BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025931
(246 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|C4Y2Z9|SEY1_CLAL4 Protein SEY1 OS=Clavispora lusitaniae (strain ATCC 42720) GN=SEY1
PE=3 SV=1
Length = 834
Score = 35.4 bits (80), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 165 AIMKNRYVFT------GASWVAGAFNKVAQAAGEVGQKAKEKAGMAEEEQKRKMVDDFAQ 218
AI++N + FT GA++V + N + A+ V + A E G+A+E+ + +VDD Q
Sbjct: 752 AILRNPFFFTLLIMLAGATYVMYSMNLLGPASIVVQRMANEALGLAKEKLREFVVDDHMQ 811
>sp|P13611|CSPG2_HUMAN Versican core protein OS=Homo sapiens GN=VCAN PE=1 SV=3
Length = 3396
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 150 SAFVAAEQKVSSVGSAIMKNRYVFTGASWVAGAFNKVAQAAGEVGQKAKEKAGMAEEEQK 209
SA+V+ E+ V+ +G+ + + T SWV +V + +G E +G AEE++
Sbjct: 1592 SAYVSEEEAVTLIGNP-WPDDLLSTKESWVEATPRQVVELSGSSSIPITEGSGEAEEDED 1650
Query: 210 R--KMVDDFAQ 218
MV D +Q
Sbjct: 1651 TMFTMVTDLSQ 1661
>sp|Q7Z2Y8|GVIN1_HUMAN Interferon-induced very large GTPase 1 OS=Homo sapiens GN=GVINP1 PE=2
SV=2
Length = 2422
Score = 32.7 bits (73), Expect = 2.5, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 121 SEKISVGTSVVSDRVREVDQKFQVSEKTKS--------AFVAAEQKVSSVGSAIMKNRYV 172
S +IS T + +REV Q ++ E+ S +AA+ +S V +M
Sbjct: 1400 STEISDCTLGIEQLIREVGQIYEALEEASSIKKIFFSLPQIAADLMISGVPIELMDGDAA 1459
Query: 173 FTGASWVAGAFNKVAQAAGE 192
+ +WVA F+KV++ G+
Sbjct: 1460 YVPLTWVAAVFDKVSEKLGD 1479
>sp|Q6KIP9|LDH_MYCMO L-lactate dehydrogenase OS=Mycoplasma mobile (strain ATCC 43663 /
163K / NCTC 11711) GN=ldh PE=3 SV=1
Length = 318
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 13/79 (16%)
Query: 114 FDKKIGFSEKISVGTSVVSDRVR-EVDQKFQVSEKTKSAFVAAEQKVSSVGSAIMKNRYV 172
FDK + IS GTS+ S R+R E+ +K +V K+ AFV E SSV V
Sbjct: 138 FDK----NRVISSGTSLDSARLRFEISKKLKVHPKSVQAFVLGEHGDSSVS--------V 185
Query: 173 FTGASWVAGAFNKVAQAAG 191
++ A+ +FN++ + G
Sbjct: 186 YSAATVSGKSFNEIVKERG 204
>sp|Q87TT0|ATPF_PSESM ATP synthase subunit b OS=Pseudomonas syringae pv. tomato (strain
DC3000) GN=atpF PE=3 SV=1
Length = 156
Score = 32.3 bits (72), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 29 GATIVDLSVS----ISLAPDYQLPPAASALHETKNKTPNGAESALRKAEDV 75
AT++ SV+ + Y PP +ALHE + K +G ++A R A D+
Sbjct: 4 NATLIGQSVAFFIFVLFCMKYVWPPVIAALHERQKKIADGLDAASRAARDL 54
>sp|Q8XI02|SYT_CLOPE Threonine--tRNA ligase OS=Clostridium perfringens (strain 13 / Type
A) GN=thrS PE=3 SV=1
Length = 643
Score = 31.6 bits (70), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 84 FILGKDAVFKAKTFDEK---HQFTSTASAKVASFDKKIGFSEKISVGTSV 130
FI+ +D+ + TFD K H F TAS +A+ K++ +K+++G S+
Sbjct: 49 FIVNEDSSLEICTFDSKEGQHAFNHTASHVLAAAVKRLFPQDKLAIGPSI 98
>sp|Q0TMX8|SYT_CLOP1 Threonine--tRNA ligase OS=Clostridium perfringens (strain ATCC
13124 / NCTC 8237 / Type A) GN=thrS PE=3 SV=1
Length = 643
Score = 31.6 bits (70), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 84 FILGKDAVFKAKTFDEK---HQFTSTASAKVASFDKKIGFSEKISVGTSV 130
FI+ +D+ + TFD K H F TAS +A+ K++ +K+++G S+
Sbjct: 49 FIVNEDSSLEICTFDSKEGQHAFNHTASHVLAAAVKRLFPQDKLAIGPSI 98
>sp|Q0SQM4|SYT_CLOPS Threonine--tRNA ligase OS=Clostridium perfringens (strain SM101 /
Type A) GN=thrS PE=3 SV=1
Length = 643
Score = 31.6 bits (70), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 84 FILGKDAVFKAKTFDEK---HQFTSTASAKVASFDKKIGFSEKISVGTSV 130
FI+ +D+ + TFD K H F TAS +A+ K++ +K+++G S+
Sbjct: 49 FIVNEDSSLEICTFDSKEGQHAFNHTASHVLAAAVKRLFPQDKLAIGPSI 98
>sp|P87216|VIPI_SCHPO Protein vip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=vip1 PE=1 SV=1
Length = 257
Score = 31.2 bits (69), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 105/255 (41%), Gaps = 70/255 (27%)
Query: 8 TQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAPDYQLPPAASALHETKNKTPNGAES 67
TQ A + F+ +TA+LL A + + I+ + AAS T ++ G +
Sbjct: 40 TQTAKIQFERPSATKTALLLQDALLGQNKIQIT----SEDGGAAS----TTDQGGAGGDQ 91
Query: 68 ALRKAED-----VVSSMLAKGFILGKDAVFKAKTFDEKHQFTS-------TASAKVASFD 115
A R+ ED ++S +L++G+ L + K+ D+ + +S +A + V S +
Sbjct: 92 AARQ-EDKPRSAIISELLSRGYHLSDVTLEKSIQLDQSYGVSSKFKGILESALSGVRSVN 150
Query: 116 KKIGFSEKISVGTSVVSDRVREVDQKFQVSEKTKSAFVAAEQKVSSVGSAIMKNRYVFTG 175
++ +EK EVD KF +S+K NR
Sbjct: 151 ERYHVTEK-----------ANEVDNKFAISDKL--------------------NRT---- 175
Query: 176 ASWVAGAFNKVAQAAGEVGQKAKEKAGMAEEEQK----------RKMVDDFAQVHLAESP 225
+S V+ F+K + A G A +K A E+ K R++ D Q SP
Sbjct: 176 SSLVSTYFHKALETA--AGTSAGQKVQNAYEDGKNQLLGIHNEARRLADAKNQAEGTASP 233
Query: 226 KTSSPSGHQPSKTEP 240
+S+P+ P++ EP
Sbjct: 234 ASSTPTA--PAEKEP 246
>sp|Q8NEL9|DDHD1_HUMAN Phospholipase DDHD1 OS=Homo sapiens GN=DDHD1 PE=1 SV=2
Length = 900
Score = 31.2 bits (69), Expect = 6.8, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 15/98 (15%)
Query: 85 ILGKDAVFKAK---------TFDEKHQFTSTASAKVA-SFDKKIGFSEKISVGTSVVSDR 134
I GKDAV K + DE + ++ ++K+A + +K+GFS+ S GT +
Sbjct: 333 IDGKDAVHSFKLSRNHVDWHSVDEVYLYSDATTSKIARTVTQKLGFSKASSSGTRLHRGY 392
Query: 135 VREVDQKFQVSEKTKSAFVAAEQKVSSVGSAIMKNRYV 172
V E + + S+ T FV V +G + + R +
Sbjct: 393 VEEATLEDKPSQTTHIVFV-----VHGIGQKMDQGRII 425
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.122 0.327
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,213,729
Number of Sequences: 539616
Number of extensions: 2951318
Number of successful extensions: 8719
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 8708
Number of HSP's gapped (non-prelim): 61
length of query: 246
length of database: 191,569,459
effective HSP length: 114
effective length of query: 132
effective length of database: 130,053,235
effective search space: 17167027020
effective search space used: 17167027020
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 60 (27.7 bits)