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Ra-------ys~~~l~p~l~-~L~s~LL~~AlFD 482 (1133)
T KOG1943|consen 412 LLLPSLLE-DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARA-------YSPSDLKPVLQ-SLASALLIVALFD 482 (1133)
T ss_pred CcchHHHH-HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhc-------CChhhhhHHHH-HHHHHHHHHHhcC
Confidence 22111111 256777766642 2456899999999998853 11111111111 112222 223344
Q ss_pred CChhHHHHHHHHHHHh
Q 025930 175 EASPIRRHIELALCHL 190 (246)
Q Consensus 175 ~~~~v~~~a~~aL~~L 190 (246)
..-.+|..|..|+...
T Consensus 483 revncRRAAsAAlqE~ 498 (1133)
T KOG1943|consen 483 REVNCRRAASAALQEN 498 (1133)
T ss_pred chhhHhHHHHHHHHHH
Confidence 5667888888888866
No 201
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=86.66 E-value=2.1 Score=38.66 Aligned_cols=171 Identities=13% Similarity=0.145 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHhcCCcchHHHHH-hcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh-----CCchhHHHHHhcCCHHHHH
Q 025930 46 IHRVAAGAIANLAMNETNQELIM-TQGGIGLLSTTAANAEDPQTLRMVAGAIANLC-----GNDKLQLKLRGEGGIKALL 119 (246)
Q Consensus 46 ~~~~a~~~L~~la~~~~~~~~i~-~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~-----~~~~~~~~l~~~g~i~~L~ 119 (246)
++..|.++++-...++..|.... -.+....+...+.+ ..-..++.++|++.|++ .-|.....-....++ .+.
T Consensus 407 v~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d-~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~-ll~ 484 (728)
T KOG4535|consen 407 VKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLED-KSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGL-LLL 484 (728)
T ss_pred HHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhh-HhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHH-HHH
Confidence 33446666666666665554332 12333344444443 23457888999999997 222212221121111 122
Q ss_pred HHhc------CCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhC-------CChHHHHH-cccCCChhHHHHHHH
Q 025930 120 GMVR------CGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDD-------GALPWIVQ-NSNNEASPIRRHIEL 185 (246)
Q Consensus 120 ~ll~------~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~-------g~i~~Lv~-ll~~~~~~v~~~a~~ 185 (246)
+++. .....++.++.++|.|+. ...+.+.+. |.+..+.. -..++...||=++|.
T Consensus 485 ~~~~~A~~~~Ad~dkV~~navraLgnll------------Qvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCy 552 (728)
T KOG4535|consen 485 KMLRSAIEASADKDKVKSNAVRALGNLL------------QFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACY 552 (728)
T ss_pred HHHHHHHHhhhhhhhhhhHHHHHHhhHH------------HHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHH
Confidence 2222 234568899999999988 333333322 22222222 234557889999999
Q ss_pred HHHHhccCchhH-HHHHhC-CcHHHHHHHHhcCCHHHHHHHHHHHHc
Q 025930 186 ALCHLAQHEVNA-KDMISG-GALWELVRISRDCSREDIRTLAHRTLT 230 (246)
Q Consensus 186 aL~~La~~~~~~-~~i~~~-g~i~~L~~ll~~~~~~~~~~~A~~~L~ 230 (246)
++.||-.|+... +.+.-+ -..+.|..++.+..+=.+|--|..+|.
T Consensus 553 a~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~ 599 (728)
T KOG4535|consen 553 AMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALS 599 (728)
T ss_pred HHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhc
Confidence 999998876652 222223 345667778877766666666666664
No 202
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=86.51 E-value=20 Score=30.77 Aligned_cols=149 Identities=17% Similarity=0.174 Sum_probs=85.0
Q ss_pred CHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC---cchHHHHHhcCcHHHHHHHHhcCC-ChHHHHHHHHHHHHhh----C
Q 025930 30 GLTSLLMLLGSSEDETIHRVAAGAIANLAMN---ETNQELIMTQGGIGLLSTTAANAE-DPQTLRMVAGAIANLC----G 101 (246)
Q Consensus 30 ~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~---~~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~~a~~aL~~L~----~ 101 (246)
.++.+...++.+.. .-+..|+.+++-++.. ......+.+ ...|.|..++.+.. ...++..++.+|.-++ .
T Consensus 87 L~~~~~k~lkkg~~-~E~~lA~~~l~Ll~ltlg~g~~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~ 164 (309)
T PF05004_consen 87 LLDALLKSLKKGKS-EEQALAARALALLALTLGAGEDSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGS 164 (309)
T ss_pred HHHHHHHHhccCCH-HHHHHHHHHHHHHhhhcCCCccHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcC
Confidence 47777888888743 3355677777766544 233444443 36778888887643 3455555555655443 3
Q ss_pred CchhHHHHHhcCCHHHHHHH--hc----------CCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHH
Q 025930 102 NDKLQLKLRGEGGIKALLGM--VR----------CGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIV 169 (246)
Q Consensus 102 ~~~~~~~l~~~g~i~~L~~l--l~----------~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv 169 (246)
+++.....++ .+..+... .+ .+++.+...|+.+-+-|...- ...... ... ...+|.|+
T Consensus 165 d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~------~~~~~~-~~~-~~~~~~l~ 234 (309)
T PF05004_consen 165 DEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTL------PDSKLE-DLL-EEALPALS 234 (309)
T ss_pred ChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcC------CHHHHH-HHH-HHHHHHHH
Confidence 3333332211 12211111 11 123567777776666655321 111122 222 34699999
Q ss_pred HcccCCChhHHHHHHHHHHHh
Q 025930 170 QNSNNEASPIRRHIELALCHL 190 (246)
Q Consensus 170 ~ll~~~~~~v~~~a~~aL~~L 190 (246)
.+|...+.++|..|-.+|.-|
T Consensus 235 ~lL~s~d~~VRiAAGEaiAll 255 (309)
T PF05004_consen 235 ELLDSDDVDVRIAAGEAIALL 255 (309)
T ss_pred HHhcCCCHHHHHHHHHHHHHH
Confidence 999999999999998887766
No 203
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=86.37 E-value=11 Score=33.05 Aligned_cols=93 Identities=17% Similarity=0.242 Sum_probs=59.5
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhcC-CCHHHHHHHHHHHHHhhcccccccccC
Q 025930 73 IGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRC-GHPDVLAQVARGIANFAKCESRASTQG 151 (246)
Q Consensus 73 i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~nL~~~~~~~~~~~ 151 (246)
+..+++=+.+.....++..++--|..-+.++..+.++...|.++.+++.+.. ++..+...++.++.-+-. .
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~--------~ 94 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLS--------R 94 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHc--------c
Confidence 4555555554445567777777777778999999999999999999999953 333244444444443332 1
Q ss_pred ChhhhHHHHhCCChHHHHHccc
Q 025930 152 TKTGRSLLIDDGALPWIVQNSN 173 (246)
Q Consensus 152 ~~~~~~~l~~~g~i~~Lv~ll~ 173 (246)
+...-..+.+.+....++.++.
T Consensus 95 d~~~~~l~~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 95 DGLNMHLLLDRDSLRLLLKLLK 116 (361)
T ss_pred CCcchhhhhchhHHHHHHHHhc
Confidence 1223333344556666677776
No 204
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=86.01 E-value=3.3 Score=31.30 Aligned_cols=84 Identities=12% Similarity=0.092 Sum_probs=62.3
Q ss_pred CChHHHHHcccCCChhHHHHHHHHHHHhccCch--hHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHcc---------
Q 025930 163 GALPWIVQNSNNEASPIRRHIELALCHLAQHEV--NAKDMISGGALWELVRISRDCSREDIRTLAHRTLTS--------- 231 (246)
Q Consensus 163 g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~~--~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~--------- 231 (246)
.++..|..-+.+.++.++..|+..|-.+..|.. -...+.+...+..|++++....+..++.-....+..
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~~~ 116 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKNDP 116 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCCCc
Confidence 357778888888999999999999999977443 467777888999999999875677777777666642
Q ss_pred ----ChhHHHHHHHhhhcC
Q 025930 232 ----SPAFQAEMRRLRIDY 246 (246)
Q Consensus 232 ----~~~~~~e~~~~~~~~ 246 (246)
+.++-.++++.|+.|
T Consensus 117 ~l~~i~~~y~~L~~~G~~f 135 (144)
T cd03568 117 SLSLMSDLYKKLKNEGPDL 135 (144)
T ss_pred ccHHHHHHHHHHHHcCCCC
Confidence 244455666666553
No 205
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=85.96 E-value=3.5 Score=31.07 Aligned_cols=84 Identities=10% Similarity=0.031 Sum_probs=62.1
Q ss_pred CChHHHHHcccCCChhHHHHHHHHHHHhccC--chhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHcc---------
Q 025930 163 GALPWIVQNSNNEASPIRRHIELALCHLAQH--EVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTS--------- 231 (246)
Q Consensus 163 g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~--~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~--------- 231 (246)
.++..|..-+..+++.++..|+..|-.+..| ..-...+.+.+.+..|+.++....+..++.-+...+.+
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~ 120 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRNKP 120 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCCCc
Confidence 4677888888889999999999999888775 33467777889999999999866666677666655532
Q ss_pred ----ChhHHHHHHHhhhcC
Q 025930 232 ----SPAFQAEMRRLRIDY 246 (246)
Q Consensus 232 ----~~~~~~e~~~~~~~~ 246 (246)
+.++-.++++-|+.+
T Consensus 121 ~l~~i~~~y~~L~~~G~~F 139 (142)
T cd03569 121 QLKYVVDTYQILKAEGHKF 139 (142)
T ss_pred ccHHHHHHHHHHHHcCCCC
Confidence 223556677766653
No 206
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=85.89 E-value=3.8 Score=30.98 Aligned_cols=72 Identities=11% Similarity=0.078 Sum_probs=60.7
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccC-CChhHHHHHHHHHHHhcc
Q 025930 114 GIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNN-EASPIRRHIELALCHLAQ 192 (246)
Q Consensus 114 ~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~-~~~~v~~~a~~aL~~La~ 192 (246)
++..+.+-+.++++.++..|+.+|-.+..+ ....+...+....++..|+.++.. .++.|+..++..+...+.
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkN-------CG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAEN-------CGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHH-------CCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 467788888899999999999888887763 346788888888999999999988 688999999999988864
No 207
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=85.87 E-value=27 Score=31.66 Aligned_cols=191 Identities=13% Similarity=0.104 Sum_probs=109.3
Q ss_pred CHHHHHHHhcCCCCHHHHHHHHHHHHHh-cCCcchHHH--HHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhH
Q 025930 30 GLTSLLMLLGSSEDETIHRVAAGAIANL-AMNETNQEL--IMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQ 106 (246)
Q Consensus 30 ~i~~Li~ll~~~~~~~~~~~a~~~L~~l-a~~~~~~~~--i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~ 106 (246)
.+..++.-++......-++.|..-|..+ +.+...-+. +.+ .+..+++.+++..++..++.|++.|..++.+..-
T Consensus 287 ~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~--iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~- 363 (516)
T KOG2956|consen 287 LVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAE--ILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPA- 363 (516)
T ss_pred HHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHH--HHHHHHHHHccchhhHHHHHHHHHHHHHHHhchH-
Confidence 3556666666543444455566655555 444222221 222 3556778888766788899999999999965533
Q ss_pred HHHHh--cCCHHHHHHHhcCCCHHHHHHHH-HHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHH
Q 025930 107 LKLRG--EGGIKALLGMVRCGHPDVLAQVA-RGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHI 183 (246)
Q Consensus 107 ~~l~~--~g~i~~L~~ll~~~~~~~~~~a~-~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a 183 (246)
++.+ +-++..+++.-+..+.++...|. .++.-++.+ .+. ..|..+..++...|...-..+
T Consensus 364 -~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~--------~P~--------~~I~~i~~~Ilt~D~~~~~~~ 426 (516)
T KOG2956|consen 364 -RLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASH--------LPL--------QCIVNISPLILTADEPRAVAV 426 (516)
T ss_pred -hhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhh--------Cch--------hHHHHHhhHHhcCcchHHHHH
Confidence 2222 12455566666666666655555 344455543 222 234555555555666565666
Q ss_pred HHHHHHhccCchhHHHHH--hCCcHHHHHHHHhcCCHHHHHHHHHHHHcc------ChhHHHHHHHh
Q 025930 184 ELALCHLAQHEVNAKDMI--SGGALWELVRISRDCSREDIRTLAHRTLTS------SPAFQAEMRRL 242 (246)
Q Consensus 184 ~~aL~~La~~~~~~~~i~--~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~------~~~~~~e~~~~ 242 (246)
+..+..+...-.. +.+. -....|.+++-.. +....+|+.|.=+|.. ..+|.+++++|
T Consensus 427 iKm~Tkl~e~l~~-EeL~~ll~diaP~~iqay~-S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~L 491 (516)
T KOG2956|consen 427 IKMLTKLFERLSA-EELLNLLPDIAPCVIQAYD-STSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQL 491 (516)
T ss_pred HHHHHHHHhhcCH-HHHHHhhhhhhhHHHHHhc-CchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhc
Confidence 6677777653222 2222 2457777777776 4556677777766653 34566666554
No 208
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=85.73 E-value=5.6 Score=37.88 Aligned_cols=85 Identities=13% Similarity=0.098 Sum_probs=51.8
Q ss_pred CHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHh
Q 025930 43 DETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMV 122 (246)
Q Consensus 43 ~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll 122 (246)
+.++++.|+.+|+=+...+. ..++-.+.+|++.-|+.++-.++.||.-.|....++..+ ..|-.+.
T Consensus 568 nDDVrRaAVialGFVl~~dp--------~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi------~lLepl~ 633 (929)
T KOG2062|consen 568 NDDVRRAAVIALGFVLFRDP--------EQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEAI------NLLEPLT 633 (929)
T ss_pred chHHHHHHHHHheeeEecCh--------hhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHH------HHHhhhh
Confidence 34455555555554433321 124566777877678999988888998777666555443 4444445
Q ss_pred cCCCHHHHHHHHHHHHHhh
Q 025930 123 RCGHPDVLAQVARGIANFA 141 (246)
Q Consensus 123 ~~~~~~~~~~a~~~L~nL~ 141 (246)
+++..-+++-|+.++..+.
T Consensus 634 ~D~~~fVRQgAlIa~amIm 652 (929)
T KOG2062|consen 634 SDPVDFVRQGALIALAMIM 652 (929)
T ss_pred cChHHHHHHHHHHHHHHHH
Confidence 5555557777777766543
No 209
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=85.57 E-value=16 Score=35.36 Aligned_cols=168 Identities=15% Similarity=0.095 Sum_probs=103.3
Q ss_pred CHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh---CCchhHHHHHhcCCHHHHH
Q 025930 43 DETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC---GNDKLQLKLRGEGGIKALL 119 (246)
Q Consensus 43 ~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~---~~~~~~~~l~~~g~i~~L~ 119 (246)
.+.+++.++.-+++++..-.. .....+.++-+..+..+. ...++..|...+.++. ..+. -. .....+.++
T Consensus 250 ~~~Vr~~~a~~l~~~a~~~~~--~~~~s~v~~~~~~L~~Dd-qdsVr~~a~~~~~~l~~l~~~~~---d~-~~~~~~~l~ 322 (759)
T KOG0211|consen 250 TPMVRRAVASNLGNIAKVLES--EIVKSEVLPTLIQLLRDD-QDSVREAAVESLVSLLDLLDDDD---DV-VKSLTESLV 322 (759)
T ss_pred chhhHHHHHhhhHHHHHHHHH--HHHHhhccHHHhhhhhcc-hhhHHHHHHHHHHHHHHhcCCch---hh-hhhhhHHHH
Confidence 455555566666666554222 444455666777777763 3456777777776665 2221 11 112457788
Q ss_pred HHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhcc--CchhH
Q 025930 120 GMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQ--HEVNA 197 (246)
Q Consensus 120 ~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~--~~~~~ 197 (246)
....+++..++.........|+. ..-.....-..+++...+++....+.+..+..-...++. +.+..
T Consensus 323 ~~~~d~~~~v~~~~~~~~~~L~~-----------~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~ 391 (759)
T KOG0211|consen 323 QAVEDGSWRVSYMVADKFSELSS-----------AVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCY 391 (759)
T ss_pred HHhcChhHHHHHHHhhhhhhHHH-----------HhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccc
Confidence 88888888888888877777763 222223334457788888888888888888777777765 44455
Q ss_pred HHHHhCCcHHHHHHHHhcCCHHHHHHHHHHH
Q 025930 198 KDMISGGALWELVRISRDCSREDIRTLAHRT 228 (246)
Q Consensus 198 ~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~ 228 (246)
..+.....++.+..++.+.......+.|.-.
T Consensus 392 ~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~ 422 (759)
T KOG0211|consen 392 PNIPDSSILPEVQVLVLDNALHVRSALASVI 422 (759)
T ss_pred cccchhhhhHHHHHHHhcccchHHHHHhccc
Confidence 6666666778887777654444433444433
No 210
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=85.35 E-value=18 Score=33.69 Aligned_cols=53 Identities=19% Similarity=0.124 Sum_probs=31.5
Q ss_pred CChhHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHc
Q 025930 175 EASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLT 230 (246)
Q Consensus 175 ~~~~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~ 230 (246)
++..+|..|+.||...+.+.+. .+......-.|.+.+ ++.++++|..|.-++.
T Consensus 499 EN~ivRsaAv~aLskf~ln~~d--~~~~~sv~~~lkRcl-nD~DdeVRdrAsf~l~ 551 (898)
T COG5240 499 ENNIVRSAAVQALSKFALNISD--VVSPQSVENALKRCL-NDQDDEVRDRASFLLR 551 (898)
T ss_pred hhhHHHHHHHHHHHHhccCccc--cccHHHHHHHHHHHh-hcccHHHHHHHHHHHH
Confidence 4778999999999888775433 111112223344444 4666677776665554
No 211
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=84.79 E-value=3.8 Score=28.36 Aligned_cols=70 Identities=16% Similarity=0.096 Sum_probs=52.7
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhcc-Cc
Q 025930 116 KALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQ-HE 194 (246)
Q Consensus 116 ~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~-~~ 194 (246)
...+..+.++.+.++..+...|+.|.... . .......+++..+...++++++-+-.+|...|..|+. .+
T Consensus 6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~---------~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p 75 (92)
T PF10363_consen 6 QEALSDLNDPLPPVRAHGLVLLRKLIESK---------S-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP 75 (92)
T ss_pred HHHHHHccCCCcchHHHHHHHHHHHHHcC---------C-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh
Confidence 44556667888889999999999998531 1 1122224567788889999999999999999999987 44
Q ss_pred h
Q 025930 195 V 195 (246)
Q Consensus 195 ~ 195 (246)
+
T Consensus 76 ~ 76 (92)
T PF10363_consen 76 D 76 (92)
T ss_pred H
Confidence 4
No 212
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.77 E-value=1.1 Score=38.74 Aligned_cols=62 Identities=19% Similarity=0.136 Sum_probs=50.1
Q ss_pred HHHHHHHhcC-CcchHHHHHhcCcHHHHHHHHh-cCCChHHHHHHHHHHHHhh-CCchhHHHHHh
Q 025930 50 AAGAIANLAM-NETNQELIMTQGGIGLLSTTAA-NAEDPQTLRMVAGAIANLC-GNDKLQLKLRG 111 (246)
Q Consensus 50 a~~~L~~la~-~~~~~~~i~~~g~i~~L~~ll~-~~~~~~~~~~a~~aL~~L~-~~~~~~~~l~~ 111 (246)
..+.+++++. +++++..+.+.||++.++.-.. +..||-+++....++++|. .|.+|++.+..
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~k 440 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGK 440 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhc
Confidence 5668899964 4889999999999998875433 4467999999999999998 67888887743
No 213
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=84.73 E-value=4.6 Score=37.42 Aligned_cols=100 Identities=13% Similarity=0.082 Sum_probs=65.7
Q ss_pred CCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHH
Q 025930 29 GGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLK 108 (246)
Q Consensus 29 g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~ 108 (246)
|++..|+..--+..+.++++.|+.+|+-++.++. +.++-.++++++..++.++-..+-+|.-.|.....+.
T Consensus 551 ~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~--------~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~- 621 (926)
T COG5116 551 GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR--------DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV- 621 (926)
T ss_pred hhHhhhheeecccCchHHHHHHHHheeeeEecCc--------chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH-
Confidence 4466666652233356678888888887776642 3456667778766678888778888887775443322
Q ss_pred HHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 025930 109 LRGEGGIKALLGMVRCGHPDVLAQVARGIANFAK 142 (246)
Q Consensus 109 l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~ 142 (246)
++..|-.++.....-+++.|+.++..+..
T Consensus 622 -----a~diL~~L~~D~~dfVRQ~AmIa~~mIl~ 650 (926)
T COG5116 622 -----ATDILEALMYDTNDFVRQSAMIAVGMILM 650 (926)
T ss_pred -----HHHHHHHHhhCcHHHHHHHHHHHHHHHHh
Confidence 24555666667777788888877776554
No 214
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=84.69 E-value=10 Score=30.97 Aligned_cols=134 Identities=14% Similarity=0.105 Sum_probs=85.9
Q ss_pred hhhHHhHhhccccccHHHHHHhCC---HHHHHHHhcCC-CCHHHHHHHHHHHHHhcCCc--chHHHHHhcCcHHHHHHHH
Q 025930 7 NTISVKSEDIRAQSNQEKIVEAGG---LTSLLMLLGSS-EDETIHRVAAGAIANLAMNE--TNQELIMTQGGIGLLSTTA 80 (246)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~i~~~g~---i~~Li~ll~~~-~~~~~~~~a~~~L~~la~~~--~~~~~i~~~g~i~~L~~ll 80 (246)
+.+.++.=++.+++.|..++++.+ +-+.+...++. .-+.++-.+.++++.|.+++ ..-..+.....+|.++.++
T Consensus 119 naL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIm 198 (315)
T COG5209 119 NALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIM 198 (315)
T ss_pred HHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHH
Confidence 445566667889999999999876 45555554443 23556677999999998874 3445566778899999999
Q ss_pred hcCCChHHHHHHHHHHHHhhCCchhHHHHH----hcCCHHHHHHH-----hcCCCHHHHHHHHHHHHHhh
Q 025930 81 ANAEDPQTLRMVAGAIANLCGNDKLQLKLR----GEGGIKALLGM-----VRCGHPDVLAQVARGIANFA 141 (246)
Q Consensus 81 ~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~----~~g~i~~L~~l-----l~~~~~~~~~~a~~~L~nL~ 141 (246)
..++ +-.+-.|..++..+-.++..-+.+. ..-++..++.- .+.+...+.+.+++.-..||
T Consensus 199 e~gS-ElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLs 267 (315)
T COG5209 199 ELGS-ELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLS 267 (315)
T ss_pred Hhhh-HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeec
Confidence 8743 4445456666666665554433332 22233322222 23455667788887777777
No 215
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=84.54 E-value=23 Score=33.49 Aligned_cols=146 Identities=14% Similarity=0.169 Sum_probs=81.9
Q ss_pred HHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHH---HhcCCChHHHHHHHHHHHHhhC
Q 025930 25 IVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTT---AANAEDPQTLRMVAGAIANLCG 101 (246)
Q Consensus 25 i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~l---l~~~~~~~~~~~a~~aL~~L~~ 101 (246)
...+..+..++..+. + ++..+.-++++|.|+-.++..++.+... ...+... .++.++..++...+....|.+-
T Consensus 585 ~~~~~~~~~li~~~~-~-~~an~ll~vR~L~N~f~~~~g~~~~~s~--~~~i~~~~~~~~s~~~knl~ia~atlaln~sv 660 (745)
T KOG0301|consen 585 EEGQNLVGTLIPILN-A-DPANQLLVVRCLANLFSNPAGRELFMSR--LESILDPVIEASSLSNKNLQIALATLALNYSV 660 (745)
T ss_pred hhhhHHHHhhhcccc-c-chhHHHHHHHHHHHhccCHHHHHHHHHH--HHHHhhhhhhhhcccchhHHHHHHHHHHHHHH
Confidence 333456777777776 3 6677888999999999888888777653 2222221 2233455665433333344440
Q ss_pred CchhHHHHHhcCCHHHHHHHhcC-----CCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCC-
Q 025930 102 NDKLQLKLRGEGGIKALLGMVRC-----GHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNE- 175 (246)
Q Consensus 102 ~~~~~~~l~~~g~i~~L~~ll~~-----~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~- 175 (246)
-..+.-.+.++.+.|...+.. ++-+-....+.++.+|+.. +.....+.+.-.+..++.-+++.
T Consensus 661 --~l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~---------~~~~~~~A~~~~v~sia~~~~~~~ 729 (745)
T KOG0301|consen 661 --LLIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTV---------DASVIQLAKNRSVDSIAKKLKEAV 729 (745)
T ss_pred --HHHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccc---------cHHHHHHHHhcCHHHHHHHHHHhc
Confidence 000001125666666666642 2333445666788888843 45666677666677777766543
Q ss_pred ChhHHHHHHH
Q 025930 176 ASPIRRHIEL 185 (246)
Q Consensus 176 ~~~v~~~a~~ 185 (246)
.....+..+.
T Consensus 730 ~~~~~k~~a~ 739 (745)
T KOG0301|consen 730 SNPSGKNIAR 739 (745)
T ss_pred cCchhhHHHH
Confidence 3333344333
No 216
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=83.74 E-value=23 Score=29.02 Aligned_cols=137 Identities=17% Similarity=0.115 Sum_probs=83.7
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcCCc-chHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh-CCchhHHH
Q 025930 31 LTSLLMLLGSSEDETIHRVAAGAIANLAMNE-TNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC-GNDKLQLK 108 (246)
Q Consensus 31 i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~-~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~-~~~~~~~~ 108 (246)
++.|+.-+....++..+......|..++.++ .+...+ +..+..+... .+....-.+.+.+..+- .++...
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~v-----~~~L~~L~~~-~~~~~~~~~~rLl~~lw~~~~r~f-- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPPV-----LQTLVSLVEQ-GSLELRYVALRLLTLLWKANDRHF-- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhHH-----HHHHHHHHcC-CchhHHHHHHHHHHHHHHhCchHH--
Confidence 5667776777778999999999999998887 443333 3445555554 34444334455555554 222221
Q ss_pred HHhcCCHHHHHHH-----h---c--CCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcc-cCCCh
Q 025930 109 LRGEGGIKALLGM-----V---R--CGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNS-NNEAS 177 (246)
Q Consensus 109 l~~~g~i~~L~~l-----l---~--~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll-~~~~~ 177 (246)
+.+..++.. . + +...+.....+..+..+|.. .++ .....++.+-.++ ++.++
T Consensus 74 ----~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~--------~p~-----~g~~ll~~ls~~L~~~~~~ 136 (234)
T PF12530_consen 74 ----PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCS--------RPD-----HGVDLLPLLSGCLNQSCDE 136 (234)
T ss_pred ----HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHh--------Chh-----hHHHHHHHHHHHHhccccH
Confidence 223333333 0 1 12334445555677788742 122 2234688888888 78888
Q ss_pred hHHHHHHHHHHHhcc
Q 025930 178 PIRRHIELALCHLAQ 192 (246)
Q Consensus 178 ~v~~~a~~aL~~La~ 192 (246)
.++..++.+|..||.
T Consensus 137 ~~~alale~l~~Lc~ 151 (234)
T PF12530_consen 137 VAQALALEALAPLCE 151 (234)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999984
No 217
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.57 E-value=61 Score=33.86 Aligned_cols=186 Identities=16% Similarity=0.127 Sum_probs=94.2
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHH-hcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchh---H
Q 025930 31 LTSLLMLLGSSEDETIHRVAAGAIAN-LAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKL---Q 106 (246)
Q Consensus 31 i~~Li~ll~~~~~~~~~~~a~~~L~~-la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~---~ 106 (246)
||.|...=-. +++.+|.. ..-+|| |..|...--.-.-.....-|+.-+.+. .=.+++.+|.||..|-..+.. .
T Consensus 1000 IPrLyRY~yD-P~~~Vq~a-M~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~k-ewRVReasclAL~dLl~g~~~~~~~ 1076 (1702)
T KOG0915|consen 1000 IPRLYRYQYD-PDKKVQDA-MTSIWNALITDSKKVVDEYLNEILDELLVNLTSK-EWRVREASCLALADLLQGRPFDQVK 1076 (1702)
T ss_pred hHHHhhhccC-CcHHHHHH-HHHHHHHhccChHHHHHHHHHHHHHHHHHhccch-hHHHHHHHHHHHHHHHcCCChHHHH
Confidence 4444444222 36666665 445555 455532111111011233333333432 346899999999999855433 2
Q ss_pred HHHHhcCCHHHHHHHhcCCCHHHHHHH---HHHHHHhhc--ccccccccCChhhhHHHHhCCChHHHHH--cccCCChhH
Q 025930 107 LKLRGEGGIKALLGMVRCGHPDVLAQV---ARGIANFAK--CESRASTQGTKTGRSLLIDDGALPWIVQ--NSNNEASPI 179 (246)
Q Consensus 107 ~~l~~~g~i~~L~~ll~~~~~~~~~~a---~~~L~nL~~--~~~~~~~~~~~~~~~~l~~~g~i~~Lv~--ll~~~~~~v 179 (246)
+.+-+ .-..+++.+.+=.+.+++.+ +.++.-+|. ++. .....+++.+ ..++|+|.. .+ +.-+++
T Consensus 1077 e~lpe--lw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~----~~~~~~~~~l--~~iLPfLl~~gim-s~v~ev 1147 (1702)
T KOG0915|consen 1077 EKLPE--LWEAAFRVMDDIKESVREAADKAARALSKLCVRICDV----TNGAKGKEAL--DIILPFLLDEGIM-SKVNEV 1147 (1702)
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc----CCcccHHHHH--HHHHHHHhccCcc-cchHHH
Confidence 22221 22333444433344555544 455555553 110 0112223322 245676654 33 567899
Q ss_pred HHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHH
Q 025930 180 RRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRT 228 (246)
Q Consensus 180 ~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~ 228 (246)
|..+..++..|+.+....-.=--...++.|+.....-++..+-..+.++
T Consensus 1148 r~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~ 1196 (1702)
T KOG0915|consen 1148 RRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRL 1196 (1702)
T ss_pred HHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhh
Confidence 9999999999987433311111234566667766655666555666655
No 218
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=83.32 E-value=44 Score=34.00 Aligned_cols=196 Identities=11% Similarity=0.034 Sum_probs=110.4
Q ss_pred HHHhCC---HHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh-
Q 025930 25 IVEAGG---LTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC- 100 (246)
Q Consensus 25 i~~~g~---i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~- 100 (246)
..+.|. ++.+...+++=.....+..|...|..|+..-..-..+- ..+|.++.++.+ ....++..|+.+|..+-
T Consensus 415 ~~~~ga~l~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~LD--RVlPY~v~l~~D-s~a~Vra~Al~Tlt~~L~ 491 (1431)
T KOG1240|consen 415 PKEEGAVLFVSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKLD--RVLPYFVHLLMD-SEADVRATALETLTELLA 491 (1431)
T ss_pred ccccceeeeHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHHh--hhHHHHHHHhcC-chHHHHHHHHHHHHHHHh
Confidence 344554 56666666554445668889999999987733322232 258899999988 56889989988887775
Q ss_pred ----CCchhHHHHHhcCCHHHHHHHhcC-CCHHHHHHHHHHHHHhhcc-------------------cccccc--cCChh
Q 025930 101 ----GNDKLQLKLRGEGGIKALLGMVRC-GHPDVLAQVARGIANFAKC-------------------ESRAST--QGTKT 154 (246)
Q Consensus 101 ----~~~~~~~~l~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~nL~~~-------------------~~~~~~--~~~~~ 154 (246)
-.+.+...+.++ ..|.|-.++.+ ....++..-+..|..|+.. ++.++. +..+.
T Consensus 492 ~Vr~~~~~daniF~eY-lfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~ 570 (1431)
T KOG1240|consen 492 LVRDIPPSDANIFPEY-LFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNT 570 (1431)
T ss_pred hccCCCcccchhhHhh-hhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccch
Confidence 223333444444 56777777765 2233443333333333310 000000 11122
Q ss_pred hhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhcc--CchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHc
Q 025930 155 GRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQ--HEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLT 230 (246)
Q Consensus 155 ~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~--~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~ 230 (246)
..+++.+ ++=+..+.++.++.+-|+..-+..|.-||. ..+.. +.=.+++|+.++.+. ++.+|.+-.+.+.
T Consensus 571 ~~~~L~~-~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ks----ND~iLshLiTfLNDk-Dw~LR~aFfdsI~ 642 (1431)
T KOG1240|consen 571 ELQALHH-TVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKS----NDVILSHLITFLNDK-DWRLRGAFFDSIV 642 (1431)
T ss_pred HHHHHHH-HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhccc----ccchHHHHHHHhcCc-cHHHHHHHHhhcc
Confidence 3333331 222233456666667788777888888874 22111 122577888888744 6667766666654
No 219
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.05 E-value=47 Score=32.22 Aligned_cols=158 Identities=13% Similarity=0.154 Sum_probs=88.7
Q ss_pred CCHHHHHHHHHHHHHh-cCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHH
Q 025930 42 EDETIHRVAAGAIANL-AMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLG 120 (246)
Q Consensus 42 ~~~~~~~~a~~~L~~l-a~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ 120 (246)
..+-+++.|+.++-.| +.+++.+..+. +.+-.++.+ .++.+.-.|+.|.-..|- +.-+.+. +-.+.+..
T Consensus 155 ~s~yVRk~AA~AIpKLYsLd~e~k~qL~-----e~I~~LLaD-~splVvgsAv~AF~evCP--erldLIH--knyrklC~ 224 (968)
T KOG1060|consen 155 PSPYVRKTAAHAIPKLYSLDPEQKDQLE-----EVIKKLLAD-RSPLVVGSAVMAFEEVCP--ERLDLIH--KNYRKLCR 224 (968)
T ss_pred CcHHHHHHHHHhhHHHhcCChhhHHHHH-----HHHHHHhcC-CCCcchhHHHHHHHHhch--hHHHHhh--HHHHHHHh
Confidence 3677888899999988 45555555543 345556666 457777677777766661 1111121 12345556
Q ss_pred HhcCCCHHHHHHHHHHHHHhhcc--cccccc----cCCh----------hhhHHHHhCCC----hHHHHHcccCCChhHH
Q 025930 121 MVRCGHPDVLAQVARGIANFAKC--ESRAST----QGTK----------TGRSLLIDDGA----LPWIVQNSNNEASPIR 180 (246)
Q Consensus 121 ll~~~~~~~~~~a~~~L~nL~~~--~~~~~~----~~~~----------~~~~~l~~~g~----i~~Lv~ll~~~~~~v~ 180 (246)
++..-++.-+...+..|...|.+ +++... .++. ..+.-+...-- ++..-.++++.++.+-
T Consensus 225 ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVV 304 (968)
T KOG1060|consen 225 LLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVV 304 (968)
T ss_pred hccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHH
Confidence 66555555566666666666542 111000 0000 00000011111 2233346777899999
Q ss_pred HHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhc
Q 025930 181 RHIELALCHLAQHEVNAKDMISGGALWELVRISRD 215 (246)
Q Consensus 181 ~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~ 215 (246)
..++.+.+.||-..+.. +.+..|++++.+
T Consensus 305 mA~aql~y~lAP~~~~~------~i~kaLvrLLrs 333 (968)
T KOG1060|consen 305 MAVAQLFYHLAPKNQVT------KIAKALVRLLRS 333 (968)
T ss_pred HHHHhHHHhhCCHHHHH------HHHHHHHHHHhc
Confidence 99999999998744332 247789999975
No 220
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=82.84 E-value=14 Score=34.93 Aligned_cols=72 Identities=13% Similarity=0.164 Sum_probs=58.7
Q ss_pred HhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHH
Q 025930 110 RGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCH 189 (246)
Q Consensus 110 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~ 189 (246)
.+.+.+|.+++++++.|..++-.-+.-+-++. +...+.+.+..++|.+..-+.+.++.+|+..+.++..
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i-----------~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~ 395 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYI-----------DHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAV 395 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHh-----------hhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHH
Confidence 45568999999999998887766655555544 4666677788899999999999999999999999998
Q ss_pred hcc
Q 025930 190 LAQ 192 (246)
Q Consensus 190 La~ 192 (246)
|+.
T Consensus 396 La~ 398 (690)
T KOG1243|consen 396 LAP 398 (690)
T ss_pred HHh
Confidence 865
No 221
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=82.81 E-value=22 Score=34.74 Aligned_cols=144 Identities=10% Similarity=0.065 Sum_probs=90.8
Q ss_pred CHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC--cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHH
Q 025930 30 GLTSLLMLLGSSEDETIHRVAAGAIANLAMN--ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQL 107 (246)
Q Consensus 30 ~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~--~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~ 107 (246)
.+-.++.......+-.+...|+..|..++.. +..+... .+..+.++.-+.+ .-..++..+..++...+...
T Consensus 295 ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~--~~v~p~lld~lke-kk~~l~d~l~~~~d~~~ns~---- 367 (815)
T KOG1820|consen 295 LLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYA--KNVFPSLLDRLKE-KKSELRDALLKALDAILNST---- 367 (815)
T ss_pred HHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHH--HhhcchHHHHhhh-ccHHHHHHHHHHHHHHHhcc----
Confidence 3444555444433555566678888888665 2222222 3467777777776 34667766666666555311
Q ss_pred HHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhc-ccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHH
Q 025930 108 KLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAK-CESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELA 186 (246)
Q Consensus 108 ~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~-~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~a 186 (246)
.-....+.+..+++++++..+..+...+..... .+ +.....-.-.+.+|.++....+.+.+||..|..+
T Consensus 368 --~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~--------~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~ 437 (815)
T KOG1820|consen 368 --PLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLG--------PKTVEKETVKTLVPHLIKHINDTDKDVRKAALEA 437 (815)
T ss_pred --cHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcC--------CcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHH
Confidence 112346778889999999998887766665442 21 1111111224678999999999999999999999
Q ss_pred HHHh
Q 025930 187 LCHL 190 (246)
Q Consensus 187 L~~L 190 (246)
+..+
T Consensus 438 ~~~v 441 (815)
T KOG1820|consen 438 VAAV 441 (815)
T ss_pred HHHH
Confidence 8877
No 222
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=82.65 E-value=17 Score=30.36 Aligned_cols=105 Identities=13% Similarity=0.106 Sum_probs=70.9
Q ss_pred ccccccHHHHH--HhCC---HHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHh-cCCChHHH
Q 025930 16 IRAQSNQEKIV--EAGG---LTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAA-NAEDPQTL 89 (246)
Q Consensus 16 ~~~~~~~~~i~--~~g~---i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~-~~~~~~~~ 89 (246)
+..+.++.++. .-|+ |..|++-+..+ ..-.+..++.+++.|-... .|+.|.+.|. ..+++-++
T Consensus 169 ~l~~Ry~amF~LRn~g~EeaI~al~~~l~~~-SalfrhEvAfVfGQl~s~~----------ai~~L~k~L~d~~E~pMVR 237 (289)
T KOG0567|consen 169 PLFERYRAMFYLRNIGTEEAINALIDGLADD-SALFRHEVAFVFGQLQSPA----------AIPSLIKVLLDETEHPMVR 237 (289)
T ss_pred hHHHHHhhhhHhhccCcHHHHHHHHHhcccc-hHHHHHHHHHHHhhccchh----------hhHHHHHHHHhhhcchHHH
Confidence 44444555443 3344 66667666654 5556667888888775554 5788877665 44567788
Q ss_pred HHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 025930 90 RMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFA 141 (246)
Q Consensus 90 ~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~ 141 (246)
-.|+.||..++..+ ++++|.+.+..+++-+.+.|..+|-.+.
T Consensus 238 hEaAeALGaIa~e~----------~~~vL~e~~~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 238 HEAAEALGAIADED----------CVEVLKEYLGDEERVVRESCEVALDMLE 279 (289)
T ss_pred HHHHHHHHhhcCHH----------HHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 88999998765432 4677888888887778888887776655
No 223
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=82.31 E-value=36 Score=31.71 Aligned_cols=170 Identities=18% Similarity=0.113 Sum_probs=92.0
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcCC--cchHHHHHhcCcHHHHHHHHhcC---CChHHHHHHHHHHHHhh----C
Q 025930 31 LTSLLMLLGSSEDETIHRVAAGAIANLAMN--ETNQELIMTQGGIGLLSTTAANA---EDPQTLRMVAGAIANLC----G 101 (246)
Q Consensus 31 i~~Li~ll~~~~~~~~~~~a~~~L~~la~~--~~~~~~i~~~g~i~~L~~ll~~~---~~~~~~~~a~~aL~~L~----~ 101 (246)
+..+.+++.++.-.. ..|+..+..+... ....+ .+..+..++.+. .++.+...+..++.++. .
T Consensus 359 ~~~i~~~i~~~~~~~--~ea~~~~~~~~~~~~~Pt~~------~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~ 430 (574)
T smart00638 359 LKFIKQWIKNKKITP--LEAAQLLAVLPHTARYPTEE------ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCV 430 (574)
T ss_pred HHHHHHHHHcCCCCH--HHHHHHHHHHHHhhhcCCHH------HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhc
Confidence 667777777753221 2233333333211 11222 244555565542 34556666666666665 2
Q ss_pred CchhHHHHHhcCCHHHHHHHhc----CCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHccc-C--
Q 025930 102 NDKLQLKLRGEGGIKALLGMVR----CGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSN-N-- 174 (246)
Q Consensus 102 ~~~~~~~l~~~g~i~~L~~ll~----~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~-~-- 174 (246)
+.......+-...++.+...+. ..+.+-+...+.+|+|+.. ...++.+...+. .
T Consensus 431 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~-------------------~~~i~~l~~~l~~~~~ 491 (574)
T smart00638 431 NTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGH-------------------PSSIKVLEPYLEGAEP 491 (574)
T ss_pred CCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCC-------------------hhHHHHHHHhcCCCCC
Confidence 2221101111224555555443 3456666778888888873 134555655554 2
Q ss_pred CChhHHHHHHHHHHHhcc-CchhHHHHHhCCcHHHHHHHHhc-CCHHHHHHHHHHHH-ccChhH
Q 025930 175 EASPIRRHIELALCHLAQ-HEVNAKDMISGGALWELVRISRD-CSREDIRTLAHRTL-TSSPAF 235 (246)
Q Consensus 175 ~~~~v~~~a~~aL~~La~-~~~~~~~i~~~g~i~~L~~ll~~-~~~~~~~~~A~~~L-~~~~~~ 235 (246)
....+|..|+++|..++. +++. ..+.|+.+..+ ..+.++|-+|.-.| .+.|..
T Consensus 492 ~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~~e~~EvRiaA~~~lm~t~P~~ 547 (574)
T smart00638 492 LSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLNRAEPPEVRMAAVLVLMETKPSV 547 (574)
T ss_pred CCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCCCCChHHHHHHHHHHHhcCCCH
Confidence 256899999999999975 4433 34556666654 45666777777666 444654
No 224
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=82.16 E-value=9 Score=28.35 Aligned_cols=72 Identities=15% Similarity=0.114 Sum_probs=58.3
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccC---CChhHHHHHHHHHHHh
Q 025930 114 GIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNN---EASPIRRHIELALCHL 190 (246)
Q Consensus 114 ~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~---~~~~v~~~a~~aL~~L 190 (246)
+++.|-+-++++++.++..|+.+|-.+..+ +.+.+...+.....+..|+.++.+ .+++++..++..+...
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkN-------cg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W 110 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKN-------CGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAW 110 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHh-------CChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHH
Confidence 467788888899999999999988888763 335677888877788889999975 3788999999998887
Q ss_pred cc
Q 025930 191 AQ 192 (246)
Q Consensus 191 a~ 192 (246)
+.
T Consensus 111 ~~ 112 (133)
T cd03561 111 SE 112 (133)
T ss_pred HH
Confidence 64
No 225
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=82.12 E-value=28 Score=28.88 Aligned_cols=107 Identities=15% Similarity=0.200 Sum_probs=68.6
Q ss_pred HHHHHHHhcCC---CCHHHHHHHHHHHHHhcCCcchHHHHHhcCc--HHHHHHHHhcCC---ChHHHHHHHHHHHHhh--
Q 025930 31 LTSLLMLLGSS---EDETIHRVAAGAIANLAMNETNQELIMTQGG--IGLLSTTAANAE---DPQTLRMVAGAIANLC-- 100 (246)
Q Consensus 31 i~~Li~ll~~~---~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~--i~~L~~ll~~~~---~~~~~~~a~~aL~~L~-- 100 (246)
...+...+... ..+..+..++++++|+-.++..+..+.+... +.-.+..+.... +..++..++..+.|++
T Consensus 108 ~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~ 187 (268)
T PF08324_consen 108 ADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVL 187 (268)
T ss_dssp HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHH
Confidence 44444444443 3567788899999999888888888876433 222222222222 5778888889999998
Q ss_pred ---C--CchhHHHHHhcCCHHHHHHHhc--CCCHHHHHHHHHHHHHhhc
Q 025930 101 ---G--NDKLQLKLRGEGGIKALLGMVR--CGHPDVLAQVARGIANFAK 142 (246)
Q Consensus 101 ---~--~~~~~~~l~~~g~i~~L~~ll~--~~~~~~~~~a~~~L~nL~~ 142 (246)
. +.+.+..+ +..+...+. ..+++.....+.++++|..
T Consensus 188 ~~~~~~~~~~~~~l-----l~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~ 231 (268)
T PF08324_consen 188 LHKNRSDEEWQSEL-----LSSIIEVLSREESDEEALYRLLVALGTLLS 231 (268)
T ss_dssp HHHCTS-CCHHHHH-----HHHHHHHCHCCHTSHHHHHHHHHHHHHHHC
T ss_pred HHhcCCChHHHHHH-----HHHHHHHhccccCCHHHHHHHHHHHHHHhc
Confidence 1 12222222 344455332 3689999999999999995
No 226
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=81.55 E-value=36 Score=33.44 Aligned_cols=148 Identities=9% Similarity=0.051 Sum_probs=87.5
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhc--CCCHHHHHHHHHHHHHhhccccccccc
Q 025930 73 IGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVR--CGHPDVLAQVARGIANFAKCESRASTQ 150 (246)
Q Consensus 73 i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~--~~~~~~~~~a~~~L~nL~~~~~~~~~~ 150 (246)
+..|.++... ...++......+|+-.+..+.-...-.+..+.|..+.++. +++|.+...+-.++-.++-
T Consensus 532 ld~L~qlas~-~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q-------- 602 (1005)
T KOG2274|consen 532 LDGLLQLASK-SSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQ-------- 602 (1005)
T ss_pred HHHHHHHccc-ccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHH--------
Confidence 4455555555 3456666778888888754433344556666676665553 6677776666666666662
Q ss_pred CChhhhHHHHhCCChHHHHHcccCCC----hhHHHHHHHHHHHhcc-CchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHH
Q 025930 151 GTKTGRSLLIDDGALPWIVQNSNNEA----SPIRRHIELALCHLAQ-HEVNAKDMISGGALWELVRISRDCSREDIRTLA 225 (246)
Q Consensus 151 ~~~~~~~~l~~~g~i~~Lv~ll~~~~----~~v~~~a~~aL~~La~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A 225 (246)
...+..-+. ...+|.++..+..++ +..+..+...|..+-. .+.--....-+-+.|.+.++.--+++...--.|
T Consensus 603 -~~~~~g~m~-e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~ 680 (1005)
T KOG2274|consen 603 -IAANYGPMQ-ERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNA 680 (1005)
T ss_pred -HHHhhcchH-HHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhH
Confidence 112222222 346999999997775 6777777777776644 222222333334566666666444445555677
Q ss_pred HHHHcc
Q 025930 226 HRTLTS 231 (246)
Q Consensus 226 ~~~L~~ 231 (246)
.++|+.
T Consensus 681 ~EcLra 686 (1005)
T KOG2274|consen 681 TECLRA 686 (1005)
T ss_pred HHHHHH
Confidence 777754
No 227
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=81.47 E-value=38 Score=31.85 Aligned_cols=103 Identities=17% Similarity=0.132 Sum_probs=63.6
Q ss_pred hCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh---CCch
Q 025930 28 AGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC---GNDK 104 (246)
Q Consensus 28 ~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~---~~~~ 104 (246)
+|.+..++.-+.+. |-.++..++..|+.+...-.--......|.+..|..-+.+ ..+.++..|..+|+.+- .+++
T Consensus 90 ~~~~~h~lRg~esk-dk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~D-RE~~VR~eAv~~L~~~Qe~~~nee 167 (885)
T COG5218 90 AGTFYHLLRGTESK-DKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFD-REKAVRREAVKVLCYYQEMELNEE 167 (885)
T ss_pred HHHHHHHHhcccCc-chhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHhccCChH
Confidence 56677777777665 6677777888887776553222233333445555554444 24778889999998875 4555
Q ss_pred hHHHHHhcCCHHHHHHHhc-CCCHHHHHHHHHHHHHhhc
Q 025930 105 LQLKLRGEGGIKALLGMVR-CGHPDVLAQVARGIANFAK 142 (246)
Q Consensus 105 ~~~~l~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~nL~~ 142 (246)
|. .+-.|+..++ .++.+++..|. .|+..
T Consensus 168 n~-------~~n~l~~~vqnDPS~EVRr~al---lni~v 196 (885)
T COG5218 168 NR-------IVNLLKDIVQNDPSDEVRRLAL---LNISV 196 (885)
T ss_pred HH-------HHHHHHHHHhcCcHHHHHHHHH---HHeee
Confidence 43 2335666776 45677777665 56654
No 228
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=81.43 E-value=2 Score=30.65 Aligned_cols=41 Identities=20% Similarity=0.273 Sum_probs=35.5
Q ss_pred HHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhcCCCHHHHH
Q 025930 91 MVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLA 131 (246)
Q Consensus 91 ~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~ 131 (246)
.....+..|+..|+....+++.|+++.|+.+|.+++.++..
T Consensus 65 ~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 65 EEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 45667888889999999999999999999999998877543
No 229
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=81.24 E-value=13 Score=34.67 Aligned_cols=141 Identities=16% Similarity=0.062 Sum_probs=78.5
Q ss_pred hhhHHhHhhccccccHHHHHHhCCHHHHHHHhcCC---CCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHh-c
Q 025930 7 NTISVKSEDIRAQSNQEKIVEAGGLTSLLMLLGSS---EDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAA-N 82 (246)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~i~~~g~i~~Li~ll~~~---~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~-~ 82 (246)
+.-+++...|.+...+...+-...++.|.+.|... .+...+..+..+|+|+.... .++.+...+. +
T Consensus 420 ~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~----------~i~~l~~~l~~~ 489 (574)
T smart00638 420 AYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHPS----------SIKVLEPYLEGA 489 (574)
T ss_pred HHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCChh----------HHHHHHHhcCCC
Confidence 34445555555555443233344666666655431 23333444788888887654 3444544444 2
Q ss_pred -CCChHHHHHHHHHHHHhh-CCchhHHHHHhcCCHHHHHHHhc--CCCHHHHHHHHHHHHHhhcccccccccCChhhhHH
Q 025930 83 -AEDPQTLRMVAGAIANLC-GNDKLQLKLRGEGGIKALLGMVR--CGHPDVLAQVARGIANFAKCESRASTQGTKTGRSL 158 (246)
Q Consensus 83 -~~~~~~~~~a~~aL~~L~-~~~~~~~~l~~~g~i~~L~~ll~--~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~ 158 (246)
..+..++..|++||..++ ..+.- +-+.++.++. ..+++++..|...|...- |.
T Consensus 490 ~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~~e~~EvRiaA~~~lm~t~-----------P~---- 546 (574)
T smart00638 490 EPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLNRAEPPEVRMAAVLVLMETK-----------PS---- 546 (574)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCCCCChHHHHHHHHHHHhcC-----------CC----
Confidence 234678889999999886 33322 2345666665 456778877776665531 11
Q ss_pred HHhCCChHHHHHcccCC-ChhHHHHH
Q 025930 159 LIDDGALPWIVQNSNNE-ASPIRRHI 183 (246)
Q Consensus 159 l~~~g~i~~Lv~ll~~~-~~~v~~~a 183 (246)
...+..++..+..+ +.+|....
T Consensus 547 ---~~~l~~ia~~l~~E~~~QV~sfv 569 (574)
T smart00638 547 ---VALLQRIAELLNKEPNLQVASFV 569 (574)
T ss_pred ---HHHHHHHHHHHhhcCcHHHHHHh
Confidence 23466666666544 45554443
No 230
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=80.81 E-value=8.2 Score=28.97 Aligned_cols=72 Identities=10% Similarity=-0.015 Sum_probs=57.7
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccC------CChhHHHHHHHHH
Q 025930 114 GIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNN------EASPIRRHIELAL 187 (246)
Q Consensus 114 ~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~------~~~~v~~~a~~aL 187 (246)
++..+.+-+.++++.++-.|+.+|-.+..+ ..+.+...+...+++..|+.++.+ .++.|+...+..+
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkN-------CG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li 111 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKN-------CGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELL 111 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHH-------cCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHH
Confidence 567788888899999999999888877753 336788888888999999999964 3678999988888
Q ss_pred HHhcc
Q 025930 188 CHLAQ 192 (246)
Q Consensus 188 ~~La~ 192 (246)
..-+.
T Consensus 112 ~~W~~ 116 (139)
T cd03567 112 YSWTL 116 (139)
T ss_pred HHHHH
Confidence 76653
No 231
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.25 E-value=65 Score=31.97 Aligned_cols=109 Identities=8% Similarity=-0.019 Sum_probs=69.5
Q ss_pred hCCHHHHHHHhc------CC-CCHHHHHHHHHHHHHhcCC---cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHH
Q 025930 28 AGGLTSLLMLLG------SS-EDETIHRVAAGAIANLAMN---ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIA 97 (246)
Q Consensus 28 ~g~i~~Li~ll~------~~-~~~~~~~~a~~~L~~la~~---~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~ 97 (246)
.|.++-+++.|. .+ +++.-+..|..++++++.- +.--+...|.=.+..++..+++ +-..++..||+.+.
T Consensus 409 ~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s-~~g~Lrarac~vl~ 487 (1010)
T KOG1991|consen 409 PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQS-PYGYLRARACWVLS 487 (1010)
T ss_pred hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcC-chhHHHHHHHHHHH
Confidence 677888888887 22 2344455588888888732 1111222232234455566666 45778999999999
Q ss_pred Hhh----CCchhHHHHHhcCCHHHHHHHhc-CCCHHHHHHHHHHHHHhhc
Q 025930 98 NLC----GNDKLQLKLRGEGGIKALLGMVR-CGHPDVLAQVARGIANFAK 142 (246)
Q Consensus 98 ~L~----~~~~~~~~l~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~nL~~ 142 (246)
.++ .++.+-.. ++......|. +.+-.++..|+-+|..+-+
T Consensus 488 ~~~~~df~d~~~l~~-----ale~t~~~l~~d~~lPV~VeAalALq~fI~ 532 (1010)
T KOG1991|consen 488 QFSSIDFKDPNNLSE-----ALELTHNCLLNDNELPVRVEAALALQSFIS 532 (1010)
T ss_pred HHHhccCCChHHHHH-----HHHHHHHHhccCCcCchhhHHHHHHHHHHh
Confidence 998 23333222 3555666676 6666789999999998764
No 232
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=79.70 E-value=45 Score=31.29 Aligned_cols=65 Identities=15% Similarity=0.072 Sum_probs=35.4
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh
Q 025930 32 TSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC 100 (246)
Q Consensus 32 ~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~ 100 (246)
|-|=.|+++. -+.+...++++++.++...-.-+.+- ..+..|-.++++ .....+-.|.+.|..|+
T Consensus 267 pfL~~wls~k-~emV~lE~Ar~v~~~~~~nv~~~~~~--~~vs~L~~fL~s-~rv~~rFsA~Riln~la 331 (898)
T COG5240 267 PFLNSWLSDK-FEMVFLEAARAVCALSEENVGSQFVD--QTVSSLRTFLKS-TRVVLRFSAMRILNQLA 331 (898)
T ss_pred HHHHHHhcCc-chhhhHHHHHHHHHHHHhccCHHHHH--HHHHHHHHHHhc-chHHHHHHHHHHHHHHH
Confidence 3444555442 34566667777777765541222211 134455555665 34556667777777776
No 233
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=79.55 E-value=11 Score=28.44 Aligned_cols=71 Identities=10% Similarity=0.045 Sum_probs=57.5
Q ss_pred CCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC--cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh
Q 025930 29 GGLTSLLMLLGSSEDETIHRVAAGAIANLAMN--ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC 100 (246)
Q Consensus 29 g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~--~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~ 100 (246)
.++..|-..|+++ ++.++..|...|-.+..+ ......+...+.+..|..++....++.+++.++..+..-+
T Consensus 41 ~a~ral~krl~~~-n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 113 (142)
T cd03569 41 YAMRALKKRLLSK-NPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWA 113 (142)
T ss_pred HHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHH
Confidence 3488888899886 888899999999988877 4566677788888888888886667888888888887766
No 234
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=79.46 E-value=5.8 Score=32.66 Aligned_cols=80 Identities=10% Similarity=0.136 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhhCCchhHHHHHhcCC-------HHHHHHHhc-CCCHHHHHHHHHHHHHhhcccccccccCChh-hhHHH
Q 025930 89 LRMVAGAIANLCGNDKLQLKLRGEGG-------IKALLGMVR-CGHPDVLAQVARGIANFAKCESRASTQGTKT-GRSLL 159 (246)
Q Consensus 89 ~~~a~~aL~~L~~~~~~~~~l~~~g~-------i~~L~~ll~-~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~-~~~~l 159 (246)
+..|+.+|+.||-.+.|...+...+- +..|++++. .+++-.++-|+.+|.||+. ++.. .|..-
T Consensus 141 qrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~--------~~~~~~r~iA 212 (257)
T PF12031_consen 141 QRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQ--------GDEAAARAIA 212 (257)
T ss_pred HHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhc--------ccHHHHHHHH
Confidence 77899999999977777666655544 344555554 4677889999999999995 3333 34444
Q ss_pred HhCCChHHHHHcccCCC
Q 025930 160 IDDGALPWIVQNSNNEA 176 (246)
Q Consensus 160 ~~~g~i~~Lv~ll~~~~ 176 (246)
.+.+.|..|+..+....
T Consensus 213 ~q~~~i~~Li~FiE~a~ 229 (257)
T PF12031_consen 213 MQKPCISHLIAFIEDAE 229 (257)
T ss_pred HhhchHHHHHHHHHHHH
Confidence 57788999999886543
No 235
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=78.43 E-value=12 Score=25.87 Aligned_cols=67 Identities=15% Similarity=0.119 Sum_probs=47.9
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh
Q 025930 31 LTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC 100 (246)
Q Consensus 31 i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~ 100 (246)
.+..+..+.++ .+.+|-++...|.++-...+ ...+-..+.+..+...+++ +|+-+.-+|..+|..|+
T Consensus 5 ~~~al~~L~dp-~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d-~DsyVYL~aI~~L~~La 71 (92)
T PF10363_consen 5 LQEALSDLNDP-LPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKD-EDSYVYLNAIKGLAALA 71 (92)
T ss_pred HHHHHHHccCC-CcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCC-CCchHHHHHHHHHHHHH
Confidence 45566777776 66789999999999977654 1112223455666777777 57888889999999988
No 236
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=77.73 E-value=18 Score=27.13 Aligned_cols=70 Identities=10% Similarity=-0.029 Sum_probs=55.4
Q ss_pred CHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC--cchHHHHHhcCcHHHHHHHHhc-----CCChHHHHHHHHHHHHhh
Q 025930 30 GLTSLLMLLGSSEDETIHRVAAGAIANLAMN--ETNQELIMTQGGIGLLSTTAAN-----AEDPQTLRMVAGAIANLC 100 (246)
Q Consensus 30 ~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~--~~~~~~i~~~g~i~~L~~ll~~-----~~~~~~~~~a~~aL~~L~ 100 (246)
++..+...++++ ++.++..|...|-.|..+ +.....|...+.+.-++.++.. ..++.++...+..+..-+
T Consensus 39 a~rai~krl~~~-n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 39 AVRLLAHKIQSP-QEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 478889999886 788899999999999877 5566778888888888888853 246788888887776655
No 237
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.55 E-value=66 Score=32.58 Aligned_cols=180 Identities=10% Similarity=0.045 Sum_probs=92.0
Q ss_pred hhhhHHhHhhccccccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcC-----Cc-chH-HHHHhcCcHHHHHH
Q 025930 6 LNTISVKSEDIRAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAM-----NE-TNQ-ELIMTQGGIGLLST 78 (246)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~-----~~-~~~-~~i~~~g~i~~L~~ 78 (246)
++++.++.++.. .++. .++..-+.+.++.. +.. +...++.|..+|..++. ++ +.+ .. .+.-++.
T Consensus 718 l~~L~~L~~~~~-~e~~-~~i~k~I~EvIL~~-Ke~-n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~-----~lnefl~ 788 (1176)
T KOG1248|consen 718 LKCLKRLLKLLS-AEHC-DLIPKLIPEVILSL-KEV-NVKARRNAFALLVFIGAIQSSLDDGNEPASA-----ILNEFLS 788 (1176)
T ss_pred HHHHHHHHHhcc-HHHH-HHHHHHHHHHHHhc-ccc-cHHHHhhHHHHHHHHHHHHhhhcccccchHH-----HHHHHHH
Confidence 345556666643 2332 33333344444444 654 77778888777777762 11 111 11 2333333
Q ss_pred HHhcC--CChHHHHHH-HHHHHHhhCC-chhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChh
Q 025930 79 TAANA--EDPQTLRMV-AGAIANLCGN-DKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKT 154 (246)
Q Consensus 79 ll~~~--~~~~~~~~a-~~aL~~L~~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~ 154 (246)
++..+ .+......+ .-++..+... ...-..-.-.+.+.-+...|.+.++++.+.|++.+.-++. ..++
T Consensus 789 ~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~--------~~pe 860 (1176)
T KOG1248|consen 789 IISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVY--------KFPE 860 (1176)
T ss_pred HHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--------cCCH
Confidence 33322 122111111 3333333211 0000001111234555666778999999999999998874 2233
Q ss_pred hhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhcc--CchhHHHHHh
Q 025930 155 GRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQ--HEVNAKDMIS 202 (246)
Q Consensus 155 ~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~--~~~~~~~i~~ 202 (246)
..-.-.....+|.+..+.++..-.++...-..|-.|.. ..+.-+.+..
T Consensus 861 ~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe~~~p 910 (1176)
T KOG1248|consen 861 ECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEELESFLP 910 (1176)
T ss_pred HHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHHhhCH
Confidence 33322223468888888888788888888777777754 3333344443
No 238
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=76.11 E-value=13 Score=27.46 Aligned_cols=72 Identities=11% Similarity=0.022 Sum_probs=56.9
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCC--hhHHHHHHHHHHHhc
Q 025930 114 GIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEA--SPIRRHIELALCHLA 191 (246)
Q Consensus 114 ~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~--~~v~~~a~~aL~~La 191 (246)
+++.+-+-+.++++.++..|+.+|-.+..+ ..+.+...+...+++..|+.++.+.. +.|+..++..+..-+
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkN-------cg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~ 110 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKN-------CGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWA 110 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHH-------CCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHH
Confidence 466788888899999999999888887753 33678888888889999999887653 348888888887775
Q ss_pred c
Q 025930 192 Q 192 (246)
Q Consensus 192 ~ 192 (246)
.
T Consensus 111 ~ 111 (133)
T smart00288 111 D 111 (133)
T ss_pred H
Confidence 4
No 239
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=76.07 E-value=20 Score=26.49 Aligned_cols=70 Identities=13% Similarity=0.055 Sum_probs=54.8
Q ss_pred CHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC--cchHHHHHhcCcHHHHHHHHhc--CCChHHHHHHHHHHHHhh
Q 025930 30 GLTSLLMLLGSSEDETIHRVAAGAIANLAMN--ETNQELIMTQGGIGLLSTTAAN--AEDPQTLRMVAGAIANLC 100 (246)
Q Consensus 30 ~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~--~~~~~~i~~~g~i~~L~~ll~~--~~~~~~~~~a~~aL~~L~ 100 (246)
++..|-..|+++ +|.++..|...|-.|..+ +.....+.....+.-++.++.. ..++.++..++..+.+.+
T Consensus 38 a~raL~krl~~~-n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~ 111 (133)
T cd03561 38 AARAIRKKIKYG-NPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWS 111 (133)
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHH
Confidence 478888889886 888899999999999887 3355666666777778888875 457888888888887766
No 240
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.77 E-value=60 Score=33.00 Aligned_cols=62 Identities=18% Similarity=0.180 Sum_probs=52.8
Q ss_pred hhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhcc-CchhHHHHHhCCcHHHHHHHHh
Q 025930 153 KTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQ-HEVNAKDMISGGALWELVRISR 214 (246)
Q Consensus 153 ~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~-~~~~~~~i~~~g~i~~L~~ll~ 214 (246)
..-++.+.+.|++..|.+.+-...|..+..-+..+..++. ++.+.+..-..|.+..|++++.
T Consensus 898 npdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiy 960 (2799)
T KOG1788|consen 898 NPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIY 960 (2799)
T ss_pred CchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhh
Confidence 3446778889999999999888999999999999999987 7778777777899999988875
No 241
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=75.17 E-value=9.8 Score=35.36 Aligned_cols=94 Identities=17% Similarity=0.073 Sum_probs=57.7
Q ss_pred CCHHHHHHH-hcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHccc-CCChhHHHHHHHHHHHh
Q 025930 113 GGIKALLGM-VRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSN-NEASPIRRHIELALCHL 190 (246)
Q Consensus 113 g~i~~L~~l-l~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~-~~~~~v~~~a~~aL~~L 190 (246)
|++..++.. .+..+.++++.|..+|.-.|..+ ...++..|++|. ++++.+|...+.+|..-
T Consensus 551 ~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D-----------------~~~lv~tvelLs~shN~hVR~g~AvaLGia 613 (926)
T COG5116 551 GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDD-----------------RDLLVGTVELLSESHNFHVRAGVAVALGIA 613 (926)
T ss_pred hhHhhhheeecccCchHHHHHHHHheeeeEecC-----------------cchhhHHHHHhhhccchhhhhhhHHHhhhh
Confidence 345555555 34567788888888888777421 245677777664 45889999889998887
Q ss_pred ccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHc
Q 025930 191 AQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLT 230 (246)
Q Consensus 191 a~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~ 230 (246)
|.+..... ++..|-.++. +..+-+|..|.-++.
T Consensus 614 cag~G~~~------a~diL~~L~~-D~~dfVRQ~AmIa~~ 646 (926)
T COG5116 614 CAGTGDKV------ATDILEALMY-DTNDFVRQSAMIAVG 646 (926)
T ss_pred hcCCccHH------HHHHHHHHhh-CcHHHHHHHHHHHHH
Confidence 76544321 2333444444 455555655554443
No 242
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=75.17 E-value=29 Score=32.62 Aligned_cols=164 Identities=13% Similarity=0.100 Sum_probs=88.3
Q ss_pred HHHHHHHhcCC---CCHHHHHHHHHHHHHhcCCc-c---------hHHHHHhcCcHHHHHHHHh---cCCChHHHHHHHH
Q 025930 31 LTSLLMLLGSS---EDETIHRVAAGAIANLAMNE-T---------NQELIMTQGGIGLLSTTAA---NAEDPQTLRMVAG 94 (246)
Q Consensus 31 i~~Li~ll~~~---~~~~~~~~a~~~L~~la~~~-~---------~~~~i~~~g~i~~L~~ll~---~~~~~~~~~~a~~ 94 (246)
+..+..+++++ .++.++..|.-+++.+.... . ..........++.+...+. +..|..-...++.
T Consensus 433 l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Lk 512 (618)
T PF01347_consen 433 LKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLK 512 (618)
T ss_dssp HHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHH
Confidence 44555555542 24555666666666664331 1 1112222334666665555 3345566668889
Q ss_pred HHHHhhCCchhHHHHHhcCCHHHHHHHhcCC---CHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHc
Q 025930 95 AIANLCGNDKLQLKLRGEGGIKALLGMVRCG---HPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQN 171 (246)
Q Consensus 95 aL~~L~~~~~~~~~l~~~g~i~~L~~ll~~~---~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~l 171 (246)
||.|+-.. ..++.+...+... +..++..|+.+|+.+... .+ ..+.+.+..+
T Consensus 513 aLgN~g~~----------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~--------~~--------~~v~~~l~~I 566 (618)
T PF01347_consen 513 ALGNLGHP----------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKH--------CP--------EKVREILLPI 566 (618)
T ss_dssp HHHHHT-G----------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT---------H--------HHHHHHHHHH
T ss_pred HhhccCCc----------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhc--------Cc--------HHHHHHHHHH
Confidence 99997432 2467777777654 577888999999988632 12 1345666777
Q ss_pred ccCC--ChhHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 025930 172 SNNE--ASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTL 229 (246)
Q Consensus 172 l~~~--~~~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L 229 (246)
+.+. ++++|-.|...|... +|... .+..+...+..+....+.......|
T Consensus 567 ~~n~~e~~EvRiaA~~~lm~~--~P~~~-------~l~~i~~~l~~E~~~QV~sfv~S~L 617 (618)
T PF01347_consen 567 FMNTTEDPEVRIAAYLILMRC--NPSPS-------VLQRIAQSLWNEPSNQVASFVYSHL 617 (618)
T ss_dssp HH-TTS-HHHHHHHHHHHHHT-----HH-------HHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred hcCCCCChhHHHHHHHHHHhc--CCCHH-------HHHHHHHHHhhCchHHHHHHHHHhc
Confidence 7554 678888887776653 22221 3455666666555566655554443
No 243
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=74.31 E-value=22 Score=35.32 Aligned_cols=125 Identities=10% Similarity=0.124 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHh
Q 025930 44 ETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMV 122 (246)
Q Consensus 44 ~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll 122 (246)
+.++.++.-+|++++.- +...+. .+|.|+.-|...++..++.+..-|+..+|.. ..++-.-.+|.+...|
T Consensus 945 ~~vra~~vvTlakmcLah~~LaKr-----~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~----YTam~d~YiP~I~~~L 1015 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDRLAKR-----LMPMLVKELEYNTAHAIRNNIVLAMGDICSS----YTAMTDRYIPMIAASL 1015 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhhhHHHHhcceeeeehhhHHH----HHHHHHHhhHHHHHHh
Confidence 34666678888888644 333322 4788887777656667777777777777632 1122234689999999
Q ss_pred cCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCC--hHHHHHcccCCChhHHHHHHHHHHHhc
Q 025930 123 RCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGA--LPWIVQNSNNEASPIRRHIELALCHLA 191 (246)
Q Consensus 123 ~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~--i~~Lv~ll~~~~~~v~~~a~~aL~~La 191 (246)
+.+++-++++....|.+|-.. + .+-..|. +..+..++ +.+++++..|-.++..+-
T Consensus 1016 ~Dp~~iVRrqt~ilL~rLLq~----------~---~vKw~G~Lf~Rf~l~l~-D~~edIr~~a~f~~~~vL 1072 (1529)
T KOG0413|consen 1016 CDPSVIVRRQTIILLARLLQF----------G---IVKWNGELFIRFMLALL-DANEDIRNDAKFYISEVL 1072 (1529)
T ss_pred cCchHHHHHHHHHHHHHHHhh----------h---hhhcchhhHHHHHHHHc-ccCHHHHHHHHHHHHHHH
Confidence 999999999999999998731 1 1122332 45555555 478888888888887763
No 244
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.89 E-value=66 Score=31.13 Aligned_cols=65 Identities=18% Similarity=0.123 Sum_probs=36.4
Q ss_pred hCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHH
Q 025930 28 AGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIA 97 (246)
Q Consensus 28 ~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~ 97 (246)
...+|.+-..|.+. ..-+++.|..+++.+-.. -+.++ -++-+.+-..+..+.|+...++|.-.|.
T Consensus 133 epl~p~IracleHr-hsYVRrNAilaifsIyk~---~~~L~-pDapeLi~~fL~~e~DpsCkRNAFi~L~ 197 (948)
T KOG1058|consen 133 EPLMPSIRACLEHR-HSYVRRNAILAIFSIYKN---FEHLI-PDAPELIESFLLTEQDPSCKRNAFLMLF 197 (948)
T ss_pred hhhHHHHHHHHhCc-chhhhhhhheeehhHHhh---hhhhc-CChHHHHHHHHHhccCchhHHHHHHHHH
Confidence 45566677777775 777888877777776544 11111 0122233344444456766666665554
No 245
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=73.70 E-value=93 Score=30.34 Aligned_cols=128 Identities=17% Similarity=0.127 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHh---hCCchhHHHHHhcCCHHHHHH
Q 025930 44 ETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANL---CGNDKLQLKLRGEGGIKALLG 120 (246)
Q Consensus 44 ~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L---~~~~~~~~~l~~~g~i~~L~~ 120 (246)
-.++++|+..+..++..-...+..- ..++.++....+. +--.+...+.++..+ .+.+-..+. .+|.+..
T Consensus 532 ~~Ir~~aa~~l~~l~~~~G~~w~~~--~~i~k~L~~~~q~-~y~~R~t~l~si~~la~v~g~ei~~~~-----Llp~~~~ 603 (759)
T KOG0211|consen 532 YSIREAAARNLPALVETFGSEWARL--EEIPKLLAMDLQD-NYLVRMTTLFSIHELAEVLGQEITCED-----LLPVFLD 603 (759)
T ss_pred HHHHHHHHHHhHHHHHHhCcchhHH--HhhHHHHHHhcCc-ccchhhHHHHHHHHHHHHhccHHHHHH-----HhHHHHH
Confidence 3466777777766654432222221 1355555555542 233343444444433 344433333 4788899
Q ss_pred HhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHh
Q 025930 121 MVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHL 190 (246)
Q Consensus 121 ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~L 190 (246)
+..++.++++-+++..|--+... ......+..+.|.+..+-.+.+.++|..|..++..+
T Consensus 604 l~~D~vanVR~nvak~L~~i~~~-----------L~~~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i 662 (759)
T KOG0211|consen 604 LVKDPVANVRINVAKHLPKILKL-----------LDESVRDEEVLPLLETLSSDQELDVRYRAILAFGSI 662 (759)
T ss_pred hccCCchhhhhhHHHHHHHHHhh-----------cchHHHHHHHHHHHHHhccCcccchhHHHHHHHHHH
Confidence 99999999999999888877632 122333455678888888888889999887776655
No 246
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=73.63 E-value=19 Score=26.60 Aligned_cols=70 Identities=9% Similarity=-0.005 Sum_probs=53.4
Q ss_pred CHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC--cchHHHHHhcCcHHHHHHHHhcCCChH-HHHHHHHHHHHhh
Q 025930 30 GLTSLLMLLGSSEDETIHRVAAGAIANLAMN--ETNQELIMTQGGIGLLSTTAANAEDPQ-TLRMVAGAIANLC 100 (246)
Q Consensus 30 ~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~--~~~~~~i~~~g~i~~L~~ll~~~~~~~-~~~~a~~aL~~L~ 100 (246)
++..|-..|+++ +|.++..|...|-.+..+ +.....+...+.+..|..+++...+.. +++.++..+..-+
T Consensus 38 a~r~l~krl~~~-n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~ 110 (133)
T smart00288 38 AVRLLKKRLNNK-NPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWA 110 (133)
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHH
Confidence 477888888886 888899999999999877 456667777788888888888654433 7777777776654
No 247
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=73.32 E-value=3.9 Score=37.05 Aligned_cols=100 Identities=16% Similarity=0.034 Sum_probs=57.8
Q ss_pred CChHHHHHHHHHHHHhhCC----chhHHHHHhcCCHHHHHHHh-cCCCHHHHHHHHHHHHHhhcccccccccCChhhhHH
Q 025930 84 EDPQTLRMVAGAIANLCGN----DKLQLKLRGEGGIKALLGMV-RCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSL 158 (246)
Q Consensus 84 ~~~~~~~~a~~aL~~L~~~----~~~~~~l~~~g~i~~L~~ll-~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~ 158 (246)
+..+++.++..+|.|+... .+..-.....|.+..+...- -...-.++.+++-++.||-+++..+-. .
T Consensus 496 d~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq--------~ 567 (728)
T KOG4535|consen 496 DKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQ--------T 567 (728)
T ss_pred hhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCcccccc--------C
Confidence 4456888999999998721 11211222222222222222 234566899999999999965321111 1
Q ss_pred HHh-CCChHHHHHcccCC-ChhHHHHHHHHHHHhc
Q 025930 159 LID-DGALPWIVQNSNNE-ASPIRRHIELALCHLA 191 (246)
Q Consensus 159 l~~-~g~i~~Lv~ll~~~-~~~v~~~a~~aL~~La 191 (246)
+.. ..+++.|..++.+. |-++|..|+.+|.--+
T Consensus 568 ~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~ 602 (728)
T KOG4535|consen 568 APWASQAFNALTSLVTSCKNFKVRIRAAAALSVPG 602 (728)
T ss_pred CCchHHHHHHHHHHHHHhccceEeehhhhhhcCCC
Confidence 111 23577777777544 7788888888876443
No 248
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=72.16 E-value=16 Score=29.09 Aligned_cols=145 Identities=14% Similarity=0.097 Sum_probs=58.9
Q ss_pred CCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC---cchHHHHHhcCcHHHHHHHHhcCCC-----------------hHH
Q 025930 29 GGLTSLLMLLGSSEDETIHRVAAGAIANLAMN---ETNQELIMTQGGIGLLSTTAANAED-----------------PQT 88 (246)
Q Consensus 29 g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~---~~~~~~i~~~g~i~~L~~ll~~~~~-----------------~~~ 88 (246)
+.+..|+.++..+++.. . -+.....+ ...++.+.+.|++..++.+++...+ .++
T Consensus 4 ~~l~~Li~f~~~~~~~~-~-----~~~~~~~~~~~~~rQ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l 77 (207)
T PF01365_consen 4 KILRDLIKFCMGSEEED-Q-----HLLKQRNGQPNRERQKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKEL 77 (207)
T ss_dssp HHHHHHHHHHTTTS--S-S------SHHCCCCHHHHHHHHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHH
T ss_pred HHHHHHHhHhCCCCccc-c-----hHHHHhcCCcchhhHHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHH
Confidence 34677887777653322 1 12333333 3566778889999999888864211 356
Q ss_pred HHHHHHHHHHhh-CCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHH
Q 025930 89 LRMVAGAIANLC-GNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPW 167 (246)
Q Consensus 89 ~~~a~~aL~~L~-~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~ 167 (246)
...++..|..+| .+.+|+..+.+. ++-++..+.......--.+..++..+-. ++++....+.+. .+..
T Consensus 78 ~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~~~~~~~~~~d~l~~i~~--------dN~~L~~~i~e~-~I~~ 146 (207)
T PF01365_consen 78 FRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQLQIGYGLGALDVLTEIFR--------DNPELCESISEE-HIEK 146 (207)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCCCH-TTHHHHHHHHHHHT--------T----------------
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHhhccCCchHHHHHHHHHH--------CcHHHHHHhhHH-HHHH
Confidence 778899999999 778999888764 3322333322111111234455555542 444555555544 4888
Q ss_pred HHHcccCCChhHHHHHHHHHHHhcc
Q 025930 168 IVQNSNNEASPIRRHIELALCHLAQ 192 (246)
Q Consensus 168 Lv~ll~~~~~~v~~~a~~aL~~La~ 192 (246)
++.++.....+. .-+..|..+|.
T Consensus 147 ~i~ll~~~gr~~--~~L~~L~~lc~ 169 (207)
T PF01365_consen 147 FIELLRKHGRQP--RYLDFLSSLCV 169 (207)
T ss_dssp -------------------------
T ss_pred HHHHHHHcCCCh--HHHHHHhhhcc
Confidence 888887644222 23455555554
No 249
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=71.96 E-value=38 Score=32.26 Aligned_cols=129 Identities=12% Similarity=0.034 Sum_probs=76.0
Q ss_pred cHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHh-cCCCHHHHHHHHHHHHHhhccccccccc
Q 025930 72 GIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMV-RCGHPDVLAQVARGIANFAKCESRASTQ 150 (246)
Q Consensus 72 ~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll-~~~~~~~~~~a~~~L~nL~~~~~~~~~~ 150 (246)
.+|.|..-+++ .+..+++.++..+-..+..-+ ...+..-++|.+-.+. +..+..++.+++.++.-+.
T Consensus 390 IlplL~~S~~~-~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~--------- 457 (700)
T KOG2137|consen 390 ILPLLYRSLED-SDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI--------- 457 (700)
T ss_pred HHHHHHHHhcC-cchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH---------
Confidence 34444444444 456777777777777663322 2233334456555543 3456677778877777766
Q ss_pred CChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhc
Q 025930 151 GTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRD 215 (246)
Q Consensus 151 ~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~ 215 (246)
+..+...-..-+.++....+..+|.+....+.+..++......++.+.....+|.++-+...
T Consensus 458 ---q~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~ 519 (700)
T KOG2137|consen 458 ---QRLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVA 519 (700)
T ss_pred ---HHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhc
Confidence 22221111223455556666678999888888888887744333555566777777766654
No 250
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=71.47 E-value=16 Score=32.27 Aligned_cols=84 Identities=11% Similarity=0.031 Sum_probs=63.3
Q ss_pred CChHHHHHcccCCChhHHHHHHHHHHHhccCch--hHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHcc---------
Q 025930 163 GALPWIVQNSNNEASPIRRHIELALCHLAQHEV--NAKDMISGGALWELVRISRDCSREDIRTLAHRTLTS--------- 231 (246)
Q Consensus 163 g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~~--~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~--------- 231 (246)
.++..+..-+...++.|...|+..+..+..|.. -|..+........|..++.+..+..+++.-..+++.
T Consensus 45 d~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K~Dp 124 (462)
T KOG2199|consen 45 DCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFKKDP 124 (462)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccCc
Confidence 468888999999999999999999999977443 477777888999999999866666666555555442
Q ss_pred ----ChhHHHHHHHhhhcC
Q 025930 232 ----SPAFQAEMRRLRIDY 246 (246)
Q Consensus 232 ----~~~~~~e~~~~~~~~ 246 (246)
++.+-.-++++|+.|
T Consensus 125 ~lsLi~~l~~klk~~g~~f 143 (462)
T KOG2199|consen 125 SLSLISALYKKLKEEGITF 143 (462)
T ss_pred chhHHHHHHHHHHHcCCCc
Confidence 556666677777665
No 251
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=70.73 E-value=46 Score=25.56 Aligned_cols=90 Identities=7% Similarity=0.064 Sum_probs=60.4
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhh-hHHHHhCCC--hHHHHHcccCC-ChhHHHHHHHHHHH
Q 025930 114 GIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTG-RSLLIDDGA--LPWIVQNSNNE-ASPIRRHIELALCH 189 (246)
Q Consensus 114 ~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~-~~~l~~~g~--i~~Lv~ll~~~-~~~v~~~a~~aL~~ 189 (246)
.+..+..+++++++.-+..++..+.-.+. ++ .+.+.+.+. +..++..++.+ .+.+.+.++.+|..
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~-----------~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~ 94 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVE-----------QCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTR 94 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHH-----------HhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 35567888889888889999888888773 33 455544443 77788888766 45678888888888
Q ss_pred hcc----CchhHHHHHh---CCcHHHHHHHHh
Q 025930 190 LAQ----HEVNAKDMIS---GGALWELVRISR 214 (246)
Q Consensus 190 La~----~~~~~~~i~~---~g~i~~L~~ll~ 214 (246)
+-. .++...++.. .+.++.++.+++
T Consensus 95 l~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~ 126 (165)
T PF08167_consen 95 LFDLIRGKPTLTREIATPNLPKFIQSLLQLLQ 126 (165)
T ss_pred HHHHhcCCCchHHHHhhccHHHHHHHHHHHHh
Confidence 843 4443444433 355566666665
No 252
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=70.69 E-value=23 Score=34.74 Aligned_cols=149 Identities=13% Similarity=0.033 Sum_probs=89.7
Q ss_pred hCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhc-CcHHHHHHHHhcCCChHHHHHHHHHHHHhh-CCchh
Q 025930 28 AGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQ-GGIGLLSTTAANAEDPQTLRMVAGAIANLC-GNDKL 105 (246)
Q Consensus 28 ~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~-g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~-~~~~~ 105 (246)
+.++|.|++.+.+. +...+..=..+|.++-.+-..+..+-+. ...|.|++.++- +|..++-.+...+.-+. ..+..
T Consensus 866 ~~ivP~l~~~~~t~-~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~-~D~~v~vstl~~i~~~l~~~~tL 943 (1030)
T KOG1967|consen 866 CDIVPILVSKFETA-PGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSM-PDVIVRVSTLRTIPMLLTESETL 943 (1030)
T ss_pred HhhHHHHHHHhccC-CccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCC-CccchhhhHhhhhhHHHHhcccc
Confidence 46799999999853 3333444566677775553233222222 235666777776 67888777888877665 22322
Q ss_pred HHHHHhcCCHHHHHHHhcCCC---HHHHHHHHHHHHHhhc-ccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHH
Q 025930 106 QLKLRGEGGIKALLGMVRCGH---PDVLAQVARGIANFAK-CESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRR 181 (246)
Q Consensus 106 ~~~l~~~g~i~~L~~ll~~~~---~~~~~~a~~~L~nL~~-~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~ 181 (246)
...-+ .-.+|.++.+=++.+ .-++..|...|..|.. .+ ..+-.-....++..|...|.+..--+|+
T Consensus 944 ~t~~~-~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P---------~~~l~~fr~~Vl~al~k~LdDkKRlVR~ 1013 (1030)
T KOG1967|consen 944 QTEHL-STLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLP---------TKSLLSFRPLVLRALIKILDDKKRLVRK 1013 (1030)
T ss_pred chHHH-hHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCC---------CcccccccHHHHHHhhhccCcHHHHHHH
Confidence 22111 124666666555554 4578888898888885 22 2222222235778888888777777999
Q ss_pred HHHHHHH
Q 025930 182 HIELALC 188 (246)
Q Consensus 182 ~a~~aL~ 188 (246)
.|..+-.
T Consensus 1014 eAv~tR~ 1020 (1030)
T KOG1967|consen 1014 EAVDTRQ 1020 (1030)
T ss_pred HHHHHhh
Confidence 9887643
No 253
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=69.10 E-value=71 Score=30.47 Aligned_cols=151 Identities=16% Similarity=0.115 Sum_probs=91.8
Q ss_pred HHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCC
Q 025930 23 EKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGN 102 (246)
Q Consensus 23 ~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~ 102 (246)
+.++..-.++.|+..+.-++ . -.....-+..+...-+... .+.+.+|.|+++++. .|..++..-+.-+-+..
T Consensus 287 e~i~~~kvlp~Ll~~~~~g~--a-~~~~ltpl~k~~k~ld~~e--yq~~i~p~l~kLF~~-~Dr~iR~~LL~~i~~~i-- 358 (690)
T KOG1243|consen 287 EEIIASKVLPILLAALEFGD--A-ASDFLTPLFKLGKDLDEEE--YQVRIIPVLLKLFKS-PDRQIRLLLLQYIEKYI-- 358 (690)
T ss_pred HHHHHHHHHHHHHHHhhccc--c-chhhhhHHHHhhhhccccc--cccchhhhHHHHhcC-cchHHHHHHHHhHHHHh--
Confidence 44555556666666665542 1 1222333444433311111 555678999999998 57777744333332221
Q ss_pred chhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHH
Q 025930 103 DKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRH 182 (246)
Q Consensus 103 ~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~ 182 (246)
+-....+++.-++|.+..-+.+.++.+++..+..+..|+.. .-+...+...+..|..+--+++..+|..
T Consensus 359 ~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~k-----------L~~~~Ln~Ellr~~ar~q~d~~~~irtn 427 (690)
T KOG1243|consen 359 DHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPK-----------LSKRNLNGELLRYLARLQPDEHGGIRTN 427 (690)
T ss_pred hhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhh-----------hchhhhcHHHHHHHHhhCccccCccccc
Confidence 22334556667889999999999999999999988888742 1122233334666666665566777777
Q ss_pred HHHHHHHhcc
Q 025930 183 IELALCHLAQ 192 (246)
Q Consensus 183 a~~aL~~La~ 192 (246)
..-||..++.
T Consensus 428 tticlgki~~ 437 (690)
T KOG1243|consen 428 TTICLGKIAP 437 (690)
T ss_pred ceeeeccccc
Confidence 7777777765
No 254
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=66.74 E-value=61 Score=25.53 Aligned_cols=111 Identities=15% Similarity=0.116 Sum_probs=69.2
Q ss_pred CHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHh-cC----c---------------HHHHHHHHhcCCChHHH
Q 025930 30 GLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMT-QG----G---------------IGLLSTTAANAEDPQTL 89 (246)
Q Consensus 30 ~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~-~g----~---------------i~~L~~ll~~~~~~~~~ 89 (246)
.-+.|+..+-.+.++.+|..|+.+|..+-.+...--...+ .+ . ...|+..+..+.+..+.
T Consensus 40 ~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l 119 (182)
T PF13251_consen 40 ATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVL 119 (182)
T ss_pred CCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHH
Confidence 4556666655555788888899999888666322222222 11 1 11455556665677777
Q ss_pred HHHHHHHHHhhCCchhHHHHHhcCCHH----HHHHHhcCCCHHHHHHHHHHHHHhhc
Q 025930 90 RMVAGAIANLCGNDKLQLKLRGEGGIK----ALLGMVRCGHPDVLAQVARGIANFAK 142 (246)
Q Consensus 90 ~~a~~aL~~L~~~~~~~~~l~~~g~i~----~L~~ll~~~~~~~~~~a~~~L~nL~~ 142 (246)
.+.+.+|..|..+....+. +.|.++ .+-.++.+.|++++..+..++..+..
T Consensus 120 ~q~lK~la~Lv~~tPY~rL--~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s 174 (182)
T PF13251_consen 120 TQLLKCLAVLVQATPYHRL--PPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLS 174 (182)
T ss_pred HHHHHHHHHHHccCChhhc--CHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 7889999988854333111 224444 44455567889999999988888764
No 255
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=66.48 E-value=46 Score=33.22 Aligned_cols=120 Identities=16% Similarity=0.258 Sum_probs=80.1
Q ss_pred hHHHHHHHHHHHHhh-CCchhHHHHHhcCCHHHHHHHhc-CCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCC
Q 025930 86 PQTLRMVAGAIANLC-GNDKLQLKLRGEGGIKALLGMVR-CGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDG 163 (246)
Q Consensus 86 ~~~~~~a~~aL~~L~-~~~~~~~~l~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g 163 (246)
+.++..+.-.|.++| .++...++. +|.|++-|. +.+-.++.+.+-+++.+|. .-.+|+ ..
T Consensus 945 ~~vra~~vvTlakmcLah~~LaKr~-----~P~lvkeLe~~~~~aiRnNiV~am~D~C~------------~YTam~-d~ 1006 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDRLAKRL-----MPMLVKELEYNTAHAIRNNIVLAMGDICS------------SYTAMT-DR 1006 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHH-----HHHHHHHHHhhhHHHHhcceeeeehhhHH------------HHHHHH-HH
Confidence 456777888889998 444444433 688887775 4556677777777777773 122233 35
Q ss_pred ChHHHHHcccCCChhHHHHHHHHHHHhccCchhHHHHHhCCc---HHHHHHHHhcCCHHHHHHHHHHHHc
Q 025930 164 ALPWIVQNSNNEASPIRRHIELALCHLAQHEVNAKDMISGGA---LWELVRISRDCSREDIRTLAHRTLT 230 (246)
Q Consensus 164 ~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~g~---i~~L~~ll~~~~~~~~~~~A~~~L~ 230 (246)
.+|.+...|+++++-+|+++.-.|.+|-. ..++.-+| ++.+..++ +.+++++..|.=.+.
T Consensus 1007 YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq-----~~~vKw~G~Lf~Rf~l~l~--D~~edIr~~a~f~~~ 1069 (1529)
T KOG0413|consen 1007 YIPMIAASLCDPSVIVRRQTIILLARLLQ-----FGIVKWNGELFIRFMLALL--DANEDIRNDAKFYIS 1069 (1529)
T ss_pred hhHHHHHHhcCchHHHHHHHHHHHHHHHh-----hhhhhcchhhHHHHHHHHc--ccCHHHHHHHHHHHH
Confidence 79999999999999999999999999854 22332222 33344444 567778887775554
No 256
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=65.64 E-value=74 Score=30.85 Aligned_cols=132 Identities=11% Similarity=0.041 Sum_probs=79.5
Q ss_pred CcHHHHHHHHhcC-------CChHHHHHHHHHHHHhhC---CchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 025930 71 GGIGLLSTTAANA-------EDPQTLRMVAGAIANLCG---NDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANF 140 (246)
Q Consensus 71 g~i~~L~~ll~~~-------~~~~~~~~a~~aL~~L~~---~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL 140 (246)
|.++.+..++... +++.-.+.|++.++++.+ -+.-..-+++.=+++.++..++++---++.+||..+.-+
T Consensus 408 giLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~ 487 (970)
T COG5656 408 GILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTI 487 (970)
T ss_pred hHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHH
Confidence 5677777777321 123334455555555542 122223345555677777788888777888999888887
Q ss_pred hcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhccCchhHHHHHh--CCcHHHHHHHH
Q 025930 141 AKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQHEVNAKDMIS--GGALWELVRIS 213 (246)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~~~~~~i~~--~g~i~~L~~ll 213 (246)
+. +.+..-.-..+.+.-..++++++-.++-.|+.||.-+-++.+...++.+ -+.++.|+.+.
T Consensus 488 ee-----------Dfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLS 551 (970)
T COG5656 488 EE-----------DFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLS 551 (970)
T ss_pred HH-----------hcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhc
Confidence 63 3333322233455556677778888999999999888776655455543 23444444443
No 257
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.91 E-value=1.4e+02 Score=29.13 Aligned_cols=32 Identities=25% Similarity=0.188 Sum_probs=18.7
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcc
Q 025930 31 LTSLLMLLGSSEDETIHRVAAGAIANLAMNET 62 (246)
Q Consensus 31 i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~ 62 (246)
-..|..+|++..|....+..=++++-++.+.+
T Consensus 37 ~~dL~~lLdSnkd~~KleAmKRIia~iA~G~d 68 (968)
T KOG1060|consen 37 HDDLKQLLDSNKDSLKLEAMKRIIALIAKGKD 68 (968)
T ss_pred hHHHHHHHhccccHHHHHHHHHHHHHHhcCCc
Confidence 35677788876555444444445555576654
No 258
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=64.79 E-value=1.6e+02 Score=29.71 Aligned_cols=199 Identities=18% Similarity=0.112 Sum_probs=97.7
Q ss_pred HHHHHH-hCCHHHHHHHhcCC----CCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHH
Q 025930 22 QEKIVE-AGGLTSLLMLLGSS----EDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAI 96 (246)
Q Consensus 22 ~~~i~~-~g~i~~Li~ll~~~----~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL 96 (246)
+..|.+ .|...++++-+-.. =|+.+++.++.+|.+|+.-+ ......+..+.++....+ .|...+.....+.
T Consensus 531 ~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~---pk~~a~~~L~~lld~~ls-~~~~~r~g~~la~ 606 (1133)
T KOG1943|consen 531 CVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTE---PKYLADYVLPPLLDSTLS-KDASMRHGVFLAA 606 (1133)
T ss_pred hHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhh---HHhhcccchhhhhhhhcC-CChHHhhhhHHHH
Confidence 344444 34556665554332 17888999999999987652 112223456666655554 3566655555555
Q ss_pred HHhhC--------CchhH-HHHHhc-CCHHHHHH-HhcCCCHHH-HHHHHHHHHHhhcccccccccCChhhhHHHHhCCC
Q 025930 97 ANLCG--------NDKLQ-LKLRGE-GGIKALLG-MVRCGHPDV-LAQVARGIANFAKCESRASTQGTKTGRSLLIDDGA 164 (246)
Q Consensus 97 ~~L~~--------~~~~~-~~l~~~-g~i~~L~~-ll~~~~~~~-~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~ 164 (246)
..+.. ..... .++..- ..++++.+ -+..+..++ +...+..+.+++-. .+.........+.
T Consensus 607 ~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s--------~~~~~~~~v~e~~ 678 (1133)
T KOG1943|consen 607 GEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLS--------KDRLFQDFVIENW 678 (1133)
T ss_pred HHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhc--------cchhHHHHHHHHH
Confidence 55441 11111 111110 12333333 333332233 44455666666632 2333333333444
Q ss_pred hHHHHHcccCCChhHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccCh
Q 025930 165 LPWIVQNSNNEASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSSP 233 (246)
Q Consensus 165 i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~ 233 (246)
-..+.+.+..++ .+|..+.+++..+++.--..........+...+.-+.+++++..+.--.-++..+|
T Consensus 679 ~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~~~~~~r~g~~lal~~lp 746 (1133)
T KOG1943|consen 679 QMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKCSEERIRRGLILALGVLP 746 (1133)
T ss_pred HHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCchHHHHHHHHHHHHccCc
Confidence 445555553344 78888999999887621111111111233344444444555555555555555565
No 259
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=64.66 E-value=84 Score=26.30 Aligned_cols=140 Identities=14% Similarity=0.055 Sum_probs=81.1
Q ss_pred HHHHHHhCCHHHHHHHhcCCC----CHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCC---hHHHHHHHH
Q 025930 22 QEKIVEAGGLTSLLMLLGSSE----DETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAED---PQTLRMVAG 94 (246)
Q Consensus 22 ~~~i~~~g~i~~Li~ll~~~~----~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~---~~~~~~a~~ 94 (246)
|-.+.=-+.+|.++..+..++ ++. ...++..|+.++... ..+.+..++..+.++.- .+-...++.
T Consensus 104 rll~~~la~LP~ll~~~d~~~~i~~~~~-~~~~A~~La~~a~~~-------~~~~La~il~~ya~~~fr~~~dfl~~v~~ 175 (262)
T PF14225_consen 104 RLLFLLLALLPRLLHAFDDPNPIQPDQE-CIEIAEALAQVAEAQ-------GLPNLARILSSYAKGRFRDKDDFLSQVVS 175 (262)
T ss_pred cHHHHHHHHHHHHHHHhcccccccccHH-HHHHHHHHHHHHHhC-------CCccHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 444444556888888888864 133 345688888888442 12234444443333221 223334444
Q ss_pred HHHHhhCCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccC
Q 025930 95 AIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNN 174 (246)
Q Consensus 95 aL~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~ 174 (246)
.|+.-. .|+.-- ..+.-|+.++.++.+.++......|..+-.+- +.+.. ...+.+.++.++++.
T Consensus 176 ~l~~~f-~P~~~~-----~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~---------d~~~~-~~~dlispllrlL~t 239 (262)
T PF14225_consen 176 YLREAF-FPDHEF-----QILTFLLGLLENGPPWLRRKTLQILKVLLPHV---------DMRSP-HGADLISPLLRLLQT 239 (262)
T ss_pred HHHHHh-CchhHH-----HHHHHHHHHHhCCcHHHHHHHHHHHHHHhccc---------cCCCC-cchHHHHHHHHHhCC
Confidence 444321 232222 23566888898888999999999999887431 22222 445578999999976
Q ss_pred CChhHHHHHHHHHH
Q 025930 175 EASPIRRHIELALC 188 (246)
Q Consensus 175 ~~~~v~~~a~~aL~ 188 (246)
+.- ..|+.+|-
T Consensus 240 ~~~---~eAL~VLd 250 (262)
T PF14225_consen 240 DLW---MEALEVLD 250 (262)
T ss_pred ccH---HHHHHHHH
Confidence 543 44554443
No 260
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=63.84 E-value=52 Score=28.46 Aligned_cols=62 Identities=21% Similarity=0.200 Sum_probs=46.4
Q ss_pred ChhhhHHHHhCC--ChHHHHHcccCC---ChhHHHHHHHHHHHhccCchhHHHHH-------hCCcHHHHHHHH
Q 025930 152 TKTGRSLLIDDG--ALPWIVQNSNNE---ASPIRRHIELALCHLAQHEVNAKDMI-------SGGALWELVRIS 213 (246)
Q Consensus 152 ~~~~~~~l~~~g--~i~~Lv~ll~~~---~~~v~~~a~~aL~~La~~~~~~~~i~-------~~g~i~~L~~ll 213 (246)
.......+...+ .+..|+++++.+ ...+|..|+.+|..++.+......+. ..|.+..+++-+
T Consensus 252 ~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HGiL~~llR~~ 325 (329)
T PF06012_consen 252 ESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHGILPQLLRKC 325 (329)
T ss_pred CHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCcccHHHHHHHH
Confidence 457777777777 899999999887 46899999999999988554444443 467777776654
No 261
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.77 E-value=98 Score=28.40 Aligned_cols=110 Identities=9% Similarity=0.038 Sum_probs=64.1
Q ss_pred CChHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhc-CCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhC
Q 025930 84 EDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVR-CGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDD 162 (246)
Q Consensus 84 ~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~ 162 (246)
++..++..|+..|.|.++.-.-+.+-...-.+..++.-|. ..+.++.-.++.+|....... .+.+...-+.
T Consensus 270 p~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~------~~~~l~~~~l-- 341 (533)
T KOG2032|consen 270 PSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKA------SNDDLESYLL-- 341 (533)
T ss_pred chhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh------hhcchhhhch--
Confidence 4567788999999999865222222112223444555444 446788888888877766210 1111111111
Q ss_pred CChHHHHHcccCCChhHHHHHHHHHHHhcc--CchhHHHHH
Q 025930 163 GALPWIVQNSNNEASPIRRHIELALCHLAQ--HEVNAKDMI 201 (246)
Q Consensus 163 g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~--~~~~~~~i~ 201 (246)
.+.-.+..+..+.+++.|..+-..+..|+- ....++.+.
T Consensus 342 ~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Ft 382 (533)
T KOG2032|consen 342 NIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFT 382 (533)
T ss_pred hHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhH
Confidence 123355667788899999999988888865 333444444
No 262
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.19 E-value=37 Score=29.12 Aligned_cols=103 Identities=15% Similarity=0.123 Sum_probs=66.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhccCc
Q 025930 115 IKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQHE 194 (246)
Q Consensus 115 i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~ 194 (246)
+...++.|.+++.+.+..++..++.|+.+ .++....+. ..++..+++-+++....|.+.|+.++..+.++-
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~f--------h~e~l~~~L-~~vii~vvkslKNlRS~VsraA~~t~~difs~l 160 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEF--------HPESLNPML-HEVIIAVVKSLKNLRSAVSRAACMTLADIFSSL 160 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhh--------hHHHHHHHH-HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 45567778888888888888888888842 123333333 236778888899889999999999999996633
Q ss_pred hhHHHHHhCCcHHHHHHHH-h--cCCHHHHHHHHHHHHc
Q 025930 195 VNAKDMISGGALWELVRIS-R--DCSREDIRTLAHRTLT 230 (246)
Q Consensus 195 ~~~~~i~~~g~i~~L~~ll-~--~~~~~~~~~~A~~~L~ 230 (246)
.+ .+.+ ....++..+ . +.++.-+++.|.++|.
T Consensus 161 n~--~i~~--~ld~lv~~Ll~ka~~dnrFvreda~kAL~ 195 (334)
T KOG2933|consen 161 NN--SIDQ--ELDDLVTQLLHKASQDNRFVREDAEKALV 195 (334)
T ss_pred HH--HHHH--HHHHHHHHHHhhhcccchHHHHHHHHHHH
Confidence 32 1111 223333222 2 1345566777777664
No 263
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=61.93 E-value=84 Score=30.95 Aligned_cols=181 Identities=13% Similarity=0.035 Sum_probs=97.6
Q ss_pred cHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-------cchHHHHHhcCcHHHHHHHHhcC-CChHHHHHH
Q 025930 21 NQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN-------ETNQELIMTQGGIGLLSTTAANA-EDPQTLRMV 92 (246)
Q Consensus 21 ~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-------~~~~~~i~~~g~i~~L~~ll~~~-~~~~~~~~a 92 (246)
-.+++-+...+++++.++..+.++.++..|...|..++.. +...+.++..+.+..|+..+-.. .........
T Consensus 182 Viq~l~d~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~e~ieqLl~~ml~~~~s~s~lVs~ 261 (838)
T KOG2073|consen 182 VIQWLNDQELIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESPETIEQLLKIMLEDGTSLSVLVSG 261 (838)
T ss_pred HHHHHhhHHHHHHHHHHhCCccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcCHHHHHHHHHHHccCCcchhhHHHH
Confidence 3467778899999999999887888888888888877544 33567777777888777554432 212222223
Q ss_pred HHHHHHhhCCchhHHHHHhcC-CHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCCh---HHH
Q 025930 93 AGAIANLCGNDKLQLKLRGEG-GIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGAL---PWI 168 (246)
Q Consensus 93 ~~aL~~L~~~~~~~~~l~~~g-~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i---~~L 168 (246)
...+..+.....- .++.. ....+..-....++.+....+.++..-- .++.+.+.+-... +.=
T Consensus 262 i~vlI~ll~~~r~---~~~~~~~~~i~~q~~~~~d~~~~~~~l~~~~p~L-----------~dF~~lL~~~~~~~~l~tt 327 (838)
T KOG2073|consen 262 IIVLISLLNPRRD---TVETNSTTTILSQPPSERDPIVLNELLGAMEPRL-----------GDFVQLLLEPEKLDLLETT 327 (838)
T ss_pred HHHHHHhcCcccc---cccccceeeeecCCccccCccchHHHHHHHHHHH-----------HHHHHHhcCCccchhhhhh
Confidence 3333322211100 00000 0011111112234555566666555422 1444444432222 222
Q ss_pred HHcccCCChhHHHHHHHHHHHhc--cCchhHHHHHhCCcHHHHHHHHhc
Q 025930 169 VQNSNNEASPIRRHIELALCHLA--QHEVNAKDMISGGALWELVRISRD 215 (246)
Q Consensus 169 v~ll~~~~~~v~~~a~~aL~~La--~~~~~~~~i~~~g~i~~L~~ll~~ 215 (246)
...+.++-...|...+..+..|- .+...-......|.+..++.+.+.
T Consensus 328 ~g~l~pPLG~~Rlki~eliaelL~~~~~~l~~el~~~~~~~r~lD~f~~ 376 (838)
T KOG2073|consen 328 YGELEPPLGFERLKIVELIAELLHCSNMTLLNELRAEGIAERLLDLFFE 376 (838)
T ss_pred hhccCCCcchHHHHHHHHHHHHhccCcHHHHhHHhhhhhHHHHHHHHHh
Confidence 33444455667777777777773 355555666666777666666653
No 264
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=61.18 E-value=17 Score=25.97 Aligned_cols=40 Identities=13% Similarity=0.086 Sum_probs=33.7
Q ss_pred HHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHH
Q 025930 48 RVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQT 88 (246)
Q Consensus 48 ~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~ 88 (246)
...+..+..|+..|+.-..+++.|+++.|+.+|.+ +|..+
T Consensus 64 d~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~H-eN~DI 103 (108)
T PF08216_consen 64 DEEIKKLSVLATAPELYPELVELGAVPSLLGLLSH-ENTDI 103 (108)
T ss_pred HHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCC-CCcce
Confidence 44678889999999999999999999999999987 45444
No 265
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=60.55 E-value=36 Score=31.16 Aligned_cols=81 Identities=16% Similarity=0.156 Sum_probs=48.2
Q ss_pred ccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHh---cCC-----------cchHHHHHhcCcHHHHHHHHhcCCC
Q 025930 20 SNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANL---AMN-----------ETNQELIMTQGGIGLLSTTAANAED 85 (246)
Q Consensus 20 ~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~l---a~~-----------~~~~~~i~~~g~i~~L~~ll~~~~~ 85 (246)
+-.+++.+++.|+.|+.+|+...++..+..|+..|..+ +.+ +..-+.++....+..|+..+-....
T Consensus 53 ~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~ 132 (475)
T PF04499_consen 53 GILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQG 132 (475)
T ss_pred HHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCC
Confidence 44567778999999999998766788888888776655 332 1122444445555555544332111
Q ss_pred hHHHHHHHHHHHHhh
Q 025930 86 PQTLRMVAGAIANLC 100 (246)
Q Consensus 86 ~~~~~~a~~aL~~L~ 100 (246)
.....++++++..|.
T Consensus 133 ~s~lvn~v~IlieLI 147 (475)
T PF04499_consen 133 GSSLVNGVSILIELI 147 (475)
T ss_pred cchHHHHHHHHHHHH
Confidence 223335555555544
No 266
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.52 E-value=93 Score=32.63 Aligned_cols=148 Identities=12% Similarity=0.006 Sum_probs=80.3
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHH-HHh--cCCChHHHHHHHHHHHHhh-CCchhH
Q 025930 31 LTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLST-TAA--NAEDPQTLRMVAGAIANLC-GNDKLQ 106 (246)
Q Consensus 31 i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~-ll~--~~~~~~~~~~a~~aL~~L~-~~~~~~ 106 (246)
|-+++++.++..-..-++.|+.-++.++.....+.. ...+.|+. +.+ -.+|..++ .|..-++|-- .++...
T Consensus 958 VYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~----p~l~kLIPrLyRY~yDP~~~Vq-~aM~sIW~~Li~D~k~~ 1032 (1702)
T KOG0915|consen 958 VYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLE----PYLKKLIPRLYRYQYDPDKKVQ-DAMTSIWNALITDSKKV 1032 (1702)
T ss_pred HHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhh----hHHHHhhHHHhhhccCCcHHHH-HHHHHHHHHhccChHHH
Confidence 455555555533333344455555555544211111 12233332 222 12456666 6777777754 554333
Q ss_pred HHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHH--
Q 025930 107 LKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIE-- 184 (246)
Q Consensus 107 ~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~-- 184 (246)
.--.-..+.+-|+.-+.+....+++.+|-+|..|-.. +..++..+.+- ..-..+.+-+.+-.+.+|+.|-
T Consensus 1033 vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g------~~~~~~~e~lp--elw~~~fRvmDDIKEsVR~aa~~~ 1104 (1702)
T KOG0915|consen 1033 VDEYLNEILDELLVNLTSKEWRVREASCLALADLLQG------RPFDQVKEKLP--ELWEAAFRVMDDIKESVREAADKA 1104 (1702)
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcC------CChHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222234677788888888899999999999998743 13344444443 2344455555555677888764
Q ss_pred -HHHHHhc
Q 025930 185 -LALCHLA 191 (246)
Q Consensus 185 -~aL~~La 191 (246)
.+|..||
T Consensus 1105 ~~~lsKl~ 1112 (1702)
T KOG0915|consen 1105 ARALSKLC 1112 (1702)
T ss_pred HHHHHHHH
Confidence 4555553
No 267
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=59.25 E-value=1.3e+02 Score=27.64 Aligned_cols=109 Identities=15% Similarity=0.093 Sum_probs=68.5
Q ss_pred hCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCc----chHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh---
Q 025930 28 AGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNE----TNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC--- 100 (246)
Q Consensus 28 ~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~----~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~--- 100 (246)
.+.++.+++.++.+ .+...-.+.+. +..+ ...+.+.+.+.|+.|+.++....+..++.+|+..|+.+.
T Consensus 20 ~~~v~~llkHI~~~---~ImDlLLklIs--~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is 94 (475)
T PF04499_consen 20 PNFVDNLLKHIDTP---AIMDLLLKLIS--TDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRIS 94 (475)
T ss_pred ccHHHHHHHhcCCc---HHHHHHHHHHc--cCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 57788888888653 33333222222 2222 334566678999999999986567888889988877775
Q ss_pred CC-----------chhHHHHHhcCCHHHHHHHhcC-CCHHHHHHHHHHHHHhh
Q 025930 101 GN-----------DKLQLKLRGEGGIKALLGMVRC-GHPDVLAQVARGIANFA 141 (246)
Q Consensus 101 ~~-----------~~~~~~l~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~nL~ 141 (246)
.+ .+....+.....|..|++.+-. .......++++++-.|-
T Consensus 95 ~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLI 147 (475)
T PF04499_consen 95 RNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELI 147 (475)
T ss_pred hccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence 21 2334556666677777776652 33455666666665554
No 268
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=59.16 E-value=1.1e+02 Score=25.78 Aligned_cols=70 Identities=14% Similarity=0.166 Sum_probs=48.1
Q ss_pred CHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchH--HHHHhcCcHHHHHHH----Hh-------cCCChHHHHHHHHHH
Q 025930 30 GLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQ--ELIMTQGGIGLLSTT----AA-------NAEDPQTLRMVAGAI 96 (246)
Q Consensus 30 ~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~--~~i~~~g~i~~L~~l----l~-------~~~~~~~~~~a~~aL 96 (246)
.+|+++.++++. ++.++..++.+|..+..+-... ..+...|-.+++-.. +. ..+...+...+.-+|
T Consensus 120 iiP~iL~llDD~-~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 120 IIPPILNLLDDY-SPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHhhHHHHhcCC-CHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 489999999986 8888999999999998763222 235566666644433 33 112345677788888
Q ss_pred HHhh
Q 025930 97 ANLC 100 (246)
Q Consensus 97 ~~L~ 100 (246)
..|+
T Consensus 199 ~~L~ 202 (282)
T PF10521_consen 199 LSLL 202 (282)
T ss_pred HHHH
Confidence 8875
No 269
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=58.85 E-value=1.1e+02 Score=25.54 Aligned_cols=73 Identities=16% Similarity=0.236 Sum_probs=50.2
Q ss_pred HhcCCHHHHHHHhcCCCHH--------HHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCC--ChhH
Q 025930 110 RGEGGIKALLGMVRCGHPD--------VLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNE--ASPI 179 (246)
Q Consensus 110 ~~~g~i~~L~~ll~~~~~~--------~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~--~~~v 179 (246)
.+..+.++++++++.++.. +-+...+++..++ .|-++.|.+++.++ +.=+
T Consensus 70 re~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~--------------------~G~~~~L~~li~~~~~~~yv 129 (249)
T PF06685_consen 70 REERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVG--------------------DGDIEPLKELIEDPDADEYV 129 (249)
T ss_pred hhhhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHh--------------------CCCHHHHHHHHhCCcHHHHH
Confidence 3445789999999755332 1122223333444 57788888888777 5668
Q ss_pred HHHHHHHHHHhcc-CchhHHHHHh
Q 025930 180 RRHIELALCHLAQ-HEVNAKDMIS 202 (246)
Q Consensus 180 ~~~a~~aL~~La~-~~~~~~~i~~ 202 (246)
|..|..+|..++. ++..|+.+++
T Consensus 130 R~aa~~aL~~l~~~~~~~Re~vi~ 153 (249)
T PF06685_consen 130 RMAAISALAFLVHEGPISREEVIQ 153 (249)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHH
Confidence 9999999999977 6667887775
No 270
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=58.40 E-value=40 Score=25.08 Aligned_cols=70 Identities=9% Similarity=0.056 Sum_probs=52.0
Q ss_pred CHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC--cchHHHHHhcCcHHHHHHHHhcCCChH---HHHHHHHHHHHhh
Q 025930 30 GLTSLLMLLGSSEDETIHRVAAGAIANLAMN--ETNQELIMTQGGIGLLSTTAANAEDPQ---TLRMVAGAIANLC 100 (246)
Q Consensus 30 ~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~--~~~~~~i~~~g~i~~L~~ll~~~~~~~---~~~~a~~aL~~L~ 100 (246)
++..|-..|+++ +|.++..|+..|-.|..+ +..+..+.....+..|..++.+..... +++.+...+...+
T Consensus 43 a~~~l~krl~~~-~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 43 AARALRKRLKHG-NPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWA 117 (140)
T ss_dssp HHHHHHHHHTTS-SHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHH
Confidence 477788888885 888899899988888877 456667766677888888777544443 7777777776655
No 271
>PF09124 Endonuc-dimeris: T4 recombination endonuclease VII, dimerisation; InterPro: IPR015208 This entry represents a dimerisation domain predominantly found in Bacteriophage T4 recombination endonuclease VII. It adopts a helical secondary structure, with three alpha helices oriented parallel to each other. As well as mediating dimerisation of the protein, this domain is also involved in binding to the DNA major groove []. ; PDB: 1EN7_B 1E7L_B 2QNF_A 2QNC_A 1E7D_A.
Probab=56.86 E-value=7.4 Score=24.01 Aligned_cols=16 Identities=31% Similarity=0.609 Sum_probs=11.3
Q ss_pred cChhHHHHHHHhhhcC
Q 025930 231 SSPAFQAEMRRLRIDY 246 (246)
Q Consensus 231 ~~~~~~~e~~~~~~~~ 246 (246)
+.+++++|+...||.|
T Consensus 17 ~k~eMiaem~~~G~~y 32 (54)
T PF09124_consen 17 TKPEMIAEMDSYGFEY 32 (54)
T ss_dssp -HHHHHHHHHHTT---
T ss_pred CHHHHHHHHHHhCCcC
Confidence 5689999999999998
No 272
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=56.42 E-value=57 Score=24.47 Aligned_cols=28 Identities=7% Similarity=0.023 Sum_probs=21.5
Q ss_pred CCChHHHHHcccCCChhHHHHHHHHHHH
Q 025930 162 DGALPWIVQNSNNEASPIRRHIELALCH 189 (246)
Q Consensus 162 ~g~i~~Lv~ll~~~~~~v~~~a~~aL~~ 189 (246)
...-..+..+|.++++++|+.|+.||..
T Consensus 16 ~~l~~~~~~LL~~~d~~vQklAL~cll~ 43 (141)
T PF07539_consen 16 DELYDALLRLLSSRDPEVQKLALDCLLT 43 (141)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3445567788888889999998888874
No 273
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=55.85 E-value=11 Score=19.39 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHh
Q 025930 46 IHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAA 81 (246)
Q Consensus 46 ~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~ 81 (246)
++..|+.+|+++.... .++.|++.++
T Consensus 1 VR~~Aa~aLg~igd~~----------ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGDPR----------AIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-SHH----------HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHH----------HHHHHHHHhc
Confidence 4667888888887633 5666665553
No 274
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=55.46 E-value=36 Score=24.94 Aligned_cols=67 Identities=12% Similarity=0.239 Sum_probs=45.7
Q ss_pred ChHHHHHcccCCChhHHHHHHHHHHHhcc--CchhHHHHHh-CCcHHHHHHHHh-------cCCHHHHHHHHHHHHc
Q 025930 164 ALPWIVQNSNNEASPIRRHIELALCHLAQ--HEVNAKDMIS-GGALWELVRISR-------DCSREDIRTLAHRTLT 230 (246)
Q Consensus 164 ~i~~Lv~ll~~~~~~v~~~a~~aL~~La~--~~~~~~~i~~-~g~i~~L~~ll~-------~~~~~~~~~~A~~~L~ 230 (246)
+...|..-|++.++.|+..++.+|.+||. ++..+..+.+ ...+..+.++-- +.....+|..|.+++.
T Consensus 39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~ 115 (122)
T cd03572 39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIK 115 (122)
T ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHH
Confidence 56677778888899999999999999987 4344444443 445555555543 1235677888887764
No 275
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.30 E-value=1.4e+02 Score=25.79 Aligned_cols=93 Identities=12% Similarity=-0.008 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHhhCC-chhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCCh
Q 025930 87 QTLRMVAGAIANLCGN-DKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGAL 165 (246)
Q Consensus 87 ~~~~~a~~aL~~L~~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i 165 (246)
+....++..|..|+.. ++.-..... .++-.+++-+++..+.+.+.|+.++.-+..+ ....+.+ ..-
T Consensus 103 ~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlRS~VsraA~~t~~difs~-----------ln~~i~~-~ld 169 (334)
T KOG2933|consen 103 EDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLRSAVSRAACMTLADIFSS-----------LNNSIDQ-ELD 169 (334)
T ss_pred HHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHH-----------HHHHHHH-HHH
Confidence 3444666777777632 233222222 2466678888888999999999999887642 1222222 122
Q ss_pred HHHHHcccCC---ChhHHHHHHHHHHHhcc
Q 025930 166 PWIVQNSNNE---ASPIRRHIELALCHLAQ 192 (246)
Q Consensus 166 ~~Lv~ll~~~---~~~v~~~a~~aL~~La~ 192 (246)
..+..|++.. +.-+|+.|..+|..|..
T Consensus 170 ~lv~~Ll~ka~~dnrFvreda~kAL~aMV~ 199 (334)
T KOG2933|consen 170 DLVTQLLHKASQDNRFVREDAEKALVAMVN 199 (334)
T ss_pred HHHHHHHhhhcccchHHHHHHHHHHHHHHh
Confidence 2334445443 55689999999988865
No 276
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=55.11 E-value=1.4e+02 Score=25.81 Aligned_cols=187 Identities=12% Similarity=0.058 Sum_probs=122.7
Q ss_pred HHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhc--CcHHHHHHHHhcCCC-hHHHHHHHHHHHH
Q 025930 23 EKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQ--GGIGLLSTTAANAED-PQTLRMVAGAIAN 98 (246)
Q Consensus 23 ~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~--g~i~~L~~ll~~~~~-~~~~~~a~~aL~~ 98 (246)
+.+-.+|.++.||..+... +-..++.+..+..++-.- -..|..-++. --.+.+..+++...+ +++--.+-..+..
T Consensus 73 qef~~~~~l~~lI~~l~~l-~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~~~~iaL~cg~mlrE 151 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHLPKL-EFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYENTPEIALTCGNMLRE 151 (342)
T ss_pred HHHHhCCchHHHHHhhhcc-cchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhccchHHHHHHHHHHHH
Confidence 5677789999999999876 444566667777776432 2333333321 123455555555443 5555444455555
Q ss_pred hhCCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCC----hHHHHHcccC
Q 025930 99 LCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGA----LPWIVQNSNN 174 (246)
Q Consensus 99 L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~----i~~Lv~ll~~ 174 (246)
....+...+.+............+..+.-++..-|..++..+.. ........+...+. .+.--.++.+
T Consensus 152 cirhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt--------~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s 223 (342)
T KOG1566|consen 152 CIRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLT--------RHKSVVAEFLIRNYDNFFAEVYEKLLRS 223 (342)
T ss_pred HHhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHH--------HhHHHHHHHHHhChhhhHHHHHHHHhcc
Confidence 55777777888888888888999988888988888888887653 11233333333332 3335668888
Q ss_pred CChhHHHHHHHHHHHhccCchhHHHHHh----CCcHHHHHHHHhcCCH
Q 025930 175 EASPIRRHIELALCHLAQHEVNAKDMIS----GGALWELVRISRDCSR 218 (246)
Q Consensus 175 ~~~~v~~~a~~aL~~La~~~~~~~~i~~----~g~i~~L~~ll~~~~~ 218 (246)
++=-++..+...|+.+-.+..+...|.+ ...+..+..++++.+.
T Consensus 224 ~Nyvtkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdksk 271 (342)
T KOG1566|consen 224 ENYVTKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSK 271 (342)
T ss_pred cceehHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccc
Confidence 8888999999999999776666555543 3567777888886543
No 277
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=54.67 E-value=1.3e+02 Score=25.30 Aligned_cols=118 Identities=12% Similarity=0.057 Sum_probs=65.3
Q ss_pred cHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhH--HHHHhcCCHHHHHHHhc------------CCCHHHHHHHHHHH
Q 025930 72 GIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQ--LKLRGEGGIKALLGMVR------------CGHPDVLAQVARGI 137 (246)
Q Consensus 72 ~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~--~~l~~~g~i~~L~~ll~------------~~~~~~~~~a~~~L 137 (246)
.+|.++.++.+. ++..+..++.+|..+..+.... ..+.+.|..+++-+.+. .++..+...+.-++
T Consensus 120 iiP~iL~llDD~-~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 120 IIPPILNLLDDY-SPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHhhHHHHhcCC-CHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 377888888884 7889999999999998543322 34567776665555442 23455777888888
Q ss_pred HHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHh
Q 025930 138 ANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHL 190 (246)
Q Consensus 138 ~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~L 190 (246)
..|........-.........++.+|.+..+.......+++++...+..+..+
T Consensus 199 ~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~ 251 (282)
T PF10521_consen 199 LSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPI 251 (282)
T ss_pred HHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHH
Confidence 87753100000001122233333334433333332223466666666555544
No 278
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=54.65 E-value=18 Score=18.79 Aligned_cols=27 Identities=22% Similarity=0.194 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHh
Q 025930 45 TIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAA 81 (246)
Q Consensus 45 ~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~ 81 (246)
.++..|+.+|+++...+ +++.|...++
T Consensus 2 ~vR~~aa~aLg~~~~~~----------a~~~L~~~l~ 28 (30)
T smart00567 2 LVRHEAAFALGQLGDEE----------AVPALIKALE 28 (30)
T ss_pred HHHHHHHHHHHHcCCHh----------HHHHHHHHhc
Confidence 35778899999985443 4555555554
No 279
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=54.23 E-value=62 Score=25.72 Aligned_cols=99 Identities=12% Similarity=0.163 Sum_probs=43.9
Q ss_pred HHHHHhcCCHHHHHHHhcC---CC---------------HHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHH
Q 025930 106 QLKLRGEGGIKALLGMVRC---GH---------------PDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPW 167 (246)
Q Consensus 106 ~~~l~~~g~i~~L~~ll~~---~~---------------~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~ 167 (246)
+..+.+.|+...++++++. .. .++...+...|+.+|. ++++++..+.+. ++.
T Consensus 36 Q~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~--------~n~~NQ~~l~~~--~~~ 105 (207)
T PF01365_consen 36 QKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCR--------GNRENQKYLFKH--LDF 105 (207)
T ss_dssp HHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHT--------T-HHHHHHHHHH--HH-
T ss_pred HHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHH--------hCHHHHHHHHHH--HhH
Confidence 4445678888888888862 11 3567788899999994 677888877754 554
Q ss_pred HHHcccCCChhHHHHHHHHHHHhcc-CchhHHHHHhCCcHHHHHHHHhc
Q 025930 168 IVQNSNNEASPIRRHIELALCHLAQ-HEVNAKDMISGGALWELVRISRD 215 (246)
Q Consensus 168 Lv~ll~~~~~~v~~~a~~aL~~La~-~~~~~~~i~~~g~i~~L~~ll~~ 215 (246)
+...+.......-..+..+|..+-. |++....+.+.. +..++.++..
T Consensus 106 l~~~~~~~~~~~~~~~~d~l~~i~~dN~~L~~~i~e~~-I~~~i~ll~~ 153 (207)
T PF01365_consen 106 LISIFMQLQIGYGLGALDVLTEIFRDNPELCESISEEH-IEKFIELLRK 153 (207)
T ss_dssp ----HHCCCH-TTHHHHHHHHHHHTT-----------------------
T ss_pred HHHHHHHhhccCCchHHHHHHHHHHCcHHHHHHhhHHH-HHHHHHHHHH
Confidence 4333332211111344556666644 444445544443 7777777764
No 280
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.52 E-value=1.9e+02 Score=28.21 Aligned_cols=67 Identities=16% Similarity=0.121 Sum_probs=41.2
Q ss_pred ChHHHHHcccCCChhHHHHHHHHHHHhcc-CchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccChhHH
Q 025930 164 ALPWIVQNSNNEASPIRRHIELALCHLAQ-HEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSSPAFQ 236 (246)
Q Consensus 164 ~i~~Lv~ll~~~~~~v~~~a~~aL~~La~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~~~~ 236 (246)
.+..+.....-.+..+|..|+.+|..... ++..+ . .++.++.-+..+.++++|..|.-.|.+..+-+
T Consensus 467 yir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l~-----~-sI~vllkRc~~D~DdevRdrAtf~l~~l~~~~ 534 (865)
T KOG1078|consen 467 YIRFIYNRVILENAIVRAAAVSALAKFGAQDVVLL-----P-SILVLLKRCLNDSDDEVRDRATFYLKNLEEKD 534 (865)
T ss_pred hhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCcc-----c-cHHHHHHHHhcCchHHHHHHHHHHHHHhhhhh
Confidence 34455555555688899999999998874 22222 1 23344333334677778888887776554333
No 281
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=53.11 E-value=2.3e+02 Score=29.92 Aligned_cols=139 Identities=10% Similarity=0.078 Sum_probs=83.1
Q ss_pred CCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchH-HHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh-CCchh
Q 025930 29 GGLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQ-ELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC-GNDKL 105 (246)
Q Consensus 29 g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~-~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~-~~~~~ 105 (246)
+++..++..++.+ .+.++..|.++|.++..- +... ..-++.+... -+.+ ....+++.|+..+.... .+++.
T Consensus 816 ~yLk~Il~~l~e~-~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~----R~~D-ssasVREAaldLvGrfvl~~~e~ 889 (1692)
T KOG1020|consen 816 PYLKLILSVLGEN-AIALRTKALKCLSMIVEADPSVLSRPDVQEAVHG----RLND-SSASVREAALDLVGRFVLSIPEL 889 (1692)
T ss_pred HHHHHHHHHhcCc-hHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHH----hhcc-chhHHHHHHHHHHhhhhhccHHH
Confidence 5578888888864 788888899999999654 3221 1222222222 2222 35678888888887665 55555
Q ss_pred HHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcc---cCCChhHHHH
Q 025930 106 QLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNS---NNEASPIRRH 182 (246)
Q Consensus 106 ~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll---~~~~~~v~~~ 182 (246)
..+..+ .+..-+..+...+++.++..++-+|.. .++.-. .+...+.++ .++...+++.
T Consensus 890 ~~qyY~-----~i~erIlDtgvsVRKRvIKIlrdic~e--------~pdf~~------i~~~cakmlrRv~DEEg~I~kL 950 (1692)
T KOG1020|consen 890 IFQYYD-----QIIERILDTGVSVRKRVIKILRDICEE--------TPDFSK------IVDMCAKMLRRVNDEEGNIKKL 950 (1692)
T ss_pred HHHHHH-----HHHhhcCCCchhHHHHHHHHHHHHHHh--------CCChhh------HHHHHHHHHHHhccchhHHHHH
Confidence 443322 234444566688999999999999852 122111 122233333 3333347788
Q ss_pred HHHHHHHhcc
Q 025930 183 IELALCHLAQ 192 (246)
Q Consensus 183 a~~aL~~La~ 192 (246)
+..++.++=+
T Consensus 951 v~etf~klWF 960 (1692)
T KOG1020|consen 951 VRETFLKLWF 960 (1692)
T ss_pred HHHHHHHHhc
Confidence 8888877743
No 282
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=52.83 E-value=53 Score=29.16 Aligned_cols=71 Identities=10% Similarity=0.074 Sum_probs=57.6
Q ss_pred CCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC--cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh
Q 025930 29 GGLTSLLMLLGSSEDETIHRVAAGAIANLAMN--ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC 100 (246)
Q Consensus 29 g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~--~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~ 100 (246)
.++..+...|.+. |+.+...|+..+..|..+ ...+..|....+..-|..++.+..++.+.+.....+.+.+
T Consensus 45 d~lk~i~KRln~~-dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWs 117 (462)
T KOG2199|consen 45 DCLKAIMKRLNHK-DPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWS 117 (462)
T ss_pred HHHHHHHHHhcCC-CcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHH
Confidence 4589999999986 899999999999999877 5677788888888888899886567888776666666665
No 283
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=52.47 E-value=24 Score=26.25 Aligned_cols=68 Identities=13% Similarity=0.067 Sum_probs=50.7
Q ss_pred CChHHHHHcccCCChhHHHHHHHHHHHhccCc--hhHHHHHhCCcHHHHHHHHhcCCHHH---HHHHHHHHHc
Q 025930 163 GALPWIVQNSNNEASPIRRHIELALCHLAQHE--VNAKDMISGGALWELVRISRDCSRED---IRTLAHRTLT 230 (246)
Q Consensus 163 g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~--~~~~~i~~~g~i~~L~~ll~~~~~~~---~~~~A~~~L~ 230 (246)
.++..|..-+.++++.++..|+..|-.+..|. .-+..+.....+..|..++....... ++.-+...+.
T Consensus 42 ea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~ 114 (140)
T PF00790_consen 42 EAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQ 114 (140)
T ss_dssp HHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHH
Confidence 35777888888899999999999999987743 44566667778889999887654443 6666665553
No 284
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=52.17 E-value=1.1e+02 Score=29.66 Aligned_cols=107 Identities=13% Similarity=0.080 Sum_probs=65.8
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhc------CcHHHHHHHHhcCCChHHHHHHHHHHHHhhC--C
Q 025930 31 LTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQ------GGIGLLSTTAANAEDPQTLRMVAGAIANLCG--N 102 (246)
Q Consensus 31 i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~------g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~--~ 102 (246)
...++.+|++. .-..+.+-..+.+|+..+-.....++++ ..+..+.+-+.+ ..|-.+-.|+..+..++. .
T Consensus 301 ~~~~~~LLdse-s~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D-~~py~RtKalqv~~kifdl~s 378 (1128)
T COG5098 301 YEHFDELLDSE-SFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSD-TYPYTRTKALQVLEKIFDLNS 378 (1128)
T ss_pred HHHHHHHhccc-chhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHHhCcc
Confidence 56778888875 5666666777888887663333334331 224455555555 467777788888888772 2
Q ss_pred chhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 025930 103 DKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAK 142 (246)
Q Consensus 103 ~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~ 142 (246)
..++++ ..++....+.+...++-++++|+..+.-|-.
T Consensus 379 k~~~~r---~ev~~lv~r~lqDrss~VRrnaikl~SkLL~ 415 (1128)
T COG5098 379 KTVGRR---HEVIRLVGRRLQDRSSVVRRNAIKLCSKLLM 415 (1128)
T ss_pred cccchH---HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Confidence 222211 1235566777777778888888877776543
No 285
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=51.46 E-value=1.1e+02 Score=23.45 Aligned_cols=140 Identities=6% Similarity=0.010 Sum_probs=69.9
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhh-CCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccC
Q 025930 73 IGLLSTTAANAEDPQTLRMVAGAIANLC-GNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQG 151 (246)
Q Consensus 73 i~~L~~ll~~~~~~~~~~~a~~aL~~L~-~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~ 151 (246)
++.|+.+++.+.+..++..+...|..|- -||--.+.+....- .- .-...+..... ..+.+.... +.
T Consensus 12 L~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~--~~--~~~~~~~~~~~---~~l~~~~~~------~~ 78 (160)
T PF11865_consen 12 LDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLD--SK--SSENSNDESTD---ISLPMMGIS------PS 78 (160)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCC--cc--ccccccccchh---hHHhhccCC------Cc
Confidence 5677888887677889999999999885 34432222211101 00 00000001001 111111100 01
Q ss_pred ChhhhHHHHhCCChHHHHHcccCCCh-hHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHc
Q 025930 152 TKTGRSLLIDDGALPWIVQNSNNEAS-PIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLT 230 (246)
Q Consensus 152 ~~~~~~~l~~~g~i~~Lv~ll~~~~~-~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~ 230 (246)
.++.-. ..++..|+..+++..- .-+..+..++.++-.....+..-.=...+|.+++.++.+++ ..++.-..-|+
T Consensus 79 ~ee~y~----~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~-~~~e~~~~qL~ 153 (160)
T PF11865_consen 79 SEEYYP----TVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPD-SLREFYFQQLA 153 (160)
T ss_pred hHHHHH----HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCH-HHHHHHHHHHH
Confidence 122222 3457788888876643 33344567766664322222211223478889999986666 56665554443
No 286
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=51.31 E-value=85 Score=22.20 Aligned_cols=70 Identities=7% Similarity=0.034 Sum_probs=49.9
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcc------cCCChhHHHHHHHHH
Q 025930 114 GIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNS------NNEASPIRRHIELAL 187 (246)
Q Consensus 114 ~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll------~~~~~~v~~~a~~aL 187 (246)
++..+.+-+.++++.++-.++.+|-.+..+ +.+.+...+.....+..++... ...+..+|..+...+
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN-------~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~ 110 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKN-------CGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELV 110 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHH-------ccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHH
Confidence 466677777888999999999999988864 5567777777776666665431 112678888887776
Q ss_pred HHh
Q 025930 188 CHL 190 (246)
Q Consensus 188 ~~L 190 (246)
...
T Consensus 111 ~~w 113 (115)
T cd00197 111 QLW 113 (115)
T ss_pred HHH
Confidence 554
No 287
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=50.81 E-value=84 Score=22.01 Aligned_cols=68 Identities=18% Similarity=0.155 Sum_probs=50.8
Q ss_pred hcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHH
Q 025930 111 GEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELAL 187 (246)
Q Consensus 111 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL 187 (246)
..+.+..|+.-+..++......+...+..+.. .+.+.+.+.+-|+.+.|-++-..-++..+...-..+
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~---------~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLK---------SPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHh---------CcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 33456667777777777788899999999985 468889999999999987777666777666555444
No 288
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=49.82 E-value=1.5e+02 Score=24.63 Aligned_cols=96 Identities=15% Similarity=0.188 Sum_probs=55.5
Q ss_pred HHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHH--HhcCcHHHHHHHHhcCC-ChHHHHHHHHHHHHhh-
Q 025930 25 IVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELI--MTQGGIGLLSTTAANAE-DPQTLRMVAGAIANLC- 100 (246)
Q Consensus 25 i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i--~~~g~i~~L~~ll~~~~-~~~~~~~a~~aL~~L~- 100 (246)
+.+....|+++++++.+++ .+- ..++-.... +....+ +..|-++.|..++.+.. +.-++..|+.||..+.
T Consensus 69 ~re~~A~~~li~l~~~~~~-~~~----~l~GD~~tE-~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~ 142 (249)
T PF06685_consen 69 FREERALPPLIRLFSQDDD-FLE----DLFGDFITE-DLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVH 142 (249)
T ss_pred HhhhhhHHHHHHHHcCCcc-hHH----HHHcchhHh-HHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHH
Confidence 4566789999999987643 211 122221111 122222 23455888888887633 3456878899999988
Q ss_pred CCchhHHHHHhcCCHHHHHHH-hcCCCHH
Q 025930 101 GNDKLQLKLRGEGGIKALLGM-VRCGHPD 128 (246)
Q Consensus 101 ~~~~~~~~l~~~g~i~~L~~l-l~~~~~~ 128 (246)
..+.-+..+++. ++.++.. +...++.
T Consensus 143 ~~~~~Re~vi~~--f~~ll~~~l~~~~~~ 169 (249)
T PF06685_consen 143 EGPISREEVIQY--FRELLNYFLERNPSF 169 (249)
T ss_pred cCCCCHHHHHHH--HHHHHHHHhccCchH
Confidence 556667777664 4445544 4333333
No 289
>PF04064 DUF384: Domain of unknown function (DUF384); InterPro: IPR007206 This is a protein of unknown function. It is found C-terminal to another domain of unknown function (IPR007205 from INTERPRO).
Probab=49.52 E-value=64 Score=20.23 Aligned_cols=47 Identities=15% Similarity=0.151 Sum_probs=33.3
Q ss_pred HHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh
Q 025930 54 IANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC 100 (246)
Q Consensus 54 L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~ 100 (246)
|.-|+.....|+.+.+.|+-+++-.+-...+|+++.+..-....-|-
T Consensus 2 LllL~~T~~GR~~lR~~~vY~IlRe~h~~E~d~~V~e~~erlV~iLi 48 (58)
T PF04064_consen 2 LLLLCATREGREYLREKGVYPILRELHKWEEDEEVQEACERLVQILI 48 (58)
T ss_pred HhHHhccHHHHHHHHHcCchHHHHHHHhccCCHHHHHHHHHHHHHHh
Confidence 45566777899999999988888777776678888754444444333
No 290
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=48.78 E-value=1.1e+02 Score=22.83 Aligned_cols=72 Identities=10% Similarity=0.044 Sum_probs=52.9
Q ss_pred CHHHHHHHhc-CCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHH-HHHcccCC---ChhHHHHHHHHHH
Q 025930 114 GIKALLGMVR-CGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPW-IVQNSNNE---ASPIRRHIELALC 188 (246)
Q Consensus 114 ~i~~L~~ll~-~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~-Lv~ll~~~---~~~v~~~a~~aL~ 188 (246)
++..+-+-+. +.++.++..|+.+|-.+..+ ........+...+++.. |+.++.+. +..|+..++..+.
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkN-------CG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~ 111 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKN-------CGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQ 111 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHH-------ccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHH
Confidence 4566666665 45788888888887777653 33677888888889987 99998642 4588888888888
Q ss_pred Hhcc
Q 025930 189 HLAQ 192 (246)
Q Consensus 189 ~La~ 192 (246)
..+.
T Consensus 112 ~W~~ 115 (141)
T cd03565 112 AWAD 115 (141)
T ss_pred HHHH
Confidence 7754
No 291
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=48.34 E-value=1.5e+02 Score=24.16 Aligned_cols=133 Identities=14% Similarity=0.063 Sum_probs=73.7
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhhCCc-hhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCC
Q 025930 74 GLLSTTAANAEDPQTLRMVAGAIANLCGND-KLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGT 152 (246)
Q Consensus 74 ~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~-~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~ 152 (246)
+.|+.-+.+..+++.....+.+|..++.+. .+...+ +..+..+...++.+...-+.+.+..+-... +
T Consensus 3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~v-----~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~-------~ 70 (234)
T PF12530_consen 3 PLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPPV-----LQTLVSLVEQGSLELRYVALRLLTLLWKAN-------D 70 (234)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhHH-----HHHHHHHHcCCchhHHHHHHHHHHHHHHhC-------c
Confidence 445544556678899989999999999665 443333 455666666666666556666666665321 1
Q ss_pred hhhhHHHHhCCChHHHHHc--------ccCC--ChhHHHHHHHHHHHhcc-CchhHHHHHhCCcHHHHHHHHhcCCHHHH
Q 025930 153 KTGRSLLIDDGALPWIVQN--------SNNE--ASPIRRHIELALCHLAQ-HEVNAKDMISGGALWELVRISRDCSREDI 221 (246)
Q Consensus 153 ~~~~~~l~~~g~i~~Lv~l--------l~~~--~~~v~~~a~~aL~~La~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~~ 221 (246)
..+ +.+..++.. ..++ .-+.......++..+|. .++.-. ..++.+..++...+++..
T Consensus 71 r~f-------~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~-----~ll~~ls~~L~~~~~~~~ 138 (234)
T PF12530_consen 71 RHF-------PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHGV-----DLLPLLSGCLNQSCDEVA 138 (234)
T ss_pred hHH-------HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhHH-----HHHHHHHHHHhccccHHH
Confidence 110 223333222 1111 22344444567777776 444211 244556666633556667
Q ss_pred HHHHHHHHc
Q 025930 222 RTLAHRTLT 230 (246)
Q Consensus 222 ~~~A~~~L~ 230 (246)
+..|.+.|.
T Consensus 139 ~alale~l~ 147 (234)
T PF12530_consen 139 QALALEALA 147 (234)
T ss_pred HHHHHHHHH
Confidence 777777775
No 292
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.82 E-value=2.8e+02 Score=27.16 Aligned_cols=59 Identities=15% Similarity=0.124 Sum_probs=40.4
Q ss_pred HHHhcCCChHHHHHHHHHHHHhh-CCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 025930 78 TTAANAEDPQTLRMVAGAIANLC-GNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAK 142 (246)
Q Consensus 78 ~ll~~~~~~~~~~~a~~aL~~L~-~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~ 142 (246)
..+++ .++.+.-.|+.++.++. .++.. +.. .+..|-.+++++.+-++-.|.++|-.+++
T Consensus 252 s~l~~-K~emV~~EaArai~~l~~~~~r~---l~p--avs~Lq~flssp~~~lRfaAvRtLnkvAm 311 (865)
T KOG1078|consen 252 SCLRH-KSEMVIYEAARAIVSLPNTNSRE---LAP--AVSVLQLFLSSPKVALRFAAVRTLNKVAM 311 (865)
T ss_pred HHHhc-hhHHHHHHHHHHHhhccccCHhh---cch--HHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 44454 34556667788887775 22221 111 56777778889999999999999998886
No 293
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=47.39 E-value=1.4e+02 Score=25.80 Aligned_cols=50 Identities=20% Similarity=0.249 Sum_probs=38.1
Q ss_pred HHHHHHhh---CCchhHHHHHhcC--CHHHHHHHhcCC---CHHHHHHHHHHHHHhhc
Q 025930 93 AGAIANLC---GNDKLQLKLRGEG--GIKALLGMVRCG---HPDVLAQVARGIANFAK 142 (246)
Q Consensus 93 ~~aL~~L~---~~~~~~~~l~~~g--~i~~L~~ll~~~---~~~~~~~a~~~L~nL~~ 142 (246)
+.|+.+++ ..+.....+...+ .+.-|+++++.+ ..+++..|+.+|..++.
T Consensus 240 llAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~ 297 (329)
T PF06012_consen 240 LLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISH 297 (329)
T ss_pred HHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHh
Confidence 34555553 5667778888777 899999999853 46688999999999985
No 294
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.94 E-value=31 Score=30.28 Aligned_cols=60 Identities=25% Similarity=0.154 Sum_probs=47.4
Q ss_pred HHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcc--cCCChhHHHHHHHHHHHhcc-CchhHHHH
Q 025930 133 VARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNS--NNEASPIRRHIELALCHLAQ-HEVNAKDM 200 (246)
Q Consensus 133 a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll--~~~~~~v~~~a~~aL~~La~-~~~~~~~i 200 (246)
..+.+++||. ..++.++.+.+-|+++.++.-+ .+++|-+++.+..|+.+|.. +.++.+-+
T Consensus 376 vir~ia~lcy--------k~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i 438 (478)
T KOG2676|consen 376 VIRFIAFLCY--------KFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKII 438 (478)
T ss_pred HHHHHHHHHH--------hCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHH
Confidence 5578889984 5678999999999999888766 45589999999999999987 44454333
No 295
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=46.27 E-value=2.3e+02 Score=25.65 Aligned_cols=152 Identities=14% Similarity=0.023 Sum_probs=87.2
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHH--hc-------CCChHHHHHHHHHHHHhh-CC
Q 025930 33 SLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTA--AN-------AEDPQTLRMVAGAIANLC-GN 102 (246)
Q Consensus 33 ~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll--~~-------~~~~~~~~~a~~aL~~L~-~~ 102 (246)
.+...|..+.....+..+..++.-|+.+...-..+.....+..|+.+. ++ ..|..+...+..+|+|+. ++
T Consensus 49 ~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~S 128 (532)
T KOG4464|consen 49 RIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFHS 128 (532)
T ss_pred HHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhcc
Confidence 455566665445555567777777777754433333222233333332 11 124567778899999998 77
Q ss_pred chhHHHHHhcCCHHHHHHHhcC-----CCHHHHHHHHHHHHHhhcccccccccCChhhhHH-HHhCCChHHHHHcccCC-
Q 025930 103 DKLQLKLRGEGGIKALLGMVRC-----GHPDVLAQVARGIANFAKCESRASTQGTKTGRSL-LIDDGALPWIVQNSNNE- 175 (246)
Q Consensus 103 ~~~~~~l~~~g~i~~L~~ll~~-----~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~-l~~~g~i~~Lv~ll~~~- 175 (246)
+..+....+......++..+.. .-.++...=++.|.-++..+ .+.|.. +.+.++++.+-+.+...
T Consensus 129 q~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale--------~~~Rsql~~~l~Gl~~lt~~led~l 200 (532)
T KOG4464|consen 129 QRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALE--------TDHRSQLIAELLGLELLTNWLEDKL 200 (532)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhh--------HHHHHHHHHHhcccHHHHHHhhccc
Confidence 7888888887766666665532 11223344445555554321 355555 44778888888877543
Q ss_pred -----------Chh---HHHHHHHHHHHhcc
Q 025930 176 -----------ASP---IRRHIELALCHLAQ 192 (246)
Q Consensus 176 -----------~~~---v~~~a~~aL~~La~ 192 (246)
+|+ .-..++.++.|+..
T Consensus 201 gidse~n~~~l~pqe~n~a~EaLK~~FNvt~ 231 (532)
T KOG4464|consen 201 GIDSEINVPPLNPQETNRACEALKVFFNVTC 231 (532)
T ss_pred cCCCCcCCCCCCHHHHHHHHHHHHHHhheee
Confidence 122 23345666777765
No 296
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=45.98 E-value=1.2e+02 Score=22.57 Aligned_cols=71 Identities=11% Similarity=0.031 Sum_probs=48.2
Q ss_pred CHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC--cchHHHHHhcCcHHH-HHHHHhcC--CChHHHHHHHHHHHHhh
Q 025930 30 GLTSLLMLLGSSEDETIHRVAAGAIANLAMN--ETNQELIMTQGGIGL-LSTTAANA--EDPQTLRMVAGAIANLC 100 (246)
Q Consensus 30 ~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~--~~~~~~i~~~g~i~~-L~~ll~~~--~~~~~~~~a~~aL~~L~ 100 (246)
++..|-..+.++.++.++..|...|-.|..+ ......|...+.+.- |+.++... .+..++...+..+...+
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~ 114 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWA 114 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHH
Confidence 4677777776544777777788888888777 445566777777775 77777632 23467777777776665
No 297
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=45.75 E-value=2.3e+02 Score=25.60 Aligned_cols=133 Identities=13% Similarity=0.064 Sum_probs=78.3
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhc----------CCCHHHHHHHHHHHHHhhccc
Q 025930 75 LLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVR----------CGHPDVLAQVARGIANFAKCE 144 (246)
Q Consensus 75 ~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~----------~~~~~~~~~a~~~L~nL~~~~ 144 (246)
.++..+..+.....+...+..++-|+.+...-+-+...--+..|+.+.. ..+.++...+...|+|+..
T Consensus 49 ~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf-- 126 (532)
T KOG4464|consen 49 RIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVF-- 126 (532)
T ss_pred HHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHh--
Confidence 4455565544444555667777777755444333222222333333331 2356788899999999996
Q ss_pred ccccccCChhhhHHHHhCCChHHHHHcccCC-----ChhHHHHHHHHHHHhcc-CchhHHHHH-hCCcHHHHHHHHhc
Q 025930 145 SRASTQGTKTGRSLLIDDGALPWIVQNSNNE-----ASPIRRHIELALCHLAQ-HEVNAKDMI-SGGALWELVRISRD 215 (246)
Q Consensus 145 ~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~-----~~~v~~~a~~aL~~La~-~~~~~~~i~-~~g~i~~L~~ll~~ 215 (246)
.+...+....+......+.+.+... -..+...=++.|.-|.- ..+.|..++ +.+|++.+..++.+
T Consensus 127 ------~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led 198 (532)
T KOG4464|consen 127 ------HSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLED 198 (532)
T ss_pred ------ccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhc
Confidence 4567777777776666665544221 12344444555555533 556776665 57999999998864
No 298
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=43.42 E-value=3.2e+02 Score=26.53 Aligned_cols=107 Identities=11% Similarity=0.084 Sum_probs=64.5
Q ss_pred CHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCc--chHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh-CCchhH
Q 025930 30 GLTSLLMLLGSSEDETIHRVAAGAIANLAMNE--TNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC-GNDKLQ 106 (246)
Q Consensus 30 ~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~--~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~-~~~~~~ 106 (246)
....+...+..+ ++..-.....++.++..-+ ..+. +....+.-..-..+ .-..+......+|..++ -+++.-
T Consensus 442 lW~~l~~~~~~~-~~~la~~lL~~~~~l~~l~~~~~~~---~~~~~~~~~~~~N~-~~~~~~~~~~~il~rls~~~~~~L 516 (727)
T PF12726_consen 442 LWKALLKSLDSD-NPDLAKALLKSLSPLIGLEKFPPKK---EKDELDPAKTQFNK-SLGQITDLISQILERLSDFDPSHL 516 (727)
T ss_pred HHHHHHHhhcCC-ChHHHHHHHHHHHHhccccccCCcc---cccCcchHHHHHHH-HHHHHHHHHHHHHHHHhcCCHHHH
Confidence 345556666543 5555555666666664331 1111 11122222222222 12345666778888888 344444
Q ss_pred HH-HHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 025930 107 LK-LRGEGGIKALLGMVRCGHPDVLAQVARGIANFA 141 (246)
Q Consensus 107 ~~-l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~ 141 (246)
.. +-+.++...++.++-+++.++.+.|...+....
T Consensus 517 ~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~ 552 (727)
T PF12726_consen 517 KELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAF 552 (727)
T ss_pred HHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHh
Confidence 44 446789999999999999999999999999877
No 299
>PF04064 DUF384: Domain of unknown function (DUF384); InterPro: IPR007206 This is a protein of unknown function. It is found C-terminal to another domain of unknown function (IPR007205 from INTERPRO).
Probab=42.21 E-value=79 Score=19.80 Aligned_cols=43 Identities=16% Similarity=0.122 Sum_probs=30.9
Q ss_pred HHHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHH
Q 025930 186 ALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRT 228 (246)
Q Consensus 186 aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~ 228 (246)
+|.-||....+|+.+.+.|+-+.+-.+=...+++.+..+.-+.
T Consensus 1 ~LllL~~T~~GR~~lR~~~vY~IlRe~h~~E~d~~V~e~~erl 43 (58)
T PF04064_consen 1 ALLLLCATREGREYLREKGVYPILRELHKWEEDEEVQEACERL 43 (58)
T ss_pred CHhHHhccHHHHHHHHHcCchHHHHHHHhccCCHHHHHHHHHH
Confidence 3567888888999999888888776666656666666555443
No 300
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=41.20 E-value=55 Score=24.87 Aligned_cols=122 Identities=15% Similarity=0.101 Sum_probs=76.8
Q ss_pred ccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC---cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHH
Q 025930 20 SNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN---ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAI 96 (246)
Q Consensus 20 ~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~---~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL 96 (246)
+-=+.+.|...+..+++.++......++......+.-+-.+ +..-.-+...+.+--++..--+..|+++...=...|
T Consensus 17 ~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~~ee~l~yYIsfL 96 (149)
T PF09758_consen 17 SFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFSDEEVLSYYISFL 96 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCCcchhHHHHHHHH
Confidence 34467778889999999998844555565555555555433 334444455566666665444456788888888999
Q ss_pred HHhh--CCchhHHHHHh--cCCHHHHHHHhc---CCCHHHHHHHHHHHHHhh
Q 025930 97 ANLC--GNDKLQLKLRG--EGGIKALLGMVR---CGHPDVLAQVARGIANFA 141 (246)
Q Consensus 97 ~~L~--~~~~~~~~l~~--~g~i~~L~~ll~---~~~~~~~~~a~~~L~nL~ 141 (246)
+.+| -+++...-+.. .+..|.+...++ ++++.++.++-....|+.
T Consensus 97 K~lSlkln~~tv~fffn~~~~~FPL~~~aikf~~h~d~Mvr~avR~i~Lni~ 148 (149)
T PF09758_consen 97 KTLSLKLNKDTVQFFFNERNDSFPLYTEAIKFYNHPDSMVRTAVRTITLNIY 148 (149)
T ss_pred HHHHhhcCCCceeEeEecCCCCCCcHHHHHHhhcCcchHHHHHHHHHHHhhc
Confidence 9998 45555444443 456777766554 666666655555555543
No 301
>PF15573 Imm27: Immunity protein 27
Probab=40.14 E-value=34 Score=27.81 Aligned_cols=80 Identities=18% Similarity=0.319 Sum_probs=49.9
Q ss_pred HHhCC---HHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCC
Q 025930 26 VEAGG---LTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGN 102 (246)
Q Consensus 26 ~~~g~---i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~ 102 (246)
...|- =+-||+++++..|+.+...|.+..+++|.|++.|. .+.+.. +.+.+...+.-.+.+|...|+
T Consensus 40 ~K~GDFsvK~LLiqLMN~TkDE~vLNLCiRlFcSV~THdDL~~----~nNl~F----Ls~asE~~v~TF~s~A~~tlS-- 109 (259)
T PF15573_consen 40 LKKGDFSVKNLLIQLMNQTKDEAVLNLCIRLFCSVATHDDLRD----SNNLRF----LSSASEFGVFTFASGAITTLS-- 109 (259)
T ss_pred HHhCCchhhHHHHHHHhcchhHHHHHHHHHHHHhhcchHhhhc----ccceeh----HhhhhHHHHHHHHHHhhccch--
Confidence 34454 34579999998888888889999999999975543 222222 222222334444555555442
Q ss_pred chhHHHHHhcCCHHHHHHHhcC
Q 025930 103 DKLQLKLRGEGGIKALLGMVRC 124 (246)
Q Consensus 103 ~~~~~~l~~~g~i~~L~~ll~~ 124 (246)
..+||-|+.++..
T Consensus 110 ---------yeVIPYLLaLlee 122 (259)
T PF15573_consen 110 ---------YEVIPYLLALLEE 122 (259)
T ss_pred ---------hhHHHHHHHHHHH
Confidence 3457777777764
No 302
>KOG2312 consensus Predicted transcriptional regulator, contains ARID domain [Transcription]
Probab=39.76 E-value=3.9 Score=38.39 Aligned_cols=156 Identities=13% Similarity=0.019 Sum_probs=96.5
Q ss_pred HHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhcCCCHHHH
Q 025930 51 AGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVL 130 (246)
Q Consensus 51 ~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~ 130 (246)
..+..+|+.+..++..++..--+-.++-+.-+.....+...|+.+..||+.-... .+-....+..+.+-+.+.|--+.
T Consensus 14 ~tv~r~LSf~~~n~~~~~~~~p~~~~lVm~a~~~ws~~~Vqal~s~~nlaqpt~~--e~S~~~~L~t~t~Gi~S~drfli 91 (847)
T KOG2312|consen 14 PTVSRMLSFKRQNQQQHSPAPPPQQVLVMVAQPQWSQMQVQALQSNANLAQPTSG--ESSLIKQLLTPTRGISSPDRFLI 91 (847)
T ss_pred ceeeeeeccchhhhcccCCCCChhheeeeecccccchhhhHhhhhhcccCCcchh--hhhHHHHHhhhccCCCCCCceeE
Confidence 3456788999889888886555444444444445677888999999999852111 11111123334444556666777
Q ss_pred HHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhcc-CchhHHHHHh-CCcHHH
Q 025930 131 AQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQ-HEVNAKDMIS-GGALWE 208 (246)
Q Consensus 131 ~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~-~~~~~~~i~~-~g~i~~ 208 (246)
-.+..+|.+||.-+ +++..............++..+...|--..-..+.+|..|+. ....+..|.+ .+.++.
T Consensus 92 mr~lEIl~~lcgrE------gN~qvIc~~l~~d~y~~iv~~ltl~Dvllvi~Tle~LyalsemGdvac~~Is~v~klidq 165 (847)
T KOG2312|consen 92 MRALEILPPLCGRE------GNPQVICQVLSNDAYGFIVQGLTLADVLLVIQTLEQLYALSEMGDVACVPISNVQKLIDQ 165 (847)
T ss_pred eeccccCcccccCC------CCceeehhhhchHHHHHHHhccchhHeehhhhhhhHHhcccccCCccchhhhhhhhhhhh
Confidence 78888999999654 333334444455567777777766666666667777777755 3233344443 577777
Q ss_pred HHHHHh
Q 025930 209 LVRISR 214 (246)
Q Consensus 209 L~~ll~ 214 (246)
|+.+..
T Consensus 166 LVsl~t 171 (847)
T KOG2312|consen 166 LVSLST 171 (847)
T ss_pred hhccch
Confidence 776653
No 303
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=39.34 E-value=1.3e+02 Score=21.46 Aligned_cols=79 Identities=14% Similarity=0.245 Sum_probs=48.4
Q ss_pred ChHHHHHccc-CCChhHHHHHHHHHHHhcc----CchhHHHHH-----------h-CCcHHHHHHHHhcC-CHHHHHHHH
Q 025930 164 ALPWIVQNSN-NEASPIRRHIELALCHLAQ----HEVNAKDMI-----------S-GGALWELVRISRDC-SREDIRTLA 225 (246)
Q Consensus 164 ~i~~Lv~ll~-~~~~~v~~~a~~aL~~La~----~~~~~~~i~-----------~-~g~i~~L~~ll~~~-~~~~~~~~A 225 (246)
.+|.+...+. ...++.+-.+...+..|+. +++..+.+. . .-++-.|+.+++.. +.+..-.-+
T Consensus 7 lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q~~~~~lp~~~ 86 (121)
T PF12397_consen 7 LLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVLNALMESILKNWTQETVQRQALICLIVLCQSQENVDSLPRKV 86 (121)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHcccccccCCHHH
Confidence 4677777777 5677888888888888865 333333332 1 12334455566543 344444666
Q ss_pred HHHHccChhHHHHHHHh
Q 025930 226 HRTLTSSPAFQAEMRRL 242 (246)
Q Consensus 226 ~~~L~~~~~~~~e~~~~ 242 (246)
.+.+...|++...+..+
T Consensus 87 ~~~l~~~~~l~~~L~~l 103 (121)
T PF12397_consen 87 FKALLKLPDLIELLSEL 103 (121)
T ss_pred HHHHHcCccHHHHHHHH
Confidence 77777788777777665
No 304
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=38.54 E-value=2.4e+02 Score=23.63 Aligned_cols=169 Identities=18% Similarity=0.113 Sum_probs=97.1
Q ss_pred HHHH-HHHhcCCCCHHHHHHHHHHHHHhcCCcc--------hHHHHHhcCcHHHHHHHHhcCC----ChHHHHHHHHHHH
Q 025930 31 LTSL-LMLLGSSEDETIHRVAAGAIANLAMNET--------NQELIMTQGGIGLLSTTAANAE----DPQTLRMVAGAIA 97 (246)
Q Consensus 31 i~~L-i~ll~~~~~~~~~~~a~~~L~~la~~~~--------~~~~i~~~g~i~~L~~ll~~~~----~~~~~~~a~~aL~ 97 (246)
+++| +.=|+++ ...+.+...|..|+..++ .|-.+.=...+|.++.-+.+.. ++. ...++..|.
T Consensus 65 lq~Ll~KGL~Ss---~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~-~~~~A~~La 140 (262)
T PF14225_consen 65 LQPLLLKGLRSS---STYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQE-CIEIAEALA 140 (262)
T ss_pred HHHHHhCccCCC---CcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHH-HHHHHHHHH
Confidence 4443 4445554 234556777777765532 2333333344556665555533 233 447778888
Q ss_pred HhhCCchhHHHHHhcCCHHHHHHHhc----CCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHccc
Q 025930 98 NLCGNDKLQLKLRGEGGIKALLGMVR----CGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSN 173 (246)
Q Consensus 98 ~L~~~~~~~~~l~~~g~i~~L~~ll~----~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~ 173 (246)
.+|..... +.+..++.... .+..+-...++..++.-.. ++. +...+-.|..++.
T Consensus 141 ~~a~~~~~-------~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~----------P~~-----~~~~l~~Ll~lL~ 198 (262)
T PF14225_consen 141 QVAEAQGL-------PNLARILSSYAKGRFRDKDDFLSQVVSYLREAFF----------PDH-----EFQILTFLLGLLE 198 (262)
T ss_pred HHHHhCCC-------ccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC----------chh-----HHHHHHHHHHHHh
Confidence 88833211 12333333332 2345566667766665432 111 1246778999999
Q ss_pred CCChhHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHc
Q 025930 174 NEASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLT 230 (246)
Q Consensus 174 ~~~~~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~ 230 (246)
++-+-+|...+..|..+=...+.++. ..+..+..+.++++.+- ..-|.+.|.
T Consensus 199 n~~~w~~~~~L~iL~~ll~~~d~~~~-~~~dlispllrlL~t~~----~~eAL~VLd 250 (262)
T PF14225_consen 199 NGPPWLRRKTLQILKVLLPHVDMRSP-HGADLISPLLRLLQTDL----WMEALEVLD 250 (262)
T ss_pred CCcHHHHHHHHHHHHHHhccccCCCC-cchHHHHHHHHHhCCcc----HHHHHHHHH
Confidence 99999999999999999654444433 45568889999998433 333455444
No 305
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=36.51 E-value=1.3e+02 Score=20.22 Aligned_cols=66 Identities=18% Similarity=0.128 Sum_probs=42.7
Q ss_pred CCChHHHHHcc-cCCChhHHHHHHHHHHHhccCchhHHHHHhCCcHHHH--HHHHhcCCHHHHHHHHHHHHc
Q 025930 162 DGALPWIVQNS-NNEASPIRRHIELALCHLAQHEVNAKDMISGGALWEL--VRISRDCSREDIRTLAHRTLT 230 (246)
Q Consensus 162 ~g~i~~Lv~ll-~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L--~~ll~~~~~~~~~~~A~~~L~ 230 (246)
...+.++..++ ...+.++|+..+.++.++..+.. .-+.+|.-..+ +.....++++.+...|.+++.
T Consensus 16 ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~---~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 16 KDFLKPFEYIMSNNPSIDVRELILECILQILQSRG---ENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhH---HHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 45677888875 44588999999999999977432 33455544332 333333556667777776654
No 306
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=36.27 E-value=85 Score=29.06 Aligned_cols=68 Identities=25% Similarity=0.305 Sum_probs=44.9
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHH-HHHHHHhcCCChHHHHHHHHHHHHhhC
Q 025930 33 SLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIG-LLSTTAANAEDPQTLRMVAGAIANLCG 101 (246)
Q Consensus 33 ~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~-~L~~ll~~~~~~~~~~~a~~aL~~L~~ 101 (246)
.++..+....++.+++.|..++++++.+.++|....-...+. .++.++.. ..+++-+.+..|+..+..
T Consensus 331 ~~lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~-~~~~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 331 KALKSLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVT-PEPRVNKAAARALAILGE 399 (763)
T ss_pred HHHHHHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcc-cccccchhhhHHHHHhhh
Confidence 333333344578899999999999999988888665443333 33455544 346666677777776654
No 307
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=35.68 E-value=2.6e+02 Score=24.56 Aligned_cols=134 Identities=9% Similarity=0.007 Sum_probs=75.9
Q ss_pred CHHHHHHHHHHHHHhcCCcchHHHHHhcCcH---HHHHHHHhcC-CChHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHH
Q 025930 43 DETIHRVAAGAIANLAMNETNQELIMTQGGI---GLLSTTAANA-EDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKAL 118 (246)
Q Consensus 43 ~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i---~~L~~ll~~~-~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L 118 (246)
+..+-..|.+.|+.+-.+++.-..+-+.-+. ...+..+... .+..+....+++|..=.-. ..++...-+..+
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~----~~~~~~~~~~~l 134 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFS----PKIMTSDRVERL 134 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC----CcccchhhHHHH
Confidence 3445666889999888887655555433222 2333334332 2334444444444432111 113333334444
Q ss_pred HHHhc-----CCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCC--ChHHHHHcccCCChhHHHHHHHHHHHhc
Q 025930 119 LGMVR-----CGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDG--ALPWIVQNSNNEASPIRRHIELALCHLA 191 (246)
Q Consensus 119 ~~ll~-----~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g--~i~~Lv~ll~~~~~~v~~~a~~aL~~La 191 (246)
+..+. -++..+....+.++.+|.. ..++.|.+.- -+|.++..+-+....++..|...+..++
T Consensus 135 ~~~l~~i~~~~~s~si~~erL~i~~~ll~-----------q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~ 203 (372)
T PF12231_consen 135 LAALHNIKNRFPSKSIISERLNIYKRLLS-----------QFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAK 203 (372)
T ss_pred HHHHHHhhccCCchhHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 44442 3456677888889999883 5666666442 3777777777777778887766666554
No 308
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=35.63 E-value=3.1e+02 Score=24.20 Aligned_cols=127 Identities=15% Similarity=0.141 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHhcCCcch--HHHHHhcCcHHHHHHHHh-c-CCChHHHHHHHHHHHHhhCCchh-------------HHH
Q 025930 46 IHRVAAGAIANLAMNETN--QELIMTQGGIGLLSTTAA-N-AEDPQTLRMVAGAIANLCGNDKL-------------QLK 108 (246)
Q Consensus 46 ~~~~a~~~L~~la~~~~~--~~~i~~~g~i~~L~~ll~-~-~~~~~~~~~a~~aL~~L~~~~~~-------------~~~ 108 (246)
-++.|+..|..|+..-+. ...+. +.+..+++-.. + ..+...+..|+..+..++..... -..
T Consensus 227 rR~AA~dfl~~L~~~~~~~v~~i~~--~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~ 304 (370)
T PF08506_consen 227 RRRAACDFLRSLCKKFEKQVTSILM--QYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVD 304 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHH
T ss_pred cHHHHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHH
Confidence 455577778788754211 11111 12332222111 1 23456677888888888833211 233
Q ss_pred HHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHH
Q 025930 109 LRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELAL 187 (246)
Q Consensus 109 l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL 187 (246)
+...-++|-|. --.+..|-++..|+..+.-.-.. -.++.+. +++|.+++.|.+++.-|+.+|+.|+
T Consensus 305 Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~----------l~~~~l~--~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 305 FFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQ----------LPKEQLL--QIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGG----------S-HHHHH--HHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhh----------CCHHHHH--HHHHHHHHHhCCCCcchhhhhhhhC
Confidence 33434445443 11144567788888777766632 1122333 4799999999999999999998875
No 309
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.04 E-value=3.1e+02 Score=29.83 Aligned_cols=118 Identities=14% Similarity=0.045 Sum_probs=57.9
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhCC-chhHHHHHhcCCHHHHHHHhcCC---CHHHHHHHHHHHH------Hhhc
Q 025930 73 IGLLSTTAANAEDPQTLRMVAGAIANLCGN-DKLQLKLRGEGGIKALLGMVRCG---HPDVLAQVARGIA------NFAK 142 (246)
Q Consensus 73 i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~-~~~~~~l~~~g~i~~L~~ll~~~---~~~~~~~a~~~L~------nL~~ 142 (246)
+.+++.+.++..++.++..++.++.-+... .......++ -.+..+..++.+. +.++...--+.+. ++..
T Consensus 960 v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve-~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~~alit 1038 (2067)
T KOG1822|consen 960 VSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVE-PTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDEDALIT 1038 (2067)
T ss_pred HHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHH-HHHHHHHHHcCCCCcchhhhhhhhccccccchhHHHHHH
Confidence 456666777766778888888888877622 222222222 2234444555432 2333333333333 4443
Q ss_pred ccccccccCC-hhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhcc
Q 025930 143 CESRASTQGT-KTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQ 192 (246)
Q Consensus 143 ~~~~~~~~~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~ 192 (246)
+.+++..+.. .+....+... .+-...-++.++++.++-.+..+|.++..
T Consensus 1039 tlgpeL~~N~~~d~t~~~rts-~la~~allls~~d~lnqa~ai~clqqlhl 1088 (2067)
T KOG1822|consen 1039 TLGPELGPNGDKDSTSTLRTS-CLAACALLLSHSDPLNQAAAIKCLQQLHL 1088 (2067)
T ss_pred hcccccCCCCcccchhHHHHH-HHHHHHHhcCCCccchHHHHHHHHHHHHh
Confidence 3322222111 1112222211 12222334455688888999999998853
No 310
>KOG2029 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.92 E-value=2.2e+02 Score=26.95 Aligned_cols=82 Identities=16% Similarity=0.123 Sum_probs=62.0
Q ss_pred hhhhHHHHhCCChHHHHHc--ccCCChhHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHc
Q 025930 153 KTGRSLLIDDGALPWIVQN--SNNEASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLT 230 (246)
Q Consensus 153 ~~~~~~l~~~g~i~~Lv~l--l~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~ 230 (246)
.+.-..+-..|+.+.+..+ +..++..+.....+.+.|++.++.-..-+..+|.+..+-.+.+.+++-..+..+.+++.
T Consensus 281 ~~lsd~l~~dg~~q~~~~~~e~~rd~~~v~~~l~rvlanms~~~~~~~s~~~S~W~sl~s~~~t~~d~l~~~~~sak~ma 360 (697)
T KOG2029|consen 281 FELSDGLWDDGGLQHLAVLQEFDRDGQVVMRALMRVLANMSEDEKLALSDSRSGWVSLVSEMSTTPDSLRERALSAKLMA 360 (697)
T ss_pred HHHHHHHHhcchHHHHHHHHHHhcCChhhhHHHHHHHHhhhcccccchhhhhhhhHHHHHHHhcCchhHHHHHHHHHHhc
Confidence 3444556667776655443 34556778888899999999888888889999999977777776656667788888888
Q ss_pred cChh
Q 025930 231 SSPA 234 (246)
Q Consensus 231 ~~~~ 234 (246)
+.++
T Consensus 361 n~~~ 364 (697)
T KOG2029|consen 361 NLDS 364 (697)
T ss_pred cCch
Confidence 8776
No 311
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=34.62 E-value=2.5e+02 Score=22.87 Aligned_cols=127 Identities=14% Similarity=0.106 Sum_probs=81.3
Q ss_pred ChHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhcCC-------------CHH-HHHHHH----HHHHHhhccccc
Q 025930 85 DPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCG-------------HPD-VLAQVA----RGIANFAKCESR 146 (246)
Q Consensus 85 ~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~~~-------------~~~-~~~~a~----~~L~nL~~~~~~ 146 (246)
+......+|..+..|...++....+.+.+.++.+...|..- +++ +....+ ..++-|+
T Consensus 77 ~~~y~~vGc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS----- 151 (226)
T PF14666_consen 77 NQKYVRVGCQLLETLLSSPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLS----- 151 (226)
T ss_pred chHHHHHHHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHh-----
Confidence 35566678888888888888888888889888888877522 111 222222 4555666
Q ss_pred ccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHH
Q 025930 147 ASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAH 226 (246)
Q Consensus 147 ~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~ 226 (246)
.++.+.+.+.+.+++..+..++...+. .......|.+|=.+. +|..+.+++-.-..+.+.+|..|.
T Consensus 152 ----~~~~Gl~lLe~~~if~~l~~i~~~~~~--~~l~klil~~LDY~~--------~~~~R~iLsKaLt~~s~~iRl~aT 217 (226)
T PF14666_consen 152 ----STPNGLKLLERWNIFTMLYHIFSLSSR--DDLLKLILSSLDYSV--------DGHPRIILSKALTSGSESIRLYAT 217 (226)
T ss_pred ----CChhHHHHHHHCCHHHHHHHHHccCch--HHHHHHHHhhCCCCC--------ccHHHHHHHHHHhcCCHHHHHHHH
Confidence 557999999999999999999876532 222233555553222 223334333333355667888888
Q ss_pred HHHc
Q 025930 227 RTLT 230 (246)
Q Consensus 227 ~~L~ 230 (246)
+.|.
T Consensus 218 ~~L~ 221 (226)
T PF14666_consen 218 KHLR 221 (226)
T ss_pred HHHH
Confidence 8775
No 312
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.45 E-value=2.9e+02 Score=28.50 Aligned_cols=132 Identities=10% Similarity=0.000 Sum_probs=79.3
Q ss_pred CcHHHHHHHHhcCCChHHHHHHHHHHHHhh-CCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccc
Q 025930 71 GGIGLLSTTAANAEDPQTLRMVAGAIANLC-GNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRAST 149 (246)
Q Consensus 71 g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~-~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~ 149 (246)
+++..|-.+.-+.+++..+......+..+- .+++|....-+.-.+|.++.-+......++...+.++-.-..--
T Consensus 466 eAvqmLqdiFLkaenkdlqaeVlnrmfkIftshpeNYricqelytvpllvlnmegfPsslqvkiLkilEyAVtvv----- 540 (2799)
T KOG1788|consen 466 EAVQMLQDIFLKAENKDLQAEVLNRMFKIFTSHPENYRICQELYTVPLLVLNMEGFPSSLQVKILKILEYAVTVV----- 540 (2799)
T ss_pred HHHHHHHHHHHHhcCcchhhHHHHHHHHHhccChHHhhHHhhccccchhhhhhcCCChHHHHHHHHHHHHHHhhh-----
Confidence 344455544444466777777788888776 77888877777788999988886554556665555444322100
Q ss_pred cCChhhhHHHHhCCChHHHHHcccCC-ChhHHHHHHHHHHHh-ccCchhHHHHHhCCcHHHHHHHHhc
Q 025930 150 QGTKTGRSLLIDDGALPWIVQNSNNE-ASPIRRHIELALCHL-AQHEVNAKDMISGGALWELVRISRD 215 (246)
Q Consensus 150 ~~~~~~~~~l~~~g~i~~Lv~ll~~~-~~~v~~~a~~aL~~L-a~~~~~~~~i~~~g~i~~L~~ll~~ 215 (246)
.....++ +-.|.-+++.+ ....+...+.....| +++...++.+++-|.+..|...++.
T Consensus 541 -ncvPeqE-------LlSLCvLLqqpIssalkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkq 600 (2799)
T KOG1788|consen 541 -NCVPEQE-------LLSLCVLLQQPISSALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQ 600 (2799)
T ss_pred -ccCcHHH-------HHHHHHHhcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 0001111 22344455444 333444344333333 5587889999999999999888764
No 313
>PF15573 Imm27: Immunity protein 27
Probab=32.26 E-value=2e+02 Score=23.50 Aligned_cols=95 Identities=14% Similarity=0.125 Sum_probs=50.3
Q ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhccC
Q 025930 115 IKALLGMVR-CGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQH 193 (246)
Q Consensus 115 i~~L~~ll~-~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~ 193 (246)
=+.|+++|. ..|+.+..-|.+.+|..|.++ +.|+ .+-+.+|..- ....+-.-+..|...|+.
T Consensus 48 K~LLiqLMN~TkDE~vLNLCiRlFcSV~THd---------DL~~----~nNl~FLs~a---sE~~v~TF~s~A~~tlSy- 110 (259)
T PF15573_consen 48 KNLLIQLMNQTKDEAVLNLCIRLFCSVATHD---------DLRD----SNNLRFLSSA---SEFGVFTFASGAITTLSY- 110 (259)
T ss_pred hHHHHHHHhcchhHHHHHHHHHHHHhhcchH---------hhhc----ccceehHhhh---hHHHHHHHHHHhhccchh-
Confidence 356777776 456778888999999999653 3222 2333332211 122333444445444443
Q ss_pred chhHHHHHhCCcHHHHHHHHhc-CCHHHHHHHHHHHHccChhHH
Q 025930 194 EVNAKDMISGGALWELVRISRD-CSREDIRTLAHRTLTSSPAFQ 236 (246)
Q Consensus 194 ~~~~~~i~~~g~i~~L~~ll~~-~~~~~~~~~A~~~L~~~~~~~ 236 (246)
..+|-|+.++.+ .+..++..+....|.+.-.++
T Consensus 111 ----------eVIPYLLaLleeWed~td~~~~Irdsld~fln~~ 144 (259)
T PF15573_consen 111 ----------EVIPYLLALLEEWEDITDTEIAIRDSLDSFLNYR 144 (259)
T ss_pred ----------hHHHHHHHHHHHHhccchHHHHHHHHHHHHhhHH
Confidence 266777777765 222444444455554433333
No 314
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=31.48 E-value=1.2e+02 Score=25.67 Aligned_cols=54 Identities=17% Similarity=0.056 Sum_probs=41.4
Q ss_pred CCChHHHHHcccCCChhHHHHHHHHHHHhccC---------------chhHHHHHhCCcHHHHHHHHhc
Q 025930 162 DGALPWIVQNSNNEASPIRRHIELALCHLAQH---------------EVNAKDMISGGALWELVRISRD 215 (246)
Q Consensus 162 ~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~---------------~~~~~~i~~~g~i~~L~~ll~~ 215 (246)
...+..+++-+...+...|..|+++|..++.. ..|...+.++|+++.|+.+++.
T Consensus 59 ~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~ 127 (293)
T PF07923_consen 59 KDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKM 127 (293)
T ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 35677888888888999999999999999641 1123444589999999999974
No 315
>PRK09169 hypothetical protein; Validated
Probab=29.90 E-value=8.4e+02 Score=27.41 Aligned_cols=148 Identities=18% Similarity=0.105 Sum_probs=78.8
Q ss_pred CHHHHHHHhcC-CCCHHHHHHHHHHHH-HhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhC-CchhH
Q 025930 30 GLTSLLMLLGS-SEDETIHRVAAGAIA-NLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCG-NDKLQ 106 (246)
Q Consensus 30 ~i~~Li~ll~~-~~~~~~~~~a~~~L~-~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~-~~~~~ 106 (246)
.|..+++.|+. ++++..+. ++..|. .|+.+...+..+ +...+..+++-+++-++......+...|..-.. ++...
T Consensus 164 ~v~~lLNalSKWP~~~~c~~-aa~~lA~~la~~~~l~~al-~~q~va~~lnalSKwp~~~~cr~a~~~lA~rL~~~~~l~ 241 (2316)
T PRK09169 164 SFALLLNALSKWPDNTDCQT-AAEQLADRLASDSRLLQAM-DAQEVANALNALSKWPDSPRCRNAAERLAERLADEPGLL 241 (2316)
T ss_pred HHHHHHHHhccCCCchHHHH-HHHHHHHHhccCHHHHHhc-chHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhcChHHH
Confidence 35556666655 44455444 444444 446666666554 344566777777776666667777777766653 33333
Q ss_pred HHHHhcCCHHHHHHHhcC-CCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHH
Q 025930 107 LKLRGEGGIKALLGMVRC-GHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIEL 185 (246)
Q Consensus 107 ~~l~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~ 185 (246)
..+ +.--+..++.-|+. ++.+....++..|..... ..+..+..+-..++--.|-.+.+.++.+.+..++.
T Consensus 242 ~~l-~~q~va~~LNAlSKWp~~~~c~~aa~~lA~rla--------~~~~lr~~~~~Q~vAN~LNALSKwp~~~~cr~aa~ 312 (2316)
T PRK09169 242 QSL-RAQEVALLLNALSKWPDDEACRQAAEALAARLA--------REPGLRLALDPQGVANALNALSKWPDTEACRQAAE 312 (2316)
T ss_pred Hhc-CHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHh--------cChhhhhhcCHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 222 22235556666653 333444445555554321 33555665555555555555666555555554444
Q ss_pred HHH
Q 025930 186 ALC 188 (246)
Q Consensus 186 aL~ 188 (246)
.|.
T Consensus 313 ~LA 315 (2316)
T PRK09169 313 ALA 315 (2316)
T ss_pred HHH
Confidence 443
No 316
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=29.87 E-value=62 Score=24.65 Aligned_cols=32 Identities=38% Similarity=0.490 Sum_probs=21.2
Q ss_pred hCC--HHHHHHHhcCCCCHHHHHHHHHHHHHhcCC
Q 025930 28 AGG--LTSLLMLLGSSEDETIHRVAAGAIANLAMN 60 (246)
Q Consensus 28 ~g~--i~~Li~ll~~~~~~~~~~~a~~~L~~la~~ 60 (246)
.|| |++||.+|++. |+.+-..|+.+|-+--.-
T Consensus 91 ~GGYNV~~LI~~L~~~-d~~lA~~Aa~aLk~TlLv 124 (154)
T PF11791_consen 91 LGGYNVQPLIDLLKSD-DEELAEEAAEALKNTLLV 124 (154)
T ss_dssp -SSTTHHHHHHGG--G--TTTHHHHHHHHHT--TT
T ss_pred cCCCcHHHHHHHHcCC-cHHHHHHHHHHHHhhHHH
Confidence 455 99999999875 667788899999876444
No 317
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.62 E-value=1.7e+02 Score=26.89 Aligned_cols=69 Identities=13% Similarity=0.052 Sum_probs=52.6
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCC--ChhHHHHHHHHHHH
Q 025930 114 GIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNE--ASPIRRHIELALCH 189 (246)
Q Consensus 114 ~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~--~~~v~~~a~~aL~~ 189 (246)
++..|.+.+.+.++.++..|+.+|--+..+ ....+...+.+.+++.-+|.+.+.. +..||+.++..|-.
T Consensus 39 AvralkKRi~~k~s~vq~lALtlLE~cvkN-------CG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~ 109 (470)
T KOG1087|consen 39 AVRALKKRLNSKNSKVQLLALTLLETCVKN-------CGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDT 109 (470)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHh-------hhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHH
Confidence 467777778888888888888866655542 2257777888999999999999776 66899998877753
No 318
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=29.21 E-value=2.6e+02 Score=21.23 Aligned_cols=82 Identities=16% Similarity=0.038 Sum_probs=56.7
Q ss_pred HHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHH-hCC-ChHHHHH-cccCCC--hhHHHH
Q 025930 108 KLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLI-DDG-ALPWIVQ-NSNNEA--SPIRRH 182 (246)
Q Consensus 108 ~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~-~~g-~i~~Lv~-ll~~~~--~~v~~~ 182 (246)
.+++....+.+++.+.++++.+...+++++..+.. ..+..+. +-+ .++.+.. ++.+++ ...|..
T Consensus 68 ~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~-----------~~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~ 136 (168)
T PF12783_consen 68 NLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLS-----------RFRSHLKLELEVFLSHIILRILESDNSSLWQKEL 136 (168)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHH
Confidence 34566677888888887779999999999999873 4444433 222 2445544 555444 467888
Q ss_pred HHHHHHHhccCchhHHHH
Q 025930 183 IELALCHLAQHEVNAKDM 200 (246)
Q Consensus 183 a~~aL~~La~~~~~~~~i 200 (246)
++.++..++.++.....+
T Consensus 137 ~Le~l~~l~~~p~~l~~l 154 (168)
T PF12783_consen 137 ALEILRELCKDPQFLVDL 154 (168)
T ss_pred HHHHHHHHHhChhHHHHH
Confidence 999999999988764333
No 319
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=28.40 E-value=3.5e+02 Score=22.55 Aligned_cols=121 Identities=11% Similarity=0.044 Sum_probs=72.4
Q ss_pred HHhcCCHH-HHHHHhc--CCCHHHHHHHHHHHHHhhccccc------ccc----------cCChhhhHHHHhCCChHHHH
Q 025930 109 LRGEGGIK-ALLGMVR--CGHPDVLAQVARGIANFAKCESR------AST----------QGTKTGRSLLIDDGALPWIV 169 (246)
Q Consensus 109 l~~~g~i~-~L~~ll~--~~~~~~~~~a~~~L~nL~~~~~~------~~~----------~~~~~~~~~l~~~g~i~~Lv 169 (246)
+.+.++++ -|+.+|. .+++.+...++..|.+|++.... .+. ..--.+|+++.+.+++..++
T Consensus 36 lg~~~iv~~DLiPiL~~~~~~~~l~~~~l~LLV~LT~P~~~~~~~~~~~~~~~~~~~~l~~~l~~yK~afl~~~~l~~~~ 115 (266)
T PF04821_consen 36 LGEWNIVQKDLIPILISYKDDDKLFLACLRLLVNLTWPIELLVESQPKDKNQRRNIPELLKYLQSYKEAFLDPRVLKALI 115 (266)
T ss_pred HHHhchhhhhHHHHHHhccCchHHHHHHHHHHHHhCCCHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 33444433 3444443 23678899999999999973111 000 11245677888888888888
Q ss_pred HcccCC-----------ChhHHHHHHHHHHHhccCch-------------h----HHHHHhCCcHHHHHHHHhcCCHHHH
Q 025930 170 QNSNNE-----------ASPIRRHIELALCHLAQHEV-------------N----AKDMISGGALWELVRISRDCSREDI 221 (246)
Q Consensus 170 ~ll~~~-----------~~~v~~~a~~aL~~La~~~~-------------~----~~~i~~~g~i~~L~~ll~~~~~~~~ 221 (246)
+++.+. +..+-+..+..+.|+-.-++ . ...+.++|....|+.+.++.+..+.
T Consensus 116 ~~l~~~l~~~~~~rt~~d~~ii~lvL~LiRNlL~Ip~~~~~~~~~~~~~~~~d~li~~l~~~~v~~lLL~l~s~~~~~~f 195 (266)
T PF04821_consen 116 RLLLPPLEKDWEDRTERDNLIIELVLTLIRNLLAIPDPPSASKRSDEDSSLHDQLIWALFESGVLDLLLTLASSPQESDF 195 (266)
T ss_pred HHHhHHhhcccccCCHHHHHHHHHHHHHHHHHhcCCCCcccccccchhHHHHHHHHHHHHHcCHHHHHHHHHhCccccch
Confidence 766331 44566778888888843110 1 2333468888888888887644444
Q ss_pred HHHHHHHH
Q 025930 222 RTLAHRTL 229 (246)
Q Consensus 222 ~~~A~~~L 229 (246)
.....+.+
T Consensus 196 ~~~lLEIi 203 (266)
T PF04821_consen 196 NLLLLEII 203 (266)
T ss_pred hhHHHHHH
Confidence 44444433
No 320
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=28.36 E-value=1.3e+02 Score=21.85 Aligned_cols=49 Identities=14% Similarity=0.227 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHH
Q 025930 127 PDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELAL 187 (246)
Q Consensus 127 ~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL 187 (246)
+++...+..++...... ---..+.+.+.++.+.+++ .+++.+..|+.+|
T Consensus 100 ~~~~~~~L~~l~s~i~~----------~~~~~i~~~~~l~~~~~~l--~~~~~~~~A~~cl 148 (148)
T PF08389_consen 100 EELVKAALKCLKSWISW----------IPIELIINSNLLNLIFQLL--QSPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHTTT----------S-HHHHHSSSHHHHHHHHT--TSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh----------CCHHHhccHHHHHHHHHHc--CCHHHHHHHHHhC
Confidence 78888999988887632 2234455677899999999 4555688888775
No 321
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=27.80 E-value=1.4e+02 Score=25.33 Aligned_cols=62 Identities=16% Similarity=0.135 Sum_probs=42.7
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccc------cCChhhhHHHHhCCChHHHHHcccC
Q 025930 113 GGIKALLGMVRCGHPDVLAQVARGIANFAKCESRAST------QGTKTGRSLLIDDGALPWIVQNSNN 174 (246)
Q Consensus 113 g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~------~~~~~~~~~l~~~g~i~~Lv~ll~~ 174 (246)
..+..+++-|.+.+...+..|+++|..++...=..+. .....+...+.+.|+++.+..+++.
T Consensus 60 ~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~ 127 (293)
T PF07923_consen 60 DFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKM 127 (293)
T ss_pred HHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3466788888888888888999999988742100000 1225666777889999999988843
No 322
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=27.22 E-value=4.5e+02 Score=23.46 Aligned_cols=35 Identities=17% Similarity=0.217 Sum_probs=26.0
Q ss_pred HHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 025930 22 QEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANL 57 (246)
Q Consensus 22 ~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~l 57 (246)
.+..++...+..|+.+++++ |+.-|.....+|.++
T Consensus 126 ~~~~i~~~fi~~Ll~l~~S~-D~rER~~lk~~l~~i 160 (409)
T PF01603_consen 126 AKKYIDQKFIKKLLELFDSP-DPRERDYLKTILHRI 160 (409)
T ss_dssp CTTTS-HHHHHHHHHTTTSS-THHHHHHHHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHcCCC-CHHHHHHHHHHHHHH
Confidence 44566777899999999996 776677767777766
No 323
>KOG2029 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.57 E-value=3.9e+02 Score=25.43 Aligned_cols=84 Identities=15% Similarity=0.194 Sum_probs=55.6
Q ss_pred HHHHHHhcCCcchHHHHHhcCcHHHHHHHHhc-CCChHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhcCCCHHH
Q 025930 51 AGAIANLAMNETNQELIMTQGGIGLLSTTAAN-AEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDV 129 (246)
Q Consensus 51 ~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~-~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~ 129 (246)
+.++.....+.+.-..+-..|+...+-.+.+- .++..+....+..+.|++.++.........|.+..+-.+...++ .+
T Consensus 271 a~~~~~~~K~~~lsd~l~~dg~~q~~~~~~e~~rd~~~v~~~l~rvlanms~~~~~~~s~~~S~W~sl~s~~~t~~d-~l 349 (697)
T KOG2029|consen 271 ANALLETPKTFELSDGLWDDGGLQHLAVLQEFDRDGQVVMRALMRVLANMSEDEKLALSDSRSGWVSLVSEMSTTPD-SL 349 (697)
T ss_pred HHHHHhccccHHHHHHHHhcchHHHHHHHHHHhcCChhhhHHHHHHHHhhhcccccchhhhhhhhHHHHHHHhcCch-hH
Confidence 33444444444444455556666555444331 23566777899999999988888899999999997777777775 66
Q ss_pred HHHHHH
Q 025930 130 LAQVAR 135 (246)
Q Consensus 130 ~~~a~~ 135 (246)
++.+..
T Consensus 350 ~~~~~s 355 (697)
T KOG2029|consen 350 RERALS 355 (697)
T ss_pred HHHHHH
Confidence 655543
No 324
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=25.17 E-value=6.3e+02 Score=24.39 Aligned_cols=56 Identities=11% Similarity=0.004 Sum_probs=47.2
Q ss_pred ChhHHHHHHHHHHHhcc-CchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 025930 176 ASPIRRHIELALCHLAQ-HEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTS 231 (246)
Q Consensus 176 ~~~v~~~a~~aL~~La~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~ 231 (246)
.+..|..++..|+.+.. .+...-.|.+...++.|++.++.+.+..+-..|.-+|..
T Consensus 81 ~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~Lim 137 (668)
T PF04388_consen 81 KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIM 137 (668)
T ss_pred CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence 56788899999999966 677778899999999999999988888887888877763
No 325
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=24.83 E-value=40 Score=19.43 Aligned_cols=25 Identities=12% Similarity=0.147 Sum_probs=18.9
Q ss_pred CChHHHHHcccCCChhHHHHHHHHH
Q 025930 163 GALPWIVQNSNNEASPIRRHIELAL 187 (246)
Q Consensus 163 g~i~~Lv~ll~~~~~~v~~~a~~aL 187 (246)
.+...+...+.++++.+|+.|+..|
T Consensus 18 ~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 18 DVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHC
Confidence 4556677778888999999887653
No 326
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=23.78 E-value=2.7e+02 Score=26.89 Aligned_cols=87 Identities=16% Similarity=0.175 Sum_probs=51.0
Q ss_pred hcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHH-hCCChHHHHHcccCCChhHHHHHHHHHHH
Q 025930 111 GEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLI-DDGALPWIVQNSNNEASPIRRHIELALCH 189 (246)
Q Consensus 111 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~-~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~ 189 (246)
..+=+..++..++.+++++++.|+..++......+.+.. ..+.=-+-+. ..+.+..+-.-+ .++..++..+..|.-
T Consensus 46 lk~dLellVervqdpd~~Lq~~aLe~lr~~irsStSSmt-svpkPlKFLrphy~~Lk~i~~~~--~~~n~Kk~laDIlSv 122 (878)
T KOG2005|consen 46 LKGDLELLVERVQDPDPDLQKAALESLREEIRSSTSSMT-SVPKPLKFLRPHYGVLKEIYESM--ADSNLKKWLADILSV 122 (878)
T ss_pred hhhhHHHHHHHhcCCChHHHHHHHHHHHHHHHhcccccc-cCCchhhhhccchhHHHHHHHhc--cCchhHhHHHHHHHH
Confidence 345678999999999999999999999876532111000 0001001111 122233222222 357788999999999
Q ss_pred hccCchhHHHH
Q 025930 190 LAQHEVNAKDM 200 (246)
Q Consensus 190 La~~~~~~~~i 200 (246)
||...+.+...
T Consensus 123 Lamt~se~~~~ 133 (878)
T KOG2005|consen 123 LAMTMSERGEH 133 (878)
T ss_pred Hheeecccchh
Confidence 98854444443
No 327
>PLN03205 ATR interacting protein; Provisional
Probab=23.60 E-value=4.4e+02 Score=23.83 Aligned_cols=59 Identities=14% Similarity=0.081 Sum_probs=38.9
Q ss_pred CHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCC-ChhHHHHHHHHHHHh
Q 025930 126 HPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNE-ASPIRRHIELALCHL 190 (246)
Q Consensus 126 ~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~-~~~v~~~a~~aL~~L 190 (246)
.+.++-.|+.++--+.... ....-|+.+...-+++.+.++|+.+ ...||+.|+..|.-|
T Consensus 385 EE~VrLEAvSIMnVIlmss------na~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLL 444 (652)
T PLN03205 385 EEDVKLEALSIMNIIVMST------DAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLL 444 (652)
T ss_pred hhheeeehhhhhHHhhhcc------chhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHH
Confidence 3445555655544333321 2245577777778899999999766 568999998777655
No 328
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.39 E-value=7.2e+02 Score=24.43 Aligned_cols=132 Identities=13% Similarity=0.069 Sum_probs=79.8
Q ss_pred CChHHHHHHHHHHHHhh--CCchh----HHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhH
Q 025930 84 EDPQTLRMVAGAIANLC--GNDKL----QLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRS 157 (246)
Q Consensus 84 ~~~~~~~~a~~aL~~L~--~~~~~----~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~ 157 (246)
.|.+++.+|+..+.++- .+|+. ...+++ .....|.++|+++.+.++..|.--++-... .+=.
T Consensus 186 ~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~-kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s-----------~fWe 253 (1005)
T KOG1949|consen 186 RNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQ-KQFEELYSLLEDPYPMVRSTAILGVCKITS-----------KFWE 253 (1005)
T ss_pred CchhhhhhHHHHHHHhccCCCCCccHHHHHHHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHH-----------HHHH
Confidence 57889999999999987 44433 344443 346789999999999999887755554331 1111
Q ss_pred HHHhC---CChHHHHH-cccCCChhHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHc
Q 025930 158 LLIDD---GALPWIVQ-NSNNEASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLT 230 (246)
Q Consensus 158 ~l~~~---g~i~~Lv~-ll~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~ 230 (246)
.|-.. ..+..+.. +.++...+||......|-.+..++...-.+.+ ++|.|=..+++ +.+.+|-++...|-
T Consensus 254 ~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~--~Lpal~~~l~D-~se~VRvA~vd~ll 327 (1005)
T KOG1949|consen 254 MIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQ--LLPALRYSLHD-NSEKVRVAFVDMLL 327 (1005)
T ss_pred HcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHH--HHHhcchhhhc-cchhHHHHHHHHHH
Confidence 11111 11222222 33444567888888888888887766444443 45566666663 44456666665553
No 329
>PF10257 RAI16-like: Retinoic acid induced 16-like protein; InterPro: IPR019384 This entry represents a conserved sequence region found in a family of proteins described as retinoic acid-induced protein 16-like proteins. These proteins are conserved from worms to humans, but their function is not known.
Probab=23.32 E-value=5e+02 Score=22.65 Aligned_cols=132 Identities=11% Similarity=0.083 Sum_probs=77.2
Q ss_pred HHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHH-Hhc---CC-ChHHHHHHHHHHH
Q 025930 23 EKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTT-AAN---AE-DPQTLRMVAGAIA 97 (246)
Q Consensus 23 ~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~l-l~~---~~-~~~~~~~a~~aL~ 97 (246)
+.+.+..++..|..+-....++.++..+...+.+|-...+.. .+.......++..+ ++. .. ...+...-...|.
T Consensus 3 Eyll~~~Il~~L~~la~~d~p~g~r~~~l~f~~~Ll~~~~~p-lL~h~~v~~pl~~L~l~~c~~~~~~~~~E~~lV~lL~ 81 (353)
T PF10257_consen 3 EYLLQHQILETLCTLAKADYPPGMRQEVLKFFSRLLSQSQQP-LLPHRSVHRPLQRLLLRSCGESRSASPTEKELVELLN 81 (353)
T ss_pred HHHHHhChHHHHHHHHcccCChHHHHHHHHHHHHHHHhcccc-cccchhhhhhHHHHHHHHhCCCCCCchHHHHHHHHHH
Confidence 356678889999999988777888988999988885443222 22233444555555 432 11 3345555556666
Q ss_pred Hhh----CCchhHHHHHhcC--------------------------CHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccc
Q 025930 98 NLC----GNDKLQLKLRGEG--------------------------GIKALLGMVRCGHPDVLAQVARGIANFAKCESRA 147 (246)
Q Consensus 98 ~L~----~~~~~~~~l~~~g--------------------------~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~ 147 (246)
.+| .++..-..+.+.+ .+..|+..+.++ ..+-..|..++.-+...+
T Consensus 82 ~lc~~i~~~P~ll~~ff~~~~~~~~~~~~~~~~~~~~~~~~~~~f~Lf~~Ll~~vh~e-g~ig~~Are~LLll~~l~--- 157 (353)
T PF10257_consen 82 TLCSKIRKDPSLLNFFFESSPSQAQEEDSESSSSSFAGRTGKSEFLLFSLLLPYVHSE-GRIGDFAREGLLLLMSLA--- 157 (353)
T ss_pred HHHHHHHhCHHHHHHHhcCCccccccccccCcccccCCCCCCccchHHHHHHHHhCcC-cHHHHHHHHHHHHHHhCC---
Confidence 666 5666555554332 245667777665 445555555555444321
Q ss_pred cccCChhhhHHHHh
Q 025930 148 STQGTKTGRSLLID 161 (246)
Q Consensus 148 ~~~~~~~~~~~l~~ 161 (246)
..++...+.+.+
T Consensus 158 --~~~~~~~~~i~~ 169 (353)
T PF10257_consen 158 --SEDPALAQYIVE 169 (353)
T ss_pred --CCCcHHHHHHHH
Confidence 134555666666
No 330
>KOG2312 consensus Predicted transcriptional regulator, contains ARID domain [Transcription]
Probab=22.56 E-value=12 Score=35.45 Aligned_cols=151 Identities=13% Similarity=0.057 Sum_probs=81.8
Q ss_pred hHHhHhhccccccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHH---HHHhcCCC
Q 025930 9 ISVKSEDIRAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLS---TTAANAED 85 (246)
Q Consensus 9 ~~~~~~~~~~~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~---~ll~~~~~ 85 (246)
-.+..+|++..+|+..+...--+...+=+..+..-..++..|....+||+... ..+..-+..|. .-+.+ .|
T Consensus 14 ~tv~r~LSf~~~n~~~~~~~~p~~~~lVm~a~~~ws~~~Vqal~s~~nlaqpt-----~~e~S~~~~L~t~t~Gi~S-~d 87 (847)
T KOG2312|consen 14 PTVSRMLSFKRQNQQQHSPAPPPQQVLVMVAQPQWSQMQVQALQSNANLAQPT-----SGESSLIKQLLTPTRGISS-PD 87 (847)
T ss_pred ceeeeeeccchhhhcccCCCCChhheeeeecccccchhhhHhhhhhcccCCcc-----hhhhhHHHHHhhhccCCCC-CC
Confidence 34677899999999998877554443333333323445667899999998832 11111122222 22233 46
Q ss_pred hHHHHHHHHHHHHhhCCchhHHHHHh---cCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhC
Q 025930 86 PQTLRMVAGAIANLCGNDKLQLKLRG---EGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDD 162 (246)
Q Consensus 86 ~~~~~~a~~aL~~L~~~~~~~~~l~~---~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~ 162 (246)
..+...+..+|.+||..+.|-..+.+ .....-.+..+.-.|.-+...-.-.|-.|+.. ++..+....--.
T Consensus 88 rflimr~lEIl~~lcgrEgN~qvIc~~l~~d~y~~iv~~ltl~Dvllvi~Tle~Lyalsem-------Gdvac~~Is~v~ 160 (847)
T KOG2312|consen 88 RFLIMRALEILPPLCGREGNPQVICQVLSNDAYGFIVQGLTLADVLLVIQTLEQLYALSEM-------GDVACVPISNVQ 160 (847)
T ss_pred ceeEeeccccCcccccCCCCceeehhhhchHHHHHHHhccchhHeehhhhhhhHHhccccc-------CCccchhhhhhh
Confidence 66777889999999966666555443 33444444444444444444444444444421 223322222234
Q ss_pred CChHHHHHcc
Q 025930 163 GALPWIVQNS 172 (246)
Q Consensus 163 g~i~~Lv~ll 172 (246)
+.+..||.+.
T Consensus 161 klidqLVsl~ 170 (847)
T KOG2312|consen 161 KLIDQLVSLS 170 (847)
T ss_pred hhhhhhhccc
Confidence 5566666554
No 331
>PF08454 RIH_assoc: RyR and IP3R Homology associated; InterPro: IPR013662 This eukaryotic domain is found in ryanodine receptors (RyR) and inositol 1, 4, 5-trisphosphate receptors (IP3R) which together form a superfamily of homotetrameric ligand-gated intracellular Ca2+ channels []. There seems to be no known function for this domain []. Also see the IP3-binding domain IPR000699 from INTERPRO and IPR003608 from INTERPRO.
Probab=22.44 E-value=2.9e+02 Score=19.62 Aligned_cols=79 Identities=18% Similarity=0.229 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHhh--CCchhHHHHHhc-------CCHHHHHHHh----------cCCCHHHHHHHHHHHHHhhccccccc
Q 025930 88 TLRMVAGAIANLC--GNDKLQLKLRGE-------GGIKALLGMV----------RCGHPDVLAQVARGIANFAKCESRAS 148 (246)
Q Consensus 88 ~~~~a~~aL~~L~--~~~~~~~~l~~~-------g~i~~L~~ll----------~~~~~~~~~~a~~~L~nL~~~~~~~~ 148 (246)
.....++.|.-+| ++.+.+..+... +.|..+++++ ...+.++...+..+|..++
T Consensus 9 ~~~~ilr~LQLlCEghn~~lQnylR~Q~~~~~s~nlV~~~~~ll~~l~~~~~~~~~~~~~~~~q~~~tL~E~i------- 81 (109)
T PF08454_consen 9 IIQRILRFLQLLCEGHNLDLQNYLRQQPNNKNSYNLVSETVDLLDSLQEFGKDINSDNIELIIQCFDTLTEFI------- 81 (109)
T ss_pred HHHHHHHHHHHHHCcCCHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-------
Confidence 3445566666666 445555555421 1233333333 2334556667777888777
Q ss_pred ccC-ChhhhHHHHhCCChHHHHHcccC
Q 025930 149 TQG-TKTGRSLLIDDGALPWIVQNSNN 174 (246)
Q Consensus 149 ~~~-~~~~~~~l~~~g~i~~Lv~ll~~ 174 (246)
+| ..+++..+.+.+++..+..++..
T Consensus 82 -QGPC~eNQ~~l~~s~~~~~i~~lL~~ 107 (109)
T PF08454_consen 82 -QGPCIENQIALANSKFLDIINDLLSK 107 (109)
T ss_pred -cCCCHHhHHHHHHccHHHHHHHHHhh
Confidence 35 68999999999999988888753
No 332
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=22.24 E-value=4.6e+02 Score=21.82 Aligned_cols=153 Identities=15% Similarity=0.103 Sum_probs=85.4
Q ss_pred CCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCch----
Q 025930 29 GGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDK---- 104 (246)
Q Consensus 29 g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~---- 104 (246)
+.++.|..+|+.. |+..+ .+..+++.. .+++.+-+|+|. ....++.+...++..|-+|+...+
T Consensus 13 ~~LkdL~r~lr~d-d~~~~-~v~r~lg~~--------~iv~~DLiPiL~---~~~~~~~l~~~~l~LLV~LT~P~~~~~~ 79 (266)
T PF04821_consen 13 ECLKDLKRFLRRD-DEDQR-DVRRQLGEW--------NIVQKDLIPILI---SYKDDDKLFLACLRLLVNLTWPIELLVE 79 (266)
T ss_pred HHHHHHHHHHHHh-CcchH-HHHHHHHHh--------chhhhhHHHHHH---hccCchHHHHHHHHHHHHhCCCHHHhcc
Confidence 4467777777774 44322 333333321 122222333332 222356777788888888874111
Q ss_pred ---------------------hHHHHHhcCCHHHHHHHhc-----------CCCHHHHHHHHHHHHHhhccccccccc--
Q 025930 105 ---------------------LQLKLRGEGGIKALLGMVR-----------CGHPDVLAQVARGIANFAKCESRASTQ-- 150 (246)
Q Consensus 105 ---------------------~~~~l~~~g~i~~L~~ll~-----------~~~~~~~~~a~~~L~nL~~~~~~~~~~-- 150 (246)
.|..+.+.+++..++..+. ..+..+.+.++..++|+-.-+.+....
T Consensus 80 ~~~~~~~~~~~~~~l~~~l~~yK~afl~~~~l~~~~~~l~~~l~~~~~~rt~~d~~ii~lvL~LiRNlL~Ip~~~~~~~~ 159 (266)
T PF04821_consen 80 SQPKDKNQRRNIPELLKYLQSYKEAFLDPRVLKALIRLLLPPLEKDWEDRTERDNLIIELVLTLIRNLLAIPDPPSASKR 159 (266)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcccccCCHHHHHHHHHHHHHHHHHhcCCCCcccccc
Confidence 1344555566777776652 124557889999999987642222210
Q ss_pred --CC----hhhhHHHHhCCChHHHHHcccCC-ChhHHHHHHHHHHHhccCc
Q 025930 151 --GT----KTGRSLLIDDGALPWIVQNSNNE-ASPIRRHIELALCHLAQHE 194 (246)
Q Consensus 151 --~~----~~~~~~l~~~g~i~~Lv~ll~~~-~~~v~~~a~~aL~~La~~~ 194 (246)
.+ +..-..+.+.|+...|+.++.+. ..+-....+.++..|-.+.
T Consensus 160 ~~~~~~~~d~li~~l~~~~v~~lLL~l~s~~~~~~f~~~lLEIi~ll~k~~ 210 (266)
T PF04821_consen 160 SDEDSSLHDQLIWALFESGVLDLLLTLASSPQESDFNLLLLEIIYLLFKGQ 210 (266)
T ss_pred cchhHHHHHHHHHHHHHcCHHHHHHHHHhCccccchhhHHHHHHHHHHcCC
Confidence 11 33445566789999999998776 3344445666666665443
No 333
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=22.10 E-value=3e+02 Score=19.62 Aligned_cols=29 Identities=21% Similarity=0.288 Sum_probs=26.4
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 025930 114 GIKALLGMVRCGHPDVLAQVARGIANFAK 142 (246)
Q Consensus 114 ~i~~L~~ll~~~~~~~~~~a~~~L~nL~~ 142 (246)
+++.|+.-|.++++++...|..+|...|.
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~ 37 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACE 37 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 57889999999999999999999999984
No 334
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=21.01 E-value=4.1e+02 Score=20.72 Aligned_cols=72 Identities=14% Similarity=0.088 Sum_probs=43.9
Q ss_pred CCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHH----HhcCCChHHHHHHHHHHHHhh-CCc
Q 025930 29 GGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTT----AANAEDPQTLRMVAGAIANLC-GND 103 (246)
Q Consensus 29 g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~l----l~~~~~~~~~~~a~~aL~~L~-~~~ 103 (246)
...+.+..+++++ ++-.++.++..+...... +..+.++.. +.+ ++..++....++|+.++ .++
T Consensus 120 ~~~~~~~~W~~s~-~~w~rR~~~v~~~~~~~~----------~~~~~~l~~~~~~~~d-~~~~vq~ai~w~L~~~~~~~~ 187 (213)
T PF08713_consen 120 EALELLEKWAKSD-NEWVRRAAIVMLLRYIRK----------EDFDELLEIIEALLKD-EEYYVQKAIGWALREIGKKDP 187 (213)
T ss_dssp GHHHHHHHHHHCS-SHHHHHHHHHCTTTHGGG----------CHHHHHHHHHHHCTTG-S-HHHHHHHHHHHHHHCTT-H
T ss_pred HHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHh----------cCHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHhCH
Confidence 4566777888775 777777766555444333 223333333 333 46778989999999998 666
Q ss_pred hhHHHHHhc
Q 025930 104 KLQLKLRGE 112 (246)
Q Consensus 104 ~~~~~l~~~ 112 (246)
+-....++.
T Consensus 188 ~~v~~~l~~ 196 (213)
T PF08713_consen 188 DEVLEFLQK 196 (213)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 665555543
No 335
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=20.91 E-value=3.4e+02 Score=19.80 Aligned_cols=69 Identities=13% Similarity=0.161 Sum_probs=47.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCC-ChHHHHHcccCC--------ChhHHHHHHH
Q 025930 115 IKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDG-ALPWIVQNSNNE--------ASPIRRHIEL 185 (246)
Q Consensus 115 i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g-~i~~Lv~ll~~~--------~~~v~~~a~~ 185 (246)
+.-|.+-|.+.++.++.+++.+|-.||.. +.++++..+.++- .|..+.+.-... +..||..|-.
T Consensus 40 ~d~L~kRL~~~~~hVK~K~Lrilk~l~~~-------G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~E 112 (122)
T cd03572 40 LEYLLKRLKRSSPHVKLKVLKIIKHLCEK-------GNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQE 112 (122)
T ss_pred HHHHHHHhcCCCCcchHHHHHHHHHHHhh-------CCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHH
Confidence 55678888888899999999999999964 6677777777542 344444444322 3457777766
Q ss_pred HHHHh
Q 025930 186 ALCHL 190 (246)
Q Consensus 186 aL~~L 190 (246)
++..+
T Consensus 113 l~~~i 117 (122)
T cd03572 113 LIKAI 117 (122)
T ss_pred HHHHH
Confidence 66554
No 336
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=20.78 E-value=7.1e+02 Score=24.17 Aligned_cols=57 Identities=11% Similarity=0.024 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhcc
Q 025930 129 VLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQ 192 (246)
Q Consensus 129 ~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~ 192 (246)
+.....++|..++.. ...+.++.+.+.+....++.++-++++++...|...|.....
T Consensus 497 ~~~~~~~il~rls~~-------~~~~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d 553 (727)
T PF12726_consen 497 ITDLISQILERLSDF-------DPSHLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFD 553 (727)
T ss_pred HHHHHHHHHHHHhcC-------CHHHHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhc
Confidence 445666777777743 224445555567889999999999999999999999888864
No 337
>PF08711 Med26: TFIIS helical bundle-like domain; InterPro: IPR017923 Transcription factor IIS (TFIIS) is a transcription elongation factor that increases the overall transcription rate of RNA polymerase II by reactivating transcription elongation complexes that have arrested transcription. The three structural domains of TFIIS are conserved from yeast to human. The 80 or so N-terminal residues form a protein interaction domain containing a conserved motif, which has been called the LW motif because of the invariant leucine and tryptophan residues it contains. Although the N-terminal domain is not needed for transcriptional activity, a similar sequence has been identified in other transcription factors and proteins that are predominantly nuclear localized [, ]: MED26 (also known as CRSP70 and ARC70), a subunit of the Mediator complex, which is required for the activity of the enhancer-binding protein Sp1. Elongin A, a subunit of a transcription elongation factor previously known as SIII. It increases the rate of transcription by suppressing transient pausing of the elongation complex. PPP1R10, a nuclear regulatory subunit of protein phosphatase 1 that was previously known as p99, FB19 or PNUTS. PIBP, a small hypothetical protein that could be a phosphoinositide binding protein. IWS1, which is thought to function in both transcription initiation and elongation. The TFIIS N-terminal domain is a compact four-helix bundle. The hydrophobic core residues of helices 2, 3, and 4 are well conserved among TFIIS domains, although helix 1 is less conserved []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0005634 nucleus; PDB: 1EO0_A 3OAK_A 3NFQ_B 3O8Z_A 1WJT_A 2XPL_A 2XPO_A 2XPP_A 2XPN_A.
Probab=20.10 E-value=2.1e+02 Score=17.01 Aligned_cols=44 Identities=18% Similarity=0.240 Sum_probs=28.0
Q ss_pred HHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHc
Q 025930 187 LCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLT 230 (246)
Q Consensus 187 L~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~ 230 (246)
|..|..-+-..+.+.+.|.-..+-.+-+..+++.++..|...+.
T Consensus 3 L~~L~~l~it~~~L~~T~IGk~V~~l~k~~~~~~i~~~A~~Li~ 46 (53)
T PF08711_consen 3 LKVLEKLPITVELLKSTGIGKAVNKLRKHSENPEIRKLAKELIK 46 (53)
T ss_dssp HHHHHCSS-SHHHHHHHSHHHHHHHHHHCTS-HHHHHHHHHHHH
T ss_pred HHHhhcCCCCHHHHHhCChhHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 44454444456666677776666666665488888898887764
Done!