Query 025931
Match_columns 246
No_of_seqs 147 out of 172
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 20:54:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025931.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025931hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nlw_A Eukaryotic translation 95.8 0.014 4.7E-07 43.4 5.3 43 3-45 55-100 (105)
2 3ucg_A Polyadenylate-binding p 95.8 0.017 5.8E-07 40.8 5.4 35 8-42 48-82 (89)
3 2dng_A Eukaryotic translation 95.7 0.02 6.7E-07 42.0 5.8 35 9-43 57-91 (103)
4 2e5g_A U6 snRNA-specific termi 95.4 0.014 4.8E-07 42.2 4.0 34 10-43 47-80 (94)
5 2hzc_A Splicing factor U2AF 65 95.4 0.012 4E-07 41.5 3.4 33 8-40 53-85 (87)
6 2e44_A Insulin-like growth fac 95.4 0.018 6E-07 41.5 4.3 33 11-43 57-90 (96)
7 3p5t_L Cleavage and polyadenyl 95.3 0.0081 2.8E-07 43.3 2.2 35 9-43 46-81 (90)
8 2mss_A Protein (musashi1); RNA 95.1 0.015 5.3E-07 40.0 3.2 34 8-41 41-74 (75)
9 2dnn_A RNA-binding protein 12; 94.9 0.019 6.5E-07 44.1 3.7 35 8-42 56-90 (109)
10 1whw_A Hypothetical protein ri 94.9 0.041 1.4E-06 39.8 5.2 36 9-44 51-87 (99)
11 2dh8_A DAZ-associated protein 94.9 0.034 1.1E-06 40.8 4.8 35 9-43 59-93 (105)
12 3mdf_A Peptidyl-prolyl CIS-tra 94.9 0.018 6.1E-07 40.3 3.1 35 8-42 49-84 (85)
13 2dgw_A Probable RNA-binding pr 94.9 0.019 6.4E-07 41.1 3.2 35 8-42 50-84 (91)
14 2dnz_A Probable RNA-binding pr 94.8 0.037 1.3E-06 39.6 4.8 35 9-43 48-83 (95)
15 2cpf_A RNA binding motif prote 94.8 0.032 1.1E-06 40.3 4.4 36 8-43 50-86 (98)
16 2dgs_A DAZ-associated protein 94.8 0.032 1.1E-06 40.5 4.3 36 8-43 52-87 (99)
17 3s7r_A Heterogeneous nuclear r 94.8 0.037 1.3E-06 39.0 4.6 33 9-41 54-86 (87)
18 1iqt_A AUF1, heterogeneous nuc 94.8 0.018 6E-07 39.6 2.7 34 8-41 41-74 (75)
19 2cqc_A Arginine/serine-rich sp 94.7 0.037 1.3E-06 39.5 4.5 34 9-42 58-92 (95)
20 1wi8_A EIF-4B, eukaryotic tran 94.7 0.025 8.4E-07 41.5 3.6 34 9-42 58-91 (104)
21 1x4a_A Splicing factor, argini 94.7 0.026 8.8E-07 41.8 3.7 35 8-42 61-96 (109)
22 1x5s_A Cold-inducible RNA-bind 94.6 0.026 8.8E-07 41.1 3.4 34 9-42 55-89 (102)
23 4a8x_A RNA-binding protein wit 94.6 0.018 6.3E-07 40.4 2.6 35 8-42 47-82 (88)
24 1wel_A RNA-binding protein 12; 94.6 0.015 5.1E-07 44.4 2.2 35 8-42 67-101 (124)
25 3bs9_A Nucleolysin TIA-1 isofo 94.6 0.033 1.1E-06 39.1 3.9 35 8-42 48-83 (87)
26 2krb_A Eukaryotic translation 94.6 0.015 5.3E-07 40.9 2.1 37 3-39 41-80 (81)
27 2cq4_A RNA binding motif prote 94.6 0.028 9.5E-07 41.9 3.6 33 9-41 68-100 (114)
28 2dnm_A SRP46 splicing factor; 94.5 0.045 1.6E-06 39.9 4.6 36 8-43 55-91 (103)
29 2dgv_A HnRNP M, heterogeneous 94.5 0.021 7.2E-07 40.7 2.7 36 8-43 48-84 (92)
30 4fxv_A ELAV-like protein 1; RN 94.5 0.036 1.2E-06 41.2 4.1 34 9-42 62-96 (99)
31 2e5h_A Zinc finger CCHC-type a 94.5 0.027 9.2E-07 40.3 3.2 33 9-41 59-92 (94)
32 2cq3_A RNA-binding protein 9; 94.4 0.063 2.1E-06 39.1 5.1 35 8-42 55-90 (103)
33 2dgx_A KIAA0430 protein; RRM d 94.4 0.041 1.4E-06 40.1 4.0 34 9-42 53-87 (96)
34 2fc8_A NCL protein; structure 94.4 0.041 1.4E-06 40.0 4.1 34 9-42 55-89 (102)
35 1x5t_A Splicing factor 3B subu 94.3 0.071 2.4E-06 38.1 5.2 35 8-42 48-83 (96)
36 2ywk_A Putative RNA-binding pr 94.3 0.053 1.8E-06 38.8 4.5 35 8-42 57-92 (95)
37 1fj7_A Nucleolin RBD1, protein 94.3 0.037 1.3E-06 40.2 3.6 34 9-42 59-92 (101)
38 2la6_A RNA-binding protein FUS 94.2 0.035 1.2E-06 40.4 3.4 34 9-42 64-98 (99)
39 2db1_A Heterogeneous nuclear r 94.2 0.033 1.1E-06 42.5 3.4 35 8-42 61-95 (118)
40 3md1_A Nuclear and cytoplasmic 94.2 0.05 1.7E-06 37.8 4.0 35 8-42 43-78 (83)
41 2cpi_A CCR4-NOT transcription 94.2 0.051 1.7E-06 40.7 4.3 34 9-42 64-98 (111)
42 2dnp_A RNA-binding protein 14; 94.2 0.059 2E-06 38.4 4.5 34 10-43 45-79 (90)
43 2cq0_A Eukaryotic translation 94.1 0.056 1.9E-06 39.4 4.4 34 9-42 58-92 (103)
44 2cpe_A RNA-binding protein EWS 94.1 0.073 2.5E-06 39.4 5.1 35 9-43 66-101 (113)
45 2cpd_A Apobec-1 stimulating pr 94.1 0.065 2.2E-06 38.9 4.6 33 10-42 53-86 (99)
46 1wez_A HnRNP H', FTP-3, hetero 94.0 0.025 8.6E-07 42.3 2.4 34 9-42 56-89 (102)
47 2jwn_A Embryonic polyadenylate 94.0 0.058 2E-06 40.6 4.5 36 8-43 78-113 (124)
48 2dgt_A RNA-binding protein 30; 94.0 0.064 2.2E-06 38.4 4.4 33 10-42 46-79 (92)
49 1x4g_A Nucleolysin TIAR; struc 94.0 0.062 2.1E-06 39.8 4.5 34 9-42 62-96 (109)
50 2kt5_A RNA and export factor-b 94.0 0.059 2E-06 40.8 4.4 36 8-43 76-112 (124)
51 2dgu_A Heterogeneous nuclear r 93.9 0.043 1.5E-06 40.2 3.4 34 10-43 47-81 (103)
52 2cpz_A CUG triplet repeat RNA- 93.9 0.058 2E-06 40.2 4.2 34 9-42 68-102 (115)
53 2d9p_A Polyadenylate-binding p 93.8 0.077 2.6E-06 38.7 4.7 36 8-43 55-91 (103)
54 2x1f_A MRNA 3'-END-processing 93.8 0.066 2.3E-06 38.6 4.3 35 8-42 44-79 (96)
55 1fjc_A Nucleolin RBD2, protein 93.8 0.038 1.3E-06 39.7 2.9 34 9-42 54-88 (96)
56 2cqb_A Peptidyl-prolyl CIS-tra 93.8 0.077 2.6E-06 38.5 4.6 35 8-42 54-89 (102)
57 2dgo_A Cytotoxic granule-assoc 93.8 0.066 2.3E-06 39.8 4.3 36 9-44 58-94 (115)
58 2yh0_A Splicing factor U2AF 65 93.8 0.077 2.6E-06 42.0 4.9 40 8-47 51-90 (198)
59 2ek1_A RNA-binding protein 12; 93.8 0.064 2.2E-06 38.3 4.1 35 8-42 57-92 (95)
60 3lqv_A PRE-mRNA branch site pr 93.7 0.031 1.1E-06 41.6 2.4 37 6-42 45-82 (115)
61 2dnq_A RNA-binding protein 4B; 93.7 0.071 2.4E-06 38.0 4.2 34 10-43 44-78 (90)
62 2g4b_A Splicing factor U2AF 65 93.7 0.068 2.3E-06 41.3 4.4 40 8-47 51-90 (172)
63 2fc9_A NCL protein; structure 93.7 0.1 3.4E-06 37.9 5.0 35 8-42 53-88 (101)
64 2ki2_A SS-DNA binding protein 93.7 0.052 1.8E-06 38.5 3.4 35 8-43 43-78 (90)
65 2do4_A Squamous cell carcinoma 93.7 0.06 2.1E-06 39.0 3.8 34 9-42 59-93 (100)
66 4f25_A Polyadenylate-binding p 93.6 0.038 1.3E-06 41.8 2.7 34 9-42 46-80 (115)
67 1wf1_A RNA-binding protein RAL 93.6 0.036 1.2E-06 41.2 2.5 34 9-42 63-97 (110)
68 2jrs_A RNA-binding protein 39; 93.6 0.052 1.8E-06 40.7 3.4 34 9-42 69-103 (108)
69 2err_A Ataxin-2-binding protei 93.5 0.076 2.6E-06 39.7 4.3 35 8-42 69-104 (109)
70 2j76_E EIF-4B, EIF4B, eukaryot 93.5 0.037 1.3E-06 40.6 2.4 35 8-42 61-95 (100)
71 2cqp_A RNA-binding protein 12; 93.4 0.083 2.8E-06 38.0 4.2 35 8-42 57-92 (98)
72 1p1t_A Cleavage stimulation fa 93.4 0.054 1.9E-06 39.3 3.2 35 8-42 50-85 (104)
73 2cqi_A Nucleolysin TIAR; RNA r 93.4 0.079 2.7E-06 38.6 4.1 35 8-42 55-90 (103)
74 2e5j_A Methenyltetrahydrofolat 93.4 0.041 1.4E-06 39.9 2.5 34 9-42 57-91 (97)
75 1x5u_A Splicing factor 3B subu 93.3 0.055 1.9E-06 39.5 3.1 34 9-42 58-92 (105)
76 1x4b_A Heterogeneous nuclear r 93.3 0.13 4.3E-06 38.4 5.1 34 9-42 70-103 (116)
77 1x4c_A Splicing factor, argini 93.3 0.062 2.1E-06 39.9 3.4 35 9-43 51-91 (108)
78 3ex7_B RNA-binding protein 8A; 93.3 0.045 1.5E-06 41.3 2.7 35 8-42 64-99 (126)
79 1wg5_A Heterogeneous nuclear r 93.2 0.069 2.3E-06 39.5 3.5 34 9-42 58-91 (104)
80 1wg1_A KIAA1579 protein, homol 93.2 0.047 1.6E-06 39.0 2.5 35 9-43 41-76 (88)
81 2lmi_A GRSF-1, G-rich sequence 93.2 0.036 1.2E-06 41.2 2.0 35 8-42 55-89 (107)
82 2do0_A HnRNP M, heterogeneous 93.2 0.085 2.9E-06 39.0 4.0 35 8-42 56-91 (114)
83 3ulh_A THO complex subunit 4; 93.1 0.069 2.4E-06 39.0 3.4 35 8-42 70-105 (107)
84 1x5p_A Negative elongation fac 93.1 0.072 2.5E-06 38.6 3.5 34 9-42 50-84 (97)
85 2cpy_A RNA-binding protein 12; 93.0 0.048 1.6E-06 41.0 2.5 35 8-42 57-91 (114)
86 3md3_A Nuclear and cytoplasmic 93.0 0.14 4.9E-06 38.9 5.2 39 7-45 40-79 (166)
87 2lxi_A RNA-binding protein 10; 93.0 0.11 3.9E-06 37.7 4.4 34 9-42 45-80 (91)
88 2xnq_A Nuclear polyadenylated 92.9 0.075 2.6E-06 39.0 3.4 34 9-42 58-92 (97)
89 2cpj_A Non-POU domain-containi 92.9 0.064 2.2E-06 38.9 3.0 34 9-42 52-86 (99)
90 1oo0_B CG8781-PA, drosophila Y 92.9 0.097 3.3E-06 38.6 3.9 35 8-42 68-103 (110)
91 2kxn_B Transformer-2 protein h 92.8 0.076 2.6E-06 41.3 3.4 34 9-42 89-123 (129)
92 1p27_B RNA-binding protein 8A; 92.8 0.085 2.9E-06 38.5 3.5 35 8-42 65-100 (106)
93 3ns6_A Eukaryotic translation 92.8 0.061 2.1E-06 39.6 2.7 34 9-42 55-90 (100)
94 2cqh_A IGF-II mRNA-binding pro 92.7 0.096 3.3E-06 37.4 3.6 34 9-42 45-80 (93)
95 1why_A Hypothetical protein ri 92.7 0.077 2.6E-06 38.3 3.1 34 9-42 54-90 (97)
96 2jvr_A Nucleolar protein 3; RN 92.7 0.084 2.9E-06 40.7 3.5 35 8-42 67-102 (111)
97 2div_A TRNA selenocysteine ass 92.6 0.081 2.8E-06 38.2 3.1 34 9-42 53-91 (99)
98 2fy1_A RNA-binding motif prote 92.4 0.16 5.5E-06 38.5 4.7 36 8-43 48-84 (116)
99 2khc_A Testis-specific RNP-typ 92.4 0.14 4.8E-06 38.1 4.3 34 8-41 82-116 (118)
100 1nu4_A U1A RNA binding domain; 92.4 0.098 3.3E-06 37.5 3.3 34 9-42 52-86 (97)
101 2hgl_A HNRPF protein, heteroge 92.3 0.077 2.6E-06 42.3 2.9 34 9-42 89-122 (136)
102 1s79_A Lupus LA protein; RRM, 92.3 0.062 2.1E-06 40.5 2.2 35 8-42 52-86 (103)
103 1h2v_Z 20 kDa nuclear CAP bind 92.2 0.086 3E-06 41.4 3.1 36 9-44 82-118 (156)
104 2ytc_A PRE-mRNA-splicing facto 92.2 0.081 2.8E-06 37.0 2.6 33 9-41 49-83 (85)
105 2kvi_A Nuclear polyadenylated 92.2 0.057 2E-06 39.2 1.9 34 9-42 46-80 (96)
106 3s8s_A Histone-lysine N-methyl 92.1 0.11 3.6E-06 39.5 3.3 34 9-42 49-83 (110)
107 2cpx_A Hypothetical protein FL 91.9 0.15 5.2E-06 37.7 3.9 34 9-42 68-102 (115)
108 1u6f_A Tcubp1, RNA-binding pro 91.8 0.12 4E-06 39.7 3.3 36 8-43 84-120 (139)
109 2cph_A RNA binding motif prote 91.7 0.29 1E-05 35.5 5.2 35 8-42 58-94 (107)
110 1fje_B Nucleolin RBD12, protei 91.3 0.14 4.8E-06 39.9 3.3 36 9-44 55-90 (175)
111 2hvz_A Splicing factor, argini 91.3 0.064 2.2E-06 38.9 1.3 36 8-43 37-73 (101)
112 2dnr_A Synaptojanin-1; RRM dom 91.2 0.19 6.5E-06 38.7 3.9 32 11-42 52-83 (91)
113 2kn4_A Immunoglobulin G-bindin 91.1 0.25 8.7E-06 38.5 4.7 34 9-42 113-147 (158)
114 2jvo_A Nucleolar protein 3; nu 91.1 0.14 4.8E-06 38.4 3.0 34 9-42 66-100 (108)
115 3beg_B Splicing factor, argini 91.0 0.13 4.3E-06 38.9 2.7 34 9-42 52-91 (115)
116 2dit_A HIV TAT specific factor 90.9 0.15 5.1E-06 38.2 3.1 35 8-42 64-99 (112)
117 2hgm_A HNRPF protein, heteroge 90.8 0.12 4.2E-06 40.8 2.6 35 8-42 84-118 (126)
118 2lea_A Serine/arginine-rich sp 90.7 0.18 6.3E-06 39.3 3.5 34 9-42 90-124 (135)
119 2la4_A Nuclear and cytoplasmic 90.7 0.097 3.3E-06 38.0 1.7 34 9-42 64-98 (101)
120 2lkz_A RNA-binding protein 5; 90.6 0.31 1.1E-05 36.2 4.5 34 9-42 54-92 (95)
121 2cqd_A RNA-binding region cont 90.5 0.36 1.2E-05 35.8 4.8 35 9-43 60-94 (116)
122 2dgp_A Bruno-like 4, RNA bindi 90.5 0.26 8.9E-06 35.8 4.0 36 8-43 55-94 (106)
123 2cqg_A TDP-43, TAR DNA-binding 90.5 0.56 1.9E-05 33.9 5.7 34 9-43 58-91 (103)
124 1whx_A Hypothetical protein ri 90.3 0.13 4.5E-06 38.6 2.3 34 10-43 48-82 (111)
125 1x4h_A RNA-binding protein 28; 90.3 0.34 1.2E-05 35.4 4.5 35 8-42 57-98 (111)
126 2dhg_A TRNA selenocysteine ass 90.1 0.11 3.8E-06 37.8 1.6 35 8-42 51-87 (104)
127 2dnh_A Bruno-like 5, RNA bindi 90.0 0.25 8.5E-06 35.9 3.5 35 8-42 56-94 (105)
128 2dis_A Unnamed protein product 89.9 0.29 9.9E-06 35.8 3.8 36 8-43 52-90 (109)
129 2hgn_A Heterogeneous nuclear r 89.9 0.065 2.2E-06 43.0 0.3 34 9-42 87-120 (139)
130 2rs2_A Musashi-1, RNA-binding 89.9 0.22 7.7E-06 37.1 3.3 34 9-42 68-101 (109)
131 1rk8_A CG8781-PA, CG8781-PA pr 89.6 0.21 7.2E-06 39.8 3.0 35 8-42 114-149 (165)
132 1fxl_A Paraneoplastic encephal 89.6 0.33 1.1E-05 36.8 4.0 35 9-43 45-80 (167)
133 2a3j_A U1 small nuclear ribonu 89.5 0.23 8E-06 39.0 3.2 34 9-42 73-107 (127)
134 4f02_A Polyadenylate-binding p 89.4 0.2 6.8E-06 41.2 2.8 35 8-42 143-178 (213)
135 2lcw_A RNA-binding protein FUS 89.0 0.069 2.4E-06 39.9 0.0 34 9-42 58-92 (116)
136 1jmt_A Splicing factor U2AF 35 89.3 0.21 7E-06 37.7 2.6 35 8-42 68-103 (104)
137 3egn_A RNA-binding protein 40; 89.3 0.18 6.3E-06 38.9 2.4 35 8-42 92-127 (143)
138 2bz2_A Negative elongation fac 89.3 0.19 6.5E-06 38.7 2.5 34 9-42 74-108 (121)
139 3v4m_A Splicing factor U2AF 65 89.2 0.24 8.2E-06 37.4 2.9 35 8-42 59-94 (105)
140 3pgw_A U1-A; protein-RNA compl 89.2 0.32 1.1E-05 41.0 4.0 35 8-42 52-87 (282)
141 1x4e_A RNA binding motif, sing 89.1 0.076 2.6E-06 37.2 0.1 32 9-40 48-80 (85)
142 1b7f_A Protein (SXL-lethal pro 89.0 0.4 1.4E-05 36.6 4.1 35 9-43 46-81 (168)
143 2dha_A FLJ20171 protein; RRM d 89.0 0.12 4.2E-06 40.4 1.2 35 8-42 68-102 (123)
144 1uaw_A Mouse-musashi-1; RNP-ty 88.9 0.35 1.2E-05 32.9 3.4 34 8-41 42-75 (77)
145 2xs2_A Deleted in azoospermia- 88.2 0.35 1.2E-05 35.0 3.2 34 8-42 50-83 (102)
146 1ufw_A Synaptojanin 2; RNP dom 88.2 0.33 1.1E-05 37.7 3.2 31 11-41 61-91 (95)
147 2pe8_A Splicing factor 45; RRM 88.0 0.36 1.2E-05 36.5 3.2 35 8-42 56-91 (105)
148 3q2s_C Cleavage and polyadenyl 87.6 0.37 1.3E-05 41.1 3.4 34 9-42 113-147 (229)
149 3n9u_C Cleavage and polyadenyl 87.5 0.51 1.7E-05 37.9 4.0 34 9-42 100-134 (156)
150 3pgw_S U1-70K; protein-RNA com 87.4 0.33 1.1E-05 45.5 3.3 35 8-42 144-179 (437)
151 2ghp_A U4/U6 snRNA-associated 87.2 0.52 1.8E-05 40.0 4.1 38 7-44 80-117 (292)
152 1l3k_A Heterogeneous nuclear r 86.6 0.74 2.5E-05 36.1 4.4 36 9-44 56-91 (196)
153 3tyt_A Heterogeneous nuclear r 86.5 0.42 1.4E-05 39.8 3.1 34 9-42 43-77 (205)
154 2qfj_A FBP-interacting repress 86.1 0.57 2E-05 37.4 3.6 36 7-42 69-105 (216)
155 3smz_A Protein raver-1, ribonu 85.1 0.66 2.3E-05 39.1 3.7 35 8-42 226-261 (284)
156 1qm9_A Polypyrimidine tract-bi 84.3 0.47 1.6E-05 37.8 2.2 34 10-43 43-77 (198)
157 2adc_A Polypyrimidine tract-bi 83.7 0.62 2.1E-05 38.6 2.8 34 10-43 74-108 (229)
158 2diu_A KIAA0430 protein; struc 83.6 1.1 3.9E-05 34.7 4.1 34 9-42 47-81 (96)
159 1x5o_A RNA binding motif, sing 83.5 0.76 2.6E-05 33.8 3.0 33 9-41 67-108 (114)
160 3s6e_A RNA-binding protein 39; 83.3 0.64 2.2E-05 36.0 2.6 34 9-42 56-90 (114)
161 3sde_A Paraspeckle component 1 80.6 0.99 3.4E-05 38.2 3.0 35 9-43 59-94 (261)
162 2cq1_A PTB-like protein L; RRM 80.5 1.1 3.8E-05 33.6 3.0 34 9-42 52-88 (101)
163 3ue2_A Poly(U)-binding-splicin 80.0 1 3.5E-05 34.9 2.7 34 9-42 72-106 (118)
164 2e5i_A Heterogeneous nuclear r 79.7 1.3 4.4E-05 34.9 3.2 33 10-42 64-99 (124)
165 3smz_A Protein raver-1, ribonu 79.1 1.6 5.6E-05 36.7 3.9 35 9-43 138-173 (284)
166 1sjq_A Polypyrimidine tract-bi 77.6 0.95 3.3E-05 34.9 1.8 34 9-42 53-89 (105)
167 1x4d_A Matrin 3; structural ge 75.6 2.9 9.8E-05 31.6 4.0 36 10-45 54-92 (102)
168 2ad9_A Polypyrimidine tract-bi 74.6 1.3 4.5E-05 34.7 1.9 34 9-42 68-104 (119)
169 1sjr_A Polypyrimidine tract-bi 74.3 1.8 6.1E-05 36.1 2.7 34 9-42 85-121 (164)
170 2ghp_A U4/U6 snRNA-associated 74.0 2.2 7.5E-05 36.0 3.3 35 8-42 159-194 (292)
171 3r27_A HnRNP L, heterogeneous 73.7 1.5 5.2E-05 33.5 2.0 33 10-42 59-94 (100)
172 1wex_A Hypothetical protein (r 72.5 1.3 4.5E-05 33.3 1.4 34 9-42 52-88 (104)
173 2cq2_A Hypothetical protein LO 72.0 2.2 7.4E-05 33.3 2.6 32 10-41 65-102 (114)
174 2dnl_A Cytoplasmic polyadenyla 69.0 1.9 6.5E-05 32.0 1.6 35 8-42 52-98 (114)
175 1x4f_A Matrin 3; structural ge 68.6 3.3 0.00011 32.0 2.9 35 9-43 63-100 (112)
176 3zzy_A Polypyrimidine tract-bi 68.3 4 0.00014 32.5 3.5 32 10-41 68-102 (130)
177 4f02_A Polyadenylate-binding p 67.8 3.9 0.00013 33.3 3.4 35 8-42 57-92 (213)
178 2m2b_A RNA-binding protein 10; 66.8 1.7 5.9E-05 33.1 0.9 33 9-42 68-105 (131)
179 3nmr_A Cugbp ELAV-like family 65.6 3.6 0.00012 31.3 2.6 35 8-42 47-85 (175)
180 2j8a_A Histone-lysine N-methyl 63.2 6.4 0.00022 32.3 3.8 34 9-42 49-93 (136)
181 2wbr_A GW182, gawky, LD47780P; 61.5 6.2 0.00021 29.9 3.2 34 9-42 44-78 (89)
182 2cjk_A Nuclear polyadenylated 60.0 5.5 0.00019 30.2 2.7 33 9-42 46-78 (167)
183 2d9o_A DNAJ (HSP40) homolog, s 59.5 11 0.00037 28.2 4.3 33 9-42 55-87 (100)
184 3p3d_A Nucleoporin 53; structu 57.6 6.1 0.00021 32.3 2.7 32 11-42 65-96 (132)
185 2dhx_A Poly (ADP-ribose) polym 57.4 9.2 0.00032 30.1 3.6 37 9-45 48-84 (104)
186 1wf0_A TDP-43, TAR DNA-binding 56.8 8.4 0.00029 26.8 3.0 33 9-42 43-75 (88)
187 3d2w_A TAR DNA-binding protein 55.9 7.2 0.00025 27.8 2.6 31 9-42 49-81 (89)
188 2l9w_A U4/U6 snRNA-associated- 46.7 12 0.00041 30.1 2.7 34 8-41 62-96 (117)
189 3sde_A Paraspeckle component 1 45.5 17 0.00057 30.5 3.6 38 8-45 137-179 (261)
190 1wwh_A Nucleoporin 35, nucleop 41.4 20 0.00067 28.6 3.2 35 8-42 59-94 (119)
191 1yo3_A Dynein light chain 1; s 30.5 42 0.0014 25.7 3.4 32 90-121 34-66 (102)
192 1owx_A Lupus LA protein, SS-B, 27.1 55 0.0019 25.7 3.6 33 10-42 57-93 (121)
193 3rjs_A Dynein light chain moto 26.8 55 0.0019 24.2 3.4 33 89-121 20-53 (89)
194 1smz_A Transportan in bicellar 21.9 33 0.0011 20.9 1.1 22 79-100 4-25 (27)
195 4ds1_A Dynein light chain 1, c 20.9 82 0.0028 23.7 3.4 33 89-121 28-61 (97)
No 1
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=95.81 E-value=0.014 Score=43.42 Aligned_cols=43 Identities=16% Similarity=0.254 Sum_probs=35.5
Q ss_pred CCCCCc-eEEEEEEeccchhhHHhh-ccCCeecCc-eEEEecCCCC
Q 025931 3 SDNEWT-QIAYVTFKDMQGAETAVL-LSGATIVDL-SVSISLAPDY 45 (246)
Q Consensus 3 ~~~e~s-qtA~VTFe~~~Aa~TALL-LsGAtL~d~-~V~It~~~~~ 45 (246)
+..+.+ ..|+|+|+++..++.|+- |+|..|.|. .|.|..+.+.
T Consensus 55 ~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 55 EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLFTDF 100 (105)
T ss_dssp CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEECSCCC
T ss_pred CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEEEcchH
Confidence 334443 489999999999999998 899999998 9999876544
No 2
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=95.77 E-value=0.017 Score=40.80 Aligned_cols=35 Identities=17% Similarity=0.315 Sum_probs=32.7
Q ss_pred ceEEEEEEeccchhhHHhhccCCeecCceEEEecC
Q 025931 8 TQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLA 42 (246)
Q Consensus 8 sqtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~ 42 (246)
...|+|+|+++..++.|+.|+|..|.|..|.|..+
T Consensus 48 ~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a 82 (89)
T 3ucg_A 48 KGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPK 82 (89)
T ss_dssp CEEEEEEESSTHHHHHHGGGTTCEETTEECEEEET
T ss_pred ceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEc
Confidence 45899999999999999999999999999999865
No 3
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=95.73 E-value=0.02 Score=42.00 Aligned_cols=35 Identities=26% Similarity=0.475 Sum_probs=32.4
Q ss_pred eEEEEEEeccchhhHHhhccCCeecCceEEEecCC
Q 025931 9 QIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAP 43 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~~ 43 (246)
..|+|+|+++..++.||-|+|..|.|..|.|..+.
T Consensus 57 g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2dng_A 57 GFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIAE 91 (103)
T ss_dssp EEEEEEESSHHHHHHHGGGTTCEETTEECEEEECC
T ss_pred eEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEec
Confidence 48999999999999999999999999999998653
No 4
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.42 E-value=0.014 Score=42.22 Aligned_cols=34 Identities=15% Similarity=0.145 Sum_probs=31.9
Q ss_pred EEEEEEeccchhhHHhhccCCeecCceEEEecCC
Q 025931 10 IAYVTFKDMQGAETAVLLSGATIVDLSVSISLAP 43 (246)
Q Consensus 10 tA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~~ 43 (246)
.|+|+|+++..++.|+-|+|..|.|..|.|..+.
T Consensus 47 ~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 47 FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSC
T ss_pred EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECC
Confidence 8999999999999999999999999999997553
No 5
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=95.37 E-value=0.012 Score=41.45 Aligned_cols=33 Identities=18% Similarity=0.403 Sum_probs=30.8
Q ss_pred ceEEEEEEeccchhhHHhhccCCeecCceEEEe
Q 025931 8 TQIAYVTFKDMQGAETAVLLSGATIVDLSVSIS 40 (246)
Q Consensus 8 sqtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It 40 (246)
...|+|+|+++..++.|+.|+|..|.|..|.|.
T Consensus 53 kg~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~ 85 (87)
T 2hzc_A 53 KNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIR 85 (87)
T ss_dssp SSEEEEEESSHHHHHHHGGGTTCEETTEECEEE
T ss_pred CcEEEEEcCCHHHHHHHHhcCCCEECCeEEEEe
Confidence 357999999999999999999999999999996
No 6
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.36 E-value=0.018 Score=41.52 Aligned_cols=33 Identities=21% Similarity=0.410 Sum_probs=30.7
Q ss_pred EEEEEeccchhhHHhh-ccCCeecCceEEEecCC
Q 025931 11 AYVTFKDMQGAETAVL-LSGATIVDLSVSISLAP 43 (246)
Q Consensus 11 A~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~~ 43 (246)
|+|+|+++..++.|+- |+|..|.|..|.|..+.
T Consensus 57 afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 90 (96)
T 2e44_A 57 VNVTYSSKDQARQALDKLNGFQLENFTLKVAYIP 90 (96)
T ss_dssp EEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred EEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 9999999999999996 99999999999998653
No 7
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=95.25 E-value=0.0081 Score=43.30 Aligned_cols=35 Identities=11% Similarity=0.114 Sum_probs=30.5
Q ss_pred eEEEEEEeccchhhHHh-hccCCeecCceEEEecCC
Q 025931 9 QIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAP 43 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~~ 43 (246)
..|+|+|+++..++.|+ .|+|..|.|..|.|..+.
T Consensus 46 G~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 46 GFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp EEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred cEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 36999999999999999 799999999999998653
No 8
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=95.11 E-value=0.015 Score=39.97 Aligned_cols=34 Identities=18% Similarity=0.130 Sum_probs=31.3
Q ss_pred ceEEEEEEeccchhhHHhhccCCeecCceEEEec
Q 025931 8 TQIAYVTFKDMQGAETAVLLSGATIVDLSVSISL 41 (246)
Q Consensus 8 sqtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~ 41 (246)
...|+|+|+++..++.|+-|+|..|.|..|.|..
T Consensus 41 ~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~ 74 (75)
T 2mss_A 41 RGFGFVTFESEDIVEKVCEIHFHEINNKMVECKK 74 (75)
T ss_dssp CBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEEC
T ss_pred CcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEe
Confidence 3589999999999999999999999999999864
No 9
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.95 E-value=0.019 Score=44.07 Aligned_cols=35 Identities=20% Similarity=0.119 Sum_probs=32.5
Q ss_pred ceEEEEEEeccchhhHHhhccCCeecCceEEEecC
Q 025931 8 TQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLA 42 (246)
Q Consensus 8 sqtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~ 42 (246)
...|||+|+++..++.||.|+|..|+|..|.|..+
T Consensus 56 ~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 56 NGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp CSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEEC
Confidence 45899999999999999999999999999999765
No 10
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.93 E-value=0.041 Score=39.78 Aligned_cols=36 Identities=19% Similarity=0.131 Sum_probs=32.7
Q ss_pred eEEEEEEeccchhhHHh-hccCCeecCceEEEecCCC
Q 025931 9 QIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAPD 44 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~~~ 44 (246)
..|+|+|+++..++.|+ .|+|..|.|..|.|..+..
T Consensus 51 g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 87 (99)
T 1whw_A 51 GFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTI 87 (99)
T ss_dssp SEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCC
T ss_pred eEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 48999999999999999 9999999999999986633
No 11
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.93 E-value=0.034 Score=40.75 Aligned_cols=35 Identities=17% Similarity=0.180 Sum_probs=31.9
Q ss_pred eEEEEEEeccchhhHHhhccCCeecCceEEEecCC
Q 025931 9 QIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAP 43 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~~ 43 (246)
..|||+|+++..++.||-++|..|.|..|.|..+.
T Consensus 59 g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~a~ 93 (105)
T 2dh8_A 59 GFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCT 93 (105)
T ss_dssp EEEEEEESSTTHHHHHHHHCSEEETTEEEBCCCSC
T ss_pred eEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEcc
Confidence 48999999999999999999999999999997653
No 12
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=94.87 E-value=0.018 Score=40.34 Aligned_cols=35 Identities=20% Similarity=0.391 Sum_probs=31.4
Q ss_pred ceEEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931 8 TQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA 42 (246)
Q Consensus 8 sqtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~ 42 (246)
...|+|+|+++..++.|+ .|+|..|.|..|.|..+
T Consensus 49 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 49 RGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred ccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 347999999999999999 89999999999999743
No 13
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.86 E-value=0.019 Score=41.08 Aligned_cols=35 Identities=11% Similarity=0.128 Sum_probs=32.2
Q ss_pred ceEEEEEEeccchhhHHhhccCCeecCceEEEecC
Q 025931 8 TQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLA 42 (246)
Q Consensus 8 sqtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~ 42 (246)
...|+|+|+++..++.||-|+|..|.|..|.|..+
T Consensus 50 ~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 50 TGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFRE 84 (91)
T ss_dssp EEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEE
T ss_pred ceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEEC
Confidence 34899999999999999999999999999999754
No 14
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.84 E-value=0.037 Score=39.55 Aligned_cols=35 Identities=20% Similarity=0.355 Sum_probs=32.2
Q ss_pred eEEEEEEeccchhhHHhh-ccCCeecCceEEEecCC
Q 025931 9 QIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAP 43 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~~ 43 (246)
..|+|+|+++..++.|+- |+|..|.|..|.|..+.
T Consensus 48 g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 48 GYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp SEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred eEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 489999999999999998 99999999999998653
No 15
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.83 E-value=0.032 Score=40.25 Aligned_cols=36 Identities=19% Similarity=0.381 Sum_probs=32.6
Q ss_pred ceEEEEEEeccchhhHHhh-ccCCeecCceEEEecCC
Q 025931 8 TQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAP 43 (246)
Q Consensus 8 sqtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~~ 43 (246)
...|+|+|+++..++.|+- |+|..|.|..|.|..+.
T Consensus 50 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 86 (98)
T 2cpf_A 50 MGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISE 86 (98)
T ss_dssp EEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECSS
T ss_pred ccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcc
Confidence 3589999999999999999 89999999999998653
No 16
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.78 E-value=0.032 Score=40.48 Aligned_cols=36 Identities=25% Similarity=0.348 Sum_probs=32.8
Q ss_pred ceEEEEEEeccchhhHHhhccCCeecCceEEEecCC
Q 025931 8 TQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAP 43 (246)
Q Consensus 8 sqtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~~ 43 (246)
...|+|+|+++..++.||-|+|..|.|..|.|..+.
T Consensus 52 ~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a~ 87 (99)
T 2dgs_A 52 RGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAE 87 (99)
T ss_dssp CSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEECC
T ss_pred CceEEEEECCHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 358999999999999999999999999999998653
No 17
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=94.77 E-value=0.037 Score=39.03 Aligned_cols=33 Identities=12% Similarity=0.164 Sum_probs=30.6
Q ss_pred eEEEEEEeccchhhHHhhccCCeecCceEEEec
Q 025931 9 QIAYVTFKDMQGAETAVLLSGATIVDLSVSISL 41 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~ 41 (246)
..|+|+|+++..++.|+-++|..|.|..|.|..
T Consensus 54 g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 54 GFGFILFKDAASVEKVLDQKEHRLDGRVIDPKK 86 (87)
T ss_dssp EEEEEEESSTHHHHHHHHSSCEEETTEEEEEEE
T ss_pred cEEEEEECCHHHHHHHHHhCCCEECCEEEEEEe
Confidence 479999999999999999999999999999864
No 18
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=94.76 E-value=0.018 Score=39.55 Aligned_cols=34 Identities=12% Similarity=0.149 Sum_probs=31.0
Q ss_pred ceEEEEEEeccchhhHHhhccCCeecCceEEEec
Q 025931 8 TQIAYVTFKDMQGAETAVLLSGATIVDLSVSISL 41 (246)
Q Consensus 8 sqtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~ 41 (246)
...|+|+|+++..++.|+-++|..|.|..|.|..
T Consensus 41 ~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~ 74 (75)
T 1iqt_A 41 RGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKV 74 (75)
T ss_dssp CCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEE
T ss_pred CCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEE
Confidence 3489999999999999999999999999998853
No 19
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.74 E-value=0.037 Score=39.49 Aligned_cols=34 Identities=21% Similarity=0.302 Sum_probs=31.4
Q ss_pred eEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931 9 QIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA 42 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~ 42 (246)
..|+|+|+++..++.|+- |+|..|.|..|.|..+
T Consensus 58 g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 58 GFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP 92 (95)
T ss_dssp EEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred cEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 489999999999999998 8999999999999754
No 20
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.70 E-value=0.025 Score=41.53 Aligned_cols=34 Identities=18% Similarity=0.399 Sum_probs=31.9
Q ss_pred eEEEEEEeccchhhHHhhccCCeecCceEEEecC
Q 025931 9 QIAYVTFKDMQGAETAVLLSGATIVDLSVSISLA 42 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~ 42 (246)
..|+|+|+++..++-||.|+|..|.|..|.|..+
T Consensus 58 g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 91 (104)
T 1wi8_A 58 GFGYAEFEDLDSLLSALSLNEESLGNKRIRVDVA 91 (104)
T ss_dssp SCEEEEESSHHHHHHHHGGGTCEETTEECEEEEC
T ss_pred eEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEEc
Confidence 4799999999999999999999999999999865
No 21
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.69 E-value=0.026 Score=41.77 Aligned_cols=35 Identities=26% Similarity=0.357 Sum_probs=32.3
Q ss_pred ceEEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931 8 TQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA 42 (246)
Q Consensus 8 sqtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~ 42 (246)
...|+|+|+++..++.|+ .|+|..|.|..|.|..+
T Consensus 61 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 61 PPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp SCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 458999999999999999 99999999999999755
No 22
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.59 E-value=0.026 Score=41.08 Aligned_cols=34 Identities=21% Similarity=0.479 Sum_probs=31.6
Q ss_pred eEEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931 9 QIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA 42 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~ 42 (246)
..|+|+|+++..++.|+ .|+|..|.|..|.|..+
T Consensus 55 g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 55 GFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp SEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred cEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 48999999999999999 89999999999999754
No 23
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=94.59 E-value=0.018 Score=40.41 Aligned_cols=35 Identities=26% Similarity=0.407 Sum_probs=32.0
Q ss_pred ceEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931 8 TQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA 42 (246)
Q Consensus 8 sqtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~ 42 (246)
...|+|+|+++..++.|+- |+|..|.|..|.|..+
T Consensus 47 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 47 KGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 4589999999999999998 8999999999999854
No 24
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.59 E-value=0.015 Score=44.39 Aligned_cols=35 Identities=11% Similarity=0.133 Sum_probs=32.1
Q ss_pred ceEEEEEEeccchhhHHhhccCCeecCceEEEecC
Q 025931 8 TQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLA 42 (246)
Q Consensus 8 sqtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~ 42 (246)
...|||+|+++..++.||-|+|..|.|..|.|..+
T Consensus 67 ~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 67 TGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPI 101 (124)
T ss_dssp EEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEE
T ss_pred CeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEEC
Confidence 35799999999999999999999999999999754
No 25
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=94.59 E-value=0.033 Score=39.13 Aligned_cols=35 Identities=20% Similarity=0.285 Sum_probs=31.6
Q ss_pred ceEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931 8 TQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA 42 (246)
Q Consensus 8 sqtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~ 42 (246)
...|+|+|+++..++.|+- |+|..|.|..|.|..+
T Consensus 48 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 48 KGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred ceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 3489999999999999998 8999999999999744
No 26
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=94.59 E-value=0.015 Score=40.88 Aligned_cols=37 Identities=14% Similarity=0.183 Sum_probs=30.9
Q ss_pred CCCCCc-eEEEEEEeccchhhHHhh-ccCCeecCc-eEEE
Q 025931 3 SDNEWT-QIAYVTFKDMQGAETAVL-LSGATIVDL-SVSI 39 (246)
Q Consensus 3 ~~~e~s-qtA~VTFe~~~Aa~TALL-LsGAtL~d~-~V~I 39 (246)
+..+.+ ..|+|+|+++..++.|+- |||..|.|. .|.|
T Consensus 41 ~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 41 EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 334443 589999999999999998 999999999 7766
No 27
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.57 E-value=0.028 Score=41.92 Aligned_cols=33 Identities=27% Similarity=0.510 Sum_probs=31.0
Q ss_pred eEEEEEEeccchhhHHhhccCCeecCceEEEec
Q 025931 9 QIAYVTFKDMQGAETAVLLSGATIVDLSVSISL 41 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~ 41 (246)
..|+|+|+++..++.||.|+|..|.|..|.|..
T Consensus 68 g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 68 GIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQA 100 (114)
T ss_dssp CCEEEEESCGGGHHHHHHHTTEEETTEEEEEEE
T ss_pred cEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEe
Confidence 489999999999999999999999999999974
No 28
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.51 E-value=0.045 Score=39.90 Aligned_cols=36 Identities=25% Similarity=0.413 Sum_probs=32.6
Q ss_pred ceEEEEEEeccchhhHHhh-ccCCeecCceEEEecCC
Q 025931 8 TQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAP 43 (246)
Q Consensus 8 sqtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~~ 43 (246)
...|+|+|+++..++.||- |+|..|.|..|.|..+.
T Consensus 55 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2dnm_A 55 RGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVAR 91 (103)
T ss_dssp CSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECS
T ss_pred CeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECC
Confidence 3479999999999999998 99999999999998653
No 29
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=94.50 E-value=0.021 Score=40.65 Aligned_cols=36 Identities=17% Similarity=0.273 Sum_probs=32.3
Q ss_pred ceEEEEEEeccchhhHHhh-ccCCeecCceEEEecCC
Q 025931 8 TQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAP 43 (246)
Q Consensus 8 sqtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~~ 43 (246)
...|+|+|+++..++.|+- |+|..|.|..|.|..+.
T Consensus 48 ~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 48 KGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 3579999999999999998 99999999999997653
No 30
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=94.48 E-value=0.036 Score=41.17 Aligned_cols=34 Identities=24% Similarity=0.435 Sum_probs=30.8
Q ss_pred eEEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931 9 QIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA 42 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~ 42 (246)
..|+|+|+++..|+.|+ -|+|..|.|..|.|..+
T Consensus 62 G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 62 GYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp EEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred ccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 37999999999999999 59999999999999744
No 31
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.47 E-value=0.027 Score=40.26 Aligned_cols=33 Identities=15% Similarity=0.362 Sum_probs=30.6
Q ss_pred eEEEEEEeccchhhHHh-hccCCeecCceEEEec
Q 025931 9 QIAYVTFKDMQGAETAV-LLSGATIVDLSVSISL 41 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~ 41 (246)
..|+|+|+++..++.|+ .|+|..|.|..|.|.-
T Consensus 59 g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 59 GVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp TCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred cEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 47999999999999999 7999999999999964
No 32
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.37 E-value=0.063 Score=39.13 Aligned_cols=35 Identities=23% Similarity=0.381 Sum_probs=32.1
Q ss_pred ceEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931 8 TQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA 42 (246)
Q Consensus 8 sqtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~ 42 (246)
...|+|+|+++..++.||- |+|..|.|..|.|..+
T Consensus 55 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 90 (103)
T 2cq3_A 55 KGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 90 (103)
T ss_dssp CCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred cEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 4589999999999999996 8999999999999865
No 33
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.36 E-value=0.041 Score=40.09 Aligned_cols=34 Identities=32% Similarity=0.253 Sum_probs=31.6
Q ss_pred eEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931 9 QIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA 42 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~ 42 (246)
..|+|+|+++..++.|+- |+|..|.|..|.|..+
T Consensus 53 g~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a 87 (96)
T 2dgx_A 53 LKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLA 87 (96)
T ss_dssp CCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred eEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 369999999999999998 9999999999999865
No 34
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.35 E-value=0.041 Score=39.96 Aligned_cols=34 Identities=21% Similarity=0.305 Sum_probs=31.6
Q ss_pred eEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931 9 QIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA 42 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~ 42 (246)
..|+|+|+++..++.||- |+|..|.|..|.|..+
T Consensus 55 g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 55 GFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89 (102)
T ss_dssp EEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred cEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 489999999999999997 9999999999999855
No 35
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.31 E-value=0.071 Score=38.12 Aligned_cols=35 Identities=17% Similarity=0.481 Sum_probs=32.3
Q ss_pred ceEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931 8 TQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA 42 (246)
Q Consensus 8 sqtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~ 42 (246)
...|+|+|+++..++.|+- |+|..|.|..|.|..+
T Consensus 48 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 48 KGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 3489999999999999998 9999999999999865
No 36
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=94.29 E-value=0.053 Score=38.76 Aligned_cols=35 Identities=20% Similarity=0.368 Sum_probs=31.9
Q ss_pred ceEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931 8 TQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA 42 (246)
Q Consensus 8 sqtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~ 42 (246)
...|+|+|+++..++.|+- |+|..|.|..|.|..+
T Consensus 57 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 57 KSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp EEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 3589999999999999998 9999999999999754
No 37
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=94.26 E-value=0.037 Score=40.24 Aligned_cols=34 Identities=21% Similarity=0.431 Sum_probs=31.8
Q ss_pred eEEEEEEeccchhhHHhhccCCeecCceEEEecC
Q 025931 9 QIAYVTFKDMQGAETAVLLSGATIVDLSVSISLA 42 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~ 42 (246)
..|+|+|+++..++.||-|+|..|.|..|.|..+
T Consensus 59 g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 59 KFGYVDFESAEDLEKALELTGLKVFGNEIKLEKP 92 (101)
T ss_dssp TEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECC
T ss_pred cEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEc
Confidence 4799999999999999999999999999999755
No 38
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=94.23 E-value=0.035 Score=40.37 Aligned_cols=34 Identities=26% Similarity=0.390 Sum_probs=30.8
Q ss_pred eEEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931 9 QIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA 42 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~ 42 (246)
..|+|+|+++..++.|+ .|+|..|.|..|.|..+
T Consensus 64 G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~A 98 (99)
T 2la6_A 64 GEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFA 98 (99)
T ss_dssp EEEEEEBSSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred eEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEec
Confidence 48999999999999999 59999999999999643
No 39
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=94.18 E-value=0.033 Score=42.49 Aligned_cols=35 Identities=9% Similarity=0.101 Sum_probs=32.0
Q ss_pred ceEEEEEEeccchhhHHhhccCCeecCceEEEecC
Q 025931 8 TQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLA 42 (246)
Q Consensus 8 sqtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~ 42 (246)
...|||+|+++..++.||-|+|..|.|..|.|..+
T Consensus 61 ~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a 95 (118)
T 2db1_A 61 SGEAFVELESEDDVKLALKKDRESMGHRYIEVFKS 95 (118)
T ss_dssp EEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEEEE
T ss_pred CeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEEC
Confidence 34899999999999999999999999999999754
No 40
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=94.17 E-value=0.05 Score=37.83 Aligned_cols=35 Identities=20% Similarity=0.357 Sum_probs=32.0
Q ss_pred ceEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931 8 TQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA 42 (246)
Q Consensus 8 sqtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~ 42 (246)
...|+|+|+++..++.|+- |+|..|.|..|.|..+
T Consensus 43 ~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 78 (83)
T 3md1_A 43 RGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 78 (83)
T ss_dssp EEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred cceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEec
Confidence 4579999999999999998 8999999999999755
No 41
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.16 E-value=0.051 Score=40.69 Aligned_cols=34 Identities=24% Similarity=0.306 Sum_probs=31.4
Q ss_pred eEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931 9 QIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA 42 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~ 42 (246)
..|+|+|+++..++.|+- |+|..|.|..|.|..+
T Consensus 64 G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a 98 (111)
T 2cpi_A 64 ASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLG 98 (111)
T ss_dssp EEEEEEESSHHHHHHHHHHHTTEEETTEEEEEESC
T ss_pred eEEEEEECcHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 489999999999999998 7999999999999754
No 42
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.15 E-value=0.059 Score=38.44 Aligned_cols=34 Identities=21% Similarity=0.416 Sum_probs=31.4
Q ss_pred EEEEEEeccchhhHHhh-ccCCeecCceEEEecCC
Q 025931 10 IAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAP 43 (246)
Q Consensus 10 tA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~~ 43 (246)
.|+|+|+++..++.|+- |+|..|.|..|.|..+.
T Consensus 45 ~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 79 (90)
T 2dnp_A 45 YAFVHMEKEADAKAAIAQLNGKEVKGKRINVELST 79 (90)
T ss_dssp CEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECC
Confidence 69999999999999997 99999999999998653
No 43
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.14 E-value=0.056 Score=39.42 Aligned_cols=34 Identities=24% Similarity=0.392 Sum_probs=31.6
Q ss_pred eEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931 9 QIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA 42 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~ 42 (246)
..|+|+|+++..++.|+- |+|..|.|..|.|..+
T Consensus 58 g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (103)
T 2cq0_A 58 GFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 92 (103)
T ss_dssp EEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred eEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEC
Confidence 479999999999999998 9999999999999755
No 44
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.13 E-value=0.073 Score=39.43 Aligned_cols=35 Identities=29% Similarity=0.326 Sum_probs=32.0
Q ss_pred eEEEEEEeccchhhHHhh-ccCCeecCceEEEecCC
Q 025931 9 QIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAP 43 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~~ 43 (246)
..|+|+|+++..++.||- |+|..|.|..|.|..+.
T Consensus 66 g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 101 (113)
T 2cpe_A 66 GDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLAR 101 (113)
T ss_dssp SEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECSS
T ss_pred eEEEEEECCHHHHHHHHHHcCCCccCCCEEEEEECC
Confidence 489999999999999996 89999999999998653
No 45
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.06 E-value=0.065 Score=38.89 Aligned_cols=33 Identities=27% Similarity=0.459 Sum_probs=31.2
Q ss_pred EEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931 10 IAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA 42 (246)
Q Consensus 10 tA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~ 42 (246)
.|+|+|+++..++.|+- |+|..|.|..|.|..+
T Consensus 53 ~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpd_A 53 YAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLA 86 (99)
T ss_dssp EEEEEESSHHHHHHHHHHHSSEEETTEEEEEECC
T ss_pred eEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 79999999999999998 9999999999999855
No 46
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.05 E-value=0.025 Score=42.28 Aligned_cols=34 Identities=24% Similarity=0.149 Sum_probs=31.5
Q ss_pred eEEEEEEeccchhhHHhhccCCeecCceEEEecC
Q 025931 9 QIAYVTFKDMQGAETAVLLSGATIVDLSVSISLA 42 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~ 42 (246)
-.|||+|+++..++.||-|++..|.+..|.|..+
T Consensus 56 G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 56 GEADVEFATHEDAVAAMAKDKANMQHRYVELFLN 89 (102)
T ss_dssp EEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEE
T ss_pred eEEEEEECCHHHHHHHHHhCCCeECCcEEEEEEC
Confidence 3799999999999999999999999999999754
No 47
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=94.04 E-value=0.058 Score=40.60 Aligned_cols=36 Identities=14% Similarity=0.283 Sum_probs=32.9
Q ss_pred ceEEEEEEeccchhhHHhhccCCeecCceEEEecCC
Q 025931 8 TQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAP 43 (246)
Q Consensus 8 sqtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~~ 43 (246)
...|+|+|+++..++.||-|+|..|.|..|.|..+.
T Consensus 78 ~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 78 KGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp EEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESS
T ss_pred ccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 458999999999999999999999999999998653
No 48
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.99 E-value=0.064 Score=38.40 Aligned_cols=33 Identities=18% Similarity=0.279 Sum_probs=30.9
Q ss_pred EEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931 10 IAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA 42 (246)
Q Consensus 10 tA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~ 42 (246)
.|+|+|+++..++.|+ .|+|..|.|..|.|..+
T Consensus 46 ~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 46 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp EEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred EEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 7999999999999999 69999999999999865
No 49
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.98 E-value=0.062 Score=39.76 Aligned_cols=34 Identities=24% Similarity=0.326 Sum_probs=31.5
Q ss_pred eEEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931 9 QIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA 42 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~ 42 (246)
..|+|+|+++..++.|+ .|+|..|.|..|.|..+
T Consensus 62 g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 62 GYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp TEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 47999999999999999 89999999999999855
No 50
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=93.96 E-value=0.059 Score=40.79 Aligned_cols=36 Identities=22% Similarity=0.218 Sum_probs=32.5
Q ss_pred ceEEEEEEeccchhhHHhh-ccCCeecCceEEEecCC
Q 025931 8 TQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAP 43 (246)
Q Consensus 8 sqtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~~ 43 (246)
...|+|+|++...++.|+- |+|..|.|..|.|..+.
T Consensus 76 ~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 76 LGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp CSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred eeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 3589999999999999998 99999999999998543
No 51
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=93.91 E-value=0.043 Score=40.24 Aligned_cols=34 Identities=24% Similarity=0.457 Sum_probs=31.5
Q ss_pred EEEEEEeccchhhHHhh-ccCCeecCceEEEecCC
Q 025931 10 IAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAP 43 (246)
Q Consensus 10 tA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~~ 43 (246)
.|+|+|+++..++.|+- |+|..|.|..|.|..+.
T Consensus 47 ~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 81 (103)
T 2dgu_A 47 YAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAK 81 (103)
T ss_dssp CEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred EEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcC
Confidence 69999999999999998 89999999999998653
No 52
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=93.89 E-value=0.058 Score=40.19 Aligned_cols=34 Identities=18% Similarity=0.332 Sum_probs=31.6
Q ss_pred eEEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931 9 QIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA 42 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~ 42 (246)
..|+|+|+++..++.|| .|+|..|.|..|.|..+
T Consensus 68 g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 68 CFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp EEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred ccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 47999999999999999 89999999999999855
No 53
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.84 E-value=0.077 Score=38.66 Aligned_cols=36 Identities=22% Similarity=0.395 Sum_probs=32.5
Q ss_pred ceEEEEEEeccchhhHHhh-ccCCeecCceEEEecCC
Q 025931 8 TQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAP 43 (246)
Q Consensus 8 sqtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~~ 43 (246)
...|+|+|+++..++.|+- |+|..|.|..|.|..+.
T Consensus 55 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 55 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred CEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 3589999999999999998 99999999999998653
No 54
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=93.83 E-value=0.066 Score=38.62 Aligned_cols=35 Identities=20% Similarity=0.384 Sum_probs=32.1
Q ss_pred ceEEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931 8 TQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA 42 (246)
Q Consensus 8 sqtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~ 42 (246)
...|+|+|+++..++.|+ .|+|..|.|..|.|..+
T Consensus 44 ~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 79 (96)
T 2x1f_A 44 KGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYS 79 (96)
T ss_dssp CSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEc
Confidence 458999999999999999 79999999999999755
No 55
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=93.81 E-value=0.038 Score=39.68 Aligned_cols=34 Identities=38% Similarity=0.441 Sum_probs=31.7
Q ss_pred eEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931 9 QIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA 42 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~ 42 (246)
..|+|+|+++..++.|+- |+|..|.|..|.|..+
T Consensus 54 g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 54 GIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp EEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred eEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 479999999999999998 9999999999999765
No 56
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.81 E-value=0.077 Score=38.47 Aligned_cols=35 Identities=20% Similarity=0.391 Sum_probs=31.9
Q ss_pred ceEEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931 8 TQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA 42 (246)
Q Consensus 8 sqtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~ 42 (246)
...|+|+|+++..++.|+ .|+|..|.|..|.|..+
T Consensus 54 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 54 RGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp SSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 458999999999999999 69999999999999755
No 57
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=93.80 E-value=0.066 Score=39.78 Aligned_cols=36 Identities=19% Similarity=0.275 Sum_probs=32.4
Q ss_pred eEEEEEEeccchhhHHh-hccCCeecCceEEEecCCC
Q 025931 9 QIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAPD 44 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~~~ 44 (246)
..|+|+|+++..++.|| .|+|..|.|..|.|..+..
T Consensus 58 g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 94 (115)
T 2dgo_A 58 GYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 94 (115)
T ss_dssp EEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSC
T ss_pred eEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccC
Confidence 48999999999999999 4999999999999986643
No 58
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=93.79 E-value=0.077 Score=41.96 Aligned_cols=40 Identities=23% Similarity=0.415 Sum_probs=35.3
Q ss_pred ceEEEEEEeccchhhHHhhccCCeecCceEEEecCCCCCC
Q 025931 8 TQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAPDYQL 47 (246)
Q Consensus 8 sqtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~~~~~~ 47 (246)
...|+|+|.++..++.||-|+|..|.|..|.|..+..+..
T Consensus 51 ~g~afV~F~~~~~A~~Al~l~g~~~~g~~i~v~~~~~~~~ 90 (198)
T 2yh0_A 51 KNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQP 90 (198)
T ss_dssp TTEEEEEESCSHHHHHHGGGTTEEETTEEEEEECCCCCCC
T ss_pred CCEEEEEeCCHHHHHHHHHhcCCEEcCceEEEeCCCCCCC
Confidence 3579999999999999999999999999999987665543
No 59
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=93.76 E-value=0.064 Score=38.29 Aligned_cols=35 Identities=31% Similarity=0.302 Sum_probs=31.7
Q ss_pred ceEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931 8 TQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA 42 (246)
Q Consensus 8 sqtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~ 42 (246)
...|+|+|+++..++.|+- |+|..|.|..|.|..+
T Consensus 57 ~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 57 TGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred eeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 3579999999999999997 9999999999999754
No 60
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=93.74 E-value=0.031 Score=41.59 Aligned_cols=37 Identities=30% Similarity=0.358 Sum_probs=32.8
Q ss_pred CCceEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931 6 EWTQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA 42 (246)
Q Consensus 6 e~sqtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~ 42 (246)
.....|+|+|.++..++.|+- |+|..|.|..|.|..+
T Consensus 45 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 45 ETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 334589999999999999998 9999999999999754
No 61
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.72 E-value=0.071 Score=38.00 Aligned_cols=34 Identities=18% Similarity=0.325 Sum_probs=31.3
Q ss_pred EEEEEEeccchhhHHh-hccCCeecCceEEEecCC
Q 025931 10 IAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAP 43 (246)
Q Consensus 10 tA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~~ 43 (246)
.|+|+|+++..++.|+ .|+|..|.|..|.|..+.
T Consensus 44 ~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 78 (90)
T 2dnq_A 44 YGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASK 78 (90)
T ss_dssp EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSS
T ss_pred EEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECC
Confidence 6999999999999999 699999999999998653
No 62
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=93.69 E-value=0.068 Score=41.32 Aligned_cols=40 Identities=23% Similarity=0.415 Sum_probs=35.1
Q ss_pred ceEEEEEEeccchhhHHhhccCCeecCceEEEecCCCCCC
Q 025931 8 TQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAPDYQL 47 (246)
Q Consensus 8 sqtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~~~~~~ 47 (246)
...|+|+|.++..++.|+-|+|..|.|..|.|.....+..
T Consensus 51 ~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~~~~~~ 90 (172)
T 2g4b_A 51 KNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQP 90 (172)
T ss_dssp TTEEEEEESSHHHHHHHGGGTTCEETTEECEEECCSSCCC
T ss_pred CCEEEEEeCCHHHHHHHHHhCCcEecCceeeecCCcccCC
Confidence 3579999999999999999999999999999987655543
No 63
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.68 E-value=0.1 Score=37.90 Aligned_cols=35 Identities=17% Similarity=0.311 Sum_probs=32.2
Q ss_pred ceEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931 8 TQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA 42 (246)
Q Consensus 8 sqtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~ 42 (246)
...|+|+|+++..++.||- |+|..|.|..|.|..+
T Consensus 53 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 53 KGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp CSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred eeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 3589999999999999998 9999999999999865
No 64
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=93.67 E-value=0.052 Score=38.50 Aligned_cols=35 Identities=11% Similarity=0.299 Sum_probs=29.8
Q ss_pred ceEEEEEEeccchhhHHhh-ccCCeecCceEEEecCC
Q 025931 8 TQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAP 43 (246)
Q Consensus 8 sqtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~~ 43 (246)
...|+|+|+++. ++.|+. |+|..|.|..|.|..+.
T Consensus 43 ~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~ 78 (90)
T 2ki2_A 43 KGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEAN 78 (90)
T ss_dssp CEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC-
T ss_pred ceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcC
Confidence 458999999999 777776 89999999999998653
No 65
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.66 E-value=0.06 Score=39.03 Aligned_cols=34 Identities=26% Similarity=0.496 Sum_probs=31.5
Q ss_pred eEEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931 9 QIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA 42 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~ 42 (246)
..|+|+|+++..++.|+ .|+|..|.|..|.|..+
T Consensus 59 g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 59 GLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp EEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred eEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 57999999999999999 89999999999999754
No 66
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=93.63 E-value=0.038 Score=41.77 Aligned_cols=34 Identities=24% Similarity=0.361 Sum_probs=31.2
Q ss_pred eEEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931 9 QIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA 42 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~ 42 (246)
..|+|+|+++..++.|| -|+|..|.|..|.|..+
T Consensus 46 g~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a 80 (115)
T 4f25_A 46 GYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 80 (115)
T ss_dssp EEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred ceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 47999999999999999 59999999999999865
No 67
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=93.58 E-value=0.036 Score=41.17 Aligned_cols=34 Identities=24% Similarity=0.383 Sum_probs=31.6
Q ss_pred eEEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931 9 QIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA 42 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~ 42 (246)
..|+|+|+++..++.|+ .|+|..|.|..|.|..+
T Consensus 63 g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 63 GYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp TEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 47999999999999999 89999999999999865
No 68
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=93.57 E-value=0.052 Score=40.72 Aligned_cols=34 Identities=21% Similarity=0.390 Sum_probs=31.3
Q ss_pred eEEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931 9 QIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA 42 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~ 42 (246)
..|+|+|+++..++.|+ .|+|..|.|..|.|..+
T Consensus 69 g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 103 (108)
T 2jrs_A 69 GYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV 103 (108)
T ss_dssp EEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECS
T ss_pred eEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 48999999999999999 59999999999999754
No 69
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.54 E-value=0.076 Score=39.70 Aligned_cols=35 Identities=23% Similarity=0.381 Sum_probs=32.0
Q ss_pred ceEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931 8 TQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA 42 (246)
Q Consensus 8 sqtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~ 42 (246)
...|+|+|+++..++.|+- |+|..|.|..|.|..+
T Consensus 69 kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 104 (109)
T 2err_A 69 KGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 104 (109)
T ss_dssp TTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred ceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 4589999999999999998 8999999999999755
No 70
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=93.51 E-value=0.037 Score=40.63 Aligned_cols=35 Identities=17% Similarity=0.388 Sum_probs=32.0
Q ss_pred ceEEEEEEeccchhhHHhhccCCeecCceEEEecC
Q 025931 8 TQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLA 42 (246)
Q Consensus 8 sqtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~ 42 (246)
...|+|+|++...++.||-|+|..|.|..|.|..+
T Consensus 61 ~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~~a 95 (100)
T 2j76_E 61 KGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDVA 95 (100)
T ss_dssp CSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCEEC
T ss_pred CeEEEEEECCHHHHHHHHhcCCCEECCeEEEEEec
Confidence 34899999999999999999999999999999754
No 71
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.45 E-value=0.083 Score=38.03 Aligned_cols=35 Identities=31% Similarity=0.289 Sum_probs=32.0
Q ss_pred ceEEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931 8 TQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA 42 (246)
Q Consensus 8 sqtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~ 42 (246)
...|+|+|+++..++.|+ -|+|..|.|..|.|..+
T Consensus 57 ~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 57 TGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp EEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred eeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 357999999999999999 89999999999999754
No 72
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.42 E-value=0.054 Score=39.32 Aligned_cols=35 Identities=17% Similarity=0.300 Sum_probs=31.8
Q ss_pred ceEEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931 8 TQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA 42 (246)
Q Consensus 8 sqtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~ 42 (246)
...|+|+|+++..++.|+ .|+|..|.|..|.|..+
T Consensus 50 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 50 KGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp EEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 358999999999999999 59999999999999754
No 73
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.39 E-value=0.079 Score=38.57 Aligned_cols=35 Identities=23% Similarity=0.429 Sum_probs=32.2
Q ss_pred ceEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931 8 TQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA 42 (246)
Q Consensus 8 sqtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~ 42 (246)
...|+|+|+++..++.||- |+|..|.|..|.|..+
T Consensus 55 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2cqi_A 55 DPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 90 (103)
T ss_dssp CCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEEC
Confidence 3589999999999999998 9999999999999865
No 74
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.37 E-value=0.041 Score=39.94 Aligned_cols=34 Identities=26% Similarity=0.425 Sum_probs=31.3
Q ss_pred eEEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931 9 QIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA 42 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~ 42 (246)
..|+|+|+++..++.|+ .|+|..|.|..|.|..+
T Consensus 57 g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 57 RRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp TEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred cEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 47999999999999999 88999999999999754
No 75
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.30 E-value=0.055 Score=39.46 Aligned_cols=34 Identities=15% Similarity=0.251 Sum_probs=31.6
Q ss_pred eEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931 9 QIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA 42 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~ 42 (246)
..|+|+|+++..++.|+- |+|..|.|..|.|..+
T Consensus 58 g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 58 GYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp SCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred cEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 379999999999999998 8999999999999855
No 76
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.28 E-value=0.13 Score=38.38 Aligned_cols=34 Identities=24% Similarity=0.253 Sum_probs=31.8
Q ss_pred eEEEEEEeccchhhHHhhccCCeecCceEEEecC
Q 025931 9 QIAYVTFKDMQGAETAVLLSGATIVDLSVSISLA 42 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~ 42 (246)
..|+|+|+++..++.||-++|..|.|..|.|..+
T Consensus 70 g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 70 GFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRA 103 (116)
T ss_dssp SEEEEECSSHHHHHHHHTSCSEEETTEEEEEECC
T ss_pred ceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEEC
Confidence 4899999999999999999999999999999865
No 77
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.27 E-value=0.062 Score=39.92 Aligned_cols=35 Identities=14% Similarity=0.149 Sum_probs=31.8
Q ss_pred eEEEEEEeccchhhHHhh-ccCCeecC-----ceEEEecCC
Q 025931 9 QIAYVTFKDMQGAETAVL-LSGATIVD-----LSVSISLAP 43 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TALL-LsGAtL~d-----~~V~It~~~ 43 (246)
..|+|+|+++..++.||- |||..|.| ..|.|..+.
T Consensus 51 g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~ 91 (108)
T 1x4c_A 51 GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 91 (108)
T ss_dssp TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESS
T ss_pred CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCC
Confidence 479999999999999998 99999999 999998653
No 78
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=93.27 E-value=0.045 Score=41.34 Aligned_cols=35 Identities=17% Similarity=0.351 Sum_probs=31.8
Q ss_pred ceEEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931 8 TQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA 42 (246)
Q Consensus 8 sqtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~ 42 (246)
...|+|+|+++..++.|| .|+|..|.|..|.|..+
T Consensus 64 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 64 KGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp CSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 348999999999999999 59999999999999754
No 79
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.21 E-value=0.069 Score=39.50 Aligned_cols=34 Identities=24% Similarity=0.155 Sum_probs=31.6
Q ss_pred eEEEEEEeccchhhHHhhccCCeecCceEEEecC
Q 025931 9 QIAYVTFKDMQGAETAVLLSGATIVDLSVSISLA 42 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~ 42 (246)
..|+|+|+++..++.||-++|..|++..|.|..+
T Consensus 58 G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 58 GEAFVQFASQEIAEKALKKHKERIGHRYIEIFKS 91 (104)
T ss_dssp SEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEE
T ss_pred eEEEEEECCHHHHHHHHHhCcchhCCcEEEEEEC
Confidence 4799999999999999999999999999999754
No 80
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=93.20 E-value=0.047 Score=39.04 Aligned_cols=35 Identities=20% Similarity=0.329 Sum_probs=32.0
Q ss_pred eEEEEEEeccchhhHHhh-ccCCeecCceEEEecCC
Q 025931 9 QIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAP 43 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~~ 43 (246)
..|+|+|+++..++.|+- |+|..|.|..|.|..++
T Consensus 41 g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 41 RTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp TEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred cEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 479999999999999998 99999999999998653
No 81
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=93.18 E-value=0.036 Score=41.23 Aligned_cols=35 Identities=11% Similarity=-0.006 Sum_probs=32.0
Q ss_pred ceEEEEEEeccchhhHHhhccCCeecCceEEEecC
Q 025931 8 TQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLA 42 (246)
Q Consensus 8 sqtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~ 42 (246)
...|||+|+++..++.||-|+|..|+|..|.|..+
T Consensus 55 ~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a 89 (107)
T 2lmi_A 55 RGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEI 89 (107)
T ss_dssp CSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCCEEC
T ss_pred eeEEEEEECCHHHHHHHHHhCcceeCCeEEEEEEC
Confidence 34899999999999999999999999999999754
No 82
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.17 E-value=0.085 Score=39.00 Aligned_cols=35 Identities=23% Similarity=0.355 Sum_probs=32.0
Q ss_pred ceEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931 8 TQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA 42 (246)
Q Consensus 8 sqtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~ 42 (246)
...|+|+|+++..++.|+. |+|..|.|..|.|..+
T Consensus 56 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 56 RGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred eeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 3589999999999999998 9999999999999854
No 83
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=93.14 E-value=0.069 Score=39.05 Aligned_cols=35 Identities=23% Similarity=0.235 Sum_probs=31.6
Q ss_pred ceEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931 8 TQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA 42 (246)
Q Consensus 8 sqtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~ 42 (246)
...|+|+|+++..++.|+- |+|..|.|..|.|..+
T Consensus 70 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 70 LGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 3489999999999999999 8999999999999754
No 84
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.12 E-value=0.072 Score=38.59 Aligned_cols=34 Identities=29% Similarity=0.601 Sum_probs=31.3
Q ss_pred eEEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931 9 QIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA 42 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~ 42 (246)
..|+|+|+++..++.|+ .|+|..|.|..|.|..+
T Consensus 50 g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 50 NCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp TEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 37999999999999999 89999999999999754
No 85
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.04 E-value=0.048 Score=41.00 Aligned_cols=35 Identities=17% Similarity=0.156 Sum_probs=31.9
Q ss_pred ceEEEEEEeccchhhHHhhccCCeecCceEEEecC
Q 025931 8 TQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLA 42 (246)
Q Consensus 8 sqtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~ 42 (246)
...|||+|+++..++.||-++|..|.|..|.|..+
T Consensus 57 ~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 57 LGQALVQFKNEDDARKSERLHRKKLNGREAFVHVV 91 (114)
T ss_dssp SSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEEE
T ss_pred ceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEEC
Confidence 34799999999999999999999999999999754
No 86
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=93.00 E-value=0.14 Score=38.86 Aligned_cols=39 Identities=26% Similarity=0.302 Sum_probs=34.1
Q ss_pred CceEEEEEEeccchhhHHh-hccCCeecCceEEEecCCCC
Q 025931 7 WTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAPDY 45 (246)
Q Consensus 7 ~sqtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~~~~ 45 (246)
....|+|+|+++..++.|+ .|+|..|.|..|.|..+...
T Consensus 40 ~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 40 NVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 3457999999999999999 99999999999999866433
No 87
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=92.98 E-value=0.11 Score=37.66 Aligned_cols=34 Identities=24% Similarity=0.322 Sum_probs=28.5
Q ss_pred eEEEEEEeccchhhHHh-hc-cCCeecCceEEEecC
Q 025931 9 QIAYVTFKDMQGAETAV-LL-SGATIVDLSVSISLA 42 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TAL-LL-sGAtL~d~~V~It~~ 42 (246)
..|+|+|+++..|+.|| .| ++..|.|..|.|.-+
T Consensus 45 g~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 45 GFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp SEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred ceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46999999999999998 34 456799999999743
No 88
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=92.95 E-value=0.075 Score=38.99 Aligned_cols=34 Identities=12% Similarity=0.219 Sum_probs=31.2
Q ss_pred eEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931 9 QIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA 42 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~ 42 (246)
..|+|+|+++..++.|+- |+|..|.|..|.|..+
T Consensus 58 g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 92 (97)
T 2xnq_A 58 AFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVS 92 (97)
T ss_dssp SEEEEEESSHHHHHHHHHHHTTSEETTEECEEEEC
T ss_pred CEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 479999999999999998 9999999999999754
No 89
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=92.94 E-value=0.064 Score=38.92 Aligned_cols=34 Identities=15% Similarity=0.209 Sum_probs=31.5
Q ss_pred eEEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931 9 QIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA 42 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~ 42 (246)
..|+|+|+++..++.|+ .|+|..|.|..|.|..+
T Consensus 52 g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpj_A 52 GFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 86 (99)
T ss_dssp TEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred CEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEc
Confidence 47999999999999999 89999999999999755
No 90
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=92.86 E-value=0.097 Score=38.56 Aligned_cols=35 Identities=23% Similarity=0.323 Sum_probs=31.8
Q ss_pred ceEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931 8 TQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA 42 (246)
Q Consensus 8 sqtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~ 42 (246)
...|+|+|+++..++.|+- |+|..|.|..|.|..+
T Consensus 68 ~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 68 KGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp CSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred ceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 3589999999999999998 9999999999999754
No 91
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=92.79 E-value=0.076 Score=41.31 Aligned_cols=34 Identities=18% Similarity=0.355 Sum_probs=31.3
Q ss_pred eEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931 9 QIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA 42 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~ 42 (246)
..|+|+|+++..++.||- |+|..|.|..|.|..+
T Consensus 89 G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 89 GFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred eEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 489999999999999998 9999999999999644
No 92
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=92.79 E-value=0.085 Score=38.51 Aligned_cols=35 Identities=17% Similarity=0.366 Sum_probs=31.7
Q ss_pred ceEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931 8 TQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA 42 (246)
Q Consensus 8 sqtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~ 42 (246)
...|+|+|+++..++.|+- |+|..|.|..|.|..+
T Consensus 65 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 65 KGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp EEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred eeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 3579999999999999997 9999999999999754
No 93
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=92.76 E-value=0.061 Score=39.61 Aligned_cols=34 Identities=12% Similarity=0.142 Sum_probs=30.8
Q ss_pred eEEEEEEeccchhhHHh-hccCCeecC-ceEEEecC
Q 025931 9 QIAYVTFKDMQGAETAV-LLSGATIVD-LSVSISLA 42 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TAL-LLsGAtL~d-~~V~It~~ 42 (246)
..|+|+|+++..++.|+ -|+|..|.| ..|.|..+
T Consensus 55 G~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a 90 (100)
T 3ns6_A 55 GFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTM 90 (100)
T ss_dssp SEEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEES
T ss_pred eEEEEEECCHHHHHHHHHHhCCcccCCCeEEEEEEC
Confidence 47999999999999999 699999999 99999754
No 94
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.71 E-value=0.096 Score=37.42 Aligned_cols=34 Identities=24% Similarity=0.321 Sum_probs=31.1
Q ss_pred eEEEEEEeccchhhHHhh-ccC-CeecCceEEEecC
Q 025931 9 QIAYVTFKDMQGAETAVL-LSG-ATIVDLSVSISLA 42 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TALL-LsG-AtL~d~~V~It~~ 42 (246)
..|+|+|+++..++.|+- |+| ..|.|..|.|..+
T Consensus 45 g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 80 (93)
T 2cqh_A 45 GYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYS 80 (93)
T ss_dssp TEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEEC
T ss_pred CEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEc
Confidence 479999999999999996 999 9999999999865
No 95
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=92.69 E-value=0.077 Score=38.33 Aligned_cols=34 Identities=21% Similarity=0.489 Sum_probs=31.0
Q ss_pred eEEEEEEeccchhhHHhh-ccCCeec--CceEEEecC
Q 025931 9 QIAYVTFKDMQGAETAVL-LSGATIV--DLSVSISLA 42 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TALL-LsGAtL~--d~~V~It~~ 42 (246)
..|+|+|+++..++.|+- |+|..|. |..|.|..+
T Consensus 54 g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a 90 (97)
T 1why_A 54 SFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFA 90 (97)
T ss_dssp CCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEEC
T ss_pred CEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEEC
Confidence 379999999999999998 9999999 999999754
No 96
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=92.69 E-value=0.084 Score=40.69 Aligned_cols=35 Identities=9% Similarity=0.051 Sum_probs=31.8
Q ss_pred ceEEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931 8 TQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA 42 (246)
Q Consensus 8 sqtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~ 42 (246)
...|+|+|+++..++.|+ -|||..|.|..|.|..+
T Consensus 67 rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 67 DGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp SCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 347999999999999999 69999999999999765
No 97
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.57 E-value=0.081 Score=38.15 Aligned_cols=34 Identities=21% Similarity=0.434 Sum_probs=30.7
Q ss_pred eEEEEEEeccchhhHHhh-ccCCeecCce----EEEecC
Q 025931 9 QIAYVTFKDMQGAETAVL-LSGATIVDLS----VSISLA 42 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TALL-LsGAtL~d~~----V~It~~ 42 (246)
..|+|+|+++..++.|+- |+|..|.|.. |.|..+
T Consensus 53 g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a 91 (99)
T 2div_A 53 GYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYA 91 (99)
T ss_dssp EEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECCEEET
T ss_pred CEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEEEeec
Confidence 479999999999999998 9999999999 888644
No 98
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=92.44 E-value=0.16 Score=38.47 Aligned_cols=36 Identities=19% Similarity=0.402 Sum_probs=32.4
Q ss_pred ceEEEEEEeccchhhHHhh-ccCCeecCceEEEecCC
Q 025931 8 TQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAP 43 (246)
Q Consensus 8 sqtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~~ 43 (246)
...|+|+|+++..++.|+- |+|..|.|..|.|..+.
T Consensus 48 ~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 48 RGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp CCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred ccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 3589999999999999995 99999999999998654
No 99
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=92.38 E-value=0.14 Score=38.14 Aligned_cols=34 Identities=18% Similarity=0.393 Sum_probs=30.9
Q ss_pred ceEEEEEEeccchhhHHhh-ccCCeecCceEEEec
Q 025931 8 TQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISL 41 (246)
Q Consensus 8 sqtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~ 41 (246)
...|+|+|+++..++.|+- |+|..|.|..|.|..
T Consensus 82 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 82 KCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 3589999999999999997 999999999999864
No 100
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=92.37 E-value=0.098 Score=37.46 Aligned_cols=34 Identities=29% Similarity=0.448 Sum_probs=31.0
Q ss_pred eEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931 9 QIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA 42 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~ 42 (246)
..|+|+|+++..++.|+- |+|..|.|..|.|..+
T Consensus 52 g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 86 (97)
T 1nu4_A 52 GQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYA 86 (97)
T ss_dssp TCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred cEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 479999999999999996 8999999999999754
No 101
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=92.29 E-value=0.077 Score=42.30 Aligned_cols=34 Identities=9% Similarity=0.074 Sum_probs=31.8
Q ss_pred eEEEEEEeccchhhHHhhccCCeecCceEEEecC
Q 025931 9 QIAYVTFKDMQGAETAVLLSGATIVDLSVSISLA 42 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~ 42 (246)
-.|||+|+++..++.||-|+|..|.+..|.|..+
T Consensus 89 G~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V~~a 122 (136)
T 2hgl_A 89 GEAFVELGSEDDVKMALKKDRESMGHRYIEVFKS 122 (136)
T ss_dssp EEEEEECSSHHHHHHHHTTTEEESSSSEEEEEEC
T ss_pred eEEEEEECCHHHHHHHHhcCCCEECCEEEEEEEC
Confidence 4899999999999999999999999999999754
No 102
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.28 E-value=0.062 Score=40.45 Aligned_cols=35 Identities=17% Similarity=0.267 Sum_probs=32.0
Q ss_pred ceEEEEEEeccchhhHHhhccCCeecCceEEEecC
Q 025931 8 TQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLA 42 (246)
Q Consensus 8 sqtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~ 42 (246)
...|+|+|+++..++.||-++|..|.|..|.|...
T Consensus 52 rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 52 KGSIFVVFDSIESAKKFVETPGQKYKETDLLILFK 86 (103)
T ss_dssp CCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEH
T ss_pred ccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 35799999999999999999999999999999754
No 103
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=92.24 E-value=0.086 Score=41.42 Aligned_cols=36 Identities=17% Similarity=0.302 Sum_probs=32.7
Q ss_pred eEEEEEEeccchhhHHhh-ccCCeecCceEEEecCCC
Q 025931 9 QIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAPD 44 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~~~ 44 (246)
..|+|+|+++..++.||- |+|..|.|..|.|..+..
T Consensus 82 g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 118 (156)
T 1h2v_Z 82 GFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAG 118 (156)
T ss_dssp EEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEESC
T ss_pred eEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 589999999999999998 899999999999986543
No 104
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.20 E-value=0.081 Score=36.99 Aligned_cols=33 Identities=21% Similarity=0.261 Sum_probs=29.6
Q ss_pred eEEEEEEeccchhhHHhh-c-cCCeecCceEEEec
Q 025931 9 QIAYVTFKDMQGAETAVL-L-SGATIVDLSVSISL 41 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TALL-L-sGAtL~d~~V~It~ 41 (246)
..|+|+|+++..++.|+- | +|..|.|..|.|..
T Consensus 49 g~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ 83 (85)
T 2ytc_A 49 QCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKW 83 (85)
T ss_dssp TEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEE
T ss_pred CEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEe
Confidence 479999999999999996 5 99999999998864
No 105
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=92.20 E-value=0.057 Score=39.17 Aligned_cols=34 Identities=12% Similarity=0.219 Sum_probs=31.1
Q ss_pred eEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931 9 QIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA 42 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~ 42 (246)
..|+|+|+++..++.|+- |+|..|.|..|.|..+
T Consensus 46 g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 80 (96)
T 2kvi_A 46 AFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVS 80 (96)
T ss_dssp TEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEE
T ss_pred CEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEc
Confidence 379999999999999998 9999999999999754
No 106
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=92.07 E-value=0.11 Score=39.50 Aligned_cols=34 Identities=24% Similarity=0.320 Sum_probs=31.0
Q ss_pred eEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931 9 QIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA 42 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~ 42 (246)
..|+|+|+++..|+.|+- |||..|.|..|.|.-+
T Consensus 49 G~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 49 GLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp EEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred eEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 479999999999999995 9999999999999754
No 107
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.90 E-value=0.15 Score=37.67 Aligned_cols=34 Identities=21% Similarity=0.272 Sum_probs=31.4
Q ss_pred eEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931 9 QIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA 42 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~ 42 (246)
..|+|+|+++..++.|+- |+|..|.|..|.|..+
T Consensus 68 g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 68 GQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred eEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 589999999999999995 9999999999999865
No 108
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=91.79 E-value=0.12 Score=39.67 Aligned_cols=36 Identities=25% Similarity=0.463 Sum_probs=32.3
Q ss_pred ceEEEEEEeccchhhHHhh-ccCCeecCceEEEecCC
Q 025931 8 TQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAP 43 (246)
Q Consensus 8 sqtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~~ 43 (246)
...|+|+|+++..++.|+- |+|..|.|..|.|..+.
T Consensus 84 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 120 (139)
T 1u6f_A 84 RGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAA 120 (139)
T ss_dssp EEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESS
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 3479999999999999998 99999999999998653
No 109
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=91.65 E-value=0.29 Score=35.53 Aligned_cols=35 Identities=20% Similarity=0.265 Sum_probs=31.4
Q ss_pred ceEEEEEEeccchhhHHhh-c-cCCeecCceEEEecC
Q 025931 8 TQIAYVTFKDMQGAETAVL-L-SGATIVDLSVSISLA 42 (246)
Q Consensus 8 sqtA~VTFe~~~Aa~TALL-L-sGAtL~d~~V~It~~ 42 (246)
...|+|+|+++..++.||- | +|..|.|..|.|..+
T Consensus 58 ~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a 94 (107)
T 2cph_A 58 RGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWA 94 (107)
T ss_dssp CSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEEC
T ss_pred CceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeC
Confidence 4589999999999999995 6 899999999999865
No 110
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=91.30 E-value=0.14 Score=39.88 Aligned_cols=36 Identities=19% Similarity=0.402 Sum_probs=33.0
Q ss_pred eEEEEEEeccchhhHHhhccCCeecCceEEEecCCC
Q 025931 9 QIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAPD 44 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~~~ 44 (246)
..|+|+|+++..++.||-|+|..|.|..|.|..+..
T Consensus 55 g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~~~ 90 (175)
T 1fje_B 55 KFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKG 90 (175)
T ss_dssp TEEEEEESSHHHHHHHHHGGGEEETTEEEEEECCCC
T ss_pred cEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecCCC
Confidence 589999999999999999999999999999986643
No 111
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=91.27 E-value=0.064 Score=38.93 Aligned_cols=36 Identities=36% Similarity=0.527 Sum_probs=32.5
Q ss_pred ceEEEEEEeccchhhHHhh-ccCCeecCceEEEecCC
Q 025931 8 TQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAP 43 (246)
Q Consensus 8 sqtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~~ 43 (246)
...|+|+|+++..++.|+- |+|..|.|..|.|..+.
T Consensus 37 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 73 (101)
T 2hvz_A 37 PGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELST 73 (101)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESS
T ss_pred CCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEcc
Confidence 4579999999999999998 99999999999998653
No 112
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.22 E-value=0.19 Score=38.72 Aligned_cols=32 Identities=25% Similarity=0.462 Sum_probs=30.4
Q ss_pred EEEEEeccchhhHHhhccCCeecCceEEEecC
Q 025931 11 AYVTFKDMQGAETAVLLSGATIVDLSVSISLA 42 (246)
Q Consensus 11 A~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~ 42 (246)
+.|||++.+++..|+=|||..|.|..|+|...
T Consensus 52 ~fVtF~d~~sAlaAi~mnG~~v~Gr~LkV~lk 83 (91)
T 2dnr_A 52 MWVTFLEGSSALNVLSLNGKELLNRTITIALK 83 (91)
T ss_dssp EEEEESSHHHHHHGGGGTTCEETTEEEEEEEC
T ss_pred EEEEECChHHHHHHHhcCCeEeCCeEEEEEeC
Confidence 89999999999999999999999999999854
No 113
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=91.12 E-value=0.25 Score=38.45 Aligned_cols=34 Identities=29% Similarity=0.487 Sum_probs=31.3
Q ss_pred eEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931 9 QIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA 42 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~ 42 (246)
..|+|+|+++..++.||- |+|..|.|..|.|..+
T Consensus 113 g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 113 GFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred eEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 479999999999999995 9999999999999865
No 114
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=91.09 E-value=0.14 Score=38.41 Aligned_cols=34 Identities=18% Similarity=0.441 Sum_probs=31.0
Q ss_pred eEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931 9 QIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA 42 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~ 42 (246)
..|+|+|++...++.|+- |+|..|.|..|.|..+
T Consensus 66 g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 100 (108)
T 2jvo_A 66 GFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYS 100 (108)
T ss_dssp TEEEEECSSHHHHHHHHHHHTTCEETTEECEEESC
T ss_pred CEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 369999999999999996 9999999999999754
No 115
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=91.04 E-value=0.13 Score=38.92 Aligned_cols=34 Identities=15% Similarity=0.182 Sum_probs=30.2
Q ss_pred eEEEEEEeccchhhHHhh-ccCCeecCce-----EEEecC
Q 025931 9 QIAYVTFKDMQGAETAVL-LSGATIVDLS-----VSISLA 42 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TALL-LsGAtL~d~~-----V~It~~ 42 (246)
..|+|+|+++..++.||- |||..|.|.. |.|...
T Consensus 52 g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~ 91 (115)
T 3beg_B 52 GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 91 (115)
T ss_dssp SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEEC
T ss_pred CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccC
Confidence 579999999999999998 9999999988 777644
No 116
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.93 E-value=0.15 Score=38.21 Aligned_cols=35 Identities=20% Similarity=0.267 Sum_probs=31.8
Q ss_pred ceEEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931 8 TQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA 42 (246)
Q Consensus 8 sqtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~ 42 (246)
...|+|+|+++..++.|+ -|+|..|.|..|.|..+
T Consensus 64 ~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a 99 (112)
T 2dit_A 64 DGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAW 99 (112)
T ss_dssp TCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEEC
T ss_pred CEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 357999999999999999 79999999999999854
No 117
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=90.83 E-value=0.12 Score=40.81 Aligned_cols=35 Identities=23% Similarity=0.145 Sum_probs=31.6
Q ss_pred ceEEEEEEeccchhhHHhhccCCeecCceEEEecC
Q 025931 8 TQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLA 42 (246)
Q Consensus 8 sqtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~ 42 (246)
...|||+|+++..++.||-++|..|+|..|.|.++
T Consensus 84 rGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~a 118 (126)
T 2hgm_A 84 TGEAFVQFASQELAEKALGKHKERIGHRYIEVFKS 118 (126)
T ss_dssp CSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEEE
T ss_pred ceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEEC
Confidence 45899999999999999999999999999988654
No 118
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=90.72 E-value=0.18 Score=39.32 Aligned_cols=34 Identities=29% Similarity=0.487 Sum_probs=31.2
Q ss_pred eEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931 9 QIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA 42 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~ 42 (246)
..|+|+|+++..++.||- |+|..|.|..|.|..+
T Consensus 90 G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 90 GFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp SCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred eEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 379999999999999995 9999999999999865
No 119
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=90.67 E-value=0.097 Score=37.97 Aligned_cols=34 Identities=6% Similarity=0.191 Sum_probs=30.5
Q ss_pred eEEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931 9 QIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA 42 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~ 42 (246)
..|+|+|++...++.|+ .|+|..|.|..|.|..+
T Consensus 64 g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 64 GCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp TEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 47999999999999999 78999999999998643
No 120
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=90.56 E-value=0.31 Score=36.22 Aligned_cols=34 Identities=18% Similarity=0.330 Sum_probs=29.7
Q ss_pred eEEEEEEeccchhhHHh-hccCC----eecCceEEEecC
Q 025931 9 QIAYVTFKDMQGAETAV-LLSGA----TIVDLSVSISLA 42 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TAL-LLsGA----tL~d~~V~It~~ 42 (246)
..|+|+|+++..++.|| .|+|. .|+|..|.|.-+
T Consensus 54 G~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~A 92 (95)
T 2lkz_A 54 GFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFA 92 (95)
T ss_dssp SEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEEEEC
T ss_pred eEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEEEEc
Confidence 37999999999999999 58887 599999999755
No 121
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.53 E-value=0.36 Score=35.84 Aligned_cols=35 Identities=26% Similarity=0.233 Sum_probs=30.5
Q ss_pred eEEEEEEeccchhhHHhhccCCeecCceEEEecCC
Q 025931 9 QIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAP 43 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~~ 43 (246)
..|+|+|+++..++.||-..+..|.|..|.|..+.
T Consensus 60 g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~ 94 (116)
T 2cqd_A 60 GYGFVTMADRAAAERACKDPNPIIDGRKANVNLAY 94 (116)
T ss_dssp SEEEEEESSHHHHHHHHTCSSCEETTEECEEEEST
T ss_pred eEEEEEECCHHHHHHHHHhCCCcCCCEEEEEEEcc
Confidence 38999999999999999765559999999998653
No 122
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=90.52 E-value=0.26 Score=35.84 Aligned_cols=36 Identities=17% Similarity=0.223 Sum_probs=31.7
Q ss_pred ceEEEEEEeccchhhHHhh-ccCCee---cCceEEEecCC
Q 025931 8 TQIAYVTFKDMQGAETAVL-LSGATI---VDLSVSISLAP 43 (246)
Q Consensus 8 sqtA~VTFe~~~Aa~TALL-LsGAtL---~d~~V~It~~~ 43 (246)
...|+|+|+++..++.|+- |+|..| .+..|.|..+.
T Consensus 55 ~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~ 94 (106)
T 2dgp_A 55 KGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPAD 94 (106)
T ss_dssp CSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECC
T ss_pred ceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEECC
Confidence 3489999999999999995 999998 88999998653
No 123
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.50 E-value=0.56 Score=33.95 Aligned_cols=34 Identities=12% Similarity=0.129 Sum_probs=30.2
Q ss_pred eEEEEEEeccchhhHHhhccCCeecCceEEEecCC
Q 025931 9 QIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAP 43 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~~ 43 (246)
..|+|+|+++..++.||- ++..|.|..|.|..+.
T Consensus 58 g~afV~f~~~~~a~~A~~-~~~~~~g~~l~v~~a~ 91 (103)
T 2cqg_A 58 GFGFVRFTEYETQVKVMS-QRHMIDGRWCDCKLPN 91 (103)
T ss_dssp EEEEEEESSHHHHHHHHH-SCEEETTEEEEEECCC
T ss_pred ceEEEEECCHHHHHHHHH-cCCeeCCeEEEEEecC
Confidence 379999999999999998 7889999999998653
No 124
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=90.35 E-value=0.13 Score=38.64 Aligned_cols=34 Identities=24% Similarity=0.261 Sum_probs=30.7
Q ss_pred EEEEEEeccchhhHHhh-ccCCeecCceEEEecCC
Q 025931 10 IAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAP 43 (246)
Q Consensus 10 tA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~~ 43 (246)
.|+|+|++...++.|+- |+|..|.|..|.|.-+.
T Consensus 48 ~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 48 TAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp CEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred EEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 69999999999999995 99999999999997543
No 125
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=90.31 E-value=0.34 Score=35.41 Aligned_cols=35 Identities=20% Similarity=0.326 Sum_probs=31.5
Q ss_pred ceEEEEEEeccchhhHHhh-cc------CCeecCceEEEecC
Q 025931 8 TQIAYVTFKDMQGAETAVL-LS------GATIVDLSVSISLA 42 (246)
Q Consensus 8 sqtA~VTFe~~~Aa~TALL-Ls------GAtL~d~~V~It~~ 42 (246)
...|||+|++...++.||- |+ |..|.|..|.|..+
T Consensus 57 ~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a 98 (111)
T 1x4h_A 57 KGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLA 98 (111)
T ss_dssp CSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECC
T ss_pred ccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEEEEEC
Confidence 4589999999999999996 88 99999999999755
No 126
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.12 E-value=0.11 Score=37.76 Aligned_cols=35 Identities=26% Similarity=0.354 Sum_probs=31.7
Q ss_pred ceEEEEEEeccchhhHHhh-ccCCe-ecCceEEEecC
Q 025931 8 TQIAYVTFKDMQGAETAVL-LSGAT-IVDLSVSISLA 42 (246)
Q Consensus 8 sqtA~VTFe~~~Aa~TALL-LsGAt-L~d~~V~It~~ 42 (246)
...|+|+|+++..++.||- |+|.. |.|..|.|..+
T Consensus 51 ~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a 87 (104)
T 2dhg_A 51 KGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVA 87 (104)
T ss_dssp EEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBC
T ss_pred cceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEc
Confidence 3579999999999999998 99999 99999999755
No 127
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=90.03 E-value=0.25 Score=35.90 Aligned_cols=35 Identities=26% Similarity=0.412 Sum_probs=31.1
Q ss_pred ceEEEEEEeccchhhHHhh-ccCCeecC---ceEEEecC
Q 025931 8 TQIAYVTFKDMQGAETAVL-LSGATIVD---LSVSISLA 42 (246)
Q Consensus 8 sqtA~VTFe~~~Aa~TALL-LsGAtL~d---~~V~It~~ 42 (246)
...|+|+|+++..++.|+- |+|..|.+ ..|.|..+
T Consensus 56 ~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a 94 (105)
T 2dnh_A 56 KGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFA 94 (105)
T ss_dssp EEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEES
T ss_pred CcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEEC
Confidence 3589999999999999995 99999998 89999755
No 128
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.94 E-value=0.29 Score=35.76 Aligned_cols=36 Identities=17% Similarity=0.247 Sum_probs=31.0
Q ss_pred ceEEEEEEeccchhhHHhh-cc--CCeecCceEEEecCC
Q 025931 8 TQIAYVTFKDMQGAETAVL-LS--GATIVDLSVSISLAP 43 (246)
Q Consensus 8 sqtA~VTFe~~~Aa~TALL-Ls--GAtL~d~~V~It~~~ 43 (246)
...|+|+|+++..++.|+- |+ +..|.|..|.|..+.
T Consensus 52 ~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a~ 90 (109)
T 2dis_A 52 RGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAE 90 (109)
T ss_dssp CCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEESC
T ss_pred CcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEEEcC
Confidence 4589999999999999998 64 489999999998653
No 129
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=89.94 E-value=0.065 Score=42.98 Aligned_cols=34 Identities=21% Similarity=0.130 Sum_probs=31.4
Q ss_pred eEEEEEEeccchhhHHhhccCCeecCceEEEecC
Q 025931 9 QIAYVTFKDMQGAETAVLLSGATIVDLSVSISLA 42 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~ 42 (246)
-.|||+|+++..++.||-|++..|.+..|.|..+
T Consensus 87 GfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 87 GEADVEFATHEEAVAAMSKDRANMQHRYIELFLN 120 (139)
T ss_dssp CCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEEC
T ss_pred eEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEEC
Confidence 4799999999999999999999999999999755
No 130
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=89.93 E-value=0.22 Score=37.15 Aligned_cols=34 Identities=21% Similarity=0.341 Sum_probs=31.3
Q ss_pred eEEEEEEeccchhhHHhhccCCeecCceEEEecC
Q 025931 9 QIAYVTFKDMQGAETAVLLSGATIVDLSVSISLA 42 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~ 42 (246)
..|+|+|+++..++.||-..|..|.|..|.|..+
T Consensus 68 g~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 68 GFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 101 (109)
T ss_dssp TCEEEEESSHHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred cEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEc
Confidence 4899999999999999999999999999999754
No 131
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=89.60 E-value=0.21 Score=39.82 Aligned_cols=35 Identities=23% Similarity=0.323 Sum_probs=31.6
Q ss_pred ceEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931 8 TQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA 42 (246)
Q Consensus 8 sqtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~ 42 (246)
...|+|+|+++..++.||- |+|..|.|..|.|..+
T Consensus 114 ~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 114 KGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred eeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 3589999999999999996 9999999999999754
No 132
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=89.55 E-value=0.33 Score=36.81 Aligned_cols=35 Identities=26% Similarity=0.421 Sum_probs=31.9
Q ss_pred eEEEEEEeccchhhHHhh-ccCCeecCceEEEecCC
Q 025931 9 QIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAP 43 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~~ 43 (246)
..|+|+|+++..++.|+- |+|..|.|..|.|....
T Consensus 45 g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 45 GYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp EEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred eEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 579999999999999996 99999999999997653
No 133
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=89.49 E-value=0.23 Score=38.97 Aligned_cols=34 Identities=21% Similarity=0.350 Sum_probs=31.0
Q ss_pred eEEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931 9 QIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA 42 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~ 42 (246)
..|+|+|+++..|+.|+ -|||..|.|..|.|.-+
T Consensus 73 G~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a 107 (127)
T 2a3j_A 73 GKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFS 107 (127)
T ss_dssp CCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEEC
T ss_pred CEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEc
Confidence 47999999999999999 69999999999999744
No 134
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=89.44 E-value=0.2 Score=41.21 Aligned_cols=35 Identities=23% Similarity=0.345 Sum_probs=31.5
Q ss_pred ceEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931 8 TQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA 42 (246)
Q Consensus 8 sqtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~ 42 (246)
...|+|+|+++..++.|+- |||..|.|..|.|..+
T Consensus 143 ~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a 178 (213)
T 4f02_A 143 KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 178 (213)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred ceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 3479999999999999994 9999999999999754
No 135
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=88.97 E-value=0.069 Score=39.94 Aligned_cols=34 Identities=26% Similarity=0.358 Sum_probs=31.2
Q ss_pred eEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931 9 QIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA 42 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~ 42 (246)
..|+|+|+++..++.|+- |+|..|.|..|.|..+
T Consensus 58 g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 92 (116)
T 2lcw_A 58 GEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFA 92 (116)
Confidence 479999999999999998 9999999999999754
No 136
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=89.35 E-value=0.21 Score=37.67 Aligned_cols=35 Identities=26% Similarity=0.361 Sum_probs=31.1
Q ss_pred ceEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931 8 TQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA 42 (246)
Q Consensus 8 sqtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~ 42 (246)
...+||+|+++..|+.|+- |||..+.|..|.|.-+
T Consensus 68 ~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 68 VGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELS 103 (104)
T ss_dssp EEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEEC
T ss_pred cEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEc
Confidence 4589999999999999996 9999999999998643
No 137
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=89.30 E-value=0.18 Score=38.92 Aligned_cols=35 Identities=14% Similarity=0.274 Sum_probs=32.1
Q ss_pred ceEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931 8 TQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA 42 (246)
Q Consensus 8 sqtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~ 42 (246)
...|+|+|.++..+..|+- |+|..|.|..|.|..+
T Consensus 92 ~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 127 (143)
T 3egn_A 92 KGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFA 127 (143)
T ss_dssp EEEEEEECSSHHHHHHHHHHHTTBEETTEECEEEEC
T ss_pred ccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 3589999999999999998 9999999999999755
No 138
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=89.27 E-value=0.19 Score=38.69 Aligned_cols=34 Identities=29% Similarity=0.601 Sum_probs=31.2
Q ss_pred eEEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931 9 QIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA 42 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~ 42 (246)
..|+|+|+++..++.|+ -|+|..|.|..|.|..+
T Consensus 74 g~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 74 NCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp TEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 47999999999999999 79999999999999754
No 139
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=89.18 E-value=0.24 Score=37.44 Aligned_cols=35 Identities=17% Similarity=0.256 Sum_probs=31.3
Q ss_pred ceEEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931 8 TQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA 42 (246)
Q Consensus 8 sqtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~ 42 (246)
...+||+|+++..|..|+ -|||-.+.|..|.|.-+
T Consensus 59 ~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~ 94 (105)
T 3v4m_A 59 CGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYC 94 (105)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred cEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEe
Confidence 357999999999999998 79999999999999743
No 140
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=89.15 E-value=0.32 Score=41.04 Aligned_cols=35 Identities=29% Similarity=0.434 Sum_probs=32.2
Q ss_pred ceEEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931 8 TQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA 42 (246)
Q Consensus 8 sqtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~ 42 (246)
...|+|+|+++..++.|+ .|+|..|.|..|.|..+
T Consensus 52 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 87 (282)
T 3pgw_A 52 RGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYA 87 (282)
T ss_pred ceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEEe
Confidence 358999999999999999 99999999999999754
No 141
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.13 E-value=0.076 Score=37.24 Aligned_cols=32 Identities=22% Similarity=0.269 Sum_probs=29.1
Q ss_pred eEEEEEEeccchhhHHhh-ccCCeecCceEEEe
Q 025931 9 QIAYVTFKDMQGAETAVL-LSGATIVDLSVSIS 40 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It 40 (246)
..|+|+|+++..++.|+- |+|..|.|..+.+.
T Consensus 48 g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 80 (85)
T 1x4e_A 48 GYGFVDFDSPSAAQKAVTALKASGVQAQMAKQS 80 (85)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHTCCEESCCSS
T ss_pred cEEEEEECCHHHHHHHHHHhcCCeEeeEEEeec
Confidence 479999999999999998 99999999988774
No 142
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=89.03 E-value=0.4 Score=36.64 Aligned_cols=35 Identities=26% Similarity=0.446 Sum_probs=31.7
Q ss_pred eEEEEEEeccchhhHHh-hccCCeecCceEEEecCC
Q 025931 9 QIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAP 43 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~~ 43 (246)
..|+|+|+++..++.|+ .|+|..|.|..|.|..+.
T Consensus 46 g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 46 GYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp SEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred eEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 47999999999999999 599999999999998553
No 143
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.00 E-value=0.12 Score=40.43 Aligned_cols=35 Identities=17% Similarity=0.060 Sum_probs=31.6
Q ss_pred ceEEEEEEeccchhhHHhhccCCeecCceEEEecC
Q 025931 8 TQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLA 42 (246)
Q Consensus 8 sqtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~ 42 (246)
...|||+|+++..++.||-++|..|++..|.|..+
T Consensus 68 ~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~~a 102 (123)
T 2dha_A 68 TGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRS 102 (123)
T ss_dssp EEEEEECCSSHHHHHHHHTTTTEESSSCEECCEEE
T ss_pred eeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEEC
Confidence 35899999999999999999999999999988654
No 144
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=88.93 E-value=0.35 Score=32.92 Aligned_cols=34 Identities=18% Similarity=0.315 Sum_probs=30.2
Q ss_pred ceEEEEEEeccchhhHHhhccCCeecCceEEEec
Q 025931 8 TQIAYVTFKDMQGAETAVLLSGATIVDLSVSISL 41 (246)
Q Consensus 8 sqtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~ 41 (246)
...|+|+|+++..++.|+-..+..|.|..|.|..
T Consensus 42 ~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~ 75 (77)
T 1uaw_A 42 RGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKV 75 (77)
T ss_dssp SSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEE
T ss_pred CceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEe
Confidence 3589999999999999998777999999999864
No 145
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=88.21 E-value=0.35 Score=34.98 Aligned_cols=34 Identities=15% Similarity=0.164 Sum_probs=30.3
Q ss_pred ceEEEEEEeccchhhHHhhccCCeecCceEEEecC
Q 025931 8 TQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLA 42 (246)
Q Consensus 8 sqtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~ 42 (246)
...|+|+|+++..++.|+- +|..|.|..|.|..+
T Consensus 50 ~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 50 KGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEE
T ss_pred cceEEEEECCHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 3589999999999999999 999999999998643
No 146
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.19 E-value=0.33 Score=37.71 Aligned_cols=31 Identities=29% Similarity=0.321 Sum_probs=29.8
Q ss_pred EEEEEeccchhhHHhhccCCeecCceEEEec
Q 025931 11 AYVTFKDMQGAETAVLLSGATIVDLSVSISL 41 (246)
Q Consensus 11 A~VTFe~~~Aa~TALLLsGAtL~d~~V~It~ 41 (246)
+.|||.+.+.|..|+=|+|..|.|..|+|..
T Consensus 61 ~fVtF~d~~sAl~AI~ldG~~v~Gr~L~V~~ 91 (95)
T 1ufw_A 61 MLVTFADSHSALSVLDVDGMKVKGRAVKISG 91 (95)
T ss_dssp EEEECSCSHHHHHHHHGGGSEETTEEEEEEC
T ss_pred EEEEEcChHHHHHHHhcCCeeeCCeEEEEec
Confidence 8999999999999999999999999999974
No 147
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=88.05 E-value=0.36 Score=36.54 Aligned_cols=35 Identities=20% Similarity=0.267 Sum_probs=31.6
Q ss_pred ceEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931 8 TQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA 42 (246)
Q Consensus 8 sqtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~ 42 (246)
...+||+|+++..|.-|+- |||..+.|..|.|.-+
T Consensus 56 ~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a 91 (105)
T 2pe8_A 56 AVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFY 91 (105)
T ss_dssp SEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred cEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEc
Confidence 4589999999999999995 9999999999999755
No 148
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=87.61 E-value=0.37 Score=41.08 Aligned_cols=34 Identities=9% Similarity=0.038 Sum_probs=31.3
Q ss_pred eEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931 9 QIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA 42 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~ 42 (246)
..|||+|++...++.||- |+|..|.|..|.|..+
T Consensus 113 GfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a 147 (229)
T 3q2s_C 113 GFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPV 147 (229)
T ss_dssp EEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEEC
T ss_pred eEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEEC
Confidence 379999999999999998 9999999999999754
No 149
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=87.49 E-value=0.51 Score=37.94 Aligned_cols=34 Identities=18% Similarity=0.145 Sum_probs=30.6
Q ss_pred eEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931 9 QIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA 42 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~ 42 (246)
..|+|+|+++..++.||- |+|..|.|..|.|..+
T Consensus 100 GfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a 134 (156)
T 3n9u_C 100 GYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPA 134 (156)
T ss_dssp EEEEEEESCHHHHHHHHHHSTTCEETTEECEEEEC
T ss_pred eEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEc
Confidence 379999999999999985 5999999999999755
No 150
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=87.41 E-value=0.33 Score=45.50 Aligned_cols=35 Identities=14% Similarity=0.255 Sum_probs=31.9
Q ss_pred ceEEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931 8 TQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA 42 (246)
Q Consensus 8 sqtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~ 42 (246)
-..|||+|+++..+..|| .|||..|.|..|.|..+
T Consensus 144 kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 144 RGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred cceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 347999999999999999 89999999999999754
No 151
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=87.25 E-value=0.52 Score=39.97 Aligned_cols=38 Identities=16% Similarity=0.178 Sum_probs=34.4
Q ss_pred CceEEEEEEeccchhhHHhhccCCeecCceEEEecCCC
Q 025931 7 WTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAPD 44 (246)
Q Consensus 7 ~sqtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~~~ 44 (246)
....|+|+|.++..++.||-|+|..|.|..|.|.....
T Consensus 80 ~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~~~ 117 (292)
T 2ghp_A 80 NFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHLTE 117 (292)
T ss_dssp SSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEECCS
T ss_pred CcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEEECCC
Confidence 45799999999999999999999999999999987643
No 152
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=86.57 E-value=0.74 Score=36.13 Aligned_cols=36 Identities=14% Similarity=0.155 Sum_probs=32.7
Q ss_pred eEEEEEEeccchhhHHhhccCCeecCceEEEecCCC
Q 025931 9 QIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAPD 44 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~~~ 44 (246)
..|+|+|.++..++.||-++|..|.|..|.|..+..
T Consensus 56 g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~~~ 91 (196)
T 1l3k_A 56 GFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVS 91 (196)
T ss_dssp EEEEEEESSHHHHHHHHHTCSCEETTEECEEEECCC
T ss_pred ceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecccC
Confidence 489999999999999999999999999999986533
No 153
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=86.49 E-value=0.42 Score=39.81 Aligned_cols=34 Identities=15% Similarity=0.240 Sum_probs=31.3
Q ss_pred eEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931 9 QIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA 42 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~ 42 (246)
..|+|+|+++..|+.|+- |||..|.|..|.|..+
T Consensus 43 g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 43 GAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp TCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 469999999999999995 9999999999999854
No 154
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=86.09 E-value=0.57 Score=37.37 Aligned_cols=36 Identities=11% Similarity=0.226 Sum_probs=31.1
Q ss_pred CceEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931 7 WTQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA 42 (246)
Q Consensus 7 ~sqtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~ 42 (246)
....|+|+|+++..++.||- |+|..|.|..|.|...
T Consensus 69 ~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 69 HKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp CCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred cCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 34579999999999999998 9999999999999643
No 155
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=85.11 E-value=0.66 Score=39.12 Aligned_cols=35 Identities=17% Similarity=0.240 Sum_probs=32.2
Q ss_pred ceEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931 8 TQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA 42 (246)
Q Consensus 8 sqtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~ 42 (246)
...|+|+|.++..+..|+. |+|..|.|..|.|.-+
T Consensus 226 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 261 (284)
T 3smz_A 226 KGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFC 261 (284)
T ss_dssp EEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred ccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEe
Confidence 4689999999999999999 9999999999999755
No 156
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=84.26 E-value=0.47 Score=37.79 Aligned_cols=34 Identities=26% Similarity=0.322 Sum_probs=31.1
Q ss_pred EEEEEEeccchhhHHhh-ccCCeecCceEEEecCC
Q 025931 10 IAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAP 43 (246)
Q Consensus 10 tA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~~ 43 (246)
.|+|+|+++..++.|+- |+|..|.|..|.|..+.
T Consensus 43 ~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 43 NALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred EEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 59999999999999996 99999999999997553
No 157
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=83.74 E-value=0.62 Score=38.62 Aligned_cols=34 Identities=26% Similarity=0.324 Sum_probs=31.1
Q ss_pred EEEEEEeccchhhHHh-hccCCeecCceEEEecCC
Q 025931 10 IAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAP 43 (246)
Q Consensus 10 tA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~~ 43 (246)
.|+|+|.++..++.|+ .|+|..|.|..|.|..+.
T Consensus 74 ~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 108 (229)
T 2adc_A 74 NALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 108 (229)
T ss_dssp CEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCS
T ss_pred EEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 5999999999999999 599999999999998553
No 158
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.62 E-value=1.1 Score=34.70 Aligned_cols=34 Identities=18% Similarity=0.235 Sum_probs=31.2
Q ss_pred eEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931 9 QIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA 42 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~ 42 (246)
..|+|+|.+...|+.|+- |+|..|.|.+|+|.-+
T Consensus 47 G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A 81 (96)
T 2diu_A 47 CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFT 81 (96)
T ss_dssp TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESS
T ss_pred CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEec
Confidence 469999999999999995 9999999999999755
No 159
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=83.54 E-value=0.76 Score=33.82 Aligned_cols=33 Identities=9% Similarity=0.222 Sum_probs=28.0
Q ss_pred eEEEEEEeccchhhHHhh-ccCCee--------cCceEEEec
Q 025931 9 QIAYVTFKDMQGAETAVL-LSGATI--------VDLSVSISL 41 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TALL-LsGAtL--------~d~~V~It~ 41 (246)
..|+|+|+++..++.|+- |+|..| .+.+|.|.-
T Consensus 67 g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l~v~~ 108 (114)
T 1x5o_A 67 GVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKF 108 (114)
T ss_dssp EEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCBEEEE
T ss_pred eEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCceeEEc
Confidence 479999999999999998 999999 466677753
No 160
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=83.32 E-value=0.64 Score=35.98 Aligned_cols=34 Identities=21% Similarity=0.231 Sum_probs=30.5
Q ss_pred eEEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931 9 QIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA 42 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~ 42 (246)
..+||+|+++..|+.|+ -|||-.++|..|.|.-+
T Consensus 56 G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~ 90 (114)
T 3s6e_A 56 GNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYV 90 (114)
T ss_dssp CCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred EEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEE
Confidence 46999999999999998 59999999999999743
No 161
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=80.62 E-value=0.99 Score=38.21 Aligned_cols=35 Identities=20% Similarity=0.304 Sum_probs=31.8
Q ss_pred eEEEEEEeccchhhHHhh-ccCCeecCceEEEecCC
Q 025931 9 QIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAP 43 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~~ 43 (246)
..|+|+|.++..++.|+- |+|..|.|..|.|..+.
T Consensus 59 g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 94 (261)
T 3sde_A 59 GFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFAT 94 (261)
T ss_dssp TEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred cEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecc
Confidence 479999999999999997 99999999999998653
No 162
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=80.52 E-value=1.1 Score=33.59 Aligned_cols=34 Identities=15% Similarity=0.166 Sum_probs=29.3
Q ss_pred eEEEEEEeccchhhHHhh---ccCCeecCceEEEecC
Q 025931 9 QIAYVTFKDMQGAETAVL---LSGATIVDLSVSISLA 42 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TALL---LsGAtL~d~~V~It~~ 42 (246)
..|+|+|+++..|+.|+- .++..|.|..|.|.-+
T Consensus 52 g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 88 (101)
T 2cq1_A 52 NQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYS 88 (101)
T ss_dssp TEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEC
T ss_pred CEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEc
Confidence 469999999999999985 3678999999999754
No 163
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=80.04 E-value=1 Score=34.91 Aligned_cols=34 Identities=18% Similarity=0.191 Sum_probs=30.5
Q ss_pred eEEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931 9 QIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA 42 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~ 42 (246)
-.+||+|+++..|..|+ -|||-.++|..|.|.-+
T Consensus 72 G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~ 106 (118)
T 3ue2_A 72 VKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVY 106 (118)
T ss_dssp EEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred EEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEc
Confidence 47999999999999998 59999999999999744
No 164
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=79.67 E-value=1.3 Score=34.91 Aligned_cols=33 Identities=33% Similarity=0.395 Sum_probs=28.7
Q ss_pred EEEEEEeccchhhHHhh-ccCCeecC--ceEEEecC
Q 025931 10 IAYVTFKDMQGAETAVL-LSGATIVD--LSVSISLA 42 (246)
Q Consensus 10 tA~VTFe~~~Aa~TALL-LsGAtL~d--~~V~It~~ 42 (246)
.|+|+|+++..|+.|+- |+|..|.| ..|.|.-+
T Consensus 64 ~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 64 QAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 59999999999999997 99999988 47888633
No 165
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=79.10 E-value=1.6 Score=36.68 Aligned_cols=35 Identities=11% Similarity=0.147 Sum_probs=32.0
Q ss_pred eEEEEEEeccchhhHHh-hccCCeecCceEEEecCC
Q 025931 9 QIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAP 43 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~~ 43 (246)
..|+|+|.++..+..|+ .|+|..|.|..|.|..+.
T Consensus 138 g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 138 GYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp EEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred eEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 47999999999999999 999999999999997553
No 166
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=77.59 E-value=0.95 Score=34.86 Aligned_cols=34 Identities=15% Similarity=0.260 Sum_probs=29.0
Q ss_pred eEEEEEEeccchhhHHhh-cc--CCeecCceEEEecC
Q 025931 9 QIAYVTFKDMQGAETAVL-LS--GATIVDLSVSISLA 42 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TALL-Ls--GAtL~d~~V~It~~ 42 (246)
..|+|+|+++..|+.|+- |+ |..|.|..|.|.-+
T Consensus 53 GfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A 89 (105)
T 1sjq_A 53 NQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 89 (105)
T ss_dssp TEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCC
T ss_pred CEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 469999999999999996 55 58999999999644
No 167
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=75.56 E-value=2.9 Score=31.61 Aligned_cols=36 Identities=22% Similarity=0.359 Sum_probs=29.6
Q ss_pred EEEEEEeccchhhHHhh-cc--CCeecCceEEEecCCCC
Q 025931 10 IAYVTFKDMQGAETAVL-LS--GATIVDLSVSISLAPDY 45 (246)
Q Consensus 10 tA~VTFe~~~Aa~TALL-Ls--GAtL~d~~V~It~~~~~ 45 (246)
.|+|+|+++..|+.|+- |+ +..|.|.+|.|.-+..+
T Consensus 54 ~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 92 (102)
T 1x4d_A 54 EAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKY 92 (102)
T ss_dssp CEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCC
T ss_pred EEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCC
Confidence 59999999999999985 55 46799999999765433
No 168
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=74.65 E-value=1.3 Score=34.70 Aligned_cols=34 Identities=15% Similarity=0.260 Sum_probs=29.1
Q ss_pred eEEEEEEeccchhhHHhh-cc--CCeecCceEEEecC
Q 025931 9 QIAYVTFKDMQGAETAVL-LS--GATIVDLSVSISLA 42 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TALL-Ls--GAtL~d~~V~It~~ 42 (246)
..|+|+|+++..|+.|+- |+ +..|.|..|.|.-+
T Consensus 68 G~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a 104 (119)
T 2ad9_A 68 NQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 104 (119)
T ss_dssp TEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEEC
T ss_pred CEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEc
Confidence 469999999999999985 55 57899999999755
No 169
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=74.26 E-value=1.8 Score=36.07 Aligned_cols=34 Identities=26% Similarity=0.391 Sum_probs=29.6
Q ss_pred eEEEEEEeccchhhHHhh-ccCCeecC--ceEEEecC
Q 025931 9 QIAYVTFKDMQGAETAVL-LSGATIVD--LSVSISLA 42 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TALL-LsGAtL~d--~~V~It~~ 42 (246)
-.|+|+|+++..|+.|+- |+|..|.| ..|.|.-+
T Consensus 85 gfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 85 FQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp EEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred CEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 369999999999999998 99999965 88888743
No 170
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=74.05 E-value=2.2 Score=36.02 Aligned_cols=35 Identities=20% Similarity=0.344 Sum_probs=32.1
Q ss_pred ceEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931 8 TQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA 42 (246)
Q Consensus 8 sqtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~ 42 (246)
...|+|+|.++..+..|+- |+|..|.|..|.|..+
T Consensus 159 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 159 RRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 4579999999999999999 9999999999999754
No 171
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=73.69 E-value=1.5 Score=33.48 Aligned_cols=33 Identities=27% Similarity=0.313 Sum_probs=28.1
Q ss_pred EEEEEEeccchhhHHhh-ccCCe--ecCceEEEecC
Q 025931 10 IAYVTFKDMQGAETAVL-LSGAT--IVDLSVSISLA 42 (246)
Q Consensus 10 tA~VTFe~~~Aa~TALL-LsGAt--L~d~~V~It~~ 42 (246)
.|+|+|+++..|+.|+- |+|.. |.|.+|.|.-.
T Consensus 59 ~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S 94 (100)
T 3r27_A 59 QALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYS 94 (100)
T ss_dssp EEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEEC
T ss_pred EEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEec
Confidence 79999999999999994 77764 88999999643
No 172
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=72.51 E-value=1.3 Score=33.29 Aligned_cols=34 Identities=18% Similarity=0.265 Sum_probs=28.6
Q ss_pred eEEEEEEeccchhhHHhh-ccC--CeecCceEEEecC
Q 025931 9 QIAYVTFKDMQGAETAVL-LSG--ATIVDLSVSISLA 42 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TALL-LsG--AtL~d~~V~It~~ 42 (246)
..|+|+|++...|+.|+- |+| ..|.|..|.|.-+
T Consensus 52 g~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a 88 (104)
T 1wex_A 52 RQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYS 88 (104)
T ss_dssp TEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEEC
T ss_pred CEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 369999999999999996 654 5699999999755
No 173
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=71.99 E-value=2.2 Score=33.35 Aligned_cols=32 Identities=9% Similarity=0.435 Sum_probs=27.2
Q ss_pred EEEEEEeccchhhHHhh-ccCCee-----cCceEEEec
Q 025931 10 IAYVTFKDMQGAETAVL-LSGATI-----VDLSVSISL 41 (246)
Q Consensus 10 tA~VTFe~~~Aa~TALL-LsGAtL-----~d~~V~It~ 41 (246)
-|+|+|+++..|+.|+- |||..| .+.++.|.-
T Consensus 65 faFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~ 102 (114)
T 2cq2_A 65 YSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNF 102 (114)
T ss_dssp CEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEE
T ss_pred EEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEe
Confidence 69999999999999996 999998 566777753
No 174
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.98 E-value=1.9 Score=32.04 Aligned_cols=35 Identities=23% Similarity=0.300 Sum_probs=26.0
Q ss_pred ceEEEEEEeccchhhHHhhc----cCC--------eecCceEEEecC
Q 025931 8 TQIAYVTFKDMQGAETAVLL----SGA--------TIVDLSVSISLA 42 (246)
Q Consensus 8 sqtA~VTFe~~~Aa~TALLL----sGA--------tL~d~~V~It~~ 42 (246)
...|+|+|+++..++.||-. +|- .+.+..|.|.|+
T Consensus 52 ~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~~~~~~~~~~~~~~~v~p~ 98 (114)
T 2dnl_A 52 KGYAFLLFQEESSVQALIDACLEEDGKLYLCVSSPTIKDKPVQIRPW 98 (114)
T ss_dssp TSEEEECCSSHHHHHHHHHHSEEETTEEEEEECCSSSCSEEEEEECC
T ss_pred ccEEEEEECCHHHHHHHHHhhhhcCCcEEEeccCCCcCCCeeeccCC
Confidence 35899999999999999842 555 445566677665
No 175
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=68.58 E-value=3.3 Score=31.99 Aligned_cols=35 Identities=14% Similarity=0.145 Sum_probs=29.3
Q ss_pred eEEEEEEeccchhhHHhh-c--cCCeecCceEEEecCC
Q 025931 9 QIAYVTFKDMQGAETAVL-L--SGATIVDLSVSISLAP 43 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TALL-L--sGAtL~d~~V~It~~~ 43 (246)
..|+|+|+++..|+.|+- | ++..|.|..|.|.-+.
T Consensus 63 g~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~ 100 (112)
T 1x4f_A 63 SQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSE 100 (112)
T ss_dssp TEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEEC
T ss_pred CEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECc
Confidence 469999999999999986 5 4677999999997553
No 176
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=68.32 E-value=4 Score=32.54 Aligned_cols=32 Identities=28% Similarity=0.431 Sum_probs=28.1
Q ss_pred EEEEEEeccchhhHHhh-ccCCeecC--ceEEEec
Q 025931 10 IAYVTFKDMQGAETAVL-LSGATIVD--LSVSISL 41 (246)
Q Consensus 10 tA~VTFe~~~Aa~TALL-LsGAtL~d--~~V~It~ 41 (246)
.|+|+|+++..|+.|+- |+|..|.| ..|.|.-
T Consensus 68 qAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ 102 (130)
T 3zzy_A 68 QALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 102 (130)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEE
T ss_pred EEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEe
Confidence 49999999999999985 99999988 7788863
No 177
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=67.76 E-value=3.9 Score=33.33 Aligned_cols=35 Identities=29% Similarity=0.304 Sum_probs=31.0
Q ss_pred ceEEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931 8 TQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA 42 (246)
Q Consensus 8 sqtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~ 42 (246)
...|+|+|+++..++.|| .|+|..+.+..|.+...
T Consensus 57 ~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 57 LGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred cccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 358999999999999999 68999999999998754
No 178
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=66.76 E-value=1.7 Score=33.09 Aligned_cols=33 Identities=18% Similarity=0.390 Sum_probs=28.0
Q ss_pred eEEEEEEeccchhhHHh-hccCC----eecCceEEEecC
Q 025931 9 QIAYVTFKDMQGAETAV-LLSGA----TIVDLSVSISLA 42 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TAL-LLsGA----tL~d~~V~It~~ 42 (246)
..|||+|+++ .+..|+ .|+|. .|.|..|.|..+
T Consensus 68 G~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~a 105 (131)
T 2m2b_A 68 GFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTINVEFA 105 (131)
T ss_dssp SCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCCCEEC
T ss_pred eEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEEEEEC
Confidence 4799999999 777775 68999 999999999755
No 179
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=65.64 E-value=3.6 Score=31.30 Aligned_cols=35 Identities=20% Similarity=0.262 Sum_probs=28.5
Q ss_pred ceEEEEEEeccchhhHHh-hccCCeec---CceEEEecC
Q 025931 8 TQIAYVTFKDMQGAETAV-LLSGATIV---DLSVSISLA 42 (246)
Q Consensus 8 sqtA~VTFe~~~Aa~TAL-LLsGAtL~---d~~V~It~~ 42 (246)
...|+|+|+++..++.|+ .|+|..+. +..+.+.+.
T Consensus 47 ~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~ 85 (175)
T 3nmr_A 47 KGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPA 85 (175)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEEC
T ss_pred ceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEccc
Confidence 457999999999999999 59998886 566777654
No 180
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=63.24 E-value=6.4 Score=32.33 Aligned_cols=34 Identities=21% Similarity=0.309 Sum_probs=27.6
Q ss_pred eEEEEEEec-----cch---hhHHhh---ccCCeecCceEEEecC
Q 025931 9 QIAYVTFKD-----MQG---AETAVL---LSGATIVDLSVSISLA 42 (246)
Q Consensus 9 qtA~VTFe~-----~~A---a~TALL---LsGAtL~d~~V~It~~ 42 (246)
-.++|+|.| ..| +..|+. |+|..|+|..|.|...
T Consensus 49 GfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I~Gr~irV~ln 93 (136)
T 2j8a_A 49 HVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFIMGFKFEVILN 93 (136)
T ss_dssp EEEEEECC------CCHHHHHHHHHHHTTTTCEEETTEEEEEEEC
T ss_pred eEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCeecCcEEEEEEC
Confidence 579999996 343 889987 8999999999999743
No 181
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=61.47 E-value=6.2 Score=29.94 Aligned_cols=34 Identities=15% Similarity=0.218 Sum_probs=29.3
Q ss_pred eEEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931 9 QIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA 42 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~ 42 (246)
--|+|+|.++.-|+.|+ -|||+.|.|+.|.|.-+
T Consensus 44 GfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 44 GIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp TEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred cEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 36999999998777777 59999999999999754
No 182
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=59.98 E-value=5.5 Score=30.17 Aligned_cols=33 Identities=9% Similarity=0.176 Sum_probs=28.0
Q ss_pred eEEEEEEeccchhhHHhhccCCeecCceEEEecC
Q 025931 9 QIAYVTFKDMQGAETAVLLSGATIVDLSVSISLA 42 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~ 42 (246)
..|+|+|+++..++.|+- ++..|.|..|.|...
T Consensus 46 g~afV~f~~~~~a~~A~~-~~~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 46 GFGFLSFEKPSSVDEVVK-TQHILDGKVIDPKRA 78 (167)
T ss_dssp SCEEEEESSTHHHHHHHH-SCCEETTEECCCEEC
T ss_pred ceEEEEEccHHHHHHHHh-cccccCCeEcccccc
Confidence 479999999999999998 577888888887643
No 183
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.48 E-value=11 Score=28.21 Aligned_cols=33 Identities=33% Similarity=0.323 Sum_probs=27.0
Q ss_pred eEEEEEEeccchhhHHhhccCCeecCceEEEecC
Q 025931 9 QIAYVTFKDMQGAETAVLLSGATIVDLSVSISLA 42 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~ 42 (246)
..|+|+|+++..++.|+-- +..+.+.+|.|.-+
T Consensus 55 GfaFVeF~~~~~A~~Ai~~-~~~~~g~~l~V~~a 87 (100)
T 2d9o_A 55 GTAVVEFATVKAAELAVQN-EVGLVDNPLKISWL 87 (100)
T ss_dssp SEEEEEESCHHHHHHHHHT-CCBCSSSBCEEECS
T ss_pred CEEEEEECCHHHHHHHHHh-cCCCCCCeEEEEEc
Confidence 3799999999999999875 44578899999643
No 184
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=57.62 E-value=6.1 Score=32.30 Aligned_cols=32 Identities=19% Similarity=0.242 Sum_probs=29.9
Q ss_pred EEEEEeccchhhHHhhccCCeecCceEEEecC
Q 025931 11 AYVTFKDMQGAETAVLLSGATIVDLSVSISLA 42 (246)
Q Consensus 11 A~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~ 42 (246)
..|||.++.+|.-||.-||..|.|.-|-|.|+
T Consensus 65 ikItYds~~~A~rAL~~NG~ii~G~mIGV~Py 96 (132)
T 3p3d_A 65 TKITYDNPASAVDALLENGAVFNGVLLGVIPY 96 (132)
T ss_dssp EEEEBSSHHHHHHHHTTTTCEETTEECEEEEC
T ss_pred EEEEcCCHHHHHHHHHhCCeEeCcEEEEEEEC
Confidence 48999999999999999999999998888877
No 185
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.40 E-value=9.2 Score=30.09 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=31.0
Q ss_pred eEEEEEEeccchhhHHhhccCCeecCceEEEecCCCC
Q 025931 9 QIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAPDY 45 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~~~~ 45 (246)
++|.|||.++..+++-|=-..=.|.+..|.|.|....
T Consensus 48 ~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~P~~~~ 84 (104)
T 2dhx_A 48 CGGVLTFREPADAERVLAQADHELHGAQLSLRPAPPR 84 (104)
T ss_dssp TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEEECCCC
T ss_pred CcEEEEEcChHHHHHHhcCCcceecCeEEEEEcCCCC
Confidence 7899999999999987766677888899999886433
No 186
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=56.81 E-value=8.4 Score=26.78 Aligned_cols=33 Identities=39% Similarity=0.344 Sum_probs=23.5
Q ss_pred eEEEEEEeccchhhHHhhccCCeecCceEEEecC
Q 025931 9 QIAYVTFKDMQGAETAVLLSGATIVDLSVSISLA 42 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~ 42 (246)
..|+|+|+++..++.+ +-.+-.+.+..|.|..+
T Consensus 43 g~afV~f~~~~~a~~~-~~~~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 43 AFAFVTFADDQIAQSL-CGEDLIIKGISVHISNA 75 (88)
T ss_dssp SCCEEECSCHHHHHHT-TTCEEEETTEEEEEECC
T ss_pred CEEEEEECCHHHHHHH-hcCCceeCCEEEEEEec
Confidence 4799999999999753 22233447888888754
No 187
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=55.87 E-value=7.2 Score=27.81 Aligned_cols=31 Identities=42% Similarity=0.607 Sum_probs=23.7
Q ss_pred eEEEEEEeccchhhHHhhccCCeec--CceEEEecC
Q 025931 9 QIAYVTFKDMQGAETAVLLSGATIV--DLSVSISLA 42 (246)
Q Consensus 9 qtA~VTFe~~~Aa~TALLLsGAtL~--d~~V~It~~ 42 (246)
.-|+|+|+++..++ + |+|..+. +..|.|..+
T Consensus 49 GfaFV~F~~~~~A~-~--~~~~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 49 AFAFVTFADDKVAQ-S--LCGEDLIIKGISVHISNA 81 (89)
T ss_dssp SEEEEEESCHHHHH-H--HTTCEEEETTEEEEEEEC
T ss_pred CEEEEEECCHHHHH-H--HcCCCcccCCEEEEEEEc
Confidence 48999999999998 3 4566654 778888654
No 188
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=46.71 E-value=12 Score=30.13 Aligned_cols=34 Identities=18% Similarity=0.283 Sum_probs=29.2
Q ss_pred ceEEEEEEeccc-hhhHHhhccCCeecCceEEEec
Q 025931 8 TQIAYVTFKDMQ-GAETAVLLSGATIVDLSVSISL 41 (246)
Q Consensus 8 sqtA~VTFe~~~-Aa~TALLLsGAtL~d~~V~It~ 41 (246)
.+-|.|.|+|.. |++-+|-|+|-+|.|..|++..
T Consensus 62 H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 62 FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp TTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CCceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 467999999975 6678889999999999999964
No 189
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=45.53 E-value=17 Score=30.54 Aligned_cols=38 Identities=21% Similarity=0.267 Sum_probs=30.1
Q ss_pred ceEEEEEEeccchhhHHhhc--cCCeec---CceEEEecCCCC
Q 025931 8 TQIAYVTFKDMQGAETAVLL--SGATIV---DLSVSISLAPDY 45 (246)
Q Consensus 8 sqtA~VTFe~~~Aa~TALLL--sGAtL~---d~~V~It~~~~~ 45 (246)
...|+|+|.+...+..|+-. +|..+. +.+|.|.+....
T Consensus 137 ~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 137 TGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCE
T ss_pred CcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeecccc
Confidence 45799999999999999965 555555 889999877543
No 190
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=41.44 E-value=20 Score=28.65 Aligned_cols=35 Identities=9% Similarity=0.158 Sum_probs=29.6
Q ss_pred ceEEEEEEeccchhhHHhhccCCeecC-ceEEEecC
Q 025931 8 TQIAYVTFKDMQGAETAVLLSGATIVD-LSVSISLA 42 (246)
Q Consensus 8 sqtA~VTFe~~~Aa~TALLLsGAtL~d-~~V~It~~ 42 (246)
.---+|+|.++..|+-||..||..|.+ --|-|.|+
T Consensus 59 ~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 59 GNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPC 94 (119)
T ss_dssp SSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEEC
T ss_pred CCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEEC
Confidence 345789999999999999999999985 56777776
No 191
>1yo3_A Dynein light chain 1; structural genomics consortium, microtub malaria, SGC, transport protein; 1.65A {Plasmodium falciparum} PDB: 1f3c_A 1f95_A 1f96_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3dvt_A 2pg1_A 3p8m_A 1pwj_A 2xqq_A 3brl_A 1re6_A 1cmi_A 3dvh_A 3dvp_A ...
Probab=30.53 E-value=42 Score=25.71 Aligned_cols=32 Identities=22% Similarity=0.205 Sum_probs=17.2
Q ss_pred HHHHHHHhhhhcCccHHHHHHHh-hhhhhcCcc
Q 025931 90 AVFKAKTFDEKHQFTSTASAKVA-SFDKKIGFS 121 (246)
Q Consensus 90 Ai~KAi~fDekHgiSs~f~a~v~-slD~K~glT 121 (246)
|++.|++.=+++.........|+ +||+|||-+
T Consensus 34 a~~~a~~Al~k~~~ekdiA~~IK~~fDkkyG~~ 66 (102)
T 1yo3_A 34 AIDCANQALQKYNVEKDIAAHIKKEFDRKYDPT 66 (102)
T ss_dssp HHHHHHHHHHHCSSHHHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHhhhcCCC
Confidence 33333333334444445555554 788888754
No 192
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=27.06 E-value=55 Score=25.71 Aligned_cols=33 Identities=12% Similarity=0.116 Sum_probs=24.7
Q ss_pred EEEEEEec-cchhhHHhh-c--cCCeecCceEEEecC
Q 025931 10 IAYVTFKD-MQGAETAVL-L--SGATIVDLSVSISLA 42 (246)
Q Consensus 10 tA~VTFe~-~~Aa~TALL-L--sGAtL~d~~V~It~~ 42 (246)
++||.|++ +.+++.|+- | .|.+|.+..++++..
T Consensus 57 tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL 93 (121)
T 1owx_A 57 EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVL 93 (121)
T ss_dssp EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEEC
T ss_pred EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEEC
Confidence 69999999 556665554 6 488889988888643
No 193
>3rjs_A Dynein light chain motor protein; parasite, LC8, DLC8, TGDLC8, LIG PIN, DLC1, dynll1, transport protein; 1.50A {Toxoplasma gondii} PDB: 1pwj_A 2xqq_A 1re6_A 3p8m_A 3dvt_A 2pg1_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3brl_A 3dvh_A 3dvp_A 1pwk_A 1f3c_A 1f95_A 1f96_A ...
Probab=26.85 E-value=55 Score=24.23 Aligned_cols=33 Identities=27% Similarity=0.223 Sum_probs=19.2
Q ss_pred HHHHHHHHhhhhcCccHHHHHHHh-hhhhhcCcc
Q 025931 89 DAVFKAKTFDEKHQFTSTASAKVA-SFDKKIGFS 121 (246)
Q Consensus 89 dAi~KAi~fDekHgiSs~f~a~v~-slD~K~glT 121 (246)
+|++.|++.=++|++.....+.|+ +||+|||-+
T Consensus 20 ~a~~~a~~al~~~~~ek~iA~~IK~~fD~kyg~~ 53 (89)
T 3rjs_A 20 DAIDCANQALEKYNIEKDIAAFIKKEFDRKHNPT 53 (89)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHHCCcHHHHHHHHHHHHhcccCCC
Confidence 444444444455555555555553 788888854
No 194
>1smz_A Transportan in bicellar solution with [DMPC]/[DHPC]=0.33; transport protein; NMR {Synthetic} SCOP: j.6.1.1
Probab=21.95 E-value=33 Score=20.92 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=16.6
Q ss_pred HHhccccccHHHHHHHHHhhhh
Q 025931 79 MLAKGFILGKDAVFKAKTFDEK 100 (246)
Q Consensus 79 mLAkGYvLgddAi~KAi~fDek 100 (246)
+-+.||.||..+|.--+.|-+|
T Consensus 4 LNSAGYLLGp~~id~h~s~~dK 25 (27)
T 1smz_A 4 LNSAGYLLGKINLKALAALAKK 25 (27)
T ss_dssp HHHHTTTTTTTHHHHHHHHHHH
T ss_pred ccccceeeccccchhhhhhhhh
Confidence 3457999999988877776554
No 195
>4ds1_A Dynein light chain 1, cytoplasmic; dynein light chain fold, peptide binding, nucle structural protein-transport protein complex; 1.85A {Saccharomyces cerevisiae}
Probab=20.94 E-value=82 Score=23.74 Aligned_cols=33 Identities=24% Similarity=0.245 Sum_probs=19.1
Q ss_pred HHHHHHHHhhhhcCccHHHHHHH-hhhhhhcCcc
Q 025931 89 DAVFKAKTFDEKHQFTSTASAKV-ASFDKKIGFS 121 (246)
Q Consensus 89 dAi~KAi~fDekHgiSs~f~a~v-~slD~K~glT 121 (246)
+|++.|++.=++|+........| .+||+|||-+
T Consensus 28 ~a~~~a~~al~~~~~ek~iA~~IK~~fDkkyG~~ 61 (97)
T 4ds1_A 28 DILTISKDALDKYQLERDIAGTVKKQLDVKYGNT 61 (97)
T ss_dssp HHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCccCCC
Confidence 45555555445555544455555 3788888754
Done!