Query 025930
Match_columns 246
No_of_seqs 115 out of 1168
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 20:53:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025930.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025930hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nmw_A APC variant protein; AR 100.0 4.6E-30 1.6E-34 221.7 17.8 226 6-238 102-338 (354)
2 3nmw_A APC variant protein; AR 100.0 3.2E-29 1.1E-33 216.4 20.8 231 4-244 48-306 (354)
3 3nmz_A APC variant protein; pr 100.0 2.7E-28 9.1E-33 216.8 20.6 231 4-244 164-422 (458)
4 3nmz_A APC variant protein; pr 100.0 1.7E-28 5.9E-33 218.0 19.2 222 5-233 217-449 (458)
5 4hxt_A De novo protein OR329; 100.0 6.7E-27 2.3E-31 191.2 22.9 218 6-234 20-241 (252)
6 4db8_A Armadillo-repeat protei 100.0 5.6E-27 1.9E-31 192.4 21.9 216 7-233 31-250 (252)
7 4db6_A Armadillo repeat protei 99.9 1.8E-25 6.2E-30 178.6 21.8 195 27-232 10-207 (210)
8 1xm9_A Plakophilin 1; armadill 99.9 7.6E-25 2.6E-29 195.5 24.7 223 6-240 20-369 (457)
9 1xm9_A Plakophilin 1; armadill 99.9 3.5E-25 1.2E-29 197.7 21.5 220 6-233 62-405 (457)
10 3now_A UNC-45 protein, SD10334 99.9 1.4E-25 4.7E-30 210.2 19.3 227 6-235 397-695 (810)
11 3ul1_B Importin subunit alpha- 99.9 1E-24 3.4E-29 197.2 24.1 218 5-232 118-385 (510)
12 3tt9_A Plakophilin-2; cell adh 99.9 1.5E-25 5.3E-30 182.0 16.0 191 30-232 9-227 (233)
13 3tpo_A Importin subunit alpha- 99.9 1.8E-24 6.3E-29 196.2 24.8 217 6-232 138-404 (529)
14 3l6x_A Catenin delta-1; cateni 99.9 2.4E-25 8.2E-30 202.3 18.6 217 6-232 66-336 (584)
15 3ul1_B Importin subunit alpha- 99.9 8.1E-25 2.8E-29 197.8 21.1 207 22-238 93-307 (510)
16 3now_A UNC-45 protein, SD10334 99.9 2.8E-25 9.5E-30 208.1 18.6 218 6-234 513-737 (810)
17 1xqr_A HSPBP1 protein; armadil 99.9 2.6E-24 9E-29 181.3 21.8 216 6-230 58-283 (296)
18 3tt9_A Plakophilin-2; cell adh 99.9 7E-25 2.4E-29 178.1 15.2 178 6-193 28-230 (233)
19 4hxt_A De novo protein OR329; 99.9 6.5E-24 2.2E-28 173.3 20.8 193 29-232 2-197 (252)
20 3tpo_A Importin subunit alpha- 99.9 1.3E-23 4.4E-28 190.6 23.9 211 21-233 111-363 (529)
21 4db6_A Armadillo repeat protei 99.9 1E-23 3.6E-28 168.4 20.2 177 6-192 30-209 (210)
22 4b8j_A Importin subunit alpha- 99.9 7.6E-23 2.6E-27 185.1 21.3 219 6-233 136-357 (528)
23 3l6x_A Catenin delta-1; cateni 99.9 4.5E-23 1.5E-27 187.4 19.5 195 27-233 46-269 (584)
24 4db8_A Armadillo-repeat protei 99.9 2.1E-22 7.3E-27 165.0 21.5 203 28-242 11-221 (252)
25 1xqr_A HSPBP1 protein; armadil 99.9 7.2E-23 2.5E-27 172.5 16.6 192 31-232 30-236 (296)
26 4b8j_A Importin subunit alpha- 99.9 5.7E-22 2E-26 179.3 23.7 218 6-234 92-315 (528)
27 1jdh_A Beta-catenin; beta-cate 99.9 5.4E-22 1.9E-26 178.7 20.5 215 7-231 285-527 (529)
28 1wa5_B Importin alpha subunit; 99.9 1.3E-21 4.4E-26 177.2 22.5 218 6-234 149-370 (530)
29 1jdh_A Beta-catenin; beta-cate 99.9 4.6E-22 1.6E-26 179.1 19.1 216 6-231 35-253 (529)
30 1wa5_B Importin alpha subunit; 99.9 3E-21 1E-25 174.8 24.1 217 7-233 106-327 (530)
31 2jdq_A Importin alpha-1 subuni 99.9 4.7E-21 1.6E-25 169.1 21.3 217 6-233 83-304 (450)
32 2z6h_A Catenin beta-1, beta-ca 99.9 2.6E-21 9E-26 179.3 20.5 216 6-231 32-250 (644)
33 2jdq_A Importin alpha-1 subuni 99.9 1.4E-20 4.8E-25 166.1 21.6 216 7-233 126-346 (450)
34 2z6g_A B-catenin; FULL-length, 99.9 9.6E-21 3.3E-25 179.0 21.7 218 7-234 418-663 (780)
35 2z6h_A Catenin beta-1, beta-ca 99.9 1.8E-20 6.2E-25 173.6 22.3 211 24-243 9-224 (644)
36 2z6g_A B-catenin; FULL-length, 99.8 4.5E-20 1.5E-24 174.5 19.2 216 6-231 168-386 (780)
37 3opb_A SWI5-dependent HO expre 99.8 1.1E-19 3.7E-24 168.2 13.2 204 21-234 449-683 (778)
38 3opb_A SWI5-dependent HO expre 99.8 1E-18 3.5E-23 161.6 14.9 216 7-231 476-725 (778)
39 3grl_A General vesicular trans 99.4 1.6E-11 5.6E-16 111.3 18.9 210 26-245 119-357 (651)
40 3grl_A General vesicular trans 99.4 1.5E-11 5.1E-16 111.6 15.9 198 7-216 41-266 (651)
41 4gmo_A Putative uncharacterize 99.4 2.3E-12 7.8E-17 120.2 10.9 193 27-231 32-255 (684)
42 3ltm_A Alpha-REP4; protein eng 99.2 3.7E-10 1.3E-14 89.6 15.6 91 114-234 113-203 (211)
43 3ltm_A Alpha-REP4; protein eng 99.2 1.4E-09 4.7E-14 86.2 18.1 153 27-231 17-169 (211)
44 3ltj_A Alpharep-4; protein eng 99.2 6.7E-10 2.3E-14 87.4 15.8 155 29-235 45-199 (201)
45 3ltj_A Alpharep-4; protein eng 99.2 1.2E-09 4E-14 86.0 15.7 152 28-231 13-164 (201)
46 1oyz_A Hypothetical protein YI 99.1 1.2E-08 4.1E-13 84.3 18.5 115 84-231 103-218 (280)
47 4gmo_A Putative uncharacterize 99.0 1.9E-09 6.5E-14 100.5 12.4 161 72-240 35-224 (684)
48 1oyz_A Hypothetical protein YI 99.0 5.7E-08 2E-12 80.2 20.2 166 25-231 19-185 (280)
49 1b3u_A Protein (protein phosph 98.7 7.4E-07 2.5E-11 80.4 16.6 186 29-232 164-351 (588)
50 4fdd_A Transportin-1; heat rep 98.6 2.3E-07 7.9E-12 88.2 12.8 190 29-235 215-430 (852)
51 1te4_A Conserved protein MTH18 98.5 9.4E-09 3.2E-13 75.5 -0.6 121 27-189 10-130 (131)
52 1b3u_A Protein (protein phosph 98.5 1.1E-06 3.8E-11 79.3 12.8 143 73-232 443-585 (588)
53 2vgl_B AP-2 complex subunit be 98.5 4.4E-07 1.5E-11 83.1 9.2 181 30-231 122-308 (591)
54 4fdd_A Transportin-1; heat rep 98.3 3.3E-06 1.1E-10 80.2 11.4 189 29-231 256-468 (852)
55 2qk2_A LP04448P; mini spindles 98.3 6.4E-06 2.2E-10 66.5 11.2 175 33-231 19-202 (242)
56 1ho8_A Vacuolar ATP synthase s 98.2 3.3E-05 1.1E-09 68.0 15.0 220 8-229 188-471 (480)
57 2vgl_B AP-2 complex subunit be 98.2 5.3E-06 1.8E-10 75.9 10.3 141 29-193 49-190 (591)
58 2qk2_A LP04448P; mini spindles 98.2 3.5E-05 1.2E-09 62.1 13.8 144 30-192 57-205 (242)
59 3dad_A FH1/FH2 domain-containi 98.1 0.00021 7E-09 60.1 17.4 176 31-216 120-317 (339)
60 2db0_A 253AA long hypothetical 98.1 0.00035 1.2E-08 53.8 16.6 156 27-201 30-220 (253)
61 2qk1_A Protein STU2; STU2P, XM 98.1 0.00017 5.7E-09 58.7 15.5 186 34-231 21-217 (249)
62 1te4_A Conserved protein MTH18 98.1 8.8E-06 3E-10 59.3 6.8 88 30-139 43-130 (131)
63 3b2a_A TON_1937, putative unch 98.1 4.9E-05 1.7E-09 60.6 11.2 177 28-230 32-214 (265)
64 1w63_A Adapter-related protein 98.0 0.00019 6.5E-09 65.9 16.7 158 31-215 72-230 (618)
65 1ibr_B P95, importin beta-1 su 98.0 1.5E-05 5E-10 69.7 8.6 186 30-232 218-435 (462)
66 1w63_A Adapter-related protein 98.0 4.6E-05 1.6E-09 70.1 11.6 180 28-235 141-343 (618)
67 1ibr_B P95, importin beta-1 su 97.9 2.7E-05 9.4E-10 67.9 7.7 157 28-193 127-289 (462)
68 3dad_A FH1/FH2 domain-containi 97.8 0.00045 1.5E-08 58.1 13.8 161 15-182 146-326 (339)
69 3b2a_A TON_1937, putative unch 97.8 0.00097 3.3E-08 53.2 14.6 168 6-194 51-220 (265)
70 1qgr_A Protein (importin beta 97.8 0.00036 1.2E-08 65.9 14.1 184 30-231 218-434 (876)
71 1u6g_C TIP120 protein, CAND1; 97.8 0.00021 7.4E-09 70.4 12.7 184 29-230 48-239 (1230)
72 2qk1_A Protein STU2; STU2P, XM 97.7 0.00021 7.2E-09 58.1 10.4 152 30-192 61-220 (249)
73 1ho8_A Vacuolar ATP synthase s 97.7 0.0009 3.1E-08 58.9 14.2 171 11-190 251-474 (480)
74 2bpt_A Importin beta-1 subunit 97.6 0.00059 2E-08 64.3 13.3 185 30-232 225-438 (861)
75 2bpt_A Importin beta-1 subunit 97.6 0.00045 1.5E-08 65.1 12.1 189 28-231 323-526 (861)
76 4ady_A RPN2, 26S proteasome re 97.6 0.006 2.1E-07 58.2 18.5 169 31-230 474-672 (963)
77 2vgl_A Adaptor protein complex 97.5 0.0053 1.8E-07 56.4 17.4 141 29-192 74-216 (621)
78 3tjz_B Coatomer subunit gamma; 97.4 0.0039 1.3E-07 53.2 13.3 185 31-233 106-315 (355)
79 1u6g_C TIP120 protein, CAND1; 97.3 0.0017 5.9E-08 64.0 12.7 186 31-231 8-201 (1230)
80 2vgl_A Adaptor protein complex 97.3 0.0021 7E-08 59.1 12.3 184 28-230 145-394 (621)
81 1qgr_A Protein (importin beta 97.3 0.0013 4.3E-08 62.2 10.4 189 33-234 94-288 (876)
82 2iw3_A Elongation factor 3A; a 97.0 0.085 2.9E-06 50.8 20.3 197 29-232 95-322 (986)
83 4ady_A RPN2, 26S proteasome re 97.0 0.0059 2E-07 58.3 11.4 94 75-192 581-676 (963)
84 2fv2_A RCD1 required for cell 96.9 0.023 7.8E-07 45.8 12.9 140 54-202 80-234 (268)
85 3tjz_B Coatomer subunit gamma; 96.7 0.11 3.7E-06 44.2 15.9 138 31-194 70-207 (355)
86 2db0_A 253AA long hypothetical 96.7 0.081 2.8E-06 40.8 13.4 162 57-238 14-218 (253)
87 3ebb_A Phospholipase A2-activa 96.2 0.15 5.2E-06 42.4 14.2 189 31-229 105-301 (304)
88 1upk_A MO25 protein; transfera 96.0 0.58 2E-05 39.2 16.2 198 23-230 72-279 (341)
89 4ffb_C Protein STU2; tubulin f 95.9 0.47 1.6E-05 38.4 15.6 179 34-230 14-208 (278)
90 2fv2_A RCD1 required for cell 95.5 0.33 1.1E-05 39.2 12.5 171 7-190 75-266 (268)
91 3eg5_B Protein diaphanous homo 95.5 0.5 1.7E-05 40.6 14.5 154 65-221 104-281 (383)
92 1lrv_A LRV, leucine-rich repea 95.4 0.011 3.7E-07 47.8 3.7 164 42-229 62-241 (244)
93 2iw3_A Elongation factor 3A; a 95.1 1 3.5E-05 43.4 16.7 155 28-190 132-322 (986)
94 2f31_A Diaphanous protein homo 95.0 0.59 2E-05 37.1 12.9 151 69-221 41-215 (233)
95 4ffb_C Protein STU2; tubulin f 94.9 0.32 1.1E-05 39.4 11.3 146 33-192 59-212 (278)
96 4hat_C Exportin-1; heat repeat 94.6 0.46 1.6E-05 46.1 13.1 133 42-192 465-618 (1023)
97 3ebb_A Phospholipase A2-activa 94.2 1.3 4.3E-05 36.8 13.2 136 33-181 151-295 (304)
98 2of3_A ZYG-9; multifunctional 93.9 2.1 7.1E-05 34.7 13.9 171 34-230 51-232 (266)
99 2f31_A Diaphanous protein homo 93.1 2.7 9.1E-05 33.2 13.5 154 27-183 41-219 (233)
100 2of3_A ZYG-9; multifunctional 92.9 1.3 4.5E-05 35.9 11.0 130 43-192 100-236 (266)
101 3c2g_A SYS-1 protein; beta-cat 92.6 3.5 0.00012 35.0 13.2 129 92-230 263-399 (619)
102 3u0r_A Apoptosis inhibitor 5; 92.0 2 6.8E-05 37.9 11.5 126 33-188 33-159 (507)
103 3c2g_A SYS-1 protein; beta-cat 91.8 4.6 0.00016 34.4 13.0 126 54-189 266-400 (619)
104 3l9t_A Putative uncharacterize 91.8 2.1 7.2E-05 34.0 10.6 142 33-202 74-218 (240)
105 2x19_B Importin-13; nuclear tr 90.9 3.8 0.00013 39.0 13.5 132 42-192 461-599 (963)
106 1wa5_C Importin alpha RE-expor 90.5 1.4 4.6E-05 42.3 10.1 134 45-193 376-526 (960)
107 2bnx_A Diaphanous protein homo 90.3 7.8 0.00027 33.1 14.7 150 70-221 46-219 (386)
108 3eg5_B Protein diaphanous homo 89.6 9.1 0.00031 32.7 15.8 155 23-182 104-284 (383)
109 1wa5_C Importin alpha RE-expor 89.2 6 0.0002 37.8 13.4 167 35-215 461-652 (960)
110 1lrv_A LRV, leucine-rich repea 88.8 0.37 1.3E-05 38.7 4.0 128 33-186 78-217 (244)
111 3oc3_A Helicase MOT1, MOT1; re 88.1 1.3 4.4E-05 40.1 7.2 181 29-243 263-450 (800)
112 1upk_A MO25 protein; transfera 86.6 13 0.00045 31.1 14.0 144 43-196 136-287 (341)
113 1lsh_A Lipovitellin (LV-1N, LV 86.6 2.4 8.1E-05 41.3 8.8 150 6-192 417-576 (1056)
114 3m1i_C Exportin-1; heat repeat 86.4 9.2 0.00032 36.9 12.9 136 42-192 465-618 (1049)
115 3m1i_C Exportin-1; heat repeat 85.8 7.3 0.00025 37.7 11.8 174 33-230 20-220 (1049)
116 2x1g_F Cadmus; transport prote 85.2 5 0.00017 38.3 10.2 130 43-192 477-615 (971)
117 2bnx_A Diaphanous protein homo 84.8 17 0.0006 30.9 14.8 152 28-183 46-223 (386)
118 3u0r_A Apoptosis inhibitor 5; 84.4 5.1 0.00017 35.3 8.9 63 30-100 66-128 (507)
119 3gae_A Protein DOA1; UFD3, CDC 82.5 1.9 6.6E-05 34.6 5.2 98 84-192 102-217 (253)
120 2x19_B Importin-13; nuclear tr 82.0 14 0.00048 35.0 11.9 128 42-192 37-175 (963)
121 1lsh_A Lipovitellin (LV-1N, LV 81.4 25 0.00086 34.2 13.5 117 85-229 408-538 (1056)
122 3oc3_A Helicase MOT1, MOT1; re 79.2 0.96 3.3E-05 40.9 2.5 132 28-187 298-431 (800)
123 3ldz_A STAM-1, signal transduc 77.4 3.4 0.00012 29.9 4.7 71 114-191 43-113 (140)
124 3ibv_A Exportin-T; karyopherin 77.3 36 0.0012 32.8 13.0 192 28-230 39-256 (980)
125 4hat_C Exportin-1; heat repeat 77.0 22 0.00076 34.4 11.5 178 31-231 18-221 (1023)
126 3pst_A Protein DOA1; protein d 77.0 16 0.00053 31.7 9.4 99 84-193 274-390 (425)
127 1x5b_A Signal transducing adap 76.7 4.8 0.00016 29.9 5.5 71 114-191 53-124 (163)
128 1mhq_A ADP-ribosylation factor 76.6 6.3 0.00021 28.8 6.0 72 114-192 39-116 (148)
129 3gae_A Protein DOA1; UFD3, CDC 76.2 7.1 0.00024 31.2 6.7 97 41-142 101-217 (253)
130 3vld_A DNA mismatch repair pro 73.9 42 0.0014 29.6 11.3 113 23-141 110-224 (500)
131 3ibv_A Exportin-T; karyopherin 73.9 48 0.0016 31.9 12.9 144 43-191 206-360 (980)
132 3g2s_A C-terminal fragment of 73.1 7.8 0.00027 28.4 5.7 72 114-192 49-126 (149)
133 3l3f_X Protein DOA1, DOA1/UFD3 72.8 12 0.0004 31.8 7.4 98 84-192 211-326 (362)
134 3gjx_A Exportin-1; transport, 72.8 61 0.0021 31.6 13.3 133 43-192 492-644 (1073)
135 3zyq_A Hepatocyte growth facto 72.4 5.3 0.00018 31.4 5.0 67 164-230 46-114 (226)
136 2x1g_F Cadmus; transport prote 72.2 6.8 0.00023 37.4 6.6 126 43-192 20-157 (971)
137 3gjx_A Exportin-1; transport, 71.9 50 0.0017 32.2 12.5 177 29-230 28-232 (1073)
138 2xpp_A IWS1, ECU08_0440; trans 70.9 23 0.0008 25.7 7.7 74 153-229 51-131 (145)
139 3g2s_A C-terminal fragment of 67.8 25 0.00086 25.6 7.5 70 30-100 49-125 (149)
140 1x5b_A Signal transducing adap 67.7 14 0.00048 27.3 6.2 70 30-100 53-124 (163)
141 1juq_A ADP-ribosylation factor 66.5 9 0.00031 28.7 4.9 72 114-192 51-128 (171)
142 3zyq_A Hepatocyte growth facto 65.3 13 0.00045 29.1 5.9 70 30-100 46-117 (226)
143 1mhq_A ADP-ribosylation factor 61.9 12 0.00039 27.4 4.6 67 164-230 39-112 (148)
144 3o2t_A Symplekin; heat repeat, 61.6 75 0.0026 27.0 12.5 106 71-190 63-181 (386)
145 3l9t_A Putative uncharacterize 60.5 61 0.0021 25.6 11.0 100 32-142 106-207 (240)
146 1dvp_A HRS, hepatocyte growth 59.1 18 0.00063 28.0 5.7 69 31-100 44-114 (220)
147 3ldz_A STAM-1, signal transduc 53.6 31 0.001 24.7 5.7 69 30-100 43-113 (140)
148 1dvp_A HRS, hepatocyte growth 53.2 14 0.00048 28.7 4.1 66 164-229 43-110 (220)
149 3l3f_X Protein DOA1, DOA1/UFD3 53.1 69 0.0024 27.0 8.5 109 31-142 200-326 (362)
150 3pst_A Protein DOA1; protein d 52.9 98 0.0033 26.7 9.5 98 42-142 274-389 (425)
151 1juq_A ADP-ribosylation factor 49.8 41 0.0014 25.0 6.0 70 30-100 51-127 (171)
152 3nfq_A Transcription factor IW 48.0 64 0.0022 24.0 6.7 75 153-230 66-147 (170)
153 3qml_C Protein SLS1, nucleotid 46.3 1.2E+02 0.0042 24.9 11.0 127 9-141 49-188 (315)
154 1zoq_C CREB-binding protein, i 42.5 45 0.0015 18.8 4.1 35 205-239 2-36 (47)
155 1elk_A Target of MYB1; superhe 40.4 51 0.0017 24.0 5.2 72 114-192 54-130 (157)
156 1elk_A Target of MYB1; superhe 37.7 81 0.0028 22.9 5.9 70 31-100 55-129 (157)
157 3fga_B Serine/threonine-protei 37.5 1.9E+02 0.0066 24.6 12.8 63 19-82 119-197 (403)
158 3gs3_A Symplekin, LD45768P; he 36.6 1.6E+02 0.0054 23.4 15.0 141 34-190 20-171 (257)
159 3a6p_A Exportin-5; exportin-5, 36.4 3.2E+02 0.011 26.8 15.2 128 42-192 25-162 (1204)
160 1vdy_A Hypothetical protein (R 31.1 1.4E+02 0.0049 21.3 6.2 71 115-192 51-130 (140)
161 3o2t_A Symplekin; heat repeat, 29.7 83 0.0028 26.7 5.4 65 113-190 63-127 (386)
162 3qml_C Protein SLS1, nucleotid 28.5 2.5E+02 0.0084 23.1 11.9 132 46-191 44-188 (315)
163 2xpp_A IWS1, ECU08_0440; trans 27.8 1.7E+02 0.0058 21.0 9.4 90 6-98 38-133 (145)
164 1vdy_A Hypothetical protein (R 26.7 83 0.0028 22.6 4.2 67 164-230 50-126 (140)
165 3qrx_B Melittin; calcium-bindi 21.7 31 0.0011 16.7 0.7 14 27-40 9-22 (26)
No 1
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=4.6e-30 Score=221.72 Aligned_cols=226 Identities=16% Similarity=0.176 Sum_probs=193.7
Q ss_pred hhhhHHhHhhccccc-cHHHHHHh-CCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC--cchHHHHHhcCcHHHHHHHHh
Q 025930 6 LNTISVKSEDIRAQS-NQEKIVEA-GGLTSLLMLLGSSEDETIHRVAAGAIANLAMN--ETNQELIMTQGGIGLLSTTAA 81 (246)
Q Consensus 6 ~~~~~~~~~~~~~~~-~~~~i~~~-g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~--~~~~~~i~~~g~i~~L~~ll~ 81 (246)
.++.+.+.|++..++ +|..+... |.||+|+++|+++ ++.+++.|+++|+||+.+ +++|..+++.|++|.|+.++.
T Consensus 102 ~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~-~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~ 180 (354)
T 3nmw_A 102 RYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSE-SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECAL 180 (354)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCC-CHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHh
Confidence 467889999997765 77777655 5599999999986 888999999999999974 679999999999999999865
Q ss_pred cCCChHHHHHHHHHHHHhhC-CchhHHHHH-hcCCHHHHHHHhcCCCH----HHHHHHHHHHHHhhcccccccccCChhh
Q 025930 82 NAEDPQTLRMVAGAIANLCG-NDKLQLKLR-GEGGIKALLGMVRCGHP----DVLAQVARGIANFAKCESRASTQGTKTG 155 (246)
Q Consensus 82 ~~~~~~~~~~a~~aL~~L~~-~~~~~~~l~-~~g~i~~L~~ll~~~~~----~~~~~a~~~L~nL~~~~~~~~~~~~~~~ 155 (246)
+..++.+++.++++|+||+. +++++..++ ..|+++.|+.+|.++++ ++++.|+++|+||+.+- .++++.
T Consensus 181 ~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~-----a~~~~~ 255 (354)
T 3nmw_A 181 EVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLI-----ATNEDH 255 (354)
T ss_dssp HCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHH-----TTCHHH
T ss_pred cCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhc-----cCCHHH
Confidence 44678899999999999997 778988888 78999999999987654 59999999999999410 035799
Q ss_pred hHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhcc-CchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccChh
Q 025930 156 RSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQ-HEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSSPA 234 (246)
Q Consensus 156 ~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~~ 234 (246)
++.+.+.|++|.|+.+|.+++.++++.|+++|+||+. ++++++.+++.|+++.|+++++++ ++.+++.|.++|.++..
T Consensus 256 ~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~-~~~i~~~A~~aL~nL~~ 334 (354)
T 3nmw_A 256 RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLMA 334 (354)
T ss_dssp HHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCS-SHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999995 888999999999999999999855 45678888888876555
Q ss_pred HHHH
Q 025930 235 FQAE 238 (246)
Q Consensus 235 ~~~e 238 (246)
..++
T Consensus 335 ~~~~ 338 (354)
T 3nmw_A 335 NRPA 338 (354)
T ss_dssp TCCG
T ss_pred CCHH
Confidence 4433
No 2
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=3.2e-29 Score=216.41 Aligned_cols=231 Identities=21% Similarity=0.239 Sum_probs=197.3
Q ss_pred ehhhhhHHhHhhccccccHHHHHHhCCHHHHHHHhcCC----------CCHHHHHHHHHHHHHhcCCc-chHHHHHhcCc
Q 025930 4 QILNTISVKSEDIRAQSNQEKIVEAGGLTSLLMLLGSS----------EDETIHRVAAGAIANLAMNE-TNQELIMTQGG 72 (246)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~i~~~g~i~~Li~ll~~~----------~~~~~~~~a~~~L~~la~~~-~~~~~i~~~g~ 72 (246)
|+-++++.+.|++.++++|+.|++.|++++|+.+|... .++.+++.|+++|.||+.++ +++..+.+.+|
T Consensus 48 ~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~G 127 (354)
T 3nmw_A 48 QICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKG 127 (354)
T ss_dssp THHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCC
Confidence 44578999999999999999999999999999999521 23678999999999999875 48888866655
Q ss_pred -HHHHHHHHhcCCChHHHHHHHHHHHHhhC--CchhHHHHHhcCCHHHHHHHh-cCCCHHHHHHHHHHHHHhhccccccc
Q 025930 73 -IGLLSTTAANAEDPQTLRMVAGAIANLCG--NDKLQLKLRGEGGIKALLGMV-RCGHPDVLAQVARGIANFAKCESRAS 148 (246)
Q Consensus 73 -i~~L~~ll~~~~~~~~~~~a~~aL~~L~~--~~~~~~~l~~~g~i~~L~~ll-~~~~~~~~~~a~~~L~nL~~~~~~~~ 148 (246)
+|.|+.++++ +++++++.|+++|+||+. +++++..+++.|++++|+++| +++++++++.++++|+||+.
T Consensus 128 aIp~LV~LL~s-~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~------ 200 (354)
T 3nmw_A 128 CMRALVAQLKS-ESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSA------ 200 (354)
T ss_dssp HHHHHHHGGGC-SCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT------
T ss_pred cHHHHHHHHCC-CCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHc------
Confidence 9999999998 679999999999999995 478999999999999999975 67789999999999999995
Q ss_pred ccCChhhhHHHH-hCCChHHHHHcccCCCh----hHHHHHHHHHHHhcc----CchhHHHHHhCCcHHHHHHHHhcCCHH
Q 025930 149 TQGTKTGRSLLI-DDGALPWIVQNSNNEAS----PIRRHIELALCHLAQ----HEVNAKDMISGGALWELVRISRDCSRE 219 (246)
Q Consensus 149 ~~~~~~~~~~l~-~~g~i~~Lv~ll~~~~~----~v~~~a~~aL~~La~----~~~~~~~i~~~g~i~~L~~ll~~~~~~ 219 (246)
..++++..+. ..|++|.|+.++..+++ ++++.|+++|.+|+. ++++++.++++|+++.|++++++++ .
T Consensus 201 --~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~-~ 277 (354)
T 3nmw_A 201 --HCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHS-L 277 (354)
T ss_dssp --TCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSC-H
T ss_pred --cChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCC-h
Confidence 2467888887 79999999999987755 599999999999985 8889999999999999999999655 4
Q ss_pred HHHHHHHHHHcc----ChhHHHHHHHhhh
Q 025930 220 DIRTLAHRTLTS----SPAFQAEMRRLRI 244 (246)
Q Consensus 220 ~~~~~A~~~L~~----~~~~~~e~~~~~~ 244 (246)
.+++.|.++|.+ .++.+..+.+.|+
T Consensus 278 ~v~~~A~~aL~nLa~~~~~~~~~i~~~G~ 306 (354)
T 3nmw_A 278 TIVSNACGTLWNLSARNPKDQEALWDMGA 306 (354)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHCCC
Confidence 467777777764 5667777766664
No 3
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.96 E-value=2.7e-28 Score=216.79 Aligned_cols=231 Identities=21% Similarity=0.238 Sum_probs=196.5
Q ss_pred ehhhhhHHhHhhccccccHHHHHHhCCHHHHHHHhcC----------CCCHHHHHHHHHHHHHhcCCcc-hHHHHHhcCc
Q 025930 4 QILNTISVKSEDIRAQSNQEKIVEAGGLTSLLMLLGS----------SEDETIHRVAAGAIANLAMNET-NQELIMTQGG 72 (246)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~i~~~g~i~~Li~ll~~----------~~~~~~~~~a~~~L~~la~~~~-~~~~i~~~g~ 72 (246)
|+-++++.+.|++.++++|+.|++.|++++|+.+|.. ..++.+++.|+++|.||+.+++ ++..+.+.+|
T Consensus 164 ~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~G 243 (458)
T 3nmz_A 164 QICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKG 243 (458)
T ss_dssp TTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCC
Confidence 3448899999999999999999999999999999952 1246789999999999998754 6777766555
Q ss_pred -HHHHHHHHhcCCChHHHHHHHHHHHHhhC--CchhHHHHHhcCCHHHHHHHh-cCCCHHHHHHHHHHHHHhhccccccc
Q 025930 73 -IGLLSTTAANAEDPQTLRMVAGAIANLCG--NDKLQLKLRGEGGIKALLGMV-RCGHPDVLAQVARGIANFAKCESRAS 148 (246)
Q Consensus 73 -i~~L~~ll~~~~~~~~~~~a~~aL~~L~~--~~~~~~~l~~~g~i~~L~~ll-~~~~~~~~~~a~~~L~nL~~~~~~~~ 148 (246)
+|.|+.++++ +++++++.|+++|+||+. +++++..+++.|++++|+.+| +++++++++.++++|+||+.
T Consensus 244 aIp~LV~LL~s-~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~------ 316 (458)
T 3nmz_A 244 CMRALVAQLKS-ESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSA------ 316 (458)
T ss_dssp HHHHHHHGGGC-SCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHH------
T ss_pred cHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHcc------
Confidence 9999999997 679999999999999995 478999999999999999975 56788999999999999995
Q ss_pred ccCChhhhHHHH-hCCChHHHHHcccCCCh----hHHHHHHHHHHHhcc----CchhHHHHHhCCcHHHHHHHHhcCCHH
Q 025930 149 TQGTKTGRSLLI-DDGALPWIVQNSNNEAS----PIRRHIELALCHLAQ----HEVNAKDMISGGALWELVRISRDCSRE 219 (246)
Q Consensus 149 ~~~~~~~~~~l~-~~g~i~~Lv~ll~~~~~----~v~~~a~~aL~~La~----~~~~~~~i~~~g~i~~L~~ll~~~~~~ 219 (246)
..++++..+. ..|++|.|+.++..+++ ++++.|+++|.||+. ++++++.++++|+++.|+.++++++.
T Consensus 317 --~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~- 393 (458)
T 3nmz_A 317 --HCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSL- 393 (458)
T ss_dssp --HCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCH-
T ss_pred --CCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCCh-
Confidence 2357788887 79999999999987755 499999999999984 88899999999999999999996554
Q ss_pred HHHHHHHHHHcc----ChhHHHHHHHhhh
Q 025930 220 DIRTLAHRTLTS----SPAFQAEMRRLRI 244 (246)
Q Consensus 220 ~~~~~A~~~L~~----~~~~~~e~~~~~~ 244 (246)
.+++.|.++|.+ .++.+.++.+.|+
T Consensus 394 ~v~~~A~~aL~nLa~~~~~~~~~i~~~G~ 422 (458)
T 3nmz_A 394 TIVSNACGTLWNLSARNPKDQEALWDMGA 422 (458)
T ss_dssp HHHHHHHHHHHHHHSSCHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHCCC
Confidence 467777777764 5777777777664
No 4
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.96 E-value=1.7e-28 Score=217.99 Aligned_cols=222 Identities=16% Similarity=0.174 Sum_probs=191.4
Q ss_pred hhhhhHHhHhhccccc-cHHHHHH-hCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC--cchHHHHHhcCcHHHHHHHH
Q 025930 5 ILNTISVKSEDIRAQS-NQEKIVE-AGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN--ETNQELIMTQGGIGLLSTTA 80 (246)
Q Consensus 5 ~~~~~~~~~~~~~~~~-~~~~i~~-~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~--~~~~~~i~~~g~i~~L~~ll 80 (246)
..++.+.+.|++..++ +|..+.. .|.||+|+++|+++ ++.++..|+++|+||+.+ +++|..+++.|+++.|+.++
T Consensus 217 ~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~-~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lL 295 (458)
T 3nmz_A 217 RRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSE-SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECA 295 (458)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHH
Confidence 3467899999998766 6666655 45599999999986 888999999999999974 67999999999999999986
Q ss_pred hcCCChHHHHHHHHHHHHhhC-CchhHHHHH-hcCCHHHHHHHhcCCCH----HHHHHHHHHHHHhhcccccccccCChh
Q 025930 81 ANAEDPQTLRMVAGAIANLCG-NDKLQLKLR-GEGGIKALLGMVRCGHP----DVLAQVARGIANFAKCESRASTQGTKT 154 (246)
Q Consensus 81 ~~~~~~~~~~~a~~aL~~L~~-~~~~~~~l~-~~g~i~~L~~ll~~~~~----~~~~~a~~~L~nL~~~~~~~~~~~~~~ 154 (246)
.+..++.+++.++++|+||+. +++++..++ ..|+++.|+.+|.++++ ++++.|+++|+||+.+- .++++
T Consensus 296 l~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~-----a~~~~ 370 (458)
T 3nmz_A 296 LEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLI-----ATNED 370 (458)
T ss_dssp TTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHH-----TTCHH
T ss_pred hcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcc-----cCCHH
Confidence 554678899999999999997 888998888 79999999999987654 58999999999999410 03579
Q ss_pred hhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhcc-CchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccCh
Q 025930 155 GRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQ-HEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSSP 233 (246)
Q Consensus 155 ~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~ 233 (246)
.++.+.+.|++|.|+.+|.+++.++++.|+++|+||+. +++++..+++.|+++.|+.++++. +..+++.|.++|.++.
T Consensus 371 ~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~-~~~v~~~Aa~AL~nL~ 449 (458)
T 3nmz_A 371 HRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLM 449 (458)
T ss_dssp HHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCS-SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999995 889999999999999999999854 5567888888887643
No 5
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.96 E-value=6.7e-27 Score=191.15 Aligned_cols=218 Identities=24% Similarity=0.379 Sum_probs=197.8
Q ss_pred hhhhHHhHhhcccc-ccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcC
Q 025930 6 LNTISVKSEDIRAQ-SNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANA 83 (246)
Q Consensus 6 ~~~~~~~~~~~~~~-~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~ 83 (246)
..+++.+.+++... +++..+++.|+++.|+++|+++ ++.++..|+.+|++++.+ ++++..+.+.|+++.|+.++++
T Consensus 20 ~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~- 97 (252)
T 4hxt_A 20 KEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS- 97 (252)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC-
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcC-
Confidence 45678888887655 4999999999999999999996 788999999999999988 8899999999999999999998
Q ss_pred CChHHHHHHHHHHHHhh-CCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhC
Q 025930 84 EDPQTLRMVAGAIANLC-GNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDD 162 (246)
Q Consensus 84 ~~~~~~~~a~~aL~~L~-~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~ 162 (246)
+++.++..++++|.+++ .+++++..+.+.|+++.|+.+++++++.++..++.+|+|++. +.+..++.+.+.
T Consensus 98 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~--------~~~~~~~~~~~~ 169 (252)
T 4hxt_A 98 TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS--------GPDEAIKAIVDA 169 (252)
T ss_dssp SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT--------SCHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc--------CCHHHHHHHHHC
Confidence 67999999999999999 788999999999999999999999999999999999999995 456778899999
Q ss_pred CChHHHHHcccCCChhHHHHHHHHHHHhcc-CchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccChh
Q 025930 163 GALPWIVQNSNNEASPIRRHIELALCHLAQ-HEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSSPA 234 (246)
Q Consensus 163 g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~~ 234 (246)
|+++.|+.++.++++.++..++++|.+|+. +++.++.+.+.|+++.|+++++++ +..++..|.++|.++..
T Consensus 170 ~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 170 GGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTST-DSEVQKEAQRALENIKS 241 (252)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCC-cHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999998 677788999999999999999855 45788999999986543
No 6
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.96 E-value=5.6e-27 Score=192.41 Aligned_cols=216 Identities=22% Similarity=0.301 Sum_probs=193.5
Q ss_pred hhhHHhHh-hccccccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcC-CcchHHHHHhcCcHHHHHHHHhcCC
Q 025930 7 NTISVKSE-DIRAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAM-NETNQELIMTQGGIGLLSTTAANAE 84 (246)
Q Consensus 7 ~~~~~~~~-~~~~~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~-~~~~~~~i~~~g~i~~L~~ll~~~~ 84 (246)
.+++.+.+ ++..++++..+++.|+++.|+++|+++ ++.++..|+.+|++++. +++++..+++.|+++.|+.++++ +
T Consensus 31 ~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~ 108 (252)
T 4db8_A 31 SATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-P 108 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGC-S
T ss_pred HHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcC-C
Confidence 44455533 444778899999999999999999997 78899999999999997 58899999999999999999998 5
Q ss_pred ChHHHHHHHHHHHHhhCCchhH-HHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCC
Q 025930 85 DPQTLRMVAGAIANLCGNDKLQ-LKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDG 163 (246)
Q Consensus 85 ~~~~~~~a~~aL~~L~~~~~~~-~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g 163 (246)
++.++..++++|.|++.+++.+ ..+.+.|+++.|+.++.++++.++..++.+|.||+. ++++.++.+.+.|
T Consensus 109 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~--------~~~~~~~~~~~~~ 180 (252)
T 4db8_A 109 NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS--------GGNEQIQAVIDAG 180 (252)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTT--------SCHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc--------CChHHHHHHHHCC
Confidence 7999999999999999888888 889999999999999999999999999999999995 4578888899999
Q ss_pred ChHHHHHcccCCChhHHHHHHHHHHHhcc-CchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccCh
Q 025930 164 ALPWIVQNSNNEASPIRRHIELALCHLAQ-HEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSSP 233 (246)
Q Consensus 164 ~i~~Lv~ll~~~~~~v~~~a~~aL~~La~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~ 233 (246)
++|.|+.++.++++.++..|+++|.+|+. +++.++.+.+.|+++.|+++++++ +..++..|.++|.++.
T Consensus 181 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 181 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEKLQ 250 (252)
T ss_dssp CHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCS-SSHHHHTHHHHHHTTC
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCC-CHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999986 777888999999999999999854 4567899999998764
No 7
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.94 E-value=1.8e-25 Score=178.62 Aligned_cols=195 Identities=21% Similarity=0.299 Sum_probs=175.5
Q ss_pred HhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcC-CcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh-CCch
Q 025930 27 EAGGLTSLLMLLGSSEDETIHRVAAGAIANLAM-NETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC-GNDK 104 (246)
Q Consensus 27 ~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~-~~~~ 104 (246)
..|+.+.|+.+|+++ ++.++..|+++|.+++. +++.+..+++.|+++.|+.++++ +++.++..|+++|.|++ .+++
T Consensus 10 ~~~~~~~l~~LL~s~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~ 87 (210)
T 4db6_A 10 HGSELPQMVQQLNSP-DQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIASGGNE 87 (210)
T ss_dssp ---CHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCHH
T ss_pred ccchhHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCcH
Confidence 468899999999986 88999999999999994 57889999999999999999998 57999999999999999 6788
Q ss_pred hHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHH
Q 025930 105 LQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIE 184 (246)
Q Consensus 105 ~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~ 184 (246)
++..+++.|+++.|+.+|.++++.++..|+.+|+|++. ++++.++.+.+.|++|.|+.++.+++++++..|+
T Consensus 88 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~--------~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~ 159 (210)
T 4db6_A 88 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS--------GGNEQIQAVIDAGALPALVQLLSSPNEQILQEAL 159 (210)
T ss_dssp HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTT--------SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHc--------CCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHH
Confidence 89999999999999999999999999999999999995 4578888899999999999999999999999999
Q ss_pred HHHHHhccC-chhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccC
Q 025930 185 LALCHLAQH-EVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSS 232 (246)
Q Consensus 185 ~aL~~La~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~ 232 (246)
++|.+|+.+ ++.+..+.+.|+++.|++++.+ ++..+++.|.++|.++
T Consensus 160 ~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~aL~~l 207 (210)
T 4db6_A 160 WALSNIASGGNEQKQAVKEAGALEKLEQLQSH-ENEKIQKEAQEALEKL 207 (210)
T ss_dssp HHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHH
Confidence 999999985 7888999999999999999985 5566788888888654
No 8
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.94 E-value=7.6e-25 Score=195.45 Aligned_cols=223 Identities=18% Similarity=0.242 Sum_probs=181.4
Q ss_pred hhhhHHhHhhccccc-cHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcC
Q 025930 6 LNTISVKSEDIRAQS-NQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANA 83 (246)
Q Consensus 6 ~~~~~~~~~~~~~~~-~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~ 83 (246)
..+++.+.+++..++ ++..+++.|+||+|+++|+++ ++.++..|+++|.||+.+ ++++..|++.|++|.|+.+++..
T Consensus 20 ~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~-~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~ 98 (457)
T 1xm9_A 20 AIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSP-NQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRT 98 (457)
T ss_dssp HHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSS-CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhC
Confidence 467788889886654 577999999999999999985 888999999999999987 89999999999999999999943
Q ss_pred CChHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhc--------C--------CCHHHHHHHHHHHHHhhcccccc
Q 025930 84 EDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVR--------C--------GHPDVLAQVARGIANFAKCESRA 147 (246)
Q Consensus 84 ~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~--------~--------~~~~~~~~a~~~L~nL~~~~~~~ 147 (246)
.++++++.++++|+||+.+++++..+++ |++|+|+.++. + .++++.+.|+++|+|||.
T Consensus 99 ~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~----- 172 (457)
T 1xm9_A 99 GNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSS----- 172 (457)
T ss_dssp CCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTT-----
T ss_pred CCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHcc-----
Confidence 6899999999999999988999999999 99999999993 2 246677899999999994
Q ss_pred cccCChhhhHHHHhC-CChHHHHHcccC----------------------------------------------------
Q 025930 148 STQGTKTGRSLLIDD-GALPWIVQNSNN---------------------------------------------------- 174 (246)
Q Consensus 148 ~~~~~~~~~~~l~~~-g~i~~Lv~ll~~---------------------------------------------------- 174 (246)
.++.++.+.+. |++|.|+.++.+
T Consensus 173 ----~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (457)
T 1xm9_A 173 ----ADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTG 248 (457)
T ss_dssp ----SHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-----------
T ss_pred ----CHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccc
Confidence 37889999887 889988877752
Q ss_pred -----------------------------------------------CChhHHHHHHHHHHHhccCc-h----h-HHHHH
Q 025930 175 -----------------------------------------------EASPIRRHIELALCHLAQHE-V----N-AKDMI 201 (246)
Q Consensus 175 -----------------------------------------------~~~~v~~~a~~aL~~La~~~-~----~-~~~i~ 201 (246)
.++.+++.|+++|+||+... . . +..+.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~ 328 (457)
T 1xm9_A 249 CFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGL 328 (457)
T ss_dssp -----------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHT
T ss_pred hhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHH
Confidence 13567778899999998733 2 2 33444
Q ss_pred hCCcHHHHHHHHhcCCHHHHHHHHHHHHcc---ChhHHHHHH
Q 025930 202 SGGALWELVRISRDCSREDIRTLAHRTLTS---SPAFQAEMR 240 (246)
Q Consensus 202 ~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~---~~~~~~e~~ 240 (246)
+.|+++.|++++.+++. .++..|.++|.+ .+.....+.
T Consensus 329 ~~~~l~~Lv~LL~~~~~-~v~~~A~~aL~nls~~~~~~~~i~ 369 (457)
T 1xm9_A 329 KEKGLPQIARLLQSGNS-DVVRSGASLLSNMSRHPLLHRVMG 369 (457)
T ss_dssp TSCCHHHHHHHTTCSCH-HHHHHHHHHHHHHHTSGGGHHHHH
T ss_pred HcCCchHHHHHHhCCCH-hHHHHHHHHHHHHhcCHHHHHHHH
Confidence 68999999999996655 556667777764 444444443
No 9
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.94 E-value=3.5e-25 Score=197.67 Aligned_cols=220 Identities=18% Similarity=0.236 Sum_probs=177.7
Q ss_pred hhhhHHhHhhccc-cccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHh---
Q 025930 6 LNTISVKSEDIRA-QSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAA--- 81 (246)
Q Consensus 6 ~~~~~~~~~~~~~-~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~--- 81 (246)
..+.+.+.|++.. +++|..|++.|+||+|+++|+...++.+++.|+++|+||+.++++|..+++ |++|.|+.++.
T Consensus 62 ~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~ 140 (457)
T 1xm9_A 62 QAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPF 140 (457)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccc
Confidence 5678999999876 999999999999999999999334888999999999999999999999999 99999999993
Q ss_pred -----cC-------CChHHHHHHHHHHHHhhCCchhHHHHHhc-CCHHHHHHHhcC------C-----------------
Q 025930 82 -----NA-------EDPQTLRMVAGAIANLCGNDKLQLKLRGE-GGIKALLGMVRC------G----------------- 125 (246)
Q Consensus 82 -----~~-------~~~~~~~~a~~aL~~L~~~~~~~~~l~~~-g~i~~L~~ll~~------~----------------- 125 (246)
+. .++.+.+.|+++|+|||.+++++..+.+. |+++.|+.++.+ .
T Consensus 141 s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~ 220 (457)
T 1xm9_A 141 SGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSY 220 (457)
T ss_dssp HTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTT
T ss_pred cccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhccc
Confidence 21 25667779999999999889999999997 999999988863 1
Q ss_pred ----------------------------------------------------------------------------CHHH
Q 025930 126 ----------------------------------------------------------------------------HPDV 129 (246)
Q Consensus 126 ----------------------------------------------------------------------------~~~~ 129 (246)
++.+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~ 300 (457)
T 1xm9_A 221 RLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDAT 300 (457)
T ss_dssp THHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHH
T ss_pred chhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHH
Confidence 2344
Q ss_pred HHHHHHHHHHhhcccccccccCC--hhh-hHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhccCchhHHHHHhCCcH
Q 025930 130 LAQVARGIANFAKCESRASTQGT--KTG-RSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQHEVNAKDMISGGAL 206 (246)
Q Consensus 130 ~~~a~~~L~nL~~~~~~~~~~~~--~~~-~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~g~i 206 (246)
++.|+++|.|++... +. ... +..+.+.|++|.|++++.+++.++++.|+++|.||+.+++++..+. .|++
T Consensus 301 ~e~a~~aL~nl~~~~------~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~-~~~i 373 (457)
T 1xm9_A 301 LEACAGALQNLTASK------GLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMG-NQVF 373 (457)
T ss_dssp HHHHHHHHHHHTTCS------SSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHH-HHTH
T ss_pred HHHHHHHHHHhccCc------CcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHH-Hhhh
Confidence 555666777776421 01 122 3445578999999999999999999999999999999888866554 5899
Q ss_pred HHHHHHHhcCC-----HHHHHHHHHHHHccCh
Q 025930 207 WELVRISRDCS-----REDIRTLAHRTLTSSP 233 (246)
Q Consensus 207 ~~L~~ll~~~~-----~~~~~~~A~~~L~~~~ 233 (246)
+.|++++..++ .+++...+.++|.++.
T Consensus 374 ~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~ 405 (457)
T 1xm9_A 374 PEVTRLLTSHTGNTSNSEDILSSACYTVRNLM 405 (457)
T ss_dssp HHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCCCCCCcHHHHHHHHHHHHHHH
Confidence 99999998653 3566778888776543
No 10
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.94 E-value=1.4e-25 Score=210.19 Aligned_cols=227 Identities=17% Similarity=0.179 Sum_probs=198.7
Q ss_pred hhhhHHhHhhccccccHHHHH-HhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcc----------------------
Q 025930 6 LNTISVKSEDIRAQSNQEKIV-EAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNET---------------------- 62 (246)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~i~-~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~---------------------- 62 (246)
.++++.++.++..++.|..++ +.|++|+|+++|+++ ++.++..|+++|+|++.+++
T Consensus 397 ~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~-d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~ 475 (810)
T 3now_A 397 RWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGG-NQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEE 475 (810)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTT-CGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCS
T ss_pred HHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCC-ChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccc
Confidence 367889999999999999999 479999999999986 78889999999999987531
Q ss_pred --------hH---HHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhcCCCHHHHH
Q 025930 63 --------NQ---ELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLA 131 (246)
Q Consensus 63 --------~~---~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~ 131 (246)
.+ +.+++.|++|.|+.++++ +++.+++.|+++|.|++.+++++..+++.|++|+|+.+++++++..++
T Consensus 476 ~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s-~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~ 554 (810)
T 3now_A 476 HELDDVDFINKRITVLANEGITTALCALAKT-ESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKR 554 (810)
T ss_dssp SCHHHHHHHHHHHHHHHHTTHHHHHHHHHTC-CCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHH
T ss_pred cccccHHHHHHHHHHHHHCcCHHHHHHHHcC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHH
Confidence 23 678899999999999998 579999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccccccc----------c---------------------------cCChhhhHHHHhCCChHHHHHcccC
Q 025930 132 QVARGIANFAKCESRAS----------T---------------------------QGTKTGRSLLIDDGALPWIVQNSNN 174 (246)
Q Consensus 132 ~a~~~L~nL~~~~~~~~----------~---------------------------~~~~~~~~~l~~~g~i~~Lv~ll~~ 174 (246)
.|+++|.||+...+++. . ..+++.++.+++.|++|.|+.++.+
T Consensus 555 ~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s 634 (810)
T 3now_A 555 HATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLME 634 (810)
T ss_dssp HHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHS
T ss_pred HHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcC
Confidence 99999999986422111 0 1236778899999999999999999
Q ss_pred CChhHHHHHHHHHHHhccCchhHHHHHh-CCcHHHHHHHHhcCCHHHHHHHHHHHHccChhH
Q 025930 175 EASPIRRHIELALCHLAQHEVNAKDMIS-GGALWELVRISRDCSREDIRTLAHRTLTSSPAF 235 (246)
Q Consensus 175 ~~~~v~~~a~~aL~~La~~~~~~~~i~~-~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~~~ 235 (246)
+++.+++.|+++|+||+.+++.+..+.+ .|.++.|+.++.+ ++..++..|.++|+++...
T Consensus 635 ~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s-~d~~vq~~Aa~ALanLt~~ 695 (810)
T 3now_A 635 DHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCED-EDEETATACAGALAIITSV 695 (810)
T ss_dssp CCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGC-SSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcC-CCHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999888886 7999999999985 4567888889999987764
No 11
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.94 E-value=1e-24 Score=197.16 Aligned_cols=218 Identities=18% Similarity=0.252 Sum_probs=189.5
Q ss_pred hhhhhHHhHhhc-cccccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhc
Q 025930 5 ILNTISVKSEDI-RAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAAN 82 (246)
Q Consensus 5 ~~~~~~~~~~~~-~~~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~ 82 (246)
+..++|++.|++ .++++++.+++.|+||.|+.+|+++ ++.+++.|+++|+|++.+ ++.|..+.+.|+++.|+.++.+
T Consensus 118 q~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~-~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~ 196 (510)
T 3ul1_B 118 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP-HAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAV 196 (510)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCS
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHh
Confidence 356789999995 5778999999999999999999986 888999999999999987 7789999999999998888753
Q ss_pred C----------------------------------------------CChHHHHHHHHHHHHhhCCc-hhHHHHHhcCCH
Q 025930 83 A----------------------------------------------EDPQTLRMVAGAIANLCGND-KLQLKLRGEGGI 115 (246)
Q Consensus 83 ~----------------------------------------------~~~~~~~~a~~aL~~L~~~~-~~~~~l~~~g~i 115 (246)
. ++++++..++++|.+|+..+ +....+.+.|++
T Consensus 197 ~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i 276 (510)
T 3ul1_B 197 PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVV 276 (510)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCH
T ss_pred ccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccc
Confidence 2 26778889999999999554 455667799999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhcc-Cc
Q 025930 116 KALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQ-HE 194 (246)
Q Consensus 116 ~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~-~~ 194 (246)
+.|+.++.++++.++..++++|+|++. +++..+..+.+.|+++.|+.++.++++.+++.|+++|+||+. ++
T Consensus 277 ~~Lv~lL~~~~~~v~~~al~aL~nl~~--------~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~ 348 (510)
T 3ul1_B 277 PQLVKLLGATELPIVTPALRAIGNIVT--------GTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQ 348 (510)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHTT--------SCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCH
T ss_pred hhhhhhhcCCChhhhhHHHHHHHHhhc--------CCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcH
Confidence 999999999999999999999999985 567889999999999999999999999999999999999987 66
Q ss_pred hhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccC
Q 025930 195 VNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSS 232 (246)
Q Consensus 195 ~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~ 232 (246)
+.+..+.+.|+++.|+.++++++ .+++..|.++|.+.
T Consensus 349 ~~~~~v~~~g~i~~Lv~lL~~~~-~~v~~~Aa~aL~Nl 385 (510)
T 3ul1_B 349 DQIQQVVNHGLVPFLVGVLSKAD-FKTQKEAAWAITNY 385 (510)
T ss_dssp HHHHHHHHTTHHHHHHHHHHSSC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHH
Confidence 77889999999999999999655 55677778888753
No 12
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.93 E-value=1.5e-25 Score=182.00 Aligned_cols=191 Identities=18% Similarity=0.158 Sum_probs=164.5
Q ss_pred CHHHHHHHhcCCCCH--HHHHHHHHHHHHhcC-CcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhC-Cchh
Q 025930 30 GLTSLLMLLGSSEDE--TIHRVAAGAIANLAM-NETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCG-NDKL 105 (246)
Q Consensus 30 ~i~~Li~ll~~~~~~--~~~~~a~~~L~~la~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~-~~~~ 105 (246)
.+|+|+++|+++ ++ .++..|+.+|.+++. +++++..+++.|+||.|+.+|++ +++++++.|+++|.||+. ++++
T Consensus 9 ~i~~lV~lL~s~-~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s-~~~~vq~~Aa~aL~nLa~~~~~n 86 (233)
T 3tt9_A 9 TLERAVSMLEAD-HMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKV-QNEDVQRAVCGALRNLVFEDNDN 86 (233)
T ss_dssp CHHHHHHTCCSS-CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHhCCC-CchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCCHHH
Confidence 489999999997 55 778889999999985 57899999999999999999998 679999999999999995 7899
Q ss_pred HHHHHhcCCHHHHHHHhc-CCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHccc-----------
Q 025930 106 QLKLRGEGGIKALLGMVR-CGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSN----------- 173 (246)
Q Consensus 106 ~~~l~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~----------- 173 (246)
+..+.+.|+||+|+++|+ +++.++++.++++|+||+.+ +++|..+.+. ++|.|++++.
T Consensus 87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~---------~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~ 156 (233)
T 3tt9_A 87 KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN---------DKLKNLMITE-ALLTLTENIIIPFSGWPEGDY 156 (233)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS---------GGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGC
T ss_pred HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC---------hhhHHHHHhc-cHHHHHHHHhccccCCccccc
Confidence 999999999999999998 57899999999999999954 5888888875 6999998763
Q ss_pred -----CCChhHHHHHHHHHHHhcc-CchhHHHHHhC-CcHHHHHHHHhcC-----CHHHHHHHHHHHHccC
Q 025930 174 -----NEASPIRRHIELALCHLAQ-HEVNAKDMISG-GALWELVRISRDC-----SREDIRTLAHRTLTSS 232 (246)
Q Consensus 174 -----~~~~~v~~~a~~aL~~La~-~~~~~~~i~~~-g~i~~L~~ll~~~-----~~~~~~~~A~~~L~~~ 232 (246)
..+++++++|..+|.||+. +++.|+.|+++ |.++.|+.+++.+ .+....+.|..+|.++
T Consensus 157 ~~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nL 227 (233)
T 3tt9_A 157 PKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNL 227 (233)
T ss_dssp CCCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHH
Confidence 1267999999999999988 67999999986 6789999999863 1334567777777653
No 13
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.93 E-value=1.8e-24 Score=196.21 Aligned_cols=217 Identities=18% Similarity=0.260 Sum_probs=188.3
Q ss_pred hhhhHHhHhhcc-ccccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcC
Q 025930 6 LNTISVKSEDIR-AQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANA 83 (246)
Q Consensus 6 ~~~~~~~~~~~~-~~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~ 83 (246)
..++|++.|++. +++++..+++.|+||.|+.+|+++ ++.+++.|+++|+|++.+ +++|..+++.|+++.|+.++...
T Consensus 138 ~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~-~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~ 216 (529)
T 3tpo_A 138 FESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP-HAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVP 216 (529)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhcc
Confidence 457889999975 456778999999999999999996 888999999999999987 78999999999999888776431
Q ss_pred ----------------------------------------------CChHHHHHHHHHHHHhhCC-chhHHHHHhcCCHH
Q 025930 84 ----------------------------------------------EDPQTLRMVAGAIANLCGN-DKLQLKLRGEGGIK 116 (246)
Q Consensus 84 ----------------------------------------------~~~~~~~~a~~aL~~L~~~-~~~~~~l~~~g~i~ 116 (246)
++++++..++++|.+++.. ++....+++.|+++
T Consensus 217 ~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~ 296 (529)
T 3tpo_A 217 DLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVP 296 (529)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHH
T ss_pred chhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchH
Confidence 2677888899999999955 45556678999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhcc-Cch
Q 025930 117 ALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQ-HEV 195 (246)
Q Consensus 117 ~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~-~~~ 195 (246)
.|+.++.++++.++..++++|+|++. +++..+..+.+.|+++.|+.++.++++.+++.|+++|+|++. +++
T Consensus 297 ~Lv~lL~~~~~~v~~~a~~aL~nl~~--------~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~ 368 (529)
T 3tpo_A 297 QLVKLLGATELPIVTPALRAIGNIVT--------GTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQD 368 (529)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHTT--------SCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHhcCCChhHHHHHHHHHHHHHc--------cchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHH
Confidence 99999999999999999999999984 567899999999999999999999999999999999999987 667
Q ss_pred hHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccC
Q 025930 196 NAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSS 232 (246)
Q Consensus 196 ~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~ 232 (246)
.+..+++.|+++.|+.++++++ ..++..|.++|.+.
T Consensus 369 ~~~~v~~~g~i~~Lv~lL~~~~-~~v~~~A~~aL~nl 404 (529)
T 3tpo_A 369 QIQQVVNHGLVPFLVGVLSKAD-FKTQKAAAWAITNY 404 (529)
T ss_dssp HHHHHHHTTHHHHHHHHHHSSC-HHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHhcCCC-HHHHHHHHHHHHHH
Confidence 7888999999999999999655 45677777788653
No 14
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.93 E-value=2.4e-25 Score=202.33 Aligned_cols=217 Identities=16% Similarity=0.192 Sum_probs=181.4
Q ss_pred hhhhHHhHhhcc-ccccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC--cchHHHHHhcCcHHHHHHHHhc
Q 025930 6 LNTISVKSEDIR-AQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN--ETNQELIMTQGGIGLLSTTAAN 82 (246)
Q Consensus 6 ~~~~~~~~~~~~-~~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~--~~~~~~i~~~g~i~~L~~ll~~ 82 (246)
..+++.+.+++. ++++|..|++.|+||+||++|+++ ++.+++.|+++|+||+.+ +++|..|++.|+|+.|+.++++
T Consensus 66 ~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~-~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s 144 (584)
T 3l6x_A 66 SNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHP-KKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRK 144 (584)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCS-SHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCC-CHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcC
Confidence 345678899985 889999999999999999999996 889999999999999984 8899999999999999999998
Q ss_pred CCChHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhc------------------CCCHHHHHHHHHHHHHhhccc
Q 025930 83 AEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVR------------------CGHPDVLAQVARGIANFAKCE 144 (246)
Q Consensus 83 ~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~------------------~~~~~~~~~a~~~L~nL~~~~ 144 (246)
..+.++++.++++|+||+.+++++..+++ +++++|+.++. +.+++++++|+++|+||+.
T Consensus 145 ~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~-- 221 (584)
T 3l6x_A 145 ARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSS-- 221 (584)
T ss_dssp CCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTS--
T ss_pred CCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhc--
Confidence 66788999999999999999999999986 57999999872 2357999999999999995
Q ss_pred ccccccCChhhhHHHHhC-CChHHHHHcccC------CChhHHHHHHHHHHHhccCchh---------------------
Q 025930 145 SRASTQGTKTGRSLLIDD-GALPWIVQNSNN------EASPIRRHIELALCHLAQHEVN--------------------- 196 (246)
Q Consensus 145 ~~~~~~~~~~~~~~l~~~-g~i~~Lv~ll~~------~~~~v~~~a~~aL~~La~~~~~--------------------- 196 (246)
.++++|+.+.+. |+++.|+.+++. .+...++.|+++|+||+...+.
T Consensus 222 ------~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~ 295 (584)
T 3l6x_A 222 ------ERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGT 295 (584)
T ss_dssp ------SCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------
T ss_pred ------CCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccc
Confidence 346789999985 456799999874 4668999999999999875211
Q ss_pred -----HHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccC
Q 025930 197 -----AKDMISGGALWELVRISRDCSREDIRTLAHRTLTSS 232 (246)
Q Consensus 197 -----~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~ 232 (246)
.+.+.+.++++.|+.+++.++...+++.|.++|.+.
T Consensus 296 ~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL 336 (584)
T 3l6x_A 296 SPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNL 336 (584)
T ss_dssp CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred cCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 111122345677899998777788999999999654
No 15
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.93 E-value=8.1e-25 Score=197.78 Aligned_cols=207 Identities=17% Similarity=0.221 Sum_probs=174.5
Q ss_pred HHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh
Q 025930 22 QEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC 100 (246)
Q Consensus 22 ~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~ 100 (246)
.+.++++|+||+||++|++++++.+|..|+++|+|++.+ ++++..+++.|++|.|+.++++ ++..+++.|+++|.|++
T Consensus 93 i~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s-~~~~v~e~A~~aL~nLa 171 (510)
T 3ul1_B 93 IDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLAS-PHAHISEQAVWALGNIA 171 (510)
T ss_dssp HHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHH
Confidence 689999999999999999877899999999999999765 7789999999999999999998 67999999999999999
Q ss_pred C-CchhHHHHHhcCCHHHHHHHhcCCC-----HHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccC
Q 025930 101 G-NDKLQLKLRGEGGIKALLGMVRCGH-----PDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNN 174 (246)
Q Consensus 101 ~-~~~~~~~l~~~g~i~~L~~ll~~~~-----~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~ 174 (246)
. +++++..+.+.|++++|+.++.+++ ..++..++.++.|++.. ...........+++|.|+.++.+
T Consensus 172 ~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~--------~~~~~~~~~~~~~lp~L~~LL~~ 243 (510)
T 3ul1_B 172 GDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRN--------KNPAPPLDAVEQILPTLVRLLHH 243 (510)
T ss_dssp TTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCC--------CSSCCCHHHHHHHHHHHHHHTTC
T ss_pred hCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhc--------ccchhHHHHHHhHHHHHHHHHhc
Confidence 5 5788899999999999999998653 35678999999999953 22333333345789999999999
Q ss_pred CChhHHHHHHHHHHHhccCc-hhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccChhHHHH
Q 025930 175 EASPIRRHIELALCHLAQHE-VNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSSPAFQAE 238 (246)
Q Consensus 175 ~~~~v~~~a~~aL~~La~~~-~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~~~~~e 238 (246)
++++++..++++|.+|+.++ +..+.+.+.|+++.|+.++.++ +..++..|.++|.++....++
T Consensus 244 ~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~al~aL~nl~~~~~~ 307 (510)
T 3ul1_B 244 NDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGNIVTGTDE 307 (510)
T ss_dssp SCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCS-CHHHHHHHHHHHHHHTTSCHH
T ss_pred CCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCC-ChhhhhHHHHHHHHhhcCCHH
Confidence 99999999999999999855 4556777899999999999854 455778888888765433333
No 16
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.93 E-value=2.8e-25 Score=208.14 Aligned_cols=218 Identities=12% Similarity=0.081 Sum_probs=185.7
Q ss_pred hhhhHHhHhhccccccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHH---HhcCcHHHHHHHHhc
Q 025930 6 LNTISVKSEDIRAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELI---MTQGGIGLLSTTAAN 82 (246)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i---~~~g~i~~L~~ll~~ 82 (246)
-+++|++.|++.++++|..++++|++|+|+.+|+++ ++..++.|+++|+|++.+.+....+ ...|++|+|+.++.+
T Consensus 513 e~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~-~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~ 591 (810)
T 3now_A 513 ELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEG-TEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQ 591 (810)
T ss_dssp HHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTST
T ss_pred HHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccC-CHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCC
Confidence 367899999999999999999999999999999997 6778999999999998653333222 124699999999986
Q ss_pred CCChHHHHHHHHHHHHhhCC-chhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHh
Q 025930 83 AEDPQTLRMVAGAIANLCGN-DKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLID 161 (246)
Q Consensus 83 ~~~~~~~~~a~~aL~~L~~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~ 161 (246)
..+...+..|++||.||+.. ++++..+++.|+++.|+.++.++++.+++.|+.+++||+.+ ++.+..+.+
T Consensus 592 ~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~---------~~~~~~~v~ 662 (810)
T 3now_A 592 DCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMS---------EDVIKMFEG 662 (810)
T ss_dssp TSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTS---------HHHHHHHHS
T ss_pred CCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC---------hHHHHHHHh
Confidence 43444556899999999955 68899999999999999999999999999999999999953 567777775
Q ss_pred -CCChHHHHHcccCCChhHHHHHHHHHHHhcc-CchhHHHHHh-CCcHHHHHHHHhcCCHHHHHHHHHHHHccChh
Q 025930 162 -DGALPWIVQNSNNEASPIRRHIELALCHLAQ-HEVNAKDMIS-GGALWELVRISRDCSREDIRTLAHRTLTSSPA 234 (246)
Q Consensus 162 -~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~-~~~~~~~i~~-~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~~ 234 (246)
.|.++.|+.++..++..+++.|+++|.+|+. ++...+.+++ .|+++.|++++.+ ++..++..|.+++.++..
T Consensus 663 ~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s-~d~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 663 NNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIAN-PSPAVQHRGIVIILNMIN 737 (810)
T ss_dssp SSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTC-SSHHHHHHHHHHHHHHHT
T ss_pred ccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCC-CCHHHHHHHHHHHHHHHh
Confidence 7899999999999999999999999999998 7888899998 8999999999995 556677888888865443
No 17
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.93 E-value=2.6e-24 Score=181.32 Aligned_cols=216 Identities=16% Similarity=0.148 Sum_probs=180.4
Q ss_pred hhhhHHhHhhccccccHHHHHHhCCHHHHHH-HhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcC
Q 025930 6 LNTISVKSEDIRAQSNQEKIVEAGGLTSLLM-LLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANA 83 (246)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~i~~~g~i~~Li~-ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~ 83 (246)
..++-.+.++..+.+|...+...|++|+|+. +|+++ ++.++..|+++|++++.+ +..+..+++.|+++.|+.++++.
T Consensus 58 ~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~-~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~ 136 (296)
T 1xqr_A 58 EGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAG-AAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRD 136 (296)
T ss_dssp HHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccC
Confidence 3567788888888899999999999999999 99986 889999999999999876 67899999999999999999975
Q ss_pred CChHHHHHHHHHHHHhh-CCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhC
Q 025930 84 EDPQTLRMVAGAIANLC-GNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDD 162 (246)
Q Consensus 84 ~~~~~~~~a~~aL~~L~-~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~ 162 (246)
++..+++.|++||+|++ .++..++.+.+.|+++.|+.+|+++++.++..|+++|.+++. ++++.++.+.+.
T Consensus 137 ~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~--------~~~~~~~~vv~~ 208 (296)
T 1xqr_A 137 ACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLV--------GHPEHKGTLCSM 208 (296)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH--------HCGGGHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHh--------CChHHHHHHHHc
Confidence 57889999999999999 567777889999999999999999999999999999999995 457899999999
Q ss_pred CChHHHHHcccCCChhHHHHHHHHHHHhccC-chhHHHHHhC-CcH-HH---HHHHHhcCC-HHHHHHHHHHHHc
Q 025930 163 GALPWIVQNSNNEASPIRRHIELALCHLAQH-EVNAKDMISG-GAL-WE---LVRISRDCS-REDIRTLAHRTLT 230 (246)
Q Consensus 163 g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~-~~~~~~i~~~-g~i-~~---L~~ll~~~~-~~~~~~~A~~~L~ 230 (246)
|++|.|+.+|..+++.+++.++.+|.+|+.. +..++.+... ..+ .. -++-++..+ .++..+.|.+++.
T Consensus 209 g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~ 283 (296)
T 1xqr_A 209 GMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQ 283 (296)
T ss_dssp THHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred CCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999885 3333333321 112 11 233344232 4667777877774
No 18
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.93 E-value=7e-25 Score=178.12 Aligned_cols=178 Identities=19% Similarity=0.259 Sum_probs=155.1
Q ss_pred hhhhHHhHhhcc-ccccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcC
Q 025930 6 LNTISVKSEDIR-AQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANA 83 (246)
Q Consensus 6 ~~~~~~~~~~~~-~~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~ 83 (246)
...++.+.+++. ++++|..|++.|+||+|+++|+++ ++.+++.|+++|.||+.+ ++++..|++.|+||.|+.++++.
T Consensus 28 ~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~-~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL~~~ 106 (233)
T 3tt9_A 28 SAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQ-NEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQT 106 (233)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHccC
Confidence 345677888884 678999999999999999999996 889999999999999975 88999999999999999999864
Q ss_pred CChHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhc----------------CCCHHHHHHHHHHHHHhhcccccc
Q 025930 84 EDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVR----------------CGHPDVLAQVARGIANFAKCESRA 147 (246)
Q Consensus 84 ~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~----------------~~~~~~~~~a~~~L~nL~~~~~~~ 147 (246)
.+.+++++++++|+||+..++++..+++. ++++|+.++. +.+++++.+|+++|+||+.
T Consensus 107 ~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss----- 180 (233)
T 3tt9_A 107 RDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSS----- 180 (233)
T ss_dssp CCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTT-----
T ss_pred CCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHHHHHHHHHHHHHHhc-----
Confidence 67899999999999999999999998875 6999988663 1267899999999999995
Q ss_pred cccCChhhhHHHHhC-CChHHHHHcccCC------ChhHHHHHHHHHHHhccC
Q 025930 148 STQGTKTGRSLLIDD-GALPWIVQNSNNE------ASPIRRHIELALCHLAQH 193 (246)
Q Consensus 148 ~~~~~~~~~~~l~~~-g~i~~Lv~ll~~~------~~~v~~~a~~aL~~La~~ 193 (246)
.++++|+.|.+. |.|+.|+.+++.. +...+++|+.+|+||++.
T Consensus 181 ---~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 181 ---AGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp ---SCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred ---CCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 346999999976 5689999999753 568999999999999874
No 19
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.92 E-value=6.5e-24 Score=173.33 Aligned_cols=193 Identities=22% Similarity=0.381 Sum_probs=175.6
Q ss_pred CCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCC-chhH
Q 025930 29 GGLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGN-DKLQ 106 (246)
Q Consensus 29 g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~-~~~~ 106 (246)
|+++.|+++|+++ ++.++..|+.+|.+++.+ ++++..+++.|+++.|+.++++ +++.++..++++|.+++.+ ++++
T Consensus 2 ~~i~~L~~~L~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~ 79 (252)
T 4hxt_A 2 NDVEKLVKLLTST-DSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTS-TDSEVQKEAARALANIASGPDEAI 79 (252)
T ss_dssp CHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred CcHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHHcCChHHH
Confidence 6799999999997 688999999999999877 4599999999999999999998 5799999999999999965 8999
Q ss_pred HHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHH
Q 025930 107 LKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELA 186 (246)
Q Consensus 107 ~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~a 186 (246)
..+.+.|+++.++.++++++++++..++.+|.|++. .+++.+..+.+.|+++.|+.++.++++.++..++++
T Consensus 80 ~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~--------~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~ 151 (252)
T 4hxt_A 80 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS--------GPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARA 151 (252)
T ss_dssp HHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTT--------SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc--------CCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999994 457899999999999999999999999999999999
Q ss_pred HHHhcc-CchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccC
Q 025930 187 LCHLAQ-HEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSS 232 (246)
Q Consensus 187 L~~La~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~ 232 (246)
|++|+. +++.++.+.+.|+++.|+.++.+ +++.++..|.++|.++
T Consensus 152 L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l 197 (252)
T 4hxt_A 152 LANIASGPDEAIKAIVDAGGVEVLVKLLTS-TDSEVQKEAARALANI 197 (252)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHCcCHHHHHHHHCC-CCHHHHHHHHHHHHHH
Confidence 999998 56667889999999999999995 4567888888888753
No 20
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.92 E-value=1.3e-23 Score=190.62 Aligned_cols=211 Identities=18% Similarity=0.289 Sum_probs=178.0
Q ss_pred cHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 025930 21 NQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANL 99 (246)
Q Consensus 21 ~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L 99 (246)
..+.+++.|+||+|+++|+.++++.++..|+++|+|++.+ ++++..+++.|++|.|+.++.+ +++.+++.|+++|.||
T Consensus 111 ~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s-~~~~v~e~A~~aL~nL 189 (529)
T 3tpo_A 111 PIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLAS-PHAHISEQAVWALGNI 189 (529)
T ss_dssp CHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHH
T ss_pred hHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHH
Confidence 3688999999999999998877899999999999999876 5677899999999999999998 6799999999999999
Q ss_pred hC-CchhHHHHHhcCCHHHHHHHhcCCC-----HHHHHHHHHHHHHhhcccccccc------------------------
Q 025930 100 CG-NDKLQLKLRGEGGIKALLGMVRCGH-----PDVLAQVARGIANFAKCESRAST------------------------ 149 (246)
Q Consensus 100 ~~-~~~~~~~l~~~g~i~~L~~ll~~~~-----~~~~~~a~~~L~nL~~~~~~~~~------------------------ 149 (246)
+. +++++..+.+.|++++|+.++..++ ..++..++.++.|++........
T Consensus 190 a~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~ 269 (529)
T 3tpo_A 190 AGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLA 269 (529)
T ss_dssp HTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHH
T ss_pred hccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHH
Confidence 95 6788999999999999999987543 34567777888887764221110
Q ss_pred ----------cCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhcc-CchhHHHHHhCCcHHHHHHHHhcCCH
Q 025930 150 ----------QGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQ-HEVNAKDMISGGALWELVRISRDCSR 218 (246)
Q Consensus 150 ----------~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~-~~~~~~~i~~~g~i~~L~~ll~~~~~ 218 (246)
.+.++..+.+.+.|++|.|+.++.++++.++..++.+|++++. ++..+..+++.|+++.|+.++.+ .+
T Consensus 270 ~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~-~~ 348 (529)
T 3tpo_A 270 DSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN-PK 348 (529)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTC-SS
T ss_pred HHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcC-CC
Confidence 2345667778899999999999999999999999999999987 66778899999999999999985 45
Q ss_pred HHHHHHHHHHHccCh
Q 025930 219 EDIRTLAHRTLTSSP 233 (246)
Q Consensus 219 ~~~~~~A~~~L~~~~ 233 (246)
..++..|.++|.++.
T Consensus 349 ~~i~~~a~~aL~nl~ 363 (529)
T 3tpo_A 349 TNIQKEATWTMSNIT 363 (529)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 667888888887643
No 21
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.92 E-value=1e-23 Score=168.36 Aligned_cols=177 Identities=21% Similarity=0.319 Sum_probs=162.7
Q ss_pred hhhhHHhHhhc-cccccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcC-CcchHHHHHhcCcHHHHHHHHhcC
Q 025930 6 LNTISVKSEDI-RAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAM-NETNQELIMTQGGIGLLSTTAANA 83 (246)
Q Consensus 6 ~~~~~~~~~~~-~~~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~-~~~~~~~i~~~g~i~~L~~ll~~~ 83 (246)
..+++.+.+++ .+++++..+++.|+++.|+++|+++ ++.++..|+++|+|++. +++++..+++.|+++.|+.++++
T Consensus 30 ~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~- 107 (210)
T 4db6_A 30 QSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS- 107 (210)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTC-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcC-
Confidence 46788899998 6788999999999999999999986 88899999999999985 57889999999999999999998
Q ss_pred CChHHHHHHHHHHHHhh-CCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhC
Q 025930 84 EDPQTLRMVAGAIANLC-GNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDD 162 (246)
Q Consensus 84 ~~~~~~~~a~~aL~~L~-~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~ 162 (246)
.++.++..|+++|.|++ .+++.+..+++.|+++.|+.++.++++.++..|+.+|.|++. .+++.+..+.+.
T Consensus 108 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~--------~~~~~~~~~~~~ 179 (210)
T 4db6_A 108 PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS--------GGNEQKQAVKEA 179 (210)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT--------SCHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc--------CCcHHHHHHHHC
Confidence 57999999999999999 566777888999999999999999999999999999999995 447889999999
Q ss_pred CChHHHHHcccCCChhHHHHHHHHHHHhcc
Q 025930 163 GALPWIVQNSNNEASPIRRHIELALCHLAQ 192 (246)
Q Consensus 163 g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~ 192 (246)
|+++.|+.++.++++++++.|+++|.+|+.
T Consensus 180 g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 180 GALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp THHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999986
No 22
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.91 E-value=7.6e-23 Score=185.05 Aligned_cols=219 Identities=16% Similarity=0.243 Sum_probs=192.5
Q ss_pred hhhhHHhHhhccc-cccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcC
Q 025930 6 LNTISVKSEDIRA-QSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANA 83 (246)
Q Consensus 6 ~~~~~~~~~~~~~-~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~ 83 (246)
..+++.+.+++.. ++++..+++.|++++|+.+|+++ ++.++..|+++|++++.+ +..+..+.+.|+++.|+.++.+.
T Consensus 136 ~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~ 214 (528)
T 4b8j_A 136 FEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSS-SDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEH 214 (528)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCC-CHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcC
Confidence 4567888999875 78999999999999999999986 889999999999999877 67899999999999999999655
Q ss_pred CChHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCC
Q 025930 84 EDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDG 163 (246)
Q Consensus 84 ~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g 163 (246)
.++.++..++++|.+|+.+..........|+++.|+.++.+++++++..++.+|.+++. +.++..+.+.+.|
T Consensus 215 ~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~--------~~~~~~~~~~~~g 286 (528)
T 4b8j_A 215 TKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSD--------GTNDKIQAVIEAG 286 (528)
T ss_dssp CCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTS--------SCHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHc--------CCHHHHHHHHHcC
Confidence 78999999999999999664444445568999999999999999999999999999994 4466677888999
Q ss_pred ChHHHHHcccCCChhHHHHHHHHHHHhcc-CchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccCh
Q 025930 164 ALPWIVQNSNNEASPIRRHIELALCHLAQ-HEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSSP 233 (246)
Q Consensus 164 ~i~~Lv~ll~~~~~~v~~~a~~aL~~La~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~ 233 (246)
++|.|+.++.++++.++..|+++|++|+. ++..++.+++.|+++.|+.++.++.+..++..|.++|.++.
T Consensus 287 ~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~ 357 (528)
T 4b8j_A 287 VCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNIT 357 (528)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998 66778889999999999999996646778888999887654
No 23
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.91 E-value=4.5e-23 Score=187.43 Aligned_cols=195 Identities=15% Similarity=0.171 Sum_probs=168.0
Q ss_pred HhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcC-CcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhC--Cc
Q 025930 27 EAGGLTSLLMLLGSSEDETIHRVAAGAIANLAM-NETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCG--ND 103 (246)
Q Consensus 27 ~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~--~~ 103 (246)
..+.||.||++|+++ ++.++..|+.+|.+++. +++++..|++.|+||.|+.+|++ .++.+++.|+++|.||+. ++
T Consensus 46 ~~~~i~~LV~~L~s~-~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s-~~~~vq~~Aa~AL~nLa~~~~~ 123 (584)
T 3l6x_A 46 RQPELPEVIAMLGFR-LDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDH-PKKEVHLGACGALKNISFGRDQ 123 (584)
T ss_dssp CCCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGC-SSHHHHHHHHHHHHHHTSSSCH
T ss_pred ccccHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCC-CCHHHHHHHHHHHHHHHccCCH
Confidence 467899999999986 78899999999999996 68899999999999999999998 579999999999999996 58
Q ss_pred hhHHHHHhcCCHHHHHHHhcC-CCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHccc---------
Q 025930 104 KLQLKLRGEGGIKALLGMVRC-GHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSN--------- 173 (246)
Q Consensus 104 ~~~~~l~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~--------- 173 (246)
+++..+++.|+|++|+.+|++ ++.++++.++.+|+||+.+ ++++..+.+ +++|.|++++.
T Consensus 124 ~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~---------~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~ 193 (584)
T 3l6x_A 124 DNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH---------DSIKMEIVD-HALHALTDEVIIPHSGWERE 193 (584)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS---------GGGHHHHHH-HTHHHHHHHTHHHHHCCC--
T ss_pred HHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC---------chhhHHHHh-ccHHHHHHHHhccccccccc
Confidence 999999999999999999996 6789999999999999954 688999985 57999999871
Q ss_pred ---------CCChhHHHHHHHHHHHhccCc-hhHHHHHhC-CcHHHHHHHHhcC-----CHHHHHHHHHHHHccCh
Q 025930 174 ---------NEASPIRRHIELALCHLAQHE-VNAKDMISG-GALWELVRISRDC-----SREDIRTLAHRTLTSSP 233 (246)
Q Consensus 174 ---------~~~~~v~~~a~~aL~~La~~~-~~~~~i~~~-g~i~~L~~ll~~~-----~~~~~~~~A~~~L~~~~ 233 (246)
..++++++.|+++|.||+.+. +.|+.++++ |+++.|+++++++ .+....+.|..+|.+..
T Consensus 194 ~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs 269 (584)
T 3l6x_A 194 PNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLS 269 (584)
T ss_dssp --------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHH
T ss_pred ccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhh
Confidence 236799999999999999854 569999985 6667999999752 34456677888876633
No 24
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.91 E-value=2.1e-22 Score=164.99 Aligned_cols=203 Identities=19% Similarity=0.255 Sum_probs=176.6
Q ss_pred hCCHHHHHHHhcCCCCHHHHHHHHHHHHHh-cCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhC-Cchh
Q 025930 28 AGGLTSLLMLLGSSEDETIHRVAAGAIANL-AMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCG-NDKL 105 (246)
Q Consensus 28 ~g~i~~Li~ll~~~~~~~~~~~a~~~L~~l-a~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~-~~~~ 105 (246)
....+.++..|+++ ++.++..|+.+|.++ +.+++++..+++.|+++.|+.++++ +++.++..|+++|.+++. ++++
T Consensus 11 ~~~~~~~~~~L~s~-~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~ 88 (252)
T 4db8_A 11 GSELPQMTQQLNSD-DMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQ 88 (252)
T ss_dssp TCSHHHHHHHHHSS-CSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHTTSCHHH
T ss_pred cchHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCHHH
Confidence 34589999999996 778899999999876 4467788999999999999999998 469999999999999995 7899
Q ss_pred HHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhh-HHHHhCCChHHHHHcccCCChhHHHHHH
Q 025930 106 QLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGR-SLLIDDGALPWIVQNSNNEASPIRRHIE 184 (246)
Q Consensus 106 ~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~-~~l~~~g~i~~Lv~ll~~~~~~v~~~a~ 184 (246)
+..+++.|+++.|+.+++++++.++..|+.+|.|++.. ++.+ ..+.+.|++|.|+.++.++++.++..++
T Consensus 89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~---------~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~ 159 (252)
T 4db8_A 89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG---------GNEQIQAVIDAGALPALVQLLSSPNEQILQEAL 159 (252)
T ss_dssp HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS---------CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcC---------CchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHH
Confidence 99999999999999999999999999999999999943 4555 8899999999999999999999999999
Q ss_pred HHHHHhcc-CchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHcc----ChhHHHHHHHh
Q 025930 185 LALCHLAQ-HEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTS----SPAFQAEMRRL 242 (246)
Q Consensus 185 ~aL~~La~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~----~~~~~~e~~~~ 242 (246)
++|++|+. +++.+..+.+.|+++.|++++.++ +..++..|.++|.+ .+.....+.+.
T Consensus 160 ~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 221 (252)
T 4db8_A 160 WALSNIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQKQAVKEA 221 (252)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHC
Confidence 99999998 567778889999999999999855 66778888888875 34444444443
No 25
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.90 E-value=7.2e-23 Score=172.53 Aligned_cols=192 Identities=17% Similarity=0.171 Sum_probs=167.9
Q ss_pred HHHHHHHhcCCC-----------CHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHH-HHhcCCChHHHHHHHHHHHH
Q 025930 31 LTSLLMLLGSSE-----------DETIHRVAAGAIANLAMNETNQELIMTQGGIGLLST-TAANAEDPQTLRMVAGAIAN 98 (246)
Q Consensus 31 i~~Li~ll~~~~-----------~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~-ll~~~~~~~~~~~a~~aL~~ 98 (246)
++..+..|.++. +...+..|+..|.++..+.+++..+.+.|+++.|+. ++.+ +++.+++.|+++|.+
T Consensus 30 mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s-~~~~vr~~Aa~~Lg~ 108 (296)
T 1xqr_A 30 MKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEA-GAAGLRWRAAQLIGT 108 (296)
T ss_dssp HHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTC-SSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcC-CCHHHHHHHHHHHHH
Confidence 567778887641 123466699999999999889999999999999999 9987 689999999999999
Q ss_pred hh-CCchhHHHHHhcCCHHHHHHHhcC-CCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCC
Q 025930 99 LC-GNDKLQLKLRGEGGIKALLGMVRC-GHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEA 176 (246)
Q Consensus 99 L~-~~~~~~~~l~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~ 176 (246)
++ .++.++..+++.|++++|+.+|++ +++.+++.|+++|.|++. +.+...+.+.+.|++|.|+.++++++
T Consensus 109 ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~--------~~~~~~~~~~~~ggi~~L~~lL~~~d 180 (296)
T 1xqr_A 109 CSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVR--------EQEAGLLQFLRLDGFSVLMRAMQQQV 180 (296)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHT--------TCHHHHHHHHHTTHHHHHHHHHHSSC
T ss_pred HHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHc--------CCcHHHHHHHHCCCHHHHHHHHcCCC
Confidence 99 567889999999999999999995 478999999999999994 56788888999999999999999999
Q ss_pred hhHHHHHHHHHHHhcc-CchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccC
Q 025930 177 SPIRRHIELALCHLAQ-HEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSS 232 (246)
Q Consensus 177 ~~v~~~a~~aL~~La~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~ 232 (246)
+.++..|+++|.+|+. +++.+..+++.|+++.|+.++... +..+++.|.++|.++
T Consensus 181 ~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~-d~~v~~~al~aL~~l 236 (296)
T 1xqr_A 181 QKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTE-HSPFHEHVLGALCSL 236 (296)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSC-CSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCC-ChhHHHHHHHHHHHH
Confidence 9999999999999987 678899999999999999999855 456778888888653
No 26
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.90 E-value=5.7e-22 Score=179.28 Aligned_cols=218 Identities=16% Similarity=0.201 Sum_probs=184.7
Q ss_pred hhhhHHhHhhc-ccc-ccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhc
Q 025930 6 LNTISVKSEDI-RAQ-SNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAAN 82 (246)
Q Consensus 6 ~~~~~~~~~~~-~~~-~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~ 82 (246)
..+++.+.++. ... .++..+++.|++|.|+.+|++++++.++..|+++|++++.+ ++++..+++.|+++.|+.++.+
T Consensus 92 ~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~ 171 (528)
T 4b8j_A 92 LEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGS 171 (528)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC
T ss_pred HHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcC
Confidence 34556666663 333 67899999999999999999875589999999999999987 7899999999999999999998
Q ss_pred CCChHHHHHHHHHHHHhh-CCchhHHHHHhcCCHHHHHHHh-cCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHH
Q 025930 83 AEDPQTLRMVAGAIANLC-GNDKLQLKLRGEGGIKALLGMV-RCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLI 160 (246)
Q Consensus 83 ~~~~~~~~~a~~aL~~L~-~~~~~~~~l~~~g~i~~L~~ll-~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~ 160 (246)
+++.++..|+++|.+++ .++.++..+.+.|++++|+.++ .++++.++..++.+|.+|+... .......
T Consensus 172 -~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~---------~~~~~~~ 241 (528)
T 4b8j_A 172 -SSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGK---------PQPSFEQ 241 (528)
T ss_dssp -SCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSS---------SCCCHHH
T ss_pred -CCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCC---------CCCcHHH
Confidence 57999999999999999 5577889999999999999999 5778999999999999999531 2222334
Q ss_pred hCCChHHHHHcccCCChhHHHHHHHHHHHhccCch-hHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccChh
Q 025930 161 DDGALPWIVQNSNNEASPIRRHIELALCHLAQHEV-NAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSSPA 234 (246)
Q Consensus 161 ~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~~-~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~~ 234 (246)
..|++|.|+.++.+++++++..++++|.+|+...+ ..+.+++.|+++.|+.++.+++ ..++..|.++|.++..
T Consensus 242 ~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~-~~v~~~a~~~L~nl~~ 315 (528)
T 4b8j_A 242 TRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPS-PSVLIPALRTVGNIVT 315 (528)
T ss_dssp HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSC-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCC-hhHHHHHHHHHHHHHc
Confidence 48899999999999999999999999999998554 4578889999999999998654 6778889998876443
No 27
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.89 E-value=5.4e-22 Score=178.68 Aligned_cols=215 Identities=20% Similarity=0.225 Sum_probs=184.9
Q ss_pred hhhHHhHhhccc-cccHHHHHHhCCHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCCc-c---hHHHHHhcCcHHHHHHHH
Q 025930 7 NTISVKSEDIRA-QSNQEKIVEAGGLTSLLMLLGSS-EDETIHRVAAGAIANLAMNE-T---NQELIMTQGGIGLLSTTA 80 (246)
Q Consensus 7 ~~~~~~~~~~~~-~~~~~~i~~~g~i~~Li~ll~~~-~~~~~~~~a~~~L~~la~~~-~---~~~~i~~~g~i~~L~~ll 80 (246)
.+.+++.+++.. +++++.+.+.|+++.|+++|.+. +++.++..|+.+|+|++.+. + .+..+.+.|+++.|+.++
T Consensus 285 ~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL 364 (529)
T 1jdh_A 285 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLL 364 (529)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHh
Confidence 467788888775 46999999999999999999863 34788999999999998762 2 577899999999999999
Q ss_pred hcCCChHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhcCCCHHHHH----------------------HHHHHHH
Q 025930 81 ANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLA----------------------QVARGIA 138 (246)
Q Consensus 81 ~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~----------------------~a~~~L~ 138 (246)
.+..++.++..++++|.|++.+++++..+.+.|+++.|+.++.++++++++ .++.+|+
T Consensus 365 ~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~ 444 (529)
T 1jdh_A 365 HPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALH 444 (529)
T ss_dssp STTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHH
Confidence 986556899999999999999888998999999999999999876555554 5556667
Q ss_pred HhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCH
Q 025930 139 NFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSR 218 (246)
Q Consensus 139 nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~ 218 (246)
+|+ .+++.+..+.+.|+++.|+.++.++++.++..++++|.+|+.+++.+..+.+.|+++.|..++. +++
T Consensus 445 ~L~---------~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i~~~~~~~~L~~l~~-~~~ 514 (529)
T 1jdh_A 445 ILA---------RDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLH-SRN 514 (529)
T ss_dssp HHT---------TSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGG-CSS
T ss_pred HHh---------cCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHhc-CCC
Confidence 777 3468889999999999999999999999999999999999998889999999999999999987 556
Q ss_pred HHHHHHHHHHHcc
Q 025930 219 EDIRTLAHRTLTS 231 (246)
Q Consensus 219 ~~~~~~A~~~L~~ 231 (246)
++++..|.++|..
T Consensus 515 ~~v~~~a~~aL~~ 527 (529)
T 1jdh_A 515 EGVATYAAAVLFR 527 (529)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 7788888888854
No 28
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.89 E-value=1.3e-21 Score=177.18 Aligned_cols=218 Identities=15% Similarity=0.198 Sum_probs=191.1
Q ss_pred hhhhHHhHhhccc-cccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcC
Q 025930 6 LNTISVKSEDIRA-QSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANA 83 (246)
Q Consensus 6 ~~~~~~~~~~~~~-~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~ 83 (246)
..+++.+.+++.. ++++..+++.|+++.|+.+|+++ ++.++..|+++|++++.+ ++.+..+.+.|+++.|+.++.+
T Consensus 149 ~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~- 226 (530)
T 1wa5_B 149 LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG-SVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS- 226 (530)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS-
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc-
Confidence 4567888888764 56888899999999999999986 889999999999999987 6789999999999999999998
Q ss_pred CChHHHHHHHHHHHHhhCCc-hhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhC
Q 025930 84 EDPQTLRMVAGAIANLCGND-KLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDD 162 (246)
Q Consensus 84 ~~~~~~~~a~~aL~~L~~~~-~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~ 162 (246)
.+..++..++++|.+|+.+. .........|+++.|+.++.+++++++..++.+|.+|+. +.++..+.+.+.
T Consensus 227 ~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~--------~~~~~~~~~~~~ 298 (530)
T 1wa5_B 227 NKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSD--------GPQEAIQAVIDV 298 (530)
T ss_dssp CCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHS--------SCHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhC--------CCHHHHHHHHhc
Confidence 67899999999999999554 444556678999999999999999999999999999994 446778888999
Q ss_pred CChHHHHHcccCCChhHHHHHHHHHHHhcc-CchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccChh
Q 025930 163 GALPWIVQNSNNEASPIRRHIELALCHLAQ-HEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSSPA 234 (246)
Q Consensus 163 g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~~ 234 (246)
|++|.|+.++.++++.++..|+++|++++. ++...+.+.+.|+++.|+.+++++ +..++..|.++|.++..
T Consensus 299 ~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~ 370 (530)
T 1wa5_B 299 RIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITA 370 (530)
T ss_dssp TCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999997 566778888999999999999865 56788889999976543
No 29
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.89 E-value=4.6e-22 Score=179.14 Aligned_cols=216 Identities=15% Similarity=0.196 Sum_probs=189.1
Q ss_pred hhhhHHhHhhccccccHHHHHHh-CCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCC
Q 025930 6 LNTISVKSEDIRAQSNQEKIVEA-GGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAE 84 (246)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~i~~~-g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~ 84 (246)
.+++..+.+++..++++..++.. |++++|+.+|++++++.++..|+.+|++++.+++++..+.+.|+++.|+.++++ +
T Consensus 35 ~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~-~ 113 (529)
T 1jdh_A 35 NKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGS-P 113 (529)
T ss_dssp HHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTC-S
T ss_pred HHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcC-C
Confidence 35677889999998998888864 899999999987668889999999999999998899999999999999999998 5
Q ss_pred ChHHHHHHHHHHHHhhCC-chhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCC
Q 025930 85 DPQTLRMVAGAIANLCGN-DKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDG 163 (246)
Q Consensus 85 ~~~~~~~a~~aL~~L~~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g 163 (246)
++.++..++++|.+++.+ +..+..+.+.|+++.|+.++++++++++..++.+|.+++. ++++.+..+.+.|
T Consensus 114 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~--------~~~~~~~~i~~~~ 185 (529)
T 1jdh_A 114 VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY--------GNQESKLIILASG 185 (529)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT--------TCHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHh--------CCHHHHHHHHHCC
Confidence 799999999999999954 6677888899999999999999999999999999999994 5679999999999
Q ss_pred ChHHHHHcccCCCh-hHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 025930 164 ALPWIVQNSNNEAS-PIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTS 231 (246)
Q Consensus 164 ~i~~Lv~ll~~~~~-~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~ 231 (246)
+++.|+.+++.+++ ..+..++.+|++|+.+++++..+.+.|+++.|+.++.+++ ..++..|.++|.+
T Consensus 186 ~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~-~~~~~~a~~~L~~ 253 (529)
T 1jdh_A 186 GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS-QRLVQNCLWTLRN 253 (529)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSC-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCC-hHHHHHHHHHHHH
Confidence 99999999987754 5667789999999999999999999999999999998654 4455566666643
No 30
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.89 E-value=3e-21 Score=174.82 Aligned_cols=217 Identities=13% Similarity=0.173 Sum_probs=185.4
Q ss_pred hhhHHhHhhccc--cccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcC
Q 025930 7 NTISVKSEDIRA--QSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANA 83 (246)
Q Consensus 7 ~~~~~~~~~~~~--~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~ 83 (246)
.++..+.++... ..+++.+++.|++|.|+++|++++++.++..|+++|++++.+ ++.+..+++.|+++.|+.++++
T Consensus 106 ~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~- 184 (530)
T 1wa5_B 106 SATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYT- 184 (530)
T ss_dssp HHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHH-
T ss_pred HHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcC-
Confidence 455666666433 456788999999999999999865788999999999999886 6788889999999999999998
Q ss_pred CChHHHHHHHHHHHHhhCC-chhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhC
Q 025930 84 EDPQTLRMVAGAIANLCGN-DKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDD 162 (246)
Q Consensus 84 ~~~~~~~~a~~aL~~L~~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~ 162 (246)
+++.+++.|+++|.+++.+ ++++..+...|+++.|+.++.++++.++..++.+|.+|+.. ...........
T Consensus 185 ~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~--------~~~~~~~~~~~ 256 (530)
T 1wa5_B 185 GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG--------KKPQPDWSVVS 256 (530)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCC--------SSSCCCHHHHG
T ss_pred CCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCC--------CCCCCcHHHHH
Confidence 5799999999999999955 78888899999999999999999999999999999999953 21223344557
Q ss_pred CChHHHHHcccCCChhHHHHHHHHHHHhcc-CchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccCh
Q 025930 163 GALPWIVQNSNNEASPIRRHIELALCHLAQ-HEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSSP 233 (246)
Q Consensus 163 g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~ 233 (246)
+++|.|+.++.++++.++..++++|.+|+. +++.+..+.+.|+++.|+.++.+ .+..++..|.++|.++.
T Consensus 257 ~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~-~~~~v~~~a~~~L~~l~ 327 (530)
T 1wa5_B 257 QALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSH-ESTLVQTPALRAVGNIV 327 (530)
T ss_dssp GGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGC-SCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCC-CChhhHHHHHHHHHHHH
Confidence 899999999999999999999999999997 45677888999999999999985 45677888888887644
No 31
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.88 E-value=4.7e-21 Score=169.11 Aligned_cols=217 Identities=16% Similarity=0.199 Sum_probs=186.0
Q ss_pred hhhhHHhHhhcc-ccccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcC
Q 025930 6 LNTISVKSEDIR-AQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANA 83 (246)
Q Consensus 6 ~~~~~~~~~~~~-~~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~ 83 (246)
..+++++.+++. +++++..+++.|++|.|+++|+++ ++.+++.|+++|++++.+ ++.+..+++.|+++.|+.++.+.
T Consensus 83 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~ 161 (450)
T 2jdq_A 83 FESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSE-FEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQ 161 (450)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCC
Confidence 356778888876 356777888999999999999986 889999999999999987 57888999999999999999965
Q ss_pred CChHHHHHHHHHHHHhhCC--chhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHh
Q 025930 84 EDPQTLRMVAGAIANLCGN--DKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLID 161 (246)
Q Consensus 84 ~~~~~~~~a~~aL~~L~~~--~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~ 161 (246)
.+..++..++++|.+++.+ +.....++ .|+++.|+.++.+++++++..++.+|.+++. ..++.+..+.+
T Consensus 162 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~--------~~~~~~~~~~~ 232 (450)
T 2jdq_A 162 NRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSD--------GPNDKIQAVID 232 (450)
T ss_dssp CCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTS--------SSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHC--------CCcHHHHHHHH
Confidence 6789999999999999954 33333333 7899999999999999999999999999995 34677888889
Q ss_pred CCChHHHHHcccCCChhHHHHHHHHHHHhccC-chhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccCh
Q 025930 162 DGALPWIVQNSNNEASPIRRHIELALCHLAQH-EVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSSP 233 (246)
Q Consensus 162 ~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~ 233 (246)
.|++|.|+.++.+++++++..|+++|.+++.+ +..++.+.+.|+++.|+.++.++ +..++..|.++|.++.
T Consensus 233 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~vr~~a~~~L~~l~ 304 (450)
T 2jdq_A 233 AGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSP-KESIKKEACWTISNIT 304 (450)
T ss_dssp TTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHT
T ss_pred cCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCC-CHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999984 45567788899999999999864 5678888999887644
No 32
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.88 E-value=2.6e-21 Score=179.26 Aligned_cols=216 Identities=15% Similarity=0.199 Sum_probs=190.4
Q ss_pred hhhhHHhHhhccccccHHHHHHh-CCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCC
Q 025930 6 LNTISVKSEDIRAQSNQEKIVEA-GGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAE 84 (246)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~i~~~-g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~ 84 (246)
.+++..+.+++..++++..++.. |+++.|+..|++++++.++..|+.+|.+++.+++++..+.+.|+++.|+.++++ +
T Consensus 32 ~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~-~ 110 (644)
T 2z6h_A 32 NKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGS-P 110 (644)
T ss_dssp HHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTC-S
T ss_pred HHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhC-C
Confidence 35677889999988888888764 899999999998668899999999999999998899999999999999999998 5
Q ss_pred ChHHHHHHHHHHHHhhCC-chhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCC
Q 025930 85 DPQTLRMVAGAIANLCGN-DKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDG 163 (246)
Q Consensus 85 ~~~~~~~a~~aL~~L~~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g 163 (246)
++.++..|+++|.|++.+ +..+..+.+.|+++.|+.+++++++.++..++.+|.+++. ++++.+..+.+.|
T Consensus 111 ~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~--------~~~~~~~~i~~~g 182 (644)
T 2z6h_A 111 VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY--------GNQESKLIILASG 182 (644)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT--------TCHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHh--------cCcHHHHHHHHcC
Confidence 799999999999999954 6677788899999999999999999999999999999994 4579999999999
Q ss_pred ChHHHHHcccCCC-hhHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 025930 164 ALPWIVQNSNNEA-SPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTS 231 (246)
Q Consensus 164 ~i~~Lv~ll~~~~-~~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~ 231 (246)
+++.|+.++...+ ..++..++.+|++|+.+++++..+++.|+++.|+.++.+++ ..++..+.++|.+
T Consensus 183 ~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~-~~~~~~a~~~L~n 250 (644)
T 2z6h_A 183 GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS-QRLVQNCLWTLRN 250 (644)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSC-HHHHHHHHHHHHH
T ss_pred ChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCC-HHHHHHHHHHHHH
Confidence 9999999998774 57888999999999999999999999999999999998554 4556666666654
No 33
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.87 E-value=1.4e-20 Score=166.06 Aligned_cols=216 Identities=14% Similarity=0.179 Sum_probs=185.5
Q ss_pred hhhHHhHhhccc-cccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCc--chHHHHHhcCcHHHHHHHHhcC
Q 025930 7 NTISVKSEDIRA-QSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNE--TNQELIMTQGGIGLLSTTAANA 83 (246)
Q Consensus 7 ~~~~~~~~~~~~-~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~--~~~~~i~~~g~i~~L~~ll~~~ 83 (246)
++++.+.+++.. ++++..+++.|+++.|+.++++..++.+++.|+++|++++.+. ..+..++ .++++.|+.++.+
T Consensus 126 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~- 203 (450)
T 2jdq_A 126 QAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFV- 203 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTC-
T ss_pred HHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHcc-
Confidence 467788888765 4688889999999999999996558889999999999998663 3333333 7899999999997
Q ss_pred CChHHHHHHHHHHHHhhC-CchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhC
Q 025930 84 EDPQTLRMVAGAIANLCG-NDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDD 162 (246)
Q Consensus 84 ~~~~~~~~a~~aL~~L~~-~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~ 162 (246)
+|+.++..++++|.+++. .++....+.+.|+++.|+.++.++++.++..++.+|.+++. +.+..++.+.+.
T Consensus 204 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~--------~~~~~~~~~~~~ 275 (450)
T 2jdq_A 204 SDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVT--------GDDIQTQVILNC 275 (450)
T ss_dssp CCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTT--------SCHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhh--------CChHHHHHHHHC
Confidence 578999999999999995 45777888899999999999999999999999999999995 456777788889
Q ss_pred CChHHHHHcccCCChhHHHHHHHHHHHhcc-CchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccCh
Q 025930 163 GALPWIVQNSNNEASPIRRHIELALCHLAQ-HEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSSP 233 (246)
Q Consensus 163 g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~ 233 (246)
|+++.|+.++.++++.++..|+++|.+++. +++..+.+.+.|+++.|+.++.+++ ..++..|.++|.++.
T Consensus 276 ~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~-~~v~~~a~~~L~~l~ 346 (450)
T 2jdq_A 276 SALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAE-FRTRKEAAWAITNAT 346 (450)
T ss_dssp THHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSC-HHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCC-HHHHHHHHHHHHHHH
Confidence 999999999999999999999999999986 6777888899999999999999654 567888888887653
No 34
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.87 E-value=9.6e-21 Score=179.05 Aligned_cols=218 Identities=19% Similarity=0.236 Sum_probs=188.5
Q ss_pred hhhHHhHhhccc-cccHHHHHHhCCHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCC-cc---hHHHHHhcCcHHHHHHHH
Q 025930 7 NTISVKSEDIRA-QSNQEKIVEAGGLTSLLMLLGSS-EDETIHRVAAGAIANLAMN-ET---NQELIMTQGGIGLLSTTA 80 (246)
Q Consensus 7 ~~~~~~~~~~~~-~~~~~~i~~~g~i~~Li~ll~~~-~~~~~~~~a~~~L~~la~~-~~---~~~~i~~~g~i~~L~~ll 80 (246)
.+++++.+++.. ++++..+++.|+++.|+.+|.+. +.+.++..|+++|+|++.. .+ .+..+.+.|+++.|+.++
T Consensus 418 ~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL 497 (780)
T 2z6g_A 418 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLL 497 (780)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHh
Confidence 467788888765 47899999999999999999873 2347899999999999875 22 367888999999999999
Q ss_pred hcCCChHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhcCCC----------------------HHHHHHHHHHHH
Q 025930 81 ANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGH----------------------PDVLAQVARGIA 138 (246)
Q Consensus 81 ~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~----------------------~~~~~~a~~~L~ 138 (246)
.+..++.+++.++++|.|++..++++..+.+.|+++.|+.++.+++ ++++..++++|+
T Consensus 498 ~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~ 577 (780)
T 2z6g_A 498 HPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALH 577 (780)
T ss_dssp STTCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHH
Confidence 9865568999999999999999999988999999999999997532 456778999999
Q ss_pred HhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCH
Q 025930 139 NFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSR 218 (246)
Q Consensus 139 nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~ 218 (246)
+|+. +++++..+.+.|+++.|+.++.++++.++..++.+|.+|+.+++.+..+.+.|+++.|++++. +.+
T Consensus 578 ~La~---------~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll~-~~~ 647 (780)
T 2z6g_A 578 ILAR---------DIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLH-SRN 647 (780)
T ss_dssp HHTT---------SHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGGG-CSC
T ss_pred HHhc---------ChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHc-CCC
Confidence 9994 468899999999999999999999999999999999999999999999999999999999998 455
Q ss_pred HHHHHHHHHHHccChh
Q 025930 219 EDIRTLAHRTLTSSPA 234 (246)
Q Consensus 219 ~~~~~~A~~~L~~~~~ 234 (246)
..++..|.++|.++..
T Consensus 648 ~~Vr~~A~~aL~~l~~ 663 (780)
T 2z6g_A 648 EGVATYAAAVLFRMSE 663 (780)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHc
Confidence 7788999988876443
No 35
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.87 E-value=1.8e-20 Score=173.62 Aligned_cols=211 Identities=21% Similarity=0.209 Sum_probs=183.9
Q ss_pred HHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhc-CcHHHHHHHHhcCCChHHHHHHHHHHHHhhCC
Q 025930 24 KIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQ-GGIGLLSTTAANAEDPQTLRMVAGAIANLCGN 102 (246)
Q Consensus 24 ~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~-g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~ 102 (246)
..++.|+++.|+.+|+++ ++.++..|+.+|++++.++.++..+++. |+++.|+..+.+.++++++..|+.+|.+|+.+
T Consensus 9 ~~~~~g~i~~Lv~lL~~~-~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~ 87 (644)
T 2z6h_A 9 AELATRAIPELTKLLNDE-DQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH 87 (644)
T ss_dssp ---CTTTHHHHHHHHTCS-CHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS
T ss_pred hhhhhchHHHHHHHHcCC-CHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC
Confidence 446889999999999985 8899999999999999998888888765 88999999999766899999999999999988
Q ss_pred chhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHH
Q 025930 103 DKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRH 182 (246)
Q Consensus 103 ~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~ 182 (246)
++++..+.+.|+++.|+.+++++++.++..|+.+|.|++.. .+..+..+.+.|++|.|+.++.+++++++..
T Consensus 88 ~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~--------~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~ 159 (644)
T 2z6h_A 88 REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLH--------QEGAKMAVRLAGGLQKMVALLNKTNVKFLAI 159 (644)
T ss_dssp HHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH--------STTHHHHHHHTTHHHHHHHGGGCCCHHHHHH
T ss_pred hhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhC--------cchhHHHHHHCCChHHHHHHHCcCCHHHHHH
Confidence 88999999999999999999999999999999999999953 3577888889999999999999999999999
Q ss_pred HHHHHHHhcc-CchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHc---cChhHHHHHHHhh
Q 025930 183 IELALCHLAQ-HEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLT---SSPAFQAEMRRLR 243 (246)
Q Consensus 183 a~~aL~~La~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~---~~~~~~~e~~~~~ 243 (246)
++.+|.+|+. +++++..+.+.|+++.|++++++.+.+..+..+.++|. ..+..+..+-+.|
T Consensus 160 a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g 224 (644)
T 2z6h_A 160 TTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAG 224 (644)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTT
T ss_pred HHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCC
Confidence 9999999997 78899999999999999999998776777777777754 4566666555443
No 36
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.85 E-value=4.5e-20 Score=174.47 Aligned_cols=216 Identities=15% Similarity=0.192 Sum_probs=188.3
Q ss_pred hhhhHHhHhhccccccHHHHHHh-CCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCC
Q 025930 6 LNTISVKSEDIRAQSNQEKIVEA-GGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAE 84 (246)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~i~~~-g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~ 84 (246)
.+++..+.+++..++++..+++. |+++.|+..|++++++.+++.|+.+|.+++.+++++..+.+.|+++.|+.++++ .
T Consensus 168 ~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~-~ 246 (780)
T 2z6g_A 168 NKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGS-P 246 (780)
T ss_dssp HHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTC-S
T ss_pred HHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcC-C
Confidence 35678888999888888888854 899999999987668889999999999999998899999999999999999998 5
Q ss_pred ChHHHHHHHHHHHHhhCC-chhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCC
Q 025930 85 DPQTLRMVAGAIANLCGN-DKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDG 163 (246)
Q Consensus 85 ~~~~~~~a~~aL~~L~~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g 163 (246)
++.++..|+++|.||+.+ +..+..+.+.|+++.|+.++++++..++..++.+|.+++. ++++.+..+.+.|
T Consensus 247 ~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~--------~~~e~~~~i~~~~ 318 (780)
T 2z6g_A 247 VDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY--------GNQESKLIILASG 318 (780)
T ss_dssp CHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT--------TCHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhc--------CChHHHHHHHHcC
Confidence 799999999999999954 6677778899999999999999999999999999999994 5579999999999
Q ss_pred ChHHHHHcccCCCh-hHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 025930 164 ALPWIVQNSNNEAS-PIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTS 231 (246)
Q Consensus 164 ~i~~Lv~ll~~~~~-~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~ 231 (246)
+++.|+.+++..++ ..+..++.+|++|+.+++++..+++.|+++.|+.++++.+. ..+..|.++|.+
T Consensus 319 ~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~-~~~~~a~~~L~~ 386 (780)
T 2z6g_A 319 GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQ-RLVQNCLWTLRN 386 (780)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCH-HHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCch-HHHHHHHHHHHH
Confidence 99999999987765 45667899999999999999999999999999999986544 455555666653
No 37
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.81 E-value=1.1e-19 Score=168.15 Aligned_cols=204 Identities=13% Similarity=0.104 Sum_probs=164.0
Q ss_pred cHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCCh--HHHHHHHHHHHH
Q 025930 21 NQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDP--QTLRMVAGAIAN 98 (246)
Q Consensus 21 ~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~--~~~~~a~~aL~~ 98 (246)
+|..+.+.|++|+|+.+++++ ++.+++.|+++|.|++.++++|..+++.|+++.|+.++.+..+. ..+..|+.||.+
T Consensus 449 ~~~~l~eaGvIp~Lv~Ll~S~-s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALAr 527 (778)
T 3opb_A 449 NEKYILRTELISFLKREMHNL-SPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTR 527 (778)
T ss_dssp HHHHTTTTTHHHHHHHHGGGS-CHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence 678889999999999999986 88899999999999999999999999999999999999986433 278899999999
Q ss_pred hh--CCchhHHHHHh---cCCHHHHHHHhcC-CCH------------HH-HHHHHHHHHHhhcccccccccCC--hhhhH
Q 025930 99 LC--GNDKLQLKLRG---EGGIKALLGMVRC-GHP------------DV-LAQVARGIANFAKCESRASTQGT--KTGRS 157 (246)
Q Consensus 99 L~--~~~~~~~~l~~---~g~i~~L~~ll~~-~~~------------~~-~~~a~~~L~nL~~~~~~~~~~~~--~~~~~ 157 (246)
++ .++.. .+-. .|++++|+.+|.. +.. .+ +..|+.+|.||+..+ ++ ++.|.
T Consensus 528 Llis~np~~--~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~------~n~~E~~r~ 599 (778)
T 3opb_A 528 MLIFTNPGL--IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSE------TSDGEEVCK 599 (778)
T ss_dssp HHHTSCHHH--HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCC------SHHHHHHHH
T ss_pred HHhcCCHHH--HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCC------cccchHHHH
Confidence 98 34433 2211 3899999999983 211 12 679999999999642 11 25688
Q ss_pred HHHhC-CChHHHHHcccCCChhHHHHHHHHHHHhccCchhH-HHHHhCC------cHHHHHHHHhcCCHHHHHHHHHHHH
Q 025930 158 LLIDD-GALPWIVQNSNNEASPIRRHIELALCHLAQHEVNA-KDMISGG------ALWELVRISRDCSREDIRTLAHRTL 229 (246)
Q Consensus 158 ~l~~~-g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~~~~-~~i~~~g------~i~~L~~ll~~~~~~~~~~~A~~~L 229 (246)
.++.. |++|.|..++.++++.+|+.|+++++||+.+++.+ +.+...+ .++.|+.++.. ++...+.+|.++|
T Consensus 600 ~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s-~D~~~r~AAagAL 678 (778)
T 3opb_A 600 HIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQL-SDVESQRAVAAIF 678 (778)
T ss_dssp HHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGC-SCHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcC-CCHHHHHHHHHHH
Confidence 88885 99999999999999999999999999999988875 4554332 37789999974 6666788888999
Q ss_pred ccChh
Q 025930 230 TSSPA 234 (246)
Q Consensus 230 ~~~~~ 234 (246)
++.+.
T Consensus 679 AnLts 683 (778)
T 3opb_A 679 ANIAT 683 (778)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 87654
No 38
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.79 E-value=1e-18 Score=161.62 Aligned_cols=216 Identities=10% Similarity=0.088 Sum_probs=170.5
Q ss_pred hhhHHhHhhccccccHHHHHHhCCHHHHHHHhcCCCCHH--HHHHHHHHHHHhcCCcchHHHHHh---cCcHHHHHHHHh
Q 025930 7 NTISVKSEDIRAQSNQEKIVEAGGLTSLLMLLGSSEDET--IHRVAAGAIANLAMNETNQELIMT---QGGIGLLSTTAA 81 (246)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~i~~~g~i~~Li~ll~~~~~~~--~~~~a~~~L~~la~~~~~~~~i~~---~g~i~~L~~ll~ 81 (246)
.+++++.+++.++++|..++++|++++|+.++.++.+.. .+..|+.+|++++...+....+.. .|++++|+.++.
T Consensus 476 ~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~ 555 (778)
T 3opb_A 476 QVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLP 555 (778)
T ss_dssp HHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSC
T ss_pred HHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcC
Confidence 577899999999999999999999999999999874331 688999999999866544444421 489999999998
Q ss_pred cCCCh------------HH-HHHHHHHHHHhhCCc-----hhHHHHHhc-CCHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 025930 82 NAEDP------------QT-LRMVAGAIANLCGND-----KLQLKLRGE-GGIKALLGMVRCGHPDVLAQVARGIANFAK 142 (246)
Q Consensus 82 ~~~~~------------~~-~~~a~~aL~~L~~~~-----~~~~~l~~~-g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~ 142 (246)
..++. .+ ...|+.||.||+..+ +.+..++.. |+++.+..++.+++..+++.|+.+++||+.
T Consensus 556 ~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~ 635 (778)
T 3opb_A 556 RSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMS 635 (778)
T ss_dssp CSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHT
T ss_pred CCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 31111 12 558999999999654 457878885 999999999999999999999999999995
Q ss_pred ccccccccCChhhh-HHHHhC------CChHHHHHcccCCChhHHHHHHHHHHHhc-cCchhHHHHHhC-CcHHHHHHHH
Q 025930 143 CESRASTQGTKTGR-SLLIDD------GALPWIVQNSNNEASPIRRHIELALCHLA-QHEVNAKDMISG-GALWELVRIS 213 (246)
Q Consensus 143 ~~~~~~~~~~~~~~-~~l~~~------g~i~~Lv~ll~~~~~~v~~~a~~aL~~La-~~~~~~~~i~~~-g~i~~L~~ll 213 (246)
+ ++.+ +.+.+. +.++.|+.++..++.++|+.|+++|.+++ .++...+.+.+. +++..++.++
T Consensus 636 ~---------~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL 706 (778)
T 3opb_A 636 H---------PLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVF 706 (778)
T ss_dssp S---------GGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHH
T ss_pred C---------cHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHH
Confidence 4 3443 233322 23789999999999999999999999996 588888888887 8999999999
Q ss_pred hcC-CHHHHHHHHHHHHcc
Q 025930 214 RDC-SREDIRTLAHRTLTS 231 (246)
Q Consensus 214 ~~~-~~~~~~~~A~~~L~~ 231 (246)
++. ++++++..+.-++.+
T Consensus 707 ~~~~~~~~l~~R~~~~l~N 725 (778)
T 3opb_A 707 ADQIDDIELRQRLLMLFFG 725 (778)
T ss_dssp HHTTTCHHHHHHHHHHHHH
T ss_pred hccCCCHHHHHHHHHHHHH
Confidence 972 555566666655544
No 39
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.40 E-value=1.6e-11 Score=111.28 Aligned_cols=210 Identities=16% Similarity=0.107 Sum_probs=165.2
Q ss_pred HHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC--cchHHHHHhc-CcHHHHHHHHhcCCChHHHHHHHHHHHHhh-C
Q 025930 26 VEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN--ETNQELIMTQ-GGIGLLSTTAANAEDPQTLRMVAGAIANLC-G 101 (246)
Q Consensus 26 ~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~--~~~~~~i~~~-g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~-~ 101 (246)
.+.+.|+.|+++|++. +-.++..++..|..|+.+ +..++.|... +|++.|+.++.+ +.+.++..++..|.+|+ .
T Consensus 119 ~~~~~i~~Ll~lL~~~-df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d-~rE~iRneallLL~~Lt~~ 196 (651)
T 3grl_A 119 KQQENVTLLLSLLEEF-DFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLAD-SREVIRNDGVLLLQALTRS 196 (651)
T ss_dssp HSTHHHHHHHHHTTCC-CHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGC-SSHHHHHHHHHHHHHHHTT
T ss_pred cCCccHHHHHHHhcCc-cHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhC-chHHHHHHHHHHHHHHhcC
Confidence 3578899999999885 888888999999999766 3478888854 999999999998 46888999999999999 5
Q ss_pred CchhHHHHHhcCCHHHHHHHhcCCC----HHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCCh
Q 025930 102 NDKLQLKLRGEGGIKALLGMVRCGH----PDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEAS 177 (246)
Q Consensus 102 ~~~~~~~l~~~g~i~~L~~ll~~~~----~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~ 177 (246)
+++.++.+.-+|+++.|+.++..+. ..+..-|+.++.||.. .++.++..+.+.|++|.|..++..+.+
T Consensus 197 n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr--------~N~sNQ~~FrEt~~i~~L~~LL~~~~~ 268 (651)
T 3grl_A 197 NGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLK--------NNNSNQNFFKEGSYIQRMKPWFEVGDE 268 (651)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHT--------TCHHHHHHHHHTTCGGGGGGGGCCCSC
T ss_pred CHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHh--------cCHHHHHHHHHcCCHHHHHHHhCCCcc
Confidence 6677777777899999999998543 3678899999999994 667899999999999999999865422
Q ss_pred ------hHHHH---HHHHHHHhccC-------chhHHHHHhCCcHHHHHHHHhcC-CHHHHHHHHHHHHc----cChhHH
Q 025930 178 ------PIRRH---IELALCHLAQH-------EVNAKDMISGGALWELVRISRDC-SREDIRTLAHRTLT----SSPAFQ 236 (246)
Q Consensus 178 ------~v~~~---a~~aL~~La~~-------~~~~~~i~~~g~i~~L~~ll~~~-~~~~~~~~A~~~L~----~~~~~~ 236 (246)
+.-.+ ++.++.-|... +.+.+.+.++|+++.|++++..+ -+..++..|..+++ .++..+
T Consensus 269 ~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q 348 (651)
T 3grl_A 269 NSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQ 348 (651)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 22233 34555555442 24678889999999999999854 35666666666554 688999
Q ss_pred HHHHHhhhc
Q 025930 237 AEMRRLRID 245 (246)
Q Consensus 237 ~e~~~~~~~ 245 (246)
+++.++.+.
T Consensus 349 ~~fa~~~vp 357 (651)
T 3grl_A 349 DYFASVNAP 357 (651)
T ss_dssp HHHHHCEES
T ss_pred HHHhhccCC
Confidence 988876543
No 40
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.36 E-value=1.5e-11 Score=111.57 Aligned_cols=198 Identities=13% Similarity=0.095 Sum_probs=160.8
Q ss_pred hhhHHhHhhccccccHHHHHHhCCHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCC-cc-----------------hHHHH
Q 025930 7 NTISVKSEDIRAQSNQEKIVEAGGLTSLLMLLGSS-EDETIHRVAAGAIANLAMN-ET-----------------NQELI 67 (246)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~i~~~g~i~~Li~ll~~~-~~~~~~~~a~~~L~~la~~-~~-----------------~~~~i 67 (246)
.++..++.++ .+++.. +.+++++.|++.|+.. +|+++.+.+..+|.++... ++ +.+.+
T Consensus 41 ~Av~~Lk~~s--k~y~~~-Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f 117 (651)
T 3grl_A 41 NAVRALKSLS--KKYRLE-VGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIF 117 (651)
T ss_dssp HHHHHHHHTT--TTTTTH-HHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHH
T ss_pred HHHHHHHHHH--HHhHHH-hhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHH
Confidence 4455666664 455444 4578899999999885 5777888899999887433 21 11233
Q ss_pred -HhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh-CCch-hHHHHHh-cCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcc
Q 025930 68 -MTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC-GNDK-LQLKLRG-EGGIKALLGMVRCGHPDVLAQVARGIANFAKC 143 (246)
Q Consensus 68 -~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~-~~~~-~~~~l~~-~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~ 143 (246)
.+.++++.|+.++.+ +|..++-+++..|..|+ .+++ +++.+.. .++++.|+.+|+++.+.++..++..|.+|+.
T Consensus 118 ~~~~~~i~~Ll~lL~~-~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~- 195 (651)
T 3grl_A 118 IKQQENVTLLLSLLEE-FDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTR- 195 (651)
T ss_dssp HHSTHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHT-
T ss_pred HcCCccHHHHHHHhcC-ccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhc-
Confidence 357889999999987 68999999999999999 4444 7888885 4999999999999999999999999999994
Q ss_pred cccccccCChhhhHHHHhCCChHHHHHcccCCCh----hHHHHHHHHHHHhcc-CchhHHHHHhCCcHHHHHHHHhcC
Q 025930 144 ESRASTQGTKTGRSLLIDDGALPWIVQNSNNEAS----PIRRHIELALCHLAQ-HEVNAKDMISGGALWELVRISRDC 216 (246)
Q Consensus 144 ~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~----~v~~~a~~aL~~La~-~~~~~~~i~~~g~i~~L~~ll~~~ 216 (246)
++.+.++.+.-+|+++.|+.++..+.. .+...|+.+|.+|.. |+.+..-|.+.|+++.|..++...
T Consensus 196 -------~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~ 266 (651)
T 3grl_A 196 -------SNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVG 266 (651)
T ss_dssp -------TCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCC
T ss_pred -------CCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCC
Confidence 667888888889999999999977644 788999999999987 777999999999999999999743
No 41
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.36 E-value=2.3e-12 Score=120.16 Aligned_cols=193 Identities=13% Similarity=0.111 Sum_probs=147.5
Q ss_pred HhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHH-HHhcCCChHHHHHHHHHHHHhh--CCc
Q 025930 27 EAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLST-TAANAEDPQTLRMVAGAIANLC--GND 103 (246)
Q Consensus 27 ~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~-ll~~~~~~~~~~~a~~aL~~L~--~~~ 103 (246)
..+.|.|+++.|+++ ++..|..||.+|.+++.+++.+..+...|+|..++. ++.+ ++.+++..|+++|+||+ ...
T Consensus 32 ~~~~i~Pll~~L~S~-~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D-~~~~Vr~~A~gaLrnL~~~~g~ 109 (684)
T 4gmo_A 32 REDKILPVLKDLKSP-DAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTD-NNIDSRAAGWEILKVLAQEEEA 109 (684)
T ss_dssp HHHTTHHHHHHHSSS-CCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTC-SCHHHHHHHHHHHHHHHHHSCH
T ss_pred chhhHHHHHHHcCCC-CHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCC-CCHHHHHHHHHHHHHHHhhcCc
Confidence 344567788999986 777899999999999999999999999999987664 5665 68999999999999999 456
Q ss_pred hhHHHHHhcCCHHHHHHHhcCCC---------------------HHHHHHHHHHHHHhhcccccccccCChhhhHHHHhC
Q 025930 104 KLQLKLRGEGGIKALLGMVRCGH---------------------PDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDD 162 (246)
Q Consensus 104 ~~~~~l~~~g~i~~L~~ll~~~~---------------------~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~ 162 (246)
+....+++.|++++|..++++.. .++..+++.+|.+||. .+++..+.+.+.
T Consensus 110 d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e--------~s~~~~~~v~~~ 181 (684)
T 4gmo_A 110 DFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLAL--------ARDEIHEAVATK 181 (684)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHH--------HCHHHHHHHHTC
T ss_pred hHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHh--------CCHHHHHHHHhc
Confidence 88899999999999999885310 1244577889999985 446778888889
Q ss_pred CChHHHHHcccCC---ChhHHHHHHHHHHHhcc-CchhHHHHHhCCcHH---HHHHHHhcCCHHHHHHHHHHHHcc
Q 025930 163 GALPWIVQNSNNE---ASPIRRHIELALCHLAQ-HEVNAKDMISGGALW---ELVRISRDCSREDIRTLAHRTLTS 231 (246)
Q Consensus 163 g~i~~Lv~ll~~~---~~~v~~~a~~aL~~La~-~~~~~~~i~~~g~i~---~L~~ll~~~~~~~~~~~A~~~L~~ 231 (246)
+.++.|+.++... ..+++..|+.+|..++. +++..+.+.+.|... .+..+.. .+.. .+.++...|.+
T Consensus 182 ~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~-~~~~-~~~la~giL~N 255 (684)
T 4gmo_A 182 QTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLAT-GTDP-RAVMACGVLHN 255 (684)
T ss_dssp HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHH-SSCT-THHHHHHHHHH
T ss_pred ccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhc-CCcH-HHHHHHHHHHh
Confidence 9999999988433 46899999999999988 566677777766533 2333333 2222 34555666554
No 42
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.23 E-value=3.7e-10 Score=89.57 Aligned_cols=91 Identities=12% Similarity=0.110 Sum_probs=52.8
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhccC
Q 025930 114 GIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQH 193 (246)
Q Consensus 114 ~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~ 193 (246)
.++.|+.++.++++.++..++.+|.++.. ...++.|..++.++++.+|..++.+|..+..
T Consensus 113 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~- 172 (211)
T 3ltm_A 113 AVEPLIKALKDEDWFVRIAAAFALGEIGD-------------------ERAVEPLIKALKDEDGWVRQSAADALGEIGG- 172 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-
Confidence 34555555555555555555555555441 1356666666666666677766666666642
Q ss_pred chhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccChh
Q 025930 194 EVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSSPA 234 (246)
Q Consensus 194 ~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~~ 234 (246)
...++.|..++.++ ++.+|..|.++|..+..
T Consensus 173 ---------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 173 ---------ERVRAAMEKLAETG-TGFARKVAVNYLETHKS 203 (211)
T ss_dssp ---------HHHHHHHHHHHHHC-CHHHHHHHHHHHHC---
T ss_pred ---------hhHHHHHHHHHhCC-CHHHHHHHHHHHHhcCC
Confidence 22566677777644 35577778887766443
No 43
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.22 E-value=1.4e-09 Score=86.23 Aligned_cols=153 Identities=17% Similarity=0.194 Sum_probs=129.3
Q ss_pred HhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhH
Q 025930 27 EAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQ 106 (246)
Q Consensus 27 ~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~ 106 (246)
+.+.++.|+..|+++ ++.++..|+..|+.+... ++++.|+.++.+ +++.++..++.+|..+..
T Consensus 17 ~~~~~~~L~~~L~~~-~~~vR~~A~~~L~~~~~~----------~~~~~L~~~l~~-~~~~vr~~a~~aL~~~~~----- 79 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDD-SYYVRRAAAYALGKIGDE----------RAVEPLIKALKD-EDAWVRRAAADALGQIGD----- 79 (211)
T ss_dssp CGGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCCG----------GGHHHHHHHTTC-SCHHHHHHHHHHHHHHCC-----
T ss_pred CHhHHHHHHHHHcCC-CHHHHHHHHHHHHHhCCc----------cHHHHHHHHHcC-CCHHHHHHHHHHHHhhCC-----
Confidence 356799999999985 899999999999988652 478999999997 589999999999998753
Q ss_pred HHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHH
Q 025930 107 LKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELA 186 (246)
Q Consensus 107 ~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~a 186 (246)
.+.++.|+.++.++++.++..++.+|..+.. .+.++.|+.++.++++.+|..++.+
T Consensus 80 -----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------------------~~~~~~L~~~l~d~~~~vr~~a~~a 135 (211)
T 3ltm_A 80 -----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-------------------ERAVEPLIKALKDEDWFVRIAAAFA 135 (211)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------------------GGGHHHHHHHTTCSSHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------------------HHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3468999999999999999999999999872 2478999999999999999999999
Q ss_pred HHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 025930 187 LCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTS 231 (246)
Q Consensus 187 L~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~ 231 (246)
|..+.. ...++.|..++.+ .+..++..|.++|..
T Consensus 136 L~~~~~----------~~~~~~L~~~l~d-~~~~vr~~a~~aL~~ 169 (211)
T 3ltm_A 136 LGEIGD----------ERAVEPLIKALKD-EDGWVRQSAADALGE 169 (211)
T ss_dssp HHHHCC----------GGGHHHHHHHTTC-SSHHHHHHHHHHHHH
T ss_pred HHHcCC----------HHHHHHHHHHHcC-CCHHHHHHHHHHHHH
Confidence 999854 2378889999974 456788888888864
No 44
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.21 E-value=6.7e-10 Score=87.40 Aligned_cols=155 Identities=15% Similarity=0.168 Sum_probs=102.1
Q ss_pred CCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHH
Q 025930 29 GGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLK 108 (246)
Q Consensus 29 g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~ 108 (246)
+.++.|+..|+++ ++.++..|+.+|+.+... +.++.|+.++.+ +++.++..++++|..+..
T Consensus 45 ~~~~~L~~~l~~~-~~~vr~~a~~~L~~~~~~----------~~~~~L~~~l~d-~~~~vr~~a~~aL~~~~~------- 105 (201)
T 3ltj_A 45 RAVEPLIKALKDE-DAWVRRAAADALGQIGDE----------RAVEPLIKALKD-EDGWVRQSAAVALGQIGD------- 105 (201)
T ss_dssp GGHHHHHHHTTCS-SHHHHHHHHHHHHHHCCG----------GGHHHHHHHTTC-SSHHHHHHHHHHHHHHCC-------
T ss_pred hHHHHHHHHHcCC-CHHHHHHHHHHHHhhCCH----------HHHHHHHHHHcC-CCHHHHHHHHHHHHHhCc-------
Confidence 4566677766654 666666666666666432 356666666665 466677777777766532
Q ss_pred HHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHH
Q 025930 109 LRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALC 188 (246)
Q Consensus 109 l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~ 188 (246)
...++.|+.++.++++.++..++.+|..+.. .+.++.|..++.++++.+|..|+.+|.
T Consensus 106 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------------------~~~~~~L~~~l~d~~~~vr~~A~~aL~ 163 (201)
T 3ltj_A 106 ---ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-------------------ERAVEPLIKALKDEDGWVRQSAADALG 163 (201)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-------------------GGGHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------------------HHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 1356677777777777777777777777651 246777888887777888888888888
Q ss_pred HhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccChhH
Q 025930 189 HLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSSPAF 235 (246)
Q Consensus 189 ~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~~~ 235 (246)
.+.. ..+++.|..++.++ +..++..|.++|..+..+
T Consensus 164 ~~~~----------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~l~~~ 199 (201)
T 3ltj_A 164 EIGG----------ERVRAAMEKLAETG-TGFARKVAVNYLETHKSL 199 (201)
T ss_dssp HHCS----------HHHHHHHHHHHHHC-CHHHHHHHHHHHHHCC--
T ss_pred HhCc----------hhHHHHHHHHHhCC-CHHHHHHHHHHHHHHHhh
Confidence 7742 12567777777654 456788888888765543
No 45
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.17 E-value=1.2e-09 Score=85.99 Aligned_cols=152 Identities=17% Similarity=0.189 Sum_probs=128.0
Q ss_pred hCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHH
Q 025930 28 AGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQL 107 (246)
Q Consensus 28 ~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~ 107 (246)
.+..+.+++.|+++ ++.++..|+.+|+.+... +.++.|+.++.+ +++.++..++.+|..+..
T Consensus 13 ~~~~~~~i~~L~~~-~~~vr~~A~~~L~~~~~~----------~~~~~L~~~l~~-~~~~vr~~a~~~L~~~~~------ 74 (201)
T 3ltj_A 13 PEKVEMYIKNLQDD-SYYVRRAAAYALGKIGDE----------RAVEPLIKALKD-EDAWVRRAAADALGQIGD------ 74 (201)
T ss_dssp HHHHHHHHHHTTCS-CHHHHHHHHHHHHHHCCG----------GGHHHHHHHTTC-SSHHHHHHHHHHHHHHCC------
T ss_pred CcchHHHHHHhcCC-CHHHHHHHHHHHHhcCCh----------hHHHHHHHHHcC-CCHHHHHHHHHHHHhhCC------
Confidence 46689999999996 899999999999988653 478999999987 689999999999988753
Q ss_pred HHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHH
Q 025930 108 KLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELAL 187 (246)
Q Consensus 108 ~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL 187 (246)
...++.|+.++.++++.++..++.+|..+.. ...++.|+.++.++++.+|..++.+|
T Consensus 75 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------------------~~~~~~L~~~l~d~~~~vr~~a~~aL 131 (201)
T 3ltj_A 75 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-------------------ERAVEPLIKALKDEDWFVRIAAAFAL 131 (201)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------------------GGGHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------------------HHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 2468999999999999999999999999872 24789999999999999999999999
Q ss_pred HHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 025930 188 CHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTS 231 (246)
Q Consensus 188 ~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~ 231 (246)
..+.. ...++.|..++.+ .+..++..|.++|..
T Consensus 132 ~~~~~----------~~~~~~L~~~l~d-~~~~vr~~A~~aL~~ 164 (201)
T 3ltj_A 132 GEIGD----------ERAVEPLIKALKD-EDGWVRQSAADALGE 164 (201)
T ss_dssp HHHTC----------GGGHHHHHHHTTC-SSHHHHHHHHHHHHH
T ss_pred HHhCC----------HHHHHHHHHHHcC-CCHHHHHHHHHHHHH
Confidence 99864 3478889999985 456788888888865
No 46
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.08 E-value=1.2e-08 Score=84.32 Aligned_cols=115 Identities=13% Similarity=0.084 Sum_probs=66.7
Q ss_pred CChHHHHHHHHHHHHhh-CCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhC
Q 025930 84 EDPQTLRMVAGAIANLC-GNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDD 162 (246)
Q Consensus 84 ~~~~~~~~a~~aL~~L~-~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~ 162 (246)
+++.++..++++|.++. .++... ...++.|+..+.++++.++..++.+|.++.. .
T Consensus 103 ~~~~vr~~a~~aL~~l~~~~~~~~-----~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-------------------~ 158 (280)
T 1oyz_A 103 KSACVRATAIESTAQRCKKNPIYS-----PKIVEQSQITAFDKSTNVRRATAFAISVIND-------------------K 158 (280)
T ss_dssp SCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHTC----------------------
T ss_pred CCHHHHHHHHHHHHHHhccCCccc-----HHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-------------------H
Confidence 45666666777776665 122111 1235666666666777777777776666551 2
Q ss_pred CChHHHHHcccCCChhHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 025930 163 GALPWIVQNSNNEASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTS 231 (246)
Q Consensus 163 g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~ 231 (246)
+.++.|+.++.++++.+|..++++|..+..+.. ..++.|+.++.+ ++..+|..|.++|..
T Consensus 159 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~--------~~~~~L~~~l~d-~~~~vR~~A~~aL~~ 218 (280)
T 1oyz_A 159 ATIPLLINLLKDPNGDVRNWAAFAININKYDNS--------DIRDCFVEMLQD-KNEEVRIEAIIGLSY 218 (280)
T ss_dssp CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH--------HHHHHHHHHTTC-SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH--------HHHHHHHHHhcC-CCHHHHHHHHHHHHH
Confidence 467777777777777777777777777743211 134555555553 334455555555543
No 47
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.02 E-value=1.9e-09 Score=100.45 Aligned_cols=161 Identities=17% Similarity=0.059 Sum_probs=127.0
Q ss_pred cHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHH-HHhcCCCHHHHHHHHHHHHHhhccccccccc
Q 025930 72 GIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALL-GMVRCGHPDVLAQVARGIANFAKCESRASTQ 150 (246)
Q Consensus 72 ~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~-~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~ 150 (246)
.+.++++.+++ .++..+..|+++|.||+.++.+++.+...|+|.+++ .+|.+++.+++..|+++|+||+..
T Consensus 35 ~i~Pll~~L~S-~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~------- 106 (684)
T 4gmo_A 35 KILPVLKDLKS-PDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQE------- 106 (684)
T ss_dssp TTHHHHHHHSS-SCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHH-------
T ss_pred hHHHHHHHcCC-CCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhh-------
Confidence 45556677887 678899999999999999999999999999988765 568888999999999999999964
Q ss_pred CChhhhHHHHhCCChHHHHHcccCCC---------------------hhHHHHHHHHHHHhcc-CchhHHHHHhCCcHHH
Q 025930 151 GTKTGRSLLIDDGALPWIVQNSNNEA---------------------SPIRRHIELALCHLAQ-HEVNAKDMISGGALWE 208 (246)
Q Consensus 151 ~~~~~~~~l~~~g~i~~Lv~ll~~~~---------------------~~v~~~a~~aL~~La~-~~~~~~~i~~~g~i~~ 208 (246)
...+.+..+...|++++|..++.... .++...++.+|++||. +.+..+.+...|+++.
T Consensus 107 ~g~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~ 186 (684)
T 4gmo_A 107 EEADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILR 186 (684)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHH
T ss_pred cCchHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHH
Confidence 34678888999999999998875321 1344567889999987 6666778889999999
Q ss_pred HHHHHhc--CCHHHHHHHHHHHHcc----ChhHHHHHH
Q 025930 209 LVRISRD--CSREDIRTLAHRTLTS----SPAFQAEMR 240 (246)
Q Consensus 209 L~~ll~~--~~~~~~~~~A~~~L~~----~~~~~~e~~ 240 (246)
|+..+.+ ..+.+++..|..+|.. ++.+...+.
T Consensus 187 l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~ 224 (684)
T 4gmo_A 187 LLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAIT 224 (684)
T ss_dssp HHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 9999854 2356778888887753 555555544
No 48
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.02 E-value=5.7e-08 Score=80.17 Aligned_cols=166 Identities=13% Similarity=0.051 Sum_probs=126.0
Q ss_pred HHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCch
Q 025930 25 IVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDK 104 (246)
Q Consensus 25 i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~ 104 (246)
+.+.+.++.|+..|+++ ++.++..|+.+|+++.. .+.++.|+.++.+ +++.++..++++|..+...+.
T Consensus 19 ~~~~~~i~~L~~~L~~~-~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~d-~~~~vR~~A~~aL~~l~~~~~ 86 (280)
T 1oyz_A 19 QCKKLNDDELFRLLDDH-NSLKRISSARVLQLRGG----------QDAVRLAIEFCSD-KNYIRRDIGAFILGQIKICKK 86 (280)
T ss_dssp HHHTSCHHHHHHHTTCS-SHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTC-SSHHHHHHHHHHHHHSCCCTT
T ss_pred HHHHhhHHHHHHHHHcC-CHHHHHHHHHHHHccCC----------chHHHHHHHHHcC-CCHHHHHHHHHHHHHhccccc
Confidence 44567899999999985 88999999999999873 2367888899987 579999999999999875433
Q ss_pred hHHHHHhcCCHHHHHH-HhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHH
Q 025930 105 LQLKLRGEGGIKALLG-MVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHI 183 (246)
Q Consensus 105 ~~~~l~~~g~i~~L~~-ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a 183 (246)
.... .++.|.+ ++.++++.++..++.+|.++... ++... ..+++.|+.++.++++.+|..+
T Consensus 87 ~~~~-----l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~--------~~~~~-----~~~~~~L~~~l~d~~~~vR~~a 148 (280)
T 1oyz_A 87 CEDN-----VFNILNNMALNDKSACVRATAIESTAQRCKK--------NPIYS-----PKIVEQSQITAFDKSTNVRRAT 148 (280)
T ss_dssp THHH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH--------CGGGH-----HHHHHHHHHHTTCSCHHHHHHH
T ss_pred cchH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHhcc--------CCccc-----HHHHHHHHHHhhCCCHHHHHHH
Confidence 2111 2344442 45678899999999999999731 11111 2468899999999999999999
Q ss_pred HHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 025930 184 ELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTS 231 (246)
Q Consensus 184 ~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~ 231 (246)
+.+|.++.. .+.++.|+.++.+ ++..+|..|.++|..
T Consensus 149 ~~aL~~~~~----------~~~~~~L~~~l~d-~~~~vr~~a~~aL~~ 185 (280)
T 1oyz_A 149 AFAISVIND----------KATIPLLINLLKD-PNGDVRNWAAFAINI 185 (280)
T ss_dssp HHHHHTC-------------CCHHHHHHHHTC-SSHHHHHHHHHHHHH
T ss_pred HHHHHhcCC----------HHHHHHHHHHHcC-CCHHHHHHHHHHHHh
Confidence 999998754 2488999999985 445688888888865
No 49
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.67 E-value=7.4e-07 Score=80.43 Aligned_cols=186 Identities=11% Similarity=0.043 Sum_probs=129.5
Q ss_pred CCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHH
Q 025930 29 GGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLK 108 (246)
Q Consensus 29 g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~ 108 (246)
..++.+..+++++ ++.++..|+.+|+.++..-..... ....+|.+..++.+ ++..++..|+.+|..++..-.. .
T Consensus 164 ~l~~~l~~l~~d~-~~~VR~~a~~~l~~l~~~~~~~~~--~~~l~~~l~~~~~d-~~~~vr~~a~~~l~~l~~~~~~--~ 237 (588)
T 1b3u_A 164 ELRQYFRNLCSDD-TPMVRRAAASKLGEFAKVLELDNV--KSEIIPMFSNLASD-EQDSVRLLAVEACVNIAQLLPQ--E 237 (588)
T ss_dssp HHHHHHHHHHTCS-CHHHHHHHHHHHHHHHHTSCHHHH--HHTHHHHHHHHHTC-SCHHHHTTHHHHHHHHHHHSCH--H
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhcHHhH--HHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHhCCH--H
Confidence 3466677777764 888999999999999765322221 23567788888877 5688998999999888732111 1
Q ss_pred HHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHH
Q 025930 109 LRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALC 188 (246)
Q Consensus 109 l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~ 188 (246)
......+|.+..++.++++.++..++.++..++.. ..........+|.+..++.++++++|..++.+|.
T Consensus 238 ~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~-----------~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~ 306 (588)
T 1b3u_A 238 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKA-----------VGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVK 306 (588)
T ss_dssp HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHH-----------HCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHH-----------hCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 12234678888888888899999999999998842 1111223457899999999999999999999999
Q ss_pred Hhcc--CchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccC
Q 025930 189 HLAQ--HEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSS 232 (246)
Q Consensus 189 ~La~--~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~ 232 (246)
.++. .++.+........++.+..++++. +..+|..+.++|..+
T Consensus 307 ~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~-~~~vR~~a~~~l~~l 351 (588)
T 1b3u_A 307 EFCENLSADCRENVIMSQILPCIKELVSDA-NQHVKSALASVIMGL 351 (588)
T ss_dssp HHHHTSCTTTHHHHHHHTHHHHHHHHHTCS-CHHHHHHHHTTGGGG
T ss_pred HHHHHhChhhhhhHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHH
Confidence 9976 223222223345667777777644 456677777777654
No 50
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.64 E-value=2.3e-07 Score=88.20 Aligned_cols=190 Identities=12% Similarity=0.065 Sum_probs=131.3
Q ss_pred CCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcch--HHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhH
Q 025930 29 GGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETN--QELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQ 106 (246)
Q Consensus 29 g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~--~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~ 106 (246)
+.++.|+..++++ ++.++..|+.+|.+++..... +..+. +.++.++..+.+ .++.++..|+.++..++.....+
T Consensus 215 ~~l~~l~~~~~d~-~~~vr~~a~~~L~~l~~~~~~~~~~~l~--~l~~~l~~~~~~-~~~~vr~~a~e~l~~l~~~~~~~ 290 (852)
T 4fdd_A 215 SFIENLFALAGDE-EPEVRKNVCRALVMLLEVRMDRLLPHMH--NIVEYMLQRTQD-QDENVALEACEFWLTLAEQPICK 290 (852)
T ss_dssp HHHHHHHHHHTCC-CHHHHHHHHHHHHHHHHHCHHHHGGGHH--HHHHHHHHHHTC-SSHHHHHHHHHHHHHHTTSTTHH
T ss_pred HHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHhCHHHHHHHHH--HHHHHHHHHccC-CcHHHHHHHHHHHHHHhcchhHH
Confidence 5678888888875 888999999999999765221 11111 356777777777 57889999999999998765444
Q ss_pred HHHHh--cCCHHHHHHHhc-----------C-----------CCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhC
Q 025930 107 LKLRG--EGGIKALLGMVR-----------C-----------GHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDD 162 (246)
Q Consensus 107 ~~l~~--~g~i~~L~~ll~-----------~-----------~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~ 162 (246)
..+-. ...++.++..+. + .+..++..++.++..++.. ..+.+. .
T Consensus 291 ~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~-----------~~~~~~-~ 358 (852)
T 4fdd_A 291 DVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANV-----------YRDELL-P 358 (852)
T ss_dssp HHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHH-----------HGGGGH-H
T ss_pred HHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHh-----------ccHHHH-H
Confidence 43211 134666666662 2 1224688888999988842 112222 2
Q ss_pred CChHHHHHcccCCChhHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccChhH
Q 025930 163 GALPWIVQNSNNEASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSSPAF 235 (246)
Q Consensus 163 g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~~~ 235 (246)
.++|.+..++.+.+..+|+.|+.+|..++......-.-.-.+.++.++..+. +.+..+|..|.+++..+...
T Consensus 359 ~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~-d~~~~Vr~~a~~~l~~l~~~ 430 (852)
T 4fdd_A 359 HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLS-DKKALVRSITCWTLSRYAHW 430 (852)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHH
Confidence 4678888888888999999999999999875432111112457788888887 45677899999999866554
No 51
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.51 E-value=9.4e-09 Score=75.51 Aligned_cols=121 Identities=15% Similarity=0.127 Sum_probs=90.4
Q ss_pred HhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhH
Q 025930 27 EAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQ 106 (246)
Q Consensus 27 ~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~ 106 (246)
....++.|+.+|+++ ++.++..|+.+|+++... .++.|+.++.+ +++.++..|+++|.++..
T Consensus 10 ~~~~~~~l~~~L~~~-~~~vR~~A~~~L~~~~~~-----------~~~~L~~~L~d-~~~~vR~~A~~aL~~~~~----- 71 (131)
T 1te4_A 10 HSSGLVPRGSHMADE-NKWVRRDVSTALSRMGDE-----------AFEPLLESLSN-EDWRIRGAAAWIIGNFQD----- 71 (131)
T ss_dssp -----------CCSS-CCCSSSSCCSSTTSCSST-----------THHHHHHGGGC-SCHHHHHHHHHHHGGGCS-----
T ss_pred ccccHHHHHHHhcCC-CHHHHHHHHHHHHHhCch-----------HHHHHHHHHcC-CCHHHHHHHHHHHHhcCC-----
Confidence 356688999999885 777888888888876432 26888888887 689999999999998753
Q ss_pred HHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHH
Q 025930 107 LKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELA 186 (246)
Q Consensus 107 ~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~a 186 (246)
...++.|...+.++++.++..++.+|.++.. ..+++.|..+++++++.++..|..+
T Consensus 72 -----~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-------------------~~a~~~L~~~l~d~~~~vr~~A~~a 127 (131)
T 1te4_A 72 -----ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG-------------------ERVRAAMEKLAETGTGFARKVAVNY 127 (131)
T ss_dssp -----HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-------------------HHHHHHHHHHTTSCCTHHHHHHHHH
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------------------HHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 1247889999999999999999999999872 1368899999998999999999999
Q ss_pred HHH
Q 025930 187 LCH 189 (246)
Q Consensus 187 L~~ 189 (246)
|..
T Consensus 128 L~~ 130 (131)
T 1te4_A 128 LET 130 (131)
T ss_dssp GGG
T ss_pred HHh
Confidence 865
No 52
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.50 E-value=1.1e-06 Score=79.28 Aligned_cols=143 Identities=11% Similarity=0.031 Sum_probs=95.6
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCC
Q 025930 73 IGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGT 152 (246)
Q Consensus 73 i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~ 152 (246)
++.+...+.+ ++..+++.|+.++..++..-.. .......+|.+..++.+++..++..++.++..++.
T Consensus 443 ~~~l~~~l~d-~~~~Vr~~a~~~l~~l~~~~~~--~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~---------- 509 (588)
T 1b3u_A 443 NSLCMAWLVD-HVYAIREAATSNLKKLVEKFGK--EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSE---------- 509 (588)
T ss_dssp HHHHHHGGGC-SSHHHHHHHHHHHHHHHHHHCH--HHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHhcC-CcHHHHHHHHHHHHHHHHHhCc--hhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH----------
Confidence 4555566665 4677888888888887632111 11223467777777777788888888888888873
Q ss_pred hhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccC
Q 025930 153 KTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSS 232 (246)
Q Consensus 153 ~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~ 232 (246)
...........+|.|..++.++++.+|..++.+|..++..-+. ........+.|.+++. +.+.++|..|.+++..+
T Consensus 510 -~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~--~~~~~~~~p~l~~l~~-d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 510 -VCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN--STLQSEVKPILEKLTQ-DQDVDVKYFAQEALTVL 585 (588)
T ss_dssp -HHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCH--HHHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHT
T ss_pred -hcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhch--hhhHHHHHHHHHHHcC-CCchhHHHHHHHHHHHh
Confidence 1112223346788999999888999999999999999763221 2233345566666544 66778899999888754
No 53
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.47 E-value=4.4e-07 Score=83.07 Aligned_cols=181 Identities=13% Similarity=0.101 Sum_probs=127.6
Q ss_pred CHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCC-chhHH
Q 025930 30 GLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGN-DKLQL 107 (246)
Q Consensus 30 ~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~-~~~~~ 107 (246)
.++.+..++.+. ++.+++.|+.++.++... ++ .+.+.+.++.+..++.+ +|+.++..|+.+|..++.+ ++...
T Consensus 122 l~~~l~~~L~d~-~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL~d-~d~~V~~~A~~aL~~i~~~~~~~~~ 196 (591)
T 2vgl_B 122 LCEPLRKCLKDE-DPYVRKTAAVCVAKLHDINAQ---MVEDQGFLDSLRDLIAD-SNPMVVANAVAALSEISESHPNSNL 196 (591)
T ss_dssp HHHHHHHHSSCS-CHHHHHHHHHHHHHHHHSSCC---CHHHHHHHHHHHHTTSC-SCHHHHHHHHHHHHHHTTSCCSCCS
T ss_pred HHHHHHHHcCCC-ChHHHHHHHHHHHHHHhhChh---hcccccHHHHHHHHhCC-CChhHHHHHHHHHHHHHhhCCCccc
Confidence 466788999875 899999999999999754 33 22234567888898986 6899999999999999843 32210
Q ss_pred HHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHH
Q 025930 108 KLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELAL 187 (246)
Q Consensus 108 ~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL 187 (246)
.-...+.++.|+..+...++..+...+.++..++. .++... ...++.+..++++.++.++..|++++
T Consensus 197 ~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~--------~~~~~~-----~~~l~~l~~~l~~~~~~V~~ea~~~i 263 (591)
T 2vgl_B 197 LDLNPQNINKLLTALNECTEWGQIFILDCLSNYNP--------KDDREA-----QSICERVTPRLSHANSAVVLSAVKVL 263 (591)
T ss_dssp CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCC--------CSHHHH-----HHHHHHHTTCSCSSTTHHHHHHHHHH
T ss_pred hhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCC--------CChHHH-----HHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 00011235667777777888899888888888773 223222 24578888899999999999999999
Q ss_pred HHhcc----CchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 025930 188 CHLAQ----HEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTS 231 (246)
Q Consensus 188 ~~La~----~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~ 231 (246)
..+.. +++..+.+. .+..+.|+.++. ++..+|..|.++|..
T Consensus 264 ~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~~--~d~~vr~~aL~~l~~ 308 (591)
T 2vgl_B 264 MKFLELLPKDSDYYNMLL-KKLAPPLVTLLS--GEPEVQYVALRNINL 308 (591)
T ss_dssp HHSCCSCCBTTBSHHHHH-HHTHHHHHHHTT--SCHHHHHHHHHHHHH
T ss_pred HHHhhccCCCHHHHHHHH-HHHHHHHHHHhc--CCccHHHHHHHHHHH
Confidence 99973 344433332 334566776653 456678888888764
No 54
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.31 E-value=3.3e-06 Score=80.23 Aligned_cols=189 Identities=15% Similarity=0.089 Sum_probs=126.2
Q ss_pred CCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHh--cCcHHHHHHHHh----------cC-----------CC
Q 025930 29 GGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMT--QGGIGLLSTTAA----------NA-----------ED 85 (246)
Q Consensus 29 g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~--~g~i~~L~~ll~----------~~-----------~~ 85 (246)
+.++.++..+++. ++.++..|+..+.+++.....+..+.. ...+|.++..+. .. .+
T Consensus 256 ~l~~~l~~~~~~~-~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~ 334 (852)
T 4fdd_A 256 NIVEYMLQRTQDQ-DENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISD 334 (852)
T ss_dssp HHHHHHHHHHTCS-SHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CC
T ss_pred HHHHHHHHHccCC-cHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCccccccccccccc
Confidence 4677888888875 788899999999999987644443321 123555555551 11 11
Q ss_pred hHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCCh
Q 025930 86 PQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGAL 165 (246)
Q Consensus 86 ~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i 165 (246)
..++..+..+|..++.... ..+.. ..++.+...+.++++.++..|+.++.+++.. ..+.-.... .+.+
T Consensus 335 ~~vr~~a~~~L~~la~~~~--~~~~~-~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~--------~~~~~~~~l-~~~l 402 (852)
T 4fdd_A 335 WNLRKCSAAALDVLANVYR--DELLP-HILPLLKELLFHHEWVVKESGILVLGAIAEG--------CMQGMIPYL-PELI 402 (852)
T ss_dssp CCHHHHHHHHHHHHHHHHG--GGGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTT--------THHHHGGGH-HHHH
T ss_pred chHHHHHHHHHHHHHHhcc--HHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc--------chHHHHHHH-HHHH
Confidence 2357788888888873211 11111 3567777888888999999999999999852 222222222 3578
Q ss_pred HHHHHcccCCChhHHHHHHHHHHHhccCchh-HHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 025930 166 PWIVQNSNNEASPIRRHIELALCHLAQHEVN-AKDMISGGALWELVRISRDCSREDIRTLAHRTLTS 231 (246)
Q Consensus 166 ~~Lv~ll~~~~~~v~~~a~~aL~~La~~~~~-~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~ 231 (246)
|.++.++.++++.+|..++++|.+++..-.. ...-.-.+.++.|++.+.+ ++..++..|.++|.+
T Consensus 403 ~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d-~~~~vr~~a~~aL~~ 468 (852)
T 4fdd_A 403 PHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILD-SNKRVQEAACSAFAT 468 (852)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTC-SSHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHH
Confidence 9999999999999999999999999862111 0001112467778888874 456788888888865
No 55
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.29 E-value=6.4e-06 Score=66.47 Aligned_cols=175 Identities=13% Similarity=0.134 Sum_probs=125.8
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchH-HHHHhcCcHHHHHHHHh-cCCChHHHHHHHHHHHHhhC--CchhHH
Q 025930 33 SLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQ-ELIMTQGGIGLLSTTAA-NAEDPQTLRMVAGAIANLCG--NDKLQL 107 (246)
Q Consensus 33 ~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~-~~i~~~g~i~~L~~ll~-~~~~~~~~~~a~~aL~~L~~--~~~~~~ 107 (246)
.+.+.+.+. +...++.|+..|..+... ++.. ..+ ...++.|...+. + .+..++..|+.++..|+. .+....
T Consensus 19 ~l~~~l~s~-~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd-~~~~V~~~a~~~l~~la~~l~~~~~~ 94 (242)
T 2qk2_A 19 DFYDKLEEK-KWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKD-SNVVLVAMAGKCLALLAKGLAKRFSN 94 (242)
T ss_dssp THHHHHTCS-SHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHHHHHGGGGHH
T ss_pred HHHhhhccC-CHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 477778775 888899999999988654 2210 001 123566777785 5 689999999999999982 222222
Q ss_pred HHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHH
Q 025930 108 KLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELAL 187 (246)
Q Consensus 108 ~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL 187 (246)
.+. ..++.++..+.++++.++..+..++.+++... .. ...+|.+...+.+.++.+|..++.+|
T Consensus 95 ~~~--~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~---------~~------~~ll~~l~~~l~~~~~~vr~~~l~~l 157 (242)
T 2qk2_A 95 YAS--ACVPSLLEKFKEKKPNVVTALREAIDAIYAST---------SL------EAQQESIVESLSNKNPSVKSETALFI 157 (242)
T ss_dssp HHH--HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTS---------CH------HHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC---------CH------HHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 222 26899999999999999999999999998421 11 13578888899988999999999999
Q ss_pred HHhcc-C-ch--hHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 025930 188 CHLAQ-H-EV--NAKDMISGGALWELVRISRDCSREDIRTLAHRTLTS 231 (246)
Q Consensus 188 ~~La~-~-~~--~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~ 231 (246)
..+.. . ++ ....+ ...++.|+.++. ++...+|..|.+++..
T Consensus 158 ~~~l~~~~~~~~~~~~l--~~l~p~l~~~l~-D~~~~VR~~A~~~l~~ 202 (242)
T 2qk2_A 158 ARALTRTQPTALNKKLL--KLLTTSLVKTLN-EPDPTVRDSSAEALGT 202 (242)
T ss_dssp HHHHTTCCGGGCCHHHH--HHHHHHHHHHHT-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCccHHHH--HHHHHHHHHHhc-CCChHHHHHHHHHHHH
Confidence 99643 2 33 22222 257888999997 5566789999988865
No 56
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.23 E-value=3.3e-05 Score=67.97 Aligned_cols=220 Identities=10% Similarity=0.003 Sum_probs=143.6
Q ss_pred hhHHhHhhccccccHHHHHHhCC--HHHHHHHhcC----------------CCCHHHHHHHHHHHHHhcCCcchHHHHHh
Q 025930 8 TISVKSEDIRAQSNQEKIVEAGG--LTSLLMLLGS----------------SEDETIHRVAAGAIANLAMNETNQELIMT 69 (246)
Q Consensus 8 ~~~~~~~~~~~~~~~~~i~~~g~--i~~Li~ll~~----------------~~~~~~~~~a~~~L~~la~~~~~~~~i~~ 69 (246)
+++.+..+...+++|..+.+.++ +++++..++. +...+++.+++.+++-|+.+++..+.+..
T Consensus 188 ~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~ 267 (480)
T 1ho8_A 188 CIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQ 267 (480)
T ss_dssp HHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHHHHHHHT
T ss_pred HHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHh
Confidence 45566666778899999986543 6777643331 11245678899999999999888888887
Q ss_pred cCcH--HHHHHHHhcCCChHHHHHHHHHHHHhhCCc-----hhHH-HHHhcCCHHHHHHHhcC---CCHHHHHHHHHHHH
Q 025930 70 QGGI--GLLSTTAANAEDPQTLRMVAGAIANLCGND-----KLQL-KLRGEGGIKALLGMVRC---GHPDVLAQVARGIA 138 (246)
Q Consensus 70 ~g~i--~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~-----~~~~-~l~~~g~i~~L~~ll~~---~~~~~~~~a~~~L~ 138 (246)
.+.. +.|+.+++...-+++.+.++.++.|+.... .... .++..++ +.++..|.. .|+++.+-.-...-
T Consensus 268 ~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e 346 (480)
T 1ho8_A 268 KYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKE 346 (480)
T ss_dssp TSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 6643 566777887666889889999999998543 2222 2333444 556666642 46776653332222
Q ss_pred Hhhcc-cccccc------------cCC---------hhhhHHHHhC--CChHHHHHcccC----------CChhHHHHHH
Q 025930 139 NFAKC-ESRAST------------QGT---------KTGRSLLIDD--GALPWIVQNSNN----------EASPIRRHIE 184 (246)
Q Consensus 139 nL~~~-~~~~~~------------~~~---------~~~~~~l~~~--g~i~~Lv~ll~~----------~~~~v~~~a~ 184 (246)
.|... ....+. .++ .++...+.++ ..+..|+.++.. .++.+-..||
T Consensus 347 ~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc 426 (480)
T 1ho8_A 347 ILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVAL 426 (480)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeec
Confidence 22210 000000 011 1222334433 247789999973 3677888899
Q ss_pred HHHHHhcc-CchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 025930 185 LALCHLAQ-HEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTL 229 (246)
Q Consensus 185 ~aL~~La~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L 229 (246)
.=|+.++. +|++|..+.+-|+-..+++++. +++++++..|..++
T Consensus 427 ~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~-h~d~~Vr~~AL~av 471 (480)
T 1ho8_A 427 NDITHVVELLPESIDVLDKTGGKADIMELLN-HSDSRVKYEALKAT 471 (480)
T ss_dssp HHHHHHHHHCTTHHHHHHHHSHHHHHHHHTS-CSSHHHHHHHHHHH
T ss_pred ccHHHHHHHCcchhHHHHHcCcHHHHHHHhc-CCCHHHHHHHHHHH
Confidence 99999987 8888888888899999999997 45677788877765
No 57
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.23 E-value=5.3e-06 Score=75.89 Aligned_cols=141 Identities=12% Similarity=0.142 Sum_probs=102.3
Q ss_pred CCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHH
Q 025930 29 GGLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQL 107 (246)
Q Consensus 29 g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~ 107 (246)
.+.+.+++++.+. +..+++.+..++.+++.. ++.. + -.+..+.+-+.+ +|+.++..|+.+|+++. .++...
T Consensus 49 ~~~~~vi~l~~s~-~~~~Krl~yl~l~~~~~~~~e~~--~---l~~n~l~kdL~~-~n~~ir~~AL~~L~~i~-~~~~~~ 120 (591)
T 2vgl_B 49 SLFPDVVNCMQTD-NLELKKLVYLYLMNYAKSQPDMA--I---MAVNSFVKDCED-PNPLIRALAVRTMGCIR-VDKITE 120 (591)
T ss_dssp GGHHHHHHTTSSS-CHHHHHHHHHHHHHHHHHSHHHH--H---TTHHHHGGGSSS-SSHHHHHHHHHHHHTCC-SGGGHH
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHcccCchHH--H---HHHHHHHHHcCC-CCHHHHHHHHHHHHcCC-hHHHHH
Confidence 3477788888775 777777777777777553 2211 1 124444444555 67888988888888775 444444
Q ss_pred HHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHH
Q 025930 108 KLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELAL 187 (246)
Q Consensus 108 ~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL 187 (246)
.+ ++.+..++.++++.+++.|+.++..+... +++ .+.+.+.++.+..++.+.++.++..|+.+|
T Consensus 121 ~l-----~~~l~~~L~d~~~~VRk~A~~al~~i~~~--------~p~---~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL 184 (591)
T 2vgl_B 121 YL-----CEPLRKCLKDEDPYVRKTAAVCVAKLHDI--------NAQ---MVEDQGFLDSLRDLIADSNPMVVANAVAAL 184 (591)
T ss_dssp HH-----HHHHHHHSSCSCHHHHHHHHHHHHHHHHS--------SCC---CHHHHHHHHHHHHTTSCSCHHHHHHHHHHH
T ss_pred HH-----HHHHHHHcCCCChHHHHHHHHHHHHHHhh--------Chh---hcccccHHHHHHHHhCCCChhHHHHHHHHH
Confidence 43 57788999999999999999999999842 222 222346789999999999999999999999
Q ss_pred HHhccC
Q 025930 188 CHLAQH 193 (246)
Q Consensus 188 ~~La~~ 193 (246)
..++.+
T Consensus 185 ~~i~~~ 190 (591)
T 2vgl_B 185 SEISES 190 (591)
T ss_dssp HHHTTS
T ss_pred HHHHhh
Confidence 999874
No 58
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.21 E-value=3.5e-05 Score=62.05 Aligned_cols=144 Identities=17% Similarity=0.176 Sum_probs=107.8
Q ss_pred CHHHHHHHhc-CCCCHHHHHHHHHHHHHhcCC--cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhH
Q 025930 30 GLTSLLMLLG-SSEDETIHRVAAGAIANLAMN--ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQ 106 (246)
Q Consensus 30 ~i~~Li~ll~-~~~~~~~~~~a~~~L~~la~~--~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~ 106 (246)
.++.|...+. +. +..++..|+.+++.++.. +.....+. ..++.++..+.+ .++.++..+..+|.+++......
T Consensus 57 i~~~L~~~l~kd~-~~~V~~~a~~~l~~la~~l~~~~~~~~~--~ilp~ll~~l~d-~~~~vr~~a~~aL~~~~~~~~~~ 132 (242)
T 2qk2_A 57 LVSALKKVITKDS-NVVLVAMAGKCLALLAKGLAKRFSNYAS--ACVPSLLEKFKE-KKPNVVTALREAIDAIYASTSLE 132 (242)
T ss_dssp HHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHHGGGGHHHHH--HHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHHhhhHHHHHH--HHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHcCCHH
Confidence 4677888884 64 888899999999999855 22222222 257788888887 57889999999999998654321
Q ss_pred HHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChh--hhHHHHhCCChHHHHHcccCCChhHHHHHH
Q 025930 107 LKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKT--GRSLLIDDGALPWIVQNSNNEASPIRRHIE 184 (246)
Q Consensus 107 ~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~--~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~ 184 (246)
..++.+...+.++++.++..++..+..+... ..++ ....+ ...+|.|+.++.+.++++|..|.
T Consensus 133 ------~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~-------~~~~~~~~~~l--~~l~p~l~~~l~D~~~~VR~~A~ 197 (242)
T 2qk2_A 133 ------AQQESIVESLSNKNPSVKSETALFIARALTR-------TQPTALNKKLL--KLLTTSLVKTLNEPDPTVRDSSA 197 (242)
T ss_dssp ------HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT-------CCGGGCCHHHH--HHHHHHHHHHHTSSCHHHHHHHH
T ss_pred ------HHHHHHHHHHcCCChHHHHHHHHHHHHHHHH-------cCCCCccHHHH--HHHHHHHHHHhcCCChHHHHHHH
Confidence 2467788888999999999999999996431 1112 12222 25789999999999999999999
Q ss_pred HHHHHhcc
Q 025930 185 LALCHLAQ 192 (246)
Q Consensus 185 ~aL~~La~ 192 (246)
.++..++.
T Consensus 198 ~~l~~l~~ 205 (242)
T 2qk2_A 198 EALGTLIK 205 (242)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999975
No 59
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.15 E-value=0.00021 Score=60.10 Aligned_cols=176 Identities=14% Similarity=0.055 Sum_probs=127.5
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHH-hcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHHH
Q 025930 31 LTSLLMLLGSSEDETIHRVAAGAIAN-LAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKL 109 (246)
Q Consensus 31 i~~Li~ll~~~~~~~~~~~a~~~L~~-la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l 109 (246)
+..+++-|.++ +...++.+..-|.. +..|.+....|++.+|+..|+.+.... +.+.+.+++.|+.++......-.-+
T Consensus 120 a~~iiekL~~~-~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~-~gN~q~Y~L~AL~~LM~~v~Gm~gv 197 (339)
T 3dad_A 120 VNAILEKLYSS-SGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAA-DHNYQSYILRALGQLMLFVDGMLGV 197 (339)
T ss_dssp HHHHHHHHHHC-CHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTS-CHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHHhcC-CcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhc-ChHHHHHHHHHHHHHHhccccccch
Confidence 45566777765 45557777888887 677888999999999999999999874 7999999999999998776666555
Q ss_pred H-hcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHH--------hCC--ChHHHHHccc---CC
Q 025930 110 R-GEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLI--------DDG--ALPWIVQNSN---NE 175 (246)
Q Consensus 110 ~-~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~--------~~g--~i~~Lv~ll~---~~ 175 (246)
+ ....|..+..++.+.+..+.+.|+.+|..++.+. +.+-..+. +.| -.+.++.+|+ ..
T Consensus 198 vs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~s--------e~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~ 269 (339)
T 3dad_A 198 VAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYS--------ENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGA 269 (339)
T ss_dssp HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHC--------GGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSC
T ss_pred hCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccC--------cccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCC
Confidence 5 4457888888888888999999999999998642 22222111 112 3678899997 67
Q ss_pred ChhHHHHHHHHHHHhc---cCchhHHHHH----hCCcHHHHHHHHhcC
Q 025930 176 ASPIRRHIELALCHLA---QHEVNAKDMI----SGGALWELVRISRDC 216 (246)
Q Consensus 176 ~~~v~~~a~~aL~~La---~~~~~~~~i~----~~g~i~~L~~ll~~~ 216 (246)
+.+++.+|...|-.+- .+.+.+..+. +.|.-..+.+.+...
T Consensus 270 D~elq~~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~ 317 (339)
T 3dad_A 270 DPELLVYTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTA 317 (339)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCT
T ss_pred CHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhcc
Confidence 8999999877666552 2334344443 456666677767653
No 60
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.12 E-value=0.00035 Score=53.76 Aligned_cols=156 Identities=18% Similarity=0.168 Sum_probs=89.8
Q ss_pred HhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh-CCch
Q 025930 27 EAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC-GNDK 104 (246)
Q Consensus 27 ~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~-~~~~ 104 (246)
+...++.++.+|+. +-..++..|..++.+++.. ++..+.++ ..|+.+++..+--.+....+.++.-++ .+|+
T Consensus 30 d~~~l~~lI~~LDD-DlwtV~kNAl~vi~~i~~~~~el~epl~-----~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe 103 (253)
T 2db0_A 30 DESVLKKLIELLDD-DLWTVVKNAISIIMVIAKTREDLYEPML-----KKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE 103 (253)
T ss_dssp CHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTCGGGHHHHH-----HHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHH
T ss_pred hHHHHHHHHHHhcc-HHHHHHHhHHHHHHHHHHHhHHHHHHHH-----HHHHHHHhhcccCchHHHHHHHHhHHHHhCHH
Confidence 45679999999987 4788999999999999877 54444332 233333332222223233344444443 2232
Q ss_pred hHHHHH--------------------------------hcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCC
Q 025930 105 LQLKLR--------------------------------GEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGT 152 (246)
Q Consensus 105 ~~~~l~--------------------------------~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~ 152 (246)
....++ -.+++.-+..++.+++..=+-.|+..+..+..
T Consensus 104 ~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGe---------- 173 (253)
T 2db0_A 104 LVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGE---------- 173 (253)
T ss_dssp HHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCT----------
T ss_pred HHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc----------
Confidence 221110 00122334444444443333334433333331
Q ss_pred hhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhcc-CchhHHHHH
Q 025930 153 KTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQ-HEVNAKDMI 201 (246)
Q Consensus 153 ~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~-~~~~~~~i~ 201 (246)
+.-..+ .-.+|.|..+|++.|.-+|..+..+|.++|. ++..|+.+.
T Consensus 174 --n~~~yv-~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~ 220 (253)
T 2db0_A 174 --NSFKYV-NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVI 220 (253)
T ss_dssp --TTHHHH-GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred --cCcccc-CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHH
Confidence 111111 1358899999999999999999999999998 777776654
No 61
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.09 E-value=0.00017 Score=58.68 Aligned_cols=186 Identities=12% Similarity=0.136 Sum_probs=124.5
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHH-hcCC-cchHHHHHh-cCcHHHHHHHHhcCCChHHHHHHHHHHHHhhC--C-chhH-
Q 025930 34 LLMLLGSSEDETIHRVAAGAIAN-LAMN-ETNQELIMT-QGGIGLLSTTAANAEDPQTLRMVAGAIANLCG--N-DKLQ- 106 (246)
Q Consensus 34 Li~ll~~~~~~~~~~~a~~~L~~-la~~-~~~~~~i~~-~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~--~-~~~~- 106 (246)
+-+.+.+. ++..++.|...|.. +..+ ++....-.+ ...+..|...+....|..++..|+.+|..|+. . +...
T Consensus 21 f~~~l~s~-~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 21 FQERITSS-KWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp HHHHHTCS-SHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred HHHHhhcC-CHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 34556675 88888889999999 8633 211100000 12355677778443688899999999999982 2 2332
Q ss_pred HHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHH
Q 025930 107 LKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELA 186 (246)
Q Consensus 107 ~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~a 186 (246)
..... .++.++..+++..+.++..+..++..++.+- ++.. ..-.-...++.|...+.+.++.+|..++.+
T Consensus 100 ~y~~~--llp~ll~~l~dkk~~V~~aa~~al~~i~~~~-------~~~~-~~~~l~~ll~~l~~~l~~k~~~vk~~al~~ 169 (249)
T 2qk1_A 100 DYVSL--VFTPLLDRTKEKKPSVIEAIRKALLTICKYY-------DPLA-SSGRNEDMLKDILEHMKHKTPQIRMECTQL 169 (249)
T ss_dssp HHHHH--HHHHHHHGGGCCCHHHHHHHHHHHHHHHHHS-------CTTC-TTCTTHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHH--HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHc-------cccc-cCCcHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 33322 5899999999988999999998888887421 0000 000001357788888888899999999999
Q ss_pred HHHhccCchh--H--HHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 025930 187 LCHLAQHEVN--A--KDMISGGALWELVRISRDCSREDIRTLAHRTLTS 231 (246)
Q Consensus 187 L~~La~~~~~--~--~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~ 231 (246)
|..++..... . ........++.|.+++. ++...+|..|..++..
T Consensus 170 l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~-D~~~~VR~aA~~~l~~ 217 (249)
T 2qk1_A 170 FNASMKEEKDGYSTLQRYLKDEVVPIVIQIVN-DTQPAIRTIGFESFAI 217 (249)
T ss_dssp HHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHT-CSSHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcchhHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHH
Confidence 9999762221 1 12222678999999997 5677789999998874
No 62
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.07 E-value=8.8e-06 Score=59.34 Aligned_cols=88 Identities=17% Similarity=0.111 Sum_probs=73.5
Q ss_pred CHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHHH
Q 025930 30 GLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKL 109 (246)
Q Consensus 30 ~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l 109 (246)
.++.|+..|+++ ++.++..|+.+|+++... +.++.|+..+.+ +++.++..++++|.++..
T Consensus 43 ~~~~L~~~L~d~-~~~vR~~A~~aL~~~~~~----------~a~~~L~~~L~d-~~~~VR~~A~~aL~~~~~-------- 102 (131)
T 1te4_A 43 AFEPLLESLSNE-DWRIRGAAAWIIGNFQDE----------RAVEPLIKLLED-DSGFVRSGAARSLEQIGG-------- 102 (131)
T ss_dssp THHHHHHGGGCS-CHHHHHHHHHHHGGGCSH----------HHHHHHHHHHHH-CCTHHHHHHHHHHHHHCS--------
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHHhcCCH----------HHHHHHHHHHcC-CCHHHHHHHHHHHHHhCc--------
Confidence 379999999985 899999999999998742 258888898887 679999999999998852
Q ss_pred HhcCCHHHHHHHhcCCCHHHHHHHHHHHHH
Q 025930 110 RGEGGIKALLGMVRCGHPDVLAQVARGIAN 139 (246)
Q Consensus 110 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~n 139 (246)
...++.|..+++++++.++..|+.+|..
T Consensus 103 --~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 103 --ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp --HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred --HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 2357889999999999999999988764
No 63
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.06 E-value=4.9e-05 Score=60.57 Aligned_cols=177 Identities=12% Similarity=0.070 Sum_probs=129.9
Q ss_pred hCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC--cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCC-ch
Q 025930 28 AGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN--ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGN-DK 104 (246)
Q Consensus 28 ~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~--~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~-~~ 104 (246)
.+.+..|+.+|.. +|+.++..+..+|.++-.. ...+..+++ ..++.++.++++ .|+.+.-.|..+|..+-.+ +-
T Consensus 32 e~~l~~L~~LL~d-kD~~vk~raL~~LeellK~~~~~l~~~~~e-~~Ld~iI~llk~-~dEkval~A~r~L~~LLe~vpL 108 (265)
T 3b2a_A 32 KRALFLILELAGE-DDETTRLRAFVALGEILKRADSDLRMMVLE-RHLDVFINALSQ-ENEKVTIKALRALGYLVKDVPM 108 (265)
T ss_dssp HHHHHHHHHHTTS-SCHHHHHHHHHHHHHHHHHSCHHHHHHHHH-HHHHHHHHTCCS-TTHHHHHHHHHHHHHHHTTCCB
T ss_pred hhHHHHHHHHHhc-cchHHHHHHHHHHHHHHHhccccccHHHHH-HHHHHHHHHHhc-cchhHHHHHHHHHHHHHcCCCC
Confidence 4568889999977 4899999999999999665 444444443 578899999987 6899988999999999843 32
Q ss_pred hHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHH
Q 025930 105 LQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIE 184 (246)
Q Consensus 105 ~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~ 184 (246)
..+.+.. .+..+.++++++++-+...++..+.-+... ++. .+++..+..++.+.+++++..+.
T Consensus 109 ~~~~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~--------~~~-------~~V~~~l~sLl~Skd~~vK~agl 171 (265)
T 3b2a_A 109 GSKTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPL--------EDS-------KLVRTYINELVVSPDLYTKVAGF 171 (265)
T ss_dssp CHHHHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBS--------CCC-------HHHHHHHHHHHTCSSHHHHHHHH
T ss_pred CHHHHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcc--------cch-------HHHHHHHHHHHhCCChhHHHHHH
Confidence 2233322 367889999999999999999999988432 111 24677889999989999999999
Q ss_pred HHHHHhccCc---hhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHc
Q 025930 185 LALCHLAQHE---VNAKDMISGGALWELVRISRDCSREDIRTLAHRTLT 230 (246)
Q Consensus 185 ~aL~~La~~~---~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~ 230 (246)
.++.+++... +..+. .+..+-.++++. ++.+++.|...+.
T Consensus 172 ~~L~eia~~S~D~~i~~~-----I~~eI~elL~~e-D~~l~e~aLd~Le 214 (265)
T 3b2a_A 172 CLFLNMLNSSADSGHLTL-----ILDEIPSLLQND-NEFIVELALDVLE 214 (265)
T ss_dssp HHHHHHGGGCSSCCCGGG-----TTTTHHHHHTCS-CHHHHHHHHHHHH
T ss_pred HHHHHhhcccCCHHHHHH-----HHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 9999998732 22222 344455666644 6667777776664
No 64
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.04 E-value=0.00019 Score=65.92 Aligned_cols=158 Identities=10% Similarity=0.040 Sum_probs=105.1
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHHHH
Q 025930 31 LTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLR 110 (246)
Q Consensus 31 i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~ 110 (246)
....++++.+. +...++-+--.+..++..+..-..+ .+..|.+-+.+ +++.++..|+.+|.++.. ++..
T Consensus 72 ~~~vik~~~s~-~~~~Krl~Yl~~~~~~~~~~e~~~l----~in~l~kDL~~-~n~~vr~lAL~~L~~i~~-~~~~---- 140 (618)
T 1w63_A 72 QLECLKLIASQ-KFTDKRIGYLGAMLLLDERQDVHLL----MTNCIKNDLNH-STQFVQGLALCTLGCMGS-SEMC---- 140 (618)
T ss_dssp HHHHHHHHHSS-SHHHHHHHHHHHHHHCCCCHHHHHH----HHHHHHHHHSC-SSSHHHHHHHHHHHHHCC-HHHH----
T ss_pred HHHHHHHHcCC-chHHHHHHHHHHHHHhCCCcHHHHH----HHHHHHHhcCC-CCHhHHHHHHHHHHhcCC-HHHH----
Confidence 44445555543 4444554444555555432111111 24455555565 578888899999999874 3322
Q ss_pred hcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHh
Q 025930 111 GEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHL 190 (246)
Q Consensus 111 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~L 190 (246)
...++.+.+++.++++.+++.|+.++..+.. .+++.. .+.++.+..++.+.++.++..|+.+|..+
T Consensus 141 -~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~--------~~p~~v-----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i 206 (618)
T 1w63_A 141 -RDLAGEVEKLLKTSNSYLRKKAALCAVHVIR--------KVPELM-----EMFLPATKNLLNEKNHGVLHTSVVLLTEM 206 (618)
T ss_dssp -HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH--------HCGGGG-----GGGGGGTTTSTTCCCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH--------HChHHH-----HHHHHHHHHHhCCCCHhHHHHHHHHHHHH
Confidence 2357888999999999999999999999984 223322 26788899999999999999999999999
Q ss_pred ccCc-hhHHHHHhCCcHHHHHHHHhc
Q 025930 191 AQHE-VNAKDMISGGALWELVRISRD 215 (246)
Q Consensus 191 a~~~-~~~~~i~~~g~i~~L~~ll~~ 215 (246)
+... +....+. ..++.+++++.+
T Consensus 207 ~~~~~~~~~~~~--~~v~~l~~~L~~ 230 (618)
T 1w63_A 207 CERSPDMLAHFR--KLVPQLVRILKN 230 (618)
T ss_dssp CCSHHHHHHHHH--TTHHHHHHHHHH
T ss_pred HHhChHHHHHHH--HHHHHHHHHHHH
Confidence 8743 3222332 567778777753
No 65
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.02 E-value=1.5e-05 Score=69.66 Aligned_cols=186 Identities=11% Similarity=0.040 Sum_probs=123.2
Q ss_pred CHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcc--hHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHH
Q 025930 30 GLTSLLMLLGSSEDETIHRVAAGAIANLAMNET--NQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQL 107 (246)
Q Consensus 30 ~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~--~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~ 107 (246)
.++.+...+.++ ++.++..++.+|..++.... .+..+. .+.++.++..+++ .++.++..++.++..++.......
T Consensus 218 l~~~l~~~~~~~-~~~vr~~~~~~l~~l~~~~~~~~~~~~~-~~l~~~~~~~~~~-~~~~v~~~a~~~l~~~~~~~~~~~ 294 (462)
T 1ibr_B 218 IMQVVCEATQCP-DTRVRVAALQNLVKIMSLYYQYMETYMG-PALFAITIEAMKS-DIDEVALQGIEFWSNVCDEEMDLA 294 (462)
T ss_dssp HHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCGGGCTTTTT-TTHHHHHHHHHHC-SSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcC-CchHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666654 88889999999999975421 111111 1456677777776 578899999999988874321000
Q ss_pred ------------------HHHh---cCCHHHHHHHhcC-------CCHHHHHHHHHHHHHhhcccccccccCChhhhHHH
Q 025930 108 ------------------KLRG---EGGIKALLGMVRC-------GHPDVLAQVARGIANFAKCESRASTQGTKTGRSLL 159 (246)
Q Consensus 108 ------------------~l~~---~g~i~~L~~ll~~-------~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l 159 (246)
.+++ ...+|.++..+.. ++..++..|+.+|..++..- .+.+
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~-----------~~~~ 363 (462)
T 1ibr_B 295 IEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCC-----------EDDI 363 (462)
T ss_dssp HHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHT-----------TTTH
T ss_pred HhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhc-----------cHHH
Confidence 0111 2246667777743 23468889999999988421 1122
Q ss_pred HhCCChHHHHHcccCCChhHHHHHHHHHHHhccCch--hHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccC
Q 025930 160 IDDGALPWIVQNSNNEASPIRRHIELALCHLAQHEV--NAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSS 232 (246)
Q Consensus 160 ~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~~--~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~ 232 (246)
. ..++|.+...+.+.+..+|..|+.+|+.++.... .-+.. -...++.++..+.++ +..+|..|.++|..+
T Consensus 364 ~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~-l~~~~~~l~~~l~d~-~~~Vr~~a~~~l~~~ 435 (462)
T 1ibr_B 364 V-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDP-SVVVRDTAAWTVGRI 435 (462)
T ss_dssp H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTT-TTTHHHHHHHGGGCS-CHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHH-HHHHHHHHHHHhcCC-CHHHHHHHHHHHHHH
Confidence 2 2467788888888899999999999999987332 11111 156889999999854 577899999988753
No 66
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=97.99 E-value=4.6e-05 Score=70.05 Aligned_cols=180 Identities=12% Similarity=0.102 Sum_probs=119.1
Q ss_pred hCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCC-chh
Q 025930 28 AGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGN-DKL 105 (246)
Q Consensus 28 ~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~-~~~ 105 (246)
...++.+..+|++. ++.+++.|+.+++++... ++. ++ +.++.+..++.+ .|+.++..|+.+|..++.. ++.
T Consensus 141 ~~l~~~l~~~L~~~-~~~VRk~A~~al~~l~~~~p~~----v~-~~~~~l~~lL~D-~d~~V~~~Al~~L~~i~~~~~~~ 213 (618)
T 1w63_A 141 RDLAGEVEKLLKTS-NSYLRKKAALCAVHVIRKVPEL----ME-MFLPATKNLLNE-KNHGVLHTSVVLLTEMCERSPDM 213 (618)
T ss_dssp HHHHHHHHHHHHSC-CHHHHHHHHHHHHHHHHHCGGG----GG-GGGGGTTTSTTC-CCHHHHHHHHHHHHHHCCSHHHH
T ss_pred HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHChHH----HH-HHHHHHHHHhCC-CCHhHHHHHHHHHHHHHHhChHH
Confidence 45688889999885 899999999999999654 322 11 466677777776 6789999999999999854 332
Q ss_pred HHHHHhcCCHHHHHHHhcC---------------CCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHH
Q 025930 106 QLKLRGEGGIKALLGMVRC---------------GHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQ 170 (246)
Q Consensus 106 ~~~l~~~g~i~~L~~ll~~---------------~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ 170 (246)
...+ ...++.++..|.. .++.++...+.+|+.++. .+++..+ ...+.|.+
T Consensus 214 ~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~--------~~~~~~~-----~~~~~L~~ 278 (618)
T 1w63_A 214 LAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGR--------NDDDSSE-----AMNDILAQ 278 (618)
T ss_dssp HHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTT--------TCHHHHH-----TTHHHHHH
T ss_pred HHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCC--------CCHHHHH-----HHHHHHHH
Confidence 2222 2568888887753 478899999999999984 3333322 34445555
Q ss_pred ccc------CCChhHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccChhH
Q 025930 171 NSN------NEASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSSPAF 235 (246)
Q Consensus 171 ll~------~~~~~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~~~ 235 (246)
++. +.+..+...|+.++..+..++..+. .++..|..++.+ ++..+|..|..+|..+...
T Consensus 279 l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~-----~a~~~L~~~L~~-~d~~vr~~aL~~L~~i~~~ 343 (618)
T 1w63_A 279 VATNTETSKNVGNAILYETVLTIMDIKSESGLRV-----LAINILGRFLLN-NDKNIRYVALTSLLKTVQT 343 (618)
T ss_dssp HHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHH-----HHHHHHHHHHTC-SSTTTHHHHHHHHHHHHHH
T ss_pred HHhccccccchHHHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHHhC-CCCchHHHHHHHHHHHHhh
Confidence 442 2245677788888877765433222 345667777664 3345677777776654433
No 67
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=97.88 E-value=2.7e-05 Score=67.91 Aligned_cols=157 Identities=6% Similarity=0.000 Sum_probs=105.2
Q ss_pred hCCHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCCc--chHHHHHhcCcHHHHHHHHhcCC-ChHHHHHHHHHHHHhhCC-
Q 025930 28 AGGLTSLLMLLGSSE-DETIHRVAAGAIANLAMNE--TNQELIMTQGGIGLLSTTAANAE-DPQTLRMVAGAIANLCGN- 102 (246)
Q Consensus 28 ~g~i~~Li~ll~~~~-~~~~~~~a~~~L~~la~~~--~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~~a~~aL~~L~~~- 102 (246)
.+.+|.|++.++++. ++.++..|+.+|..++.+- +.-.... ...++.+...+.+.+ ++.++..|+.++.++...
T Consensus 127 ~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~ 205 (462)
T 1ibr_B 127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT 205 (462)
T ss_dssp TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 356899999998853 7788888999999997541 1111111 124677778888743 688999999999987632
Q ss_pred chhH-HHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHH
Q 025930 103 DKLQ-LKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRR 181 (246)
Q Consensus 103 ~~~~-~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~ 181 (246)
...- ......-.++.+...+.+++++++..++.+|..++... .+.... ....+.++.++..+.+.+++++.
T Consensus 206 ~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~-------~~~~~~-~~~~~l~~~~~~~~~~~~~~v~~ 277 (462)
T 1ibr_B 206 KANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLY-------YQYMET-YMGPALFAITIEAMKSDIDEVAL 277 (462)
T ss_dssp HHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC-------GGGCTT-TTTTTHHHHHHHHHHCSSHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH-------HHHHHH-HHHHHHHHHHHHHHcCCchHHHH
Confidence 1110 00011113566667777888999999999999988421 011111 11115677788888888999999
Q ss_pred HHHHHHHHhccC
Q 025930 182 HIELALCHLAQH 193 (246)
Q Consensus 182 ~a~~aL~~La~~ 193 (246)
.++..+..++..
T Consensus 278 ~a~~~l~~~~~~ 289 (462)
T 1ibr_B 278 QGIEFWSNVCDE 289 (462)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 68
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.83 E-value=0.00045 Score=58.06 Aligned_cols=161 Identities=12% Similarity=0.109 Sum_probs=115.6
Q ss_pred hccccccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHh-cCcHHHHHHHHhcCCChHHHHHHH
Q 025930 15 DIRAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMT-QGGIGLLSTTAANAEDPQTLRMVA 93 (246)
Q Consensus 15 ~~~~~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~-~g~i~~L~~ll~~~~~~~~~~~a~ 93 (246)
+....+....++..||+..|+.....+ +..++..+.+++.++..+...-..+++ ...|.++..++.+ .+..+.+.|+
T Consensus 146 ~q~D~~Fa~EFI~~~GL~~Li~vi~~~-~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~lyslv~s-~~~~V~k~AL 223 (339)
T 3dad_A 146 FQEDKDLVPEFVHSEGLSCLIRVGAAA-DHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLYTLCAS-LSRLVVKTAL 223 (339)
T ss_dssp HHTCTTHHHHHHHTTHHHHHHHHHTTS-CHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHGGGC-SCHHHHHHHH
T ss_pred hhcchHHHHHHHHhccHHHHHHHHHhc-ChHHHHHHHHHHHHHHhccccccchhCCHHHHHHHHHHHcC-ccHHHHHHHH
Confidence 445778889999999999999999887 788899999999999999878877774 4567788888887 6799999999
Q ss_pred HHHHHhhCC-chhHHHHHhc--------C--CHHHHHHHhc---CCCHHHHHHHHHHHHHhhcccccccccCCh---hhh
Q 025930 94 GAIANLCGN-DKLQLKLRGE--------G--GIKALLGMVR---CGHPDVLAQVARGIANFAKCESRASTQGTK---TGR 156 (246)
Q Consensus 94 ~aL~~L~~~-~~~~~~l~~~--------g--~i~~L~~ll~---~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~---~~~ 156 (246)
..|..++.+ +.+...+.++ | ....++.+|. +.+.+++.++...+-.+-... ++.+ +..
T Consensus 224 ~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~~a-----pd~d~~~di~ 298 (339)
T 3dad_A 224 KLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINKTLAAL-----PDQDSFYDVT 298 (339)
T ss_dssp HHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHHHHC-----SSHHHHHHHH
T ss_pred HHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcC-----CChhHHHHHH
Confidence 999999843 4344333321 1 2678999997 678999999987776554321 1112 233
Q ss_pred HHHHhCCChHHHHHcccCC--ChhHHHH
Q 025930 157 SLLIDDGALPWIVQNSNNE--ASPIRRH 182 (246)
Q Consensus 157 ~~l~~~g~i~~Lv~ll~~~--~~~v~~~ 182 (246)
..+.+.|.=..+.+.+... +++++++
T Consensus 299 d~Le~~gi~~~i~r~l~~~~~~~~l~~Q 326 (339)
T 3dad_A 299 DALEQQGMEALVQRHLGTAGTDVDLRTQ 326 (339)
T ss_dssp HHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred HHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence 3344455445566666655 5565554
No 69
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.81 E-value=0.00097 Score=53.19 Aligned_cols=168 Identities=12% Similarity=-0.010 Sum_probs=120.8
Q ss_pred hhhhHHhHhhccc-cccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcC
Q 025930 6 LNTISVKSEDIRA-QSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANA 83 (246)
Q Consensus 6 ~~~~~~~~~~~~~-~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~ 83 (246)
.+++.++.++-.. +.--....-...++.++.++++. |+.+.-.|.++|..+-.+ +-....+.. .+..+..++++
T Consensus 51 ~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~-dEkval~A~r~L~~LLe~vpL~~~~y~K--l~~aL~dlik~- 126 (265)
T 3b2a_A 51 LRAFVALGEILKRADSDLRMMVLERHLDVFINALSQE-NEKVTIKALRALGYLVKDVPMGSKTFLK--AAKTLVSLLES- 126 (265)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCST-THHHHHHHHHHHHHHHTTCCBCHHHHHH--HHHHHHHHTTS-
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHHHhcC-
Confidence 3556666665322 11122333356799999999886 888888899999999666 545555554 56788888886
Q ss_pred CChHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCC
Q 025930 84 EDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDG 163 (246)
Q Consensus 84 ~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g 163 (246)
.++-+..+++..+..+.--.. .. +++..+..++.|++.+++..+.+++.|++... ++++.- .+
T Consensus 127 ~~~il~~eaae~Lgklkv~~~-~~-----~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S------~D~~i~-----~~ 189 (265)
T 3b2a_A 127 PDDMMRIETIDVLSKLQPLED-SK-----LVRTYINELVVSPDLYTKVAGFCLFLNMLNSS------ADSGHL-----TL 189 (265)
T ss_dssp CCHHHHHHHHHHHHHCCBSCC-CH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGC------SSCCCG-----GG
T ss_pred CCchHHHHHHHHhCcCCcccc-hH-----HHHHHHHHHHhCCChhHHHHHHHHHHHhhccc------CCHHHH-----HH
Confidence 578889999999999831111 12 23567888889999999999999999999642 222211 24
Q ss_pred ChHHHHHcccCCChhHHHHHHHHHHHhccCc
Q 025930 164 ALPWIVQNSNNEASPIRRHIELALCHLAQHE 194 (246)
Q Consensus 164 ~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~ 194 (246)
++.-+-.+++++|+.+++.|+.+|-.+.+.+
T Consensus 190 I~~eI~elL~~eD~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 190 ILDEIPSLLQNDNEFIVELALDVLEKALSFP 220 (265)
T ss_dssp TTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence 5666778888999999999999999997743
No 70
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=97.78 E-value=0.00036 Score=65.87 Aligned_cols=184 Identities=11% Similarity=0.081 Sum_probs=123.0
Q ss_pred CHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cc-hHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCch---
Q 025930 30 GLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ET-NQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDK--- 104 (246)
Q Consensus 30 ~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~-~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~--- 104 (246)
.++.+...+.+. ++.++..++.+|..+... ++ .... .....++.++..+.+ .++.++..++.++.+++....
T Consensus 218 il~~l~~~~~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~-~~~~l~~~~~~~~~~-~~~~v~~~al~~l~~l~~~~~~~~ 294 (876)
T 1qgr_A 218 IMQVVCEATQCP-DTRVRVAALQNLVKIMSLYYQYMETY-MGPALFAITIEAMKS-DIDEVALQGIEFWSNVCDEEMDLA 294 (876)
T ss_dssp HHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHSGGGCHHH-HTTTHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHHHhHh
Confidence 566777777664 788888899999998754 22 2222 223567777777766 568888899999888874310
Q ss_pred -------------------hHHHHHhcCCHHHHHHHhcC-------CCHHHHHHHHHHHHHhhcccccccccCChhhhHH
Q 025930 105 -------------------LQLKLRGEGGIKALLGMVRC-------GHPDVLAQVARGIANFAKCESRASTQGTKTGRSL 158 (246)
Q Consensus 105 -------------------~~~~l~~~g~i~~L~~ll~~-------~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~ 158 (246)
...... ...++.++..+.. ++..++..+..++..++.. ..+.
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~-----------~~~~ 362 (876)
T 1qgr_A 295 IEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATC-----------CEDD 362 (876)
T ss_dssp HHHHHHHHHSSCCSSCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHH-----------HGGG
T ss_pred hhhccccccCCCccchhHHHHHHHH-HHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHH-----------CcHh
Confidence 000011 2346677777752 3456888999999988842 1122
Q ss_pred HHhCCChHHHHHcccCCChhHHHHHHHHHHHhccCc--hhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 025930 159 LIDDGALPWIVQNSNNEASPIRRHIELALCHLAQHE--VNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTS 231 (246)
Q Consensus 159 l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~--~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~ 231 (246)
+. ..+++.+...+.+.+..+|..++.+|..++... +...... ...++.++..+.+ ++..+|..|.+++..
T Consensus 363 ~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d-~~~~vr~~a~~~l~~ 434 (876)
T 1qgr_A 363 IV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKD-PSVVVRDTAAWTVGR 434 (876)
T ss_dssp GH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTC-SSHHHHHHHHHHHHH
T ss_pred hH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 22 246777778888889999999999999998743 2222222 3478888888874 456788888888864
No 71
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.76 E-value=0.00021 Score=70.42 Aligned_cols=184 Identities=11% Similarity=0.046 Sum_probs=120.9
Q ss_pred CCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh--CCch--
Q 025930 29 GGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC--GNDK-- 104 (246)
Q Consensus 29 g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~--~~~~-- 104 (246)
..++.|++.|.+. ++.+|..|+.+|++++..-.. ..+. ..++.++..+.+ +++.++..++.+|..++ ..+.
T Consensus 48 ~il~~Ll~~L~d~-~~~vR~~A~~~L~~l~~~~~~-~~~~--~i~~~Ll~~l~d-~~~~vR~~a~~~L~~i~~~l~~~~~ 122 (1230)
T 1u6g_C 48 KVVKMILKLLEDK-NGEVQNLAVKCLGPLVSKVKE-YQVE--TIVDTLCTNMLS-DKEQLRDISSIGLKTVIGELPPASS 122 (1230)
T ss_dssp HHHHHHHHHTTCS-SHHHHHHHHHHHHHHHTTSCH-HHHH--HHHHHHHHHTTC-SSSHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhCCH-HHHH--HHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHhCCCccc
Confidence 4588899999874 888999999999999866222 1111 245677777776 46778888999999887 2222
Q ss_pred ---hHHHHHhcCCHHHHHHHhc-CCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHH
Q 025930 105 ---LQLKLRGEGGIKALLGMVR-CGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIR 180 (246)
Q Consensus 105 ---~~~~l~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~ 180 (246)
..... -...+|.|+..+. ++++.++..|+.++..++..-+ ...... . ...++.+...+.++++.+|
T Consensus 123 ~~~~~~~~-~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~-------~~l~~~-~-~~ll~~l~~~L~~~~~~vR 192 (1230)
T 1u6g_C 123 GSALAANV-CKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQG-------GLLVNF-H-PSILTCLLPQLTSPRLAVR 192 (1230)
T ss_dssp -CCTHHHH-HHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTC-------SSCTTT-H-HHHHHHHGGGGGCSSHHHH
T ss_pred ccchHHHH-HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhH-------hHHHHH-H-HHHHHHHHHHHcCCcHHHH
Confidence 11111 2236888999998 5889999999999999884210 000000 0 2356778888888899999
Q ss_pred HHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHc
Q 025930 181 RHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLT 230 (246)
Q Consensus 181 ~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~ 230 (246)
..|+.+|..++..... .+ -...++.++..+........+..|..++.
T Consensus 193 ~~a~~al~~l~~~~~~--~~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~ 239 (1230)
T 1u6g_C 193 KRTIIALGHLVMSCGN--IV-FVDLIEHLLSELSKNDSMSTTRTYIQCIA 239 (1230)
T ss_dssp HHHHHHHHHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHH
T ss_pred HHHHHHHHHHHHhcCH--HH-HHHHHHHHHHHhccCCchhHHHHHHHHHH
Confidence 9999999999874322 12 23467888888765433233444444443
No 72
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.75 E-value=0.00021 Score=58.06 Aligned_cols=152 Identities=14% Similarity=0.143 Sum_probs=104.2
Q ss_pred CHHHHHHHh-cCCCCHHHHHHHHHHHHHhcCCc---chH-HHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhC--C
Q 025930 30 GLTSLLMLL-GSSEDETIHRVAAGAIANLAMNE---TNQ-ELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCG--N 102 (246)
Q Consensus 30 ~i~~Li~ll-~~~~~~~~~~~a~~~L~~la~~~---~~~-~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~--~ 102 (246)
.++.|...+ +.. +..++..|+.+|+.++.+- ... ..... .+|.++..+.+ ..+.++..+..+|..++. +
T Consensus 61 ~~~~L~~~l~~D~-n~~v~~~A~~al~~la~~l~~~~f~~~y~~~--llp~ll~~l~d-kk~~V~~aa~~al~~i~~~~~ 136 (249)
T 2qk1_A 61 LLGIYGHIIQKDA-NIQAVALAAQSVELICDKLKTPGFSKDYVSL--VFTPLLDRTKE-KKPSVIEAIRKALLTICKYYD 136 (249)
T ss_dssp HHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHHCTTTSCHHHHHH--HHHHHHHGGGC-CCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhccCC-CHHHHHHHHHHHHHHHHhcccccccHHHHHH--HHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHcc
Confidence 377788888 454 8888899999999998432 111 22221 47788888876 457888888888888872 2
Q ss_pred chhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCC-hhhhHHHHhCCChHHHHHcccCCChhHHH
Q 025930 103 DKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGT-KTGRSLLIDDGALPWIVQNSNNEASPIRR 181 (246)
Q Consensus 103 ~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~ 181 (246)
+.. ..-.-...++.++..+.++++.++..++..|..+.... .. +..-........+|.+..++.+.++++|.
T Consensus 137 ~~~-~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~------~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~ 209 (249)
T 2qk1_A 137 PLA-SSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEE------KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRT 209 (249)
T ss_dssp TTC-TTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC------CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHH
T ss_pred ccc-cCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc------CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 211 00000124677888889889999999999999887421 00 01101112246899999999999999999
Q ss_pred HHHHHHHHhcc
Q 025930 182 HIELALCHLAQ 192 (246)
Q Consensus 182 ~a~~aL~~La~ 192 (246)
.|..++..++.
T Consensus 210 aA~~~l~~i~~ 220 (249)
T 2qk1_A 210 IGFESFAILIK 220 (249)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999864
No 73
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.70 E-value=0.0009 Score=58.92 Aligned_cols=171 Identities=11% Similarity=0.078 Sum_probs=117.1
Q ss_pred HhHhhccccccHHHHHHhCCH--HHHHHHhcCCCCHHHHHHHHHHHHHhcCCc-ch-----HHHHHhcCcHHHHHHHHhc
Q 025930 11 VKSEDIRAQSNQEKIVEAGGL--TSLLMLLGSSEDETIHRVAAGAIANLAMNE-TN-----QELIMTQGGIGLLSTTAAN 82 (246)
Q Consensus 11 ~~~~~~~~~~~~~~i~~~g~i--~~Li~ll~~~~~~~~~~~a~~~L~~la~~~-~~-----~~~i~~~g~i~~L~~ll~~ 82 (246)
.+=.++++++-.+.+.+.+.. +.|+..++...-+.+.+.+..+|.|+.... .. .+.++..++++ +++.+..
T Consensus 251 ~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~ 329 (480)
T 1ho8_A 251 LIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALP-TVQSLSE 329 (480)
T ss_dssp HHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHH-HHHHHHS
T ss_pred HHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccchH-HHHHHhh
Confidence 344457787777777777754 788888888767888888999999997653 11 22333445544 5555543
Q ss_pred --CCChHHHHHHHHHH-------HHhhCCchhH------------------------HHHHh--cCCHHHHHHHhcC---
Q 025930 83 --AEDPQTLRMVAGAI-------ANLCGNDKLQ------------------------LKLRG--EGGIKALLGMVRC--- 124 (246)
Q Consensus 83 --~~~~~~~~~a~~aL-------~~L~~~~~~~------------------------~~l~~--~g~i~~L~~ll~~--- 124 (246)
..|+++.+..-... ..+++.++.. .++.+ ...++.|+++|.+
T Consensus 330 rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~ 409 (480)
T 1ho8_A 330 RKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVR 409 (480)
T ss_dssp SCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhcc
Confidence 35666654332211 1122122221 22222 1257889999973
Q ss_pred -------CCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHh
Q 025930 125 -------GHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHL 190 (246)
Q Consensus 125 -------~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~L 190 (246)
.++.+..-||.-++.++. ..|.+|..+.+.|+=+.+++++.++|++||++|+.|+..+
T Consensus 410 ~~~~~~s~d~~~laVAc~Digefvr--------~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQkl 474 (480)
T 1ho8_A 410 NGDVNAKQEKIIIQVALNDITHVVE--------LLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAI 474 (480)
T ss_dssp TTCCCSHHHHHHHHHHHHHHHHHHH--------HCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHH
T ss_pred ccccccCCCcceEEeecccHHHHHH--------HCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 367788999999999995 4579999999999999999999999999999999998765
No 74
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=97.65 E-value=0.00059 Score=64.29 Aligned_cols=185 Identities=12% Similarity=0.127 Sum_probs=122.8
Q ss_pred CHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-c-chHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchh--
Q 025930 30 GLTSLLMLLGSSEDETIHRVAAGAIANLAMN-E-TNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKL-- 105 (246)
Q Consensus 30 ~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~-~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~-- 105 (246)
.++.|...+.+. ++.++..++.+|..++.. + .....+. ...++.+...+.+ .++.++..++.++..++.....
T Consensus 225 ll~~l~~~~~~~-~~~~r~~a~~~l~~l~~~~~~~~~~~l~-~~l~~~~~~~~~~-~~~~vr~~a~~~l~~l~~~~~~~~ 301 (861)
T 2bpt_A 225 LMQVVCEATQAE-DIEVQAAAFGCLCKIMSKYYTFMKPYME-QALYALTIATMKS-PNDKVASMTVEFWSTICEEEIDIA 301 (861)
T ss_dssp HHHHHHHHHTCS-CHHHHHHHHHHHHHHHHHHGGGCHHHHH-HTHHHHHHHHTTC-SSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHHHHhhh
Confidence 466677777664 788899999999998755 2 2222222 1456666666666 5788999999999888743211
Q ss_pred ----------------HHHHHhcCCHHHHHHHhcCC-------CHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhC
Q 025930 106 ----------------QLKLRGEGGIKALLGMVRCG-------HPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDD 162 (246)
Q Consensus 106 ----------------~~~l~~~g~i~~L~~ll~~~-------~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~ 162 (246)
....+ ...++.++..+... +..++..+..+|..++.. ..+.+. .
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~-----------~~~~~~-~ 368 (861)
T 2bpt_A 302 YELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQN-----------CGNHIL-E 368 (861)
T ss_dssp HHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHH-----------HGGGGH-H
T ss_pred hhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHH-----------ccHhHH-H
Confidence 11111 34677888888642 357888999999998842 111111 1
Q ss_pred CChHHHHHcccCCChhHHHHHHHHHHHhccCc--hhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccC
Q 025930 163 GALPWIVQNSNNEASPIRRHIELALCHLAQHE--VNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSS 232 (246)
Q Consensus 163 g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~--~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~ 232 (246)
..++.+.+.+.+.+..+|+.|+.++..++... +...... ...++.|+..+.+ .+..+|..+.+++...
T Consensus 369 ~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d-~~~~vr~~a~~~l~~l 438 (861)
T 2bpt_A 369 PVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMND-QSLQVKETTAWCIGRI 438 (861)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGC-SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCC-CcHHHHHHHHHHHHHH
Confidence 35677777888889999999999999998743 2222222 2467788888875 4566788888777643
No 75
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=97.62 E-value=0.00045 Score=65.09 Aligned_cols=189 Identities=12% Similarity=0.105 Sum_probs=120.3
Q ss_pred hCCHHHHHHHhcCC------CCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhC
Q 025930 28 AGGLTSLLMLLGSS------EDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCG 101 (246)
Q Consensus 28 ~g~i~~Li~ll~~~------~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~ 101 (246)
...+|.++..+... ++..++..|..+|..++..-.. .+. ...++.+...+.+ .+...++.++.++..++.
T Consensus 323 ~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~--~~~-~~l~~~l~~~l~~-~~~~~r~~a~~~l~~i~~ 398 (861)
T 2bpt_A 323 KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGN--HIL-EPVLEFVEQNITA-DNWRNREAAVMAFGSIMD 398 (861)
T ss_dssp HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHHTTC-SSHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccH--hHH-HHHHHHHHHHcCC-CChhHHHHHHHHHHHHHc
Confidence 45688888888753 1246788899999988764211 111 1134555566666 568899999999999984
Q ss_pred Cc--hhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhh-hHHHHhCCChHHHHHcccCCChh
Q 025930 102 ND--KLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTG-RSLLIDDGALPWIVQNSNNEASP 178 (246)
Q Consensus 102 ~~--~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~-~~~l~~~g~i~~Lv~ll~~~~~~ 178 (246)
.. +.-...+. ..++.++..+.++++.++..++.++..++..-. ++. .... -...+|.++..+.++ +.
T Consensus 399 ~~~~~~~~~~l~-~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~-------~~~~~~~~-~~~~l~~l~~~l~~~-~~ 468 (861)
T 2bpt_A 399 GPDKVQRTYYVH-QALPSILNLMNDQSLQVKETTAWCIGRIADSVA-------ESIDPQQH-LPGVVQACLIGLQDH-PK 468 (861)
T ss_dssp SSCHHHHHHHHH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHG-------GGSCTTTT-HHHHHHHHHHHHTSC-HH
T ss_pred CCCHHHHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhh-------hhcCCHHH-HHHHHHHHHHHhccC-hH
Confidence 42 22222222 368888899988999999999999999884200 000 0001 123577888888765 99
Q ss_pred HHHHHHHHHHHhccCc-----hhHHHHHhCCcHHHHHHHHhcC-CHHHHHHHHHHHHcc
Q 025930 179 IRRHIELALCHLAQHE-----VNAKDMISGGALWELVRISRDC-SREDIRTLAHRTLTS 231 (246)
Q Consensus 179 v~~~a~~aL~~La~~~-----~~~~~i~~~g~i~~L~~ll~~~-~~~~~~~~A~~~L~~ 231 (246)
++..++++|.+++..- +.-.... ...++.|+..+... .+..++..+.+++..
T Consensus 469 v~~~a~~al~~l~~~~~~~~~~~l~~~~-~~il~~L~~~l~~~d~~~~vr~~a~~al~~ 526 (861)
T 2bpt_A 469 VATNCSWTIINLVEQLAEATPSPIYNFY-PALVDGLIGAANRIDNEFNARASAFSALTT 526 (861)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSCGGGGGH-HHHHHHHHHHHTCSCCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccchhhHHHH-HHHHHHHHHHHhCcCcchHHHHHHHHHHHH
Confidence 9999999999997521 1100111 23466777887643 335667777777653
No 76
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.55 E-value=0.006 Score=58.20 Aligned_cols=169 Identities=20% Similarity=0.131 Sum_probs=99.6
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh-CCchhHHHH
Q 025930 31 LTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC-GNDKLQLKL 109 (246)
Q Consensus 31 i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~-~~~~~~~~l 109 (246)
++.|...+... +...+..|+.+|+.+-.+..+... +..|+..+.+..+..+++.++.+|..+. .+++-...+
T Consensus 474 ~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~a------i~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~l 546 (963)
T 4ady_A 474 YEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEA------IHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDL 546 (963)
T ss_dssp HHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHH------HHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHH
T ss_pred HHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHH------HHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHH
Confidence 77788888764 555566678888877444333322 2333333333345556666666666554 222221111
Q ss_pred -----------HhcC----------------CHHHHHHHhc-CCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHh
Q 025930 110 -----------RGEG----------------GIKALLGMVR-CGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLID 161 (246)
Q Consensus 110 -----------~~~g----------------~i~~L~~ll~-~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~ 161 (246)
+++| .|+.|+..+. +.+.+++..|+.+|+.+.. +.+
T Consensus 547 i~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~--------g~~-------- 610 (963)
T 4ady_A 547 ITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLL--------RDY-------- 610 (963)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTS--------SSC--------
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhcc--------CCH--------
Confidence 1111 1343444443 4566788888888777663 222
Q ss_pred CCChHHHHH-cccCCChhHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHc
Q 025930 162 DGALPWIVQ-NSNNEASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLT 230 (246)
Q Consensus 162 ~g~i~~Lv~-ll~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~ 230 (246)
..++.++. +++..++.+|..+..+|+.++....+.+ ++..|..+.. +++..++..|..+|.
T Consensus 611 -e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~------aid~L~~L~~-D~d~~Vrq~Ai~ALG 672 (963)
T 4ady_A 611 -TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQS------AIDVLDPLTK-DPVDFVRQAAMIALS 672 (963)
T ss_dssp -SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHH------HHHHHHHHHT-CSSHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHH------HHHHHHHHcc-CCCHHHHHHHHHHHH
Confidence 35777777 4466799999999999999976333311 4556666766 556777878877776
No 77
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.52 E-value=0.0053 Score=56.35 Aligned_cols=141 Identities=14% Similarity=0.070 Sum_probs=100.4
Q ss_pred CCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHH
Q 025930 29 GGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLK 108 (246)
Q Consensus 29 g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~ 108 (246)
.+.+..++++.+. +...++-+--++..++..+..--.+ .+..+.+=+.+ +++.++..|+.+|+++.. ++...
T Consensus 74 ~~~~~vvkl~~s~-~~~~Krl~YL~l~~~~~~~~e~~~L----~iN~l~kDl~~-~n~~ir~lALr~L~~i~~-~e~~~- 145 (621)
T 2vgl_A 74 FGHMEAVNLLSSN-RYTEKQIGYLFISVLVNSNSELIRL----INNAIKNDLAS-RNPTFMGLALHCIANVGS-REMAE- 145 (621)
T ss_dssp SCHHHHHHGGGCS-CHHHHHHHHHHHHHSCCCCHHHHHH----HHHHHHHHHHS-CCHHHHHHHHHHHHHHCC-HHHHH-
T ss_pred hhHHHHHHHhcCC-CHHHHHHHHHHHHHHccCCcHHHHH----HHHHHHHhcCC-CCHHHHHHHHHHhhccCC-HHHHH-
Confidence 3467777888775 7776776666676776553211111 23344444555 578888899999998854 44333
Q ss_pred HHhcCCHHHHHHHh--cCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHH
Q 025930 109 LRGEGGIKALLGMV--RCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELA 186 (246)
Q Consensus 109 l~~~g~i~~L~~ll--~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~a 186 (246)
..++.+.+.+ .+.++-+++.|+-++..+... +++ .+...+.++.+..++.+.++.++..|+.+
T Consensus 146 ----~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~--------~p~---~~~~~~~~~~l~~lL~d~d~~V~~~a~~~ 210 (621)
T 2vgl_A 146 ----AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRT--------SPD---LVPMGDWTSRVVHLLNDQHLGVVTAATSL 210 (621)
T ss_dssp ----HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHH--------CGG---GCCCCSCHHHHHHHTTCSCHHHHHHHHHH
T ss_pred ----HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh--------Chh---hcCchhHHHHHHHHhCCCCccHHHHHHHH
Confidence 2467888898 788999999999999998841 122 22224789999999998999999999999
Q ss_pred HHHhcc
Q 025930 187 LCHLAQ 192 (246)
Q Consensus 187 L~~La~ 192 (246)
+..++.
T Consensus 211 l~~i~~ 216 (621)
T 2vgl_A 211 ITTLAQ 216 (621)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999987
No 78
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.36 E-value=0.0039 Score=53.20 Aligned_cols=185 Identities=12% Similarity=0.064 Sum_probs=108.9
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh-CCchhHHHH
Q 025930 31 LTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC-GNDKLQLKL 109 (246)
Q Consensus 31 i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~-~~~~~~~~l 109 (246)
+..|.+-++++ ++.++-.|.++|+++...+-.+ . ..+.+.+.+.+ .++-+++.|+-+...|. .+++..
T Consensus 106 ~Nsl~kDl~~~-N~~iR~lALRtL~~I~~~~m~~-~-----l~~~lk~~L~d-~~pyVRk~A~l~~~kL~~~~pe~v--- 174 (355)
T 3tjz_B 106 TSSLTKDMTGK-EDSYRGPAVRALCQITDSTMLQ-A-----IERYMKQAIVD-KVPSVSSSALVSSLHLLKCSFDVV--- 174 (355)
T ss_dssp HHHHHHHHHSS-CHHHHHHHHHHHHHHCCTTTHH-H-----HHHHHHHHHTC-SSHHHHHHHHHHHHHHTTTCHHHH---
T ss_pred HHHHHhhcCCC-cHhHHHHHHHHHhcCCCHHHHH-H-----HHHHHHHHcCC-CCHHHHHHHHHHHHHHhccCHHHH---
Confidence 56677777775 7778888888888887665211 1 23455666776 57899999988888887 445432
Q ss_pred HhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccc-------cC---ChhhhHHHHh--------------CCCh
Q 025930 110 RGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRAST-------QG---TKTGRSLLID--------------DGAL 165 (246)
Q Consensus 110 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~-------~~---~~~~~~~l~~--------------~g~i 165 (246)
+ +.+..+-+++.+.++.++.+|..++..++..+..... .+ ++-..-.++. ...+
T Consensus 175 -~-~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~ 252 (355)
T 3tjz_B 175 -K-RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLF 252 (355)
T ss_dssp -H-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-------------
T ss_pred -H-HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHH
Confidence 2 5788888888888888888888888888753210000 00 1111111111 2345
Q ss_pred HHHHHcccCCChhHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccCh
Q 025930 166 PWIVQNSNNEASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSSP 233 (246)
Q Consensus 166 ~~Lv~ll~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~ 233 (246)
+.+...+++.++.|...|+++|..+...+.. .. ..++..|..++.+ ++..+|-.|.+.|....
T Consensus 253 ~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~--~~--~~a~~~L~~fLss-~d~niryvaLr~L~~l~ 315 (355)
T 3tjz_B 253 DFIESCLRNKHEMVVYEAASAIVNLPGCSAK--EL--APAVSVLQLFCSS-PKAALRYAAVRTLNKVA 315 (355)
T ss_dssp ----CCCCCSSHHHHHHHHHHHTC---------------CCCTHHHHHHS-SSSSSHHHHHHCC----
T ss_pred HHHHHHHcCCChHHHHHHHHHHHhccCCCHH--HH--HHHHHHHHHHHcC-CCchHHHHHHHHHHHHH
Confidence 5666677777899999999999998652221 11 3345566677764 44557888887776533
No 79
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.35 E-value=0.0017 Score=63.98 Aligned_cols=186 Identities=9% Similarity=0.028 Sum_probs=121.3
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHH-HHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHHH
Q 025930 31 LTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQE-LIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKL 109 (246)
Q Consensus 31 i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~-~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l 109 (246)
++.|+.-+.++ |+.++..|...|.+....+.... .-.....++.++..+.+ .++.++..|+.+|.+++..-.. ..+
T Consensus 8 l~~lL~~l~s~-d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d-~~~~vR~~A~~~L~~l~~~~~~-~~~ 84 (1230)
T 1u6g_C 8 ISNLLEKMTSS-DKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLED-KNGEVQNLAVKCLGPLVSKVKE-YQV 84 (1230)
T ss_dssp HHHHHHHTTCS-SHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHHHTTSCH-HHH
T ss_pred HHHHHHhcCCC-CHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhCCH-HHH
Confidence 67888888886 88889888888888754431100 00011246677777776 6899999999999999843211 111
Q ss_pred HhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChh-----hhHHHHhCCChHHHHHccc-CCChhHHHHH
Q 025930 110 RGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKT-----GRSLLIDDGALPWIVQNSN-NEASPIRRHI 183 (246)
Q Consensus 110 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~-----~~~~l~~~g~i~~Lv~ll~-~~~~~v~~~a 183 (246)
..+++.++..+.++++.++..++.++..++..- + +. .... .....+|.|...+. .+++.++..|
T Consensus 85 --~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l------~-~~~~~~~~~~~-~~~~llp~L~~~l~~~~~~~~~~~a 154 (1230)
T 1u6g_C 85 --ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGEL------P-PASSGSALAAN-VCKKITGRLTSAIAKQEDVSVQLEA 154 (1230)
T ss_dssp --HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHC------C------CCTHHH-HHHHHHHHHHHHHSCCSCHHHHHHH
T ss_pred --HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhC------C-CcccccchHHH-HHHHHHHHHHHHHcCCCchHHHHHH
Confidence 124677888888888899999999999887531 1 11 0111 12357899999998 4789999999
Q ss_pred HHHHHHhccC-chhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 025930 184 ELALCHLAQH-EVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTS 231 (246)
Q Consensus 184 ~~aL~~La~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~ 231 (246)
+.+|..++.. .+.-.. .....++.+...+.+ .+..+|..|..++..
T Consensus 155 l~~l~~~~~~~~~~l~~-~~~~ll~~l~~~L~~-~~~~vR~~a~~al~~ 201 (1230)
T 1u6g_C 155 LDIMADMLSRQGGLLVN-FHPSILTCLLPQLTS-PRLAVRKRTIIALGH 201 (1230)
T ss_dssp HHHHHHHHHHTCSSCTT-THHHHHHHHGGGGGC-SSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhHHHH-HHHHHHHHHHHHHcC-CcHHHHHHHHHHHHH
Confidence 9999999741 110000 012245566666664 445788888887763
No 80
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.34 E-value=0.0021 Score=59.13 Aligned_cols=184 Identities=13% Similarity=0.109 Sum_probs=109.3
Q ss_pred hCCHHHHHHHh--cCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhC-Cch
Q 025930 28 AGGLTSLLMLL--GSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCG-NDK 104 (246)
Q Consensus 28 ~g~i~~Li~ll--~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~-~~~ 104 (246)
...++.+.+.+ .+. ++.+++.|+.++.++..... +.+...+.++.+..++.+ .|+.+...|+.++..++. ++.
T Consensus 145 ~~l~~~v~~~l~~~d~-~~~VRK~A~~al~kl~~~~p--~~~~~~~~~~~l~~lL~d-~d~~V~~~a~~~l~~i~~~~~~ 220 (621)
T 2vgl_A 145 EAFAGEIPKILVAGDT-MDSVKQSAALCLLRLYRTSP--DLVPMGDWTSRVVHLLND-QHLGVVTAATSLITTLAQKNPE 220 (621)
T ss_dssp HHHTTHHHHHHHCSSS-CHHHHHHHHHHHHHHHHHCG--GGCCCCSCHHHHHHHTTC-SCHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHHhCh--hhcCchhHHHHHHHHhCC-CCccHHHHHHHHHHHHHHhChH
Confidence 45678888888 664 89999999999999975321 122224678899999976 689999999999999983 433
Q ss_pred hHHHHHhcCCHHHHHHHhc----CC-------------CHHHHHHHHHHHHHhhcccccccccCChhhhH----------
Q 025930 105 LQLKLRGEGGIKALLGMVR----CG-------------HPDVLAQVARGIANFAKCESRASTQGTKTGRS---------- 157 (246)
Q Consensus 105 ~~~~l~~~g~i~~L~~ll~----~~-------------~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~---------- 157 (246)
.-. ..++.++..|. .+ ++..+...+..+..++..+ +++.++
T Consensus 221 ~~~-----~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~-------d~~~~~~l~~~L~~il 288 (621)
T 2vgl_A 221 EFK-----TSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPE-------DPAVRGRLTECLETIL 288 (621)
T ss_dssp HHT-----THHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCS-------SHHHHHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCC-------CHHHHHHHHHHHHHHH
Confidence 110 11222221111 00 2334444433333333210 001000
Q ss_pred ------------------------------------HHHhCCChHHHHHcccCCChhHHHHHHHHHHHhccCchhHHHHH
Q 025930 158 ------------------------------------LLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQHEVNAKDMI 201 (246)
Q Consensus 158 ------------------------------------~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~~~~~~i~ 201 (246)
.+. ..++..|..++.+.++.+|..++.+|..++........+.
T Consensus 289 ~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~-~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~ 367 (621)
T 2vgl_A 289 NKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLL-VRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVK 367 (621)
T ss_dssp HHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHH-HHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHH
T ss_pred HhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHH-HHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHH
Confidence 001 1245677788887889999999999999987432222222
Q ss_pred hCCcHHHHHHHHhcCCHHHHHHHHHHHHc
Q 025930 202 SGGALWELVRISRDCSREDIRTLAHRTLT 230 (246)
Q Consensus 202 ~~g~i~~L~~ll~~~~~~~~~~~A~~~L~ 230 (246)
.....++..++.+++..++..|.++|.
T Consensus 368 --~~~~~i~~~L~~d~d~~Ir~~aL~lL~ 394 (621)
T 2vgl_A 368 --THIETVINALKTERDVSVRQRAVDLLY 394 (621)
T ss_dssp --TTHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred --HHHHHHHHHhccCCCHhHHHHHHHHHH
Confidence 245566676763445667888887774
No 81
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=97.28 E-value=0.0013 Score=62.15 Aligned_cols=189 Identities=10% Similarity=0.049 Sum_probs=120.4
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCC-ChHHHHHHHHHHHHhhC--CchhHHHH
Q 025930 33 SLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAE-DPQTLRMVAGAIANLCG--NDKLQLKL 109 (246)
Q Consensus 33 ~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~~a~~aL~~L~~--~~~~~~~l 109 (246)
.|++.|.++ ++.+ ..++.+++.++..+..... -...++.+...+.+.. ++.++..++.+|..++. .++.-..
T Consensus 94 ~ll~~l~~~-~~~~-~~~~~~l~~i~~~~~~~~~--w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~- 168 (876)
T 1qgr_A 94 YVLHTLGTE-TYRP-SSASQCVAGIACAEIPVNQ--WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQD- 168 (876)
T ss_dssp HHHHHTTTC-CSSS-CHHHHHHHHHHHHHGGGTC--CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGG-
T ss_pred HHHHHhCCC-cHHH-HHHHHHHHHHHHhhCcccc--cHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHh-
Confidence 378888775 5556 7788888888654211000 1235778888888742 78899999999999983 2221000
Q ss_pred HhcCCHHHHHHHhcCC--CHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHH
Q 025930 110 RGEGGIKALLGMVRCG--HPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELAL 187 (246)
Q Consensus 110 ~~~g~i~~L~~ll~~~--~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL 187 (246)
.-...++.+...+.++ +..++..++.++.++...- .+...........++.+..++.++++++|..++.+|
T Consensus 169 ~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~-------~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l 241 (876)
T 1qgr_A 169 KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT-------KANFDKESERHFIMQVVCEATQCPDTRVRVAALQNL 241 (876)
T ss_dssp GHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGC-------HHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH-------HHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 1123466677777766 6889999999999987421 011111111112577777788888999999999999
Q ss_pred HHhcc-CchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccChh
Q 025930 188 CHLAQ-HEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSSPA 234 (246)
Q Consensus 188 ~~La~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~~ 234 (246)
..++. .++.-........++.++..+. +.++.++..|.+.+....+
T Consensus 242 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~v~~~al~~l~~l~~ 288 (876)
T 1qgr_A 242 VKIMSLYYQYMETYMGPALFAITIEAMK-SDIDEVALQGIEFWSNVCD 288 (876)
T ss_dssp HHHHHHSGGGCHHHHTTTHHHHHHHHHT-CSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHH
Confidence 99976 4433233344467777777776 4456667777766654433
No 82
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.05 E-value=0.085 Score=50.77 Aligned_cols=197 Identities=14% Similarity=0.120 Sum_probs=132.2
Q ss_pred CCHHHHHHHhcCCCCHHHHHHHHHHHHHhcC--CcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhH
Q 025930 29 GGLTSLLMLLGSSEDETIHRVAAGAIANLAM--NETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQ 106 (246)
Q Consensus 29 g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~--~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~ 106 (246)
+.+|.++..+.+. +..++..|-.++..+.. +++.- . ..+|.|+..+.+...=+....|+.++..|+.....+
T Consensus 95 ~~~~~~~~~~~dk-~~~v~~aa~~~~~~~~~~~~~~a~-~----~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~ 168 (986)
T 2iw3_A 95 QLVPAICTNAGNK-DKEIQSVASETLISIVNAVNPVAI-K----ALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQ 168 (986)
T ss_dssp TTHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHSCGGGH-H----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHH
T ss_pred HHHHHHHHHhcCC-chHHHHHHHHHHHHHHHhCCHHHH-H----HHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHH
Confidence 5788999998775 67788887777777743 33332 2 247888887876444467778999999998432222
Q ss_pred HHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccc-cCChhhhHHHHhCC----------------------
Q 025930 107 LKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRAST-QGTKTGRSLLIDDG---------------------- 163 (246)
Q Consensus 107 ~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~-~~~~~~~~~l~~~g---------------------- 163 (246)
-...-...||.+...+-+..+++++.|..++..+|..-++.++ +..+...+.|.+-.
T Consensus 169 ~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p~~~~~~~~~l~~~tfv~~v~~~~ 248 (986)
T 2iw3_A 169 VALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADPTEVPETVHLLGATTFVAEVTPAT 248 (986)
T ss_dssp HHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCTTHHHHHHHHHTTCCCCSCCCHHH
T ss_pred HHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcChhhhHHHHHHhhcCeeEeeecchh
Confidence 2222234789999999999999999999999999976444444 11122222222111
Q ss_pred ---ChHHHHHcccCCChhHHHHHHHHHHHhcc---CchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccC
Q 025930 164 ---ALPWIVQNSNNEASPIRRHIELALCHLAQ---HEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSS 232 (246)
Q Consensus 164 ---~i~~Lv~ll~~~~~~v~~~a~~aL~~La~---~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~ 232 (246)
.+|.|.+-|......++..++..+-|||. ++.....| -...+|.|.+....-..++.|+.|.+++...
T Consensus 249 l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f-~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l 322 (986)
T 2iw3_A 249 LSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPF-LGKLLPGLKSNFATIADPEAREVTLRALKTL 322 (986)
T ss_dssp HHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHH-HTTTHHHHHHHTTTCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhh-hhhhhhHHHHHhhccCCHHHHHHHHHHHHHH
Confidence 13444445555578889999999999987 44333333 3567888888887778888999999888754
No 83
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.96 E-value=0.0059 Score=58.27 Aligned_cols=94 Identities=12% Similarity=0.116 Sum_probs=67.2
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHhh-CCchhHHHHHhcCCHHHHHHHh-cCCCHHHHHHHHHHHHHhhcccccccccCC
Q 025930 75 LLSTTAANAEDPQTLRMVAGAIANLC-GNDKLQLKLRGEGGIKALLGMV-RCGHPDVLAQVARGIANFAKCESRASTQGT 152 (246)
Q Consensus 75 ~L~~ll~~~~~~~~~~~a~~aL~~L~-~~~~~~~~l~~~g~i~~L~~ll-~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~ 152 (246)
.|+..+.+..+..++..|+.+|..+. .++ ..++.++..+ .+.++.++..++.+|+.++. ++
T Consensus 581 ~LL~~~~~d~~d~VRraAViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~gAalALGli~a--------Gn 643 (963)
T 4ady_A 581 RLLHVAVSDSNDDVRRAAVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRCGTAFALGIACA--------GK 643 (963)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTS--------SS
T ss_pred HHHHHhccCCcHHHHHHHHHHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc--------CC
Confidence 34444444345667777777777665 333 2456666644 47899999999999999984 22
Q ss_pred hhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhcc
Q 025930 153 KTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQ 192 (246)
Q Consensus 153 ~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~ 192 (246)
+. ..++..|..++++.++.|+..|..+|..+..
T Consensus 644 ~~-------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~ 676 (963)
T 4ady_A 644 GL-------QSAIDVLDPLTKDPVDFVRQAAMIALSMILI 676 (963)
T ss_dssp CC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHST
T ss_pred Cc-------HHHHHHHHHHccCCCHHHHHHHHHHHHHHhc
Confidence 21 2357788888999999999999999999965
No 84
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=96.92 E-value=0.023 Score=45.84 Aligned_cols=140 Identities=11% Similarity=0.036 Sum_probs=104.5
Q ss_pred HHHhcCCcchHHHHHhcCcHHHHHHHHhcCC----ChHHHHHHHHHHHHhh--CCchhHHHHHhcCCHHHHHHHhcCCCH
Q 025930 54 IANLAMNETNQELIMTQGGIGLLSTTAANAE----DPQTLRMVAGAIANLC--GNDKLQLKLRGEGGIKALLGMVRCGHP 127 (246)
Q Consensus 54 L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~----~~~~~~~a~~aL~~L~--~~~~~~~~l~~~g~i~~L~~ll~~~~~ 127 (246)
|--+|.+++.|..+.+.+..-.|...+.... .+.++-.+++.+..|. .+++....+.+.+++|.+++.+..+++
T Consensus 80 lQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~Gse 159 (268)
T 2fv2_A 80 LQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSE 159 (268)
T ss_dssp HHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCH
T ss_pred HHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccH
Confidence 3345899999999999887767777776432 2456778899999998 677888888999999999999999988
Q ss_pred HHHHHHHHHHHHhhcccccccccCChhhhHHHHhC--------CChHHHHH-cccCCChhHHHHHHHHHHHhccCchhHH
Q 025930 128 DVLAQVARGIANFAKCESRASTQGTKTGRSLLIDD--------GALPWIVQ-NSNNEASPIRRHIELALCHLAQHEVNAK 198 (246)
Q Consensus 128 ~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~--------g~i~~Lv~-ll~~~~~~v~~~a~~aL~~La~~~~~~~ 198 (246)
--+.-|..++..+-. ++.+-.-+... .++..+|. +...+++++-++..+|-..|+.++..|+
T Consensus 160 lSKtvAtfIlqKIL~---------dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~ 230 (268)
T 2fv2_A 160 LSKTVATFILQKILL---------DDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRARE 230 (268)
T ss_dssp HHHHHHHHHHHHHHH---------SHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred HHHHHHHHHHHHHhc---------cchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHH
Confidence 877777766665542 23333333221 23334433 4566799999999999999999999998
Q ss_pred HHHh
Q 025930 199 DMIS 202 (246)
Q Consensus 199 ~i~~ 202 (246)
.+.+
T Consensus 231 aL~~ 234 (268)
T 2fv2_A 231 ALRQ 234 (268)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8875
No 85
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=96.65 E-value=0.11 Score=44.25 Aligned_cols=138 Identities=10% Similarity=0.084 Sum_probs=96.1
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHHHH
Q 025930 31 LTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLR 110 (246)
Q Consensus 31 i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~ 110 (246)
.+..+.++.+. |...++-.--.+.+++..++. .+. ++..|.+=+.+ +++-++-.|+++|+++...+ ..+.
T Consensus 70 f~~v~kl~~s~-d~~lKrLvYLyl~~~~~~~~e--~iL---v~Nsl~kDl~~-~N~~iR~lALRtL~~I~~~~-m~~~-- 139 (355)
T 3tjz_B 70 FFAMTKLFQSN-DPTLRRMCYLTIKEMSCIAED--VII---VTSSLTKDMTG-KEDSYRGPAVRALCQITDST-MLQA-- 139 (355)
T ss_dssp HHHHHGGGGCC-CHHHHHHHHHHHHHHTTTSSC--GGG---GHHHHHHHHHS-SCHHHHHHHHHHHHHHCCTT-THHH--
T ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHhCCCHHH--HHH---HHHHHHhhcCC-CcHhHHHHHHHHHhcCCCHH-HHHH--
Confidence 34455677664 666666655555566555211 121 24444554555 57888888899998876444 3233
Q ss_pred hcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHh
Q 025930 111 GEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHL 190 (246)
Q Consensus 111 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~L 190 (246)
..+.+...+.+.++-+++.|+-+...|. +..++..+ +.++.+-+++.+.++.++.+|+.+|..+
T Consensus 140 ---l~~~lk~~L~d~~pyVRk~A~l~~~kL~--------~~~pe~v~-----~~~~~l~~ll~d~n~~V~~~Al~lL~ei 203 (355)
T 3tjz_B 140 ---IERYMKQAIVDKVPSVSSSALVSSLHLL--------KCSFDVVK-----RWVNEAQEAASSDNIMVQYHALGLLYHV 203 (355)
T ss_dssp ---HHHHHHHHHTCSSHHHHHHHHHHHHHHT--------TTCHHHHH-----TTHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHcCCCCHHHHHHHHHHHHHHh--------ccCHHHHH-----HHHHHHHHHhcCCCccHHHHHHHHHHHH
Confidence 3566788888999999999999988888 34455432 6899999999999999999999999999
Q ss_pred ccCc
Q 025930 191 AQHE 194 (246)
Q Consensus 191 a~~~ 194 (246)
..++
T Consensus 204 ~~~d 207 (355)
T 3tjz_B 204 RKND 207 (355)
T ss_dssp HTTC
T ss_pred Hhhc
Confidence 8743
No 86
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=96.65 E-value=0.081 Score=40.81 Aligned_cols=162 Identities=14% Similarity=0.210 Sum_probs=96.9
Q ss_pred hcCCcchHHHHHh----cCcHHHHHHHHhcCCChHHHHHHHHHHHHhh-CCchhHHHHHhcCCHHHHHHHhc-CCCHHHH
Q 025930 57 LAMNETNQELIMT----QGGIGLLSTTAANAEDPQTLRMVAGAIANLC-GNDKLQLKLRGEGGIKALLGMVR-CGHPDVL 130 (246)
Q Consensus 57 la~~~~~~~~i~~----~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~-~~~~~~~~l~~~g~i~~L~~ll~-~~~~~~~ 130 (246)
|+.++...+.++. ...+..++..+.+ +-=.++++|...+.+++ ..++....+ +..|+-+++ ++...+-
T Consensus 14 latge~~~eii~~a~~d~~~l~~lI~~LDD-DlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIplt 87 (253)
T 2db0_A 14 LANGEHLEKILIMAKYDESVLKKLIELLDD-DLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLT 87 (253)
T ss_dssp HHTTCSHHHHHHHHHHCHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHH
T ss_pred HhhhhhHHHHHHHHHhhHHHHHHHHHHhcc-HHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchH
Confidence 3445444444432 2335555555554 23458889999999998 567766555 344555554 6667777
Q ss_pred HHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhcc-CchhH------------
Q 025930 131 AQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQ-HEVNA------------ 197 (246)
Q Consensus 131 ~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~-~~~~~------------ 197 (246)
+..+++++.++. .+-.++ .+++|.+..-..-++++++-+...+|..++. +|+.-
T Consensus 88 qeIa~a~G~la~------------i~Pe~v-~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v~rdi~smlt 154 (253)
T 2db0_A 88 QEIAKAFGQMAK------------EKPELV-KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLS 154 (253)
T ss_dssp HHHHHHHHHHHH------------HCHHHH-HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHhHHHH------------hCHHHH-HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHHHHHHHHHhc
Confidence 788888888883 222222 2456666666666677776666666665543 33221
Q ss_pred -----HHH-----H----------hCCcHHHHHHHHhcCCHHHHHHHHHHHHcc----ChhHHHH
Q 025930 198 -----KDM-----I----------SGGALWELVRISRDCSREDIRTLAHRTLTS----SPAFQAE 238 (246)
Q Consensus 198 -----~~i-----~----------~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~----~~~~~~e 238 (246)
... + -.-.+|.|..++. +.++-+|..|.++|.. +|+++.-
T Consensus 155 skd~~Dkl~aLnFi~alGen~~~yv~PfLprL~aLL~-D~deiVRaSaVEtL~~lA~~npklRki 218 (253)
T 2db0_A 155 SKNREDKLTALNFIEAMGENSFKYVNPFLPRIINLLH-DGDEIVRASAVEALVHLATLNDKLRKV 218 (253)
T ss_dssp CSSHHHHHHHHHHHHTCCTTTHHHHGGGHHHHHGGGG-CSSHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred CCChHHHHHHHHHHHHHhccCccccCcchHHHHHHHc-CcchhhhHHHHHHHHHHHHcCHHHHHH
Confidence 111 1 1234566777776 6677889999999875 5555543
No 87
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=96.24 E-value=0.15 Score=42.37 Aligned_cols=189 Identities=13% Similarity=0.073 Sum_probs=110.1
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHH-HH---HhcCCChHHHHHHHHHHHHhhCCchhH
Q 025930 31 LTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLS-TT---AANAEDPQTLRMVAGAIANLCGNDKLQ 106 (246)
Q Consensus 31 i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~-~l---l~~~~~~~~~~~a~~aL~~L~~~~~~~ 106 (246)
+..+..+++.+. ..+--+...++-+..++.....+.+.+.-..++ .+ +.+...+..+..++++++|+..++..+
T Consensus 105 l~~l~kil~WP~--~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~ 182 (304)
T 3ebb_A 105 LQILWKAINCPE--DIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQ 182 (304)
T ss_dssp HHHHHHHHTSCT--TTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHH
T ss_pred HHHHHHHHcCCH--HhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhH
Confidence 455555555542 222234555555566665555554333323333 22 222234556778999999999888888
Q ss_pred HHHHhc--CCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHccc-CCChhHHHHH
Q 025930 107 LKLRGE--GGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSN-NEASPIRRHI 183 (246)
Q Consensus 107 ~~l~~~--g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~-~~~~~v~~~a 183 (246)
+.+... .+++.+...+.+++..++..++.++.|++...... ...+.+.. ++..+..++. ..+++....+
T Consensus 183 ~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~---~~~~~~~~-----ll~~l~~il~~~~d~EalyR~ 254 (304)
T 3ebb_A 183 KLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKD---HNIEGKAQ-----CLSLISTILEVVQDLEATFRL 254 (304)
T ss_dssp HHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHS---CCHHHHHH-----HHHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhc---CCchHHHH-----HHHHHHHHHhccCCHHHHHHH
Confidence 777642 24555555555678899999999999998641100 01111111 3334444443 3488999999
Q ss_pred HHHHHHhccCchhHHHHHh-CCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 025930 184 ELALCHLAQHEVNAKDMIS-GGALWELVRISRDCSREDIRTLAHRTL 229 (246)
Q Consensus 184 ~~aL~~La~~~~~~~~i~~-~g~i~~L~~ll~~~~~~~~~~~A~~~L 229 (246)
+.||++|...+...+.+.+ -|....+-++...+.+..+.+.+...+
T Consensus 255 LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~ 301 (304)
T 3ebb_A 255 LVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFIL 301 (304)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHH
T ss_pred HHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 9999999875444455554 455555555555445555555555444
No 88
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=95.97 E-value=0.58 Score=39.24 Aligned_cols=198 Identities=13% Similarity=0.049 Sum_probs=142.0
Q ss_pred HHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHh--cCcHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 025930 23 EKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMT--QGGIGLLSTTAANAEDPQTLRMVAGAIANL 99 (246)
Q Consensus 23 ~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~--~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L 99 (246)
+.+...+.+..|+..|..= +-+.++.++.+..++-.. ...+...++ ..--.++..++...+++++--.+-..|+.+
T Consensus 72 ~ei~~~dll~~Li~~l~~L-~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~mLRec 150 (341)
T 1upk_A 72 QELYNSGLLSTLVADLQLI-DFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLREC 150 (341)
T ss_dssp HHHHHHSHHHHHHHTGGGS-CHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHhcccC-CchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHHHHHHH
Confidence 4566789999999999885 677788888888888655 222222211 123556666677666777776677778887
Q ss_pred hCCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCC---ChHHHHHcccCCC
Q 025930 100 CGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDG---ALPWIVQNSNNEA 176 (246)
Q Consensus 100 ~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g---~i~~Lv~ll~~~~ 176 (246)
...+...+.+...+.+-.+.+.+..++-++..-|..++..|-. ............+ .+...-.|+.+++
T Consensus 151 ir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt--------~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~N 222 (341)
T 1upk_A 151 IRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLT--------RHKLLSAEFLEQHYDRFFSEYEKLLHSEN 222 (341)
T ss_dssp HTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHH--------SSHHHHHHHHHHTHHHHHHHHHHHTTCSS
T ss_pred HHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHh--------ccHHHHHHHHHHhHHHHHHHHHHHhcCCc
Confidence 7899998888888888899999999999999999999997642 2234444444433 4667788999999
Q ss_pred hhHHHHHHHHHHHhccCchhHHHHHh----CCcHHHHHHHHhcCCHHHHHHHHHHHHc
Q 025930 177 SPIRRHIELALCHLAQHEVNAKDMIS----GGALWELVRISRDCSREDIRTLAHRTLT 230 (246)
Q Consensus 177 ~~v~~~a~~aL~~La~~~~~~~~i~~----~g~i~~L~~ll~~~~~~~~~~~A~~~L~ 230 (246)
=-+|..++..|+.+-.++.+-..|.. ..-+..++.++++. .+.++--|.-..+
T Consensus 223 YVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~-sk~Iq~EAFhVFK 279 (341)
T 1upk_A 223 YVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFK 279 (341)
T ss_dssp HHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCc-hhchhhhhhhhee
Confidence 99999999999999888888666653 24455567777744 4556666655443
No 89
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=95.91 E-value=0.47 Score=38.42 Aligned_cols=179 Identities=9% Similarity=0.014 Sum_probs=110.4
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhcCCc---chHHH-HHhcC-cHHHHHHHHhcCCChHHHHHHHHHHHHhhCC---ch-
Q 025930 34 LLMLLGSSEDETIHRVAAGAIANLAMNE---TNQEL-IMTQG-GIGLLSTTAANAEDPQTLRMVAGAIANLCGN---DK- 104 (246)
Q Consensus 34 Li~ll~~~~~~~~~~~a~~~L~~la~~~---~~~~~-i~~~g-~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~---~~- 104 (246)
|-+.|.+. +...|..|...|..+.... ..... +...+ ..+.+...+.+ .+..+...++.++..++.. ..
T Consensus 14 l~e~l~sk-~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~D-sN~~v~~~al~~l~~~~~~~~~~~~ 91 (278)
T 4ffb_C 14 LEERLTYK-LWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITD-SNVVAQEQAIVALNSLIDAFASSSL 91 (278)
T ss_dssp HHHHTTCS-SHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTC-SSHHHHHHHHHHHHHHHTTCC---C
T ss_pred HHHhcccC-cHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHHhhhhhc
Confidence 56778885 8888999998888764331 11111 11223 34455566766 6888999999999888732 11
Q ss_pred hHH--HHHhcCCHHHHHHH-hcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHH
Q 025930 105 LQL--KLRGEGGIKALLGM-VRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRR 181 (246)
Q Consensus 105 ~~~--~l~~~g~i~~L~~l-l~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~ 181 (246)
... ...-...++.|+.- +.+....++..+..++..++... ... ..+++.+...+.+.+|.++.
T Consensus 92 ~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~------~~~--------~~~~e~l~~~l~~Knpkv~~ 157 (278)
T 4ffb_C 92 KNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLD------TSI--------TQSVELVIPFFEKKLPKLIA 157 (278)
T ss_dssp CHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTS------SSS--------HHHHHHHGGGGGCSCHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhc------CcH--------HHHHHHHHHHHhccCHHHHH
Confidence 111 12223456777754 77888889999888888776421 001 12356677788888999999
Q ss_pred HHHHHHHHhcc--Cch--hHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHc
Q 025930 182 HIELALCHLAQ--HEV--NAKDMISGGALWELVRISRDCSREDIRTLAHRTLT 230 (246)
Q Consensus 182 ~a~~aL~~La~--~~~--~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~ 230 (246)
.++.+|..+-. ... ..+..+. ..++.+..++. +.+..+|..|..++.
T Consensus 158 ~~l~~l~~~l~~fg~~~~~~k~~l~-~i~~~l~k~l~-d~~~~VR~aA~~l~~ 208 (278)
T 4ffb_C 158 AAANCVYELMAAFGLTNVNVQTFLP-ELLKHVPQLAG-HGDRNVRSQTMNLIV 208 (278)
T ss_dssp HHHHHHHHHHHHHTTTTCCHHHHHH-HHGGGHHHHHT-CSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcCCchhHHH-HHHHHHHHHHh-CCcHHHHHHHHHHHH
Confidence 99999988743 111 1111111 13334555555 667888999998875
No 90
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=95.54 E-value=0.33 Score=39.17 Aligned_cols=171 Identities=13% Similarity=0.095 Sum_probs=112.4
Q ss_pred hhhHHhHhhccccccHHHHHHhCCHHHHHHHhcCCC--C--HHHHHHHHHHHHHhcCC--cchHHHHHhcCcHHHHHHHH
Q 025930 7 NTISVKSEDIRAQSNQEKIVEAGGLTSLLMLLGSSE--D--ETIHRVAAGAIANLAMN--ETNQELIMTQGGIGLLSTTA 80 (246)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~i~~~g~i~~Li~ll~~~~--~--~~~~~~a~~~L~~la~~--~~~~~~i~~~g~i~~L~~ll 80 (246)
+.++++.-.|.+++.|..++++.+.--|-.+|+... . +.++-.+.++++.+.+. ++.-..+.+.+.+|..+.++
T Consensus 75 naLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrim 154 (268)
T 2fv2_A 75 NALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIM 154 (268)
T ss_dssp HHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHH
Confidence 556777778999999999999998444444444421 1 44666689999999755 44555667889999999999
Q ss_pred hcCCChHHHHHHHHHHHHhhCCchhHHHHHhc--------CCHHHHHH-HhcCCCHHHHHHHHHHHHHhhcccccccccC
Q 025930 81 ANAEDPQTLRMVAGAIANLCGNDKLQLKLRGE--------GGIKALLG-MVRCGHPDVLAQVARGIANFAKCESRASTQG 151 (246)
Q Consensus 81 ~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~--------g~i~~L~~-ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~ 151 (246)
..+ ++-.+.-|...+..+-.++..-..+... .++..++. +...+++.+.+.+++....|+ +
T Consensus 155 e~G-selSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLs---------d 224 (268)
T 2fv2_A 155 ESG-SELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLS---------D 224 (268)
T ss_dssp HHS-CHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT---------T
T ss_pred hhc-cHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHh---------c
Confidence 985 4666667888888777666554444321 12222233 224678999999999999999 5
Q ss_pred ChhhhHHHHhCCChHH------HHHcccCCChhHHHHHHHHHHHh
Q 025930 152 TKTGRSLLIDDGALPW------IVQNSNNEASPIRRHIELALCHL 190 (246)
Q Consensus 152 ~~~~~~~l~~~g~i~~------Lv~ll~~~~~~v~~~a~~aL~~L 190 (246)
++..|+++.+. +|. +..++ .+|+.++.--...+.|+
T Consensus 225 n~rar~aL~~~--LP~~Lrd~tf~~~l-~~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 225 NPRAREALRQC--LPDQLKDTTFAQVL-KDDTTTKRWLAQLVKNL 266 (268)
T ss_dssp SHHHHHHHHHH--SCGGGTSSTTHHHH-TSCHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHh--CcHHhhChHHHHHH-hcCHHHHHHHHHHHHhc
Confidence 56777777742 221 11222 25666665555544444
No 91
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=95.46 E-value=0.5 Score=40.59 Aligned_cols=154 Identities=10% Similarity=0.088 Sum_probs=99.0
Q ss_pred HHHHhcCcHHHHHHHHhc----------CCChHHHHHHHHHHHHhhCCchhHHHHH-hcCCHHHHHHHhcCCCHHHHHHH
Q 025930 65 ELIMTQGGIGLLSTTAAN----------AEDPQTLRMVAGAIANLCGNDKLQLKLR-GEGGIKALLGMVRCGHPDVLAQV 133 (246)
Q Consensus 65 ~~i~~~g~i~~L~~ll~~----------~~~~~~~~~a~~aL~~L~~~~~~~~~l~-~~g~i~~L~~ll~~~~~~~~~~a 133 (246)
+.|. .+|+..|+.++.. ..+....-.++.+|+.+..+......++ ...++..+...+.++.+.++..+
T Consensus 104 ~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~a 182 (383)
T 3eg5_B 104 QTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDA 182 (383)
T ss_dssp HHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHH
T ss_pred HHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHH
Confidence 3444 6789988888742 1244667788899999998887777766 45689999999999999999999
Q ss_pred HHHHHHhhcccc-----cccccCChhhhHHHHhCCChHHHHHcccCC-ChhHHHHHHHHHHHhccCc---hh----HHHH
Q 025930 134 ARGIANFAKCES-----RASTQGTKTGRSLLIDDGALPWIVQNSNNE-ASPIRRHIELALCHLAQHE---VN----AKDM 200 (246)
Q Consensus 134 ~~~L~nL~~~~~-----~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~-~~~v~~~a~~aL~~La~~~---~~----~~~i 200 (246)
+..|.-+|..+. ..+...-+..+. ..+..-+..++..+..+ +.+.+..+...+-.+..++ +. |..+
T Consensus 183 leLL~~lc~~~~~~gG~~~VL~Al~~~~~-~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef 261 (383)
T 3eg5_B 183 AKLLSALCILPQPEDMNERVLEAMTERAE-MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSEL 261 (383)
T ss_dssp HHHHHHHHTCCSSTTHHHHHHHHHHHHHH-HHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCcCCcHHHHHHHHHHHHH-hCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 999999887531 000000012222 33445688899999874 5566665555555554422 22 4455
Q ss_pred HhCCcHHHHHHHHhcCCHHHH
Q 025930 201 ISGGALWELVRISRDCSREDI 221 (246)
Q Consensus 201 ~~~g~i~~L~~ll~~~~~~~~ 221 (246)
...|..+.+-. ++..+++++
T Consensus 262 ~~~Gl~~il~~-lr~~~~~~L 281 (383)
T 3eg5_B 262 MRLGLHQVLQE-LREIENEDM 281 (383)
T ss_dssp HHTTHHHHHHH-HTTSCCHHH
T ss_pred HHCChHHHHHH-HhcCCChhH
Confidence 56777666655 554444433
No 92
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=95.42 E-value=0.011 Score=47.80 Aligned_cols=164 Identities=15% Similarity=0.045 Sum_probs=74.9
Q ss_pred CCHHHHHHHHHH-----HHHhcCC--cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHHHHhcCC
Q 025930 42 EDETIHRVAAGA-----IANLAMN--ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGG 114 (246)
Q Consensus 42 ~~~~~~~~a~~~-----L~~la~~--~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~ 114 (246)
+++.++..++.. |..+..| +..|....+.=..+.|..++.+ ++..++..++..+ .
T Consensus 62 ~~~~VR~~AA~~l~~~~l~~L~~D~~~~VR~~aA~~L~~~~L~~ll~D-~d~~VR~~aA~~l---~-------------- 123 (244)
T 1lrv_A 62 PFWERRAIAVRYSPVEALTPLIRDSDEVVRRAVAYRLPREQLSALMFD-EDREVRITVADRL---P-------------- 123 (244)
T ss_dssp SSHHHHHHHHTTSCGGGGGGGTTCSSHHHHHHHHTTSCSGGGGGTTTC-SCHHHHHHHHHHS---C--------------
T ss_pred CCHHHHHHHHHhCCHHHHHHHccCcCHHHHHHHHHHCCHHHHHHHHcC-CCHHHHHHHHHhC---C--------------
Confidence 366666665532 3334444 2333444332223344455555 5677776665532 1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccc--cCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHH-----
Q 025930 115 IKALLGMVRCGHPDVLAQVARGIANFAKCESRAST--QGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELAL----- 187 (246)
Q Consensus 115 i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~--~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL----- 187 (246)
.+.+..++.++++.++..++.-+ ... ..... ..+.+.|..+...-..+.+..+++++++.||..+...+
T Consensus 124 ~~~L~~L~~D~d~~VR~~aA~~l---~~~-~l~~l~~D~d~~VR~~aa~~l~~~ll~~ll~D~d~~VR~aaa~~l~~~~L 199 (244)
T 1lrv_A 124 LEQLEQMAADRDYLVRAYVVQRI---PPG-RLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRLRGDDL 199 (244)
T ss_dssp TGGGGGGTTCSSHHHHHHHHHHS---CGG-GGGGTTTCSCHHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHHCCGGGG
T ss_pred HHHHHHHHcCCCHHHHHHHHHhc---CHH-HHHHHHcCCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHhCCHHHH
Confidence 12334444455555555555421 100 00000 12334444444333334445555666666666665432
Q ss_pred HHhcc--CchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 025930 188 CHLAQ--HEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTL 229 (246)
Q Consensus 188 ~~La~--~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L 229 (246)
..|.. +...|..+.+.-+.+.|..+ + +++..++..|...|
T Consensus 200 ~~Ll~D~d~~VR~~aa~~l~~~~L~~L-~-D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 200 LELLHDPDWTVRLAAVEHASLEALREL-D-EPDPEVRLAIAGRL 241 (244)
T ss_dssp GGGGGCSSHHHHHHHHHHSCHHHHHHC-C-CCCHHHHHHHHCCC
T ss_pred HHHHcCCCHHHHHHHHHcCCHHHHHHc-c-CCCHHHHHHHHHHh
Confidence 22222 22334444443334555554 4 56667777776544
No 93
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.11 E-value=1 Score=43.37 Aligned_cols=155 Identities=14% Similarity=0.052 Sum_probs=101.3
Q ss_pred hCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh---CCch
Q 025930 28 AGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC---GNDK 104 (246)
Q Consensus 28 ~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~---~~~~ 104 (246)
...+|.|+..|+++.....+..|..++..++.....+-...=-..||.+...+-+ .-+++...|..++..+| .|.+
T Consensus 132 ~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d-~k~~v~~~~~~~~~~~~~~~~n~d 210 (986)
T 2iw3_A 132 KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWD-TKKEVKAAATAAMTKATETVDNKD 210 (986)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHHGGGCCCTT
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhccc-CcHHHHHHHHHHHHHHHhcCCCcc
Confidence 4568999999987656888888999999998653222111112367777777777 45889999999998888 3333
Q ss_pred hH-------HHHHhcCCH-------------------------HHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCC
Q 025930 105 LQ-------LKLRGEGGI-------------------------KALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGT 152 (246)
Q Consensus 105 ~~-------~~l~~~g~i-------------------------~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~ 152 (246)
.. +.+.+-.-+ |.|.+-|...+..++++++-++-|||.-- .+
T Consensus 211 ~~~~~~~~~~~~~~p~~~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv------~~ 284 (986)
T 2iw3_A 211 IERFIPSLIQCIADPTEVPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLV------ED 284 (986)
T ss_dssp TGGGHHHHHHHHHCTTHHHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTC------CC
T ss_pred hhhhHHHHHHHhcChhhhHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhc------CC
Confidence 21 112212222 33333444556778889999999999742 33
Q ss_pred hhhhHHHHhCCChHHHHHcccC-CChhHHHHHHHHHHHh
Q 025930 153 KTGRSLLIDDGALPWIVQNSNN-EASPIRRHIELALCHL 190 (246)
Q Consensus 153 ~~~~~~l~~~g~i~~Lv~ll~~-~~~~v~~~a~~aL~~L 190 (246)
+.-...++ -..+|-+-..... .+|++|+.+..|+..|
T Consensus 285 ~~~~~~f~-~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l 322 (986)
T 2iw3_A 285 PQVIAPFL-GKLLPGLKSNFATIADPEAREVTLRALKTL 322 (986)
T ss_dssp HHHHHHHH-TTTHHHHHHHTTTCCSHHHHHHHHHHHHHH
T ss_pred HHHHhhhh-hhhhhHHHHHhhccCCHHHHHHHHHHHHHH
Confidence 44444444 2456666555543 3899999999998888
No 94
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=95.04 E-value=0.59 Score=37.13 Aligned_cols=151 Identities=11% Similarity=0.095 Sum_probs=93.5
Q ss_pred hcCcHHHHHHHHhcC----------CChHHHHHHHHHHHHhhCCchhHHHHH-hcCCHHHHHHHhcCCCHHHHHHHHHHH
Q 025930 69 TQGGIGLLSTTAANA----------EDPQTLRMVAGAIANLCGNDKLQLKLR-GEGGIKALLGMVRCGHPDVLAQVARGI 137 (246)
Q Consensus 69 ~~g~i~~L~~ll~~~----------~~~~~~~~a~~aL~~L~~~~~~~~~l~-~~g~i~~L~~ll~~~~~~~~~~a~~~L 137 (246)
..+|+..|+..+... .+....-.++.+|+.+.++......+. ..+++..+...+.++++.++..++..|
T Consensus 41 ~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL 120 (233)
T 2f31_A 41 GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLL 120 (233)
T ss_dssp HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 467888888776531 134556678899999998887777766 456889999999999999999999999
Q ss_pred HHhhccccc-----ccccCChhhhHHHHhCCChHHHHHcccCC-ChhHHHHHHHHHHHhccCc---hh----HHHHHhCC
Q 025930 138 ANFAKCESR-----ASTQGTKTGRSLLIDDGALPWIVQNSNNE-ASPIRRHIELALCHLAQHE---VN----AKDMISGG 204 (246)
Q Consensus 138 ~nL~~~~~~-----~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~-~~~v~~~a~~aL~~La~~~---~~----~~~i~~~g 204 (246)
.-+|..++. .+...-+.. +...+..-+..++..++.+ +.+.+..+...+-.+..++ +. |..+...|
T Consensus 121 ~~lc~~~~~~G~~~~VL~Al~~~-~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~G 199 (233)
T 2f31_A 121 SALCILPQPEDMNERVLEAMTER-AEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLG 199 (233)
T ss_dssp HHHHTCSSSSCHHHHHHHHHHHH-HHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTT
T ss_pred HHHHhCCCCCChHHHHHHHHHHH-HHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
Confidence 988875310 000000111 1123344577888888744 4556555555555554433 22 44555666
Q ss_pred cHHHHHHHHhcCCHHHH
Q 025930 205 ALWELVRISRDCSREDI 221 (246)
Q Consensus 205 ~i~~L~~ll~~~~~~~~ 221 (246)
..+.+-.+ +..+++++
T Consensus 200 l~~il~~l-~~~~~~~L 215 (233)
T 2f31_A 200 LHQVLQEL-REIENEDM 215 (233)
T ss_dssp HHHHHHHH-HHCCCHHH
T ss_pred hHHHHHHH-hccCCHHH
Confidence 66555444 44443433
No 95
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=94.92 E-value=0.32 Score=39.40 Aligned_cols=146 Identities=13% Similarity=0.132 Sum_probs=88.6
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhcCC---c-chHHHH--HhcCcHHHHHHH-HhcCCChHHHHHHHHHHHHhhCCchh
Q 025930 33 SLLMLLGSSEDETIHRVAAGAIANLAMN---E-TNQELI--MTQGGIGLLSTT-AANAEDPQTLRMVAGAIANLCGNDKL 105 (246)
Q Consensus 33 ~Li~ll~~~~~~~~~~~a~~~L~~la~~---~-~~~~~i--~~~g~i~~L~~l-l~~~~~~~~~~~a~~aL~~L~~~~~~ 105 (246)
.+-..+... +..++..++.++..++.. . ..+... .-...++.|+.- +.+ ..+.++..+..++..++.....
T Consensus 59 ~lkk~l~Ds-N~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~-~k~~~~~~a~~~l~~~~~~~~~ 136 (278)
T 4ffb_C 59 LFAQYITDS-NVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTS-SRATTKTQSMSCILSLCGLDTS 136 (278)
T ss_dssp HHHHHTTCS-SHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSC-CCHHHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHhccc-hHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcC-ccHHHHHHHHHHHHHHHHhcCc
Confidence 344455554 788888888888887643 1 112111 112345555543 444 4577887888888776522211
Q ss_pred HHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhh-hHHHHhCCChHHHHHcccCCChhHHHHHH
Q 025930 106 QLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTG-RSLLIDDGALPWIVQNSNNEASPIRRHIE 184 (246)
Q Consensus 106 ~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~-~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~ 184 (246)
... .++.+...+.+.++.++..++..|..+...- +.... ..... ..+++.+..++.+.++.||..|.
T Consensus 137 ~~~-----~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~f------g~~~~~~k~~l-~~i~~~l~k~l~d~~~~VR~aA~ 204 (278)
T 4ffb_C 137 ITQ-----SVELVIPFFEKKLPKLIAAAANCVYELMAAF------GLTNVNVQTFL-PELLKHVPQLAGHGDRNVRSQTM 204 (278)
T ss_dssp SHH-----HHHHHGGGGGCSCHHHHHHHHHHHHHHHHHH------TTTTCCHHHHH-HHHGGGHHHHHTCSSHHHHHHHH
T ss_pred HHH-----HHHHHHHHHhccCHHHHHHHHHHHHHHHHHh------CCCcCCchhHH-HHHHHHHHHHHhCCcHHHHHHHH
Confidence 111 2455667788899999999998888765310 11100 01111 12456777888999999999999
Q ss_pred HHHHHhcc
Q 025930 185 LALCHLAQ 192 (246)
Q Consensus 185 ~aL~~La~ 192 (246)
.++..+-.
T Consensus 205 ~l~~~ly~ 212 (278)
T 4ffb_C 205 NLIVEIYK 212 (278)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 99988854
No 96
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=94.61 E-value=0.46 Score=46.13 Aligned_cols=133 Identities=9% Similarity=0.011 Sum_probs=83.6
Q ss_pred CCHHHHHHHHHHHHHhcCCc--c-hHHHHHhcCcHHHHHHHHhcCC--ChH--HHHHHHHHHHHhh----CCchhHHHHH
Q 025930 42 EDETIHRVAAGAIANLAMNE--T-NQELIMTQGGIGLLSTTAANAE--DPQ--TLRMVAGAIANLC----GNDKLQLKLR 110 (246)
Q Consensus 42 ~~~~~~~~a~~~L~~la~~~--~-~~~~i~~~g~i~~L~~ll~~~~--~~~--~~~~a~~aL~~L~----~~~~~~~~l~ 110 (246)
.+...++.++.+++.++... + ....+.+ .++.|+.++.... |+. ++..+++++...+ .+++.-.
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~--vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~--- 539 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVT--VIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR--- 539 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHH--HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHH---
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHH--HHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHH---
Confidence 46888888999999998773 2 2333433 6778888776321 233 3345567776655 2222211
Q ss_pred hcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHh------CCChHHHHH----cccCCChhHH
Q 025930 111 GEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLID------DGALPWIVQ----NSNNEASPIR 180 (246)
Q Consensus 111 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~------~g~i~~Lv~----ll~~~~~~v~ 180 (246)
.++..|+..+..+++.++..|+.++.++| .+++..+.. ...++.+++ ....-+++.+
T Consensus 540 --~vl~~L~~~l~~~~~~v~~~A~~al~~l~-----------~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~ 606 (1023)
T 4hat_C 540 --TVILKLFEFMHETHEGVQDMACDTFIKIV-----------QKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQV 606 (1023)
T ss_dssp --HHHHHHHHHTTCSCHHHHHHHHHHHHHHH-----------HHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHH
T ss_pred --HHHHHHHHHhhcCCHHHHHHHHHHHHHHH-----------HHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHH
Confidence 23444666666677899999999999999 366666653 123444443 3333466777
Q ss_pred HHHHHHHHHhcc
Q 025930 181 RHIELALCHLAQ 192 (246)
Q Consensus 181 ~~a~~aL~~La~ 192 (246)
.....++..+..
T Consensus 607 ~~lyeai~~vi~ 618 (1023)
T 4hat_C 607 HTFYKACGIIIS 618 (1023)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 778888888855
No 97
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=94.15 E-value=1.3 Score=36.77 Aligned_cols=136 Identities=13% Similarity=0.121 Sum_probs=82.1
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHh---cCCChHHHHHHHHHHHHhhC----Cchh
Q 025930 33 SLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAA---NAEDPQTLRMVAGAIANLCG----NDKL 105 (246)
Q Consensus 33 ~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~---~~~~~~~~~~a~~aL~~L~~----~~~~ 105 (246)
.++..+.....+..+..++++++|+-.++..+..+... ...++..+. ...+..++..++..+.|++. ..+.
T Consensus 151 ~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~--~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~ 228 (304)
T 3ebb_A 151 HLINLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQ--RESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNI 228 (304)
T ss_dssp HHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHHHHHT--HHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCH
T ss_pred HHHHhcCCCCChHHHHHHHHHHHHccCCchhHHHHHHH--HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCc
Confidence 34444544445667888999999999998888877752 233333332 22578899899999999981 1111
Q ss_pred HHHHHhcCCHHHHHHHhc-CCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccC-CChhHHH
Q 025930 106 QLKLRGEGGIKALLGMVR-CGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNN-EASPIRR 181 (246)
Q Consensus 106 ~~~l~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~-~~~~v~~ 181 (246)
....+ .+..+..++. ..+++....++.+|++|.. .+.+.++.....|+-..+-..... ..+++.+
T Consensus 229 -~~~~~--ll~~l~~il~~~~d~EalyR~LvALGtL~~--------~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~ 295 (304)
T 3ebb_A 229 -EGKAQ--CLSLISTILEVVQDLEATFRLLVALGTLIS--------DDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSE 295 (304)
T ss_dssp -HHHHH--HHHHHHHHHTTCCCHHHHHHHHHHHHHHHT--------TCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHH
T ss_pred -hHHHH--HHHHHHHHHhccCCHHHHHHHHHHHHHHHh--------CChhHHHHHHHcCHHHHHHHHHhCCCchhHHH
Confidence 11111 3444445554 4588999999999999995 334545444444544444444443 2344433
No 98
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=93.95 E-value=2.1 Score=34.73 Aligned_cols=171 Identities=12% Similarity=0.052 Sum_probs=104.7
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHh-cCc-HHHHHHHHhcCCChHHHHHHHHHHHHhhC-----CchhH
Q 025930 34 LLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMT-QGG-IGLLSTTAANAEDPQTLRMVAGAIANLCG-----NDKLQ 106 (246)
Q Consensus 34 Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~-~g~-i~~L~~ll~~~~~~~~~~~a~~aL~~L~~-----~~~~~ 106 (246)
+...|-+. |...+..|+..|..... .+.+.+.. .+. ++++.--+.+ .+..+...++.+|..+.. +....
T Consensus 51 ~~~~lfs~-d~k~~~~ale~L~~~l~--~~~~~~~~~lDll~kw~~lr~~d-~N~~v~~~~L~~L~~l~~~l~~~~y~~~ 126 (266)
T 2of3_A 51 LMSQLFHK-DFKQHLAALDSLVRLAD--TSPRSLLSNSDLLLKWCTLRFFE-TNPAALIKVLELCKVIVELIRDTETPMS 126 (266)
T ss_dssp HHHHHTCS-CHHHHHHHHHHHHHHHH--HCHHHHHHTHHHHHHHHHHHTTS-CCHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHhcCC-CHHHHHHHHHHHHHHhh--hChHHHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHHHhccccch
Confidence 33344443 55545556666665422 22333322 111 2233222234 578888788888877641 11111
Q ss_pred HHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhc-ccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHH
Q 025930 107 LKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAK-CESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIEL 185 (246)
Q Consensus 107 ~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~-~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~ 185 (246)
..-. .-.+|.|+.-+.+..+.++..+-.++..++. ++ + ..+++.++.-+++.+..+|..++.
T Consensus 127 ~~ea-~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~--------~--------~~v~~~l~~g~ksKN~R~R~e~l~ 189 (266)
T 2of3_A 127 QEEV-SAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG--------P--------LKMTPMLLDALKSKNARQRSECLL 189 (266)
T ss_dssp HHHH-HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC--------H--------HHHHHHHHHGGGCSCHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC--------H--------HHHHHHHHHHHccCCHHHHHHHHH
Confidence 1100 1257889999988888899888888877763 11 1 346778888888889999999999
Q ss_pred HHHHhccCchhHHHHHhCCcH---HHHHHHHhcCCHHHHHHHHHHHHc
Q 025930 186 ALCHLAQHEVNAKDMISGGAL---WELVRISRDCSREDIRTLAHRTLT 230 (246)
Q Consensus 186 aL~~La~~~~~~~~i~~~g~i---~~L~~ll~~~~~~~~~~~A~~~L~ 230 (246)
.+..+-...... ...++ +.+..++. +.+..+|.+|..++.
T Consensus 190 ~l~~li~~~G~~----~~~~l~~~~~ia~ll~-D~d~~VR~aAl~~lv 232 (266)
T 2of3_A 190 VIEYYITNAGIS----PLKSLSVEKTVAPFVG-DKDVNVRNAAINVLV 232 (266)
T ss_dssp HHHHHHHHHCSG----GGGGGCHHHHHGGGGG-CSSHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCC----ccccccchHHHHHHHc-CCCHHHHHHHHHHHH
Confidence 998884321111 23477 88888887 566778999998886
No 99
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=93.07 E-value=2.7 Score=33.24 Aligned_cols=154 Identities=16% Similarity=0.109 Sum_probs=95.8
Q ss_pred HhCCHHHHHHHhcCC----------CCHHHHHHHHHHHHHhcCCcchHHHHHhc-CcHHHHHHHHhcCCChHHHHHHHHH
Q 025930 27 EAGGLTSLLMLLGSS----------EDETIHRVAAGAIANLAMNETNQELIMTQ-GGIGLLSTTAANAEDPQTLRMVAGA 95 (246)
Q Consensus 27 ~~g~i~~Li~ll~~~----------~~~~~~~~a~~~L~~la~~~~~~~~i~~~-g~i~~L~~ll~~~~~~~~~~~a~~a 95 (246)
..||+..|++.|..- .+...+..++.+|..+.........+.+. +++..+...+.+ +++.++..++..
T Consensus 41 ~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s-~~~~~r~~~leL 119 (233)
T 2f31_A 41 GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDP-AVPNMMIDAAKL 119 (233)
T ss_dssp HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCT-TSHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCC-CCchHHHHHHHH
Confidence 468888888887641 13445666899999998887777777764 456666666655 678888899999
Q ss_pred HHHhhCCch--h-HHHHHh----------cCCHHHHHHHhc-CCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHh
Q 025930 96 IANLCGNDK--L-QLKLRG----------EGGIKALLGMVR-CGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLID 161 (246)
Q Consensus 96 L~~L~~~~~--~-~~~l~~----------~g~i~~L~~ll~-~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~ 161 (246)
|..+|..++ + ...+.+ ..-...++..++ +.+.+.+..+...+-.+...+ ++...--+.|..+..
T Consensus 120 L~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~--~dl~~R~~lR~ef~~ 197 (233)
T 2f31_A 120 LSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPA--EELDFRVHIRSELMR 197 (233)
T ss_dssp HHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCC--CCHHHHHHHHHHHHH
Confidence 998884332 3 333321 224556777776 345666666666665565432 000001345666777
Q ss_pred CCChHHHHHcccCCChhHHHHH
Q 025930 162 DGALPWIVQNSNNEASPIRRHI 183 (246)
Q Consensus 162 ~g~i~~Lv~ll~~~~~~v~~~a 183 (246)
.|..+.+-.+=..+++++..+.
T Consensus 198 ~Gl~~il~~l~~~~~~~L~~Qi 219 (233)
T 2f31_A 198 LGLHQVLQELREIENEDMKVQL 219 (233)
T ss_dssp TTHHHHHHHHHHCCCHHHHHHH
T ss_pred CChHHHHHHHhccCCHHHHHHH
Confidence 7766666555454566665544
No 100
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=92.90 E-value=1.3 Score=35.95 Aligned_cols=130 Identities=8% Similarity=-0.061 Sum_probs=84.0
Q ss_pred CHHHHHHHHHHHHHhcCC---cchHHHHHh-cCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHH
Q 025930 43 DETIHRVAAGAIANLAMN---ETNQELIMT-QGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKAL 118 (246)
Q Consensus 43 ~~~~~~~a~~~L~~la~~---~~~~~~i~~-~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L 118 (246)
+..+...+..+|..+..- .+.+..-.+ .-.+|.|+.-+.+ ..+.+++.+-.++..++.. -- -..+.+.+
T Consensus 100 N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd-~k~~vR~~~r~il~~l~~v-~~-----~~~v~~~l 172 (266)
T 2of3_A 100 NPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGE-AKDNMRTSVRDIVNVLSDV-VG-----PLKMTPML 172 (266)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGC-SSHHHHHHHHHHHHHHHHH-HC-----HHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHHH-CC-----HHHHHHHH
Confidence 666666666666655211 111111011 1147788777776 3467787777777666421 00 11235567
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCCh---HHHHHcccCCChhHHHHHHHHHHHhcc
Q 025930 119 LGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGAL---PWIVQNSNNEASPIRRHIELALCHLAQ 192 (246)
Q Consensus 119 ~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i---~~Lv~ll~~~~~~v~~~a~~aL~~La~ 192 (246)
+.-+++.+...+..++..+.++-.. .|.. ..+.+ |.+..++.+.|..||..|..++..+-.
T Consensus 173 ~~g~ksKN~R~R~e~l~~l~~li~~------~G~~-------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 173 LDALKSKNARQRSECLLVIEYYITN------AGIS-------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK 236 (266)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHHHH------HCSG-------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHccCCHHHHHHHHHHHHHHHHh------cCCC-------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 7778899999999999998887632 1222 23468 999999999999999999999987754
No 101
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=92.59 E-value=3.5 Score=35.04 Aligned_cols=129 Identities=12% Similarity=0.101 Sum_probs=91.7
Q ss_pred HHHHHHHhhCCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHc
Q 025930 92 VAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQN 171 (246)
Q Consensus 92 a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~l 171 (246)
+...|.-|-++.....-++..+|+..+......++.++....+..|...+- .......- =...+|++++.
T Consensus 263 ~FDLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSD---------aksL~~t~-L~e~LPFi~~~ 332 (619)
T 3c2g_A 263 TFDLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSD---------AKALAKTP-LENILPFLLRL 332 (619)
T ss_dssp HHHHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTT---------CGGGGTSC-CTTHHHHHHHH
T ss_pred HHHHHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecc---------hHHHhhcc-ccccchHHHHH
Confidence 334444444666666789999999999999999999999999999998871 11111111 13458888887
Q ss_pred cc-CCChhHHHHHHHHHHHhccCc-hhHHHHHhCCcHHHHHHHHhcC------CHHHHHHHHHHHHc
Q 025930 172 SN-NEASPIRRHIELALCHLAQHE-VNAKDMISGGALWELVRISRDC------SREDIRTLAHRTLT 230 (246)
Q Consensus 172 l~-~~~~~v~~~a~~aL~~La~~~-~~~~~i~~~g~i~~L~~ll~~~------~~~~~~~~A~~~L~ 230 (246)
+. ++++++-....+.|.|...+. ..++..+..|+++.|-..+... .+..+++.|.+.+-
T Consensus 333 i~~h~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~Iic 399 (619)
T 3c2g_A 333 IEIHPDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIIC 399 (619)
T ss_dssp HHHCCCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHH
T ss_pred hccCCCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHH
Confidence 74 457889999999999996654 4566667899999998877532 34556666665543
No 102
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=92.00 E-value=2 Score=37.86 Aligned_cols=126 Identities=13% Similarity=0.111 Sum_probs=86.2
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHHHHh
Q 025930 33 SLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRG 111 (246)
Q Consensus 33 ~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~ 111 (246)
.++..-+. ++..++-|+..|...-.+ ++.++. ++..++.++.+ +|..++.+|...|-.+|.+ ++..++
T Consensus 33 ~Il~~~kg--~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcED-ed~~IR~qaik~Lp~~ck~-~~i~ki-- 101 (507)
T 3u0r_A 33 VILDGVKG--GTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCED-EDVSIRRQAIKELPQFATG-ENLPRV-- 101 (507)
T ss_dssp HHHHGGGS--CHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTC-SSHHHHHHHHHHGGGGCCT-TCHHHH--
T ss_pred HHHHhcCC--CHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhc-ccHHHHHHHHHhhHHHhhh-hhhhhH--
Confidence 34444333 567788899999988766 766655 36778899988 6899999999999999977 555554
Q ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHH
Q 025930 112 EGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALC 188 (246)
Q Consensus 112 ~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~ 188 (246)
+++|+.+|..+++.-...+-.+|..+-..+ + .+.+..+...+..+++.+|+.++..|.
T Consensus 102 ---aDvL~QlLqtdd~~E~~~V~~sL~sllk~D--------p--------k~tl~~lf~~i~~~~e~~Rer~lkFi~ 159 (507)
T 3u0r_A 102 ---ADILTQLLQTDDSAEFNLVNNALLSIFKMD--------A--------KGTLGGLFSQILQGEDIVRERAIKFLS 159 (507)
T ss_dssp ---HHHHHHHTTCCCHHHHHHHHHHHHHHHHHC--------H--------HHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred ---HHHHHHHHhccchHHHHHHHHHHHHHHhcC--------h--------HHHHHHHHHHHcccchHHHHHHHHHHH
Confidence 678999999888776666666666665321 1 133444444333456677777666664
No 103
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=91.81 E-value=4.6 Score=34.35 Aligned_cols=126 Identities=13% Similarity=0.188 Sum_probs=87.8
Q ss_pred HHHhcCC-cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhc-CCCHHHHH
Q 025930 54 IANLAMN-ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVR-CGHPDVLA 131 (246)
Q Consensus 54 L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~-~~~~~~~~ 131 (246)
|.+|-.+ .+.-+-+++.+|+..+.....- .+.++....+..|...+........- -...+|-++..+. +++.++..
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinY-pN~~l~RaG~KLLLQVSDaksL~~t~-L~e~LPFi~~~i~~h~eDdvvY 343 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQY-PNNDLIRAGCKLLLQVSDAKALAKTP-LENILPFLLRLIEIHPDDEVIY 343 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHTTS-SCHHHHHHHHHHHHHHTTCGGGGTSC-CTTHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHhcccccccceeecccceeEEEEeec-CCcHHHHhhhheeeeecchHHHhhcc-ccccchHHHHHhccCCCcceEE
Confidence 4455555 4556889999999999888886 67788878888888776433221111 1224666666665 78899999
Q ss_pred HHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCC-------ChhHHHHHHHHHHH
Q 025930 132 QVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNE-------ASPIRRHIELALCH 189 (246)
Q Consensus 132 ~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~-------~~~v~~~a~~aL~~ 189 (246)
...+.|.|... .....++.-+..|+++.|....... +..-++.+|+.++|
T Consensus 344 SGTGFLSNVVA--------HKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN 400 (619)
T 3c2g_A 344 SGTGFLSNVVA--------HKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICN 400 (619)
T ss_dssp HHHHHHHHHST--------TCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHH
T ss_pred ecchHHHHHHh--------cccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHH
Confidence 99999999885 3467888888999999987765332 33445556665554
No 104
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=91.81 E-value=2.1 Score=34.04 Aligned_cols=142 Identities=11% Similarity=0.120 Sum_probs=94.0
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhC--CchhHHHHH
Q 025930 33 SLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCG--NDKLQLKLR 110 (246)
Q Consensus 33 ~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~--~~~~~~~l~ 110 (246)
++...|-..+..+++..|+..|+.+ .. .. ..++.+...+...++=.+++.++.++..++. +++-
T Consensus 74 ~la~~L~~~~~deVR~~Av~lLg~~-~~--~~------~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~----- 139 (240)
T 3l9t_A 74 KLAFLAYQSDVYQVRMYAVFLFGYL-SK--DK------EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK----- 139 (240)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHT-TT--SH------HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT-----
T ss_pred HHHHHHHhCcchHHHHHHHHHHHhc-cC--cH------HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH-----
Confidence 4444444444567788888888877 21 11 1344444434444667899999999988873 3331
Q ss_pred hcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHh
Q 025930 111 GEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHL 190 (246)
Q Consensus 111 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~L 190 (246)
.++.+.....+++..++..|...++.-+..+ ....++ .-.+|.|-.+..+++.-||+...++|..+
T Consensus 140 ---~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~---~~k~dp--------~~ll~iL~~L~~D~s~yVrKSVan~LrD~ 205 (240)
T 3l9t_A 140 ---ALPIIDEWLKSSNLHTRRAATEGLRIWTNRP---YFKENP--------NEAIRRIADLKEDVSEYVRKSVGNALRDI 205 (240)
T ss_dssp ---THHHHHHHHHCSSHHHHHHHHHHTCSGGGST---TTTTCH--------HHHHHHHHTTTTCSCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHhcCCCHHHHHHHHHhhHHHhccc---hhhcCH--------HHHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence 5778888889999999999987766533210 000111 12577777788878889999999999999
Q ss_pred cc-CchhHHHHHh
Q 025930 191 AQ-HEVNAKDMIS 202 (246)
Q Consensus 191 a~-~~~~~~~i~~ 202 (246)
+. +|+-...+++
T Consensus 206 SK~~Pd~V~~~~~ 218 (240)
T 3l9t_A 206 SKKFPDLVKIELK 218 (240)
T ss_dssp HTTCHHHHHHHHH
T ss_pred hhhCHHHHHHHHH
Confidence 98 6666555554
No 105
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=90.89 E-value=3.8 Score=38.97 Aligned_cols=132 Identities=9% Similarity=-0.038 Sum_probs=83.9
Q ss_pred CCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhc--CCChHHHHHHHHHHHHhhCC-chhHHHHHhcCCHHHH
Q 025930 42 EDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAAN--AEDPQTLRMVAGAIANLCGN-DKLQLKLRGEGGIKAL 118 (246)
Q Consensus 42 ~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~--~~~~~~~~~a~~aL~~L~~~-~~~~~~l~~~g~i~~L 118 (246)
.+...++.++.+++.++..-... +...++.++..+.. .+++.++..+++++..++.. ....+ .. ..+++.+
T Consensus 461 ~~w~~~eaal~al~~i~~~~~~~----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~-~l-~~vl~~l 534 (963)
T 2x19_B 461 YSWQHTEALLYGFQSIAETIDVN----YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPV-MI-NSVLPLV 534 (963)
T ss_dssp CCHHHHHHHHHHHHHHTTSCCSS----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHH-HH-TTTHHHH
T ss_pred CchHHHHHHHHHHHHHHhhcCch----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHH-HH-HHHHHHH
Confidence 47777888999999998762110 01223444443321 14688999999999988732 11222 22 3578888
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhC--CChHHHHHcccCC--ChhHHHHHHHHHHHhcc
Q 025930 119 LGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDD--GALPWIVQNSNNE--ASPIRRHIELALCHLAQ 192 (246)
Q Consensus 119 ~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~--g~i~~Lv~ll~~~--~~~v~~~a~~aL~~La~ 192 (246)
+..|.+ +.++..|+.++.+++. +.+..+... ..++.|..++..+ +.+.+.....+++.++.
T Consensus 535 ~~~l~~--~~V~~~A~~al~~l~~-----------~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~ 599 (963)
T 2x19_B 535 LHALGN--PELSVSSVSTLKKICR-----------ECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLS 599 (963)
T ss_dssp HHHTTC--GGGHHHHHHHHHHHHH-----------HTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHhCC--chHHHHHHHHHHHHHH-----------HHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHh
Confidence 888854 7899999999999993 333333211 1233444455542 56888888999999875
No 106
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=90.54 E-value=1.4 Score=42.32 Aligned_cols=134 Identities=7% Similarity=0.008 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhc-----CCChHHHHHHHHHHHHhhCCchhHHHHHhc-----CC
Q 025930 45 TIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAAN-----AEDPQTLRMVAGAIANLCGNDKLQLKLRGE-----GG 114 (246)
Q Consensus 45 ~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~-----~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~-----g~ 114 (246)
..+.+|...|..++..-+ +.+.. ..++.+...+.+ ..+-..++.|+.++..++........-... ..
T Consensus 376 s~R~aa~~~L~~l~~~~~--~~v~~-~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l 452 (960)
T 1wa5_C 376 TRRRACTDFLKELKEKNE--VLVTN-IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNV 452 (960)
T ss_dssp CHHHHHHHHHHHHHHHCH--HHHHH-HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCH
T ss_pred CcHHHHHHHHHHHHHHcc--hhHHH-HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccH
Confidence 356667777777775532 12211 123333344441 234567888999999887321100000000 11
Q ss_pred HH----HHHHHhcCC---CHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHH
Q 025930 115 IK----ALLGMVRCG---HPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELAL 187 (246)
Q Consensus 115 i~----~L~~ll~~~---~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL 187 (246)
.+ .++..+.++ ++-++..++.++..++.. ...... ..+++.++..+.++++.|+..|+.+|
T Consensus 453 ~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~-----------~~~~~l-~~~l~~l~~~L~d~~~~V~~~A~~Al 520 (960)
T 1wa5_C 453 VDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQ-----------LTKAQL-IELMPILATFLQTDEYVVYTYAAITI 520 (960)
T ss_dssp HHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGG-----------SCHHHH-HHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhh-----------CCHHHH-HHHHHHHHHHhCCCChhHHHHHHHHH
Confidence 11 223334555 788999999999999842 111122 24678888888888899999999999
Q ss_pred HHhccC
Q 025930 188 CHLAQH 193 (246)
Q Consensus 188 ~~La~~ 193 (246)
.+++..
T Consensus 521 ~~~~~~ 526 (960)
T 1wa5_C 521 EKILTI 526 (960)
T ss_dssp HHHTTC
T ss_pred HHHHhc
Confidence 999873
No 107
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=90.35 E-value=7.8 Score=33.08 Aligned_cols=150 Identities=11% Similarity=0.097 Sum_probs=92.1
Q ss_pred cCcHHHHHHHHhcC----------CChHHHHHHHHHHHHhhCCchhHHHHH-hcCCHHHHHHHhcCCCHHHHHHHHHHHH
Q 025930 70 QGGIGLLSTTAANA----------EDPQTLRMVAGAIANLCGNDKLQLKLR-GEGGIKALLGMVRCGHPDVLAQVARGIA 138 (246)
Q Consensus 70 ~g~i~~L~~ll~~~----------~~~~~~~~a~~aL~~L~~~~~~~~~l~-~~g~i~~L~~ll~~~~~~~~~~a~~~L~ 138 (246)
.+|+..|+..+... .+....-.++.+|+.+.++......+. ..+++..+...+.++++.++..++..|.
T Consensus 46 ~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~ 125 (386)
T 2bnx_A 46 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 125 (386)
T ss_dssp HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 57888887776421 134556678899999998887777766 4568899999998899999999999998
Q ss_pred Hhhcccccc-----cccCChhhhHHHHhCCChHHHHHcccCC-ChhHHHHHHHHHHHhccCch---h----HHHHHhCCc
Q 025930 139 NFAKCESRA-----STQGTKTGRSLLIDDGALPWIVQNSNNE-ASPIRRHIELALCHLAQHEV---N----AKDMISGGA 205 (246)
Q Consensus 139 nL~~~~~~~-----~~~~~~~~~~~l~~~g~i~~Lv~ll~~~-~~~v~~~a~~aL~~La~~~~---~----~~~i~~~g~ 205 (246)
-+|..++.. +...-+. .....+..-+..++..+..+ +.+.+..+...+-.+..+++ . |..+...|.
T Consensus 126 alc~~~~~~G~~~~VL~Al~~-~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL 204 (386)
T 2bnx_A 126 ALCILPQPEDMNERVLEAMTE-RAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGL 204 (386)
T ss_dssp HHHTCCSSTTHHHHHHHHHHH-HHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTH
T ss_pred HHHcCCCCCChHHHHHHHHHH-HHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCh
Confidence 888753100 0000011 11223444577888888744 45555555555555544332 2 455556666
Q ss_pred HHHHHHHHhcCCHHHH
Q 025930 206 LWELVRISRDCSREDI 221 (246)
Q Consensus 206 i~~L~~ll~~~~~~~~ 221 (246)
.+.+- -++....+.+
T Consensus 205 ~~il~-~Lr~~~~~~L 219 (386)
T 2bnx_A 205 HQVLQ-ELREIENEDM 219 (386)
T ss_dssp HHHHH-HHTTCCCHHH
T ss_pred HHHHH-HHhccCChhH
Confidence 66554 4444443333
No 108
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=89.56 E-value=9.1 Score=32.65 Aligned_cols=155 Identities=16% Similarity=0.114 Sum_probs=98.8
Q ss_pred HHHHHhCCHHHHHHHhcC----------CCCHHHHHHHHHHHHHhcCCcchHHHHHhc-CcHHHHHHHHhcCCChHHHHH
Q 025930 23 EKIVEAGGLTSLLMLLGS----------SEDETIHRVAAGAIANLAMNETNQELIMTQ-GGIGLLSTTAANAEDPQTLRM 91 (246)
Q Consensus 23 ~~i~~~g~i~~Li~ll~~----------~~~~~~~~~a~~~L~~la~~~~~~~~i~~~-g~i~~L~~ll~~~~~~~~~~~ 91 (246)
+.++ .+|+..|+..|.. ..+...+..++.+|..+..+......+.+. +++..|...+.+ .++.++..
T Consensus 104 ~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s-~~~~~~~~ 181 (383)
T 3eg5_B 104 QTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDP-AVPNMMID 181 (383)
T ss_dssp HHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCT-TSHHHHHH
T ss_pred HHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCC-CchHHHHH
Confidence 4455 6788999988852 124456677899999998887777777654 557777777766 57889999
Q ss_pred HHHHHHHhhCCc--hh-HHHHH----------hcCCHHHHHHHhcC-CCHHHHHHHHHHHHHhhccc-ccccccCChhhh
Q 025930 92 VAGAIANLCGND--KL-QLKLR----------GEGGIKALLGMVRC-GHPDVLAQVARGIANFAKCE-SRASTQGTKTGR 156 (246)
Q Consensus 92 a~~aL~~L~~~~--~~-~~~l~----------~~g~i~~L~~ll~~-~~~~~~~~a~~~L~nL~~~~-~~~~~~~~~~~~ 156 (246)
++..|..+|..+ ++ ...+. +..-...++..+++ .+.+.+..+...+-.+.... +... .-..|
T Consensus 182 aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~---R~~lR 258 (383)
T 3eg5_B 182 AAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF---RVHIR 258 (383)
T ss_dssp HHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHH---HHHHH
T ss_pred HHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHH---HHHHH
Confidence 999999999443 33 33332 22346677888876 56777776666666665432 1111 13446
Q ss_pred HHHHhCCChHHHHHcccCCChhHHHH
Q 025930 157 SLLIDDGALPWIVQNSNNEASPIRRH 182 (246)
Q Consensus 157 ~~l~~~g~i~~Lv~ll~~~~~~v~~~ 182 (246)
..+...|..+.+-.+=..+++++...
T Consensus 259 ~ef~~~Gl~~il~~lr~~~~~~L~~Q 284 (383)
T 3eg5_B 259 SELMRLGLHQVLQELREIENEDMKVQ 284 (383)
T ss_dssp HHHHHTTHHHHHHHHTTSCCHHHHHH
T ss_pred HHHHHCChHHHHHHHhcCCChhHHHH
Confidence 66667887666665444345554443
No 109
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=89.21 E-value=6 Score=37.83 Aligned_cols=167 Identities=9% Similarity=-0.004 Sum_probs=88.6
Q ss_pred HHHhcCC--CCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCc--------h
Q 025930 35 LMLLGSS--EDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGND--------K 104 (246)
Q Consensus 35 i~ll~~~--~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~--------~ 104 (246)
+..++++ ..+.++..|+++++..+..- ..+.+. ..++.++..+.+ ++..++..|+.||.+++... +
T Consensus 461 ~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~~l~--~~l~~l~~~L~d-~~~~V~~~A~~Al~~~~~~~~~~~~~~~~ 536 (960)
T 1wa5_C 461 APDLTSNNIPHIILRVDAIKYIYTFRNQL-TKAQLI--ELMPILATFLQT-DEYVVYTYAAITIEKILTIRESNTSPAFI 536 (960)
T ss_dssp HHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHHHHH--HHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTCBSCSSSCCBS
T ss_pred HHHhcCCCCCCceehHHHHHHHHHHHhhC-CHHHHH--HHHHHHHHHhCC-CChhHHHHHHHHHHHHHhccccccccccc
Confidence 3344553 27888999999999998752 222222 246777777776 46889999999999998531 1
Q ss_pred -hHHHHHh--cCCHHHHHHHhcCCC---HH--HHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcc----
Q 025930 105 -LQLKLRG--EGGIKALLGMVRCGH---PD--VLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNS---- 172 (246)
Q Consensus 105 -~~~~l~~--~g~i~~L~~ll~~~~---~~--~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll---- 172 (246)
.+..+.. ...++.|+.++.... +. ....+..++..++..-. ......-.. .++.|...+
T Consensus 537 ~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~----~~~~p~~~~-----l~~~L~~~l~~~~ 607 (960)
T 1wa5_C 537 FHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSE----DSIQPLFPQ-----LLAQFIEIVTIMA 607 (960)
T ss_dssp SCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHT----TTTGGGHHH-----HHHHHHHHHHHHT
T ss_pred ccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHH----HhhhhHHHH-----HHHHHHHHHHHHH
Confidence 1222221 124555566665531 11 12344444444432100 000011111 223333332
Q ss_pred c-CCChhHHHHHHHHHHHhccC--chhHHHHHhCCcHHHHHHHHhc
Q 025930 173 N-NEASPIRRHIELALCHLAQH--EVNAKDMISGGALWELVRISRD 215 (246)
Q Consensus 173 ~-~~~~~v~~~a~~aL~~La~~--~~~~~~i~~~g~i~~L~~ll~~ 215 (246)
+ ++++..+..++.+|..++.. ++....+ .....+.+..++..
T Consensus 608 ~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~-~~~~~p~~~~iL~~ 652 (960)
T 1wa5_C 608 KNPSNPRFTHYTFESIGAILNYTQRQNLPLL-VDSMMPTFLTVFSE 652 (960)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHTSCGGGHHHH-HHHHHHHHHHHHHT
T ss_pred hCCCCcHHHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHHHHHHHh
Confidence 2 33667777788888888653 3332222 23455666666653
No 110
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=88.82 E-value=0.37 Score=38.66 Aligned_cols=128 Identities=16% Similarity=0.114 Sum_probs=59.6
Q ss_pred HHHHHhcCCCCHHHHHHHHHH-----HHHhcCC--cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchh
Q 025930 33 SLLMLLGSSEDETIHRVAAGA-----IANLAMN--ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKL 105 (246)
Q Consensus 33 ~Li~ll~~~~~~~~~~~a~~~-----L~~la~~--~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~ 105 (246)
.|..+++++ ++.++..++.. |..+..| ...|......=..+.+..++++ ++..++..++..+ .
T Consensus 78 ~l~~L~~D~-~~~VR~~aA~~L~~~~L~~ll~D~d~~VR~~aA~~l~~~~L~~L~~D-~d~~VR~~aA~~l---~----- 147 (244)
T 1lrv_A 78 ALTPLIRDS-DEVVRRAVAYRLPREQLSALMFDEDREVRITVADRLPLEQLEQMAAD-RDYLVRAYVVQRI---P----- 147 (244)
T ss_dssp GGGGGTTCS-SHHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHHHHSCTGGGGGGTTC-SSHHHHHHHHHHS---C-----
T ss_pred HHHHHccCc-CHHHHHHHHHHCCHHHHHHHHcCCCHHHHHHHHHhCCHHHHHHHHcC-CCHHHHHHHHHhc---C-----
Confidence 344444443 66666665543 2333333 2334443332122344444554 5778887766531 1
Q ss_pred HHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHH-----HhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHH
Q 025930 106 QLKLRGEGGIKALLGMVRCGHPDVLAQVARGIA-----NFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIR 180 (246)
Q Consensus 106 ~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~-----nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~ 180 (246)
.+.+..+++++++.++..++..+. .+.. ..+.+.|......-..+.|..++.+++..||
T Consensus 148 ---------~~~l~~l~~D~d~~VR~~aa~~l~~~ll~~ll~-------D~d~~VR~aaa~~l~~~~L~~Ll~D~d~~VR 211 (244)
T 1lrv_A 148 ---------PGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQ-------DPEPEVRRIVASRLRGDDLLELLHDPDWTVR 211 (244)
T ss_dssp ---------GGGGGGTTTCSCHHHHHHHHHHSCGGGGGGSTT-------CSSHHHHHHHHHHCCGGGGGGGGGCSSHHHH
T ss_pred ---------HHHHHHHHcCCCHHHHHHHHHcCCHHHHHHHHc-------CCCHHHHHHHHHhCCHHHHHHHHcCCCHHHH
Confidence 122334444555555555554311 0000 1223444444444445556666666666666
Q ss_pred HHHHHH
Q 025930 181 RHIELA 186 (246)
Q Consensus 181 ~~a~~a 186 (246)
..+...
T Consensus 212 ~~aa~~ 217 (244)
T 1lrv_A 212 LAAVEH 217 (244)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 666544
No 111
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=88.12 E-value=1.3 Score=40.12 Aligned_cols=181 Identities=12% Similarity=0.038 Sum_probs=106.9
Q ss_pred CCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHH
Q 025930 29 GGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLK 108 (246)
Q Consensus 29 g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~ 108 (246)
.++..|+..+..+ ...++..+.-.|.-+ .+ -... + .+.++.++.-+++ .|.+++..|+.+|..++ .++-...
T Consensus 263 ~IL~qLV~~l~~~-~WEVRHGGLLGLKYL-~D-LL~~-L--d~Vv~aVL~GL~D-~DDDVRAVAAetLiPIA-~p~~l~~ 334 (800)
T 3oc3_A 263 DIIEQLVGFLDSG-DWQVQFSGLIALGYL-KE-FVED-K--DGLCRKLVSLLSS-PDEDIKLLSAELLCHFP-ITDSLDL 334 (800)
T ss_dssp CHHHHHTTGGGCS-CHHHHHHHHHHHHHT-GG-GCCC-H--HHHHHHHHHHTTC-SSHHHHHHHHHHHTTSC-CSSTHHH
T ss_pred HHHHHHHhhcCCC-CeeehhhhHHHHHHH-HH-HHHH-H--HHHHHHHHhhcCC-cccHHHHHHHHHhhhhc-chhhHHH
Confidence 3455555555554 677776666666666 11 0000 1 2345566666676 57889989999998888 2221111
Q ss_pred HHhcCCHHHHHHHhcCC-C-HHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHH
Q 025930 109 LRGEGGIKALLGMVRCG-H-PDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELA 186 (246)
Q Consensus 109 l~~~g~i~~L~~ll~~~-~-~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~a 186 (246)
.+..+-+.|.+. | +.-...+...|..|+.++. ..-.....+|.|-..+.+.-+.||..++.+
T Consensus 335 -----LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~-----------~a~~dp~LVPRL~PFLRHtITSVR~AVL~T 398 (800)
T 3oc3_A 335 -----VLEKCWKNIESEELISVSKTSNLSLLTKIYRENP-----------ELSIPPERLKDIFPCFTSPVPEVRTSILNM 398 (800)
T ss_dssp -----HHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCT-----------TCCCCSGGGGGTGGGGTCSSHHHHHHHHHH
T ss_pred -----HHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCc-----------ccccChHHHHHHHhhhcCCcHHHHHHHHHH
Confidence 233444444432 1 2223456677777776431 000112678999999999999999999999
Q ss_pred HHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHc-----cChhHHHHHHHhh
Q 025930 187 LCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLT-----SSPAFQAEMRRLR 243 (246)
Q Consensus 187 L~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~-----~~~~~~~e~~~~~ 243 (246)
|..+. ....++.+.+-+--+++++++.++.++-. ..|++..-|+-.|
T Consensus 399 L~tfL----------~~~~LRLIFQNILLE~neeIl~lS~~VWk~r~~Ll~~wi~L~MtPIG 450 (800)
T 3oc3_A 399 VKNLS----------EESIDFLVAEVVLIEEKDEIREMAIKLLKKRRDLPKNLILHFMNVIG 450 (800)
T ss_dssp TTTCC----------CHHHHHHHHHHHHHCSCHHHHHHHHHHHHTCSCCCHHHHHHHHHHTT
T ss_pred HHHHH----------hhhHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCcCC
Confidence 98887 11234444444444777888888887764 3455555555444
No 112
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=86.62 E-value=13 Score=31.08 Aligned_cols=144 Identities=6% Similarity=-0.042 Sum_probs=107.2
Q ss_pred CHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh-CCchhHHHHHhcC---CHHHH
Q 025930 43 DETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC-GNDKLQLKLRGEG---GIKAL 118 (246)
Q Consensus 43 ~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~-~~~~~~~~l~~~g---~i~~L 118 (246)
++++--.+-.+|..+..++...+.+.+.+.+-.+++.+.. ++-++-..|...+..+- .+..........+ .....
T Consensus 136 ~~diAl~~G~mLRecir~e~la~~iL~~~~f~~fF~yv~~-~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y 214 (341)
T 1upk_A 136 SPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEM-STFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEY 214 (341)
T ss_dssp STTTHHHHHHHHHHHHTSHHHHHHHHHSGGGGHHHHHTTC-SSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHH
T ss_pred cchhHhHHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcC-CCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHH
Confidence 3444556788899999999888988888888888887776 57888888888888876 4444444444332 35566
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHh----CCChHHHHHcccCCChhHHHHHHHHHHHhccCc
Q 025930 119 LGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLID----DGALPWIVQNSNNEASPIRRHIELALCHLAQHE 194 (246)
Q Consensus 119 ~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~----~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~ 194 (246)
-.++.+++--.+.+++..|+.+-.. +.+...|.. ..-+..++.+|++.+..+|..|-.+.--...+|
T Consensus 215 ~~Ll~S~NYVTkRQSlKLLgelLld---------r~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP 285 (341)
T 1upk_A 215 EKLLHSENYVTKRQSLKLLGELLLD---------RHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANP 285 (341)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHS---------GGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCS
T ss_pred HHHhcCCcchhHHHHHHHHHHHHhC---------chHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCC
Confidence 7788899999999999999998742 345444443 234788999999999999999998887665554
Q ss_pred hh
Q 025930 195 VN 196 (246)
Q Consensus 195 ~~ 196 (246)
..
T Consensus 286 ~K 287 (341)
T 1upk_A 286 NK 287 (341)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 113
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=86.61 E-value=2.4 Score=41.34 Aligned_cols=150 Identities=8% Similarity=-0.047 Sum_probs=90.3
Q ss_pred hhhhHHhHhhccccccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhc---
Q 025930 6 LNTISVKSEDIRAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAAN--- 82 (246)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~--- 82 (246)
+..-+++.+.|.+...+..=.-.-+...|.+.++.+ +......++.+|+|+.... .++.|..++..
T Consensus 417 La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~-~~~~~~~~LkaLGN~g~p~----------~l~~l~~~l~~~~~ 485 (1056)
T 1lsh_A 417 LGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRA-KEEEIVLALKALGNAGQPN----------SIKKIQRFLPGQGK 485 (1056)
T ss_dssp HHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHTCGG----------GHHHHHTTSTTSSS
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHhhccCChh----------HHHHHHHhhcCccc
Confidence 344456666655433221100011233345555665 5555666899999998753 45666555532
Q ss_pred ---CCChHHHHHHHHHHHHhhCC-chhHHHHHhcCCHHHHHHHh--cCCCHHHHHHHHHHHHHhhcccccccccCChhhh
Q 025930 83 ---AEDPQTLRMVAGAIANLCGN-DKLQLKLRGEGGIKALLGMV--RCGHPDVLAQVARGIANFAKCESRASTQGTKTGR 156 (246)
Q Consensus 83 ---~~~~~~~~~a~~aL~~L~~~-~~~~~~l~~~g~i~~L~~ll--~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~ 156 (246)
.....++..|++||+.+... ++. +-+.++.+. ...+++++..|+..|..-. |.
T Consensus 486 ~~~~~~~rvr~aAi~ALr~~~~~~p~~--------v~~il~~i~~n~~e~~EvRiaA~~~Lm~t~-----------P~-- 544 (1056)
T 1lsh_A 486 SLDEYSTRVQAEAIMALRNIAKRDPRK--------VQEIVLPIFLNVAIKSELRIRSCIVFFESK-----------PS-- 544 (1056)
T ss_dssp CCCCSCHHHHHHHHHTTTTGGGTCHHH--------HHHHHHHHHHCTTSCHHHHHHHHHHHHHTC-----------CC--
T ss_pred cccccchHHHHHHHHHHHHhhhhchHH--------HHHHHHHHhcCCCCChHHHHHHHHHHHHHC-----------cC--
Confidence 12346777899999988732 221 224466666 4567888888887776533 11
Q ss_pred HHHHhCCChHHHHHcccC-CChhHHHHHHHHHHHhcc
Q 025930 157 SLLIDDGALPWIVQNSNN-EASPIRRHIELALCHLAQ 192 (246)
Q Consensus 157 ~~l~~~g~i~~Lv~ll~~-~~~~v~~~a~~aL~~La~ 192 (246)
...+..++..+.. .+.+|.......|.+++.
T Consensus 545 -----~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~ 576 (1056)
T 1lsh_A 545 -----VALVSMVAVRLRREPNLQVASFVYSQMRSLSR 576 (1056)
T ss_dssp -----HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred -----HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHh
Confidence 2346667776655 478888888889988876
No 114
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=86.37 E-value=9.2 Score=36.95 Aligned_cols=136 Identities=9% Similarity=-0.037 Sum_probs=75.8
Q ss_pred CCHHHHHHHHHHHHHhcCCcc-h-HHH-HHhcCcHHHHHHHHhcC----CChHHHHHHHHHHHHhhCC-chhHHHHHhcC
Q 025930 42 EDETIHRVAAGAIANLAMNET-N-QEL-IMTQGGIGLLSTTAANA----EDPQTLRMVAGAIANLCGN-DKLQLKLRGEG 113 (246)
Q Consensus 42 ~~~~~~~~a~~~L~~la~~~~-~-~~~-i~~~g~i~~L~~ll~~~----~~~~~~~~a~~aL~~L~~~-~~~~~~l~~~g 113 (246)
.+...++.|+.+++.++..-. . ... +.. .++.+..+.... +++.++..+++++...+.. ....+.+ ..
T Consensus 465 ~~W~~~eaal~algsia~~~~~~~e~~~l~~--v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l--~~ 540 (1049)
T 3m1i_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVT--VIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL--RT 540 (1049)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHH--HHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHH--HH
T ss_pred CCHHHHHHHHHHHHHHhcccCchhhHHHHHH--HHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHH--HH
Confidence 366778889999999986521 1 111 211 333444433211 1233343577887766621 1111111 12
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHh--C----CChHHH----HHcccCCChhHHHHH
Q 025930 114 GIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLID--D----GALPWI----VQNSNNEASPIRRHI 183 (246)
Q Consensus 114 ~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~--~----g~i~~L----v~ll~~~~~~v~~~a 183 (246)
+++.++..+.++++.++..|+.++.+++. +.+..+.. . ..++.+ ..++..-+.+.....
T Consensus 541 vl~~ll~~l~~~~~~V~~~A~~al~~l~~-----------~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~ 609 (1049)
T 3m1i_C 541 VILKLFEFMHETHEGVQDMACDTFIKIVQ-----------KCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTF 609 (1049)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHH-----------HHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHH-----------HHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46677778888889999999999999994 44444431 1 223333 334444455555666
Q ss_pred HHHHHHhcc
Q 025930 184 ELALCHLAQ 192 (246)
Q Consensus 184 ~~aL~~La~ 192 (246)
..++..+..
T Consensus 610 ~eai~~ii~ 618 (1049)
T 3m1i_C 610 YKACGIIIS 618 (1049)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 677777744
No 115
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=85.79 E-value=7.3 Score=37.66 Aligned_cols=174 Identities=9% Similarity=0.073 Sum_probs=99.4
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhC------CchhH
Q 025930 33 SLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCG------NDKLQ 106 (246)
Q Consensus 33 ~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~------~~~~~ 106 (246)
.++..+.++ +...++.|-..|..+...+ ++...+..++.+..+..++..|+..|.+... +++.+
T Consensus 20 ~~l~~~~~p-~~~~r~~Ae~~L~~~~~~p---------~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~ 89 (1049)
T 3m1i_C 20 QVVSTFYQG-SGVQQKQAQEILTKFQDNP---------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHR 89 (1049)
T ss_dssp HHHHHHHHC-CHHHHHHHHHHHHHHHHST---------TGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCHHHH
T ss_pred HHHHHHhCC-ChHHHHHHHHHHHHHHhCc---------hHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCHHHH
Confidence 344444444 4445666777777665444 4566666777655688899999999998761 23333
Q ss_pred HHHHhcCCHHHHHHHhcCC-----CHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHH
Q 025930 107 LKLRGEGGIKALLGMVRCG-----HPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRR 181 (246)
Q Consensus 107 ~~l~~~g~i~~L~~ll~~~-----~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~ 181 (246)
..+ +...+..+...-..+ ++.++.+.+.++..++..+ . ++ ...+.++.|++++. .++..++
T Consensus 90 ~~i-r~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~------~-p~-----~Wp~ll~~L~~~~~-~~~~~~~ 155 (1049)
T 3m1i_C 90 IGI-RNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQE------W-PQ-----NWPEFIPELIGSSS-SSVNVCE 155 (1049)
T ss_dssp HHH-HHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHH------T-TT-----TCTTHHHHHHHHHT-TCHHHHH
T ss_pred HHH-HHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHh------C-cc-----cchHHHHHHHHHHc-cChHHHH
Confidence 333 222333333322111 3567888888888887531 1 11 13457889999886 5666777
Q ss_pred HHHHHHHHhccC-----ch----hH-----HHHHhC--CcHHHHHHHHhcCCHHHHHHHHHHHHc
Q 025930 182 HIELALCHLAQH-----EV----NA-----KDMISG--GALWELVRISRDCSREDIRTLAHRTLT 230 (246)
Q Consensus 182 ~a~~aL~~La~~-----~~----~~-----~~i~~~--g~i~~L~~ll~~~~~~~~~~~A~~~L~ 230 (246)
.++.+|..++.. .+ .| ..+.+. .....+..++.......++..+.+++.
T Consensus 156 ~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~ 220 (1049)
T 3m1i_C 156 NNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLL 220 (1049)
T ss_dssp HHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 788888877631 11 11 223221 122333445544555667777777774
No 116
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=85.17 E-value=5 Score=38.32 Aligned_cols=130 Identities=13% Similarity=0.076 Sum_probs=78.4
Q ss_pred CHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHH---h-cCCChHHHHHHHHHHHHhhCC-chhHHHHHhcCCHHH
Q 025930 43 DETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTA---A-NAEDPQTLRMVAGAIANLCGN-DKLQLKLRGEGGIKA 117 (246)
Q Consensus 43 ~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll---~-~~~~~~~~~~a~~aL~~L~~~-~~~~~~l~~~g~i~~ 117 (246)
+...++.|+.+++.++..-.... ...++.++.++ . +..++.++..+++++..++.. ..+.+.+- .+++.
T Consensus 477 ~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~--~vl~~ 550 (971)
T 2x1g_F 477 HWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIP--PAINL 550 (971)
T ss_dssp CCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHH--HHHHH
T ss_pred cHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHH--HHHHH
Confidence 55567889999999987732111 12334444333 2 123788999999999998821 11111111 23555
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHh--CCChHHHHHcccCC--ChhHHHHHHHHHHHhcc
Q 025930 118 LLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLID--DGALPWIVQNSNNE--ASPIRRHIELALCHLAQ 192 (246)
Q Consensus 118 L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~--~g~i~~Lv~ll~~~--~~~v~~~a~~aL~~La~ 192 (246)
++..+ + +.++..|+.++.+++. +.+..+.. ...+..+..++..+ +.+.+..+..++..++.
T Consensus 551 l~~~l-~--~~v~~~A~~al~~l~~-----------~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~ 615 (971)
T 2x1g_F 551 LVRGL-N--SSMSAQATLGLKELCR-----------DCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMS 615 (971)
T ss_dssp HHHHH-H--SSCHHHHHHHHHHHHH-----------HCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHh-C--hHHHHHHHHHHHHHHH-----------HHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHH
Confidence 66666 2 6789999999999993 44444442 13344555666653 56788888888888865
No 117
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=84.81 E-value=17 Score=30.88 Aligned_cols=152 Identities=16% Similarity=0.113 Sum_probs=95.3
Q ss_pred hCCHHHHHHHhcCC----------CCHHHHHHHHHHHHHhcCCcchHHHHHhc-CcHHHHHHHHhcCCChHHHHHHHHHH
Q 025930 28 AGGLTSLLMLLGSS----------EDETIHRVAAGAIANLAMNETNQELIMTQ-GGIGLLSTTAANAEDPQTLRMVAGAI 96 (246)
Q Consensus 28 ~g~i~~Li~ll~~~----------~~~~~~~~a~~~L~~la~~~~~~~~i~~~-g~i~~L~~ll~~~~~~~~~~~a~~aL 96 (246)
.||+..|+..|..- .+...+..++.+|..+.........+.+. +++..+...+.+ .++.++..++..|
T Consensus 46 ~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s-~~~~~r~~vleLL 124 (386)
T 2bnx_A 46 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDP-AVPNMMIDAAKLL 124 (386)
T ss_dssp HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCT-TSHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCC-CCchHHHHHHHHH
Confidence 67888888877531 13455666899999998887777777664 556666666665 5788888899999
Q ss_pred HHhhCCch--h-HHHHH----------hcCCHHHHHHHhc-CCCHHHHHHHHHHHHHhhccc-ccccccCChhhhHHHHh
Q 025930 97 ANLCGNDK--L-QLKLR----------GEGGIKALLGMVR-CGHPDVLAQVARGIANFAKCE-SRASTQGTKTGRSLLID 161 (246)
Q Consensus 97 ~~L~~~~~--~-~~~l~----------~~g~i~~L~~ll~-~~~~~~~~~a~~~L~nL~~~~-~~~~~~~~~~~~~~l~~ 161 (246)
..+|..+. + ...+. +..-...++..+. +.+.+.+..++..+-.+..++ +... .-..|..+..
T Consensus 125 ~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~---R~~LR~Ef~~ 201 (386)
T 2bnx_A 125 SALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF---RVHIRSELMR 201 (386)
T ss_dssp HHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHH---HHHHHHHHHH
T ss_pred HHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHH---HHHHHHHHHH
Confidence 88884332 3 33332 2224556777776 456666666666666666432 1111 1355777777
Q ss_pred CCChHHHHHcccCCChhHHHHH
Q 025930 162 DGALPWIVQNSNNEASPIRRHI 183 (246)
Q Consensus 162 ~g~i~~Lv~ll~~~~~~v~~~a 183 (246)
.|..+.+-.+=...++.+....
T Consensus 202 ~GL~~il~~Lr~~~~~~L~~Qi 223 (386)
T 2bnx_A 202 LGLHQVLQELREIENEDMKVQL 223 (386)
T ss_dssp TTHHHHHHHHTTCCCHHHHHHH
T ss_pred CChHHHHHHHhccCChhHHHHH
Confidence 8876666555544566555443
No 118
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=84.36 E-value=5.1 Score=35.30 Aligned_cols=63 Identities=19% Similarity=0.276 Sum_probs=42.7
Q ss_pred CHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh
Q 025930 30 GLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC 100 (246)
Q Consensus 30 ~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~ 100 (246)
.+..+++++... |..+|..|.+.|..++.+ ++-.. .+.+|.++|.. +++.-....-.+|..+-
T Consensus 66 Ai~a~lDLcEDe-d~~IR~qaik~Lp~~ck~-~~i~k-----iaDvL~QlLqt-dd~~E~~~V~~sL~sll 128 (507)
T 3u0r_A 66 AINAQLDLCEDE-DVSIRRQAIKELPQFATG-ENLPR-----VADILTQLLQT-DDSAEFNLVNNALLSIF 128 (507)
T ss_dssp HHHHHHHHHTCS-SHHHHHHHHHHGGGGCCT-TCHHH-----HHHHHHHHTTC-CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc-cHHHHHHHHHhhHHHhhh-hhhhh-----HHHHHHHHHhc-cchHHHHHHHHHHHHHH
Confidence 466788888774 788888888888888888 33222 35688899987 45444445555555444
No 119
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=82.50 E-value=1.9 Score=34.64 Aligned_cols=98 Identities=15% Similarity=0.160 Sum_probs=61.2
Q ss_pred CChHHHHHHHHHHHHhhCCch-hHHHHHhcCCHHHHHHHhc--------CCCHHHHHHHHHHHHHhhcccccccccCChh
Q 025930 84 EDPQTLRMVAGAIANLCGNDK-LQLKLRGEGGIKALLGMVR--------CGHPDVLAQVARGIANFAKCESRASTQGTKT 154 (246)
Q Consensus 84 ~~~~~~~~a~~aL~~L~~~~~-~~~~l~~~g~i~~L~~ll~--------~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~ 154 (246)
.++..+..++++++|+..++. .++.+........++..+. +++..++..++..+.|++..-. ....
T Consensus 102 ~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~-----~~~~ 176 (253)
T 3gae_A 102 KNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVT-----KGNS 176 (253)
T ss_dssp SSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHH-----TSCS
T ss_pred CchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHh-----hccc
Confidence 457778899999999998887 5555544323344444331 1245678888899999986310 0000
Q ss_pred hhHHHHhCCChHHHHHccc---------CCChhHHHHHHHHHHHhcc
Q 025930 155 GRSLLIDDGALPWIVQNSN---------NEASPIRRHIELALCHLAQ 192 (246)
Q Consensus 155 ~~~~l~~~g~i~~Lv~ll~---------~~~~~v~~~a~~aL~~La~ 192 (246)
+......++..+. ..+++....++.||++|..
T Consensus 177 ------~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~ 217 (253)
T 3gae_A 177 ------DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 217 (253)
T ss_dssp ------CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHH
T ss_pred ------hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHh
Confidence 1122333444333 1378899999999999986
No 120
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=81.96 E-value=14 Score=35.02 Aligned_cols=128 Identities=11% Similarity=-0.021 Sum_probs=83.2
Q ss_pred CCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhC------CchhHHHHHhcCCH
Q 025930 42 EDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCG------NDKLQLKLRGEGGI 115 (246)
Q Consensus 42 ~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~------~~~~~~~l~~~g~i 115 (246)
.|+..++.|-..|.++-..+ ++...+..++.+..+..++-.|+..|.|... +++.+..+ +...+
T Consensus 37 ~~~~~r~~A~~~L~~~~~~p---------~~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~i-r~~ll 106 (963)
T 2x19_B 37 PNIENKNLAQKWLMQAQVSP---------QAWHFSWQLLQPDKVPEIQYFGASALHIKISRYWSDIPTDQYESL-KAQLF 106 (963)
T ss_dssp CCHHHHHHHHHHHHHHHHST---------THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHHH-HHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCH---------HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhCHHhCCHHHHHHH-HHHHH
Confidence 47777777777777775554 4566677777665678899999999998861 22333333 32234
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccC-----CChhHHHHHHHHHHHh
Q 025930 116 KALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNN-----EASPIRRHIELALCHL 190 (246)
Q Consensus 116 ~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~-----~~~~v~~~a~~aL~~L 190 (246)
..+... ..+.+.++.+.+.++..++..+ + ++ ...+.++.|+.++.. +++..+..++..|..+
T Consensus 107 ~~l~~~-~~~~~~ir~kl~~~la~i~~~~------~-p~-----~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l 173 (963)
T 2x19_B 107 TQITRF-ASGSKIVLTRLCVALASLALSM------M-PD-----AWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVL 173 (963)
T ss_dssp HHHHHT-TTSCHHHHHHHHHHHHHHHHHH------T-TT-----TSTTHHHHHHHHHCC------CHHHHHHHHHHHHHH
T ss_pred HHHHHH-cCCCHHHHHHHHHHHHHHHHHh------C-cc-----ccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhC
Confidence 444432 1235778889999999888631 1 11 134678888888865 2566778888888877
Q ss_pred cc
Q 025930 191 AQ 192 (246)
Q Consensus 191 a~ 192 (246)
+.
T Consensus 174 ~e 175 (963)
T 2x19_B 174 PE 175 (963)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 121
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=81.45 E-value=25 Score=34.18 Aligned_cols=117 Identities=10% Similarity=0.051 Sum_probs=65.5
Q ss_pred ChHHHHHHHHHHHHhh----CC-chhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHH
Q 025930 85 DPQTLRMVAGAIANLC----GN-DKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLL 159 (246)
Q Consensus 85 ~~~~~~~a~~aL~~L~----~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l 159 (246)
++.++..+.-++..|. .+ +.+...+++ -....+...+...+.+-+..++.+|+|+.. +
T Consensus 408 ~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~-~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~----------p------ 470 (1056)
T 1lsh_A 408 RPILRKTAVLGYGSLVFRYCANTVSCPDELLQ-PLHDLLSQSSDRAKEEEIVLALKALGNAGQ----------P------ 470 (1056)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHTC----------G------
T ss_pred CHHHHHHHHHHHHHHHHHHhccCCCCCHHHHH-HHHHHHHHHHhcCChHHHHHHHHHhhccCC----------h------
Confidence 4666666666666554 22 221111110 012223444456777888899999999883 1
Q ss_pred HhCCChHHHHHcccC-------CChhHHHHHHHHHHHhccC-chhHHHHHhCCcHHHHHHHHhc-CCHHHHHHHHHHHH
Q 025930 160 IDDGALPWIVQNSNN-------EASPIRRHIELALCHLAQH-EVNAKDMISGGALWELVRISRD-CSREDIRTLAHRTL 229 (246)
Q Consensus 160 ~~~g~i~~Lv~ll~~-------~~~~v~~~a~~aL~~La~~-~~~~~~i~~~g~i~~L~~ll~~-~~~~~~~~~A~~~L 229 (246)
..++.|..++.. ....++..|+.+|..++.. ++. .-+.+..+..+ ..+.++|-+|...|
T Consensus 471 ---~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~--------v~~il~~i~~n~~e~~EvRiaA~~~L 538 (1056)
T 1lsh_A 471 ---NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK--------VQEIVLPIFLNVAIKSELRIRSCIVF 538 (1056)
T ss_dssp ---GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH--------HHHHHHHHHHCTTSCHHHHHHHHHHH
T ss_pred ---hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHH--------HHHHHHHHhcCCCCChHHHHHHHHHH
Confidence 356777776632 1346888899999999763 222 22334455532 34555555555555
No 122
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=79.23 E-value=0.96 Score=40.94 Aligned_cols=132 Identities=14% Similarity=0.098 Sum_probs=85.9
Q ss_pred hCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCCh-HHHHHHHHHHHHhhCCchhH
Q 025930 28 AGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDP-QTLRMVAGAIANLCGNDKLQ 106 (246)
Q Consensus 28 ~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~-~~~~~a~~aL~~L~~~~~~~ 106 (246)
.+.++.++..|++. |++++..|+.+|.-++ .++.-.. .+..++..+.+.+|- .........|..|+..+...
T Consensus 298 d~Vv~aVL~GL~D~-DDDVRAVAAetLiPIA-~p~~l~~-----LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a 370 (800)
T 3oc3_A 298 DGLCRKLVSLLSSP-DEDIKLLSAELLCHFP-ITDSLDL-----VLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL 370 (800)
T ss_dssp HHHHHHHHHHTTCS-SHHHHHHHHHHHTTSC-CSSTHHH-----HHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHhhcCCc-ccHHHHHHHHHhhhhc-chhhHHH-----HHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc
Confidence 55688888999886 7788999999999999 3322222 356778888765442 22335566777776433210
Q ss_pred HHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHH-HHcccCCChhHHHHHHH
Q 025930 107 LKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWI-VQNSNNEASPIRRHIEL 185 (246)
Q Consensus 107 ~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~L-v~ll~~~~~~v~~~a~~ 185 (246)
-.....+|.|..++++.-+.++..++.++..+.. ...++.+ -+++-+.+++++..+..
T Consensus 371 --~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL~-------------------~~~LRLIFQNILLE~neeIl~lS~~ 429 (800)
T 3oc3_A 371 --SIPPERLKDIFPCFTSPVPEVRTSILNMVKNLSE-------------------ESIDFLVAEVVLIEEKDEIREMAIK 429 (800)
T ss_dssp --CCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCCC-------------------HHHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred --ccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHHh-------------------hhHHHHHHHHHHhCCcHHHHHHHHH
Confidence 1122578999999999999999999988877651 1123333 22445567777777665
Q ss_pred HH
Q 025930 186 AL 187 (246)
Q Consensus 186 aL 187 (246)
+.
T Consensus 430 VW 431 (800)
T 3oc3_A 430 LL 431 (800)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 123
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=77.42 E-value=3.4 Score=29.89 Aligned_cols=71 Identities=8% Similarity=0.039 Sum_probs=53.1
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhc
Q 025930 114 GIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLA 191 (246)
Q Consensus 114 ~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La 191 (246)
++..+.+-+.++++.++-.|+.+|-.+..+ +.+.+...+.....+..|+.++...++.|+..++..+...+
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkN-------cG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSN-------CGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-------SCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHh-------cCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 366777788888899888888877776643 23566666666667777888887778889998888887664
No 124
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=77.25 E-value=36 Score=32.78 Aligned_cols=192 Identities=8% Similarity=0.021 Sum_probs=102.1
Q ss_pred hCCHHHHHHHhcCCC--CHHHHHHHHHHHHHhcC--Ccc----hHHHHHhcCcHHHHHHHHh-cCCChHHHHHHHHHHHH
Q 025930 28 AGGLTSLLMLLGSSE--DETIHRVAAGAIANLAM--NET----NQELIMTQGGIGLLSTTAA-NAEDPQTLRMVAGAIAN 98 (246)
Q Consensus 28 ~g~i~~Li~ll~~~~--~~~~~~~a~~~L~~la~--~~~----~~~~i~~~g~i~~L~~ll~-~~~~~~~~~~a~~aL~~ 98 (246)
.++......+|.++. ++.++-.|+.+|.+.-. .++ .+..+.+ ..+..+.. .. ......++...+.++..
T Consensus 39 p~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~-~ll~~l~~-~~~~~~~~~IrnKL~~~la~ 116 (980)
T 3ibv_A 39 STGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIRD-SVWSYIKE-LSFLDEPAYISNAVQHLLTL 116 (980)
T ss_dssp TTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHH-HHHHHHHH-CCSTTSCTHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHHH-HHHHHHHH-hcCCCCcHHHHHHHHHHHHH
Confidence 467888888887753 67788888888886633 233 3333332 22333322 11 12345677777778877
Q ss_pred hhC--CchhHHHHHhcCCHHHHHHHhcCCCH-HHHHHHHHHHHHhhcc-ccccccc------CChhhhHHHHhCC---Ch
Q 025930 99 LCG--NDKLQLKLRGEGGIKALLGMVRCGHP-DVLAQVARGIANFAKC-ESRASTQ------GTKTGRSLLIDDG---AL 165 (246)
Q Consensus 99 L~~--~~~~~~~l~~~g~i~~L~~ll~~~~~-~~~~~a~~~L~nL~~~-~~~~~~~------~~~~~~~~l~~~g---~i 165 (246)
+.. .+.... +.++-++.++.+++. ......+++|..++.. .+..... ...+.++.+.+.. ++
T Consensus 117 l~~~~~p~~Wp-----~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~ 191 (980)
T 3ibv_A 117 LFLQLYPSNWN-----DFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIV 191 (980)
T ss_dssp HHHHHTTTTCT-----THHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHhCcccCc-----hHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHH
Confidence 761 122111 235556666654333 3334444555544321 0000000 0012244444321 12
Q ss_pred HHHHHcc----cCCChhHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHc
Q 025930 166 PWIVQNS----NNEASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLT 230 (246)
Q Consensus 166 ~~Lv~ll----~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~ 230 (246)
+....++ ...+++++..++.+|......-.. ..+.+.+.++.+.+++.+ +..+.+|.++|.
T Consensus 192 ~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~-~~i~~~~ll~~l~~~L~~---~~~r~~A~ecL~ 256 (980)
T 3ibv_A 192 SFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWINI-NLIVNEPCMNLLYSFLQI---EELRCAACETMT 256 (980)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCH-HHHHCHHHHHHHHHHTTS---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCH-HhhhcchHHHHHHHHcCC---hHHHHHHHHHHH
Confidence 2223333 336788888899999888764333 455556677777777753 567888888775
No 125
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=77.02 E-value=22 Score=34.42 Aligned_cols=178 Identities=10% Similarity=0.045 Sum_probs=98.9
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhC-----Cchh
Q 025930 31 LTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCG-----NDKL 105 (246)
Q Consensus 31 i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~-----~~~~ 105 (246)
+..++..+-+++++ .++.|-..|..+-..+ ++...+..++....++.++-.|+..|.+... -+..
T Consensus 18 Le~av~~ly~p~~~-~r~~A~~~L~~~q~sp---------~aw~~~~~iL~~s~~~~vR~faa~~Lk~~I~~~W~~L~~e 87 (1023)
T 4hat_C 18 LDQVVSTFYQGSGV-QQKQAQEILTKFQDNP---------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPND 87 (1023)
T ss_dssp HHHHHHHHHHCCHH-HHHHHHHHHHHHHHCT---------TGGGGHHHHHHHCCCHHHHHHHHHHHHHHHHHHGGGSCHH
T ss_pred HHHHHHHHhCCChH-HHHHHHHHHHHHHcCc---------cHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcCCHH
Confidence 55566666565333 5666666666665544 3455556666655678899899999988762 2333
Q ss_pred HHHHHhcCCHHHHHHHhcCC-----CHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHH
Q 025930 106 QLKLRGEGGIKALLGMVRCG-----HPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIR 180 (246)
Q Consensus 106 ~~~l~~~g~i~~L~~ll~~~-----~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~ 180 (246)
...-++...+..+......+ ..-++.+.+.++..+...+ . ++ ...+.++.++.++.. ++..+
T Consensus 88 ~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~------~-p~-----~Wp~~l~dL~~~l~~-~~~~~ 154 (1023)
T 4hat_C 88 HRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQE------W-PQ-----NWPEFIPELIGSSSS-SVNVC 154 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHH------T-TT-----TCTTHHHHHHHHTTT-CHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHh------C-hh-----hchHHHHHHHHHhcC-CHHHH
Confidence 33333434455554443222 3456667777888777531 1 11 134678888888864 45556
Q ss_pred HHHHHHHHHhccC------c---hh-H----HHHHh--CCcHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 025930 181 RHIELALCHLAQH------E---VN-A----KDMIS--GGALWELVRISRDCSREDIRTLAHRTLTS 231 (246)
Q Consensus 181 ~~a~~aL~~La~~------~---~~-~----~~i~~--~g~i~~L~~ll~~~~~~~~~~~A~~~L~~ 231 (246)
...+..|..|+.. . .. + +.+.+ ...+..+.+++...+.......+.+++++
T Consensus 155 ~~~L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s 221 (1023)
T 4hat_C 155 ENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLR 221 (1023)
T ss_dssp HHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 7677777766431 1 11 1 22222 12333344445444555556667776653
No 126
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=77.00 E-value=16 Score=31.67 Aligned_cols=99 Identities=16% Similarity=0.145 Sum_probs=62.7
Q ss_pred CChHHHHHHHHHHHHhhCCchhHHHHHhc-CCHHHHHHHhc--------CCCHHHHHHHHHHHHHhhcccccccccCChh
Q 025930 84 EDPQTLRMVAGAIANLCGNDKLQLKLRGE-GGIKALLGMVR--------CGHPDVLAQVARGIANFAKCESRASTQGTKT 154 (246)
Q Consensus 84 ~~~~~~~~a~~aL~~L~~~~~~~~~l~~~-g~i~~L~~ll~--------~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~ 154 (246)
..+..+..++++++|+..++.....++.. .....++..+. ..+..++..++..+.|++..-
T Consensus 274 ~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~---------- 343 (425)
T 3pst_A 274 KNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALV---------- 343 (425)
T ss_dssp SSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH----------
T ss_pred CChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHH----------
Confidence 35777889999999999888754544432 22445555442 124567888888888998631
Q ss_pred hhHHHHhCCChHHHHHccc---------CCChhHHHHHHHHHHHhccC
Q 025930 155 GRSLLIDDGALPWIVQNSN---------NEASPIRRHIELALCHLAQH 193 (246)
Q Consensus 155 ~~~~l~~~g~i~~Lv~ll~---------~~~~~v~~~a~~aL~~La~~ 193 (246)
.+.-.+....+.++..+. ..+++....++.||++|...
T Consensus 344 -~~~~~~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~ 390 (425)
T 3pst_A 344 -TKGNSDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 390 (425)
T ss_dssp -HHSCSCTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred -hcccchHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhc
Confidence 000000122344555444 25889999999999999863
No 127
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=76.72 E-value=4.8 Score=29.94 Aligned_cols=71 Identities=11% Similarity=0.024 Sum_probs=54.3
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccC-CChhHHHHHHHHHHHhc
Q 025930 114 GIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNN-EASPIRRHIELALCHLA 191 (246)
Q Consensus 114 ~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~-~~~~v~~~a~~aL~~La 191 (246)
++..+.+-|.++++.++-.|+.+|-.+..+ +...+...+.....+..|+.++.. .++.|+..++..+..-+
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkN-------cG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVAN-------CGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-------TCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHH-------hhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 356777888888999998888888777653 336777777777788888888875 57889999888776664
No 128
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=76.63 E-value=6.3 Score=28.80 Aligned_cols=72 Identities=6% Similarity=-0.098 Sum_probs=57.3
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccC------CChhHHHHHHHHH
Q 025930 114 GIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNN------EASPIRRHIELAL 187 (246)
Q Consensus 114 ~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~------~~~~v~~~a~~aL 187 (246)
++..+.+-+.++++.++-.|+.+|-.+..+ +.+.+...+....++..|+.++.+ .++.|+..++..+
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkN-------CG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li 111 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNH-------CGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEIL 111 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-------SCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHH-------cCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHH
Confidence 367778888899999999999888877753 336788888888889999999874 3778999998888
Q ss_pred HHhcc
Q 025930 188 CHLAQ 192 (246)
Q Consensus 188 ~~La~ 192 (246)
..-+.
T Consensus 112 ~~W~~ 116 (148)
T 1mhq_A 112 FSWTV 116 (148)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77653
No 129
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=76.16 E-value=7.1 Score=31.24 Aligned_cols=97 Identities=11% Similarity=0.064 Sum_probs=61.7
Q ss_pred CCCHHHHHHHHHHHHHhcCCcc-hHHHHHhcCcHHHHHHHHhc-C------CChHHHHHHHHHHHHhh---CCchhHHHH
Q 025930 41 SEDETIHRVAAGAIANLAMNET-NQELIMTQGGIGLLSTTAAN-A------EDPQTLRMVAGAIANLC---GNDKLQLKL 109 (246)
Q Consensus 41 ~~~~~~~~~a~~~L~~la~~~~-~~~~i~~~g~i~~L~~ll~~-~------~~~~~~~~a~~aL~~L~---~~~~~~~~l 109 (246)
+.++..+.-++++++|+-.++. .+..+........++..+.+ . .+..++..++..+.|++ .....
T Consensus 101 ~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---- 176 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---- 176 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS----
T ss_pred CCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc----
Confidence 3467788889999999988877 66666543223333433321 1 24567878888999998 11111
Q ss_pred HhcCCHHHHHHHhc---------CCCHHHHHHHHHHHHHhhc
Q 025930 110 RGEGGIKALLGMVR---------CGHPDVLAQVARGIANFAK 142 (246)
Q Consensus 110 ~~~g~i~~L~~ll~---------~~~~~~~~~a~~~L~nL~~ 142 (246)
+......+++++. ..+++....++.++++|..
T Consensus 177 -~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~ 217 (253)
T 3gae_A 177 -DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 217 (253)
T ss_dssp -CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHh
Confidence 1122344555554 1377888999999999884
No 130
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=73.94 E-value=42 Score=29.56 Aligned_cols=113 Identities=13% Similarity=0.149 Sum_probs=81.5
Q ss_pred HHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCC-ChH-HHHHHHHHHHHhh
Q 025930 23 EKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAE-DPQ-TLRMVAGAIANLC 100 (246)
Q Consensus 23 ~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~-~~~-~~~~a~~aL~~L~ 100 (246)
+.|.+-=-++.++..|.++ .+.+...||.++. ....+..+...+.+..+++++.+.+ .-. +....-.++..|+
T Consensus 110 d~VLevysve~i~~aL~S~-~~~l~~~~ckVI~----~s~pk~lfa~t~iidiLL~lyFd~~t~i~~vvn~IE~~~~~Ls 184 (500)
T 3vld_A 110 DDVLEVYSAEDLVKALRSE-IDPLKVAACRVIE----NSQPKGLFATSNIIDILLDILFDEKVENDKLITAIEKALERLS 184 (500)
T ss_dssp HHHHHHSCHHHHHHHHTSS-CHHHHHHHHHHHH----TCSSGGGGTTSSHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCHHHHHHHHhcC-ChHHHHHHHHHhc----ccCchhHhccChHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcC
Confidence 4555566688899999996 7777888899888 5556777888888999998887632 223 6666677788888
Q ss_pred CCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 025930 101 GNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFA 141 (246)
Q Consensus 101 ~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~ 141 (246)
+++-++.++.+ ...|.+..+-++.++.+..+-...+.-+.
T Consensus 185 sdeLirrril~-nnl~lL~~vK~~~~~i~~sRLLdll~il~ 224 (500)
T 3vld_A 185 TDELIRRRLFD-NNLPYLVSVKGRMETVSFVRLIDFLTIEF 224 (500)
T ss_dssp TSHHHHHHHHT-TTHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHH-HhHHHHHHHhcCCCceeHHHHHHHHHHHh
Confidence 88888888875 45677766666666666666665555444
No 131
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=73.87 E-value=48 Score=31.90 Aligned_cols=144 Identities=10% Similarity=0.028 Sum_probs=83.5
Q ss_pred CHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh---CCchhHHHHHhcCCHHHHH
Q 025930 43 DETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC---GNDKLQLKLRGEGGIKALL 119 (246)
Q Consensus 43 ~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~---~~~~~~~~l~~~g~i~~L~ 119 (246)
++.+...+..+|.....--+ -..++..+.++.+...+.+ ++++..|+.+|..+. .+++.+..+++.=.+...+
T Consensus 206 ~~~l~~~~L~~l~s~i~wi~-~~~i~~~~ll~~l~~~L~~---~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~ 281 (980)
T 3ibv_A 206 NYGTVGLCLQVYAQWVSWIN-INLIVNEPCMNLLYSFLQI---EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFF 281 (980)
T ss_dssp CHHHHHHHHHHHHHHTTTSC-HHHHHCHHHHHHHHHHTTS---HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhcC-HHhhhcchHHHHHHHHcCC---hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHH
Confidence 66777788888888866432 2345555667777777764 779999999999987 4455555555431112222
Q ss_pred HHhc--CCCHHHHHHHHHHHHHhhcc--ccccccc--CChhhhHHHHh--CCChHHHHHcccCCChhHHHHHHHHHHHhc
Q 025930 120 GMVR--CGHPDVLAQVARGIANFAKC--ESRASTQ--GTKTGRSLLID--DGALPWIVQNSNNEASPIRRHIELALCHLA 191 (246)
Q Consensus 120 ~ll~--~~~~~~~~~a~~~L~nL~~~--~~~~~~~--~~~~~~~~l~~--~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La 191 (246)
..+. .+|.+..+..++.+..++.. .. ...+ .+++.+..... .+.++.++.++..++.++...+...+..+.
T Consensus 282 ~~l~~~~~D~d~~~~la~L~~~~ge~l~~~-~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l 360 (980)
T 3ibv_A 282 SKSQEQSTDPNFDEHVAKLINAQGVELVAI-KSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLL 360 (980)
T ss_dssp CC-----CCHHHHHHHHHHHHHHHHHHHHH-HTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHH
T ss_pred HHHhcccccHHHHHHHHHHHHHHHHHHHHH-ccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHH
Confidence 2222 46788777777666655421 00 0000 01111111111 257888888888888888777766655543
No 132
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=73.11 E-value=7.8 Score=28.36 Aligned_cols=72 Identities=10% Similarity=-0.037 Sum_probs=56.7
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccC------CChhHHHHHHHHH
Q 025930 114 GIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNN------EASPIRRHIELAL 187 (246)
Q Consensus 114 ~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~------~~~~v~~~a~~aL 187 (246)
++..+.+-+.++++.++-.|+.+|-.+..+ ..+.+...+....++..|+.++.+ .++.|+..++..+
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkN-------CG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li 121 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKS-------CGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELL 121 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-------CCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHh-------cCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHH
Confidence 466788888899999999999888877653 336777888888888899998864 4778999998888
Q ss_pred HHhcc
Q 025930 188 CHLAQ 192 (246)
Q Consensus 188 ~~La~ 192 (246)
..-+.
T Consensus 122 ~~W~~ 126 (149)
T 3g2s_A 122 YSWTV 126 (149)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77753
No 133
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=72.79 E-value=12 Score=31.75 Aligned_cols=98 Identities=16% Similarity=0.180 Sum_probs=61.5
Q ss_pred CChHHHHHHHHHHHHhhCCchhHHHHHhcC-CHHHHHHHhc--------CCCHHHHHHHHHHHHHhhcccccccccCChh
Q 025930 84 EDPQTLRMVAGAIANLCGNDKLQLKLRGEG-GIKALLGMVR--------CGHPDVLAQVARGIANFAKCESRASTQGTKT 154 (246)
Q Consensus 84 ~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g-~i~~L~~ll~--------~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~ 154 (246)
..+..+..++++++|+..++.....++... ....++..+. ..+..++..++..+.|++..-
T Consensus 211 ~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~---------- 280 (362)
T 3l3f_X 211 KNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALV---------- 280 (362)
T ss_dssp SSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHH----------
T ss_pred CChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHH----------
Confidence 357778899999999998887544444321 2233444331 124567888888888998631
Q ss_pred hhHHHHhCCChHHHHHccc---------CCChhHHHHHHHHHHHhcc
Q 025930 155 GRSLLIDDGALPWIVQNSN---------NEASPIRRHIELALCHLAQ 192 (246)
Q Consensus 155 ~~~~l~~~g~i~~Lv~ll~---------~~~~~v~~~a~~aL~~La~ 192 (246)
.+.. .+....+.++..+. ..+++....++.||++|..
T Consensus 281 ~~~~-~~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~ 326 (362)
T 3l3f_X 281 TKGN-SDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 326 (362)
T ss_dssp HHTC-SCTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred hccc-chHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHh
Confidence 0000 00123345555554 3588999999999999986
No 134
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=72.75 E-value=61 Score=31.60 Aligned_cols=133 Identities=14% Similarity=0.116 Sum_probs=76.1
Q ss_pred CHHHHHHHHHHHHHhcCC--c-chHHHHHhcCcHHHHHHHHhcCC--ChHH--HHHHHHHHHHhhCCchhH---HHHHhc
Q 025930 43 DETIHRVAAGAIANLAMN--E-TNQELIMTQGGIGLLSTTAANAE--DPQT--LRMVAGAIANLCGNDKLQ---LKLRGE 112 (246)
Q Consensus 43 ~~~~~~~a~~~L~~la~~--~-~~~~~i~~~g~i~~L~~ll~~~~--~~~~--~~~a~~aL~~L~~~~~~~---~~l~~~ 112 (246)
+....+.++++++.++.. + ..+..+.+ .++.|+.+..... |.+. ....++.++..+ +.- ..+.+
T Consensus 492 sW~~lea~~~aigaIag~~~~~~E~~~Lp~--vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~---~wl~~h~~~L~- 565 (1073)
T 3gjx_A 492 SWKNLNTLCWAIGSISGAMHEEDEKRFLVT--VIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYP---RFLRAHWKFLK- 565 (1073)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHHHHHHHH--HHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCH---HHHHHCHHHHH-
T ss_pred CHHHHhHHHHHHHHHHCcCCcccccchHHH--HHHHHhcccccccccchhHHHHHHHHHHHhhhH---HHHHhCHHHHH-
Confidence 467778899999999754 2 24445554 6777777776432 2222 222334444433 221 11111
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhC--C-ChHHHHHccc-------CCChhHHHH
Q 025930 113 GGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDD--G-ALPWIVQNSN-------NEASPIRRH 182 (246)
Q Consensus 113 g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~--g-~i~~Lv~ll~-------~~~~~v~~~ 182 (246)
.++.-+++.+...+++++..|+.++..+|. ++++.+... | ..|.+-.++. .-.++-...
T Consensus 566 ~vl~~L~~~m~~~~~~vq~aA~~af~~i~~-----------~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~ 634 (1073)
T 3gjx_A 566 TVVNKLFEFMHETHDGVQDMACDTFIKIAQ-----------KCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHT 634 (1073)
T ss_dssp HHHHHHHHHTTCCSTTHHHHHHHHHHHHHH-----------HTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-----------HHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHH
Confidence 235566777777889999999999999993 666665431 2 2223222222 124555555
Q ss_pred HHHHHHHhcc
Q 025930 183 IELALCHLAQ 192 (246)
Q Consensus 183 a~~aL~~La~ 192 (246)
-..+++.+..
T Consensus 635 lyeav~~vi~ 644 (1073)
T 3gjx_A 635 FYEAVGYMIG 644 (1073)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 5666666654
No 135
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=72.35 E-value=5.3 Score=31.41 Aligned_cols=67 Identities=9% Similarity=0.040 Sum_probs=48.8
Q ss_pred ChHHHHHcccCCChhHHHHHHHHHHHhccCch--hHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHc
Q 025930 164 ALPWIVQNSNNEASPIRRHIELALCHLAQHEV--NAKDMISGGALWELVRISRDCSREDIRTLAHRTLT 230 (246)
Q Consensus 164 ~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~~--~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~ 230 (246)
++..|..-+...++.++..|+..|-.+..|-. -...+.....+..|++++....+..++.-+..++.
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~ 114 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQ 114 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 56677778888999999999998888876433 34556566677778888876666667766665553
No 136
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=72.15 E-value=6.8 Score=37.35 Aligned_cols=126 Identities=8% Similarity=0.011 Sum_probs=74.9
Q ss_pred CHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhC------CchhHHHHHhcCCHH
Q 025930 43 DETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCG------NDKLQLKLRGEGGIK 116 (246)
Q Consensus 43 ~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~------~~~~~~~l~~~g~i~ 116 (246)
|+..++.|-..|..+-..+ ++...+..++....+..++-.|+..|.+... .++.+..+ +...+.
T Consensus 20 d~~~r~~A~~~L~~~~~~p---------~~w~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~i-r~~ll~ 89 (971)
T 2x1g_F 20 NSQNQAITHEWLTDAEASP---------QAWQFSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPENREEL-KQKILE 89 (971)
T ss_dssp TTTC----CHHHHHTTTST---------HHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHH-HHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCH---------HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHH-HHHHHH
Confidence 4445666677777765554 2344566777655678899999999998761 22333333 333445
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCC------ChhHHHHHHHHHHHh
Q 025930 117 ALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNE------ASPIRRHIELALCHL 190 (246)
Q Consensus 117 ~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~------~~~v~~~a~~aL~~L 190 (246)
.+...- .+...++.+.+.++..++..+ .+ ...+.++.++.++..+ ++..++.++.+|..+
T Consensus 90 ~l~~~~-~~~~~vr~kl~~~la~i~~~~-------~p------~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l 155 (971)
T 2x1g_F 90 SIVRFA-GGPKIVLNRLCISLGAYIVHM-------LG------EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAI 155 (971)
T ss_dssp HHHHHT-TSCHHHHHHHHHHHHHHHHHT-------TC------C------HHHHHHHHTC----CHHHHHHHHHHHHHHH
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHHHHHc-------cc------cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHh
Confidence 444433 235778899999999888632 11 2356788888888765 566778888888877
Q ss_pred cc
Q 025930 191 AQ 192 (246)
Q Consensus 191 a~ 192 (246)
+.
T Consensus 156 ~E 157 (971)
T 2x1g_F 156 PE 157 (971)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 137
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=71.91 E-value=50 Score=32.24 Aligned_cols=177 Identities=11% Similarity=0.014 Sum_probs=102.0
Q ss_pred CCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhC-----Cc
Q 025930 29 GGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCG-----ND 103 (246)
Q Consensus 29 g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~-----~~ 103 (246)
..+..++..+-++ ++..+..|-..|..+-.+++ +...+..++....++.++-.|+..|.+... -+
T Consensus 28 ~~Le~lv~~ly~p-~~~~r~qA~~~L~q~q~sp~---------aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~ 97 (1073)
T 3gjx_A 28 NLLDNVVNCLYHG-EGAQQRMAQEVLTHLKEHPD---------AWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILP 97 (1073)
T ss_dssp HHHHHHHHTTTCS-SHHHHHHHHHHHHTSSCCSC---------HHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSC
T ss_pred HHHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCch---------HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCC
Confidence 3467777777776 56667778888877766652 334444455555678899899999988762 12
Q ss_pred hhHHHHHhcCCHHHHHHHhcC-----CCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChh
Q 025930 104 KLQLKLRGEGGIKALLGMVRC-----GHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASP 178 (246)
Q Consensus 104 ~~~~~l~~~g~i~~L~~ll~~-----~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~ 178 (246)
.....-++...+..+...-.. .++.++.+.+.++..+...+ . ++ ...+.++.+++++. .++.
T Consensus 98 ~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~------~-P~-----~Wp~fi~dLv~~~~-~~~~ 164 (1073)
T 3gjx_A 98 RNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQE------W-PK-----HWPTFISDIVGASR-TSES 164 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHH------T-TT-----TCTTHHHHHHHHHH-HCHH
T ss_pred HHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHh------C-hh-----hccHHHHHHHHHhC-CCHH
Confidence 333333333345555444332 24567778888888877531 1 11 13456788888775 3456
Q ss_pred HHHHHHHHHHHhccC---c--h---------hHHHHHhCCcHHHHHH----HHhcCCHHHHHHHHHHHHc
Q 025930 179 IRRHIELALCHLAQH---E--V---------NAKDMISGGALWELVR----ISRDCSREDIRTLAHRTLT 230 (246)
Q Consensus 179 v~~~a~~aL~~La~~---~--~---------~~~~i~~~g~i~~L~~----ll~~~~~~~~~~~A~~~L~ 230 (246)
.+...+..|..|+.. . . .++.+.+. .+.++. ++...++......+.++++
T Consensus 165 ~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~--~~~Il~ll~~iL~~~~~~~lv~~~L~~L~ 232 (1073)
T 3gjx_A 165 LCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNE--FSQIFQLCQFVMENSQNAPLVHATLETLL 232 (1073)
T ss_dssp HHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHT--CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH--HHHHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence 667777888777541 1 0 12233332 334443 3444555566666667765
No 138
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=70.88 E-value=23 Score=25.69 Aligned_cols=74 Identities=18% Similarity=0.161 Sum_probs=56.5
Q ss_pred hhhhHHHHhCCChHHHHHcccC------CChhHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhc-CCHHHHHHHH
Q 025930 153 KTGRSLLIDDGALPWIVQNSNN------EASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRD-CSREDIRTLA 225 (246)
Q Consensus 153 ~~~~~~l~~~g~i~~Lv~ll~~------~~~~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~-~~~~~~~~~A 225 (246)
.+.+..+++.|++..+-.-|.+ ++..+|...+.+|.+|-. .++.+.++|.-..++.+-+. ......+..|
T Consensus 51 ~~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lPI---~~e~Lk~SglGkvv~~l~k~~~et~~nk~la 127 (145)
T 2xpp_A 51 KALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMKI---HKEHLVTSGVGKIVYFYSINPKESKEVRASA 127 (145)
T ss_dssp TTTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSCC---CHHHHHHHCHHHHHHHHHHCTTSCHHHHHHH
T ss_pred HHHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCCC---CHHHhhcCCCCcchhhhhcCCccCHHHHHHH
Confidence 4678888899999988877754 267899999999999853 36778888888877777754 3456677888
Q ss_pred HHHH
Q 025930 226 HRTL 229 (246)
Q Consensus 226 ~~~L 229 (246)
.+++
T Consensus 128 ~~Li 131 (145)
T 2xpp_A 128 KALV 131 (145)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7665
No 139
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=67.77 E-value=25 Score=25.57 Aligned_cols=70 Identities=7% Similarity=-0.065 Sum_probs=53.5
Q ss_pred CHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC--cchHHHHHhcCcHHHHHHHHhc-----CCChHHHHHHHHHHHHhh
Q 025930 30 GLTSLLMLLGSSEDETIHRVAAGAIANLAMN--ETNQELIMTQGGIGLLSTTAAN-----AEDPQTLRMVAGAIANLC 100 (246)
Q Consensus 30 ~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~--~~~~~~i~~~g~i~~L~~ll~~-----~~~~~~~~~a~~aL~~L~ 100 (246)
++..|...+++. ++.++..|...|-.|..+ +.....|.....+.-|+.+++. ..++.++..++..+..-+
T Consensus 49 a~ral~krl~~~-n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 49 ATRLLAHKIQSP-QEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 477888888875 888899999998888776 4455667667777788888863 256888888888887665
No 140
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=67.67 E-value=14 Score=27.34 Aligned_cols=70 Identities=7% Similarity=0.046 Sum_probs=50.4
Q ss_pred CHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC--cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh
Q 025930 30 GLTSLLMLLGSSEDETIHRVAAGAIANLAMN--ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC 100 (246)
Q Consensus 30 ~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~--~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~ 100 (246)
++..|...|++. ++.++..|...|-.|..+ ......|.....+.-++.++....++.+++.++..+..-+
T Consensus 53 A~ral~krl~~~-n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 53 CLKAIMKRVNHK-VPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 467777888875 788888888888888766 4455566666677777777775567788877777766554
No 141
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=66.47 E-value=9 Score=28.69 Aligned_cols=72 Identities=7% Similarity=-0.046 Sum_probs=56.3
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccC------CChhHHHHHHHHH
Q 025930 114 GIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNN------EASPIRRHIELAL 187 (246)
Q Consensus 114 ~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~------~~~~v~~~a~~aL 187 (246)
++..+.+-+.++++.++-.|+.+|-.+..+ +...+...+....++..|+.++.+ .++.|+..++..+
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkN-------CG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li 123 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKN-------CGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELL 123 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-------SHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHH-------cCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHH
Confidence 356788888899999999999888877652 225777778888888999998863 3678999999888
Q ss_pred HHhcc
Q 025930 188 CHLAQ 192 (246)
Q Consensus 188 ~~La~ 192 (246)
..-+.
T Consensus 124 ~~W~~ 128 (171)
T 1juq_A 124 YSWTM 128 (171)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87754
No 142
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=65.34 E-value=13 Score=29.08 Aligned_cols=70 Identities=9% Similarity=0.077 Sum_probs=54.3
Q ss_pred CHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC--cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh
Q 025930 30 GLTSLLMLLGSSEDETIHRVAAGAIANLAMN--ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC 100 (246)
Q Consensus 30 ~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~--~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~ 100 (246)
++..|...|++. ++.++..|+..|-.+..+ +.-...|.....+..|..+++...++.+++.++..+...+
T Consensus 46 a~ral~krl~~~-n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 46 AVNSIKKKVNDK-NPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWA 117 (226)
T ss_dssp HHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 377888888875 888899999999888877 3455666666777777777776677888888888887665
No 143
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=61.87 E-value=12 Score=27.35 Aligned_cols=67 Identities=12% Similarity=-0.005 Sum_probs=48.6
Q ss_pred ChHHHHHcccCCChhHHHHHHHHHHHhccC--chhHHHHHhCCcHHHHHHHHhc-----CCHHHHHHHHHHHHc
Q 025930 164 ALPWIVQNSNNEASPIRRHIELALCHLAQH--EVNAKDMISGGALWELVRISRD-----CSREDIRTLAHRTLT 230 (246)
Q Consensus 164 ~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~--~~~~~~i~~~g~i~~L~~ll~~-----~~~~~~~~~A~~~L~ 230 (246)
++..|..-+++.++.++..|+..|-.+..| ..-...+.....+..|++++.. ..+..++.-+...+.
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~ 112 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILF 112 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHH
Confidence 567777788889999999999998888764 3345666667788888888863 235666666555553
No 144
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=61.65 E-value=75 Score=27.02 Aligned_cols=106 Identities=16% Similarity=0.134 Sum_probs=69.2
Q ss_pred CcHHHHHHHHhcCCChHHHHHHHHHHHHhh-CCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhh--------
Q 025930 71 GGIGLLSTTAANAEDPQTLRMVAGAIANLC-GNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFA-------- 141 (246)
Q Consensus 71 g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~-~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~-------- 141 (246)
+.++.++.+..+ .+.++++..+..|...+ ...+... .+++.|..++.++++.+.+.++.+..++-
T Consensus 63 ~fl~~il~f~~d-~~~~vRk~~a~FieEa~~~~~el~~-----~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~ 136 (386)
T 3o2t_A 63 NFLDEIIAFQAD-KSIEVRKFVIGFIEEACKRDIELLL-----KLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMV 136 (386)
T ss_dssp GGHHHHHGGGGC-SCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccC-CcHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666666665 47889999999998887 3333322 24677888888889999998887776653
Q ss_pred cccccccccCCh----hhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHh
Q 025930 142 KCESRASTQGTK----TGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHL 190 (246)
Q Consensus 142 ~~~~~~~~~~~~----~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~L 190 (246)
..+ ..+ +.=+.|. ..-..++.+..+++..+|..+.+.+..+
T Consensus 137 ~~~------~~~~~~e~~W~~m~--~lK~~Il~~~ds~n~GVrl~aiKFle~V 181 (386)
T 3o2t_A 137 KSR------VISELQEACWDMVS--AMAGDIILLLDSDNDGIRTHAIKFVEGL 181 (386)
T ss_dssp HC-------CCCHHHHHHHHHHH--HHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred cCC------CcchhHHHHHHHHH--HHHHHHHHHhccCCcchHHHHHHHHHHH
Confidence 110 111 1111111 1223566677788999999999888776
No 145
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=60.52 E-value=61 Score=25.61 Aligned_cols=100 Identities=9% Similarity=0.089 Sum_probs=63.0
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhcC--CcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHHH
Q 025930 32 TSLLMLLGSSEDETIHRVAAGAIANLAM--NETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKL 109 (246)
Q Consensus 32 ~~Li~ll~~~~~~~~~~~a~~~L~~la~--~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l 109 (246)
+.+-..+...+.-.+++.++.++..++. +++. .++.+.....+ +|+.++..|...+..-+..+..+..
T Consensus 106 ~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~--------~l~~~~~W~~d-~n~~VRR~Ase~~rpW~~~~~~k~d- 175 (240)
T 3l9t_A 106 IFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK--------ALPIIDEWLKS-SNLHTRRAATEGLRIWTNRPYFKEN- 175 (240)
T ss_dssp HHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT--------THHHHHHHHHC-SSHHHHHHHHHHTCSGGGSTTTTTC-
T ss_pred HHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH--------HHHHHHHHhcC-CCHHHHHHHHHhhHHHhccchhhcC-
Confidence 3333334334566778888888888764 3321 45666677777 6899998888777543321111100
Q ss_pred HhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 025930 110 RGEGGIKALLGMVRCGHPDVLAQVARGIANFAK 142 (246)
Q Consensus 110 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~ 142 (246)
-.-+++.+-.+..+++.-+++.++..|..++.
T Consensus 176 -p~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK 207 (240)
T 3l9t_A 176 -PNEAIRRIADLKEDVSEYVRKSVGNALRDISK 207 (240)
T ss_dssp -HHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhh
Confidence 00135555556667788899999999999996
No 146
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=59.09 E-value=18 Score=28.02 Aligned_cols=69 Identities=7% Similarity=0.098 Sum_probs=51.4
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcCC--cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh
Q 025930 31 LTSLLMLLGSSEDETIHRVAAGAIANLAMN--ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC 100 (246)
Q Consensus 31 i~~Li~ll~~~~~~~~~~~a~~~L~~la~~--~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~ 100 (246)
+..|...|+++ ++.++..|...|-.+..+ +.....|.+...+.-|..++.+..+.++++.++..+..-+
T Consensus 44 ~r~l~krl~~~-n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 44 FAAIKKKMNSP-NPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHTCS-SHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 67778888885 888888899888888777 4455666666677777777776567788877777766554
No 147
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=53.59 E-value=31 Score=24.71 Aligned_cols=69 Identities=10% Similarity=0.083 Sum_probs=46.3
Q ss_pred CHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC--cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh
Q 025930 30 GLTSLLMLLGSSEDETIHRVAAGAIANLAMN--ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC 100 (246)
Q Consensus 30 ~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~--~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~ 100 (246)
++..+...|+++ ++.++..|...|-.|..+ ..-...+.....+.-+..+++. .++.+++.++..+..-+
T Consensus 43 a~rai~Krl~~~-n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~-~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 43 CLRSIMRRVNHK-DPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNK-GHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC-ChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHH
Confidence 366777778775 777888888887777666 3334445555566666666665 56778777777776554
No 148
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=53.22 E-value=14 Score=28.73 Aligned_cols=66 Identities=11% Similarity=0.036 Sum_probs=48.2
Q ss_pred ChHHHHHcccCCChhHHHHHHHHHHHhccCch--hHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 025930 164 ALPWIVQNSNNEASPIRRHIELALCHLAQHEV--NAKDMISGGALWELVRISRDCSREDIRTLAHRTL 229 (246)
Q Consensus 164 ~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~~--~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L 229 (246)
++..|..-+...++.++..|+..|-.+..|-. -...+.+...+..|+.++.+..+..+++-+.+.+
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li 110 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELV 110 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 46677777788999999999999998876432 3455556667888888887666667776666544
No 149
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=53.11 E-value=69 Score=26.99 Aligned_cols=109 Identities=11% Similarity=0.020 Sum_probs=64.1
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCc-HHHHHHHHhc----C---CChHHHHHHHHHHHHhhCC
Q 025930 31 LTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGG-IGLLSTTAAN----A---EDPQTLRMVAGAIANLCGN 102 (246)
Q Consensus 31 i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~-i~~L~~ll~~----~---~~~~~~~~a~~aL~~L~~~ 102 (246)
+..++...-....+..+.-++++++|+=.++...+.+..... ...++..+.. . .+..++..++..+.|++..
T Consensus 200 l~~li~~~~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~ 279 (362)
T 3l3f_X 200 IKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSAL 279 (362)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHH
Confidence 444443332233677888899999999888764444443221 2233433311 1 2456787888888999821
Q ss_pred -chhHHHHHhcCCHHHHHHHhc---------CCCHHHHHHHHHHHHHhhc
Q 025930 103 -DKLQLKLRGEGGIKALLGMVR---------CGHPDVLAQVARGIANFAK 142 (246)
Q Consensus 103 -~~~~~~l~~~g~i~~L~~ll~---------~~~~~~~~~a~~~L~nL~~ 142 (246)
...+. +......+++++. ..+++....++-++++|..
T Consensus 280 ~~~~~~---~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~ 326 (362)
T 3l3f_X 280 VTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 326 (362)
T ss_dssp HHHTCS---CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred Hhcccc---hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHh
Confidence 10000 0123345566555 2588999999999999983
No 150
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=52.86 E-value=98 Score=26.70 Aligned_cols=98 Identities=11% Similarity=0.026 Sum_probs=60.7
Q ss_pred CCHHHHHHHHHHHHHhcCCcchHHHHHhcC-cHHHHHHHHhcC-------CChHHHHHHHHHHHHhhCC-chhHHHHHhc
Q 025930 42 EDETIHRVAAGAIANLAMNETNQELIMTQG-GIGLLSTTAANA-------EDPQTLRMVAGAIANLCGN-DKLQLKLRGE 112 (246)
Q Consensus 42 ~~~~~~~~a~~~L~~la~~~~~~~~i~~~g-~i~~L~~ll~~~-------~~~~~~~~a~~aL~~L~~~-~~~~~~l~~~ 112 (246)
..+..+.-++++++|+-.++.....+.... ....++..+... .+..++..++..+.|++.. ...+. +.
T Consensus 274 ~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~---~~ 350 (425)
T 3pst_A 274 KNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DL 350 (425)
T ss_dssp SSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS---CT
T ss_pred CChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---hH
Confidence 367788889999999988876444444322 234455444211 2456787888888999821 10000 01
Q ss_pred CCHHHHHHHhc---------CCCHHHHHHHHHHHHHhhc
Q 025930 113 GGIKALLGMVR---------CGHPDVLAQVARGIANFAK 142 (246)
Q Consensus 113 g~i~~L~~ll~---------~~~~~~~~~a~~~L~nL~~ 142 (246)
..+..++.++. ..+++....++-+|++|..
T Consensus 351 el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~ 389 (425)
T 3pst_A 351 ELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 389 (425)
T ss_dssp THHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHh
Confidence 23345555554 2478899999999999984
No 151
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=49.80 E-value=41 Score=24.98 Aligned_cols=70 Identities=10% Similarity=-0.059 Sum_probs=52.6
Q ss_pred CHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC--cchHHHHHhcCcHHHHHHHHhc-----CCChHHHHHHHHHHHHhh
Q 025930 30 GLTSLLMLLGSSEDETIHRVAAGAIANLAMN--ETNQELIMTQGGIGLLSTTAAN-----AEDPQTLRMVAGAIANLC 100 (246)
Q Consensus 30 ~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~--~~~~~~i~~~g~i~~L~~ll~~-----~~~~~~~~~a~~aL~~L~ 100 (246)
++..|...++++ ++.++..|...|-.|..+ ......|.....+.-|+.++.. ..+..+++.++..+..-+
T Consensus 51 A~ral~krl~~~-n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 51 AVRLLAHKIQSP-QEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 477788888886 888888899999888877 4455667777778888888763 235788888887777655
No 152
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=48.00 E-value=64 Score=24.02 Aligned_cols=75 Identities=12% Similarity=0.125 Sum_probs=56.7
Q ss_pred hhhhHHHHhCCChHHHHHcccCC------ChhHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhc-CCHHHHHHHH
Q 025930 153 KTGRSLLIDDGALPWIVQNSNNE------ASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRD-CSREDIRTLA 225 (246)
Q Consensus 153 ~~~~~~l~~~g~i~~Lv~ll~~~------~~~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~-~~~~~~~~~A 225 (246)
.+.+..+++.|++..+..-|.+- +-.+|...+.+|..|-- .++.+.++|.-..++.+-++ ...+..+..|
T Consensus 66 ~~L~~~~ld~giL~~l~~WLePLpDgSLP~~~Ir~~lL~~L~~lPI---~~e~Lk~SglGkvV~~l~k~~~et~~nkrla 142 (170)
T 3nfq_A 66 ANLADTILDNNLLQSVRIWLEPLPDGSLPSFEIQKSLFAALNDLPV---KTEHLKESGLGRVVIFYTKSKRVEAQLARLA 142 (170)
T ss_dssp GGGHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSCC---CHHHHHHHSHHHHHHHHHHCTTSCHHHHHHH
T ss_pred HHHHHHHHHcchHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHCCC---CHHHHhhCCCCceeeehhcCCcccHHHHHHH
Confidence 57788888999999887777542 56899999999999853 45678888888877766654 3456677888
Q ss_pred HHHHc
Q 025930 226 HRTLT 230 (246)
Q Consensus 226 ~~~L~ 230 (246)
.+++.
T Consensus 143 ~~Li~ 147 (170)
T 3nfq_A 143 EKLIA 147 (170)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87774
No 153
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=46.26 E-value=1.2e+02 Score=24.89 Aligned_cols=127 Identities=13% Similarity=0.039 Sum_probs=80.3
Q ss_pred hHHhHhhccccccHHHHHH--hCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhc--CcHHHHHHHHhc-
Q 025930 9 ISVKSEDIRAQSNQEKIVE--AGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQ--GGIGLLSTTAAN- 82 (246)
Q Consensus 9 ~~~~~~~~~~~~~~~~i~~--~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~--g~i~~L~~ll~~- 82 (246)
+--|-+++...++=.+|++ ...+..|+ +..+ .++.+++.|+++|+.+-.+ |+.-..|.+. ..+..++.-+..
T Consensus 49 LD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~-~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~~L~~~ 126 (315)
T 3qml_C 49 FDRIMEFAHDYKHGYKIITHEFALLANLS-LNEN-LPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMAALSNL 126 (315)
T ss_dssp HHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTT-SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhcc-CChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 3445566777777777775 34455555 2233 4777888899999999877 5555555442 223333332222
Q ss_pred ---C--CChHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhcCC--CHHHHHHHHHHHHHhh
Q 025930 83 ---A--EDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCG--HPDVLAQVARGIANFA 141 (246)
Q Consensus 83 ---~--~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~~~--~~~~~~~a~~~L~nL~ 141 (246)
. ....+.+.-+++|..|..++. .+ ...++..|..++..+ +++++.+++..+..+-
T Consensus 127 ~~~~~~~~~~l~KR~LsII~~L~~~~~---~F-~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 127 NDSNHRSSNILIKRYLSILNELPVTSE---DL-PIYSTVVLQNVYERNNKDKQLQIKVLELISKIL 188 (315)
T ss_dssp HCC--CCCHHHHHHHHHHHHHSCCCST---TC---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred hhcccchhHHHHHHHHHHHHHHhcChH---hh-hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHc
Confidence 1 234567788899999986652 12 134678888888766 8999999988887544
No 154
>1zoq_C CREB-binding protein, interferon regulatory factor 3; transcription regulation, transferase, transcription/transferase complex; 2.37A {Homo sapiens} SCOP: a.153.1.1 PDB: 1jjs_A
Probab=42.48 E-value=45 Score=18.79 Aligned_cols=35 Identities=26% Similarity=0.308 Sum_probs=28.7
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHccChhHHHHH
Q 025930 205 ALWELVRISRDCSREDIRTLAHRTLTSSPAFQAEM 239 (246)
Q Consensus 205 ~i~~L~~ll~~~~~~~~~~~A~~~L~~~~~~~~e~ 239 (246)
++..|++-+++++.++........|+++|..-+..
T Consensus 2 aLqqLl~tlksp~sp~qqqqvl~ILksnPqLMAAf 36 (47)
T 1zoq_C 2 ALQDLLRTLKSPSSPQQQQQVLNILKSNPQLMAAF 36 (47)
T ss_dssp HHHHHHHTCCSCCCHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHcCHHHHHHH
Confidence 56778888888888888899999999999876654
No 155
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=40.44 E-value=51 Score=24.03 Aligned_cols=72 Identities=7% Similarity=-0.015 Sum_probs=51.3
Q ss_pred CHHHHHHHhc-CCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHH-HHHcccC---CChhHHHHHHHHHH
Q 025930 114 GIKALLGMVR-CGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPW-IVQNSNN---EASPIRRHIELALC 188 (246)
Q Consensus 114 ~i~~L~~ll~-~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~-Lv~ll~~---~~~~v~~~a~~aL~ 188 (246)
++..+.+-++ ++++.++-.|+.+|-.+..+ +.+.+...+.....+.. |+.++.+ .+..|++.++..+.
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkN-------cG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~ 126 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKN-------CGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQ 126 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH-------SCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHH-------hCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHH
Confidence 3566777776 47888888888888777653 33677777777778887 7887743 24578888887777
Q ss_pred Hhcc
Q 025930 189 HLAQ 192 (246)
Q Consensus 189 ~La~ 192 (246)
.-+.
T Consensus 127 ~W~~ 130 (157)
T 1elk_A 127 SWAD 130 (157)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6643
No 156
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=37.70 E-value=81 Score=22.92 Aligned_cols=70 Identities=13% Similarity=0.023 Sum_probs=45.0
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcCC--cchHHHHHhcCcHHH-HHHHHhc--CCChHHHHHHHHHHHHhh
Q 025930 31 LTSLLMLLGSSEDETIHRVAAGAIANLAMN--ETNQELIMTQGGIGL-LSTTAAN--AEDPQTLRMVAGAIANLC 100 (246)
Q Consensus 31 i~~Li~ll~~~~~~~~~~~a~~~L~~la~~--~~~~~~i~~~g~i~~-L~~ll~~--~~~~~~~~~a~~aL~~L~ 100 (246)
+..|...+++..++.++..|...|-.|..+ +.-...+.+...+.- |+.++.. ..+..+++.++..+..-+
T Consensus 55 ~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 55 LRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence 667777776534777778888888888766 445555666666665 6666642 123567777776665544
No 157
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=37.45 E-value=1.9e+02 Score=24.64 Aligned_cols=63 Identities=16% Similarity=0.128 Sum_probs=38.3
Q ss_pred cccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHH------------h---cCcHHHHHHHHhc
Q 025930 19 QSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIM------------T---QGGIGLLSTTAAN 82 (246)
Q Consensus 19 ~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~------------~---~g~i~~L~~ll~~ 82 (246)
+...+..++...+-.|+.++++. |+.-+...-.+|.++-.. ...|..|. + .+|+.-|+.++.+
T Consensus 119 ~~~~k~~id~~Fi~~Ll~lfdSe-DprER~~LktiLhrIY~kf~~~R~~Irk~innif~~fiye~e~~~GIaeLLeilgs 197 (403)
T 3fga_B 119 PNIAKKYIDQKFVLQLLELFDSE-DPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGS 197 (403)
T ss_dssp HHHHTTTSCHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred hhhHHhhcCHHHHHHHHHHcCCC-ChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHH
Confidence 33345566667789999999997 776566666666655322 33332221 1 4677777766544
No 158
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=36.62 E-value=1.6e+02 Score=23.37 Aligned_cols=141 Identities=12% Similarity=0.062 Sum_probs=82.5
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh-CCchhHHHHHhc
Q 025930 34 LLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC-GNDKLQLKLRGE 112 (246)
Q Consensus 34 Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~-~~~~~~~~l~~~ 112 (246)
|++-.+...+ ..+.....-...+..+.+. ..+ .+.++-++.+..+ .+.++++..+..+...+ ..++....
T Consensus 20 lln~A~~~~~-~~kl~~L~qa~el~~~~dp-~ll--~~~l~~il~~~~~-~~~~vrk~~~~Fi~e~~~~k~~l~~~---- 90 (257)
T 3gs3_A 20 WCNELVIASP-STKCELLAKVQETVLGSCA-ELA--EEFLESVLSLAHD-SNMEVRKQVVAFVEQVCKVKVELLPH---- 90 (257)
T ss_dssp HHHHHTTCCH-HHHHHHHHHHHHHHTTTTG-GGH--HHHHHHHHGGGGC-SCHHHHHHHHHHHHHHHHHCGGGHHH----
T ss_pred HHHHhhhcCc-HHHHHHHHHHHHHHHccCH-hHH--HHHHHHHHHhccC-ChHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 4444444333 3344456666666554211 111 1235555565545 67889999999998887 33333222
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHhh--------cccccccccCCh-hhhHHHHh-CCChHHHHHcccCCChhHHHH
Q 025930 113 GGIKALLGMVRCGHPDVLAQVARGIANFA--------KCESRASTQGTK-TGRSLLID-DGALPWIVQNSNNEASPIRRH 182 (246)
Q Consensus 113 g~i~~L~~ll~~~~~~~~~~a~~~L~nL~--------~~~~~~~~~~~~-~~~~~l~~-~g~i~~Lv~ll~~~~~~v~~~ 182 (246)
.++.|..++..+++.+.+.++.+..++- .++ +.+ ...+.-.. ...-..++.+..+++..+|..
T Consensus 91 -~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~------~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~ 163 (257)
T 3gs3_A 91 -VINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLM------EPGDSAEQAWNILSLIKAQILDMIDNENDGIRTN 163 (257)
T ss_dssp -HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTSS------SCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHH
T ss_pred -HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCC------CCcchHHHHHHHHHHHHHHHHHHHccCCcchHHH
Confidence 4677888888889999999887666643 111 100 01111000 112336677778889999999
Q ss_pred HHHHHHHh
Q 025930 183 IELALCHL 190 (246)
Q Consensus 183 a~~aL~~L 190 (246)
+.+.+..+
T Consensus 164 ~iKF~e~v 171 (257)
T 3gs3_A 164 AIKFLEGV 171 (257)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99888775
No 159
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=36.40 E-value=3.2e+02 Score=26.83 Aligned_cols=128 Identities=9% Similarity=-0.065 Sum_probs=77.9
Q ss_pred CCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHh-cCCChHHHHHHHHHHHHhh------CCchhHHHHHhcCC
Q 025930 42 EDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAA-NAEDPQTLRMVAGAIANLC------GNDKLQLKLRGEGG 114 (246)
Q Consensus 42 ~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~-~~~~~~~~~~a~~aL~~L~------~~~~~~~~l~~~g~ 114 (246)
.+...+..|-..|..+-.++ ++...+...+. ...+..++..|+..|.+.. .+++.+..+ +...
T Consensus 25 ~~~~~r~~Ae~~L~~~~~~p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~I-r~~l 94 (1204)
T 3a6p_A 25 STQRYRLEALKFCEEFKEKC---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYL-KNSV 94 (1204)
T ss_dssp CCHHHHHHHHHHHHHHHHHC---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHH-HHHH
T ss_pred CChHHHHHHHHHHHHHHhCc---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHH-HHHH
Confidence 36666777777777664433 24444444333 3357888989999998876 123333333 3233
Q ss_pred HHHHHHHhc---CCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhc
Q 025930 115 IKALLGMVR---CGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLA 191 (246)
Q Consensus 115 i~~L~~ll~---~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La 191 (246)
+..+...-. .....++.+.+.++..++..+ . ++ ...+.++.|++++.. ++..++.++.+|..|+
T Consensus 95 l~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d------~-p~-----~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~ 161 (1204)
T 3a6p_A 95 MELIANGTLNILEEENHIKDALSRIVVEMIKRE------W-PQ-----HWPDMLIELDTLSKQ-GETQTELVMFILLRLA 161 (1204)
T ss_dssp HHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHH------S-TT-----TCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHhhccccccccHHHHHHHHHHHHHHHHHh------C-cc-----cchHHHHHHHHHhcC-CHHHHHHHHHHHHHHH
Confidence 333332211 135778888888888887531 1 11 134678889988865 5667888888888886
Q ss_pred c
Q 025930 192 Q 192 (246)
Q Consensus 192 ~ 192 (246)
.
T Consensus 162 E 162 (1204)
T 3a6p_A 162 E 162 (1204)
T ss_dssp H
T ss_pred H
Confidence 4
No 160
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=31.14 E-value=1.4e+02 Score=21.27 Aligned_cols=71 Identities=10% Similarity=0.048 Sum_probs=46.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCC-hHHHHHcccCCC--------hhHHHHHHH
Q 025930 115 IKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGA-LPWIVQNSNNEA--------SPIRRHIEL 185 (246)
Q Consensus 115 i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~-i~~Lv~ll~~~~--------~~v~~~a~~ 185 (246)
++.|.+-|.++++.++.+|+.+|-.|+.. +++.++..+...-. |..+.+.=..++ ..||..|-.
T Consensus 51 m~~L~kRL~~k~~~vk~KaL~lL~yL~~~-------Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkE 123 (140)
T 1vdy_A 51 SEFILKRLDNKSPIVKQKALRLIKYAVGK-------SGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHE 123 (140)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHHHTTT-------SCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCcceeehHHHHHHHHHHh-------CCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHH
Confidence 56678888888889999999999999974 66777777775532 222222222212 457777766
Q ss_pred HHHHhcc
Q 025930 186 ALCHLAQ 192 (246)
Q Consensus 186 aL~~La~ 192 (246)
++..|-.
T Consensus 124 l~~ll~d 130 (140)
T 1vdy_A 124 TISAIFS 130 (140)
T ss_dssp HHHHHTC
T ss_pred HHHHHhC
Confidence 6655533
No 161
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=29.68 E-value=83 Score=26.74 Aligned_cols=65 Identities=11% Similarity=-0.002 Sum_probs=47.5
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHh
Q 025930 113 GGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHL 190 (246)
Q Consensus 113 g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~L 190 (246)
..++.++.+-..++.++++.++..+...+.. ..+. . ..+++.|..++.++++.+.+.+..+..++
T Consensus 63 ~fl~~il~f~~d~~~~vRk~~a~FieEa~~~--------~~el----~-~~~l~~L~~LL~d~d~~V~K~~I~~~tsl 127 (386)
T 3o2t_A 63 NFLDEIIAFQADKSIEVRKFVIGFIEEACKR--------DIEL----L-LKLIANLNMLLRDENVNVVKKAILTMTQL 127 (386)
T ss_dssp GGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--------CGGG----H-HHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHHH--------HHHH----H-HHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 4578888888888899999999998887731 1121 1 24577888888888888888877666555
No 162
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=28.52 E-value=2.5e+02 Score=23.10 Aligned_cols=132 Identities=6% Similarity=-0.017 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHh-cCCChHHHHHHHHHHHHhh-CCchhHHHHHhc--CCHHHHHHH
Q 025930 46 IHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAA-NAEDPQTLRMVAGAIANLC-GNDKLQLKLRGE--GGIKALLGM 121 (246)
Q Consensus 46 ~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~-~~~~~~~~~~a~~aL~~L~-~~~~~~~~l~~~--g~i~~L~~l 121 (246)
....|...|..++.|-+.-..|.+.. ...|-+++. ...++.+++.++++|...- +||.....+.+. ..+..++.-
T Consensus 44 ~le~aLD~L~ElSHDi~~G~KI~~~e-f~lL~nL~~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~~ 122 (315)
T 3qml_C 44 RLEDSFDRIMEFAHDYKHGYKIITHE-FALLANLSLNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMAA 122 (315)
T ss_dssp HHHHHHHHHGGGTTSHHHHHHHHHHH-HHHHHHHHHCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHhhhHHHhCc-HHHHHHHHhhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHHH
Confidence 35568889999999977777777643 555555542 2256788999999997655 778777766543 234444433
Q ss_pred hcC-------CCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCC--ChhHHHHHHHHHHHhc
Q 025930 122 VRC-------GHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNE--ASPIRRHIELALCHLA 191 (246)
Q Consensus 122 l~~-------~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~--~~~v~~~a~~aL~~La 191 (246)
|.. ....+.+.-++++-.|... ..++. ...+..|..++... ++.++..++..+..+=
T Consensus 123 L~~~~~~~~~~~~~l~KR~LsII~~L~~~--------~~~F~-----~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 123 LSNLNDSNHRSSNILIKRYLSILNELPVT--------SEDLP-----IYSTVVLQNVYERNNKDKQLQIKVLELISKIL 188 (315)
T ss_dssp HHHHHCC--CCCHHHHHHHHHHHHHSCCC--------STTC-------CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcccchhHHHHHHHHHHHHHHhcC--------hHhhh-----hccHHHHHHHHccCCCCHHHHHHHHHHHHHHc
Confidence 322 2345778888888888842 11221 34567777777666 8899998877777663
No 163
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=27.84 E-value=1.7e+02 Score=21.03 Aligned_cols=90 Identities=13% Similarity=0.188 Sum_probs=58.7
Q ss_pred hhhhHHhHhhccccccHHHHHHhCCHHHHHHHhcCCC-----CHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHH
Q 025930 6 LNTISVKSEDIRAQSNQEKIVEAGGLTSLLMLLGSSE-----DETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTA 80 (246)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~i~~~g~i~~Li~ll~~~~-----~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll 80 (246)
++++.-+.........+..+++.|++..+=.||.--+ +..+++....+|.++..+ ++.+.+.|.-..+.-+-
T Consensus 38 lklL~~V~~~l~k~~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lPI~---~e~Lk~SglGkvv~~l~ 114 (145)
T 2xpp_A 38 IENVEEISDILMSKALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMKIH---KEHLVTSGVGKIVYFYS 114 (145)
T ss_dssp HHHHHHHHHHHTCTTTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSCCC---HHHHHHHCHHHHHHHHH
T ss_pred HhhHHHHHHHHhhHHHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCCCC---HHHhhcCCCCcchhhhh
Confidence 3445545555556677899999999999999997633 345788888888888543 66777765555554444
Q ss_pred hcC-CChHHHHHHHHHHHH
Q 025930 81 ANA-EDPQTLRMVAGAIAN 98 (246)
Q Consensus 81 ~~~-~~~~~~~~a~~aL~~ 98 (246)
++. +.++.++.|-..+..
T Consensus 115 k~~~et~~nk~la~~Li~~ 133 (145)
T 2xpp_A 115 INPKESKEVRASAKALVQK 133 (145)
T ss_dssp HCTTSCHHHHHHHHHHHHH
T ss_pred cCCccCHHHHHHHHHHHHH
Confidence 432 235566666555544
No 164
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=26.71 E-value=83 Score=22.55 Aligned_cols=67 Identities=13% Similarity=0.150 Sum_probs=43.4
Q ss_pred ChHHHHHcccCCChhHHHHHHHHHHHhcc--CchhHHHHHhC-CcHHHHHHHHhcC-------CHHHHHHHHHHHHc
Q 025930 164 ALPWIVQNSNNEASPIRRHIELALCHLAQ--HEVNAKDMISG-GALWELVRISRDC-------SREDIRTLAHRTLT 230 (246)
Q Consensus 164 ~i~~Lv~ll~~~~~~v~~~a~~aL~~La~--~~~~~~~i~~~-g~i~~L~~ll~~~-------~~~~~~~~A~~~L~ 230 (246)
+.+.|..-|...++.++..|+.+|-+|+. ++..+..+.+. ..|..+..+--.+ ....+|..|.+++.
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ 126 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETIS 126 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHH
Confidence 56777888888889999999999999986 44445555543 3333333222111 13677888887764
No 165
>3qrx_B Melittin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 1bh1_A 2mlt_A
Probab=21.69 E-value=31 Score=16.65 Aligned_cols=14 Identities=21% Similarity=0.351 Sum_probs=11.5
Q ss_pred HhCCHHHHHHHhcC
Q 025930 27 EAGGLTSLLMLLGS 40 (246)
Q Consensus 27 ~~g~i~~Li~ll~~ 40 (246)
-++++|+++++.+.
T Consensus 9 La~~LP~liSWiK~ 22 (26)
T 3qrx_B 9 LTTGLPALISWIKR 22 (26)
T ss_pred HHccchHHHHHHHH
Confidence 36889999999875
Done!