BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025937
(246 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TLX|A Chain A, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|B Chain B, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|C Chain C, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|D Chain D, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
Length = 243
Score = 257 bits (656), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 118/239 (49%), Positives = 159/239 (66%)
Query: 8 NLEDVPSVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDML 67
NLE+ ++DL+ EL RR C SKPD R I +G PGSGKGTQS +K +C CHL+TGD+L
Sbjct: 5 NLENFSTIDLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLL 64
Query: 68 RAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQK 127
R A KT LG+K K +++G+LV D +V+ ++DE +K P C+KGFILDG+PR QA+
Sbjct: 65 REAAEKKTELGLKIKNIINEGKLVDDQMVLSLVDEKLKTPQCKKGFILDGYPRNVKQAED 124
Query: 128 LDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGE 187
L+++L+K K+D V F + D VL RI+GR IH SGR YH F PPKVP DDVT E
Sbjct: 125 LNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRLIHKPSGRIYHKIFNPPKVPFRDDVTNE 184
Query: 188 PLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA 246
PLIQR+DD VLK RL F +T P+I YY K ++ L A +P ++ ++ + +
Sbjct: 185 PLIQREDDNEDVLKKRLTVFKSETSPLISYYKNKNLLINLDATQPANDLEKKISQHIDG 243
>pdb|1AK2|A Chain A, Adenylate Kinase Isoenzyme-2
pdb|2AK2|A Chain A, Adenylate Kinase Isoenzyme-2
Length = 233
Score = 249 bits (637), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 113/212 (53%), Positives = 158/212 (74%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
R +L+GPPG+GKGTQ+P + +C+CHLATGDMLRA VA+ + LG K K MD G+LVSD
Sbjct: 18 RAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSD 77
Query: 94 DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLE 153
++V+ +I++ ++ P C+ GF+LDGFPRT QA+ LD+++EK+ +K+D V+ F+I D++L
Sbjct: 78 EMVLELIEKNLETPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLI 137
Query: 154 ERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEP 213
RITGR IHP SGR+YH +F PPK P DD+TGEPLI+R DD LK RLEA+H QT P
Sbjct: 138 RRITGRLIHPQSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNKKALKIRLEAYHTQTTP 197
Query: 214 VIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 245
+++YYSK+GI + + A + P V + + A S
Sbjct: 198 LVEYYSKRGIHSAIDASQTPDVVFASILAAFS 229
>pdb|2C9Y|A Chain A, Structure Of Human Adenylate Kinase 2
Length = 242
Score = 249 bits (635), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 113/212 (53%), Positives = 158/212 (74%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
R +L+GPPG+GKGTQ+P + + +C+CHLATGDMLRA VA+ + LG K K MD G+LVSD
Sbjct: 18 RAVLLGPPGAGKGTQAPRLAENFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSD 77
Query: 94 DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLE 153
++VV +I++ ++ P C+ GF+LDGFPRT QA+ LD+++EK+ +K+D V+ F+I D++L
Sbjct: 78 EMVVELIEKNLETPLCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLI 137
Query: 154 ERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEP 213
RITGR IHP SGR+YH +F PPK P DD+TGEPLI+R DD LK RL+A+H QT P
Sbjct: 138 RRITGRLIHPKSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNEKALKIRLQAYHTQTTP 197
Query: 214 VIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 245
+I+YY K+GI + + A + P V + + A S
Sbjct: 198 LIEYYRKRGIHSAIDASQTPDVVFASILAAFS 229
>pdb|1AKY|A Chain A, High-Resolution Structures Of Adenylate Kinase From Yeast
Ligated With Inhibitor Ap5a, Showing The Pathway Of
Phosphoryl Transfer
pdb|2AKY|A Chain A, High-Resolution Structures Of Adenylate Kinase From Yeast
Ligated With Inhibitor Ap5a, Showing The Pathway Of
Phosphoryl Transfer
Length = 220
Score = 244 bits (624), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 114/213 (53%), Positives = 155/213 (72%), Gaps = 1/213 (0%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
R++L+GPPG+GKGTQ+P +++ + HLATGDMLR+ +A T LG++AK+ MD+G LVSD
Sbjct: 6 RMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSD 65
Query: 94 DLVVGII-DEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVL 152
D++V +I DE P+C+ GFILDGFPRT QA+KLD+ML++QG ++K + +DD +L
Sbjct: 66 DIMVNMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELL 125
Query: 153 EERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTE 212
RITGR IHP+SGR+YH F PPK DDVTGE L+QR DD A LK RL A+H QTE
Sbjct: 126 VARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQRSDDNADALKKRLAAYHAQTE 185
Query: 213 PVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 245
P++D+Y K GI A + A +PP V +++ L
Sbjct: 186 PIVDFYKKTGIWAGVDASQPPATVWADILNKLG 218
>pdb|3AKY|A Chain A, Stability, Activity And Structure Of Adenylate Kinase
Mutants
Length = 220
Score = 243 bits (621), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 114/213 (53%), Positives = 154/213 (72%), Gaps = 1/213 (0%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
R++L+GPPG+GKGTQ+P +++ + HLATGDMLR+ +A T LG++AK+ MD+G LVSD
Sbjct: 6 RMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSD 65
Query: 94 DLVVGII-DEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVL 152
D++V +I DE P+C+ GFILDGFPRT QA+KLD+ML++QG ++K + +DD +L
Sbjct: 66 DIMVNMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELL 125
Query: 153 EERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTE 212
RITGR IHP+SGR+YH F PPK DDVTGE L+QR DD A LK RL A+H QTE
Sbjct: 126 VARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQRSDDNADALKKRLAAYHAQTE 185
Query: 213 PVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 245
P++D+Y K GI A + A +PP V ++ L
Sbjct: 186 PIVDFYKKTGIWAGVDASQPPATVWADFLNKLG 218
>pdb|1DVR|A Chain A, Structure Of A Mutant Adenylate Kinase Ligated With An
Atp- Analogue Showing Domain Closure Over Atp
pdb|1DVR|B Chain B, Structure Of A Mutant Adenylate Kinase Ligated With An
Atp- Analogue Showing Domain Closure Over Atp
Length = 220
Score = 237 bits (605), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 112/213 (52%), Positives = 153/213 (71%), Gaps = 1/213 (0%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
R++L+GPPG+GKGTQ+P +++ + HLATGDMLR+ +A T LG++AK+ MD+G LVSD
Sbjct: 6 RMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSD 65
Query: 94 DLVVGII-DEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVL 152
D++V +I DE P+C+ GFIL GFPRT QA+KLD+ML++QG ++K + +DD +L
Sbjct: 66 DIMVNMIKDELTNNPACKNGFILVGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELL 125
Query: 153 EERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTE 212
RITGR IHP+SGR+YH F PPK DDVTGE L+Q DD A LK RL A+H QTE
Sbjct: 126 VARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQISDDNADALKKRLAAYHAQTE 185
Query: 213 PVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 245
P++D+Y K GI A + A +PP V +++ L
Sbjct: 186 PIVDFYKKTGIWAGVDASQPPATVWADILNKLG 218
>pdb|3BE4|A Chain A, Crystal Structure Of Cryptosporidium Parvum Adenylate
Kinase Cgd5_3360
Length = 217
Score = 230 bits (587), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 106/211 (50%), Positives = 147/211 (69%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
LIL+G PGSGKGTQ IK EY L HL+TGDMLR A+ T +G++AK ++ G V D
Sbjct: 7 NLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGD 66
Query: 94 DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLE 153
++V+G++ E C GF+LDGFPRT QA+ L ++L + G + V+ F IDD+ +
Sbjct: 67 EIVLGLVKEKFDLGVCVNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEII 126
Query: 154 ERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEP 213
ERI+GR HP+SGR YH K+ PPK PG+DDVTGEPL+ R DD A +K RL+ FHKQT P
Sbjct: 127 ERISGRCTHPASGRIYHVKYNPPKQPGIDDVTGEPLVWRDDDNAEAVKVRLDVFHKQTAP 186
Query: 214 VIDYYSKKGIVAQLHAEKPPQEVTSEVQKAL 244
++ +Y GI+ +++A+ PP+EVT +++K L
Sbjct: 187 LVKFYEDLGILKRVNAKLPPKEVTEQIKKIL 217
>pdb|3FB4|A Chain A, Crystal Structure Of Adenylate Kinase From Marinibacillus
Marinus
Length = 216
Score = 204 bits (519), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 97/213 (45%), Positives = 141/213 (66%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
++L+G PG+GKGTQ+ I ++Y + H++TGDM RAA+ T LG+KAK MD+G LV D
Sbjct: 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPD 61
Query: 94 DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLE 153
++ +GI+ E + K CQKGF+LDGFPRT QA LD +L GKK+D VLN ++ L
Sbjct: 62 EVTIGIVHERLSKDDCQKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELM 121
Query: 154 ERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEP 213
+R+TGRWI + G TYHT F PP V G+ D G L QR DD +K+RL+ KQT+P
Sbjct: 122 KRLTGRWICKTCGATYHTIFNPPAVEGICDKDGGELYQRIDDKPETVKNRLDVNMKQTQP 181
Query: 214 VIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA 246
++D+YS+KG++ + ++ ++V ++ L
Sbjct: 182 LLDFYSQKGVLKDIDGQQDIKKVFVDINDLLGG 214
>pdb|2EU8|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199r)
pdb|2EU8|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199r)
Length = 216
Score = 201 bits (510), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 101/213 (47%), Positives = 146/213 (68%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
L+L+G PG+GKGTQ I ++Y + H++TGDM RAA+ +TPLG++AK +DKGELV D
Sbjct: 2 NLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPD 61
Query: 94 DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLE 153
++ +GI+ E + K C++GF+LDGFPRT QA+ L+E+LE+ GK +D V+N +D VL
Sbjct: 62 EVTIGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLM 121
Query: 154 ERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEP 213
ER+TGR I G TYH F PPK PG+ D G L QR DD + RLE KQT+P
Sbjct: 122 ERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQP 181
Query: 214 VIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA 246
++D+YS+KG +A ++ ++ Q+V ++V+ L
Sbjct: 182 LLDFYSEKGYLANVNGQRDIQDVYADVKDLLGG 214
>pdb|2RGX|A Chain A, Crystal Structure Of Adenylate Kinase From Aquifex
Aeolicus In Complex With Ap5a
pdb|2RH5|A Chain A, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|C Chain C, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|B Chain B, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|3SR0|A Chain A, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
pdb|3SR0|B Chain B, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
Length = 206
Score = 200 bits (509), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 104/211 (49%), Positives = 140/211 (66%), Gaps = 10/211 (4%)
Query: 35 LILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD 94
L+ +GPPG+GKGTQ+ + E H++TGD+LR AV TPLG KAKE M++GELV DD
Sbjct: 3 LVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDD 62
Query: 95 LVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEE 154
L++ +I+E K I DGFPRT QA+ LDEMLEK+G KVD VL F + D V+ E
Sbjct: 63 LIIALIEEVFPK---HGNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIE 119
Query: 155 RITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPV 214
R++GR I+P +G YH K+ PP PGV +IQR+DD V+K RLE + +QT P+
Sbjct: 120 RLSGRRINPETGEVYHVKYNPPP-PGVK------VIQREDDKPEVIKKRLEVYREQTAPL 172
Query: 215 IDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 245
I+YY KKGI+ + A KP +EV +V + +
Sbjct: 173 IEYYKKKGILRIIDASKPVEEVYRQVLEVIG 203
>pdb|2QAJ|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199rG213E)
pdb|2QAJ|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199rG213E)
Length = 217
Score = 200 bits (509), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 101/213 (47%), Positives = 146/213 (68%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
L+L+G PG+GKGTQ I ++Y + H++TGDM RAA+ +TPLG++AK +DKGELV D
Sbjct: 2 NLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPD 61
Query: 94 DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLE 153
++ +GI+ E + K C++GF+LDGFPRT QA+ L+E+LE+ GK +D V+N +D VL
Sbjct: 62 EVTIGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLM 121
Query: 154 ERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEP 213
ER+TGR I G TYH F PPK PG+ D G L QR DD + RLE KQT+P
Sbjct: 122 ERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQP 181
Query: 214 VIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA 246
++D+YS+KG +A ++ ++ Q+V ++V+ L
Sbjct: 182 LLDFYSEKGYLANVNGQRDIQDVYADVKDLLEG 214
>pdb|2P3S|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (G214rQ199R)
Length = 217
Score = 200 bits (509), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 101/212 (47%), Positives = 146/212 (68%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
L+L+G PG+GKGTQ I ++Y + H++TGDM RAA+ +TPLG++AK +DKGELV D
Sbjct: 2 NLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPD 61
Query: 94 DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLE 153
++ +GI+ E + K C++GF+LDGFPRT QA+ L+E+LE+ GK +D V+N +D VL
Sbjct: 62 EVTIGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLM 121
Query: 154 ERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEP 213
ER+TGR I G TYH F PPK PG+ D G L QR DD + RLE KQT+P
Sbjct: 122 ERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQP 181
Query: 214 VIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 245
++D+YS+KG +A ++ ++ Q+V ++V+ L
Sbjct: 182 LLDFYSEKGYLANVNGQRDIQDVYADVKDLLG 213
>pdb|1P3J|A Chain A, Adenylate Kinase From Bacillus Subtilis
Length = 217
Score = 200 bits (508), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 101/213 (47%), Positives = 146/213 (68%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
L+L+G PG+GKGTQ I ++Y + H++TGDM RAA+ +TPLG++AK +DKGELV D
Sbjct: 2 NLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPD 61
Query: 94 DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLE 153
++ +GI+ E + K C++GF+LDGFPRT QA+ L+E+LE+ GK +D V+N +D VL
Sbjct: 62 EVTIGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLM 121
Query: 154 ERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEP 213
ER+TGR I G TYH F PPK PG+ D G L QR DD + RLE KQT+P
Sbjct: 122 ERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQP 181
Query: 214 VIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA 246
++D+YS+KG +A ++ ++ Q+V ++V+ L
Sbjct: 182 LLDFYSEKGYLANVNGQQDIQDVYADVKDLLGG 214
>pdb|1ZIN|A Chain A, Adenylate Kinase With Bound Ap5a
pdb|1ZIO|A Chain A, Phosphotransferase
pdb|1ZIP|A Chain A, Bacillus Stearothermophilus Adenylate Kinase
Length = 217
Score = 199 bits (505), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 95/212 (44%), Positives = 141/212 (66%)
Query: 35 LILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD 94
L+L+G PG+GKGTQ+ I Y + H++TGDM RAA+ TPLG++AK+ MD+G+LV D+
Sbjct: 3 LVLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDE 62
Query: 95 LVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEE 154
+ +GI+ E + K CQ GF+LDGFPRT QA+ L+ ML G+K+D V++ + VL E
Sbjct: 63 VTIGIVRERLSKDDCQNGFLLDGFPRTVAQAEALETMLADIGRKLDYVIHIDVRQDVLME 122
Query: 155 RITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPV 214
R+TGR I + G TYH F PP PGV D G L QR DD A + +RLE KQ +P+
Sbjct: 123 RLTGRRICRNCGATYHLIFHPPAKPGVCDKCGGELYQRADDNEATVANRLEVNMKQMKPL 182
Query: 215 IDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA 246
+D+Y +KG + ++ E+ ++V +++++ L
Sbjct: 183 VDFYEQKGYLRNINGEQDMEKVFADIRELLGG 214
>pdb|2ORI|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (A193vQ199R)
pdb|2ORI|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (A193vQ199R)
Length = 216
Score = 199 bits (505), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 100/213 (46%), Positives = 145/213 (68%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
L+L+G PG+GKGTQ I ++Y + H++TGDM RAA+ +TPLG++AK +DKGELV D
Sbjct: 2 NLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPD 61
Query: 94 DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLE 153
++ +GI+ E + K C++GF+LDGFPRT QA+ L+E+LE+ GK +D V+N +D VL
Sbjct: 62 EVTIGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLM 121
Query: 154 ERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEP 213
ER+TGR I G TYH F PPK PG+ D G L QR DD + RLE KQT+P
Sbjct: 122 ERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQP 181
Query: 214 VIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA 246
++D+YS+KG + ++ ++ Q+V ++V+ L
Sbjct: 182 LLDFYSEKGYLVNVNGQRDIQDVYADVKDLLGG 214
>pdb|2OO7|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (T179iQ199R)
pdb|2OO7|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (T179iQ199R)
Length = 217
Score = 198 bits (504), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 100/213 (46%), Positives = 145/213 (68%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
L+L+G PG+GKGTQ I ++Y + H++TGDM RAA+ +TPLG++AK +DKGELV D
Sbjct: 2 NLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPD 61
Query: 94 DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLE 153
++ +GI+ E + K C++GF+LDGFPRT QA+ L+E+LE+ GK +D V+N +D VL
Sbjct: 62 EVTIGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLM 121
Query: 154 ERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEP 213
ER+TGR I G TYH F PPK PG+ D G L QR DD + RLE KQ +P
Sbjct: 122 ERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQIQP 181
Query: 214 VIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA 246
++D+YS+KG +A ++ ++ Q+V ++V+ L
Sbjct: 182 LLDFYSEKGYLANVNGQRDIQDVYADVKDLLGG 214
>pdb|2OSB|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (q16l/q199r/)
pdb|2OSB|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (q16l/q199r/)
Length = 216
Score = 197 bits (502), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 100/213 (46%), Positives = 145/213 (68%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
L+L+G PG+GKGT I ++Y + H++TGDM RAA+ +TPLG++AK +DKGELV D
Sbjct: 2 NLVLMGLPGAGKGTLGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPD 61
Query: 94 DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLE 153
++ +GI+ E + K C++GF+LDGFPRT QA+ L+E+LE+ GK +D V+N +D VL
Sbjct: 62 EVTIGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLM 121
Query: 154 ERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEP 213
ER+TGR I G TYH F PPK PG+ D G L QR DD + RLE KQT+P
Sbjct: 122 ERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQP 181
Query: 214 VIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA 246
++D+YS+KG +A ++ ++ Q+V ++V+ L
Sbjct: 182 LLDFYSEKGYLANVNGQRDIQDVYADVKDLLGG 214
>pdb|1AKE|A Chain A, Structure Of The Complex Between Adenylate Kinase From
Escherichia Coli And The Inhibitor Ap5a Refined At 1.9
Angstroms Resolution: A Model For A Catalytic Transition
State
pdb|1AKE|B Chain B, Structure Of The Complex Between Adenylate Kinase From
Escherichia Coli And The Inhibitor Ap5a Refined At 1.9
Angstroms Resolution: A Model For A Catalytic Transition
State
pdb|1ANK|A Chain A, The Closed Conformation Of A Highly Flexible Protein: The
Structure Of E. Cloi Adenylate Kinase With Bound Amp And
Amppnp
pdb|1ANK|B Chain B, The Closed Conformation Of A Highly Flexible Protein: The
Structure Of E. Cloi Adenylate Kinase With Bound Amp And
Amppnp
pdb|4AKE|A Chain A, Adenylate Kinase
pdb|4AKE|B Chain B, Adenylate Kinase
pdb|2ECK|A Chain A, Structure Of Phosphotransferase
pdb|2ECK|B Chain B, Structure Of Phosphotransferase
pdb|3HPQ|A Chain A, Crystal Structure Of Wild-Type Adenylate Kinase From E.
Coli, In Complex With Ap5a
pdb|3HPQ|B Chain B, Crystal Structure Of Wild-Type Adenylate Kinase From E.
Coli, In Complex With Ap5a
Length = 214
Score = 196 bits (499), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 100/217 (46%), Positives = 141/217 (64%), Gaps = 9/217 (4%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
R+IL+G PG+GKGTQ+ I ++Y + ++TGDMLRAAV + + LG +AK+ MD G+LV+D
Sbjct: 2 RIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTD 61
Query: 94 DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLE 153
+LV+ ++ E + + C+ GF+LDGFPRT QA + E G VD VL F + D ++
Sbjct: 62 ELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKE----AGINVDYVLEFDVPDELIV 117
Query: 154 ERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEP 213
+RI GR +H SGR YH KF PPKV G DDVTGE L RKDD ++ RL +H+ T P
Sbjct: 118 DRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAP 177
Query: 214 VIDYYSKKG-----IVAQLHAEKPPQEVTSEVQKALS 245
+I YYSK+ A++ KP EV ++++K L
Sbjct: 178 LIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKILG 214
>pdb|3GMT|A Chain A, Crystal Structure Of Adenylate Kinase From Burkholderia
Pseu
pdb|3GMT|B Chain B, Crystal Structure Of Adenylate Kinase From Burkholderia
Pseu
Length = 230
Score = 194 bits (492), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 93/186 (50%), Positives = 126/186 (67%), Gaps = 4/186 (2%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
RLIL+G PG+GKGTQ+ IK+++ + ++TGD LRAAV A TPLG++AK D+G+LV D
Sbjct: 10 RLILLGAPGAGKGTQANFIKEKFGIPQISTGDXLRAAVKAGTPLGVEAKTYXDEGKLVPD 69
Query: 94 DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLE 153
L++G++ E +K+ C G++ DGFPRT QA E G +D VL + + +
Sbjct: 70 SLIIGLVKERLKEADCANGYLFDGFPRTIAQADAXKEA----GVAIDYVLEIDVPFSEII 125
Query: 154 ERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEP 213
ER +GR HP+SGRTYH KF PPKV G DDVTGEPL+QR DD +K RL+ + QT+P
Sbjct: 126 ERXSGRRTHPASGRTYHVKFNPPKVEGKDDVTGEPLVQRDDDKEETVKKRLDVYEAQTKP 185
Query: 214 VIDYYS 219
+I YY
Sbjct: 186 LITYYG 191
>pdb|3HPR|A Chain A, Crystal Structure Of V148g Adenylate Kinase From E. Coli,
In Complex With Ap5a
pdb|3HPR|B Chain B, Crystal Structure Of V148g Adenylate Kinase From E. Coli,
In Complex With Ap5a
Length = 214
Score = 194 bits (492), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 99/217 (45%), Positives = 140/217 (64%), Gaps = 9/217 (4%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
R+IL+G PG+GKGTQ+ I ++Y + ++TGDMLRAAV + + LG +AK+ MD G+LV+D
Sbjct: 2 RIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTD 61
Query: 94 DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLE 153
+LV+ ++ E + + C+ GF+LDGFPRT QA + E G VD VL F + D ++
Sbjct: 62 ELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEA----GINVDYVLEFDVPDELIV 117
Query: 154 ERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEP 213
+RI GR +H SGR YH KF PPKV G DD TGE L RKDD ++ RL +H+ T P
Sbjct: 118 DRIVGRRVHAPSGRVYHVKFNPPKVEGKDDGTGEELTTRKDDQEETVRKRLVEYHQMTAP 177
Query: 214 VIDYYSKKG-----IVAQLHAEKPPQEVTSEVQKALS 245
+I YYSK+ A++ KP EV ++++K L
Sbjct: 178 LIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKILG 214
>pdb|3DL0|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse3
pdb|3DL0|B Chain B, Crystal Structure Of Adenylate Kinase Variant Aklse3
Length = 216
Score = 193 bits (491), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 98/213 (46%), Positives = 143/213 (67%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
L+L+G PG+GKGTQ I ++Y + H++TGDM RAA+ +TPLG++AK +DKGELV D
Sbjct: 2 NLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPD 61
Query: 94 DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLE 153
++ +GI+ E + K C++GF+LDGFPRT QA+ L+E+LE+ GK +D V+N +D VL
Sbjct: 62 EVTIGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLM 121
Query: 154 ERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEP 213
ER+TGR I G TYH F PPK PG+ D G L QR DD + RLE KQT P
Sbjct: 122 ERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVTKRLEVNMKQTAP 181
Query: 214 VIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA 246
++D+Y +KG + ++ ++ Q+V ++++ L
Sbjct: 182 LLDFYDEKGYLVNVNGQQDIQDVYADLKVLLGG 214
>pdb|1E4V|A Chain A, Mutant G10v Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
pdb|1E4V|B Chain B, Mutant G10v Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
Length = 214
Score = 193 bits (490), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 99/217 (45%), Positives = 140/217 (64%), Gaps = 9/217 (4%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
R+IL+G P +GKGTQ+ I ++Y + ++TGDMLRAAV + + LG +AK+ MD G+LV+D
Sbjct: 2 RIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTD 61
Query: 94 DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLE 153
+LV+ ++ E + + C+ GF+LDGFPRT QA + E G VD VL F + D ++
Sbjct: 62 ELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKE----AGINVDYVLEFDVPDELIV 117
Query: 154 ERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEP 213
+RI GR +H SGR YH KF PPKV G DDVTGE L RKDD ++ RL +H+ T P
Sbjct: 118 DRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAP 177
Query: 214 VIDYYSKKG-----IVAQLHAEKPPQEVTSEVQKALS 245
+I YYSK+ A++ KP EV ++++K L
Sbjct: 178 LIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKILG 214
>pdb|1E4Y|A Chain A, Mutant P9l Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
pdb|1E4Y|B Chain B, Mutant P9l Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
Length = 214
Score = 189 bits (480), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 98/217 (45%), Positives = 139/217 (64%), Gaps = 9/217 (4%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
R+IL+G +GKGTQ+ I ++Y + ++TGDMLRAAV + + LG +AK+ MD G+LV+D
Sbjct: 2 RIILLGALVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTD 61
Query: 94 DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLE 153
+LV+ ++ E + + C+ GF+LDGFPRT QA + E G VD VL F + D ++
Sbjct: 62 ELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKE----AGINVDYVLEFDVPDELIV 117
Query: 154 ERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEP 213
+RI GR +H SGR YH KF PPKV G DDVTGE L RKDD ++ RL +H+ T P
Sbjct: 118 DRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAP 177
Query: 214 VIDYYSKKG-----IVAQLHAEKPPQEVTSEVQKALS 245
+I YYSK+ A++ KP EV ++++K L
Sbjct: 178 LIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKILG 214
>pdb|3DKV|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse1
Length = 217
Score = 186 bits (472), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 94/213 (44%), Positives = 141/213 (66%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
++L+G PG+GKGTQ+ I ++Y + H++TGDM RAA+ +TPLG++AK +DKGELV D
Sbjct: 2 NIVLMGLPGAGKGTQAERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPD 61
Query: 94 DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLE 153
++ +GI+ E + K C++GF+LDGFPRT QA+ L+E+LE+ G+ +D V+N +D L
Sbjct: 62 EVTIGIVRERLSKSDCERGFLLDGFPRTVAQAEALEEILEEMGRPIDYVINIQVDKEELM 121
Query: 154 ERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEP 213
ER+TGR I G TYH F PPK PG+ D G L QR DD + RLE KQT P
Sbjct: 122 ERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVTKRLEVNMKQTAP 181
Query: 214 VIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA 246
++ +Y K ++ ++ ++ Q+V ++V+ L
Sbjct: 182 LLAFYDSKEVLVNVNGQQDIQDVFADVKVILGG 214
>pdb|1S3G|A Chain A, Crystal Structure Of Adenylate Kinase From Bacillus
Globisporus
Length = 217
Score = 177 bits (449), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 87/213 (40%), Positives = 130/213 (61%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
++L+G PG+GKGTQ+ I ++Y H++TGDM RAA+ T LG+KAK MD+G LV D
Sbjct: 2 NIVLMGLPGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVPD 61
Query: 94 DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLE 153
++ +GI+ E + K C GF+LDGFPRT QA+ LD++L G+K++ VLN ++ L
Sbjct: 62 EVTIGIVRERLSKSDCDNGFLLDGFPRTVPQAEALDQLLADMGRKIEHVLNIQVEKEELI 121
Query: 154 ERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEP 213
R+TGR I G +YH F PP+V G D G L QR DD + +RLE QT P
Sbjct: 122 ARLTGRRICKVCGTSYHLLFNPPQVEGKCDKDGGELYQRADDNPDTVTNRLEVNMNQTAP 181
Query: 214 VIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA 246
++ +Y K ++ ++ +K ++V ++ L
Sbjct: 182 LLAFYDSKEVLVNINGQKDIKDVFKDLDVILQG 214
>pdb|2AK3|A Chain A, The Three-Dimensional Structure Of The Complex Between
Mitochondrial Matrix Adenylate Kinase And Its Substrate
Amp At 1.85 Angstroms Resolution
pdb|2AK3|B Chain B, The Three-Dimensional Structure Of The Complex Between
Mitochondrial Matrix Adenylate Kinase And Its Substrate
Amp At 1.85 Angstroms Resolution
Length = 226
Score = 177 bits (448), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 84/191 (43%), Positives = 127/191 (66%), Gaps = 6/191 (3%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
R ++G PGSGKGT S I + L HL++GD+LR + T +G+ AK +D+G+L+ D
Sbjct: 8 RAAIMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIPD 67
Query: 94 DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLE 153
D++ ++ +K Q ++LDGFPRT QA+ LD + ++D V+N + V++
Sbjct: 68 DVMTRLVLHELKN-LTQYNWLLDGFPRTLPQAEALD-----RAYQIDTVINLNVPFEVIK 121
Query: 154 ERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEP 213
+R+T RWIHP SGR Y+ +F PPK G+DD+TGEPL+QR+DD + RL+A+ QTEP
Sbjct: 122 QRLTARWIHPGSGRVYNIEFNPPKTMGIDDLTGEPLVQREDDRPETVVKRLKAYEAQTEP 181
Query: 214 VIDYYSKKGIV 224
V++YY KKG++
Sbjct: 182 VLEYYRKKGVL 192
>pdb|1ZD8|A Chain A, Structure Of Human Adenylate Kinase 3 Like 1
Length = 227
Score = 176 bits (446), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 84/191 (43%), Positives = 128/191 (67%), Gaps = 6/191 (3%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
R +++G PGSGKGT S I + L HL++GD+LR + T +G+ AK +D+G+L+ D
Sbjct: 9 RAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPD 68
Query: 94 DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLE 153
D++ + +K Q ++LDGFPRT QA+ LD + ++D V+N + V++
Sbjct: 69 DVMTRLALHELKN-LTQYSWLLDGFPRTLPQAEALD-----RAYQIDTVINLNVPFEVIK 122
Query: 154 ERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEP 213
+R+T RWIHP+SGR Y+ +F PPK G+DD+TGEPLIQR+DD + RL+A+ QT+P
Sbjct: 123 QRLTARWIHPASGRVYNIEFNPPKTVGIDDLTGEPLIQREDDKPETVIKRLKAYEDQTKP 182
Query: 214 VIDYYSKKGIV 224
V++YY KKG++
Sbjct: 183 VLEYYQKKGVL 193
>pdb|2AR7|A Chain A, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2AR7|B Chain B, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2BBW|A Chain A, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
pdb|2BBW|B Chain B, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
Length = 246
Score = 159 bits (403), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 87/213 (40%), Positives = 128/213 (60%), Gaps = 7/213 (3%)
Query: 15 VDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAK 74
VDL TE L ASK R +++GPPGSGKGT I + L HL++G LR + A
Sbjct: 11 VDLGTENLYFQSMASKL-LRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS 69
Query: 75 TPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEK 134
T +G AK+ ++K LV D ++ ++ ++ Q ++LDGFPRT QA+ LD++ E
Sbjct: 70 TEVGEMAKQYIEKSLLVPDHVITRLMMSELENRRGQH-WLLDGFPRTLGQAEALDKICE- 127
Query: 135 QGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKD 194
VD V++ I L++R++ RWIHP SGR Y+ F PP V G+DDVTGEPL+Q++D
Sbjct: 128 ----VDLVISLNIPFETLKDRLSRRWIHPPSGRVYNLDFNPPHVHGIDDVTGEPLVQQED 183
Query: 195 DTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQL 227
D + +RL + +PVI+ Y +G++ Q
Sbjct: 184 DKPEAVAARLRQYKDVAKPVIELYKSRGVLHQF 216
>pdb|3NDP|A Chain A, Crystal Structure Of Human Ak4(L171p)
pdb|3NDP|B Chain B, Crystal Structure Of Human Ak4(L171p)
Length = 231
Score = 151 bits (382), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 77/194 (39%), Positives = 118/194 (60%), Gaps = 6/194 (3%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
R +++GPPGSGKGT I + L HL++G LR + A T +G AK+ ++K LV D
Sbjct: 7 RAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPD 66
Query: 94 DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLE 153
++ ++ ++ Q ++LDGFPRT QA+ LD++ E VD V++ I L+
Sbjct: 67 HVITRLMMSELENRRGQH-WLLDGFPRTLGQAEALDKICE-----VDLVISLNIPFETLK 120
Query: 154 ERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEP 213
+R++ RWIHP SGR Y+ F PP V G+DDVTGEPL+Q++DD + +R + +P
Sbjct: 121 DRLSRRWIHPPSGRVYNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARPRQYKDVAKP 180
Query: 214 VIDYYSKKGIVAQL 227
VI+ Y +G++ Q
Sbjct: 181 VIELYKSRGVLHQF 194
>pdb|1ZAK|A Chain A, Adenylate Kinase From Maize In Complex With The Inhibitor
P1,P5-Bis(Adenosine-5'-)pentaphosphate (Ap5a)
pdb|1ZAK|B Chain B, Adenylate Kinase From Maize In Complex With The Inhibitor
P1,P5-Bis(Adenosine-5'-)pentaphosphate (Ap5a)
Length = 222
Score = 140 bits (354), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 76/214 (35%), Positives = 131/214 (61%), Gaps = 11/214 (5%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
++++ G P SGKGTQ +IK +Y L H++ GD+LRA +AA + G +AKE M+KG+LV D
Sbjct: 7 KVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPD 66
Query: 94 DLVVGIIDEAMKKPSCQK-GFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVL 152
++VV ++ E +++P Q+ G++LDG+PR+ QA L E LE + D + + D +L
Sbjct: 67 EIVVNMVKERLRQPDAQENGWLLDGYPRSYSQAMAL-ETLE---IRPDTFILLDVPDELL 122
Query: 153 EERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTE 212
ER+ GR + P +G+ YH K++PP+ ++ L QR DDT +K RLE +++ E
Sbjct: 123 VERVVGRRLDPVTGKIYHLKYSPPE----NEEIASRLTQRFDDTEEKVKLRLETYYQNIE 178
Query: 213 PVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA 246
++ Y + I+ ++ + V +++ + L +
Sbjct: 179 SLLSTY--ENIIVKVQGDATVDAVFAKIDELLGS 210
>pdb|1P4S|A Chain A, Solution Structure Of Mycobacterium Tuberculosis Adenylate
Kinase
Length = 181
Score = 125 bits (313), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 103/185 (55%), Gaps = 31/185 (16%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
R++L+GPPG+GKGTQ+ + ++ + ++TG++ R + T LG++AK +D G+LV
Sbjct: 2 RVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPS 61
Query: 94 DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLE 153
DL ++D+ + P GFILDG+PR+ QA+ L EMLE++G +D VL F + + VL
Sbjct: 62 DLTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLL 121
Query: 154 ERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEP 213
ER+ GR R DDT V+ +R++ + +T P
Sbjct: 122 ERLKGRG-------------------------------RADDTDDVILNRMKVYRDETAP 150
Query: 214 VIDYY 218
+++YY
Sbjct: 151 LLEYY 155
>pdb|2CDN|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Adenylate
Kinase Complexed With Two Molecules Of Adp And Mg
Length = 201
Score = 125 bits (313), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 103/185 (55%), Gaps = 31/185 (16%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
R++L+GPPG+GKGTQ+ + ++ + ++TG++ R + T LG++AK +D G+LV
Sbjct: 22 RVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPS 81
Query: 94 DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLE 153
DL ++D+ + P GFILDG+PR+ QA+ L EMLE++G +D VL F + + VL
Sbjct: 82 DLTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLL 141
Query: 154 ERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEP 213
ER+ GR R DDT V+ +R++ + +T P
Sbjct: 142 ERLKGRG-------------------------------RADDTDDVILNRMKVYRDETAP 170
Query: 214 VIDYY 218
+++YY
Sbjct: 171 LLEYY 175
>pdb|3L0P|A Chain A, Crystal Structures Of Iron Containing Adenylate Kinase
From Desulfovibrio Gigas
pdb|3L0S|A Chain A, Crystal Structures Of Zinc, Cobalt And Iron Containing
Adenylate Kinase From Gram-Negative Bacteria
Desulfovibrio Gigas
pdb|3L0S|C Chain C, Crystal Structures Of Zinc, Cobalt And Iron Containing
Adenylate Kinase From Gram-Negative Bacteria
Desulfovibrio Gigas
Length = 223
Score = 114 bits (286), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 106/193 (54%), Gaps = 6/193 (3%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
+++ GP GSGKGTQ ++KD+Y L H+ +G + R + T LG KAKE +D+G+LV D
Sbjct: 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPD 61
Query: 94 DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLE 153
D+ + ++ E ++ + G++LDGFPR VQAQKL E L+++G K++ V+ + V +
Sbjct: 62 DITIPMVLETLESKG-KDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAK 120
Query: 154 ERITGRWIHPSSGRTYHTKFAPPKVPGVD--DVTGEPLIQRKDDT-AAVLKSRLEAFHKQ 210
RI GR I ++ + F P D V G L R DD + R + ++
Sbjct: 121 NRIMGRRICKNNPNHPNNIFIEAIKPNGDVCRVCGGALSARADDQDEGAINKRHDIYYNT 180
Query: 211 TEPVI--DYYSKK 221
+ + YY K
Sbjct: 181 VDGTLAAAYYYKN 193
>pdb|2XB4|A Chain A, Crystal Structures Of Zinc Containing Adenylate Kinase
From Desulfovibrio Gigas
Length = 223
Score = 114 bits (286), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 106/193 (54%), Gaps = 6/193 (3%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
+++ GP GSGKGTQ ++KD+Y L H+ +G + R + T LG KAKE +D+G+LV D
Sbjct: 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPD 61
Query: 94 DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLE 153
D+ + ++ E ++ + G++LDGFPR VQAQKL E L+++G K++ V+ + V +
Sbjct: 62 DITIPMVLETLESKG-KDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAK 120
Query: 154 ERITGRWIHPSSGRTYHTKFAPPKVPGVD--DVTGEPLIQRKDDT-AAVLKSRLEAFHKQ 210
RI GR I ++ + F P D V G L R DD + R + ++
Sbjct: 121 NRIMGRRICKNNPNHPNNIFIDAIKPNGDVCRVCGGALSARADDQDEGAINKRHDIYYNT 180
Query: 211 TEPVI--DYYSKK 221
+ + YY K
Sbjct: 181 VDGTLAAAYYYKN 193
>pdb|3CM0|A Chain A, Crystal Structure Of Adenylate Kinase From Thermus
Thermophilus Hb8
Length = 186
Score = 110 bits (276), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 108/211 (51%), Gaps = 32/211 (15%)
Query: 35 LILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD 94
+I +GPPG+GKGTQ+ + E L+TGD+LR VA TPLG + + M++G+LV DD
Sbjct: 7 VIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDD 66
Query: 95 LVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEE 154
L++ +I E + + I DGFPRT QA+ LD +L + G ++ V+ + + L
Sbjct: 67 LILELIREELAER-----VIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVR 121
Query: 155 RITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPV 214
RI R L R DD ++ RLE + ++TEP+
Sbjct: 122 RILRRA---------------------------ELEGRSDDNEETVRRRLEVYREKTEPL 154
Query: 215 IDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 245
+ YY +G++ ++ P EV + ++ AL
Sbjct: 155 VGYYEARGVLKRVDGLGTPDEVYARIRAALG 185
>pdb|1Z83|A Chain A, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|1Z83|B Chain B, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|1Z83|C Chain C, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|2C95|A Chain A, Structure Of Adenylate Kinase 1 In Complex With P1,P4-Di
(Adenosine)tetraphosphate
pdb|2C95|B Chain B, Structure Of Adenylate Kinase 1 In Complex With P1,P4-Di
(Adenosine)tetraphosphate
Length = 196
Score = 107 bits (268), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 74/213 (34%), Positives = 111/213 (52%), Gaps = 32/213 (15%)
Query: 35 LILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD 94
+ +VG PGSGKGTQ I +Y HL+TGD+LR+ V++ + G K E M+KG+LV +
Sbjct: 12 IFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLE 71
Query: 95 LVVGIIDEAM-KKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLE 153
V+ ++ +AM K + KGF++DG+PR EVQ E E++ + +L +
Sbjct: 72 TVLDMLRDAMVAKVNTSKGFLIDGYPR-EVQQ---GEEFERRIGQPTLLLYVDAGPETMT 127
Query: 154 ERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEP 213
+R+ R +SGR DD +K RLE ++K TEP
Sbjct: 128 QRLLKRG--ETSGRV-------------------------DDNEETIKKRLETYYKATEP 160
Query: 214 VIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA 246
VI +Y K+GIV +++AE V S+V L A
Sbjct: 161 VIAFYEKRGIVRKVNAEGSVDSVFSQVCTHLDA 193
>pdb|3ADK|A Chain A, Refined Structure Of Porcine Cytosolic Adenylate Kinase At
2.1 Angstroms Resolution
Length = 195
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/215 (33%), Positives = 111/215 (51%), Gaps = 38/215 (17%)
Query: 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGE 89
K K + +VG PGSGKGTQ I +Y HL+TGD+LRA V++ + G E M+KG+
Sbjct: 7 KKSKIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQ 66
Query: 90 LVSDDLVVGIIDEAM-KKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDK-VLNFAI 147
LV + V+ ++ +AM K KGF++DG+PR Q ++ + +K+ + L +
Sbjct: 67 LVPLETVLDMLRDAMVAKVDTSKGFLIDGYPREVKQGEEFE-------RKIGQPTLLLYV 119
Query: 148 DDAVLEERITGRWIH--PSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLE 205
D E +T R + +SGR DD +K RLE
Sbjct: 120 DAG--PETMTKRLLKRGETSGRV-------------------------DDNEETIKKRLE 152
Query: 206 AFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEV 240
++K TEPVI +Y K+GIV +++AE +V S+V
Sbjct: 153 TYYKATEPVIAFYEKRGIVRKVNAEGSVDDVFSQV 187
>pdb|3UMF|A Chain A, Schistosoma Mansoni Adenylate Kinase
Length = 217
Score = 87.4 bits (215), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 104/215 (48%), Gaps = 36/215 (16%)
Query: 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVS 92
K + ++G PGSGKGTQ + ++ HL++GD+LRA V + +P G + K M++GELV
Sbjct: 30 KVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVP 89
Query: 93 DDLVVGIIDEAMKK---PSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDD 149
++V+ ++ EAM K +C F++DG+PR Q K EK+ V+NF + +
Sbjct: 90 LEVVLALLKEAMIKLVDKNCH--FLIDGYPRELDQGIK----FEKEVCPCLCVINFDVSE 143
Query: 150 AVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHK 209
V+ +R+ R +S R DD + R F++
Sbjct: 144 EVMRKRLLKRA--ETSNRV-------------------------DDNEETIVKRFRTFNE 176
Query: 210 QTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKAL 244
T+PVI++Y ++ V + A + +V L
Sbjct: 177 LTKPVIEHYKQQNKVITIDASGTVDAIFDKVNHEL 211
>pdb|2BWJ|A Chain A, Structure Of Adenylate Kinase 5
pdb|2BWJ|B Chain B, Structure Of Adenylate Kinase 5
pdb|2BWJ|C Chain C, Structure Of Adenylate Kinase 5
pdb|2BWJ|D Chain D, Structure Of Adenylate Kinase 5
pdb|2BWJ|E Chain E, Structure Of Adenylate Kinase 5
pdb|2BWJ|F Chain F, Structure Of Adenylate Kinase 5
Length = 199
Score = 87.0 bits (214), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 111/216 (51%), Gaps = 34/216 (15%)
Query: 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVS 92
K + ++G PGSGKGTQ + ++Y HL+TG++LR +A+++ ++ M++G+LV
Sbjct: 13 KIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVP 72
Query: 93 DDLVVGIIDEAM-KKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKV-DKVLNFAIDDA 150
+V+ ++ EAM +GF++DG+PR Q ++ G+++ D L +D +
Sbjct: 73 SGIVLELLKEAMVASLGDTRGFLIDGYPREVKQGEEF-------GRRIGDPQLVICMDCS 125
Query: 151 VLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQ 210
+ +T R + S +P DDT + RLEA+++
Sbjct: 126 A--DTMTNRLLQMSR----------SSLP-------------VDDTTKTIAKRLEAYYRA 160
Query: 211 TEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA 246
+ PVI YY K + +++AE P++V ++ A+ +
Sbjct: 161 SIPVIAYYETKTQLHKINAEGTPEDVFLQLCTAIDS 196
>pdb|1UKY|A Chain A, Substrate Specificity And Assembly Of Catalytic Center
Derived From Two Structures Of Ligated Uridylate Kinase
pdb|1UKZ|A Chain A, Substrate Specificity And Assembly Of Catalytic Center
Derived From Two Structures Of Ligated Uridylate Kinase
Length = 203
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 102/215 (47%), Gaps = 38/215 (17%)
Query: 35 LILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVA-AKTPLGIKAKEAMDKGELVSD 93
+ ++G PG+GKGTQ + +Y HL+ GD+LRA A + G K + +G++V
Sbjct: 18 IFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQ 77
Query: 94 DLVVGIIDEAMKKP--SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDK--VLNFAIDD 149
++ + ++ A+ + + F++DGFPR K+D+ + + V+ +L F +
Sbjct: 78 EITLALLRNAISDNVKANKHKFLIDGFPR------KMDQAISFERDIVESKFILFFDCPE 131
Query: 150 AVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHK 209
++ ER+ R +SGR+ DD +K R F +
Sbjct: 132 DIMLERLLERG--KTSGRS-------------------------DDNIESIKKRFNTFKE 164
Query: 210 QTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKAL 244
+ PVI+Y+ K V ++ ++ ++V +VQ A+
Sbjct: 165 TSMPVIEYFETKSKVVRVRCDRSVEDVYKDVQDAI 199
>pdb|1TEV|A Chain A, Crystal Structure Of The Human UmpCMP KINASE IN OPEN
Conformation
Length = 196
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 102/213 (47%), Gaps = 37/213 (17%)
Query: 35 LILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTP---LGIKAKEAMDKGELV 91
+ ++G PG+GKGTQ I ++Y HL+ G++LR K P G ++ + +G++V
Sbjct: 6 VFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDE--RKNPDSQYGELIEKYIKEGKIV 63
Query: 92 SDDLVVGII----DEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAI 147
++ + ++ D+ M + + F++DGFPR + Q ++ ++ + V VL F
Sbjct: 64 PVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKAD-VSFVLFFDC 122
Query: 148 DDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAF 207
++ + ER R SSGR+ DD L+ R++ +
Sbjct: 123 NNEICIERCLER--GKSSGRS-------------------------DDNRESLEKRIQTY 155
Query: 208 HKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEV 240
+ T+P+ID Y + G V ++ A K EV EV
Sbjct: 156 LQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEV 188
>pdb|1QF9|A Chain A, Ph Influences Fluoride Coordination Number Of The Alfx
Phosphoryl Transfer Transition State Analog In UmpCMP
Kinase
pdb|5UKD|A Chain A, Ph Influences Fluoride Coordination Number Of The Alfx
Phosphoryl Transfer Transition State Analog
pdb|1UKE|A Chain A, UmpCMP KINASE FROM SLIME MOLD
pdb|2UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, CMP
pdb|3UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, CMP, AND
Alf3
pdb|4UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, UDP,
Beryllium Fluoride
Length = 194
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 98/218 (44%), Gaps = 30/218 (13%)
Query: 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG 88
SKP+ +L G PGSGKGTQ I ++ HL+ GD+LR + + G + G
Sbjct: 4 SKPNVVFVL-GGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNG 62
Query: 89 ELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAID 148
E+V + V ++ A+ + K F++DGFPR E +E + K VL F
Sbjct: 63 EIVPSIVTVKLLKNAI-DANQGKNFLVDGFPRNEENNNSWEENM-KDFVDTKFVLFFDCP 120
Query: 149 DAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFH 208
+ V+ +R+ R SSGR+ DD +K R F+
Sbjct: 121 EEVMTQRLLKR--GESSGRS-------------------------DDNIESIKKRFNTFN 153
Query: 209 KQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA 246
QT+ VID+Y+K V + A + EV ++V+ +
Sbjct: 154 VQTKLVIDHYNKFDKVKIIPANRDVNEVYNDVENLFKS 191
>pdb|1Q3T|A Chain A, Solution Structure And Function Of An Essential Cmp
Kinase Of Streptococcus Pneumoniae
Length = 236
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 39 GPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA--VAAKTPLGIKAKEAM 85
GP SGK T + II ++ +L TG M RAA +A K LG++ EA+
Sbjct: 23 GPASSGKSTVAKIIAKDFGFTYLDTGAMYRAATYMALKNQLGVEEVEAL 71
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%)
Query: 1 MASSSAANLEDVPSVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCH 60
MA + A E V VD + R +K K ++LVGPPG+GK + + E +
Sbjct: 13 MAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPF 72
Query: 61 LATG 64
+ G
Sbjct: 73 FSMG 76
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 26 KCASKPDKRLILVGPPGSGKGTQSPIIKDE 55
K +P + L+L GPPG GK T + +I E
Sbjct: 32 KARKEPLEHLLLFGPPGLGKTTLAHVIAHE 61
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 20 ELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56
++L+ + P K LVGP GSGK T + ++++ Y
Sbjct: 33 QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLY 69
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 26 KCASKPDKRLILVGPPGSGKGTQSPIIKDE 55
K +P + L+L GPPG GK T + +I E
Sbjct: 32 KARKEPLEHLLLFGPPGLGKTTLAHVIAHE 61
>pdb|2XTP|A Chain A, Crystal Structure Of Nucleotide-Free Human Gimap2, Amino
Acid Residues 1-260
Length = 260
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 26 KCASKPDKRLILVGPPGSGK 45
+CAS+ + R+ILVG G+GK
Sbjct: 16 QCASRSELRIILVGKTGTGK 35
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 20 ELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56
++L+ + P K LVGP GSGK T + ++++ Y
Sbjct: 33 QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLY 69
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 28.9 bits (63), Expect = 2.6, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 20 ELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56
E+L+ + + +P + L LVGP G GK T +++ Y
Sbjct: 1093 EILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFY 1129
>pdb|2XTM|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 1-234
pdb|2XTM|B Chain B, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 1-234
pdb|2XTN|A Chain A, Crystal Structure Of Gtp-Bound Human Gimap2, Amino Acid
Residues 1-234
Length = 234
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 26 KCASKPDKRLILVGPPGSGK 45
+CAS+ + R+ILVG G+GK
Sbjct: 16 QCASRSELRIILVGKTGTGK 35
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 20 ELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56
++L+ + P K LVGP GSGK T + ++++ Y
Sbjct: 33 QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLY 69
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 26 KCASKPDKRLILVGPPGSGKGTQSPIIKDE 55
K +P + L+L GPPG GK T + +I E
Sbjct: 32 KARKEPLEHLLLFGPPGLGKTTLAHVIAHE 61
>pdb|1OSB|A Chain A, Conjugative Relaxase Trwc In Complex With Orit Dna. Metal-
Free Structure.
pdb|1OSB|C Chain C, Conjugative Relaxase Trwc In Complex With Orit Dna. Metal-
Free Structure
Length = 293
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 9/29 (31%), Positives = 20/29 (68%)
Query: 195 DTAAVLKSRLEAFHKQTEPVIDYYSKKGI 223
D A + + ++E F K+TE + ++Y+ +G+
Sbjct: 220 DLAHIDRQQIEGFSKRTEQIAEWYAARGL 248
>pdb|2CDM|A Chain A, The Structure Of Trwc Complexed With A 27-Mer Dna
Comprising The Recognition Hairpin And The Cleavage Site
pdb|2CDM|C Chain C, The Structure Of Trwc Complexed With A 27-Mer Dna
Comprising The Recognition Hairpin And The Cleavage Site
Length = 293
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 9/29 (31%), Positives = 20/29 (68%)
Query: 195 DTAAVLKSRLEAFHKQTEPVIDYYSKKGI 223
D A + + ++E F K+TE + ++Y+ +G+
Sbjct: 220 DLAHIDRQQIEGFSKRTEQIAEWYAARGL 248
>pdb|1OMH|A Chain A, Conjugative Relaxase Trwc In Complex With Orit Dna. Metal-
Free Structure.
pdb|1QX0|A Chain A, Conjugative Relaxase Trwc In Complex With Orit Dna. Metal-
Bound Structure
pdb|1S6M|A Chain A, Conjugative Relaxase Trwc In Complex With Orit Dna. Metal-
Bound Structure
pdb|1ZM5|A Chain A, Conjugative Relaxase Trwc In Complex With Orit Dna,
Cooper- Bound Structure
Length = 293
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 9/29 (31%), Positives = 20/29 (68%)
Query: 195 DTAAVLKSRLEAFHKQTEPVIDYYSKKGI 223
D A + + ++E F K+TE + ++Y+ +G+
Sbjct: 220 DLAHIDRQQIEGFSKRTEQIAEWYAARGL 248
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56
+L+ + KP +++ LVGP GSGK T ++ Y
Sbjct: 370 VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFY 405
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 27.3 bits (59), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 15 VDLMTELLRRMKCASKPDKRLILVGPPGSGK 45
V+ + E R K K K +++VGPPG+GK
Sbjct: 28 VEYLREPSRFQKLGGKIPKGVLMVGPPGTGK 58
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,449,488
Number of Sequences: 62578
Number of extensions: 313581
Number of successful extensions: 787
Number of sequences better than 100.0: 62
Number of HSP's better than 100.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 686
Number of HSP's gapped (non-prelim): 62
length of query: 246
length of database: 14,973,337
effective HSP length: 96
effective length of query: 150
effective length of database: 8,965,849
effective search space: 1344877350
effective search space used: 1344877350
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.9 bits)