BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025936
(246 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SZB2|TIC22_ARATH Protein TIC 22, chloroplastic OS=Arabidopsis thaliana GN=TIC22 PE=1
SV=1
Length = 268
Score = 306 bits (785), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 157/231 (67%), Positives = 184/231 (79%), Gaps = 10/231 (4%)
Query: 5 KSQVLTNPLLSLSTFIHQNCLRLGSELSSRLDDTKR---TL-SRRLQRPPLSVPPFAFLS 60
+S V NP LS S+FIH C R S+LS+R++DTKR TL +RR P + PPFA +S
Sbjct: 2 ESSVKPNPFLSFSSFIHHQCTRFSSDLSARIEDTKRFAETLATRRFSLP--TPPPFASVS 59
Query: 61 QPKQAL-AATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAF 119
Q K TLS V+K LAGT+V+TVSN++NEFVLISDP G KSIGLLCFRQEDAEAF
Sbjct: 60 QSKSGTPTTTLSPSLVAKALAGTSVFTVSNTNNEFVLISDPTGGKSIGLLCFRQEDAEAF 119
Query: 120 LAQVRLRRKELRSAAKVVPITLDQVYMLKVEGIAFRFLPDPAQIRNALELKAADVRTGFD 179
LAQ RLRR+EL++ AKVVPITLDQVY+LKVEGI+FRFLPDP QI+NALELK++ + GFD
Sbjct: 120 LAQARLRRRELKTNAKVVPITLDQVYLLKVEGISFRFLPDPIQIKNALELKSSGNKNGFD 179
Query: 180 GVPVFQSELLVVKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGVSQHIMV 230
GVPVFQSELLVV+KKN+RYCPVYF KEDIE+ELSK +RASRG Q IMV
Sbjct: 180 GVPVFQSELLVVRKKNRRYCPVYFSKEDIERELSKYTRASRG---DQQIMV 227
>sp|Q9ZST9|TIC22_PEA Protein TIC 22, chloroplastic OS=Pisum sativum GN=TIC22 PE=1 SV=1
Length = 252
Score = 297 bits (761), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 157/242 (64%), Positives = 183/242 (75%), Gaps = 23/242 (9%)
Query: 5 KSQVLTNPLLSLSTFIHQNCLRLGSELSSRLDDTKRTLSRRLQRPPLSVPPFAFLSQPKQ 64
+SQ NPLLS S FI+ + + L++RL++TKR +Q + P FA
Sbjct: 2 ESQGQWNPLLSFSRFINHHS----NHLATRLEETKRLAGTLIQSHTRTKPAFA------- 50
Query: 65 ALAATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVR 124
ATL+ + V+K+LAGT+VYTVSNS NEFVL+SD GAKSIGLLCFRQEDAEAFLAQVR
Sbjct: 51 ---ATLTPNHVAKSLAGTSVYTVSNSDNEFVLMSDAEGAKSIGLLCFRQEDAEAFLAQVR 107
Query: 125 LRRKELRSAAKVVPITLDQVYMLKVEGIAFRFLPDPAQIRNALELKAADVRTGFDGVPVF 184
R+KE R AKVVPITLDQVYMLKVEGIAFRFLPDP QI+NALEL+AA+ R FDGVPVF
Sbjct: 108 SRKKEFRGGAKVVPITLDQVYMLKVEGIAFRFLPDPVQIKNALELRAAN-RGSFDGVPVF 166
Query: 185 QSELLVVKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGVSQHIMVEKHLITFICSFEEY 244
QS+LLVVKKKNKRYCPVYF KED+E ELSKVSR+S+G GVSQHIMV SFE+
Sbjct: 167 QSDLLVVKKKNKRYCPVYFSKEDLEYELSKVSRSSKGVGVSQHIMV--------GSFEDV 218
Query: 245 LE 246
L+
Sbjct: 219 LK 220
>sp|F4J469|TI22L_ARATH Protein TIC 22-like, chloroplastic OS=Arabidopsis thaliana
GN=TIC22L PE=3 SV=1
Length = 313
Score = 130 bits (328), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 80/203 (39%), Positives = 119/203 (58%), Gaps = 15/203 (7%)
Query: 29 SELSSRLDDTKRTLSRRLQR-PPLSVPPFAFLSQ-----------PKQALAATLSSDFVS 76
S L+S D K+ L R+ R P +A +S P + LS+D +
Sbjct: 57 SALNSFRDQAKQALDSRISRFNSGKAPVWARISDDGGGARAQVTVPIRGSGKGLSADAIE 116
Query: 77 KTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRLRRKELR-SAAK 135
+ LAG VY +SNS+ EFVL+S + KS+GLL ++EDAE L +++ +R +K
Sbjct: 117 ERLAGVPVYALSNSNEEFVLVSGTSSGKSLGLLFCKEEDAETLLKEMKSMDPRMRKEGSK 176
Query: 136 VVPITLDQVYMLKVEGIAFRFLPDPAQIRNAL-ELKAADV-RTGFDGVPVFQSELLVVKK 193
VV + L +V+ LKV G+AFR +P+ Q++NAL E K A + F GVPVFQS+ L+++
Sbjct: 177 VVALALSKVFQLKVNGVAFRLIPESTQVKNALKERKTAGIDDDDFHGVPVFQSKSLILRS 236
Query: 194 KNKRYCPVYFQKEDIEKELSKVS 216
+N Y PV+F+KED+EK L + S
Sbjct: 237 ENMSYRPVFFRKEDLEKSLIRAS 259
>sp|O78449|YCF80_GUITH Uncharacterized protein ycf80 OS=Guillardia theta GN=ycf80 PE=3
SV=1
Length = 282
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 63/167 (37%), Gaps = 39/167 (23%)
Query: 57 AFLSQPKQALAATLSSDFVSKTLAGTAVYTVSNSSNEFVLIS------------------ 98
+ S + TL+ + ++L VYT+ N NE V+ S
Sbjct: 82 SLFSNRRSPYFPTLAQKHILESLKTVPVYTIVNDLNEIVIASPRDLTNFNSFNWVKRFYN 141
Query: 99 ------DPNGAKSIGLLCFRQEDAEAFLAQVRLR--RKELRSAAKVVPITLDQVYMLKVE 150
G +IGL +EDAE +L Q+ L+ R V I+LD Y L
Sbjct: 142 DWFIWEKDEGNVNIGLFFMNREDAELYLHQICLKDPRGVENVGVNVKTISLDTFYKLNRL 201
Query: 151 G---IAFRFLPDPAQIRNALEL----------KAADVRTGFDGVPVF 184
+ F+ + D +I+N L + K + F G+P+F
Sbjct: 202 SPPRLQFKLIADLQEIKNILNVNSNSRVSFHPKQKYDKNWFKGIPIF 248
>sp|P51218|YCF80_PORPU Uncharacterized protein ycf80 OS=Porphyra purpurea GN=ycf80 PE=3
SV=1
Length = 450
Score = 37.4 bits (85), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 44/222 (19%), Positives = 89/222 (40%), Gaps = 41/222 (18%)
Query: 32 SSRLDDTKRTLSRRLQRPPLSVPPFAFLSQ-PKQALAATLSSDFVSKTLAGTAVYTVSNS 90
S +D+ + + + + L P F +++ K + +S+ F+ + L+ + V+ V N
Sbjct: 123 SKDIDNKIILIQQYIWKKGLKSPQFNSIARLNKNVDISNISTKFIMEQLSTSPVFVVKNG 182
Query: 91 SNEFVL----------------------ISDPNGAKSI--GLLCFRQEDAEAFLAQVRLR 126
NE +L P I GL F +DA F V+ +
Sbjct: 183 LNEIILGHPLSRIRRTAFNQIASSLSNLFHQPIATSPISNGLFFFHPDDAIEFKNFVQSK 242
Query: 127 RKEL--RSAAKVVPITLDQVYMLK---VEGIAFRFLPDPAQIRNAL--ELKAADV----- 174
E K+ P+ L Y + I FRF+PD ++ + + +A ++
Sbjct: 243 APEACKDMDIKIQPVGLHVAYKMNRNFSSDIQFRFVPDFKEVGDLIFRHQQAKNLHFHEN 302
Query: 175 ----RTGFDGVPVFQSELLVVKKKNKRYCPVYFQKEDIEKEL 212
+ F G P++ + +++K +N R + F + ++E+
Sbjct: 303 QYYGKNFFQGQPIYMIQPIIIKHRNGRISIIKFTGANDDREV 344
>sp|Q800G5|MXE_DANRE Interferon-induced GTP-binding protein MxE OS=Danio rerio GN=mxe
PE=2 SV=1
Length = 625
Score = 35.0 bits (79), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 79/169 (46%), Gaps = 21/169 (12%)
Query: 63 KQALAATLSSDFVSKTLAGTAVYTVSNSS---NEFVLISDPNGAKSI----GLLCFRQED 115
++ L D V + + T V TV+N + +I G + I GL+ +++
Sbjct: 213 QRTLGILTKPDLVDRGMEDTVVRTVNNEVIPLKKGYMIVKCRGQQDINDKLGLVEALEKE 272
Query: 116 AEAFLAQVRLRRKELRSAAKVVPITLDQVYMLKVEGIAFRFLPDPAQIRNALELK----A 171
F V R L +P+ +++ VE IA + LP Q++N LE+K +
Sbjct: 273 RRFFDENVHFRSL-LEDRKATIPLLAERLTKELVEHIA-KNLP---QLQNQLEMKLEKTS 327
Query: 172 ADVRTGFDGVPVFQSE-----LLVVKKKNKRYCPVYFQKEDIEKELSKV 215
AD+R DGVP+ ++E ++ +++ N V +ED+EK ++V
Sbjct: 328 ADLRGLGDGVPLDKNEKSNFLIMKIRQFNDVLERVQMAEEDVEKPNTRV 376
>sp|A1K581|SYS_AZOSB Serine--tRNA ligase OS=Azoarcus sp. (strain BH72) GN=serS PE=3 SV=1
Length = 430
Score = 31.2 bits (69), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 27/42 (64%)
Query: 103 AKSIGLLCFRQEDAEAFLAQVRLRRKELRSAAKVVPITLDQV 144
+K IG+L + EDA A +A+V EL++ + +P+ L+++
Sbjct: 55 SKQIGILKGKGEDASAVMAEVGQLGDELKACEQALPVVLEKL 96
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,774,764
Number of Sequences: 539616
Number of extensions: 2921187
Number of successful extensions: 8179
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 8168
Number of HSP's gapped (non-prelim): 15
length of query: 246
length of database: 191,569,459
effective HSP length: 114
effective length of query: 132
effective length of database: 130,053,235
effective search space: 17167027020
effective search space used: 17167027020
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)