BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>025936
MEFPKSQVLTNPLLSLSTFIHQNCLRLGSELSSRLDDTKRTLSRRLQRPPLSVPPFAFLS
QPKQALAATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFL
AQVRLRRKELRSAAKVVPITLDQVYMLKVEGIAFRFLPDPAQIRNALELKAADVRTGFDG
VPVFQSELLVVKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGVSQHIMVEKHLITFICS
FEEYLE

High Scoring Gene Products

Symbol, full name Information P value
Tic22-IV
translocon at the inner envelope membrane of chloroplasts 22-IV
protein from Arabidopsis thaliana 5.7e-75
Tic22-III
translocon at the inner envelope membrane of chloroplasts 22-III
protein from Arabidopsis thaliana 6.0e-32
slr0924
Slr0924 protein
protein from Synechocystis sp. PCC 6803 substr. Kazusa 6.4e-06

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  025936
        (246 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2119146 - symbol:Tic22-IV "translocon at the i...   756  5.7e-75   1
TAIR|locus:2095213 - symbol:Tic22-III "translocon at the ...   350  6.0e-32   1
UNIPROTKB|Q55386 - symbol:slr0924 "Slr0924 protein" speci...   127  6.4e-06   1


>TAIR|locus:2119146 [details] [associations]
            symbol:Tic22-IV "translocon at the inner envelope
            membrane of chloroplasts 22-IV" species:3702 "Arabidopsis thaliana"
            [GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009706
            "chloroplast inner membrane" evidence=ISS] [GO:0009941 "chloroplast
            envelope" evidence=IDA] [GO:0009536 "plastid" evidence=IDA]
            Pfam:PF04278 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0016020
            GO:GO:0015031 GO:GO:0009941 EMBL:AL035678 EMBL:AL161583
            GO:GO:0031972 eggNOG:NOG13657 HOGENOM:HOG000242260
            InterPro:IPR007378 EMBL:AK118805 EMBL:BT005417 IPI:IPI00528049
            PIR:T05986 RefSeq:NP_001190901.1 RefSeq:NP_195061.1
            UniGene:At.31588 ProteinModelPortal:Q9SZB2 IntAct:Q9SZB2
            STRING:Q9SZB2 PaxDb:Q9SZB2 PRIDE:Q9SZB2 EnsemblPlants:AT4G33350.1
            GeneID:829471 KEGG:ath:AT4G33350 TAIR:At4g33350 InParanoid:Q9SZB2
            OMA:MEMSEKN PhylomeDB:Q9SZB2 ProtClustDB:CLSN2684332
            Genevestigator:Q9SZB2 InterPro:IPR005692 TIGRFAMs:TIGR00995
            Uniprot:Q9SZB2
        Length = 268

 Score = 756 (271.2 bits), Expect = 5.7e-75, P = 5.7e-75
 Identities = 157/231 (67%), Positives = 184/231 (79%)

Query:     5 KSQVLTNPLLSLSTFIHQNCLRLGSELSSRLDDTKR---TLS-RRLQRPPLSVPPFAFLS 60
             +S V  NP LS S+FIH  C R  S+LS+R++DTKR   TL+ RR   P  + PPFA +S
Sbjct:     2 ESSVKPNPFLSFSSFIHHQCTRFSSDLSARIEDTKRFAETLATRRFSLP--TPPPFASVS 59

Query:    61 QPKQAL-AATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAF 119
             Q K      TLS   V+K LAGT+V+TVSN++NEFVLISDP G KSIGLLCFRQEDAEAF
Sbjct:    60 QSKSGTPTTTLSPSLVAKALAGTSVFTVSNTNNEFVLISDPTGGKSIGLLCFRQEDAEAF 119

Query:   120 LAQVRLRRKELRSAAKVVPITLDQVYMLKVEGIAFRFLPDPAQIRNALELKAADVRTGFD 179
             LAQ RLRR+EL++ AKVVPITLDQVY+LKVEGI+FRFLPDP QI+NALELK++  + GFD
Sbjct:   120 LAQARLRRRELKTNAKVVPITLDQVYLLKVEGISFRFLPDPIQIKNALELKSSGNKNGFD 179

Query:   180 GVPVFQSELLVVKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGVSQHIMV 230
             GVPVFQSELLVV+KKN+RYCPVYF KEDIE+ELSK +RASRG    Q IMV
Sbjct:   180 GVPVFQSELLVVRKKNRRYCPVYFSKEDIERELSKYTRASRG---DQQIMV 227


>TAIR|locus:2095213 [details] [associations]
            symbol:Tic22-III "translocon at the inner envelope
            membrane of chloroplasts 22-III" species:3702 "Arabidopsis
            thaliana" [GO:0009507 "chloroplast" evidence=ISM] [GO:0009706
            "chloroplast inner membrane" evidence=ISS] [GO:0009536 "plastid"
            evidence=IDA] Pfam:PF04278 GO:GO:0009536 EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0016020 GO:GO:0015031 EMBL:AP000377
            GO:GO:0031972 IPI:IPI00540745 RefSeq:NP_189013.1 UniGene:At.43959
            ProteinModelPortal:F4J469 PRIDE:F4J469 EnsemblPlants:AT3G23710.1
            GeneID:821952 KEGG:ath:AT3G23710 TAIR:At3g23710 eggNOG:NOG13657
            HOGENOM:HOG000242260 InParanoid:Q9LK46 OMA:PPPWARI
            InterPro:IPR007378 Uniprot:F4J469
        Length = 313

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 88/226 (38%), Positives = 131/226 (57%)

Query:     6 SQVLTNPLLSLSTFIHQNCLRLGSELSSRLDDTKRTLSRRLQR-PPLSVPPFAFLSQ--- 61
             SQ L NPL + +T  + N   + S L+S  D  K+ L  R+ R      P +A +S    
Sbjct:    37 SQTL-NPLFNANT--NNNKPNIFSALNSFRDQAKQALDSRISRFNSGKAPVWARISDDGG 93

Query:    62 --------PKQALAATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQ 113
                     P +     LS+D + + LAG  VY +SNS+ EFVL+S  +  KS+GLL  ++
Sbjct:    94 GARAQVTVPIRGSGKGLSADAIEERLAGVPVYALSNSNEEFVLVSGTSSGKSLGLLFCKE 153

Query:   114 EDAEAFLAQVRLRRKELRS-AAKVVPITLDQVYMLKVEGIAFRFLPDPAQIRNAL-ELKA 171
             EDAE  L +++     +R   +KVV + L +V+ LKV G+AFR +P+  Q++NAL E K 
Sbjct:   154 EDAETLLKEMKSMDPRMRKEGSKVVALALSKVFQLKVNGVAFRLIPESTQVKNALKERKT 213

Query:   172 ADVRTG-FDGVPVFQSELLVVKKKNKRYCPVYFQKEDIEKELSKVS 216
             A +    F GVPVFQS+ L+++ +N  Y PV+F+KED+EK L + S
Sbjct:   214 AGIDDDDFHGVPVFQSKSLILRSENMSYRPVFFRKEDLEKSLIRAS 259


>UNIPROTKB|Q55386 [details] [associations]
            symbol:slr0924 "Slr0924 protein" species:1111708
            "Synechocystis sp. PCC 6803 substr. Kazusa" [GO:0030288 "outer
            membrane-bounded periplasmic space" evidence=IDA] Pfam:PF04278
            GO:GO:0030288 EMBL:BA000022 GenomeReviews:BA000022_GR
            eggNOG:NOG13657 InterPro:IPR007378 InterPro:IPR005692
            TIGRFAMs:TIGR00995 PIR:S75740 RefSeq:NP_442405.1
            RefSeq:YP_005652465.1 IntAct:Q55386 STRING:Q55386 GeneID:12253696
            GeneID:952185 KEGG:syn:slr0924 KEGG:syy:SYNGTS_2512 PATRIC:23842502
            HOGENOM:HOG000035921 OMA:ESREYIR Uniprot:Q55386
        Length = 286

 Score = 127 (49.8 bits), Expect = 6.4e-06, P = 6.4e-06
 Identities = 40/170 (23%), Positives = 88/170 (51%)

Query:    58 FLSQPKQALAATLSSDFVSKTLAGTAVYTVSNSSNE-FVLISDPNGAKSIGLLCFRQEDA 116
             +L    QALA  L ++ V K L G  V+T+ ++     V + + N  K  G+   +QE A
Sbjct:    66 WLGTTLQALA--LPTEEVVKILQGVPVFTIVDAQGAPLVAVGNDN-EKVTGVFISQQE-A 121

Query:   117 EAFLAQVRLRRKELRSAAKVVPITLDQVYML------KVEGIAFRFLPDPAQIRNALELK 170
               FL +++ ++ ++ S   V P++L +V  +      + + + F ++P PAQ++ A ++ 
Sbjct:   122 NGFLQELKKQKPDVGSQVSVQPVSLGEVVKIAQANANQTDPLGFAYVPIPAQVQAAQQMP 181

Query:   171 AADVRTGFDGVPVFQSE------LLVVKKKNKRYCPVYFQKEDIEKELSK 214
              ++ +    GVP+F +        L ++++N++  P + +   I++ + +
Sbjct:   182 NSEYQ---GGVPLFVARGGEDQGYLTIQQENEQIIPFFLEASQIQQMVER 228


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.134   0.374    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      246       246    0.0010  113 3  11 22  0.41    33
                                                     32  0.46    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  569 (61 KB)
  Total size of DFA:  152 KB (2093 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.40u 0.10s 21.50t   Elapsed:  00:00:01
  Total cpu time:  21.40u 0.10s 21.50t   Elapsed:  00:00:01
  Start:  Sat May 11 09:19:53 2013   End:  Sat May 11 09:19:54 2013

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